Query 011492
Match_columns 484
No_of_seqs 547 out of 3907
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 01:58:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1160 Predicted GTPases [Gen 100.0 1.3E-46 2.9E-51 368.4 24.9 280 164-481 4-284 (444)
2 PRK03003 GTP-binding protein D 100.0 5.9E-36 1.3E-40 310.4 30.4 279 163-481 38-317 (472)
3 TIGR03594 GTPase_EngA ribosome 100.0 8.1E-36 1.8E-40 307.9 28.5 277 165-481 1-278 (429)
4 PRK00093 GTP-binding protein D 100.0 1.5E-35 3.2E-40 306.3 29.2 277 164-481 2-279 (435)
5 PRK09518 bifunctional cytidyla 100.0 7.8E-34 1.7E-38 307.7 30.4 282 162-481 274-556 (712)
6 cd01858 NGP_1 NGP-1. Autoanti 99.9 6.7E-23 1.5E-27 181.8 14.7 153 266-430 2-157 (157)
7 COG1159 Era GTPase [General fu 99.9 9E-22 2E-26 183.9 15.7 165 163-359 6-175 (298)
8 PF02421 FeoB_N: Ferrous iron 99.9 7.9E-22 1.7E-26 171.6 12.0 151 164-351 1-156 (156)
9 COG0486 ThdF Predicted GTPase 99.9 3.1E-21 6.8E-26 190.6 15.4 163 162-358 216-378 (454)
10 KOG1191 Mitochondrial GTPase [ 99.9 1.8E-22 3.8E-27 198.4 6.2 288 164-482 76-373 (531)
11 PRK12289 GTPase RsgA; Reviewed 99.9 2.7E-21 5.8E-26 191.1 13.4 170 268-460 85-267 (352)
12 TIGR03596 GTPase_YlqF ribosome 99.9 8.6E-21 1.9E-25 183.5 16.2 163 264-434 13-177 (276)
13 cd01849 YlqF_related_GTPase Yl 99.9 5.9E-21 1.3E-25 168.9 13.1 151 274-430 1-155 (155)
14 PRK09563 rbgA GTPase YlqF; Rev 99.8 1.2E-20 2.6E-25 183.5 15.2 163 264-434 16-180 (287)
15 cd01857 HSR1_MMR1 HSR1/MMR1. 99.8 1.9E-20 4.1E-25 162.9 14.6 136 264-432 3-140 (141)
16 TIGR00157 ribosome small subun 99.8 5.7E-21 1.2E-25 181.0 11.9 146 268-437 32-188 (245)
17 COG1160 Predicted GTPases [Gen 99.8 2.5E-20 5.5E-25 183.7 16.0 184 162-395 177-369 (444)
18 TIGR03156 GTP_HflX GTP-binding 99.8 5.5E-20 1.2E-24 182.9 16.8 161 161-354 187-350 (351)
19 cd01856 YlqF YlqF. Proteins o 99.8 7E-20 1.5E-24 164.7 15.1 160 263-431 10-171 (171)
20 cd01859 MJ1464 MJ1464. This f 99.8 8.5E-20 1.8E-24 161.8 15.2 151 264-430 4-156 (156)
21 PRK12288 GTPase RsgA; Reviewed 99.8 2.4E-20 5.2E-25 184.4 12.7 167 270-460 118-299 (347)
22 TIGR00436 era GTP-binding prot 99.8 1.4E-19 3E-24 174.9 16.7 161 165-358 2-166 (270)
23 cd01855 YqeH YqeH. YqeH is an 99.8 5.8E-20 1.3E-24 168.3 12.9 147 263-430 25-190 (190)
24 KOG1144 Translation initiation 99.8 2.4E-20 5.2E-25 189.5 10.7 210 159-430 471-740 (1064)
25 COG2262 HflX GTPases [General 99.8 1.2E-19 2.6E-24 176.2 14.8 198 127-357 156-357 (411)
26 PRK15494 era GTPase Era; Provi 99.8 2.6E-19 5.6E-24 177.9 16.7 166 161-358 50-218 (339)
27 cd04178 Nucleostemin_like Nucl 99.8 3E-19 6.6E-24 159.7 12.9 145 274-430 1-172 (172)
28 cd01894 EngA1 EngA1 subfamily. 99.8 1.2E-18 2.5E-23 154.0 15.8 155 167-354 1-156 (157)
29 KOG1424 Predicted GTP-binding 99.8 4.3E-19 9.3E-24 175.3 13.3 171 262-436 164-375 (562)
30 PRK11058 GTPase HflX; Provisio 99.8 1.2E-18 2.7E-23 177.1 16.1 163 162-356 196-362 (426)
31 cd01897 NOG NOG1 is a nucleola 99.8 2.9E-18 6.2E-23 153.6 15.3 161 164-355 1-167 (168)
32 cd01878 HflX HflX subfamily. 99.8 3E-18 6.4E-23 158.9 15.7 163 160-354 38-203 (204)
33 COG0218 Predicted GTPase [Gene 99.8 8.2E-18 1.8E-22 149.3 16.9 173 154-356 15-197 (200)
34 PRK12299 obgE GTPase CgtA; Rev 99.8 5.7E-18 1.2E-22 167.1 16.7 164 162-357 157-329 (335)
35 PRK00098 GTPase RsgA; Reviewed 99.8 9.7E-19 2.1E-23 170.8 11.1 144 269-436 77-232 (298)
36 COG1159 Era GTPase [General fu 99.8 1E-18 2.3E-23 163.4 10.4 105 371-482 6-110 (298)
37 cd01854 YjeQ_engC YjeQ/EngC. 99.8 1.2E-18 2.5E-23 169.3 10.6 143 269-435 75-228 (287)
38 COG1162 Predicted GTPases [Gen 99.8 2.1E-18 4.5E-23 163.1 12.0 145 270-436 77-232 (301)
39 cd04164 trmE TrmE (MnmE, ThdF, 99.8 7.5E-18 1.6E-22 148.7 14.7 155 164-355 2-156 (157)
40 PRK00089 era GTPase Era; Revie 99.8 7.9E-18 1.7E-22 164.8 16.3 164 163-358 5-173 (292)
41 PRK03003 GTP-binding protein D 99.8 3.9E-17 8.4E-22 169.9 22.3 184 162-396 210-401 (472)
42 PRK05291 trmE tRNA modificatio 99.8 3.5E-18 7.6E-23 175.8 14.3 156 163-356 215-370 (449)
43 COG1161 Predicted GTPases [Gen 99.8 4.7E-18 1E-22 167.1 13.9 166 262-435 24-192 (322)
44 cd01898 Obg Obg subfamily. Th 99.8 7.1E-18 1.5E-22 151.3 13.8 158 165-354 2-169 (170)
45 PRK12296 obgE GTPase CgtA; Rev 99.8 1.2E-17 2.7E-22 170.6 15.6 166 162-359 158-343 (500)
46 cd01895 EngA2 EngA2 subfamily. 99.8 2.9E-17 6.3E-22 147.3 16.4 162 163-353 2-172 (174)
47 PRK12297 obgE GTPase CgtA; Rev 99.8 2.4E-17 5.2E-22 166.6 17.4 164 162-358 157-329 (424)
48 cd04171 SelB SelB subfamily. 99.8 2.2E-17 4.7E-22 147.0 15.0 150 165-353 2-163 (164)
49 COG0486 ThdF Predicted GTPase 99.8 4.9E-18 1.1E-22 168.0 11.7 109 365-480 211-319 (454)
50 TIGR03594 GTPase_EngA ribosome 99.7 2.6E-17 5.5E-22 170.1 17.5 167 162-357 171-345 (429)
51 PRK00093 GTP-binding protein D 99.7 3.9E-17 8.5E-22 169.0 18.2 167 162-357 172-345 (435)
52 TIGR03597 GTPase_YqeH ribosome 99.7 1.3E-17 2.8E-22 166.9 13.3 184 264-473 55-253 (360)
53 cd04163 Era Era subfamily. Er 99.7 6.2E-17 1.4E-21 143.9 16.3 160 163-354 3-167 (168)
54 TIGR02729 Obg_CgtA Obg family 99.7 4.4E-17 9.5E-22 160.7 16.5 162 162-355 156-328 (329)
55 PF00009 GTP_EFTU: Elongation 99.7 1.2E-17 2.5E-22 152.8 11.4 154 163-356 3-187 (188)
56 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.9E-17 8.5E-22 167.1 15.9 160 162-357 202-361 (442)
57 KOG2423 Nucleolar GTPase [Gene 99.7 2.7E-17 5.8E-22 157.1 13.4 178 245-434 185-366 (572)
58 PRK12298 obgE GTPase CgtA; Rev 99.7 4.1E-17 8.8E-22 164.2 14.6 165 162-358 158-335 (390)
59 TIGR03598 GTPase_YsxC ribosome 99.7 1.4E-16 3.1E-21 144.4 16.4 160 156-345 11-179 (179)
60 PRK13796 GTPase YqeH; Provisio 99.7 3.5E-17 7.7E-22 164.0 13.4 146 266-433 62-223 (365)
61 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 4.9E-17 1.1E-21 145.5 12.4 151 164-355 1-165 (168)
62 cd01889 SelB_euk SelB subfamil 99.7 8.9E-17 1.9E-21 147.5 14.3 153 164-356 1-186 (192)
63 COG1163 DRG Predicted GTPase [ 99.7 7.3E-17 1.6E-21 151.5 13.6 202 118-358 21-291 (365)
64 cd04124 RabL2 RabL2 subfamily. 99.7 1.1E-16 2.3E-21 142.6 13.9 154 164-356 1-158 (161)
65 cd01881 Obg_like The Obg-like 99.7 3.8E-17 8.3E-22 147.3 11.0 154 168-353 1-174 (176)
66 KOG1423 Ras-like GTPase ERA [C 99.7 1E-16 2.2E-21 148.9 13.5 171 159-356 68-271 (379)
67 cd01879 FeoB Ferrous iron tran 99.7 1.4E-16 3.1E-21 140.8 13.7 151 168-355 1-156 (158)
68 PRK04213 GTP-binding protein; 99.7 4.1E-16 8.9E-21 144.1 16.9 165 162-357 8-193 (201)
69 KOG1191 Mitochondrial GTPase [ 99.7 1.2E-16 2.6E-21 157.6 13.4 166 162-356 267-450 (531)
70 KOG2484 GTPase [General functi 99.7 1.1E-16 2.4E-21 154.0 12.7 160 263-434 137-311 (435)
71 cd04154 Arl2 Arl2 subfamily. 99.7 1.4E-16 3.1E-21 143.5 12.7 149 162-352 13-171 (173)
72 COG1084 Predicted GTPase [Gene 99.7 2.8E-16 6E-21 148.4 14.8 163 160-354 165-334 (346)
73 KOG1489 Predicted GTP-binding 99.7 1.6E-16 3.4E-21 148.7 12.8 161 161-353 194-364 (366)
74 PRK09518 bifunctional cytidyla 99.7 2.9E-16 6.3E-21 170.9 16.9 166 162-357 449-622 (712)
75 cd04142 RRP22 RRP22 subfamily. 99.7 3.6E-16 7.8E-21 143.9 14.9 162 164-356 1-174 (198)
76 PRK00454 engB GTP-binding prot 99.7 7E-16 1.5E-20 141.9 16.8 168 159-356 20-194 (196)
77 cd00881 GTP_translation_factor 99.7 3.5E-16 7.6E-21 142.6 14.4 152 165-356 1-187 (189)
78 cd01890 LepA LepA subfamily. 99.7 3.2E-16 6.9E-21 141.9 13.9 152 164-355 1-176 (179)
79 cd04149 Arf6 Arf6 subfamily. 99.7 8.9E-17 1.9E-21 144.2 10.0 149 163-353 9-167 (168)
80 cd04106 Rab23_lke Rab23-like s 99.7 2E-16 4.4E-21 140.7 12.0 151 164-353 1-160 (162)
81 COG0370 FeoB Fe2+ transport sy 99.7 3.3E-16 7.1E-21 161.5 15.1 157 163-356 3-164 (653)
82 cd01861 Rab6 Rab6 subfamily. 99.7 2.3E-16 4.9E-21 140.2 12.2 152 164-354 1-160 (161)
83 cd04145 M_R_Ras_like M-Ras/R-R 99.7 3.5E-16 7.6E-21 139.3 13.3 153 163-355 2-163 (164)
84 cd00877 Ran Ran (Ras-related n 99.7 3.1E-16 6.8E-21 140.4 13.0 154 164-357 1-160 (166)
85 cd04120 Rab12 Rab12 subfamily. 99.7 2.8E-16 6.1E-21 144.7 12.8 154 164-356 1-163 (202)
86 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.6E-16 5.7E-21 140.7 11.9 151 165-353 1-166 (167)
87 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.6E-16 7.7E-21 138.8 12.5 151 164-354 2-160 (162)
88 cd04175 Rap1 Rap1 subgroup. T 99.7 4.3E-16 9.4E-21 139.0 12.6 152 164-355 2-162 (164)
89 cd01865 Rab3 Rab3 subfamily. 99.7 5.1E-16 1.1E-20 138.7 13.0 153 164-355 2-162 (165)
90 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 4.2E-16 9.1E-21 139.3 12.3 154 163-355 2-163 (166)
91 cd01891 TypA_BipA TypA (tyrosi 99.7 6.9E-16 1.5E-20 141.8 14.1 147 163-349 2-175 (194)
92 cd04121 Rab40 Rab40 subfamily. 99.7 5.3E-16 1.2E-20 141.5 13.0 156 162-356 5-167 (189)
93 cd04158 ARD1 ARD1 subfamily. 99.7 3.4E-16 7.4E-21 140.5 11.3 151 165-357 1-162 (169)
94 cd01896 DRG The developmentall 99.7 8.4E-16 1.8E-20 144.9 14.3 157 165-356 2-226 (233)
95 PRK15467 ethanolamine utilizat 99.7 6.2E-16 1.3E-20 137.1 12.6 142 165-356 3-147 (158)
96 cd04136 Rap_like Rap-like subf 99.7 6.1E-16 1.3E-20 137.6 12.6 151 164-354 2-161 (163)
97 cd04132 Rho4_like Rho4-like su 99.7 4.8E-16 1E-20 141.9 12.2 154 164-357 1-168 (187)
98 cd04112 Rab26 Rab26 subfamily. 99.7 5.9E-16 1.3E-20 141.9 12.8 157 164-358 1-165 (191)
99 smart00175 RAB Rab subfamily o 99.7 1.5E-15 3.2E-20 135.3 15.0 154 164-356 1-162 (164)
100 cd01874 Cdc42 Cdc42 subfamily. 99.7 7E-16 1.5E-20 139.3 12.7 150 164-353 2-172 (175)
101 PTZ00369 Ras-like protein; Pro 99.7 1.2E-15 2.6E-20 139.6 13.8 157 162-358 4-169 (189)
102 cd04140 ARHI_like ARHI subfami 99.7 5.8E-16 1.3E-20 138.4 11.5 151 164-354 2-163 (165)
103 cd04119 RJL RJL (RabJ-Like) su 99.7 9.4E-16 2E-20 136.9 12.8 153 164-355 1-166 (168)
104 cd01868 Rab11_like Rab11-like. 99.7 8.7E-16 1.9E-20 137.1 12.6 154 163-355 3-164 (165)
105 cd01864 Rab19 Rab19 subfamily. 99.7 8.3E-16 1.8E-20 137.3 12.4 153 163-354 3-164 (165)
106 cd04109 Rab28 Rab28 subfamily. 99.7 9.5E-16 2.1E-20 143.2 13.2 155 164-357 1-167 (215)
107 PRK05306 infB translation init 99.7 8.3E-16 1.8E-20 165.7 14.5 153 160-353 287-449 (787)
108 smart00173 RAS Ras subfamily o 99.7 1.1E-15 2.3E-20 136.3 12.9 153 164-356 1-162 (164)
109 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.2E-15 2.7E-20 141.0 13.7 156 164-358 1-170 (201)
110 cd04176 Rap2 Rap2 subgroup. T 99.7 1.1E-15 2.4E-20 136.2 12.9 152 164-355 2-162 (163)
111 cd01860 Rab5_related Rab5-rela 99.7 7.1E-16 1.5E-20 137.3 11.5 152 164-355 2-162 (163)
112 cd04157 Arl6 Arl6 subfamily. 99.7 4.1E-16 8.9E-21 138.6 9.9 147 165-353 1-161 (162)
113 PF01926 MMR_HSR1: 50S ribosom 99.7 6.9E-16 1.5E-20 129.5 10.7 116 165-312 1-116 (116)
114 cd04144 Ras2 Ras2 subfamily. 99.7 7.8E-16 1.7E-20 141.0 12.0 153 165-357 1-164 (190)
115 TIGR00487 IF-2 translation ini 99.7 9.5E-16 2.1E-20 161.6 14.2 152 161-353 85-247 (587)
116 cd04118 Rab24 Rab24 subfamily. 99.7 1.6E-15 3.4E-20 139.3 13.9 154 164-356 1-166 (193)
117 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-15 2.4E-20 140.6 12.9 167 164-358 1-186 (196)
118 cd01867 Rab8_Rab10_Rab13_like 99.7 1E-15 2.2E-20 137.1 12.3 154 163-355 3-164 (167)
119 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.2E-15 2.7E-20 137.3 12.8 154 163-356 2-164 (172)
120 cd04134 Rho3 Rho3 subfamily. 99.7 1.1E-15 2.4E-20 139.8 12.6 153 164-356 1-174 (189)
121 cd04110 Rab35 Rab35 subfamily. 99.7 1.4E-15 2.9E-20 140.4 13.2 157 162-357 5-168 (199)
122 cd04127 Rab27A Rab27a subfamil 99.6 9.5E-16 2.1E-20 138.9 11.9 154 163-355 4-176 (180)
123 smart00178 SAR Sar1p-like memb 99.6 6E-16 1.3E-20 141.0 10.5 150 163-354 17-183 (184)
124 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 6.7E-16 1.5E-20 139.3 10.7 149 163-353 15-173 (174)
125 cd00880 Era_like Era (E. coli 99.6 2.8E-15 6.1E-20 131.8 14.5 154 168-354 1-162 (163)
126 cd01888 eIF2_gamma eIF2-gamma 99.6 2.4E-15 5.3E-20 139.1 14.6 154 164-356 1-199 (203)
127 cd01862 Rab7 Rab7 subfamily. 99.6 1.9E-15 4.2E-20 135.6 13.5 154 164-356 1-167 (172)
128 KOG0092 GTPase Rab5/YPT51 and 99.6 1E-15 2.2E-20 133.4 11.1 158 163-359 5-170 (200)
129 cd04151 Arl1 Arl1 subfamily. 99.6 1.7E-15 3.7E-20 134.3 12.8 147 165-353 1-157 (158)
130 cd04166 CysN_ATPS CysN_ATPS su 99.6 1.5E-15 3.2E-20 141.1 12.9 144 165-348 1-186 (208)
131 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.2E-15 2.6E-20 135.4 11.9 147 165-353 1-159 (160)
132 cd04150 Arf1_5_like Arf1-Arf5- 99.6 7.5E-16 1.6E-20 136.8 10.5 148 164-353 1-158 (159)
133 cd04101 RabL4 RabL4 (Rab-like4 99.6 1.6E-15 3.5E-20 135.2 12.6 153 164-354 1-162 (164)
134 cd01871 Rac1_like Rac1-like su 99.6 1.6E-15 3.4E-20 136.9 12.6 150 164-353 2-172 (174)
135 cd04133 Rop_like Rop subfamily 99.6 2.2E-15 4.8E-20 135.9 13.5 152 164-355 2-172 (176)
136 PLN03071 GTP-binding nuclear p 99.6 1.3E-15 2.8E-20 142.6 12.4 156 161-356 11-172 (219)
137 cd01866 Rab2 Rab2 subfamily. 99.6 1.6E-15 3.6E-20 135.9 12.6 152 163-355 4-165 (168)
138 PRK09554 feoB ferrous iron tra 99.6 2.3E-15 5E-20 163.2 16.0 160 163-355 3-167 (772)
139 cd04122 Rab14 Rab14 subfamily. 99.6 1.9E-15 4.1E-20 135.1 12.4 153 163-355 2-163 (166)
140 smart00177 ARF ARF-like small 99.6 1.5E-15 3.2E-20 137.2 11.7 151 163-355 13-173 (175)
141 cd04139 RalA_RalB RalA/RalB su 99.6 2.1E-15 4.5E-20 134.2 12.5 152 164-355 1-161 (164)
142 COG0532 InfB Translation initi 99.6 4.2E-15 9.2E-20 149.3 15.9 153 162-355 4-169 (509)
143 cd04126 Rab20 Rab20 subfamily. 99.6 1.6E-15 3.4E-20 141.4 12.0 153 164-358 1-192 (220)
144 smart00174 RHO Rho (Ras homolo 99.6 2E-15 4.4E-20 136.0 12.3 150 166-355 1-171 (174)
145 cd04113 Rab4 Rab4 subfamily. 99.6 2.4E-15 5.1E-20 133.7 12.5 152 164-354 1-160 (161)
146 PLN00223 ADP-ribosylation fact 99.6 1.3E-15 2.8E-20 138.3 10.9 152 163-356 17-178 (181)
147 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 9.3E-16 2E-20 139.6 10.0 154 163-356 3-170 (183)
148 PRK01889 GTPase RsgA; Reviewed 99.6 9.1E-16 2E-20 153.2 10.8 145 270-437 110-264 (356)
149 cd04131 Rnd Rnd subfamily. Th 99.6 2.9E-15 6.4E-20 135.5 13.2 150 164-353 2-173 (178)
150 TIGR00491 aIF-2 translation in 99.6 4.7E-15 1E-19 156.1 16.5 154 162-356 3-216 (590)
151 PLN03118 Rab family protein; P 99.6 2E-15 4.3E-20 140.6 12.3 156 162-357 13-178 (211)
152 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 2.5E-15 5.4E-20 135.0 12.5 153 165-357 2-166 (170)
153 cd00879 Sar1 Sar1 subfamily. 99.6 2.9E-15 6.4E-20 137.0 13.2 150 163-354 19-189 (190)
154 cd01893 Miro1 Miro1 subfamily. 99.6 2.8E-15 6E-20 134.2 12.6 151 164-355 1-163 (166)
155 TIGR00475 selB selenocysteine- 99.6 4.8E-15 1.1E-19 157.0 16.4 156 164-359 1-169 (581)
156 cd01863 Rab18 Rab18 subfamily. 99.6 2.9E-15 6.4E-20 133.0 12.6 151 164-354 1-160 (161)
157 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 4.8E-15 1E-19 129.2 13.3 159 163-360 22-189 (221)
158 cd01884 EF_Tu EF-Tu subfamily. 99.6 3.4E-15 7.3E-20 136.7 13.1 143 163-345 2-172 (195)
159 CHL00189 infB translation init 99.6 3.8E-15 8.2E-20 159.2 15.4 154 161-355 242-409 (742)
160 cd04117 Rab15 Rab15 subfamily. 99.6 4.3E-15 9.4E-20 132.2 13.4 152 164-354 1-160 (161)
161 cd01875 RhoG RhoG subfamily. 99.6 3E-15 6.5E-20 137.2 12.5 154 163-356 3-177 (191)
162 cd00157 Rho Rho (Ras homology) 99.6 2.1E-15 4.5E-20 135.3 11.2 150 164-353 1-170 (171)
163 cd01892 Miro2 Miro2 subfamily. 99.6 4.5E-15 9.8E-20 133.2 13.3 153 162-355 3-165 (169)
164 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3.4E-15 7.3E-20 134.6 12.5 149 164-352 1-170 (173)
165 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.1E-15 4.6E-20 133.6 10.8 147 165-353 1-157 (158)
166 PTZ00133 ADP-ribosylation fact 99.6 2.4E-15 5.1E-20 136.7 11.4 152 163-356 17-178 (182)
167 PLN03110 Rab GTPase; Provision 99.6 4.1E-15 8.8E-20 139.0 13.2 157 163-358 12-176 (216)
168 cd04147 Ras_dva Ras-dva subfam 99.6 3E-15 6.4E-20 138.0 12.1 152 165-356 1-163 (198)
169 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 3.5E-15 7.5E-20 135.4 12.2 151 163-353 5-177 (182)
170 PF04548 AIG1: AIG1 family; I 99.6 9.2E-16 2E-20 142.7 8.6 105 373-482 2-107 (212)
171 cd01852 AIG1 AIG1 (avrRpt2-ind 99.6 1.4E-15 3E-20 140.0 9.7 105 373-482 2-107 (196)
172 TIGR02528 EutP ethanolamine ut 99.6 2.9E-15 6.3E-20 130.3 11.1 136 165-352 2-141 (142)
173 cd04146 RERG_RasL11_like RERG/ 99.6 4E-15 8.6E-20 132.9 11.9 152 165-355 1-163 (165)
174 cd04128 Spg1 Spg1p. Spg1p (se 99.6 6.1E-15 1.3E-19 134.0 13.2 155 164-357 1-167 (182)
175 cd00154 Rab Rab family. Rab G 99.6 5.1E-15 1.1E-19 130.4 12.3 150 164-352 1-158 (159)
176 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 6.5E-15 1.4E-19 138.1 13.7 154 163-356 13-188 (232)
177 cd04135 Tc10 TC10 subfamily. 99.6 5.6E-15 1.2E-19 133.1 12.8 151 164-354 1-172 (174)
178 TIGR00231 small_GTP small GTP- 99.6 1.5E-15 3.3E-20 133.4 8.8 150 164-352 2-160 (161)
179 cd04123 Rab21 Rab21 subfamily. 99.6 6.6E-15 1.4E-19 130.5 13.0 153 164-355 1-161 (162)
180 PF01926 MMR_HSR1: 50S ribosom 99.6 2.6E-15 5.7E-20 125.9 9.5 104 373-482 1-104 (116)
181 PF10662 PduV-EutP: Ethanolami 99.6 4.8E-15 1E-19 126.1 11.0 137 164-352 2-142 (143)
182 cd04115 Rab33B_Rab33A Rab33B/R 99.6 1.1E-14 2.3E-19 130.9 13.8 155 163-355 2-168 (170)
183 cd00876 Ras Ras family. The R 99.6 1.1E-14 2.3E-19 128.9 13.6 150 165-354 1-159 (160)
184 cd04143 Rhes_like Rhes_like su 99.6 8.2E-15 1.8E-19 139.3 13.5 152 164-355 1-170 (247)
185 cd04125 RabA_like RabA-like su 99.6 5.1E-15 1.1E-19 135.3 11.7 155 164-357 1-163 (188)
186 cd01870 RhoA_like RhoA-like su 99.6 7.3E-15 1.6E-19 132.4 12.5 151 164-354 2-173 (175)
187 KOG0084 GTPase Rab1/YPT1, smal 99.6 1.3E-14 2.8E-19 127.1 12.5 159 162-359 8-175 (205)
188 cd04114 Rab30 Rab30 subfamily. 99.6 9.7E-15 2.1E-19 130.8 12.0 154 162-354 6-167 (169)
189 cd04155 Arl3 Arl3 subfamily. 99.6 1.7E-14 3.6E-19 129.8 13.4 150 162-353 13-172 (173)
190 cd04177 RSR1 RSR1 subgroup. R 99.6 1.6E-14 3.5E-19 129.4 13.2 152 164-355 2-163 (168)
191 PRK12317 elongation factor 1-a 99.6 1.2E-14 2.6E-19 149.7 13.8 148 161-347 4-196 (425)
192 COG0536 Obg Predicted GTPase [ 99.6 1.3E-14 2.9E-19 137.6 12.8 164 163-358 159-335 (369)
193 PF02421 FeoB_N: Ferrous iron 99.6 6.3E-15 1.4E-19 128.4 9.5 97 373-479 2-98 (156)
194 cd04148 RGK RGK subfamily. Th 99.6 1.4E-14 2.9E-19 135.8 12.5 152 164-356 1-163 (221)
195 cd04116 Rab9 Rab9 subfamily. 99.6 1.7E-14 3.7E-19 129.5 12.6 154 162-354 4-169 (170)
196 cd04111 Rab39 Rab39 subfamily. 99.6 1.4E-14 3.1E-19 134.8 12.1 157 163-358 2-168 (211)
197 KOG0394 Ras-related GTPase [Ge 99.6 1.5E-14 3.2E-19 124.9 11.0 160 160-358 6-180 (210)
198 cd04161 Arl2l1_Arl13_like Arl2 99.6 1.2E-14 2.7E-19 130.1 10.9 147 165-353 1-166 (167)
199 PLN03108 Rab family protein; P 99.6 2.1E-14 4.5E-19 133.6 12.7 155 163-356 6-168 (210)
200 KOG0078 GTP-binding protein SE 99.6 3.8E-14 8.2E-19 126.1 13.3 159 160-357 9-175 (207)
201 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.9E-14 4.2E-19 134.2 12.0 151 164-354 2-174 (222)
202 TIGR00437 feoB ferrous iron tr 99.6 2.8E-14 6.2E-19 151.3 14.7 151 170-355 1-154 (591)
203 cd01876 YihA_EngB The YihA (En 99.6 7.3E-14 1.6E-18 124.4 15.2 160 165-354 1-169 (170)
204 cd04129 Rho2 Rho2 subfamily. 99.6 3.8E-14 8.3E-19 129.4 13.5 153 164-356 2-173 (187)
205 PRK10512 selenocysteinyl-tRNA- 99.6 5.5E-14 1.2E-18 149.4 16.7 153 165-357 2-167 (614)
206 cd04137 RheB Rheb (Ras Homolog 99.6 2.3E-14 5E-19 129.9 11.8 155 164-358 2-165 (180)
207 cd04162 Arl9_Arfrp2_like Arl9/ 99.6 1.6E-14 3.4E-19 129.1 10.3 147 165-352 1-162 (164)
208 cd04159 Arl10_like Arl10-like 99.6 3.8E-14 8.2E-19 124.9 12.6 147 166-353 2-158 (159)
209 smart00176 RAN Ran (Ras-relate 99.6 1.8E-14 3.9E-19 132.5 10.6 148 169-356 1-154 (200)
210 cd04165 GTPBP1_like GTPBP1-lik 99.6 5.2E-14 1.1E-18 131.7 13.7 149 165-353 1-220 (224)
211 KOG0098 GTPase Rab2, small G p 99.6 3.7E-14 8E-19 122.7 11.5 155 163-356 6-168 (216)
212 TIGR01393 lepA GTP-binding pro 99.6 4.5E-14 9.7E-19 149.8 14.5 156 163-358 3-182 (595)
213 cd04103 Centaurin_gamma Centau 99.5 5.4E-14 1.2E-18 124.7 12.7 144 164-353 1-156 (158)
214 KOG2485 Conserved ATP/GTP bind 99.5 4.3E-14 9.4E-19 132.5 12.3 164 264-435 38-211 (335)
215 TIGR01394 TypA_BipA GTP-bindin 99.5 5.4E-14 1.2E-18 148.8 14.6 155 164-358 2-193 (594)
216 PF00025 Arf: ADP-ribosylation 99.5 5.8E-14 1.3E-18 126.7 12.4 152 161-354 12-174 (175)
217 cd01883 EF1_alpha Eukaryotic e 99.5 7.3E-14 1.6E-18 130.7 13.5 142 165-345 1-194 (219)
218 PRK04004 translation initiatio 99.5 1E-13 2.2E-18 146.6 15.2 152 161-354 4-216 (586)
219 PF03193 DUF258: Protein of un 99.5 2.7E-15 6E-20 130.7 2.8 91 324-436 6-103 (161)
220 COG3596 Predicted GTPase [Gene 99.5 5.1E-14 1.1E-18 130.1 11.2 166 160-356 36-222 (296)
221 PRK10218 GTP-binding protein; 99.5 1E-13 2.3E-18 146.4 15.1 157 162-358 4-197 (607)
222 PRK05433 GTP-binding protein L 99.5 1.2E-13 2.6E-18 146.6 14.7 157 162-358 6-186 (600)
223 cd01873 RhoBTB RhoBTB subfamil 99.5 6.3E-14 1.4E-18 128.6 10.8 151 163-353 2-193 (195)
224 CHL00071 tufA elongation facto 99.5 1.2E-13 2.5E-18 141.2 13.6 142 162-343 11-180 (409)
225 cd01886 EF-G Elongation factor 99.5 1.6E-13 3.4E-18 132.0 12.9 114 165-318 1-131 (270)
226 cd04168 TetM_like Tet(M)-like 99.5 2.9E-13 6.4E-18 127.8 14.5 113 165-317 1-130 (237)
227 PRK12736 elongation factor Tu; 99.5 1.6E-13 3.4E-18 139.6 13.3 155 162-356 11-201 (394)
228 KOG0462 Elongation factor-type 99.5 8E-14 1.7E-18 139.0 10.5 160 161-360 58-239 (650)
229 TIGR03680 eif2g_arch translati 99.5 2.1E-13 4.6E-18 139.2 13.9 156 162-356 3-196 (406)
230 TIGR00436 era GTP-binding prot 99.5 1.2E-13 2.6E-18 133.5 11.2 100 373-480 2-101 (270)
231 KOG0080 GTPase Rab18, small G 99.5 1.1E-13 2.3E-18 116.6 9.0 156 163-359 11-177 (209)
232 PTZ00132 GTP-binding nuclear p 99.5 4.2E-13 9.2E-18 125.3 14.3 159 160-356 6-168 (215)
233 KOG0073 GTP-binding ADP-ribosy 99.5 1.5E-13 3.2E-18 116.5 9.9 152 163-356 16-178 (185)
234 cd01899 Ygr210 Ygr210 subfamil 99.5 3E-13 6.5E-18 132.4 13.0 161 166-358 1-271 (318)
235 PRK04000 translation initiatio 99.5 2.8E-13 6.2E-18 138.1 13.3 157 161-356 7-201 (411)
236 PF00071 Ras: Ras family; Int 99.5 1.6E-13 3.5E-18 121.9 10.2 151 165-355 1-160 (162)
237 TIGR02034 CysN sulfate adenyly 99.5 4.5E-13 9.7E-18 136.7 14.4 144 164-346 1-187 (406)
238 PRK12735 elongation factor Tu; 99.5 3.9E-13 8.4E-18 136.8 13.0 155 162-356 11-203 (396)
239 PLN03127 Elongation factor Tu; 99.5 7.1E-13 1.5E-17 136.1 14.6 156 161-356 59-252 (447)
240 KOG1145 Mitochondrial translat 99.5 2.6E-13 5.7E-18 135.2 10.8 154 159-353 149-313 (683)
241 PRK05124 cysN sulfate adenylyl 99.5 6.5E-13 1.4E-17 137.6 14.3 148 162-348 26-217 (474)
242 cd04104 p47_IIGP_like p47 (47- 99.5 7.3E-13 1.6E-17 121.9 12.6 156 164-358 2-186 (197)
243 PRK00089 era GTPase Era; Revie 99.5 3.8E-13 8.2E-18 131.8 11.2 104 372-482 6-109 (292)
244 KOG0087 GTPase Rab11/YPT3, sma 99.5 4.9E-13 1.1E-17 118.5 10.6 156 162-356 13-176 (222)
245 PRK15494 era GTPase Era; Provi 99.4 4.1E-13 8.8E-18 133.6 11.2 103 372-481 53-155 (339)
246 cd04169 RF3 RF3 subfamily. Pe 99.4 2E-12 4.2E-17 124.3 15.2 117 163-319 2-139 (267)
247 cd00882 Ras_like_GTPase Ras-li 99.4 2.8E-13 6.2E-18 117.6 8.7 146 168-352 1-156 (157)
248 KOG0410 Predicted GTP binding 99.4 2.6E-13 5.6E-18 127.3 8.7 186 131-356 147-341 (410)
249 KOG0095 GTPase Rab30, small G 99.4 6.7E-13 1.5E-17 110.3 10.1 154 163-355 7-168 (213)
250 TIGR00483 EF-1_alpha translati 99.4 1.3E-12 2.7E-17 134.6 14.7 146 162-346 6-197 (426)
251 PF04548 AIG1: AIG1 family; I 99.4 3.9E-13 8.5E-18 125.0 9.9 168 164-359 1-189 (212)
252 TIGR00991 3a0901s02IAP34 GTP-b 99.4 3.4E-13 7.3E-18 129.4 9.6 107 370-482 37-144 (313)
253 PRK00049 elongation factor Tu; 99.4 8.8E-13 1.9E-17 134.1 13.1 154 162-355 11-202 (396)
254 TIGR00485 EF-Tu translation el 99.4 1.3E-12 2.7E-17 133.1 14.1 141 162-342 11-179 (394)
255 PRK09866 hypothetical protein; 99.4 1.9E-12 4.1E-17 133.3 15.0 91 264-354 250-351 (741)
256 PRK05506 bifunctional sulfate 99.4 1.2E-12 2.7E-17 141.0 14.4 146 162-346 23-211 (632)
257 PRK05291 trmE tRNA modificatio 99.4 7.1E-13 1.5E-17 136.6 11.5 104 369-479 213-316 (449)
258 cd01853 Toc34_like Toc34-like 99.4 9.1E-13 2E-17 124.9 10.9 109 369-482 29-140 (249)
259 PLN03126 Elongation factor Tu; 99.4 1.7E-12 3.7E-17 133.9 13.8 142 162-343 80-249 (478)
260 KOG0079 GTP-binding protein H- 99.4 1.4E-12 3E-17 108.4 10.0 155 163-356 8-169 (198)
261 cd04170 EF-G_bact Elongation f 99.4 1.8E-12 3.9E-17 125.3 12.4 148 165-352 1-169 (268)
262 TIGR03156 GTP_HflX GTP-binding 99.4 1.3E-12 2.9E-17 130.1 11.8 100 370-476 188-287 (351)
263 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.4E-12 3E-17 133.7 11.4 103 368-477 200-302 (442)
264 PRK00007 elongation factor G; 99.4 2.3E-12 5E-17 140.0 13.4 120 161-320 8-144 (693)
265 PTZ00327 eukaryotic translatio 99.4 2.9E-12 6.2E-17 131.4 12.9 158 160-356 31-233 (460)
266 cd04167 Snu114p Snu114p subfam 99.4 4.7E-12 1E-16 118.0 13.3 113 164-316 1-136 (213)
267 PRK09602 translation-associate 99.4 6E-12 1.3E-16 127.0 15.0 88 164-283 2-113 (396)
268 PTZ00141 elongation factor 1- 99.4 4.2E-12 9.1E-17 130.6 14.1 145 162-346 6-203 (446)
269 KOG0070 GTP-binding ADP-ribosy 99.4 9E-13 1.9E-17 114.9 6.8 155 160-356 14-178 (181)
270 cd01853 Toc34_like Toc34-like 99.4 7.1E-12 1.5E-16 118.8 13.5 129 162-318 30-164 (249)
271 TIGR00484 EF-G translation elo 99.4 4.6E-12 1E-16 137.8 13.9 119 161-319 8-143 (689)
272 KOG0093 GTPase Rab3, small G p 99.4 3.4E-12 7.4E-17 106.0 9.5 155 163-357 21-184 (193)
273 cd04164 trmE TrmE (MnmE, ThdF, 99.4 5.4E-12 1.2E-16 111.1 11.3 102 372-480 2-103 (157)
274 PRK12739 elongation factor G; 99.4 6E-12 1.3E-16 136.8 14.0 118 162-319 7-141 (691)
275 KOG1490 GTP-binding protein CR 99.4 2.2E-12 4.7E-17 127.5 9.5 164 160-354 165-339 (620)
276 TIGR00991 3a0901s02IAP34 GTP-b 99.4 6.8E-12 1.5E-16 120.5 12.6 127 161-318 36-168 (313)
277 PF08477 Miro: Miro-like prote 99.3 2.8E-12 6.2E-17 107.8 8.2 112 165-314 1-119 (119)
278 cd01885 EF2 EF2 (for archaea a 99.3 9.1E-12 2E-16 116.1 12.0 113 164-316 1-138 (222)
279 TIGR00993 3a0901s04IAP86 chlor 99.3 4.3E-12 9.2E-17 131.1 10.4 106 371-482 118-227 (763)
280 cd01895 EngA2 EngA2 subfamily. 99.3 8.5E-12 1.8E-16 111.6 11.1 106 372-481 3-108 (174)
281 PRK13351 elongation factor G; 99.3 1.1E-11 2.4E-16 135.0 13.9 116 162-317 7-139 (687)
282 PRK11058 GTPase HflX; Provisio 99.3 6.8E-12 1.5E-16 127.9 11.3 98 372-476 198-295 (426)
283 PRK12298 obgE GTPase CgtA; Rev 99.3 4.7E-12 1E-16 127.7 9.9 89 372-468 160-248 (390)
284 COG1217 TypA Predicted membran 99.3 8.4E-11 1.8E-15 115.5 17.3 158 162-359 4-198 (603)
285 COG2229 Predicted GTPase [Gene 99.3 3.8E-11 8.2E-16 104.6 13.2 154 162-354 9-176 (187)
286 KOG0468 U5 snRNP-specific prot 99.3 3.9E-12 8.5E-17 129.0 8.2 158 119-316 67-262 (971)
287 KOG1423 Ras-like GTPase ERA [C 99.3 4.4E-12 9.5E-17 118.4 7.8 98 369-469 70-167 (379)
288 COG0218 Predicted GTPase [Gene 99.3 1.5E-11 3.3E-16 109.6 9.2 108 370-482 23-131 (200)
289 cd01894 EngA1 EngA1 subfamily. 99.3 1.7E-11 3.7E-16 108.0 9.4 100 375-481 1-100 (157)
290 KOG0075 GTP-binding ADP-ribosy 99.3 4.6E-12 1E-16 105.3 5.3 153 163-356 20-182 (186)
291 COG0481 LepA Membrane GTPase L 99.3 1.6E-11 3.6E-16 120.7 9.9 159 162-360 8-190 (603)
292 cd01850 CDC_Septin CDC/Septin. 99.3 8.3E-11 1.8E-15 113.6 14.7 136 163-318 4-158 (276)
293 cd04102 RabL3 RabL3 (Rab-like3 99.3 4.1E-11 8.9E-16 110.2 11.8 114 164-318 1-144 (202)
294 cd04163 Era Era subfamily. Er 99.3 3.7E-11 7.9E-16 106.5 10.8 103 372-481 4-106 (168)
295 TIGR03598 GTPase_YsxC ribosome 99.3 2.8E-11 6.1E-16 109.6 10.1 106 369-481 16-124 (179)
296 KOG1486 GTP-binding protein DR 99.3 4E-11 8.6E-16 108.8 10.7 97 155-283 54-150 (364)
297 PRK00741 prfC peptide chain re 99.3 6.7E-11 1.4E-15 123.8 14.1 118 162-319 9-147 (526)
298 PLN00043 elongation factor 1-a 99.2 6.9E-11 1.5E-15 121.6 13.6 145 162-346 6-203 (447)
299 cd04105 SR_beta Signal recogni 99.2 5.4E-11 1.2E-15 109.9 11.5 113 164-318 1-124 (203)
300 cd01900 YchF YchF subfamily. 99.2 1.9E-11 4.1E-16 116.9 8.6 87 374-468 1-103 (274)
301 KOG0086 GTPase Rab4, small G p 99.2 5.7E-11 1.2E-15 99.3 10.0 149 163-353 9-168 (214)
302 PRK09601 GTP-binding protein Y 99.2 3.3E-11 7.1E-16 118.9 10.2 89 372-468 3-107 (364)
303 PTZ00258 GTP-binding protein; 99.2 3.1E-11 6.6E-16 120.5 10.1 91 370-468 20-126 (390)
304 KOG0088 GTPase Rab21, small G 99.2 1.2E-11 2.5E-16 104.1 5.4 156 162-356 12-175 (218)
305 COG5256 TEF1 Translation elong 99.2 1.2E-10 2.7E-15 113.7 13.1 146 162-346 6-201 (428)
306 PLN00023 GTP-binding protein; 99.2 6.7E-11 1.4E-15 114.4 11.1 121 158-318 16-166 (334)
307 cd01898 Obg Obg subfamily. Th 99.2 4.2E-11 9E-16 107.2 8.9 89 373-470 2-91 (170)
308 KOG0395 Ras-related GTPase [Ge 99.2 7.2E-11 1.6E-15 107.9 10.4 155 163-357 3-166 (196)
309 COG4917 EutP Ethanolamine util 99.2 4E-11 8.7E-16 97.2 7.5 140 164-354 2-144 (148)
310 TIGR00503 prfC peptide chain r 99.2 5.2E-11 1.1E-15 124.6 10.6 116 162-317 10-146 (527)
311 PRK14845 translation initiatio 99.2 1.3E-10 2.9E-15 128.4 13.7 149 162-355 464-672 (1049)
312 cd01882 BMS1 Bms1. Bms1 is an 99.2 3.8E-10 8.3E-15 105.9 14.9 136 161-344 37-184 (225)
313 PRK12299 obgE GTPase CgtA; Rev 99.2 8.2E-11 1.8E-15 116.4 10.3 91 372-470 159-249 (335)
314 COG0488 Uup ATPase components 99.2 2.5E-11 5.5E-16 126.1 6.7 61 245-309 143-206 (530)
315 PRK12740 elongation factor G; 99.2 1.5E-10 3.2E-15 126.1 12.6 108 169-316 1-125 (668)
316 KOG0091 GTPase Rab39, small G 99.2 1.4E-10 3E-15 98.3 9.0 153 164-357 9-174 (213)
317 COG1100 GTPase SAR1 and relate 99.2 2.3E-10 5E-15 107.0 11.3 154 164-356 6-185 (219)
318 cd01881 Obg_like The Obg-like 99.1 5.9E-11 1.3E-15 106.7 6.6 87 376-470 1-87 (176)
319 COG3596 Predicted GTPase [Gene 99.1 8.2E-11 1.8E-15 109.1 7.5 102 371-480 39-140 (296)
320 COG0012 Predicted GTPase, prob 99.1 5.8E-10 1.3E-14 108.4 13.6 69 163-232 2-88 (372)
321 PRK00454 engB GTP-binding prot 99.1 1.9E-10 4.1E-15 105.6 9.7 104 370-480 23-129 (196)
322 cd04166 CysN_ATPS CysN_ATPS su 99.1 9.5E-11 2.1E-15 108.8 7.7 91 373-478 1-121 (208)
323 cd04171 SelB SelB subfamily. 99.1 2.4E-10 5.2E-15 101.4 9.9 91 373-477 2-94 (164)
324 cd01878 HflX HflX subfamily. 99.1 3.7E-10 7.9E-15 104.5 11.1 98 371-475 41-138 (204)
325 KOG0081 GTPase Rab27, small G 99.1 8.5E-11 1.8E-15 99.0 5.8 152 164-357 10-182 (219)
326 cd01900 YchF YchF subfamily. 99.1 1.8E-10 3.9E-15 110.2 8.6 86 166-283 1-103 (274)
327 PRK09601 GTP-binding protein Y 99.1 2.6E-10 5.6E-15 112.6 9.8 88 164-283 3-107 (364)
328 KOG0083 GTPase Rab26/Rab37, sm 99.1 2.2E-11 4.8E-16 99.4 1.9 151 168-358 2-162 (192)
329 TIGR02836 spore_IV_A stage IV 99.1 7E-10 1.5E-14 109.1 12.3 166 162-340 16-219 (492)
330 PTZ00258 GTP-binding protein; 99.1 3.3E-10 7.2E-15 113.2 10.0 90 162-283 20-126 (390)
331 KOG0072 GTP-binding ADP-ribosy 99.1 2E-10 4.4E-15 95.3 6.9 153 162-356 17-179 (182)
332 KOG0071 GTP-binding ADP-ribosy 99.1 5.2E-10 1.1E-14 92.4 9.3 152 163-356 17-178 (180)
333 COG0370 FeoB Fe2+ transport sy 99.1 3.1E-10 6.7E-15 117.8 9.7 103 372-483 4-106 (653)
334 TIGR00993 3a0901s04IAP86 chlor 99.1 1.1E-09 2.3E-14 113.6 13.6 128 162-317 117-250 (763)
335 PLN00116 translation elongatio 99.1 6.5E-10 1.4E-14 123.1 12.7 115 162-316 18-163 (843)
336 KOG0076 GTP-binding ADP-ribosy 99.1 1.5E-10 3.2E-15 99.4 5.8 158 163-358 17-189 (197)
337 PRK12297 obgE GTPase CgtA; Rev 99.1 3.9E-10 8.4E-15 114.5 9.9 90 372-469 159-248 (424)
338 KOG0074 GTP-binding ADP-ribosy 99.1 3.8E-10 8.1E-15 93.4 7.6 153 161-355 15-178 (185)
339 PRK13768 GTPase; Provisional 99.1 8.1E-10 1.8E-14 105.5 11.2 84 273-356 129-247 (253)
340 smart00053 DYNc Dynamin, GTPas 99.1 2.1E-09 4.5E-14 100.9 13.5 56 262-319 151-208 (240)
341 PTZ00416 elongation factor 2; 99.1 5.4E-10 1.2E-14 123.5 11.2 115 162-316 18-157 (836)
342 cd01879 FeoB Ferrous iron tran 99.1 3.5E-10 7.6E-15 99.7 7.9 86 376-469 1-86 (158)
343 PRK12296 obgE GTPase CgtA; Rev 99.1 3.6E-10 7.8E-15 116.2 9.0 90 371-469 159-248 (500)
344 COG2895 CysN GTPases - Sulfate 99.1 5.2E-10 1.1E-14 106.7 9.3 146 161-345 4-192 (431)
345 cd01884 EF_Tu EF-Tu subfamily. 99.1 5.3E-10 1.1E-14 102.4 9.2 95 372-481 3-112 (195)
346 COG1084 Predicted GTPase [Gene 99.1 7.3E-10 1.6E-14 105.3 10.0 92 370-469 167-259 (346)
347 TIGR02729 Obg_CgtA Obg family 99.1 5.1E-10 1.1E-14 110.7 9.0 90 372-469 158-247 (329)
348 PF00350 Dynamin_N: Dynamin fa 99.1 1.2E-09 2.7E-14 97.6 10.8 49 264-313 120-168 (168)
349 PF09439 SRPRB: Signal recogni 99.0 7.3E-10 1.6E-14 98.9 9.0 115 163-318 3-127 (181)
350 COG2262 HflX GTPases [General 99.0 7E-10 1.5E-14 108.6 9.6 104 369-479 190-293 (411)
351 COG3276 SelB Selenocysteine-sp 99.0 4E-09 8.6E-14 104.0 14.8 153 165-356 2-162 (447)
352 TIGR00490 aEF-2 translation el 99.0 5.9E-10 1.3E-14 121.7 9.9 115 163-317 19-152 (720)
353 cd01897 NOG NOG1 is a nucleola 99.0 1.3E-09 2.9E-14 97.2 9.9 91 372-470 1-92 (168)
354 cd01896 DRG The developmentall 99.0 9.9E-10 2.1E-14 103.6 9.1 88 373-469 2-89 (233)
355 KOG0461 Selenocysteine-specifi 99.0 4.1E-09 8.9E-14 100.0 12.9 154 163-356 7-193 (522)
356 KOG0097 GTPase Rab14, small G 99.0 2.5E-09 5.3E-14 88.3 9.9 149 162-352 10-169 (215)
357 PF04670 Gtr1_RagA: Gtr1/RagA 99.0 2E-09 4.3E-14 100.4 10.6 122 165-319 1-127 (232)
358 KOG1487 GTP-binding protein DR 99.0 7.6E-10 1.6E-14 101.1 7.4 164 159-357 55-282 (358)
359 KOG2486 Predicted GTPase [Gene 99.0 3.7E-09 8.1E-14 97.9 11.9 168 154-354 127-314 (320)
360 COG5257 GCD11 Translation init 99.0 1.4E-09 3E-14 102.5 9.0 159 161-358 8-204 (415)
361 cd01887 IF2_eIF5B IF2/eIF5B (i 99.0 2.4E-09 5.3E-14 95.4 10.4 92 373-479 2-95 (168)
362 PF05049 IIGP: Interferon-indu 99.0 9E-10 2E-14 108.8 7.6 157 163-358 35-220 (376)
363 PTZ00099 rab6; Provisional 99.0 2E-09 4.4E-14 97.0 9.1 91 268-358 48-144 (176)
364 PRK04213 GTP-binding protein; 99.0 1.3E-09 2.9E-14 100.5 8.1 91 371-469 9-102 (201)
365 PRK09554 feoB ferrous iron tra 99.0 2E-09 4.3E-14 117.3 10.4 94 372-469 4-97 (772)
366 PF00350 Dynamin_N: Dynamin fa 99.0 1.8E-09 3.9E-14 96.6 8.4 96 374-480 1-151 (168)
367 PRK09435 membrane ATPase/prote 99.0 6.6E-09 1.4E-13 102.1 12.5 83 270-358 167-262 (332)
368 cd01899 Ygr210 Ygr210 subfamil 99.0 2.2E-09 4.8E-14 105.3 9.2 88 374-469 1-111 (318)
369 PRK07560 elongation factor EF- 99.0 2.9E-09 6.3E-14 116.6 11.1 115 162-316 19-152 (731)
370 KOG0393 Ras-related small GTPa 99.0 1.8E-09 3.9E-14 96.8 7.6 153 163-355 4-178 (198)
371 KOG0927 Predicted transporter 99.0 3.5E-09 7.7E-14 106.5 10.4 68 245-314 209-280 (614)
372 COG0480 FusA Translation elong 98.9 4.3E-09 9.2E-14 112.5 11.7 119 161-319 8-144 (697)
373 cd00880 Era_like Era (E. coli 98.9 3.9E-09 8.4E-14 92.4 9.6 95 376-477 1-95 (163)
374 cd01886 EF-G Elongation factor 98.9 3.2E-09 6.9E-14 102.2 9.3 94 373-481 1-111 (270)
375 CHL00071 tufA elongation facto 98.9 3.5E-09 7.5E-14 108.4 9.7 97 370-481 11-122 (409)
376 PRK09602 translation-associate 98.9 3.6E-09 7.8E-14 107.0 9.3 89 372-468 2-113 (396)
377 cd01889 SelB_euk SelB subfamil 98.9 5E-09 1.1E-13 96.0 8.9 91 373-477 2-111 (192)
378 cd00881 GTP_translation_factor 98.9 5E-09 1.1E-13 95.2 8.4 93 373-480 1-108 (189)
379 cd04104 p47_IIGP_like p47 (47- 98.9 5.3E-09 1.1E-13 96.2 8.6 98 372-482 2-103 (197)
380 PRK12317 elongation factor 1-a 98.9 3.5E-09 7.5E-14 109.2 7.3 94 371-479 6-131 (425)
381 cd01876 YihA_EngB The YihA (En 98.9 8.2E-09 1.8E-13 91.6 8.6 101 374-481 2-105 (170)
382 cd01891 TypA_BipA TypA (tyrosi 98.9 1E-08 2.2E-13 94.1 9.3 94 372-480 3-111 (194)
383 KOG0090 Signal recognition par 98.8 1.3E-08 2.8E-13 90.8 9.0 113 163-317 38-159 (238)
384 PLN03127 Elongation factor Tu; 98.8 1.1E-08 2.3E-13 105.4 9.9 96 371-481 61-171 (447)
385 PRK15467 ethanolamine utilizat 98.8 7.4E-09 1.6E-13 91.7 7.6 83 373-478 3-85 (158)
386 cd01890 LepA LepA subfamily. 98.8 1E-08 2.3E-13 92.5 8.8 92 373-478 2-111 (179)
387 PRK13549 xylose transporter AT 98.8 3.6E-08 7.9E-13 104.1 13.9 33 363-395 280-312 (506)
388 KOG0077 Vesicle coat complex C 98.8 1.4E-08 3E-13 86.7 8.5 115 163-319 20-137 (193)
389 PRK15134 microcin C ABC transp 98.8 3.4E-08 7.3E-13 104.9 13.4 33 363-395 304-336 (529)
390 cd01850 CDC_Septin CDC/Septin. 98.8 1.3E-08 2.8E-13 98.4 9.3 110 372-482 5-140 (276)
391 PRK10982 galactose/methyl gala 98.8 1.4E-08 3E-13 106.8 10.3 32 364-395 267-298 (491)
392 KOG0458 Elongation factor 1 al 98.8 3E-08 6.6E-13 100.6 12.1 146 162-346 176-372 (603)
393 TIGR03269 met_CoM_red_A2 methy 98.8 1.9E-08 4.1E-13 106.6 11.3 32 364-395 303-334 (520)
394 KOG4252 GTP-binding protein [S 98.8 1.9E-09 4E-14 92.8 2.8 156 162-357 19-182 (246)
395 cd01861 Rab6 Rab6 subfamily. 98.8 1.5E-08 3.3E-13 89.6 8.8 89 373-477 2-94 (161)
396 COG1163 DRG Predicted GTPase [ 98.8 3.1E-09 6.8E-14 100.6 4.4 89 372-469 64-152 (365)
397 PRK10762 D-ribose transporter 98.8 1.8E-08 4E-13 106.2 10.6 33 363-395 270-302 (501)
398 PF05049 IIGP: Interferon-indu 98.8 4.7E-09 1E-13 103.8 5.5 96 371-482 35-137 (376)
399 PRK12735 elongation factor Tu; 98.8 1.6E-08 3.4E-13 103.2 9.4 96 370-480 11-121 (396)
400 PRK09866 hypothetical protein; 98.8 2.4E-08 5.3E-13 103.5 10.7 54 420-482 230-283 (741)
401 PF00009 GTP_EFTU: Elongation 98.8 1.2E-08 2.7E-13 93.1 7.5 96 372-481 4-117 (188)
402 PRK11288 araG L-arabinose tran 98.8 1.4E-08 3.1E-13 107.0 9.0 32 364-395 272-303 (501)
403 PRK15439 autoinducer 2 ABC tra 98.8 8.4E-08 1.8E-12 101.3 14.6 33 363-395 281-313 (510)
404 PF00735 Septin: Septin; Inte 98.8 9.3E-08 2E-12 92.4 13.0 139 163-321 4-160 (281)
405 TIGR02633 xylG D-xylose ABC tr 98.8 7.4E-08 1.6E-12 101.7 13.4 33 363-395 278-310 (500)
406 cd04178 Nucleostemin_like Nucl 98.8 1.5E-08 3.2E-13 90.7 6.9 57 162-221 116-172 (172)
407 PRK00049 elongation factor Tu; 98.8 2.2E-08 4.8E-13 102.0 8.9 97 370-481 11-122 (396)
408 cd04154 Arl2 Arl2 subfamily. 98.8 3.4E-08 7.5E-13 88.7 9.0 81 371-470 14-94 (173)
409 cd04142 RRP22 RRP22 subfamily. 98.8 2.9E-08 6.3E-13 91.3 8.6 90 373-470 2-93 (198)
410 TIGR02528 EutP ethanolamine ut 98.7 2.3E-08 5E-13 86.6 7.3 82 373-478 2-83 (142)
411 TIGR00750 lao LAO/AO transport 98.7 2E-07 4.3E-12 91.5 14.6 81 270-356 145-238 (300)
412 TIGR00073 hypB hydrogenase acc 98.7 2.2E-08 4.7E-13 92.9 7.4 52 303-354 148-205 (207)
413 cd04169 RF3 RF3 subfamily. Pe 98.7 4.5E-08 9.7E-13 94.2 9.7 94 372-480 3-117 (267)
414 smart00178 SAR Sar1p-like memb 98.7 4.9E-08 1.1E-12 88.8 9.5 81 371-470 17-97 (184)
415 KOG0066 eIF2-interacting prote 98.7 1E-07 2.3E-12 93.5 12.1 27 163-189 290-316 (807)
416 PRK09700 D-allose transporter 98.7 1.2E-07 2.6E-12 100.3 13.8 33 363-395 281-313 (510)
417 cd01858 NGP_1 NGP-1. Autoanti 98.7 2E-08 4.3E-13 88.9 6.7 56 163-221 102-157 (157)
418 KOG1489 Predicted GTP-binding 98.7 1.6E-08 3.6E-13 95.4 6.3 91 372-470 197-287 (366)
419 cd04168 TetM_like Tet(M)-like 98.7 3.1E-08 6.8E-13 93.6 8.3 93 373-480 1-110 (237)
420 cd04160 Arfrp1 Arfrp1 subfamil 98.7 3.2E-08 7E-13 88.1 8.0 83 373-470 1-86 (167)
421 cd04156 ARLTS1 ARLTS1 subfamil 98.7 4.1E-08 9E-13 86.8 8.5 80 373-470 1-80 (160)
422 KOG3883 Ras family small GTPas 98.7 2E-07 4.3E-12 78.5 11.6 158 163-357 9-176 (198)
423 TIGR00101 ureG urease accessor 98.7 7.5E-08 1.6E-12 88.4 10.1 77 273-355 113-195 (199)
424 KOG1707 Predicted Ras related/ 98.7 3.3E-08 7.2E-13 100.3 8.3 148 161-349 7-168 (625)
425 cd04155 Arl3 Arl3 subfamily. 98.7 5.3E-08 1.2E-12 87.3 8.8 80 371-469 14-93 (173)
426 PRK10636 putative ABC transpor 98.7 7.7E-08 1.7E-12 104.1 11.6 62 250-313 142-206 (638)
427 cd00154 Rab Rab family. Rab G 98.7 4.8E-08 1E-12 85.6 8.3 82 373-469 2-84 (159)
428 cd01885 EF2 EF2 (for archaea a 98.7 5.9E-08 1.3E-12 90.5 9.1 95 373-481 2-120 (222)
429 TIGR00231 small_GTP small GTP- 98.7 2.3E-08 4.9E-13 87.4 6.1 58 372-431 2-61 (161)
430 PRK10938 putative molybdenum t 98.7 5.7E-08 1.2E-12 102.3 10.1 32 363-394 278-309 (490)
431 KOG1532 GTPase XAB1, interacts 98.7 7.7E-08 1.7E-12 89.0 9.5 84 273-358 148-266 (366)
432 COG1122 CbiO ABC-type cobalt t 98.7 9.6E-08 2.1E-12 89.5 10.4 139 163-315 30-201 (235)
433 COG4108 PrfC Peptide chain rel 98.7 1E-07 2.2E-12 93.6 10.8 118 163-320 12-150 (528)
434 PRK00007 elongation factor G; 98.7 5.1E-08 1.1E-12 106.3 9.7 96 371-481 10-122 (693)
435 cd04170 EF-G_bact Elongation f 98.7 5.6E-08 1.2E-12 93.9 8.9 93 373-480 1-110 (268)
436 TIGR00437 feoB ferrous iron tr 98.7 5E-08 1.1E-12 103.9 9.2 84 378-469 1-84 (591)
437 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.7 6.5E-08 1.4E-12 87.9 8.7 85 372-470 4-88 (183)
438 TIGR00484 EF-G translation elo 98.7 5.2E-08 1.1E-12 106.3 9.4 96 371-481 10-122 (689)
439 PRK05506 bifunctional sulfate 98.7 3.7E-08 8.1E-13 106.4 8.1 91 371-476 24-146 (632)
440 PRK12736 elongation factor Tu; 98.7 5.4E-08 1.2E-12 99.2 8.8 96 371-481 12-122 (394)
441 KOG0096 GTPase Ran/TC4/GSP1 (n 98.7 9.1E-08 2E-12 83.6 8.8 159 163-359 10-172 (216)
442 PRK12739 elongation factor G; 98.7 5E-08 1.1E-12 106.4 9.0 96 371-481 8-120 (691)
443 TIGR00485 EF-Tu translation el 98.7 6.7E-08 1.4E-12 98.6 9.3 97 370-481 11-122 (394)
444 cd01882 BMS1 Bms1. Bms1 is an 98.7 9.8E-08 2.1E-12 89.6 9.5 90 369-481 37-127 (225)
445 TIGR00487 IF-2 translation ini 98.7 8.5E-08 1.8E-12 101.7 10.1 95 370-479 86-180 (587)
446 COG0050 TufB GTPases - transla 98.7 1.9E-07 4.1E-12 87.2 10.9 158 161-358 10-203 (394)
447 KOG0410 Predicted GTP binding 98.7 8.4E-08 1.8E-12 90.8 8.7 104 369-479 176-279 (410)
448 PRK10512 selenocysteinyl-tRNA- 98.7 8.6E-08 1.9E-12 102.4 10.0 94 373-480 2-97 (614)
449 cd04149 Arf6 Arf6 subfamily. 98.7 1.1E-07 2.4E-12 85.1 9.2 87 371-476 9-97 (168)
450 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.7 9.1E-08 2E-12 86.1 8.6 80 372-470 16-95 (174)
451 TIGR00092 GTP-binding protein 98.7 9.1E-08 2E-12 94.7 9.1 89 164-283 3-108 (368)
452 cd04157 Arl6 Arl6 subfamily. 98.7 7.5E-08 1.6E-12 85.2 7.9 80 373-471 1-82 (162)
453 CHL00189 infB translation init 98.6 1E-07 2.2E-12 102.7 10.1 97 370-481 243-342 (742)
454 KOG1491 Predicted GTP-binding 98.6 8.1E-08 1.8E-12 91.5 8.0 90 162-283 19-125 (391)
455 cd01863 Rab18 Rab18 subfamily. 98.6 7.9E-08 1.7E-12 85.0 7.5 83 373-470 2-85 (161)
456 KOG0062 ATPase component of AB 98.6 2.2E-08 4.8E-13 100.3 4.3 140 162-309 105-251 (582)
457 PRK05306 infB translation init 98.6 1.1E-07 2.5E-12 103.2 10.1 96 369-480 288-383 (787)
458 PRK10261 glutathione transport 98.6 9E-08 2E-12 103.4 9.2 32 364-395 343-374 (623)
459 cd01860 Rab5_related Rab5-rela 98.6 9.1E-08 2E-12 84.8 7.7 83 372-469 2-85 (163)
460 cd01866 Rab2 Rab2 subfamily. 98.6 1.1E-07 2.4E-12 85.0 8.2 83 372-469 5-88 (168)
461 cd00878 Arf_Arl Arf (ADP-ribos 98.6 9.6E-08 2.1E-12 84.3 7.7 79 373-470 1-79 (158)
462 cd00879 Sar1 Sar1 subfamily. 98.6 1.7E-07 3.7E-12 85.5 9.5 80 371-469 19-98 (190)
463 cd01851 GBP Guanylate-binding 98.6 1.4E-07 3E-12 88.5 8.9 88 372-467 8-101 (224)
464 smart00053 DYNc Dynamin, GTPas 98.6 2.7E-07 5.9E-12 86.7 10.9 111 370-481 25-187 (240)
465 TIGR02836 spore_IV_A stage IV 98.6 9.1E-08 2E-12 94.4 7.9 111 370-480 16-174 (492)
466 PLN03118 Rab family protein; P 98.6 9.4E-08 2E-12 88.9 7.8 85 371-470 14-98 (211)
467 cd04161 Arl2l1_Arl13_like Arl2 98.6 1.2E-07 2.6E-12 84.7 8.2 79 373-470 1-79 (167)
468 TIGR00092 GTP-binding protein 98.6 9.4E-08 2E-12 94.6 7.8 90 372-468 3-108 (368)
469 KOG1143 Predicted translation 98.6 2E-07 4.3E-12 89.6 9.7 152 163-352 167-384 (591)
470 smart00175 RAB Rab subfamily o 98.6 1.4E-07 3.1E-12 83.5 8.3 85 373-473 2-88 (164)
471 PRK11147 ABC transporter ATPas 98.6 6.5E-08 1.4E-12 104.8 6.9 57 254-312 153-212 (635)
472 cd04145 M_R_Ras_like M-Ras/R-R 98.6 1.4E-07 3.1E-12 83.6 7.9 82 372-470 3-86 (164)
473 TIGR00491 aIF-2 translation in 98.6 2.1E-07 4.6E-12 98.6 10.4 96 370-480 3-115 (590)
474 PF03308 ArgK: ArgK protein; 98.6 1.9E-08 4E-13 93.6 2.1 83 268-356 138-230 (266)
475 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.1E-07 2.4E-12 82.5 6.7 55 165-222 85-139 (141)
476 cd04158 ARD1 ARD1 subfamily. 98.6 1.6E-07 3.4E-12 84.1 7.9 87 373-478 1-89 (169)
477 COG1703 ArgK Putative periplas 98.6 2E-07 4.4E-12 87.8 8.7 83 269-357 161-255 (323)
478 PLN03126 Elongation factor Tu; 98.6 2E-07 4.4E-12 96.5 9.3 95 371-480 81-190 (478)
479 cd04167 Snu114p Snu114p subfam 98.6 1.6E-07 3.6E-12 87.4 7.8 92 373-478 2-115 (213)
480 cd04150 Arf1_5_like Arf1-Arf5- 98.6 2.9E-07 6.4E-12 81.5 9.0 79 373-470 2-80 (159)
481 cd04119 RJL RJL (RabJ-Like) su 98.6 2E-07 4.4E-12 82.8 8.0 83 373-470 2-85 (168)
482 cd04151 Arl1 Arl1 subfamily. 98.6 2.1E-07 4.6E-12 82.2 8.0 79 373-470 1-79 (158)
483 PRK15064 ABC transporter ATP-b 98.6 3.6E-07 7.7E-12 97.1 11.2 31 365-395 339-369 (530)
484 PRK05124 cysN sulfate adenylyl 98.6 2.1E-07 4.6E-12 96.8 9.2 91 371-476 27-149 (474)
485 cd01868 Rab11_like Rab11-like. 98.6 2.2E-07 4.9E-12 82.5 8.2 83 372-470 4-88 (165)
486 cd01883 EF1_alpha Eukaryotic e 98.6 1.9E-07 4.1E-12 87.4 8.0 83 373-470 1-113 (219)
487 PRK09563 rbgA GTPase YlqF; Rev 98.6 3.1E-07 6.7E-12 89.5 9.7 60 162-224 120-179 (287)
488 PLN03073 ABC transporter F fam 98.6 5.7E-08 1.2E-12 105.7 5.0 61 252-314 339-402 (718)
489 cd04159 Arl10_like Arl10-like 98.6 2.6E-07 5.7E-12 80.9 8.4 78 374-469 2-79 (159)
490 cd01865 Rab3 Rab3 subfamily. 98.5 2.1E-07 4.6E-12 82.8 7.8 83 373-470 3-86 (165)
491 cd01867 Rab8_Rab10_Rab13_like 98.5 2.1E-07 4.5E-12 83.1 7.7 83 372-470 4-88 (167)
492 cd01849 YlqF_related_GTPase Yl 98.5 1.3E-07 2.9E-12 83.4 6.3 57 162-221 99-155 (155)
493 TIGR00475 selB selenocysteine- 98.5 2.3E-07 5E-12 98.8 9.1 91 373-478 2-94 (581)
494 COG1161 Predicted GTPases [Gen 98.5 2.3E-07 5E-12 91.6 8.5 62 162-226 131-192 (322)
495 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.5 2.6E-07 5.6E-12 82.3 8.1 82 372-469 3-86 (166)
496 cd04113 Rab4 Rab4 subfamily. 98.5 2.2E-07 4.9E-12 82.2 7.5 84 373-471 2-86 (161)
497 COG0012 Predicted GTPase, prob 98.5 1.9E-07 4.1E-12 91.1 7.5 90 372-469 3-109 (372)
498 PF03029 ATP_bind_1: Conserved 98.5 2.2E-07 4.8E-12 87.7 7.8 83 273-355 123-236 (238)
499 TIGR02034 CysN sulfate adenyly 98.5 1.7E-07 3.8E-12 95.8 7.5 91 373-478 2-124 (406)
500 cd01893 Miro1 Miro1 subfamily. 98.5 2.7E-07 5.9E-12 82.3 7.9 85 373-474 2-87 (166)
No 1
>COG1160 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=1.3e-46 Score=368.42 Aligned_cols=280 Identities=54% Similarity=0.803 Sum_probs=243.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
+.|+|+|+||||||||+|+|+|+..+++.++||+|++..++...|.+..+.++||+|+..... .
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~--~-------------- 67 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDE--D-------------- 67 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCc--h--------------
Confidence 789999999999999999999999999999999999999999999999999999999975332 1
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
.+.+.+..++..++..+|+++||+|+..+.+..|..+.++|+.. ++|+++|+||+|.... ....
T Consensus 68 -------------~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~--~kpviLvvNK~D~~~~-e~~~ 131 (444)
T COG1160 68 -------------ELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRS--KKPVILVVNKIDNLKA-EELA 131 (444)
T ss_pred -------------HHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEEcccCchh-hhhH
Confidence 13344567899999999999999999999999999999999964 7999999999998733 3345
Q ss_pred HHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCC
Q 011492 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (484)
Q Consensus 324 ~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~ 402 (484)
.+++..|+ .++++||.+|.|+.+|++.+.+.++ ....... .......+|+++|+||+|||||+|+|+|..++.+++.
T Consensus 132 ~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~-~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~ 209 (444)
T COG1160 132 YEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP-PDEEEEE-EEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDI 209 (444)
T ss_pred HHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC-Ccccccc-cccCCceEEEEEeCCCCCchHHHHHhccCceEEecCC
Confidence 67888887 6899999999999999999999874 2211111 1112457999999999999999999999999999999
Q ss_pred CCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 403 ~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+||||+.+...+. ++++.+.+|||.|++..+.+. ...+.+.+.++.+++..+|++++|+|+..++++||++++..
T Consensus 210 aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~---e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~ 284 (444)
T COG1160 210 AGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKIT---ESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGL 284 (444)
T ss_pred CCccccceeeeEE-ECCeEEEEEECCCCCcccccc---cceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHH
Confidence 9999999999987 689999999999999988765 45778889999999999999999999999999999999854
No 2
>PRK03003 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=5.9e-36 Score=310.42 Aligned_cols=279 Identities=41% Similarity=0.651 Sum_probs=216.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+|+|.+|||||||+|+|++...+.+...+++|.+.......+.+..+.+|||||+..... .
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~---~------------ 102 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK---G------------ 102 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch---h------------
Confidence 5799999999999999999999987677788999999998888888999999999999863111 0
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
+...+..++..++..+|++|+|+|++.+.+..+..+..++... ++|+++|+||+|+..... .
T Consensus 103 ---------------~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~--~~piilV~NK~Dl~~~~~-~ 164 (472)
T PRK03003 103 ---------------LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRS--GKPVILAANKVDDERGEA-D 164 (472)
T ss_pred ---------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCccch-h
Confidence 1122335566778899999999999988777777777777764 899999999999865322 1
Q ss_pred hHHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecC
Q 011492 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (484)
Q Consensus 323 ~~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~ 401 (484)
...++..++ .++++||++|.|+++|++.+...+.+.... ........+|+++|.+|+|||||+|+|++.....+.+
T Consensus 165 ~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~~~~~---~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~ 241 (472)
T PRK03003 165 AAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPEVPRV---GSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDD 241 (472)
T ss_pred hHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccccccc---ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 223334444 468999999999999999998877542111 1111234699999999999999999999998777889
Q ss_pred CCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 402 ~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+|+|++.....+.. ++.++.+|||||++...... ...+.+...+....++.+|++++|+|+..+++.++..++..
T Consensus 242 ~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~---~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~ 317 (472)
T PRK03003 242 VAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA---SGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSM 317 (472)
T ss_pred CCCccCCcceEEEEE-CCEEEEEEECCCcccccccc---chHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999999987766653 67889999999997543211 12333444445567899999999999999999999877654
No 3
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=8.1e-36 Score=307.85 Aligned_cols=277 Identities=53% Similarity=0.822 Sum_probs=224.7
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|++|||||||+|+|++...+.+.+.+++|++.......+.+..+.+|||||+.....
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~------------------ 62 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDD------------------ 62 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcch------------------
Confidence 58999999999999999999988778889999999999999999999999999999853211
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 324 (484)
.+...+..++..++..+|++++|+|+..+.+..+..+..++.+. ++|+++|+||+|+...... ..
T Consensus 63 ------------~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~~-~~ 127 (429)
T TIGR03594 63 ------------GLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDAV-AA 127 (429)
T ss_pred ------------hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCccccc-HH
Confidence 11223446677788999999999999988888888888888875 8999999999998764322 23
Q ss_pred HHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC
Q 011492 325 EFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (484)
Q Consensus 325 ~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~ 403 (484)
.++..++ +++++||.+|.|+.++++.+...+...... ........+++++|.+|+|||||+|+|++.....+.+.+
T Consensus 128 ~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~---~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~ 204 (429)
T TIGR03594 128 EFYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEE---EEEEDGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA 204 (429)
T ss_pred HHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCccccc---ccccCCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC
Confidence 4556676 789999999999999999998877543211 111123458999999999999999999999888889999
Q ss_pred CceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 404 GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 404 gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
|||++.....+.. ++..+.+|||||+....... ...+.+...++...++.+|++++|+|+..+++.++..++..
T Consensus 205 gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~ 278 (429)
T TIGR03594 205 GTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVT---EGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGL 278 (429)
T ss_pred CceECcEeEEEEE-CCcEEEEEECCCccccccch---hhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHH
Confidence 9999987766653 67789999999998754322 23456666777888999999999999999999999887754
No 4
>PRK00093 GTP-binding protein Der; Reviewed
Probab=100.00 E-value=1.5e-35 Score=306.28 Aligned_cols=277 Identities=56% Similarity=0.830 Sum_probs=222.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+++|++|||||||+|+|++.....+...+++|.+.......+.+..+.+|||||+..... .
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~---~------------- 65 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD---G------------- 65 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch---h-------------
Confidence 689999999999999999999988777888999999999988999999999999999975211 0
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
+...+..++..++..+|++++|+|+..+.+..+..+..++... ++|+++|+||+|+.... ...
T Consensus 66 --------------~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~~-~~~ 128 (435)
T PRK00093 66 --------------FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDEE-ADA 128 (435)
T ss_pred --------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccch-hhH
Confidence 1122335566778899999999999988888888888888876 89999999999976522 222
Q ss_pred HHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCC
Q 011492 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI 402 (484)
Q Consensus 324 ~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~ 402 (484)
..+...++ .++++||++|.|+.++++.+......... ........+|+++|.+|+|||||+|+|++...+.+++.
T Consensus 129 ~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~----~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~ 204 (435)
T PRK00093 129 YEFYSLGLGEPYPISAEHGRGIGDLLDAILEELPEEEE----EDEEDEPIKIAIIGRPNVGKSSLINALLGEERVIVSDI 204 (435)
T ss_pred HHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCCcccc----ccccccceEEEEECCCCCCHHHHHHHHhCCCceeecCC
Confidence 34455666 48999999999999999998774322111 11122457999999999999999999999998999999
Q ss_pred CCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 403 SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 403 ~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+|+|++.....+. +++..+.++||||++...... ...+.+...++.+.++.+|++++|+|+..+++.++..++..
T Consensus 205 ~gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~ 279 (435)
T PRK00093 205 AGTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVT---EGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGL 279 (435)
T ss_pred CCceEEEEEEEEE-ECCeeEEEEECCCCCCCcchh---hHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 9999998776665 467889999999998765432 23555566777888999999999999999999999987754
No 5
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=100.00 E-value=7.8e-34 Score=307.68 Aligned_cols=282 Identities=43% Similarity=0.635 Sum_probs=218.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+|+|++|||||||+|+|++.....+.+.+|+|.+.......+.+..+.+|||||+..... .
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~---~----------- 339 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVE---G----------- 339 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCc---c-----------
Confidence 46889999999999999999999987778889999999999888888899999999999863211 0
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
+...+.+++..++..+|++|+|+|++.+....+..+..++... ++|+++|+||+|+.....
T Consensus 340 ----------------~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~--~~pvIlV~NK~D~~~~~~- 400 (712)
T PRK09518 340 ----------------IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA--GKPVVLAVNKIDDQASEY- 400 (712)
T ss_pred ----------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEECcccccchh-
Confidence 1122335666778899999999999888888777788888765 899999999999865322
Q ss_pred hhHHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeec
Q 011492 322 QVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVS 400 (484)
Q Consensus 322 ~~~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~ 400 (484)
....++..++ .++++||++|.|+.+|++.+.+.+....... .........+|+++|.+|+|||||+|+|++.....+.
T Consensus 401 ~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~-~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~ 479 (712)
T PRK09518 401 DAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKVAEKTS-GFLTPSGLRRVALVGRPNVGKSSLLNQLTHEERAVVN 479 (712)
T ss_pred hHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhcccccccc-cccCCCCCcEEEEECCCCCCHHHHHHHHhCccccccC
Confidence 1233344444 4689999999999999999988775421110 0001123469999999999999999999999877788
Q ss_pred CCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 401 PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 401 ~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
..+|||++.....+. ++|.++.+|||||++...... ...+.+...+...+++.+|++++|+|+..+++.++..+++
T Consensus 480 ~~~gtT~d~~~~~~~-~~~~~~~liDTaG~~~~~~~~---~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~ 555 (712)
T PRK09518 480 DLAGTTRDPVDEIVE-IDGEDWLFIDTAGIKRRQHKL---TGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMS 555 (712)
T ss_pred CCCCCCcCcceeEEE-ECCCEEEEEECCCcccCcccc---hhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHH
Confidence 999999998876665 478889999999997543211 1123334445567789999999999999999999988765
Q ss_pred h
Q 011492 481 R 481 (484)
Q Consensus 481 ~ 481 (484)
.
T Consensus 556 ~ 556 (712)
T PRK09518 556 M 556 (712)
T ss_pred H
Confidence 4
No 6
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.90 E-value=6.7e-23 Score=181.78 Aligned_cols=153 Identities=25% Similarity=0.390 Sum_probs=117.9
Q ss_pred HHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-hhHHHHhcCCC--ceeeecccCC
Q 011492 266 ATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFWSLGFS--PLPISAISGT 342 (484)
Q Consensus 266 ~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~--~i~vSa~~g~ 342 (484)
++..+..+|++++|+|++.|....+..+.+++.....++|+++|+||+|+.++... .....+...++ ++++||+++.
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccc
Confidence 34678899999999999988777777788877754335899999999999765422 22233333332 4789999999
Q ss_pred CCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcE
Q 011492 343 GTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF 422 (484)
Q Consensus 343 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i 422 (484)
|+++|++.+.++..... .....+++++|.||+|||||+|+|+|...+.+++.+|+|++...... ++++
T Consensus 82 ~~~~L~~~l~~~~~~~~--------~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~ 149 (157)
T cd01858 82 GKGSLIQLLRQFSKLHS--------DKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITL----MKRI 149 (157)
T ss_pred cHHHHHHHHHHHHhhhc--------cccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEc----CCCE
Confidence 99999999987653210 11235789999999999999999999999999999999998654332 3568
Q ss_pred EEEEcCCC
Q 011492 423 RLIDTAGI 430 (484)
Q Consensus 423 ~liDTPG~ 430 (484)
+++||||+
T Consensus 150 ~liDtPGi 157 (157)
T cd01858 150 YLIDCPGV 157 (157)
T ss_pred EEEECcCC
Confidence 99999996
No 7
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=9e-22 Score=183.88 Aligned_cols=165 Identities=33% Similarity=0.509 Sum_probs=139.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.-.|+++|+||||||||+|+|.|.+.+++++.+.+|+....+....+..++.++||||+.....
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~---------------- 69 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKH---------------- 69 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcch----------------
Confidence 5689999999999999999999999999999999999999999999999999999999975322
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh--
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-- 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-- 320 (484)
.+...+.+.+...+..+|+++||+|+.++....+..+++.++.. +.|+++++||+|......
T Consensus 70 --------------~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~--~~pvil~iNKID~~~~~~~l 133 (298)
T COG1159 70 --------------ALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKT--KTPVILVVNKIDKVKPKTVL 133 (298)
T ss_pred --------------HHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhc--CCCeEEEEEccccCCcHHHH
Confidence 12234567888999999999999999998888888888888773 789999999999887554
Q ss_pred hhhHHHHhcC--C-CceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 321 MQVSEFWSLG--F-SPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 321 ~~~~~~~~~~--~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
.....+.... + .++++||++|.|++.|.+.+..++++..
T Consensus 134 ~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 134 LKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred HHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCCCC
Confidence 3333333322 2 6899999999999999999999987654
No 8
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.87 E-value=7.9e-22 Score=171.60 Aligned_cols=151 Identities=31% Similarity=0.443 Sum_probs=112.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.+|+++|.||||||||+|+|+|.+ ..++++||+|.+...+.+.+.+..+.++|+||+++.......
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~e------------- 66 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEE------------- 66 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHH-------------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcH-------------
Confidence 479999999999999999999998 778999999999999999999999999999999775443211
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
++.+..++ ...|++++|+|++. ...+..+...+.+. ++|+++|+||+|+..+...
T Consensus 67 -------------------e~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~ 123 (156)
T PF02421_consen 67 -------------------ERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGI 123 (156)
T ss_dssp -------------------HHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTE
T ss_pred -------------------HHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCC
Confidence 02222333 57999999999875 23444455556665 8999999999998765432
Q ss_pred hh---HHHHhcCCCceeeecccCCCCchhhHHH
Q 011492 322 QV---SEFWSLGFSPLPISAISGTGTGELLDLV 351 (484)
Q Consensus 322 ~~---~~~~~~~~~~i~vSa~~g~gi~~L~~~i 351 (484)
.. .-....++|++++||+++.|+++|++.|
T Consensus 124 ~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 124 EIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred EECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 21 1123458899999999999999998865
No 9
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=3.1e-21 Score=190.55 Aligned_cols=163 Identities=33% Similarity=0.441 Sum_probs=134.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+|+|+||||||||+|+|++++.+++++.+|||++.....+.++|.++.++||+|+.... ...+....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~----d~VE~iGI---- 287 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD----DVVERIGI---- 287 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc----cHHHHHHH----
Confidence 3689999999999999999999999999999999999999999999999999999999997422 23333222
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
++++..+..+|++++|+|++.+....+..++..+ . .++|+++|.||+|+......
T Consensus 288 ----------------------eRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~-~--~~~~~i~v~NK~DL~~~~~~ 342 (454)
T COG0486 288 ----------------------ERAKKAIEEADLVLFVLDASQPLDKEDLALIELL-P--KKKPIIVVLNKADLVSKIEL 342 (454)
T ss_pred ----------------------HHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc-c--cCCCEEEEEechhccccccc
Confidence 6788899999999999999988777777766622 2 37999999999999876543
Q ss_pred hhHHHHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 322 ~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... ....+.+++.+|+++|.|++.|.+.|.+.+...
T Consensus 343 ~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 343 ESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred chh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 322 233455789999999999999999998877543
No 10
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.8e-22 Score=198.36 Aligned_cols=288 Identities=35% Similarity=0.376 Sum_probs=181.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh-hcc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT-TIG 242 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~-~~~ 242 (484)
..+.+.|++++||++|.|. .....+.+.++.+.+...+...++...++..|+.++.-..... ....+..++ .-+
T Consensus 76 ~s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~hgs~a--vv~~~l~a~~~sg 150 (531)
T KOG1191|consen 76 RSVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQTHGSSA--VVVGVLTALGASG 150 (531)
T ss_pred cccccCCCCccccccccCh---hhcccccCCCCcchhhhhhccccCCceeeeeeeEEEEEecCcc--chhhHHHHhhhcc
Confidence 4566889999999999998 2234566678889998888888888999999999986533332 222222222 244
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH---------HHHHHHHhhcCCCeEEEEeccc
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE---------EIADWLRKNYMDKFIILAVNKC 313 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~---------~~~~~l~~~~~~~p~ilV~NK~ 313 (484)
.+|++.........++.......+.+.....|++....+........+. .+...+.+.....-.. +
T Consensus 151 ~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~~~~l~~~~r~~lIe~~a~l~a~-----i 225 (531)
T KOG1191|consen 151 IPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGEALALCFGWRKILIEALAGLEAR-----I 225 (531)
T ss_pred CCCccccCchhhhhhhhhccccchhhhcChhhhhhhhhHhhhhhhhhhhcchhHHhhhhHHHHHHHHHhcccee-----e
Confidence 6666555544444444433333333333444555554443221111100 0111111110010000 1
Q ss_pred CCCchhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhc
Q 011492 314 ESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVG 393 (484)
Q Consensus 314 Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg 393 (484)
|..... .++......++. +...|++.+...+... +.....+.+..|+|+|+||||||||+|+|..
T Consensus 226 df~e~~-----~l~~~~t~~~~~------~~~~l~d~v~s~l~~~----~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~ 290 (531)
T KOG1191|consen 226 DFEEER-----PLEEIETVEIFI------ESLSLLDDVLSHLNKA----DEIERLQSGLQIAIVGRPNVGKSSLLNALSR 290 (531)
T ss_pred chhhcC-----chhhccchhhhh------HHHHHHHHHHHHHHhh----hhHHHhhcCCeEEEEcCCCCCHHHHHHHHhc
Confidence 111110 011111111111 1122444444433322 2233445678999999999999999999999
Q ss_pred CcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccH
Q 011492 394 EDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 394 ~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
+++..|+++||||||.+...+. .+|.++.|+||.||++. .+..++.+.++++.+.++.+|++++|+|+....|.
T Consensus 291 ~drsIVSpv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~-----~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~ 364 (531)
T KOG1191|consen 291 EDRSIVSPVPGTTRDAIEAQVT-VNGVPVRLSDTAGIREE-----SNDGIEALGIERARKRIERADVILLVVDAEESDTE 364 (531)
T ss_pred CCceEeCCCCCcchhhheeEee-cCCeEEEEEeccccccc-----cCChhHHHhHHHHHHHHhhcCEEEEEecccccccc
Confidence 9999999999999999999998 69999999999999982 23678888999999999999999999999999999
Q ss_pred Hhhhhhhhc
Q 011492 474 QADWRDHRW 482 (484)
Q Consensus 474 ~d~~~~~~~ 482 (484)
+|..+.+.+
T Consensus 365 sd~~i~~~l 373 (531)
T KOG1191|consen 365 SDLKIARIL 373 (531)
T ss_pred cchHHHHHH
Confidence 998876544
No 11
>PRK12289 GTPase RsgA; Reviewed
Probab=99.86 E-value=2.7e-21 Score=191.07 Aligned_cols=170 Identities=24% Similarity=0.294 Sum_probs=119.4
Q ss_pred HHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-hcCCCeEEEEecccCCCchhhhh-hH-HHHhcCCCceeeecccCCCC
Q 011492 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIMQ-VS-EFWSLGFSPLPISAISGTGT 344 (484)
Q Consensus 268 ~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~-~~-~~~~~~~~~i~vSa~~g~gi 344 (484)
..+.++|.+++|+|+..+.... ..+.+++.. ...+.|+++|+||+|+....... .. .+...++.++++||+++.|+
T Consensus 85 ~~~aNvD~vLlV~d~~~p~~~~-~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 85 PPVANADQILLVFALAEPPLDP-WQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred hhhhcCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 4578999999999987653221 122333332 12489999999999998643222 22 23456788999999999999
Q ss_pred chhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceeeecC
Q 011492 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTGP 417 (484)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~~~~ 417 (484)
++|++.+.. ..++++|++|||||||+|+|++...+.++.++| |||+.....+ .
T Consensus 164 ~eL~~~L~~------------------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l--~ 223 (352)
T PRK12289 164 EALLEQLRN------------------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFEL--P 223 (352)
T ss_pred HHHhhhhcc------------------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEEC--C
Confidence 998888743 247999999999999999999999999999998 8888755443 3
Q ss_pred CCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH---HHhhcCcE
Q 011492 418 EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF---RAIRRSDV 460 (484)
Q Consensus 418 ~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~ 460 (484)
+|. .|+||||++.+.+..........+...+.+ ..|++.||
T Consensus 224 ~g~--~liDTPG~~~~~l~~~~~~l~~~F~e~~~~~~~~~CrF~dC 267 (352)
T PRK12289 224 NGG--LLADTPGFNQPDLDCSPRELAHYFPEARQRLAQGNCQFNDC 267 (352)
T ss_pred CCc--EEEeCCCccccccccCHHHHHhhHHHHHHhHhhCceEccCC
Confidence 333 899999999988742222333334322222 35666555
No 12
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.86 E-value=8.6e-21 Score=183.54 Aligned_cols=163 Identities=24% Similarity=0.330 Sum_probs=124.5
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHHHH-hcCCCceeeecccC
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~-~~~~~~i~vSa~~g 341 (484)
+++...+..+|++++|+|++.|.+..+..+.+.+ .++|+++|+||+|+.+..... ...++ ..+.+++.+||+++
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~ 88 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKKG 88 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 5677888999999999999988888777666655 268999999999997543222 22222 23557899999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011492 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.|+.+|++.+.+.++................+++++|.||+|||||+|+|.+.....++..||+|+..+...+ +..
T Consensus 89 ~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 164 (276)
T TIGR03596 89 KGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL----SDG 164 (276)
T ss_pred ccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe----CCC
Confidence 9999999998887754321111111112346899999999999999999999999999999999998765443 346
Q ss_pred EEEEEcCCCccCc
Q 011492 422 FRLIDTAGIRKRA 434 (484)
Q Consensus 422 i~liDTPG~~~~~ 434 (484)
+.|+||||+..+.
T Consensus 165 ~~l~DtPG~~~~~ 177 (276)
T TIGR03596 165 LELLDTPGILWPK 177 (276)
T ss_pred EEEEECCCcccCC
Confidence 8999999997664
No 13
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.85 E-value=5.9e-21 Score=168.88 Aligned_cols=151 Identities=25% Similarity=0.356 Sum_probs=110.8
Q ss_pred CeEEEEeeCCCCCCcccHHHH-HHHHhhcCCCeEEEEecccCCCchhhhhh-H-HHHhc-CCCceeeecccCCCCchhhH
Q 011492 274 CVIIFLVDGQAGLTAADEEIA-DWLRKNYMDKFIILAVNKCESPRKGIMQV-S-EFWSL-GFSPLPISAISGTGTGELLD 349 (484)
Q Consensus 274 d~vilVvD~~~~~~~~~~~~~-~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-~-~~~~~-~~~~i~vSa~~g~gi~~L~~ 349 (484)
|++++|+|++.|....+..+. ..+.. .++|+++|+||+|+........ . .+... ...++++||+++.|+++|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 789999999888777766655 34443 3799999999999976543222 2 22222 34678999999999999999
Q ss_pred HHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCC
Q 011492 350 LVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (484)
Q Consensus 350 ~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG 429 (484)
.+.+...................+++++|.+|+||||++|+|++...+.++..+|+|++.....+ +..+.|+||||
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtPG 154 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL----DNKIKLLDTPG 154 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe----cCCEEEEECCC
Confidence 88765432110000001123457899999999999999999999988889999999999876543 35689999999
Q ss_pred C
Q 011492 430 I 430 (484)
Q Consensus 430 ~ 430 (484)
+
T Consensus 155 ~ 155 (155)
T cd01849 155 I 155 (155)
T ss_pred C
Confidence 6
No 14
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.85 E-value=1.2e-20 Score=183.46 Aligned_cols=163 Identities=25% Similarity=0.353 Sum_probs=124.2
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-hhHHHH-hcCCCceeeecccC
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~-~~~~~~i~vSa~~g 341 (484)
+++...+..+|++++|+|++.+....+..+...+. ++|+++|+||+|+.+.... ....+. ..+.+++.+||+++
T Consensus 16 ~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~ 91 (287)
T PRK09563 16 REIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKG 91 (287)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCc
Confidence 56778889999999999999888877766655442 7899999999999754322 222222 33567899999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011492 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.|+.+|++.+...++................+++++|.+|||||||+|+|.++..+.+++.||+|++.+.... +.+
T Consensus 92 ~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 167 (287)
T PRK09563 92 QGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL----GKG 167 (287)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe----CCc
Confidence 9999999988887654321111111122346899999999999999999999999999999999999754333 457
Q ss_pred EEEEEcCCCccCc
Q 011492 422 FRLIDTAGIRKRA 434 (484)
Q Consensus 422 i~liDTPG~~~~~ 434 (484)
+.|+||||+..+.
T Consensus 168 ~~l~DtPGi~~~~ 180 (287)
T PRK09563 168 LELLDTPGILWPK 180 (287)
T ss_pred EEEEECCCcCCCC
Confidence 9999999998765
No 15
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.85 E-value=1.9e-20 Score=162.89 Aligned_cols=136 Identities=29% Similarity=0.373 Sum_probs=109.6
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHH-HHhcCCCceeeecccC
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSE-FWSLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~-~~~~~~~~i~vSa~~g 341 (484)
+.+...+..+|++++|+|++.+....+..+.+++.....++|+++|+||+|+..+.... ... +...++.++++||.++
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 56778899999999999999988888878888877643578999999999997644322 222 3344567899999987
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011492 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.+ +++++|.+|+|||||+|+|++.....++..+|+|++.....+ ...
T Consensus 83 ~~-----------------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~----~~~ 129 (141)
T cd01857 83 NA-----------------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL----TPT 129 (141)
T ss_pred Cc-----------------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe----CCC
Confidence 65 589999999999999999999998889999999998765444 236
Q ss_pred EEEEEcCCCcc
Q 011492 422 FRLIDTAGIRK 432 (484)
Q Consensus 422 i~liDTPG~~~ 432 (484)
+.++||||+.-
T Consensus 130 ~~i~DtpG~~~ 140 (141)
T cd01857 130 ITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCcCC
Confidence 89999999853
No 16
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.85 E-value=5.7e-21 Score=181.00 Aligned_cols=146 Identities=21% Similarity=0.250 Sum_probs=108.2
Q ss_pred HHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-hcCCCeEEEEecccCCCchhhh--h-hHHHHhcCCCceeeecccCCC
Q 011492 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM--Q-VSEFWSLGFSPLPISAISGTG 343 (484)
Q Consensus 268 ~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~--~-~~~~~~~~~~~i~vSa~~g~g 343 (484)
..+.++|.+++|+|+..|...... +.+|+.. ...+.|+++|+||+|+...... + ...+...+++++.+||++|.|
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDG 110 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchh
Confidence 457899999999998876533221 2223221 1147999999999999753221 1 123445678899999999999
Q ss_pred CchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceeeec
Q 011492 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (484)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~~~ 416 (484)
++++++.+.. ..++++|.+|||||||+|.|++.....++.+++ |||+.....+
T Consensus 111 i~eLf~~l~~------------------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-- 170 (245)
T TIGR00157 111 LKELIEALQN------------------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-- 170 (245)
T ss_pred HHHHHhhhcC------------------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--
Confidence 9999887643 368999999999999999999998888777653 7887765444
Q ss_pred CCCCcEEEEEcCCCccCcccc
Q 011492 417 PEGQKFRLIDTAGIRKRAAIA 437 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~~ 437 (484)
.+ ..|+||||++.+.++.
T Consensus 171 -~~--~~liDtPG~~~~~l~~ 188 (245)
T TIGR00157 171 -HG--GLIADTPGFNEFGLWH 188 (245)
T ss_pred -CC--cEEEeCCCccccCCCC
Confidence 22 3899999999988764
No 17
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.84 E-value=2.5e-20 Score=183.65 Aligned_cols=184 Identities=29% Similarity=0.444 Sum_probs=146.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
...+|+++|+||+|||||+|+|+|.+..++++.+|+|++.....+.++++++.++||+|+......... .+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~-~E~~S----- 250 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES-VEKYS----- 250 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccc-eEEEe-----
Confidence 478999999999999999999999999999999999999999999999999999999999754433221 01110
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
...+..++..+|++++|+|++++++.+|..+..++.+. ++++++|+||+|+......
T Consensus 251 ---------------------v~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~--g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 251 ---------------------VARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEA--GRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred ---------------------ehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc--CCCeEEEEEccccCCchhh
Confidence 14566788999999999999999999999999999887 9999999999999775211
Q ss_pred hhHH--------HHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhh
Q 011492 322 QVSE--------FWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALV 392 (484)
Q Consensus 322 ~~~~--------~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Ll 392 (484)
.... +...++ +++++||++|.|+.++++.+........ .+| .|+++|..+
T Consensus 308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~------------~ri---------~Ts~LN~~l 366 (444)
T COG1160 308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECAT------------RRI---------STSLLNRVL 366 (444)
T ss_pred HHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHhc------------ccc---------CHHHHHHHH
Confidence 1111 111222 7899999999999999999987654332 233 588899888
Q ss_pred cCc
Q 011492 393 GED 395 (484)
Q Consensus 393 g~~ 395 (484)
...
T Consensus 367 ~~a 369 (444)
T COG1160 367 EDA 369 (444)
T ss_pred HHH
Confidence 753
No 18
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.84 E-value=5.5e-20 Score=182.88 Aligned_cols=161 Identities=24% Similarity=0.267 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...++|+++|++|+|||||+|+|++.. ..+.+.+++|.+.....+.+ ++.++.+|||||+... ......+.
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~----- 258 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAA----- 258 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHH-----
Confidence 446899999999999999999999986 56778889999998888888 5789999999998542 11111111
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh-cCCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
+ +.+...+..+|++++|+|++.+....... +..++... ..++|+++|+||+|+..
T Consensus 259 ----------------------f-~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 259 ----------------------F-RATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred ----------------------H-HHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 1 23445688999999999998765443322 23344432 13689999999999975
Q ss_pred hhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 318 KGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
..... .......+++++||++|.|+++|++.|.+.
T Consensus 316 ~~~v~--~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 316 EPRIE--RLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred hHhHH--HHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 43211 111222467999999999999999988653
No 19
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.83 E-value=7e-20 Score=164.74 Aligned_cols=160 Identities=26% Similarity=0.293 Sum_probs=118.7
Q ss_pred HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-hhHHHH-hcCCCceeeeccc
Q 011492 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVSEFW-SLGFSPLPISAIS 340 (484)
Q Consensus 263 ~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~~~~-~~~~~~i~vSa~~ 340 (484)
.+++...+.++|++++|+|++.+....+..+...+ .++|+++|+||+|+...... ....++ ..+..++.+||++
T Consensus 10 ~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~ 85 (171)
T cd01856 10 LRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS 85 (171)
T ss_pred HHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence 35677889999999999999887766555544332 36899999999999754322 222232 2345678999999
Q ss_pred CCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC
Q 011492 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~ 420 (484)
+.|+++|.+.+.+++....... .........+++++|.+|+|||||+|.|.+.....++..+|+|++.....+. .
T Consensus 86 ~~gi~~L~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~ 160 (171)
T cd01856 86 GKGVKKLLKAAKKLLKDIEKLK-AKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----P 160 (171)
T ss_pred cccHHHHHHHHHHHHHHHhhhh-hcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----C
Confidence 9999999999988764321100 1111223458999999999999999999998888899999999987765542 5
Q ss_pred cEEEEEcCCCc
Q 011492 421 KFRLIDTAGIR 431 (484)
Q Consensus 421 ~i~liDTPG~~ 431 (484)
.+.|+||||+.
T Consensus 161 ~~~~iDtpG~~ 171 (171)
T cd01856 161 GIYLLDTPGIL 171 (171)
T ss_pred CEEEEECCCCC
Confidence 68999999984
No 20
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.83 E-value=8.5e-20 Score=161.75 Aligned_cols=151 Identities=27% Similarity=0.344 Sum_probs=114.1
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH-HH-HhcCCCceeeecccC
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-EF-WSLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-~~-~~~~~~~i~vSa~~g 341 (484)
+.....+..+|++++|+|++.+....+..+..++... ++|+++|+||+|+.+......+ .+ ...+.+++++||+++
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~--~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 81 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLEL--GKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER 81 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhC--CCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence 3444555679999999999887766666666655443 7899999999999754322221 12 223567899999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011492 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.|+++|++.+.+.++.. ....+++++|.+|+||||++|.|.+.....+++.+|+|++...... +..
T Consensus 82 ~gi~~L~~~l~~~~~~~----------~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~ 147 (156)
T cd01859 82 LGTKILRRTIKELAKID----------GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKI----TSK 147 (156)
T ss_pred ccHHHHHHHHHHHHhhc----------CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEc----CCC
Confidence 99999999998876521 2345789999999999999999999888888999999877532222 346
Q ss_pred EEEEEcCCC
Q 011492 422 FRLIDTAGI 430 (484)
Q Consensus 422 i~liDTPG~ 430 (484)
+.|+||||+
T Consensus 148 ~~~~DtpGi 156 (156)
T cd01859 148 IYLLDTPGV 156 (156)
T ss_pred EEEEECcCC
Confidence 899999996
No 21
>PRK12288 GTPase RsgA; Reviewed
Probab=99.83 E-value=2.4e-20 Score=184.42 Aligned_cols=167 Identities=23% Similarity=0.293 Sum_probs=114.6
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHh-hcCCCeEEEEecccCCCchhh----hhh-HHHHhcCCCceeeecccCCC
Q 011492 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI----MQV-SEFWSLGFSPLPISAISGTG 343 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~----~~~-~~~~~~~~~~i~vSa~~g~g 343 (484)
+.|+|.+++|++....++... +.+|+.. ...+.|+++|+||+|+.+... ... ..+...+++++++||+++.|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~--Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNI--IDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHH--HHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 578999999998654333322 2222221 124789999999999976431 111 12335678999999999999
Q ss_pred CchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceeeec
Q 011492 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (484)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~~~ 416 (484)
+++|++.+... .++++|.+|||||||+|+|+|...+.|+.+++ ||+......+
T Consensus 196 ideL~~~L~~k------------------i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l-- 255 (347)
T PRK12288 196 LEELEAALTGR------------------ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHF-- 255 (347)
T ss_pred HHHHHHHHhhC------------------CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEe--
Confidence 99999887532 47999999999999999999999999998875 6766554443
Q ss_pred CCCCcEEEEEcCCCccCccccCC-CCchhHH-HHHHHHHHhhcCcE
Q 011492 417 PEGQKFRLIDTAGIRKRAAIASS-GSTTEAL-SVNRAFRAIRRSDV 460 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~d~ 460 (484)
..| ..||||||++..+++... ......+ .+......|++.||
T Consensus 256 ~~~--~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF~dC 299 (347)
T PRK12288 256 PHG--GDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKFRDC 299 (347)
T ss_pred cCC--CEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCCCCC
Confidence 223 379999999999886422 1122222 23444455666665
No 22
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.83 E-value=1.4e-19 Score=174.93 Aligned_cols=161 Identities=29% Similarity=0.411 Sum_probs=121.0
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|++|||||||+|+|+|.+...+++.+++|+....+....++.++.++||||+......
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~----------------- 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS----------------- 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch-----------------
Confidence 699999999999999999999987788999999998877766667778999999998643110
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-hhh
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQV 323 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~ 323 (484)
+...+.+.+...+..+|++++|+|++.+.... ..+...+... +.|+++|+||+|+..... ...
T Consensus 65 -------------l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~--~~p~ilV~NK~Dl~~~~~~~~~ 128 (270)
T TIGR00436 65 -------------LNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNL--KRPVVLTRNKLDNKFKDKLLPL 128 (270)
T ss_pred -------------HHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhc--CCCEEEEEECeeCCCHHHHHHH
Confidence 11123345667788999999999988754433 4455555553 789999999999975322 111
Q ss_pred H-HHHh-cCC-CceeeecccCCCCchhhHHHHHHhhhc
Q 011492 324 S-EFWS-LGF-SPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 324 ~-~~~~-~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
. .+.. .++ +++++||++|.|+++|++.+.+.++..
T Consensus 129 ~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 129 IDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEG 166 (270)
T ss_pred HHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCC
Confidence 1 1211 233 689999999999999999999887653
No 23
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.82 E-value=5.8e-20 Score=168.30 Aligned_cols=147 Identities=29% Similarity=0.324 Sum_probs=108.6
Q ss_pred HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh--hHHH------HhcCC---
Q 011492 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSEF------WSLGF--- 331 (484)
Q Consensus 263 ~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~--~~~~------~~~~~--- 331 (484)
...+..++..+|++++|+|++.+.......+ .....++|+++|+||+|+....... ...+ ...++
T Consensus 25 ~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l----~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (190)
T cd01855 25 LNLLSSISPKKALVVHVVDIFDFPGSLIPRL----RLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPK 100 (190)
T ss_pred HHHHHhcccCCcEEEEEEECccCCCccchhH----HHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcc
Confidence 4556677888999999999987654444333 1112478999999999987532211 1111 11222
Q ss_pred CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcc--------eeecCCC
Q 011492 332 SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR--------TIVSPIS 403 (484)
Q Consensus 332 ~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~--------~~~~~~~ 403 (484)
+++++||+++.|+++|++.+.+.++ ...+++++|.+|+|||||+|+|++... ..++..|
T Consensus 101 ~i~~vSA~~~~gi~eL~~~l~~~l~-------------~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~ 167 (190)
T cd01855 101 DVILISAKKGWGVEELINAIKKLAK-------------KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIP 167 (190)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh-------------cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCC
Confidence 5789999999999999999988764 235799999999999999999998643 4567889
Q ss_pred CceecccceeeecCCCCcEEEEEcCCC
Q 011492 404 GTTRDAIDTEFTGPEGQKFRLIDTAGI 430 (484)
Q Consensus 404 gtt~~~~~~~~~~~~g~~i~liDTPG~ 430 (484)
|||++.+...+. ..+.||||||+
T Consensus 168 gtT~~~~~~~~~----~~~~~~DtPG~ 190 (190)
T cd01855 168 GTTLDLIKIPLG----NGKKLYDTPGI 190 (190)
T ss_pred CeeeeeEEEecC----CCCEEEeCcCC
Confidence 999998765543 25799999996
No 24
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=2.4e-20 Score=189.47 Aligned_cols=210 Identities=24% Similarity=0.253 Sum_probs=150.9
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEE------------------eCCceeeEeeccc
Q 011492 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF------------------WGEHEFMLVDTGG 220 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~------------------~~~~~i~liDtpG 220 (484)
.+.+.|.|||+|+..+|||.|+..|.+.+ .+.+...|.|+......+. +.-..+.+|||||
T Consensus 471 ~~lRSPIcCilGHVDTGKTKlld~ir~tN-VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg 549 (1064)
T KOG1144|consen 471 ENLRSPICCILGHVDTGKTKLLDKIRGTN-VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG 549 (1064)
T ss_pred hhcCCceEEEeecccccchHHHHHhhccc-cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence 34568999999999999999999999876 4566666666654332222 1223479999999
Q ss_pred cccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh
Q 011492 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~ 300 (484)
+..+.+... +....||++|+|+|+.+++..+..+.+++|+..
T Consensus 550 hEsFtnlRs--------------------------------------rgsslC~~aIlvvdImhGlepqtiESi~lLR~r 591 (1064)
T KOG1144|consen 550 HESFTNLRS--------------------------------------RGSSLCDLAILVVDIMHGLEPQTIESINLLRMR 591 (1064)
T ss_pred chhhhhhhh--------------------------------------ccccccceEEEEeehhccCCcchhHHHHHHHhc
Confidence 988765432 345779999999999999999999999999886
Q ss_pred cCCCeEEEEecccCCCc-------hhhhh--------------------hHHHHhc---------------CCCceeeec
Q 011492 301 YMDKFIILAVNKCESPR-------KGIMQ--------------------VSEFWSL---------------GFSPLPISA 338 (484)
Q Consensus 301 ~~~~p~ilV~NK~Dl~~-------~~~~~--------------------~~~~~~~---------------~~~~i~vSa 338 (484)
+.|+||.+||+|.+- ..+.. ...|... .++++|+||
T Consensus 592 --ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA 669 (1064)
T KOG1144|consen 592 --KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSA 669 (1064)
T ss_pred --CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeeccc
Confidence 899999999999531 00000 0111111 126789999
Q ss_pred ccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC
Q 011492 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE 418 (484)
Q Consensus 339 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~ 418 (484)
.+|.|+.+|+.+|.++.+..... +++++ ..+-.+++. +++.+..|||.+++.+++.+++
T Consensus 670 ~sGeGipdLl~llv~ltQk~m~~-----------kl~y~-------~ev~cTVlE---VKvieG~GtTIDViLvNG~L~e 728 (1064)
T KOG1144|consen 670 ISGEGIPDLLLLLVQLTQKTMVE-----------KLAYV-------DEVQCTVLE---VKVIEGHGTTIDVILVNGELHE 728 (1064)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHH-----------HHhhh-------hheeeEEEE---EEeecCCCceEEEEEEcceecc
Confidence 99999999999999887654321 11111 222222222 3445666999999999999999
Q ss_pred CCcEEEEEcCCC
Q 011492 419 GQKFRLIDTAGI 430 (484)
Q Consensus 419 g~~i~liDTPG~ 430 (484)
|++|+|+...|-
T Consensus 729 GD~IvvcG~~Gp 740 (1064)
T KOG1144|consen 729 GDQIVVCGLQGP 740 (1064)
T ss_pred CCEEEEcCCCCc
Confidence 999999999883
No 25
>COG2262 HflX GTPases [General function prediction only]
Probab=99.82 E-value=1.2e-19 Score=176.21 Aligned_cols=198 Identities=25% Similarity=0.280 Sum_probs=148.8
Q ss_pred HHHhHhhhccccchhhhhhhhhccccccccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEE
Q 011492 127 LLSRQLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRS 206 (484)
Q Consensus 127 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~ 206 (484)
...+|+.+.++..+++...+..+.+...+..+.....+.|+++|++|+|||||+|+|++.. ....+..+.|.++....+
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~-~~~~d~LFATLdpttR~~ 234 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGAD-VYVADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCeEEEEeeccccHHHHHHHHhccC-eeccccccccccCceeEE
Confidence 3445666666777777777777777777778888889999999999999999999999875 456777888999988888
Q ss_pred EeC-CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC
Q 011492 207 FWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (484)
Q Consensus 207 ~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~ 285 (484)
.+. |..+.+.||.|+.+ ..++.+.+.+ +.++.....+|++++|+|+++|
T Consensus 235 ~l~~g~~vlLtDTVGFI~--~LP~~LV~AF----------------------------ksTLEE~~~aDlllhVVDaSdp 284 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIR--DLPHPLVEAF----------------------------KSTLEEVKEADLLLHVVDASDP 284 (411)
T ss_pred EeCCCceEEEecCccCcc--cCChHHHHHH----------------------------HHHHHHhhcCCEEEEEeecCCh
Confidence 887 58899999999986 4444444333 4566778889999999999988
Q ss_pred CCcccHHH-HHHHHhh-cCCCeEEEEecccCCCchhhhhhHHHHhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011492 286 LTAADEEI-ADWLRKN-YMDKFIILAVNKCESPRKGIMQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 286 ~~~~~~~~-~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
........ .+.|.+. ....|+++|+||+|+..... ......... ..+++||++|.|++.|++.|...+..
T Consensus 285 ~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~--~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 285 EILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE--ILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh--hhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 44443333 3344442 24689999999999876543 111111122 58999999999999999999887763
No 26
>PRK15494 era GTPase Era; Provisional
Probab=99.82 E-value=2.6e-19 Score=177.88 Aligned_cols=166 Identities=27% Similarity=0.396 Sum_probs=125.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....+|+++|++|||||||+|+|+|.....+++.+++|+....+.+.+++.++.+|||||+......
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~------------- 116 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS------------- 116 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-------------
Confidence 3467999999999999999999999887777888899988888888888899999999998542111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
+...+.+.+...+..+|++++|+|+..++...+..++..+... +.|.++|+||+|+.....
T Consensus 117 -----------------l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~~ 177 (339)
T PRK15494 117 -----------------LEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSL--NIVPIFLLNKIDIESKYL 177 (339)
T ss_pred -----------------HHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccccH
Confidence 1112234555668899999999998776666655566666554 678889999999875432
Q ss_pred hhhHHHHh-cC--CCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 321 MQVSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 321 ~~~~~~~~-~~--~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.....+.. .. ..++++||++|.|++++++++...+++.
T Consensus 178 ~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~ 218 (339)
T PRK15494 178 NDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKIS 218 (339)
T ss_pred HHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCC
Confidence 22233332 22 3689999999999999999999887643
No 27
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.81 E-value=3e-19 Score=159.68 Aligned_cols=145 Identities=23% Similarity=0.338 Sum_probs=97.7
Q ss_pred CeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHHHHhcCCCceeeecccC-----------
Q 011492 274 CVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGFSPLPISAISG----------- 341 (484)
Q Consensus 274 d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~i~vSa~~g----------- 341 (484)
|++++|+|++.+....+..+.+.+.-...++|+++|+||+|+.+..... ...++...+..+.+.+...
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 7899999999998888888877742111378999999999998654432 3334333343333222211
Q ss_pred ---------------CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCce
Q 011492 342 ---------------TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTT 406 (484)
Q Consensus 342 ---------------~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt 406 (484)
.|.+.+++.+.++.. ........+++++|.+|+|||||+|+|+|...+.++..||+|
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T 152 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSR--------NKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVT 152 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhh--------ccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeE
Confidence 112222222221111 011122358999999999999999999999999999999999
Q ss_pred ecccceeeecCCCCcEEEEEcCCC
Q 011492 407 RDAIDTEFTGPEGQKFRLIDTAGI 430 (484)
Q Consensus 407 ~~~~~~~~~~~~g~~i~liDTPG~ 430 (484)
++.+...+ +.++.|+||||+
T Consensus 153 ~~~~~~~~----~~~~~l~DtPGi 172 (172)
T cd04178 153 KSMQEVHL----DKKVKLLDSPGI 172 (172)
T ss_pred cceEEEEe----CCCEEEEECcCC
Confidence 98765443 357899999996
No 28
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.2e-18 Score=153.98 Aligned_cols=155 Identities=56% Similarity=0.895 Sum_probs=120.5
Q ss_pred EEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCC
Q 011492 167 AIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (484)
Q Consensus 167 ~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (484)
+++|.+|+|||||+|+|++.........+++|.........+.+..+.+|||||+.....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-------------------- 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-------------------- 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--------------------
Confidence 479999999999999999987666777888888888878888888999999999975322
Q ss_pred chhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHH
Q 011492 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF 326 (484)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~ 326 (484)
.+.+.+.+.....+..+|++++|+|+..+....+..+..++... +.|+++|+||+|+...... ...+
T Consensus 61 ----------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~-~~~~ 127 (157)
T cd01894 61 ----------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEEDE-AAEF 127 (157)
T ss_pred ----------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHHH-HHHH
Confidence 01112234455667889999999999887777777777777665 7999999999999875433 2233
Q ss_pred HhcCC-CceeeecccCCCCchhhHHHHHH
Q 011492 327 WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 327 ~~~~~-~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...+. +++++|++++.|++++++++.+.
T Consensus 128 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 128 YSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred HhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 34455 68999999999999999998764
No 29
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.80 E-value=4.3e-19 Score=175.30 Aligned_cols=171 Identities=25% Similarity=0.256 Sum_probs=126.3
Q ss_pred HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH--HHHhcCCCceeeecc
Q 011492 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS--EFWSLGFSPLPISAI 339 (484)
Q Consensus 262 ~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~--~~~~~~~~~i~vSa~ 339 (484)
+++++++.+..+|+||.++|+++|+......+..++.+....+..+|++||+||++......+ ++...++++++.||.
T Consensus 164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~ 243 (562)
T KOG1424|consen 164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSAL 243 (562)
T ss_pred HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 348899999999999999999999999999999999987677889999999999998776665 455567788888886
Q ss_pred cC----CC--CchhhH---HHHHHhh------------hcc----------Ccchhh--------hhccCCCEEEEEcCC
Q 011492 340 SG----TG--TGELLD---LVCSELK------------KVE----------GTEDLV--------EEENRIPAIAIVGRP 380 (484)
Q Consensus 340 ~g----~g--i~~L~~---~i~~~l~------------~~~----------~~~~~~--------~~~~~~~~i~lvG~~ 380 (484)
.. .+ +.+-.. ....... +.. ...... .......+|++||.|
T Consensus 244 ~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYP 323 (562)
T KOG1424|consen 244 AATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYP 323 (562)
T ss_pred cccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCC
Confidence 51 11 110000 0000000 000 000000 001113589999999
Q ss_pred CCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccc
Q 011492 381 NVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 381 g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~ 436 (484)
||||||+||+|.|.+++.|+.+||.|++.++..+. ..+.|||+||+..|++.
T Consensus 324 NVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLVfPSf~ 375 (562)
T KOG1424|consen 324 NVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLVFPSFS 375 (562)
T ss_pred CCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCccccCCC
Confidence 99999999999999999999999999998876664 46899999999998764
No 30
>PRK11058 GTPase HflX; Provisional
Probab=99.79 E-value=1.2e-18 Score=177.12 Aligned_cols=163 Identities=21% Similarity=0.218 Sum_probs=115.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..++|+|+|++|||||||+|+|++.+.. +.+.+++|.+.....+.+.+. .+.+|||||+... .+....+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~------ 266 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAA------ 266 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHH------
Confidence 4689999999999999999999997744 677888999888877777664 8899999998542 11111111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
+ ..+...+..+|++++|+|++++....... +..++.... .+.|+++|+||+|+...
T Consensus 267 ---------------------f-~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 267 ---------------------F-KATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDD 324 (426)
T ss_pred ---------------------H-HHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCc
Confidence 1 23456678899999999998765444332 223343321 36899999999999753
Q ss_pred hhhhhHHHHhcCCC-ceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIMQVSEFWSLGFS-PLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~~~~~~~~~~~-~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ......+++ ++.+||++|.|+++|++.+.+.+.
T Consensus 325 ~~~~-~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 325 FEPR-IDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred hhHH-HHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 2111 111223444 488999999999999999988764
No 31
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.79 E-value=2.9e-18 Score=153.62 Aligned_cols=161 Identities=26% Similarity=0.343 Sum_probs=108.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+++|++|+|||||+|+|++... .....+++|.........+.+.++.+|||||+..........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~------------ 67 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNT------------ 67 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCch------------
Confidence 5899999999999999999998763 344566777777776666677899999999985422111100
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHH-hhhcCeEEEEeeCCCCCCcc---cHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAA-IEESCVIIFLVDGQAGLTAA---DEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~-~~~~d~vilVvD~~~~~~~~---~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
+....... ...+|++++|+|+....... ...+...+.....+.|+++|+||+|+....
T Consensus 68 ------------------~~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~ 129 (168)
T cd01897 68 ------------------IEMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE 129 (168)
T ss_pred ------------------HHHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh
Confidence 00111111 22368999999987653321 123444454444478999999999997643
Q ss_pred hhh-hHHHHh-cCCCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IMQ-VSEFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~~-~~~~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... ...+.. ...+++++||++|.|++++++++.+.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 130 DLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred hHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 222 112222 356789999999999999999987653
No 32
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.78 E-value=3e-18 Score=158.86 Aligned_cols=163 Identities=25% Similarity=0.284 Sum_probs=110.9
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-eeeEeeccccccccCCCchhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
....++|+++|++|||||||+|+|++... .....++.|.......+.+.+. .+.+|||||+..... ....
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~------ 108 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLV------ 108 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHH------
Confidence 44578999999999999999999998752 3344455666666666666554 899999999854211 1100
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCC
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~ 316 (484)
..+ ......+..+|++++|+|+..+....+. .+..++... ..+.|+++|+||+|+.
T Consensus 109 ---------------------~~~-~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~ 166 (204)
T cd01878 109 ---------------------EAF-RSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLL 166 (204)
T ss_pred ---------------------HHH-HHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccC
Confidence 001 1223446789999999999876544432 233444432 1368999999999997
Q ss_pred chhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 317 RKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 317 ~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...... ..+.....+++++||+++.|+++++++|...
T Consensus 167 ~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 167 DDEELE-ERLEAGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ChHHHH-HHhhcCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 654332 1223344578999999999999999988654
No 33
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=8.2e-18 Score=149.31 Aligned_cols=173 Identities=24% Similarity=0.289 Sum_probs=125.9
Q ss_pred cccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhh
Q 011492 154 TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIM 232 (484)
Q Consensus 154 ~~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~ 232 (484)
.....+....+-|+++|++|||||||||+|++.+ .+.++.+||.|+..+...+ +..+.++|.||+.-..-..
T Consensus 15 ~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~~~~~lVDlPGYGyAkv~k---- 87 (200)
T COG0218 15 DIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---DDELRLVDLPGYGYAKVPK---- 87 (200)
T ss_pred CHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---cCcEEEEeCCCcccccCCH----
Confidence 3445566678999999999999999999999965 5889999999998887443 2238999999986422111
Q ss_pred hhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecc
Q 011492 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (484)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 312 (484)
... ++|...+.+ .+..-.+...+++++|++++....|.++++|+... +.|+++|+||
T Consensus 88 ----------------~~~----e~w~~~i~~-YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK 144 (200)
T COG0218 88 ----------------EVK----EKWKKLIEE-YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTK 144 (200)
T ss_pred ----------------HHH----HHHHHHHHH-HHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEc
Confidence 111 112222211 22222347889999999999999999999999997 9999999999
Q ss_pred cCCCchhhhh-h----HHHHhcCC--C--ceeeecccCCCCchhhHHHHHHhh
Q 011492 313 CESPRKGIMQ-V----SEFWSLGF--S--PLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 313 ~Dl~~~~~~~-~----~~~~~~~~--~--~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+|.+...... . ........ . ++.+|+.++.|++++...|.+.+.
T Consensus 145 ~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 145 ADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred cccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 9998753321 1 11122222 2 678899999999999999988764
No 34
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=5.7e-18 Score=167.07 Aligned_cols=164 Identities=27% Similarity=0.314 Sum_probs=120.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....|+|+|.+|||||||+|+|++.. ..+++++++|.....+.+.+ ++..+.+|||||+.........
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~g---------- 225 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAG---------- 225 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcccc----------
Confidence 47899999999999999999999865 45788999999999998888 5678999999999753322111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh---cCCCeEEEEecccCCC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~Dl~ 316 (484)
+...+++.+..++++++|+|++......+. .+...+..+ +.++|+++|+||+|+.
T Consensus 226 ---------------------Lg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 226 ---------------------LGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred ---------------------HHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 224566778889999999998754322222 233334332 2368999999999987
Q ss_pred chhhhh--hHH-H-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 317 RKGIMQ--VSE-F-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~--~~~-~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... ... + ...+.+++++||+++.|++++++++.+.+.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 285 DEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred CchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 543211 111 1 2334688999999999999999999887754
No 35
>PRK00098 GTPase RsgA; Reviewed
Probab=99.77 E-value=9.7e-19 Score=170.78 Aligned_cols=144 Identities=22% Similarity=0.216 Sum_probs=103.9
Q ss_pred HhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCchh-h-hhhHH-HHhcCCCceeeecccCCC
Q 011492 269 AIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG-I-MQVSE-FWSLGFSPLPISAISGTG 343 (484)
Q Consensus 269 ~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~-~-~~~~~-~~~~~~~~i~vSa~~g~g 343 (484)
.+.++|.+++|+|+..+..... ..++..+.. .+.|+++|+||+|+.... . ..... +...+++++++||+++.|
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 3688999999999876543322 122222333 378999999999996322 1 11222 334578899999999999
Q ss_pred CchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceeeec
Q 011492 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEFTG 416 (484)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~~~ 416 (484)
+++|++.+. +..++++|+||+|||||+|+|+|.....++.+++ ||++.....+.
T Consensus 155 i~~L~~~l~------------------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~- 215 (298)
T PRK00098 155 LDELKPLLA------------------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLP- 215 (298)
T ss_pred HHHHHhhcc------------------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcC-
Confidence 998887762 2478999999999999999999988887777764 67655443332
Q ss_pred CCCCcEEEEEcCCCccCccc
Q 011492 417 PEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~ 436 (484)
. ...|+||||++..+++
T Consensus 216 -~--~~~~~DtpG~~~~~~~ 232 (298)
T PRK00098 216 -G--GGLLIDTPGFSSFGLH 232 (298)
T ss_pred -C--CcEEEECCCcCccCCC
Confidence 2 3489999999987664
No 36
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=1e-18 Score=163.42 Aligned_cols=105 Identities=34% Similarity=0.473 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.-.|+++|+||||||||+|+|+|.++..+++.+.|||+.+.+.... +..+++++||||++.+. ......+...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~-~~~QiIfvDTPGih~pk------~~l~~~m~~~ 78 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTT-DNAQIIFVDTPGIHKPK------HALGELMNKA 78 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEc-CCceEEEEeCCCCCCcc------hHHHHHHHHH
Confidence 3479999999999999999999999999999999999999988775 57899999999999873 4677889999
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
+..++..+|+++||+|+...+++.|+++++++
T Consensus 79 a~~sl~dvDlilfvvd~~~~~~~~d~~il~~l 110 (298)
T COG1159 79 ARSALKDVDLILFVVDADEGWGPGDEFILEQL 110 (298)
T ss_pred HHHHhccCcEEEEEEeccccCCccHHHHHHHH
Confidence 99999999999999999999999999999875
No 37
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.77 E-value=1.2e-18 Score=169.32 Aligned_cols=143 Identities=22% Similarity=0.236 Sum_probs=102.4
Q ss_pred HhhhcCeEEEEeeCCCCC-CcccH-HHHHHHHhhcCCCeEEEEecccCCCchhhhh--hHHHHhcCCCceeeecccCCCC
Q 011492 269 AIEESCVIIFLVDGQAGL-TAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQ--VSEFWSLGFSPLPISAISGTGT 344 (484)
Q Consensus 269 ~~~~~d~vilVvD~~~~~-~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~--~~~~~~~~~~~i~vSa~~g~gi 344 (484)
.+.++|.+++|+|+..+. +.... .++..+.. .++|+++|+||+|+.+..... ...+...+++++++||+++.|+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccH
Confidence 367899999999998776 32211 12222233 378999999999997642211 1223446788999999999999
Q ss_pred chhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-------CceecccceeeecC
Q 011492 345 GELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTGP 417 (484)
Q Consensus 345 ~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-------gtt~~~~~~~~~~~ 417 (484)
++|+..+.. ..++++|++|+|||||+|+|+|.....++.++ +||++.....+.
T Consensus 153 ~~L~~~L~~------------------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~-- 212 (287)
T cd01854 153 DELREYLKG------------------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLP-- 212 (287)
T ss_pred HHHHhhhcc------------------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcC--
Confidence 888877642 36899999999999999999998777666544 367765544432
Q ss_pred CCCcEEEEEcCCCccCcc
Q 011492 418 EGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 418 ~g~~i~liDTPG~~~~~~ 435 (484)
.+ .+|+||||++++.+
T Consensus 213 ~~--~~liDtPG~~~~~~ 228 (287)
T cd01854 213 GG--GLLIDTPGFREFGL 228 (287)
T ss_pred CC--CEEEECCCCCccCC
Confidence 22 38999999988764
No 38
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.77 E-value=2.1e-18 Score=163.14 Aligned_cols=145 Identities=23% Similarity=0.256 Sum_probs=106.6
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh---h-HHHHhcCCCceeeecccCCCCc
Q 011492 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ---V-SEFWSLGFSPLPISAISGTGTG 345 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~---~-~~~~~~~~~~i~vSa~~g~gi~ 345 (484)
+.+.|-+++|+.+..|......--.-++.....+...+||+||+|+....... . ..+...+++++.+|++++.|+.
T Consensus 77 v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~ 156 (301)
T COG1162 77 VANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLE 156 (301)
T ss_pred ccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHH
Confidence 45577778888776665444332222222333588889999999998754433 2 2345589999999999999999
Q ss_pred hhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-------CceecccceeeecCC
Q 011492 346 ELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTGPE 418 (484)
Q Consensus 346 ~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-------gtt~~~~~~~~~~~~ 418 (484)
+|...+.. ...+++|++|||||||+|+|.+....+|++++ .|||+.....+ ..
T Consensus 157 ~l~~~l~~------------------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~ 216 (301)
T COG1162 157 ELAELLAG------------------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PG 216 (301)
T ss_pred HHHHHhcC------------------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CC
Confidence 88888743 36799999999999999999998888887766 47777655443 22
Q ss_pred CCcEEEEEcCCCccCccc
Q 011492 419 GQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~~ 436 (484)
|. .||||||+++++++
T Consensus 217 gG--~iiDTPGf~~~~l~ 232 (301)
T COG1162 217 GG--WIIDTPGFRSLGLA 232 (301)
T ss_pred CC--EEEeCCCCCccCcc
Confidence 33 89999999999873
No 39
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.77 E-value=7.5e-18 Score=148.67 Aligned_cols=155 Identities=35% Similarity=0.447 Sum_probs=116.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.+|+++|++|+|||||+|+|.+.........++++.........+.+.++.+|||||+........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~-------------- 67 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIE-------------- 67 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHH--------------
Confidence 489999999999999999999987666777888888887777778888999999999865332110
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
..........+..+|++++|+|+..+....+...... ..+.|+++|+||+|+......
T Consensus 68 ----------------~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~-- 125 (157)
T cd04164 68 ----------------KIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL-- 125 (157)
T ss_pred ----------------HHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc--
Confidence 0001234456678999999999987665555443332 347999999999999764433
Q ss_pred HHHHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 324 ~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.......+++++||+++.|+++++++|...+
T Consensus 126 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 126 -LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 2233456899999999999999999987653
No 40
>PRK00089 era GTPase Era; Reviewed
Probab=99.77 E-value=7.9e-18 Score=164.83 Aligned_cols=164 Identities=32% Similarity=0.465 Sum_probs=123.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
...|+++|.+|||||||+|+|+|...+.+++.+.+|.....+....++.++.++||||+......
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~--------------- 69 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRA--------------- 69 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhH---------------
Confidence 45799999999999999999999988888888888888777666666678999999998642210
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch--hh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK--GI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~--~~ 320 (484)
+...+.+.+...+..+|++++|+|+..+....+..+...+... +.|+++|+||+|+... ..
T Consensus 70 ---------------l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~--~~pvilVlNKiDl~~~~~~l 132 (292)
T PRK00089 70 ---------------LNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV--KTPVILVLNKIDLVKDKEEL 132 (292)
T ss_pred ---------------HHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc--CCCEEEEEECCcCCCCHHHH
Confidence 1122334566678899999999999876666666666666543 7899999999999832 22
Q ss_pred hhhHHHHh---cCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 321 MQVSEFWS---LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 321 ~~~~~~~~---~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
......+. ...+++++||+++.|++++++.+...++..
T Consensus 133 ~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 133 LPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEG 173 (292)
T ss_pred HHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCC
Confidence 22222222 123689999999999999999999887643
No 41
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=3.9e-17 Score=169.88 Aligned_cols=184 Identities=28% Similarity=0.356 Sum_probs=135.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|||||||+|+|++.....++..+++|.+.....+.+++..+.+|||||+.........
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~----------- 278 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG----------- 278 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch-----------
Confidence 358999999999999999999999876677889999999988888888999999999998543221100
Q ss_pred ccCCCchhHHHHHHhhchHHHH-HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 242 GMEGIPLATREAAVARMPSMIE-RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
...+. .....++..+|++++|+|+..+.+..+..++..+... ++|+++|+||+|+.....
T Consensus 279 -----------------~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~--~~piIiV~NK~Dl~~~~~ 339 (472)
T PRK03003 279 -----------------HEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA--GRALVLAFNKWDLVDEDR 339 (472)
T ss_pred -----------------HHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccCChhH
Confidence 00000 1233457889999999999988888777776666554 899999999999975321
Q ss_pred hh----hHH--HHh-cCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhc
Q 011492 321 MQ----VSE--FWS-LGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVG 393 (484)
Q Consensus 321 ~~----~~~--~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg 393 (484)
.. ... +.. ...+++++||++|.|+++++..+.+.+.... .++ +++.+|.++.
T Consensus 340 ~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~------------~~i---------~t~~ln~~~~ 398 (472)
T PRK03003 340 RYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWD------------TRI---------PTGRLNAWLG 398 (472)
T ss_pred HHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc------------ccC---------CHHHHHHHHH
Confidence 11 111 111 1247899999999999999999988765332 123 5778888887
Q ss_pred Ccc
Q 011492 394 EDR 396 (484)
Q Consensus 394 ~~~ 396 (484)
...
T Consensus 399 ~~~ 401 (472)
T PRK03003 399 ELV 401 (472)
T ss_pred HHH
Confidence 643
No 42
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.77 E-value=3.5e-18 Score=175.85 Aligned_cols=156 Identities=33% Similarity=0.429 Sum_probs=119.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|++|+|||||+|+|++.+...+++.+++|.+.....+.+++.++.+|||||+..... ..+..
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~----~ie~~------- 283 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDD----EVEKI------- 283 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCcc----HHHHH-------
Confidence 5799999999999999999999987777888999999998888889999999999999863211 11100
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
-.+.+...+..+|++++|+|++.+.+..+..++ .. ..+.|+++|+||+|+.......
T Consensus 284 -------------------gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l---~~-~~~~piiiV~NK~DL~~~~~~~ 340 (449)
T PRK05291 284 -------------------GIERSREAIEEADLVLLVLDASEPLTEEDDEIL---EE-LKDKPVIVVLNKADLTGEIDLE 340 (449)
T ss_pred -------------------HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHH---Hh-cCCCCcEEEEEhhhccccchhh
Confidence 013355678899999999999877654433322 22 3478999999999997543221
Q ss_pred hHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 323 ~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...+.+++++||++|.|+++|++++.+.+.
T Consensus 341 ----~~~~~~~i~iSAktg~GI~~L~~~L~~~l~ 370 (449)
T PRK05291 341 ----EENGKPVIRISAKTGEGIDELREAIKELAF 370 (449)
T ss_pred ----hccCCceEEEEeeCCCCHHHHHHHHHHHHh
Confidence 223457899999999999999999988764
No 43
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.76 E-value=4.7e-18 Score=167.08 Aligned_cols=166 Identities=23% Similarity=0.311 Sum_probs=123.9
Q ss_pred HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHH-HH-hc-CCCceeeec
Q 011492 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSE-FW-SL-GFSPLPISA 338 (484)
Q Consensus 262 ~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~-~~-~~-~~~~i~vSa 338 (484)
+.++....+...|+++.|+|++.|.......+.+++. +++.++|+||+|+.+......+. +. .. +...+.+++
T Consensus 24 ~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~ 99 (322)
T COG1161 24 AKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSA 99 (322)
T ss_pred HHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEe
Confidence 3467778889999999999999999998888777765 45669999999999866544332 22 22 456789999
Q ss_pred ccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC
Q 011492 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE 418 (484)
Q Consensus 339 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~ 418 (484)
..+.+...+...+.....................+++++|.|||||||+||+|+|+..+.++..||+|++.+.+.+.
T Consensus 100 ~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~--- 176 (322)
T COG1161 100 KSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD--- 176 (322)
T ss_pred ecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC---
Confidence 99999888875444332111000000111223468999999999999999999999999999999999998876664
Q ss_pred CCcEEEEEcCCCccCcc
Q 011492 419 GQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~ 435 (484)
..+.|+||||+.-+..
T Consensus 177 -~~i~LlDtPGii~~~~ 192 (322)
T COG1161 177 -DGIYLLDTPGIIPPKF 192 (322)
T ss_pred -CCeEEecCCCcCCCCc
Confidence 3489999999987654
No 44
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=7.1e-18 Score=151.31 Aligned_cols=158 Identities=23% Similarity=0.314 Sum_probs=108.6
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-eeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
+|+++|++|||||||+|+|.+... .++..+++|.....+.+.+.+. .+.+|||||+.........
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~------------- 67 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKG------------- 67 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCC-------------
Confidence 689999999999999999998653 4566677777777777777776 8999999998532211110
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC-CCcccH-HHHHHHHhhc---CCCeEEEEecccCCCch
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAADE-EIADWLRKNY---MDKFIILAVNKCESPRK 318 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~-~~~~~~-~~~~~l~~~~---~~~p~ilV~NK~Dl~~~ 318 (484)
+...+...+..+|++++|+|++.+ ...... .+.+.+.... .++|+++|+||+|+.+.
T Consensus 68 ------------------~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 68 ------------------LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred ------------------chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 112334556679999999998765 222221 2333343321 36899999999998764
Q ss_pred hhhh-h-HHHHhc--CCCceeeecccCCCCchhhHHHHHH
Q 011492 319 GIMQ-V-SEFWSL--GFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 319 ~~~~-~-~~~~~~--~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.... . ..+... ..+++++||+++.|++++++++.+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 130 EELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 3321 1 122222 4578999999999999999988653
No 45
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1.2e-17 Score=170.65 Aligned_cols=166 Identities=21% Similarity=0.274 Sum_probs=120.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
....|+|+|.+|||||||+|+|++.. ..+++++++|.....+.+.+.+..+.++||||+........
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~------------ 224 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK------------ 224 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh------------
Confidence 46899999999999999999999876 45688999999999999988888999999999864222111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC----CcccHH-HHHHHHh------------hcCCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----TAADEE-IADWLRK------------NYMDK 304 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~----~~~~~~-~~~~l~~------------~~~~~ 304 (484)
.+...+++.+..+|++|+|+|++... ...+.. +...|.. .+.++
T Consensus 225 -------------------gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~k 285 (500)
T PRK12296 225 -------------------GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAER 285 (500)
T ss_pred -------------------HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCC
Confidence 12234556778899999999986421 111111 2222222 12468
Q ss_pred eEEEEecccCCCchhhh-hhH--HHHhcCCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 305 FIILAVNKCESPRKGIM-QVS--EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~~~-~~~--~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
|+++|+||+|+...... ... .+...+++++++||+++.|+++|+.++.+.+....
T Consensus 286 P~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 286 PRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred CEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 99999999999754321 111 22334678999999999999999999988876543
No 46
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.75 E-value=2.9e-17 Score=147.28 Aligned_cols=162 Identities=32% Similarity=0.464 Sum_probs=116.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|+|||||+|+|++.........++++.......+...+..+.+|||||+......... .+.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~-~e~-------- 72 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEG-IEK-------- 72 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhcc-HHH--------
Confidence 57899999999999999999998865566677788887777777778888999999998754221110 000
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh--h
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG--I 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~--~ 320 (484)
.........+..+|++++|+|+..+.+.....+...+... +.|+++|+||+|+.... .
T Consensus 73 ------------------~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 132 (174)
T cd01895 73 ------------------YSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEE--GKALVIVVNKWDLVEKDSKT 132 (174)
T ss_pred ------------------HHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc--CCCEEEEEeccccCCccHHH
Confidence 0012334556789999999999888776665555555443 78999999999987652 1
Q ss_pred hh-hHHHHh------cCCCceeeecccCCCCchhhHHHHH
Q 011492 321 MQ-VSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 321 ~~-~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.. ...... ...+++++||+++.|+.++++.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 133 MKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred HHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 11 111111 1357899999999999999988765
No 47
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=2.4e-17 Score=166.64 Aligned_cols=164 Identities=28% Similarity=0.371 Sum_probs=118.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
-...|+|+|.+|||||||+|+|++.+ +.+++++++|.....+.+.+. +..+.++||||+.........
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~g---------- 225 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVG---------- 225 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccch----------
Confidence 35699999999999999999999876 456789999999999888877 788999999999653222111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC---Cccc-HHHHHHHHhh---cCCCeEEEEeccc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---TAAD-EEIADWLRKN---YMDKFIILAVNKC 313 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~---~~~~-~~~~~~l~~~---~~~~p~ilV~NK~ 313 (484)
+...+++.+..++++++|+|++... ...+ ..+...|..+ +.++|+++|+||+
T Consensus 226 ---------------------Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~ 284 (424)
T PRK12297 226 ---------------------LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM 284 (424)
T ss_pred ---------------------HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence 2245566778899999999986431 1111 2233444442 2478999999999
Q ss_pred CCCchhhhhhHHHH-hcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 314 ESPRKGIMQVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 314 Dl~~~~~~~~~~~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
|+..... ....+. ..+.+++++||+++.|+++|++.+.+.+...
T Consensus 285 DL~~~~e-~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 285 DLPEAEE-NLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred CCcCCHH-HHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 9853221 111111 2336789999999999999999998877543
No 48
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.75 E-value=2.2e-17 Score=147.01 Aligned_cols=150 Identities=17% Similarity=0.228 Sum_probs=102.3
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceee--ecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~--~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.|+++|++|||||||+|+|++...... ...+++|.........+. +..+.+|||||+..+.
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~---------------- 65 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFI---------------- 65 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHH----------------
Confidence 689999999999999999997532211 123455666655556665 7789999999974311
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~- 320 (484)
......+..+|++++|+|+..+........+..+... ..+|+++|+||+|+.....
T Consensus 66 ----------------------~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~ 122 (164)
T cd04171 66 ----------------------KNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWL 122 (164)
T ss_pred ----------------------HHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHH
Confidence 2233556789999999998765434333433444332 2348999999999976421
Q ss_pred ----hhhHHHHh----cCCCceeeecccCCCCchhhHHHHH
Q 011492 321 ----MQVSEFWS----LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 321 ----~~~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
........ .+.+++++||+++.|+++++..+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 123 ELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 11112222 2468999999999999999988753
No 49
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=4.9e-18 Score=168.02 Aligned_cols=109 Identities=40% Similarity=0.583 Sum_probs=99.4
Q ss_pred hhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchh
Q 011492 365 VEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (484)
Q Consensus 365 ~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~ 444 (484)
......+.+++++|+||||||||+|+|++++++.|.++||||||+++..+.. +|-++.++||.|+|+.. ..++
T Consensus 211 g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~------d~VE 283 (454)
T COG0486 211 GKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD------DVVE 283 (454)
T ss_pred hhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc------cHHH
Confidence 3445667899999999999999999999999999999999999999998885 89999999999999742 6788
Q ss_pred HHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 445 ~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
+..+++++..++.+|++|||+|+...++++|..+.+
T Consensus 284 ~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~ 319 (454)
T COG0486 284 RIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIE 319 (454)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH
Confidence 889999999999999999999999989999988776
No 50
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.75 E-value=2.6e-17 Score=170.12 Aligned_cols=167 Identities=30% Similarity=0.398 Sum_probs=127.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
...+|+++|++|+|||||+|+|++.....+...+++|.+.....+..++..+.+|||||+......... .+
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~-~e-------- 241 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEG-VE-------- 241 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhh-HH--------
Confidence 357999999999999999999999877778889999999988888888889999999999754432210 00
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC-chhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP-RKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~-~~~~ 320 (484)
.+.......++..+|++++|+|+..+.+..+..+...+... ++|+++|+||+|+. ....
T Consensus 242 ------------------~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~ 301 (429)
T TIGR03594 242 ------------------KYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEA--GKALVIVVNKWDLVKDEKT 301 (429)
T ss_pred ------------------HHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEECcccCCCHHH
Confidence 01113455678899999999999998888887777776664 89999999999997 3221
Q ss_pred h-hhHHHH-----h-cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 321 M-QVSEFW-----S-LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 321 ~-~~~~~~-----~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. ...... . ...+++++||++|.|+.++++.+......
T Consensus 302 ~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 302 REEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred HHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 1 111111 1 13578999999999999999998876543
No 51
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=3.9e-17 Score=168.97 Aligned_cols=167 Identities=29% Similarity=0.397 Sum_probs=128.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|+|||||+|+|++.....++..+++|.+.....+...+..+.++||||+......... .
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~-~--------- 241 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEG-V--------- 241 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhH-H---------
Confidence 468999999999999999999999887788889999999988777788889999999998653332210 0
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
+ .+....+..++..+|++++|+|+..+.+..+..+...+... ++|+++|+||+|+......
T Consensus 242 --------------e---~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~--~~~~ivv~NK~Dl~~~~~~ 302 (435)
T PRK00093 242 --------------E---KYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEA--GRALVIVVNKWDLVDEKTM 302 (435)
T ss_pred --------------H---HHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCCCHHHH
Confidence 0 01113445678899999999999999888888877777665 7999999999999753322
Q ss_pred hhH-HHH------hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 322 QVS-EFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 322 ~~~-~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ... ....+++++||++|.|+.++++.+.+....
T Consensus 303 ~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 303 EEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 111 111 123588999999999999999998776543
No 52
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.74 E-value=1.3e-17 Score=166.92 Aligned_cols=184 Identities=22% Similarity=0.282 Sum_probs=122.5
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh--hhhH-----HHHhcCC---Cc
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQVS-----EFWSLGF---SP 333 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~-----~~~~~~~---~~ 333 (484)
+........++++++|+|+.+.......++.+.+ .++|+++|+||+|+.+... .... .....++ .+
T Consensus 55 ~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i 130 (360)
T TIGR03597 55 NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDI 130 (360)
T ss_pred HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcE
Confidence 4444555678999999998765555444444433 3789999999999975421 1111 1223454 47
Q ss_pred eeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc-----ceeecCCCCceec
Q 011492 334 LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED-----RTIVSPISGTTRD 408 (484)
Q Consensus 334 i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~-----~~~~~~~~gtt~~ 408 (484)
+.+||++|.|+++++..+.++.. +..++++|.+|||||||+|+|++.. .+.++..||||++
T Consensus 131 ~~vSAk~g~gv~eL~~~l~~~~~--------------~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~ 196 (360)
T TIGR03597 131 ILVSAKKGNGIDELLDKIKKARN--------------KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD 196 (360)
T ss_pred EEecCCCCCCHHHHHHHHHHHhC--------------CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee
Confidence 89999999999999999866421 2589999999999999999999853 4678899999998
Q ss_pred ccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccH
Q 011492 409 AIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 409 ~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
.....+ ++.+.|+||||+.....+. .......+..+ ..-+......+.++..+.+.-
T Consensus 197 ~~~~~~----~~~~~l~DtPG~~~~~~~~---~~l~~~~l~~~-~~~~~i~~~~~~l~~~q~~~~ 253 (360)
T TIGR03597 197 LIEIPL----DDGHSLYDTPGIINSHQMA---HYLDKKDLKYI-TPKKEIKPKTYQLNPNQTLFL 253 (360)
T ss_pred EEEEEe----CCCCEEEECCCCCChhHhh---hhcCHHHHhhc-CCCCccCceEEEeCCCCEEEE
Confidence 765543 3456899999997642111 11111111111 112344667777776554443
No 53
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=6.2e-17 Score=143.92 Aligned_cols=160 Identities=34% Similarity=0.474 Sum_probs=116.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|.+|+|||||+|+|++.........+.++...........+..+.+|||||+........
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~------------- 69 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLG------------- 69 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHH-------------
Confidence 5689999999999999999999987666666666666666655555667899999999865322111
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc-h-hh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-K-GI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~-~-~~ 320 (484)
..+.+.....+..+|.+++|+|+..+.......+...+... +.|+++|+||+|+.. . ..
T Consensus 70 -----------------~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~ 130 (168)
T cd04163 70 -----------------ERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDL 130 (168)
T ss_pred -----------------HHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHH
Confidence 01223445667889999999999887666666666666654 689999999999973 2 22
Q ss_pred hhhHHHH-hc--CCCceeeecccCCCCchhhHHHHHH
Q 011492 321 MQVSEFW-SL--GFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 321 ~~~~~~~-~~--~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
....... .. ..+++++|++++.|++++++.|.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 131 LPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 2222222 22 2478999999999999999998764
No 54
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.74 E-value=4.4e-17 Score=160.72 Aligned_cols=162 Identities=27% Similarity=0.343 Sum_probs=117.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....|+|+|.+|||||||+|+|++.. ..+++++++|.....+.+.+.+ ..+.++||||+.........
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~g---------- 224 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAG---------- 224 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccccc----------
Confidence 46899999999999999999999875 4578889999999998888876 78999999998653322111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC---CcccH-HHHHHHHhh---cCCCeEEEEeccc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---TAADE-EIADWLRKN---YMDKFIILAVNKC 313 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~---~~~~~-~~~~~l~~~---~~~~p~ilV~NK~ 313 (484)
+...+++.+..++++++|+|+.... ...+. .+.+.+... +.++|+++|+||+
T Consensus 225 ---------------------Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~ 283 (329)
T TIGR02729 225 ---------------------LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKI 283 (329)
T ss_pred ---------------------HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCc
Confidence 1244556678899999999987531 11111 122333332 2478999999999
Q ss_pred CCCchhhhh-hHH-HH-hcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 314 ESPRKGIMQ-VSE-FW-SLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 314 Dl~~~~~~~-~~~-~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
|+....... ... +. ..+.+++++||+++.|+++++.++.+.+
T Consensus 284 DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 284 DLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 997643221 111 11 2356889999999999999999987654
No 55
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=1.2e-17 Score=152.80 Aligned_cols=154 Identities=27% Similarity=0.393 Sum_probs=114.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-----------------eecCCCceeeeeEEEEE--eCCceeeEeecccccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----------------VVDEPGVTRDRMYGRSF--WGEHEFMLVDTGGVLN 223 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----------------~~~~~~~t~~~~~~~~~--~~~~~i~liDtpG~~~ 223 (484)
.++|+++|+.++|||||+++|++..... .....+.|......... ..+..++++||||+..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~ 82 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED 82 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc
Confidence 5689999999999999999998543110 01123555665566666 7788999999999864
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+ .......+..+|++|+|+|+..+......+.+..+... +
T Consensus 83 f--------------------------------------~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~ 122 (188)
T PF00009_consen 83 F--------------------------------------IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--G 122 (188)
T ss_dssp H--------------------------------------HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T
T ss_pred e--------------------------------------eecccceecccccceeeeeccccccccccccccccccc--c
Confidence 2 13455678899999999999988888888888888776 8
Q ss_pred CeEEEEecccCCCchhhhhhH-----HHH-hc------CCCceeeecccCCCCchhhHHHHHHhh
Q 011492 304 KFIILAVNKCESPRKGIMQVS-----EFW-SL------GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~~~-----~~~-~~------~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.|+++|+||+|+......... .+. .. .++++++||.+|.|+++|++.+.++++
T Consensus 123 ~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 123 IPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp -SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 999999999999854332221 111 11 247899999999999999999988764
No 56
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.73 E-value=3.9e-17 Score=167.10 Aligned_cols=160 Identities=31% Similarity=0.331 Sum_probs=118.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|||||||+|+|++....+++.++++|++.....+.+++.++.+|||||+...... .+..
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~----ie~~------ 271 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADF----VERL------ 271 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhH----HHHH------
Confidence 357999999999999999999999877788899999999999889999999999999998642211 0000
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
-...+..++..+|++++|+|++.+.+..+. ++..+.. .+.|+++|+||+|+......
T Consensus 272 --------------------gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~~~~~~ 328 (442)
T TIGR00450 272 --------------------GIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLKINSLE 328 (442)
T ss_pred --------------------HHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCCCcchh
Confidence 013445677899999999999876654443 3333332 37899999999999754211
Q ss_pred hhHHHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 322 ~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. .....+.+++.+||++ .|+.++++.+.+.+..
T Consensus 329 -~-~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 329 -F-FVSSKVLNSSNLSAKQ-LKIKALVDLLTQKINA 361 (442)
T ss_pred -h-hhhhcCCceEEEEEec-CCHHHHHHHHHHHHHH
Confidence 1 1123345788999998 6888888888776643
No 57
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=99.73 E-value=2.7e-17 Score=157.10 Aligned_cols=178 Identities=24% Similarity=0.338 Sum_probs=135.9
Q ss_pred CCchhHHHHHHhhc-hHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-h
Q 011492 245 GIPLATREAAVARM-PSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q 322 (484)
Q Consensus 245 G~~~~~~~~~v~~~-~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~ 322 (484)
|.....+......- ++.++..+...+..+|++|.|+|+++|.......+..+|++..+.+.+++|+||+||++.-.. .
T Consensus 185 g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~ 264 (572)
T KOG2423|consen 185 GVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAK 264 (572)
T ss_pred cchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHH
Confidence 44444444333333 355667778888999999999999999999999999999998788999999999999985433 3
Q ss_pred hHHHHhcCCCce--eeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeec
Q 011492 323 VSEFWSLGFSPL--PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVS 400 (484)
Q Consensus 323 ~~~~~~~~~~~i--~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~ 400 (484)
....+...+|.+ ..|-.+..|-..|+..+.++-+-.. ......|+++|.||+||||+||+|..++++.+.
T Consensus 265 Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~--------dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvA 336 (572)
T KOG2423|consen 265 WVRHLSKEYPTIAFHASINNSFGKGALIQLLRQFAKLHS--------DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVA 336 (572)
T ss_pred HHHHHhhhCcceeeehhhcCccchhHHHHHHHHHHhhcc--------CccceeeeeecCCCCchHHHHHHHhhccccccc
Confidence 344555666644 4465667777778887766543221 123457999999999999999999999999999
Q ss_pred CCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011492 401 PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 401 ~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
++||-|.-.+.+.++ +.|+|||+||+.-++
T Consensus 337 PIpGETKVWQYItLm----krIfLIDcPGvVyps 366 (572)
T KOG2423|consen 337 PIPGETKVWQYITLM----KRIFLIDCPGVVYPS 366 (572)
T ss_pred CCCCcchHHHHHHHH----hceeEecCCCccCCC
Confidence 999999876655543 679999999998764
No 58
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=4.1e-17 Score=164.18 Aligned_cols=165 Identities=23% Similarity=0.228 Sum_probs=117.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....|+|+|.||||||||+|+|++.+ ..++++|++|+....+.+.+.+ ..+.++||||+.........
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k-~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~---------- 226 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAG---------- 226 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc-ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhh----------
Confidence 35689999999999999999999876 5789999999999999988865 46999999999753322110
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC---CC-cccHHHHHHHHhh---cCCCeEEEEeccc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LT-AADEEIADWLRKN---YMDKFIILAVNKC 313 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~---~~-~~~~~~~~~l~~~---~~~~p~ilV~NK~ 313 (484)
+...++..+..+|++++|+|+... .. .....+.+.+... +.++|+++|+||+
T Consensus 227 ---------------------Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKi 285 (390)
T PRK12298 227 ---------------------LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKI 285 (390)
T ss_pred ---------------------HHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCC
Confidence 123445678899999999997621 11 1112233333332 2368999999999
Q ss_pred CCCchhhh-hhHH-HHh-cC--CCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 314 ESPRKGIM-QVSE-FWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 314 Dl~~~~~~-~~~~-~~~-~~--~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
|+...... .... +.. .+ .+++++||+++.|+++|++.|.+.+.+.
T Consensus 286 Dl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 286 DLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred ccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 98754322 1111 211 22 3689999999999999999998887643
No 59
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.72 E-value=1.4e-16 Score=144.39 Aligned_cols=160 Identities=24% Similarity=0.301 Sum_probs=105.7
Q ss_pred cCCCCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhh
Q 011492 156 GNVPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (484)
Q Consensus 156 ~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~ 234 (484)
...+....++|+++|.+|+|||||+|+|++.. ...++..+++|........ +..+.+|||||+........ ..
T Consensus 11 ~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpG~~~~~~~~~-~~-- 84 (179)
T TIGR03598 11 KQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---NDGFRLVDLPGYGYAKVSKE-EK-- 84 (179)
T ss_pred hhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---CCcEEEEeCCCCccccCChh-HH--
Confidence 34455668899999999999999999999875 4556667777776554322 24799999999754221110 00
Q ss_pred hhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccC
Q 011492 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 235 ~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~D 314 (484)
..+.. +...++.....++.+++|+|++.+....+..+..++... +.|+++|+||+|
T Consensus 85 ---------------------~~~~~-~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~--~~pviiv~nK~D 140 (179)
T TIGR03598 85 ---------------------EKWQK-LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER--GIPVLIVLTKAD 140 (179)
T ss_pred ---------------------HHHHH-HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEECcc
Confidence 00000 001122223456899999999888777777777777654 789999999999
Q ss_pred CCchhhh-----hhHHHHhc---CCCceeeecccCCCCc
Q 011492 315 SPRKGIM-----QVSEFWSL---GFSPLPISAISGTGTG 345 (484)
Q Consensus 315 l~~~~~~-----~~~~~~~~---~~~~i~vSa~~g~gi~ 345 (484)
+...... ........ ..+++++||++|+|++
T Consensus 141 ~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 141 KLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred cCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 9753211 11112221 2478999999999974
No 60
>PRK13796 GTPase YqeH; Provisional
Probab=99.72 E-value=3.5e-17 Score=163.97 Aligned_cols=146 Identities=28% Similarity=0.289 Sum_probs=103.8
Q ss_pred HHHHhhhcC-eEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-----hhhHH--HHhcCC---Cce
Q 011492 266 ATAAIEESC-VIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SPL 334 (484)
Q Consensus 266 ~~~~~~~~d-~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~--~~~~~~---~~i 334 (484)
.+..+...+ ++++|+|+.+....... .+.+...++|+++|+||+|+.+... ..... ....++ .++
T Consensus 62 ~l~~i~~~~~lIv~VVD~~D~~~s~~~----~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~ 137 (365)
T PRK13796 62 LLNGIGDSDALVVNVVDIFDFNGSWIP----GLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVV 137 (365)
T ss_pred HHHhhcccCcEEEEEEECccCCCchhH----HHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence 344555555 99999998764433333 3333334789999999999975321 11111 122344 578
Q ss_pred eeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcC-----cceeecCCCCceecc
Q 011492 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDA 409 (484)
Q Consensus 335 ~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~-----~~~~~~~~~gtt~~~ 409 (484)
.+||+++.|++++++.+.++.. +.+++++|.+|||||||+|+|++. ....++..||||++.
T Consensus 138 ~vSAk~g~gI~eL~~~I~~~~~--------------~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~ 203 (365)
T PRK13796 138 LISAQKGHGIDELLEAIEKYRE--------------GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDK 203 (365)
T ss_pred EEECCCCCCHHHHHHHHHHhcC--------------CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCcccee
Confidence 9999999999999999876531 247899999999999999999964 355689999999998
Q ss_pred cceeeecCCCCcEEEEEcCCCccC
Q 011492 410 IDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 410 ~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
+...+. + ...|+||||+...
T Consensus 204 ~~~~l~--~--~~~l~DTPGi~~~ 223 (365)
T PRK13796 204 IEIPLD--D--GSFLYDTPGIIHR 223 (365)
T ss_pred EEEEcC--C--CcEEEECCCcccc
Confidence 765542 2 3589999999654
No 61
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.72 E-value=4.9e-17 Score=145.47 Aligned_cols=151 Identities=20% Similarity=0.269 Sum_probs=104.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC---CceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+.|+++|++|+|||||+|+|++.... ....+++|........... +..+.+|||||+..+.
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~--------------- 64 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT--------------- 64 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---------------
Confidence 46999999999999999999976532 2233455555544444443 6789999999975321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
......+..+|++++|+|+..+........+.++... +.|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~--~~p~ivv~NK~Dl~~~~~ 119 (168)
T cd01887 65 -----------------------NMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAA--NVPFIVALNKIDKPNANP 119 (168)
T ss_pred -----------------------HHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEEEEEEceecccccH
Confidence 1112345789999999999876544444555555554 899999999999874321
Q ss_pred h---hhHH-H-------HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 321 M---QVSE-F-------WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 321 ~---~~~~-~-------~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
. .... + ....++++++||++|.|+.++++++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 120 ERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred HHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 1 1111 1 11235789999999999999999987654
No 62
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.72 E-value=8.9e-17 Score=147.47 Aligned_cols=153 Identities=20% Similarity=0.224 Sum_probs=105.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCC------cceeeecCCCceeeeeEEEEEeC--------------CceeeEeecccccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPGVTRDRMYGRSFWG--------------EHEFMLVDTGGVLN 223 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~------~~~~~~~~~~~t~~~~~~~~~~~--------------~~~i~liDtpG~~~ 223 (484)
.+|+++|++|+|||||+++|++. ........+++|.........+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999863 11122223456666555545444 66899999999742
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+ .+.+......+|.+++|+|+..+......+...+... .+
T Consensus 81 -------~-------------------------------~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~ 120 (192)
T cd01889 81 -------L-------------------------------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LC 120 (192)
T ss_pred -------H-------------------------------HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cC
Confidence 1 1334455677999999999987655544443333333 27
Q ss_pred CeEEEEecccCCCchhhh----hh-HH-----HH---hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 304 KFIILAVNKCESPRKGIM----QV-SE-----FW---SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~----~~-~~-----~~---~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.|+++|+||+|+...... .. .. +. ..+++++++||++|.|+++|++.+...+.
T Consensus 121 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 121 KKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 899999999998743221 11 11 10 13468899999999999999999988664
No 63
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=7.3e-17 Score=151.52 Aligned_cols=202 Identities=27% Similarity=0.276 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHhHhhhccccchhhhhhhhhccccc-cccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCC
Q 011492 118 KDAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKT-TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG 196 (484)
Q Consensus 118 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~ 196 (484)
+.+++..+..+.+++.+.+++.... ++ +.+.. ......+....+|+++|.|++|||||+|+|++.+ ..+..+++
T Consensus 21 nKaTe~hig~lKaklA~Lr~El~~~--~~--~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~~LTnt~-seva~y~F 95 (365)
T COG1163 21 NKATEHHIGLLKAKLAELREELEKR--KS--KSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLNKLTNTK-SEVADYPF 95 (365)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhhh--hh--cCCCCCCcceEeccCCeEEEEEcCCCccHHHHHHHHhCCC-ccccccCc
Confidence 4567777777887777665554433 11 11111 3445567778999999999999999999999976 57888999
Q ss_pred ceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeE
Q 011492 197 VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (484)
Q Consensus 197 ~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 276 (484)
+|..++.+.+.++|..++++|+||+..........+ +++++.+++||++
T Consensus 96 TTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG-------------------------------~~vlsv~R~ADlI 144 (365)
T COG1163 96 TTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRG-------------------------------RQVLSVARNADLI 144 (365)
T ss_pred eecccccceEeecCceEEEEcCcccccCcccCCCCc-------------------------------ceeeeeeccCCEE
Confidence 999999999999999999999999986555443211 4566778888999
Q ss_pred EEEeeCCCC------------------------------------------CCcccHHHHH-HHHh--------------
Q 011492 277 IFLVDGQAG------------------------------------------LTAADEEIAD-WLRK-------------- 299 (484)
Q Consensus 277 ilVvD~~~~------------------------------------------~~~~~~~~~~-~l~~-------------- 299 (484)
++|+|+..+ ++..+...++ .|.+
T Consensus 145 iiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dv 224 (365)
T COG1163 145 IIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDV 224 (365)
T ss_pred EEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCC
Confidence 998884322 2222222222 2222
Q ss_pred -----------hcCCCeEEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 300 -----------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 300 -----------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+..-+|.++|+||+|+...+.. .........+++||.++.|+++|.+.|...+.-.
T Consensus 225 TlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~---~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~li 291 (365)
T COG1163 225 TLDDLIDALEGNRVYKPALYVVNKIDLPGLEEL---ERLARKPNSVPISAKKGINLDELKERIWDVLGLI 291 (365)
T ss_pred cHHHHHHHHhhcceeeeeEEEEecccccCHHHH---HHHHhccceEEEecccCCCHHHHHHHHHHhhCeE
Confidence 1123588999999999874322 2223334889999999999999999999887533
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.72 E-value=1.1e-16 Score=142.62 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=101.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
++|+++|.+|||||||++++.+..... ...+............+++ ..+.+|||||...+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--------------- 64 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQT--------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhh---------------
Confidence 489999999999999999998764311 1111111112222233333 3578999999764332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
....++..+|++++|+|...+.+..+. .++..+.+...+.|+++|+||+|+.....
T Consensus 65 -----------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~ 121 (161)
T cd04124 65 -----------------------MHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVT 121 (161)
T ss_pred -----------------------hhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHH
Confidence 223566889999999998765443332 34444544445789999999999864322
Q ss_pred hhhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 321 MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ~~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.....+ ...+++++++||++|.|++++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 158 (161)
T cd04124 122 QKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222 234568899999999999999999887653
No 65
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.71 E-value=3.8e-17 Score=147.26 Aligned_cols=154 Identities=24% Similarity=0.263 Sum_probs=106.8
Q ss_pred EEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhhcccCCC
Q 011492 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (484)
Q Consensus 168 l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (484)
++|++|||||||+|+|.+... .+...+++|.....+...+. +.++.+|||||+.......+..
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~--------------- 64 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL--------------- 64 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCc---------------
Confidence 579999999999999998764 45677888888887777787 8899999999985422211111
Q ss_pred chhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-----C-cccH-HHHHHHHhh--------cCCCeEEEEec
Q 011492 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-----T-AADE-EIADWLRKN--------YMDKFIILAVN 311 (484)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-----~-~~~~-~~~~~l~~~--------~~~~p~ilV~N 311 (484)
.+.+...+..+|++++|+|+..+. . .... .+...+... ..++|+++|+|
T Consensus 65 ----------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~N 128 (176)
T cd01881 65 ----------------GNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLN 128 (176)
T ss_pred ----------------cHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEE
Confidence 123345567899999999987653 1 1111 122222211 13789999999
Q ss_pred ccCCCchhhhhhH----HHHhcCCCceeeecccCCCCchhhHHHHH
Q 011492 312 KCESPRKGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 312 K~Dl~~~~~~~~~----~~~~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
|+|+......... .....+.+++++||+++.|++++++.+..
T Consensus 129 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 129 KIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred chhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 9999764433222 12223457899999999999999998764
No 66
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.71 E-value=1e-16 Score=148.91 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=130.0
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...+.+.|+++|.||+|||||.|.+.|.+.+.++....+|+....+.+.-+..++.++||||+........ .
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~-~------- 139 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRR-H------- 139 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhh-H-------
Confidence 34458899999999999999999999999999999999999999999998899999999999975332211 0
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
.+...+.+..+.++.++|++++|+|++.+-....+.++..+..+ .+.|-++|+||+|..++
T Consensus 140 ------------------~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~ 200 (379)
T KOG1423|consen 140 ------------------HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQ 200 (379)
T ss_pred ------------------HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchh
Confidence 00111224566788999999999999876667777777777765 58999999999997653
Q ss_pred hhh-------------h--hHHHHh--------------cCC----CceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIM-------------Q--VSEFWS--------------LGF----SPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~-------------~--~~~~~~--------------~~~----~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... . ..+... .++ .+|.+||++|.|+++|.+++....+
T Consensus 201 k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 201 KRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred hhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 210 0 001000 012 3789999999999999999987654
No 67
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.71 E-value=1.4e-16 Score=140.84 Aligned_cols=151 Identities=29% Similarity=0.373 Sum_probs=107.7
Q ss_pred EEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCc
Q 011492 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIP 247 (484)
Q Consensus 168 l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~ 247 (484)
|+|++|+|||||+|+|++.. ...+..+++|.......+.+.+..+.+|||||+..........
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~---------------- 63 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDE---------------- 63 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhH----------------
Confidence 57999999999999999875 4566778888888888888888899999999997644321100
Q ss_pred hhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-h-h
Q 011492 248 LATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q-V 323 (484)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~-~ 323 (484)
......+ ..+|++++|+|+..+.. ...+...+... ++|+++|+||+|+...... . .
T Consensus 64 ----------------~~~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~ 123 (158)
T cd01879 64 ----------------KVARDFLLGEKPDLIVNVVDATNLER--NLYLTLQLLEL--GLPVVVALNMIDEAEKRGIKIDL 123 (158)
T ss_pred ----------------HHHHHHhcCCCCcEEEEEeeCCcchh--HHHHHHHHHHc--CCCEEEEEehhhhcccccchhhH
Confidence 0111222 48999999999875422 22333344443 7999999999999754211 1 1
Q ss_pred HHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 324 SEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 324 ~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
..+ ...+.+++++||.++.|+.++++.+....
T Consensus 124 ~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 124 DKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred HHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 111 22467899999999999999999887653
No 68
>PRK04213 GTP-binding protein; Provisional
Probab=99.70 E-value=4.1e-16 Score=144.12 Aligned_cols=165 Identities=31% Similarity=0.422 Sum_probs=104.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|++.. ...+..+++|..... +.+. .+.+|||||+...........
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~~~--------- 73 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKEVQ--------- 73 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHHHH---------
Confidence 46799999999999999999999876 345567777766543 2332 689999999743222111000
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc-----------ccHHHHHHHHhhcCCCeEEEEe
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA-----------ADEEIADWLRKNYMDKFIILAV 310 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~-----------~~~~~~~~l~~~~~~~p~ilV~ 310 (484)
+++...+...+...+..++++++|+|+...... .+.++...+... +.|+++|+
T Consensus 74 --------------~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~p~iiv~ 137 (201)
T PRK04213 74 --------------EKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL--GIPPIVAV 137 (201)
T ss_pred --------------HHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc--CCCeEEEE
Confidence 011111112222345567899999997542211 123344455443 89999999
Q ss_pred cccCCCchhh--hh-hHHHHhc-------CCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 311 NKCESPRKGI--MQ-VSEFWSL-------GFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 311 NK~Dl~~~~~--~~-~~~~~~~-------~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
||+|+..... .. ....... +.+++++||++| |+++++++|.+.+..
T Consensus 138 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 138 NKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred ECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 9999865431 11 1111111 125799999999 999999999887653
No 69
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.2e-16 Score=157.58 Aligned_cols=166 Identities=31% Similarity=0.363 Sum_probs=128.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..+.|+|+|+||+|||||+|+|......++++.+|+|++.....++++|.++.++||+|+..... ...+.+.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~g----- 338 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALG----- 338 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHh-----
Confidence 36899999999999999999999999999999999999999999999999999999999976211 1112211
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc----------CCCeEEEEec
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----------MDKFIILAVN 311 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~----------~~~p~ilV~N 311 (484)
.+++...+..+|++++|+|+....+..+..+.+.+.... ...+++++.|
T Consensus 339 ---------------------I~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~n 397 (531)
T KOG1191|consen 339 ---------------------IERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVAN 397 (531)
T ss_pred ---------------------HHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEec
Confidence 167778899999999999998777888877777666532 2367899999
Q ss_pred ccCCCchh--hhh-hHHHHh----cCCCce-eeecccCCCCchhhHHHHHHhh
Q 011492 312 KCESPRKG--IMQ-VSEFWS----LGFSPL-PISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 312 K~Dl~~~~--~~~-~~~~~~----~~~~~i-~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
|+|+..+. ... ...+.. ..++++ .+|+++++|+..|...+.+.+.
T Consensus 398 k~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~ 450 (531)
T KOG1191|consen 398 KSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVE 450 (531)
T ss_pred hhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHH
Confidence 99987651 111 111222 134554 4999999999999988876553
No 70
>KOG2484 consensus GTPase [General function prediction only]
Probab=99.70 E-value=1.1e-16 Score=153.95 Aligned_cols=160 Identities=22% Similarity=0.314 Sum_probs=120.9
Q ss_pred HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHHHHhcCCCceeeecccC
Q 011492 263 ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFWSLGFSPLPISAISG 341 (484)
Q Consensus 263 ~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~~~~~~i~vSa~~g 341 (484)
.+.+...+..+|+||.|+|+++|+.....++.+++.+...++.+|+|+||+|+++.+... +..|+...+|.+..-|-++
T Consensus 137 ~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~ 216 (435)
T KOG2484|consen 137 DKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQ 216 (435)
T ss_pred HHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccc
Confidence 356777889999999999999999999999999887665579999999999999876654 4566666666544433332
Q ss_pred CC--------------CchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCcee
Q 011492 342 TG--------------TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTR 407 (484)
Q Consensus 342 ~g--------------i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~ 407 (484)
.. .+.++..+..+. .........+++++|.|||||||+||+|..+..+.++..||.|+
T Consensus 217 ~~~~~~~~~~~s~c~gae~l~~~lgny~--------~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~ 288 (435)
T KOG2484|consen 217 MQNSNSKNLQSSVCFGAETLMKVLGNYC--------RKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTR 288 (435)
T ss_pred cccccccccccchhhhHHHHHHHhcCcc--------cccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchh
Confidence 21 122222222211 12233455799999999999999999999999999999999999
Q ss_pred cccceeeecCCCCcEEEEEcCCCccCc
Q 011492 408 DAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 408 ~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
..+.+.+ +..|.|+|.||+.-+.
T Consensus 289 smqeV~L----dk~i~llDsPgiv~~~ 311 (435)
T KOG2484|consen 289 SMQEVKL----DKKIRLLDSPGIVPPS 311 (435)
T ss_pred hhhheec----cCCceeccCCceeecC
Confidence 8876654 4578999999997643
No 71
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=1.4e-16 Score=143.55 Aligned_cols=149 Identities=20% Similarity=0.268 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|||||||+++|.+.......++. ......+.+++..+.+|||||...+.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~----g~~~~~~~~~~~~l~l~D~~G~~~~~---------------- 72 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTL----GFQIKTLEYEGYKLNIWDVGGQKTLR---------------- 72 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCcc----ccceEEEEECCEEEEEEECCCCHHHH----------------
Confidence 4679999999999999999999987432222222 22333455667789999999975421
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHh-hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
.....++..+|++++|+|+..+..... ..+..++.. ...+.|+++|+||+|+...
T Consensus 73 ----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 73 ----------------------PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA 130 (173)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC
Confidence 122345678999999999876532211 122222222 2257899999999998753
Q ss_pred hhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHH
Q 011492 319 GIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 319 ~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~ 352 (484)
..... ..+. ...++++++||++|.|++++++++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 131 LSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred CCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHh
Confidence 22111 1122 2345789999999999999998875
No 72
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=2.8e-16 Score=148.37 Aligned_cols=163 Identities=28% Similarity=0.370 Sum_probs=122.2
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
+...+.|++.|+||||||||+++|++.+ ..+.++|+||+....|.+..++..++++||||+.+.+-...
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~Er---------- 233 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEER---------- 233 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHh----------
Confidence 3468999999999999999999999987 57889999999999999999999999999999987543221
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhh-cCeEEEEeeCCCCCCc--cc-HHHHHHHHhhcCCCeEEEEecccCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQAGLTA--AD-EEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~vilVvD~~~~~~~--~~-~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
+.+++++..++.+ .++++|++|.+..... .. ..+++.+...+. .|+++|+||+|.
T Consensus 234 --------------------N~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~ 292 (346)
T COG1084 234 --------------------NEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDI 292 (346)
T ss_pred --------------------cHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 2245677777666 7899999998764333 22 235556666654 899999999999
Q ss_pred CchhhhhhHH--HHhcCC-CceeeecccCCCCchhhHHHHHH
Q 011492 316 PRKGIMQVSE--FWSLGF-SPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 316 ~~~~~~~~~~--~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...+...... ....+. ....+++..+.+++.+...+...
T Consensus 293 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 293 ADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 8644333322 222232 46778888888888887776554
No 73
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=1.6e-16 Score=148.66 Aligned_cols=161 Identities=23% Similarity=0.273 Sum_probs=120.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce-eeEeeccccccccCCCchhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.....|+++|.||+|||||+|+|...+ +.+..+++||.....+.+.+++.. +++-|.||+.....+.....
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AK-pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG------- 265 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAK-PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLG------- 265 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccC-CcccccceeeeccccceeeccccceeEeccCccccccccccCccc-------
Confidence 357789999999999999999999876 578999999999999988887765 99999999988766655332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHH-------HHHHhhcCCCeEEEEecc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA-------DWLRKNYMDKFIILAVNK 312 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~-------~~l~~~~~~~p~ilV~NK 312 (484)
..+++.+..|+.++||+|.+.+........+ +...+.+.++|.++|+||
T Consensus 266 ------------------------~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNK 321 (366)
T KOG1489|consen 266 ------------------------YKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANK 321 (366)
T ss_pred ------------------------HHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEec
Confidence 5677888999999999998766221111111 223334568999999999
Q ss_pred cCCCchhhhhhHHHH-hc-CCCceeeecccCCCCchhhHHHHH
Q 011492 313 CESPRKGIMQVSEFW-SL-GFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 313 ~Dl~~~~~~~~~~~~-~~-~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
+|+.+.+......+. .. +..++++||++++|+.+|+..+..
T Consensus 322 iD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 322 IDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhh
Confidence 999643322111111 12 224899999999999999888764
No 74
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.70 E-value=2.9e-16 Score=170.89 Aligned_cols=166 Identities=29% Similarity=0.369 Sum_probs=124.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|||||||+|+|++.+...++..+++|.+.....+.+++..+.+|||||+........ .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~--~--------- 517 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLT--G--------- 517 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccch--h---------
Confidence 35899999999999999999999987667788999999998888888999999999999864221110 0
Q ss_pred ccCCCchhHHHHHHhhchHHH-HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 242 GMEGIPLATREAAVARMPSMI-ERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~-~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
...+ ......++..+|++++|+|+..+.+..+..+...+... ++|+++|+||+|+.....
T Consensus 518 -----------------~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~--~~piIiV~NK~DL~~~~~ 578 (712)
T PRK09518 518 -----------------AEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA--GRALVLVFNKWDLMDEFR 578 (712)
T ss_pred -----------------HHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEEchhcCChhH
Confidence 0000 02234567889999999999988888777776666554 899999999999976432
Q ss_pred hhhHH-HHh------cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 321 MQVSE-FWS------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 321 ~~~~~-~~~------~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ... ...+++++||++|.|++++++.+.+....
T Consensus 579 ~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 579 RQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred HHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11111 111 12367899999999999999999887653
No 75
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=3.6e-16 Score=143.89 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=103.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+.+... ...|.++.......+.+++. .+.+|||||+..+......
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~----------- 68 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQ----------- 68 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchh-----------
Confidence 479999999999999999999765322 12333333333334455663 5789999998643321100
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh----cCCCeEEEEecccCCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESP 316 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~Dl~ 316 (484)
.+.......+..+|++|+|+|+..+.+.... .+...+.+. ..+.|+++|+||+|+.
T Consensus 69 -------------------e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~ 129 (198)
T cd04142 69 -------------------EWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQ 129 (198)
T ss_pred -------------------HHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccc
Confidence 0011233456789999999998765433322 223333332 2468999999999996
Q ss_pred chhhhhh--H-HH--HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 317 RKGIMQV--S-EF--WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~~~~--~-~~--~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....... . .+ ...+.+++++||++|.|++++++.+...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~~ 174 (198)
T cd04142 130 RHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISAT 174 (198)
T ss_pred ccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 5322111 1 12 124568899999999999999998876553
No 76
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.69 E-value=7e-16 Score=141.85 Aligned_cols=168 Identities=22% Similarity=0.276 Sum_probs=112.2
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011492 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.....++|+++|++|+|||||+|+|++.. .......+++|....... + +.++.+|||||+........ ..
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~-~~----- 90 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKE-EK----- 90 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCch-HH-----
Confidence 34468899999999999999999999864 455666777776554322 2 46799999999754221110 00
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
. ++. .+..........++++++|+|+..+....+.++..++... +.|+++++||+|+..
T Consensus 91 ---------------~---~~~-~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~--~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 91 ---------------E---KWQ-KLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY--GIPVLIVLTKADKLK 149 (196)
T ss_pred ---------------H---HHH-HHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc--CCcEEEEEECcccCC
Confidence 0 000 0111122333455788899998777666655666666554 789999999999976
Q ss_pred hhhhhh-----HHHHh-cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 318 KGIMQV-----SEFWS-LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~~-----~~~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....+. ..... ...+++++||+++.|++++++.+.+.++
T Consensus 150 ~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 150 KGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 432221 11222 2467899999999999999999987764
No 77
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.69 E-value=3.5e-16 Score=142.62 Aligned_cols=152 Identities=26% Similarity=0.328 Sum_probs=107.7
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeee---------------cCCCceeeeeEEEEEeCCceeeEeeccccccccCCCc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP 229 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~ 229 (484)
+|+++|.+|+|||||+|+|++....... ...+.+.........+.+..+.+|||||+....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~---- 76 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFS---- 76 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHH----
Confidence 4899999999999999999876532211 122344444445556667789999999975321
Q ss_pred hhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEE
Q 011492 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILA 309 (484)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV 309 (484)
......+..+|.+++|+|+..+.......++..+.. .+.|+++|
T Consensus 77 ----------------------------------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv 120 (189)
T cd00881 77 ----------------------------------SEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVA 120 (189)
T ss_pred ----------------------------------HHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEE
Confidence 233455678999999999988776665566665555 38999999
Q ss_pred ecccCCCchhh-hh----hHHHH---------------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 310 VNKCESPRKGI-MQ----VSEFW---------------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 310 ~NK~Dl~~~~~-~~----~~~~~---------------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+||+|+..... .. ..... ....+++++||++|.|+.+++.++.+.++
T Consensus 121 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 121 INKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred EECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 99999975221 11 11111 12457899999999999999999988764
No 78
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=3.2e-16 Score=141.90 Aligned_cols=152 Identities=25% Similarity=0.326 Sum_probs=98.7
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCccee--------eec------CCCceeeeeEEEEEe-----CCceeeEeeccccccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAI--------VVD------EPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNV 224 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~--------~~~------~~~~t~~~~~~~~~~-----~~~~i~liDtpG~~~~ 224 (484)
++|+++|++|+|||||+++|++..... ..+ ..+.+.........+ .+..+.+|||||+..+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 369999999999999999998642111 000 123333332222222 3445789999998642
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCC
Q 011492 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (484)
. .....++..+|++|+|+|+..+....+......+.. .+.
T Consensus 81 ~--------------------------------------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~ 120 (179)
T cd01890 81 S--------------------------------------YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNL 120 (179)
T ss_pred H--------------------------------------HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCC
Confidence 1 233356678999999999887655544444333333 378
Q ss_pred eEEEEecccCCCchhhhhh-HHH-HhcCC---CceeeecccCCCCchhhHHHHHHh
Q 011492 305 FIILAVNKCESPRKGIMQV-SEF-WSLGF---SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~~~~~-~~~-~~~~~---~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
|+++|+||+|+........ ..+ ...++ .++++||++|.|++++++++...+
T Consensus 121 ~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 121 EIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 9999999999864321111 111 11233 478999999999999999997765
No 79
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.69 E-value=8.9e-17 Score=144.16 Aligned_cols=149 Identities=20% Similarity=0.230 Sum_probs=97.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|.+|||||||+++|........ .+ |.......+...+..+.+|||||.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~--~~--t~g~~~~~~~~~~~~~~l~Dt~G~~~~~----------------- 67 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT--IP--TVGFNVETVTYKNVKFNVWDVGGQDKIR----------------- 67 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc--cC--CcccceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 57999999999999999999986543222 22 1122222344566789999999985421
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|++|+|+|+..+.+.. ...+...+.. ...+.|+++|+||+|+....
T Consensus 68 ---------------------~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 126 (168)
T cd04149 68 ---------------------PLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126 (168)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC
Confidence 12234568899999999987653322 1222233322 12468999999999986421
Q ss_pred h-hhhHHHH------hcCCCceeeecccCCCCchhhHHHHH
Q 011492 320 I-MQVSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~-~~~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
. .+...+. ...++++++||++|.|+.+++.+|.+
T Consensus 127 ~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 127 KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred CHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 1 1111111 11235789999999999999998853
No 80
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.69 E-value=2e-16 Score=140.65 Aligned_cols=151 Identities=18% Similarity=0.186 Sum_probs=99.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC----CceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG----EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.||+++|.+|+|||||++++++.... ....+..........+.+. ...+.+|||||...+.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------------- 65 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFT-KDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFD-------------- 65 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHH--------------
Confidence 47999999999999999999976421 1112222222222333333 3468999999965322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 66 ------------------------AITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred ------------------------HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 1223556889999999998765433221 122233333457899999999998753
Q ss_pred hhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHH
Q 011492 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 319 ~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.... ... ....+++++++||++|.|++++++.+..
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE 160 (162)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3211 111 2335678999999999999999998865
No 81
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.69 E-value=3.3e-16 Score=161.50 Aligned_cols=157 Identities=29% Similarity=0.333 Sum_probs=119.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|+||||||||+|+|+|.+ ..+++.||.|.+...+.....+..+.++|+||.++......+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D------------ 69 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED------------ 69 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch------------
Confidence 4579999999999999999999987 689999999999999999999999999999999875543221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhh--hcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
++.++..+. .+|+++.|+|+.+ -..+..+.-.+.+. +.|+++++|++|..++.-
T Consensus 70 --------------------E~Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~--g~p~ilaLNm~D~A~~~G 125 (653)
T COG0370 70 --------------------EKVARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLEL--GIPMILALNMIDEAKKRG 125 (653)
T ss_pred --------------------HHHHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHc--CCCeEEEeccHhhHHhcC
Confidence 123334443 4799999999764 12222222234443 899999999999876532
Q ss_pred ---hhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 321 ---MQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ---~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....-....|.|+++++|++|+|+++++..+.+...
T Consensus 126 i~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~ 164 (653)
T COG0370 126 IRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE 164 (653)
T ss_pred CcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence 222223457899999999999999999998876544
No 82
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.69 E-value=2.3e-16 Score=140.18 Aligned_cols=152 Identities=19% Similarity=0.205 Sum_probs=103.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|++|||||||+++|++.+.. ....+..+.+.....+.+.+. .+.+|||||.....
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~---------------- 63 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFR---------------- 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHH----------------
Confidence 37999999999999999999987642 244555555555555556553 58999999964321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .++..+.. ...+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~ 121 (161)
T cd01861 64 ----------------------SLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKR 121 (161)
T ss_pred ----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccC
Confidence 2233556889999999998765333221 22232322 21258999999999995432
Q ss_pred hhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 IMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ... ....+.+++++||+++.|+++++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 122 QVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred ccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence 111 111 22345788999999999999999998764
No 83
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=3.5e-16 Score=139.34 Aligned_cols=153 Identities=15% Similarity=0.109 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|.+|+|||||++++++... .....+++.........+.+. .+.+|||||...+.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 64 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS--------------- 64 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh---------------
Confidence 46999999999999999999987642 333334433333334445553 57889999976432
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|.+++|+|+..+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 65 -----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~ 121 (164)
T cd04145 65 -----------------------AMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEH 121 (164)
T ss_pred -----------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccc
Confidence 1223556789999999998764432221 122222221 13689999999999865
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ....+ ...+++++++||++|.|++++++.+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 122 QRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 3211 11122 23467899999999999999999987654
No 84
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.69 E-value=3.1e-16 Score=140.36 Aligned_cols=154 Identities=18% Similarity=0.135 Sum_probs=99.7
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.||+++|.+|||||||+++++..... ...++.+. ......+.. ....+.+|||||...+.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 67 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV--EVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRD----------- 67 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee--EEEEEEEEECCEEEEEEEEECCCChhhccccH-----------
Confidence 48999999999999999999855321 11111111 111111222 234689999999865433221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++|+|+|...+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 68 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~ 120 (166)
T cd00877 68 ---------------------------GYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRK 120 (166)
T ss_pred ---------------------------HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccccc
Confidence 345679999999998765443322 2334444443479999999999987433
Q ss_pred hh-hhHHHH-hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 320 IM-QVSEFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 320 ~~-~~~~~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.. ....+. ....+++++||++|.|++++++++.+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 121 VKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 21 112222 334578999999999999999999877643
No 85
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.68 E-value=2.8e-16 Score=144.71 Aligned_cols=154 Identities=19% Similarity=0.162 Sum_probs=104.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+.|+++|..|||||||++++...... ....+..+.......+.+++ ..+.+|||+|...+..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~-~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~--------------- 64 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFC-EACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--------------- 64 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHH---------------
Confidence 36899999999999999999876431 11122223344444556665 4579999999865322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~~ 319 (484)
....++..+|++|+|+|.+.+.+.... .+...+... ..+.|+++|+||+|+....
T Consensus 65 -----------------------l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~ 121 (202)
T cd04120 65 -----------------------ITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121 (202)
T ss_pred -----------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccccc
Confidence 223567889999999998876544333 233334433 2468999999999986432
Q ss_pred hhh---hHHHH-h-cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQ---VSEFW-S-LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~---~~~~~-~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ...+. . .++.++++||++|.|+++++.++...+.
T Consensus 122 ~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~ 163 (202)
T cd04120 122 EISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 163 (202)
T ss_pred ccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 211 11222 2 2567899999999999999999987664
No 86
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.68 E-value=2.6e-16 Score=140.72 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=98.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcce---eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+|+++|++|||||||+++|.+.... ........|.......+.+.+..+.+|||||+..+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---------------- 64 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---------------- 64 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH----------------
Confidence 5899999999999999999865321 111122344455556677778899999999985421
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHh-hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+..... ..+..++.. ...+.|+++|+||+|+...
T Consensus 65 ----------------------~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 65 ----------------------SLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 223355788999999999865432111 111222221 1247899999999998654
Q ss_pred hhhh-hHHHHh--------cCCCceeeecccCCCCchhhHHHHH
Q 011492 319 GIMQ-VSEFWS--------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 319 ~~~~-~~~~~~--------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.... ...+.. ...+++++||++|.|+++++++|..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 123 LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred CCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 2111 111111 2347899999999999999998853
No 87
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.68 E-value=3.6e-16 Score=138.75 Aligned_cols=151 Identities=19% Similarity=0.200 Sum_probs=98.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+|++++... .....+++.........+++. .+.+|||||...+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 63 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS---------------- 63 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH----------------
Confidence 5899999999999999999997653 222333333333334455553 36789999975422
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
.....++..++.+++|+|.....+.... .+...+.+. ..+.|+++|+||+|+...
T Consensus 64 ----------------------~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 64 ----------------------AMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred ----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 1223456789999999997654322221 122223222 236899999999998753
Q ss_pred hhh--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 319 GIM--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 319 ~~~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ....+ ...+.+++++||++|.|++++++.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 122 TVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred eecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence 221 11112 2346688999999999999999988754
No 88
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.68 E-value=4.3e-16 Score=138.97 Aligned_cols=152 Identities=18% Similarity=0.211 Sum_probs=100.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+++++... ....+.+++.......+.+++. .+.+|||||...+...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGI--FVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAM-------------- 65 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC--CCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhH--------------
Confidence 589999999999999999998553 2233334444333444555544 4679999998643322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++++|+|...+.+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 66 ------------------------RDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred ------------------------HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 22456789999999997654332221 22232322 2246899999999999753
Q ss_pred hhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ...+ ...+.+++++||++|.|+.+++.++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 122 RVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred cEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2211 1112 23456899999999999999999998754
No 89
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.67 E-value=5.1e-16 Score=138.73 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=98.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+++|.+..... ...+..........+..++ ..+.+|||||.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~---------------- 64 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTS-AFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR---------------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 589999999999999999999875311 1112111122222233333 458999999975422
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .++..+.... .+.|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~ 122 (165)
T cd01865 65 ----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDER 122 (165)
T ss_pred ----------------------HHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCccc
Confidence 1223557889999999998654322211 1223333322 367899999999997543
Q ss_pred hh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. .... ....+++++++||++|.|+.++++.+...+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 123 VVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 21 1111 223567899999999999999999987754
No 90
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.67 E-value=4.2e-16 Score=139.33 Aligned_cols=154 Identities=18% Similarity=0.171 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|.+|||||||++++.+.... ....+..+.......+...+. .+.+|||||...+.
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------------- 65 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR--------------- 65 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHH---------------
Confidence 368999999999999999999976532 222233333333334444443 57899999975422
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 66 -----------------------~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 66 -----------------------TITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred -----------------------HHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 2223556789999999998764332221 1222233222 46899999999998654
Q ss_pred hhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ... ....+.+++++||++|.|+++++..+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 123 RVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 3211 111 123466899999999999999999987765
No 91
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.67 E-value=6.9e-16 Score=141.82 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeee---------------cCCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
.++|+++|++|+|||||+++|++....... ...+.+.......+..++..+.+|||||+..+.
T Consensus 2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG-- 79 (194)
T ss_pred ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH--
Confidence 468999999999999999999863111111 123445555445566677889999999986422
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (484)
.....++..+|.+++|+|+..+.......++..+... +.|++
T Consensus 80 ------------------------------------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~--~~p~i 121 (194)
T cd01891 80 ------------------------------------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPI 121 (194)
T ss_pred ------------------------------------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHc--CCCEE
Confidence 2334567889999999998775433333334444333 78999
Q ss_pred EEecccCCCchhhh----hhHHHH--------hcCCCceeeecccCCCCchhhH
Q 011492 308 LAVNKCESPRKGIM----QVSEFW--------SLGFSPLPISAISGTGTGELLD 349 (484)
Q Consensus 308 lV~NK~Dl~~~~~~----~~~~~~--------~~~~~~i~vSa~~g~gi~~L~~ 349 (484)
+|+||+|+...... ....+. ..+++++++||++|.|+.++..
T Consensus 122 iv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~~ 175 (194)
T cd01891 122 VVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASLNLED 175 (194)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccccccc
Confidence 99999999643221 111221 1256889999999999866543
No 92
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.67 E-value=5.3e-16 Score=141.48 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...||+++|..|||||||+.++.+.... ....+..+.......+.+++ ..+.+|||+|...+..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~------------- 70 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTE-SPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCT------------- 70 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHH-------------
Confidence 3589999999999999999999975421 11112222333334445555 4578999999864322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
....++..+|++|+|+|.+.+.+.... .++..+.....+.|++||.||+|+...
T Consensus 71 -------------------------l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~ 125 (189)
T cd04121 71 -------------------------IFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFK 125 (189)
T ss_pred -------------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhc
Confidence 223556789999999998876544433 234444444468899999999998643
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... +...+ ...+++++++||++|.|+++++..+.+.+.
T Consensus 126 ~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~ 167 (189)
T cd04121 126 RQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIVL 167 (189)
T ss_pred cCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 211 11122 235678999999999999999999987654
No 93
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=3.4e-16 Score=140.52 Aligned_cols=151 Identities=22% Similarity=0.246 Sum_probs=99.1
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
||+++|.+|||||||+++|.+.... . ...|.......+.+.+..+.+|||||......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~------------------ 58 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRP------------------ 58 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcch------------------
Confidence 6899999999999999999986421 1 22233333344566778899999999854321
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc--ccHHHHHHHHh-hcCCCeEEEEecccCCCchhhh
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~--~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
.....+..+|++++|+|.+.+.+. ...++...+.. ...+.|+++|+||+|+......
T Consensus 59 --------------------~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~ 118 (169)
T cd04158 59 --------------------LWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSV 118 (169)
T ss_pred --------------------HHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCH
Confidence 223456789999999998764322 11222222222 1235799999999998653211
Q ss_pred h-hHHHHh---c----CCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 322 Q-VSEFWS---L----GFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 322 ~-~~~~~~---~----~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. ...+.. . .+.++++||++|.|+.+++.++.+.+..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 119 EEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhh
Confidence 1 112211 1 1246789999999999999999876543
No 94
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.67 E-value=8.4e-16 Score=144.87 Aligned_cols=157 Identities=23% Similarity=0.235 Sum_probs=110.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|.+|+|||||+|+|+|.. ..+..++++|.....+.+.+.+..+.+|||||+.........
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~-------------- 66 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKG-------------- 66 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchh--------------
Confidence 78999999999999999999875 446778888988888888889999999999998653321111
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC-------------------------------------
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT------------------------------------- 287 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~------------------------------------- 287 (484)
+.++....+.++|++++|+|+..+..
T Consensus 67 -----------------~~~~~l~~~~~ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~ 129 (233)
T cd01896 67 -----------------RGRQVIAVARTADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITS 129 (233)
T ss_pred -----------------HHHHHHHhhccCCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEec
Confidence 11344566788888888888654321
Q ss_pred -----cccHHHH-HHHHhh-------------------------cCCCeEEEEecccCCCchhhhhhHHHHhcCCCceee
Q 011492 288 -----AADEEIA-DWLRKN-------------------------YMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPI 336 (484)
Q Consensus 288 -----~~~~~~~-~~l~~~-------------------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~v 336 (484)
..+.+.. ..|.++ ..-.|+++|+||+|+........ .....+++++
T Consensus 130 ~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~---~~~~~~~~~~ 206 (233)
T cd01896 130 TVPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDL---LARQPNSVVI 206 (233)
T ss_pred cCCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHH---HhcCCCEEEE
Confidence 1111211 122221 12258899999999976543331 2234568899
Q ss_pred ecccCCCCchhhHHHHHHhh
Q 011492 337 SAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 337 Sa~~g~gi~~L~~~i~~~l~ 356 (484)
||+++.|++++++.+.+.+.
T Consensus 207 SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 207 SAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCCCCHHHHHHHHHHHhC
Confidence 99999999999999987653
No 95
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.67 E-value=6.2e-16 Score=137.10 Aligned_cols=142 Identities=18% Similarity=0.226 Sum_probs=95.6
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|++|+|||||+|+|.|.... ...+ ....+.+. .+|||||.......
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~-----~~v~~~~~--~~iDtpG~~~~~~~----------------- 53 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKT-----QAVEFNDK--GDIDTPGEYFSHPR----------------- 53 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----Cccc-----eEEEECCC--CcccCCccccCCHH-----------------
Confidence 7999999999999999999986421 1111 12223222 37999997532210
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS 324 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~ 324 (484)
+.+.....+..+|++++|+|+..+......++. ....++|+++++||+|+.........
T Consensus 54 -----------------~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~----~~~~~~~ii~v~nK~Dl~~~~~~~~~ 112 (158)
T PRK15467 54 -----------------WYHALITTLQDVDMLIYVHGANDPESRLPAGLL----DIGVSKRQIAVISKTDMPDADVAATR 112 (158)
T ss_pred -----------------HHHHHHHHHhcCCEEEEEEeCCCcccccCHHHH----hccCCCCeEEEEEccccCcccHHHHH
Confidence 113334557889999999999876554443322 22236799999999998654332222
Q ss_pred HH-HhcC--CCceeeecccCCCCchhhHHHHHHhh
Q 011492 325 EF-WSLG--FSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 325 ~~-~~~~--~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.+ ...+ .+++++||++|.|++++++.+.+.+.
T Consensus 113 ~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 113 KLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred HHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 22 2334 38999999999999999999987664
No 96
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.67 E-value=6.1e-16 Score=137.62 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+... ...+.+++.......+.+++. .+.+|||||...+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAM-------------- 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchH--------------
Confidence 5899999999999999999987642 222333333333444555554 4678999998653322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
...++..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 66 ------------------------~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 66 ------------------------RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDE 121 (163)
T ss_pred ------------------------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 12446789999999998764433222 223333322 246899999999998653
Q ss_pred hhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 319 ~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.... ...+ ...+.+++++||++|.|+.+++.++.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 122 RVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred ceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHh
Confidence 2111 1111 2234678999999999999999998764
No 97
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.67 E-value=4.8e-16 Score=141.90 Aligned_cols=154 Identities=16% Similarity=0.084 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-C--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+||+++|.+|+|||||++++.+.... ..+..+........+... + ..+.+|||||...+..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~--~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~-------------- 64 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP--EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR-------------- 64 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC--CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHH--------------
Confidence 48999999999999999999976531 222222222222233333 2 3578999999754221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH--HHHHHHhhcCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+..+|++++|+|...+.+..... +...+.....+.|+++|+||+|+...
T Consensus 65 ------------------------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 120 (187)
T cd04132 65 ------------------------LRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKD 120 (187)
T ss_pred ------------------------HHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhC
Confidence 1123467899999999987654433321 22233333357899999999998653
Q ss_pred h-------hhhhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011492 319 G-------IMQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~-------~~~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. ......+ ...+. +++++||++|.|+.+++..+...+..
T Consensus 121 ~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 121 KNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred ccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 2 1111112 23455 78999999999999999998877653
No 98
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.67 E-value=5.9e-16 Score=141.88 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=101.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+.........+..........+.+++ ..+.+|||||...+.
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 64 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFR---------------- 64 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHH----------------
Confidence 47999999999999999999876532111122222222222344444 357899999964321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++|+|+|+..+.+.... .++..+.... .+.|+++|+||+|+....
T Consensus 65 ----------------------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~ 122 (191)
T cd04112 65 ----------------------SVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGER 122 (191)
T ss_pred ----------------------HhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhcc
Confidence 1223456789999999998764332211 2233333332 367999999999986422
Q ss_pred hh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.. .... ....+.+++++||++|.|+++++..+.+.+...
T Consensus 123 ~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 123 VVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred ccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 11 1111 123456899999999999999999998877543
No 99
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=1.5e-15 Score=135.26 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=101.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|++|+|||||++++.+... .....+..+.......+.+.+ ..+.+|||||...+.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---------------- 63 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF-SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR---------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH----------------
Confidence 4899999999999999999998753 112222223233333444555 357899999964321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|..++.+..... ++..+.... .+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~ 121 (164)
T smart00175 64 ----------------------SITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQR 121 (164)
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccccc
Confidence 22335567899999999987654432211 222222222 468999999999987532
Q ss_pred h---hhhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
. .....+ ...+++++++|+.++.|++++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 122 QVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 1 111112 234678999999999999999999987653
No 100
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.66 E-value=7e-16 Score=139.32 Aligned_cols=150 Identities=13% Similarity=0.105 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++..... ...+.++........+.+++ ..+.+|||+|...+...+.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------ 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRP------------ 67 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhh------------
Confidence 5899999999999999999997643 22333333222222345555 4578999999875433221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++|+|+|...+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (175)
T cd01874 68 --------------------------LSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDP 121 (175)
T ss_pred --------------------------hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhCh
Confidence 345789999999998776544333 2444454444578999999999986431
Q ss_pred hh------------h---hHHHH-hcC-CCceeeecccCCCCchhhHHHHH
Q 011492 320 IM------------Q---VSEFW-SLG-FSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~~------------~---~~~~~-~~~-~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.. . ...+. ..+ ..++++||++|.|+.++++.+..
T Consensus 122 ~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 122 STIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred hhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 10 0 01111 233 47899999999999999988765
No 101
>PTZ00369 Ras-like protein; Provisional
Probab=99.66 E-value=1.2e-15 Score=139.63 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=101.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|||||||++++.+.... ..+.++........+.+++. .+.+|||||...+...
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l------------ 69 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFI--DEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAM------------ 69 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC--cCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhh------------
Confidence 3579999999999999999999976432 12222222222333344443 4778999998654322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~ 316 (484)
...++..+|++++|+|..++.+.... .+...+.... .+.|+++|+||+|+.
T Consensus 70 --------------------------~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~ 123 (189)
T PTZ00369 70 --------------------------RDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD 123 (189)
T ss_pred --------------------------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 12456789999999998765432222 2223333221 367999999999986
Q ss_pred chhhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 317 RKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 317 ~~~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
...... ...+ ...+.+++++||++|.|+.+++.++.+.+.+.
T Consensus 124 ~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~~~ 169 (189)
T PTZ00369 124 SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKY 169 (189)
T ss_pred cccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 432111 1112 23456889999999999999999998766543
No 102
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.66 E-value=5.8e-16 Score=138.39 Aligned_cols=151 Identities=19% Similarity=0.165 Sum_probs=96.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++++.... ..+..+........... ....+.+|||||...+..
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFR--ESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA--------------- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--CCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchH---------------
Confidence 58999999999999999999976531 11111111111112222 234578999999865332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh----cCCCeEEEEecccCCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN----YMDKFIILAVNKCESP 316 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~----~~~~p~ilV~NK~Dl~ 316 (484)
.....+..+|.+++|+|...+.+... ..++..+... ..+.|+++|+||+|+.
T Consensus 65 -----------------------~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 65 -----------------------MQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred -----------------------HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc
Confidence 11244567899999999876544322 2233334332 1468999999999996
Q ss_pred chhhhhh---H-HHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 317 RKGIMQV---S-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 317 ~~~~~~~---~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
....... . .....+.+++++||++|.|+++++++|.++
T Consensus 122 ~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 122 HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence 5221111 1 122345678999999999999999998753
No 103
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.66 E-value=9.4e-16 Score=136.89 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=98.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+++|++.... ....+....+.....+.+.+ ..+.+|||||...+.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------- 63 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFV-SKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL---------------- 63 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH----------------
Confidence 48999999999999999999987532 12222222222222334433 457899999975322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc------CCCeEEEEecccC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY------MDKFIILAVNKCE 314 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~------~~~p~ilV~NK~D 314 (484)
......+..+|++|+|+|.+.+.+.... .+...+.... .+.|+++|+||+|
T Consensus 64 ----------------------~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 121 (168)
T cd04119 64 ----------------------EVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKID 121 (168)
T ss_pred ----------------------HHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchh
Confidence 1122446789999999998765332211 2233333322 3589999999999
Q ss_pred CCchhh---hhhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 315 SPRKGI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 315 l~~~~~---~~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
+..... ..... ....+++++++||++|.|+.++++.+.+.+
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 122 LTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred cccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 873211 11111 223457889999999999999999987654
No 104
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.66 E-value=8.7e-16 Score=137.09 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=100.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|||||||+++|.+.... ....+..+.......+...+. .+.+|||||.....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~--------------- 66 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR--------------- 66 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH---------------
Confidence 468999999999999999999977532 222333333333344455553 57899999975322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
......+..++.+++|+|...+.+.... .++..+.+.. .+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 67 -----------------------AITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred -----------------------HHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 1222456789999999998754433221 1223233322 25899999999998653
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... ....+ ...+.+++++||++|.|++++++.+...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 124 RAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 211 11112 22456789999999999999999987643
No 105
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=8.3e-16 Score=137.32 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=99.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.+||+++|.+|+|||||++++.+...... ..+..........+.+++ ..+.+|||||...+.
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~--------------- 66 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSER-QGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFR--------------- 66 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCccc-CCCccceEEEEEEEEECCEEEEEEEEECCChHHHH---------------
Confidence 57999999999999999999986543211 111111223333445555 367999999975321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh-cCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 67 -----------------------TITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 223355678999999999877543322 1233333332 246889999999998754
Q ss_pred hhh---hhHHHH-hcC-CCceeeecccCCCCchhhHHHHHH
Q 011492 319 GIM---QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 319 ~~~---~~~~~~-~~~-~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ....+. ..+ ..++++||++|.|++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 124 REVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred cccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 221 111222 223 357999999999999999988753
No 106
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.66 E-value=9.5e-16 Score=143.23 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=101.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC---ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+||+++|.+|||||||+++|.+... .....+..+.+.....+.+.+ ..+.+|||||...+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~--------------- 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG--------------- 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH---------------
Confidence 4899999999999999999997642 112223333344444455533 468899999964322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc----CCCeEEEEecccCC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY----MDKFIILAVNKCES 315 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~----~~~p~ilV~NK~Dl 315 (484)
......+..+|++|+|+|.+.+.+.... .+...+.+.. .+.|+++|+||+|+
T Consensus 65 -----------------------~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL 121 (215)
T cd04109 65 -----------------------KMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDL 121 (215)
T ss_pred -----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccc
Confidence 1222456789999999998765443322 2333344332 23578999999999
Q ss_pred Cchhhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 316 PRKGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... ...+ ...+++++++||++|.|++++++.+...+..
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 122 EHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred ccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6432111 1111 2245678999999999999999999887653
No 107
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.66 E-value=8.3e-16 Score=165.69 Aligned_cols=153 Identities=21% Similarity=0.262 Sum_probs=113.8
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..+.+.|+++|++++|||||+++|++... .....++.|.+.....+.+.+..+++|||||+..+..
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v-~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~------------- 352 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNV-AAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTA------------- 352 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCc-cccccCceeeeccEEEEEECCEEEEEEECCCCccchh-------------
Confidence 35689999999999999999999987653 2344566777766666777788999999999875432
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....+..+|++|+|+|+.++......+.+..+... +.|+++|+||+|+....
T Consensus 353 -------------------------m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~--~vPiIVviNKiDl~~a~ 405 (787)
T PRK05306 353 -------------------------MRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA--GVPIIVAINKIDKPGAN 405 (787)
T ss_pred -------------------------HHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc--CCcEEEEEECccccccC
Confidence 122456779999999999887666666666665554 89999999999996532
Q ss_pred hh---hhHHH-------HhcCCCceeeecccCCCCchhhHHHHH
Q 011492 320 IM---QVSEF-------WSLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~~---~~~~~-------~~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.. ..+.. +...++++++||++|.|+++|++.+..
T Consensus 406 ~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 406 PDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhh
Confidence 11 11110 111357899999999999999998864
No 108
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=1.1e-15 Score=136.33 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+.... ....+++.........+++ ..+.+|||||...+..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------------- 63 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFV--DDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSA--------------- 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCcccchH---------------
Confidence 38999999999999999999976532 2222333333333344444 3578999999764321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+..+|.+++|+|+..+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 64 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 64 -----------------------MRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESE 120 (164)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 122456779999999998764332221 122223221 136799999999998753
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... .... ....+.+++++||++|.|++++++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 121 RVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred ceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 211 1111 1234568899999999999999999987653
No 109
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.2e-15 Score=140.96 Aligned_cols=156 Identities=18% Similarity=0.153 Sum_probs=100.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-C--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+||+++|.+|||||||++++++.... ....+....+.....+.+. + ..+.+|||||...+..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~-~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~-------------- 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFS-QHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG-------------- 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhh--------------
Confidence 48999999999999999999976421 1112222222223334444 3 3578999999854322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh-----cCCCeEEEEecccC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-----YMDKFIILAVNKCE 314 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~-----~~~~p~ilV~NK~D 314 (484)
....++.++|++|+|+|.+.+.+..... +...+... ..+.|+++|+||+|
T Consensus 66 ------------------------~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~D 121 (201)
T cd04107 66 ------------------------MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCD 121 (201)
T ss_pred ------------------------hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCC
Confidence 2235568899999999987654433221 22223221 14679999999999
Q ss_pred CCchh--hh-hhHHH-HhcC-CCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 315 SPRKG--IM-QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 315 l~~~~--~~-~~~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+.... .. ....+ ...+ ..++++||++|.|+++++.++.+.+...
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~ 170 (201)
T cd04107 122 LKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNILAN 170 (201)
T ss_pred cccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 96321 11 11122 2234 4789999999999999999998876543
No 110
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.66 E-value=1.1e-15 Score=136.19 Aligned_cols=152 Identities=21% Similarity=0.163 Sum_probs=99.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.+|+++|.+|+|||||++++.+.... ....++........+.+++. .+.+|||||...+....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMR------------- 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchH-------------
Confidence 58999999999999999998876432 22222222333334455554 46789999986543322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
..++.++|++++|+|..++.+..+. .+...+... ..+.|+++|+||+|+...
T Consensus 67 -------------------------~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 67 -------------------------DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESE 121 (163)
T ss_pred -------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc
Confidence 2346789999999998765433222 233333332 147899999999998653
Q ss_pred hhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ...+ ...+.+++++||++|.|+.+++.++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 122 REVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred CccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence 2211 1111 22356789999999999999999887643
No 111
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.65 E-value=7.1e-16 Score=137.27 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=98.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.||+++|++|+|||||+|+|++.+... .....+.+. ....+.+++ ..+.+|||||.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~v~~~~~~~~~~i~D~~G~~~~~--------------- 64 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAF--LTQTVNLDDTTVKFEIWDTAGQERYR--------------- 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE--EEEEEEECCEEEEEEEEeCCchHHHH---------------
Confidence 589999999999999999999876422 222222211 122233333 457899999964321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 121 (163)
T cd01860 65 -----------------------SLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK 121 (163)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 112245677999999999875432221 22333333332 46789999999998742
Q ss_pred hh---hhhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GI---MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~---~~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. ..... ....+.+++++||++|.|+.++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 122 RQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 21 11111 223457889999999999999999987754
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.65 E-value=4.1e-16 Score=138.60 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=94.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcc--eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
+|+++|.+|||||||+++|.+... ....++.+.+ ...+...+..+.+|||||...+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~---------------- 60 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYRG---------------- 60 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc----eEEEEECCEEEEEEECCCCHhhHH----------------
Confidence 589999999999999999998642 1222233322 223345677899999999864221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhh---cCCCeEEEEecccCCCc
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN---YMDKFIILAVNKCESPR 317 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~---~~~~p~ilV~NK~Dl~~ 317 (484)
....++..+|++++|+|++.+..... .++..++... ..+.|+++|+||+|+..
T Consensus 61 ----------------------~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 118 (162)
T cd04157 61 ----------------------LWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPD 118 (162)
T ss_pred ----------------------HHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccC
Confidence 22245678999999999876543211 1222222211 13689999999999875
Q ss_pred hhhh-hhHHHHh------cCCCceeeecccCCCCchhhHHHHH
Q 011492 318 KGIM-QVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 318 ~~~~-~~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.... ....... ..+.++++||++|.|+++++++|.+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 119 ALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 3211 1111111 1234789999999999999998853
No 113
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.65 E-value=6.9e-16 Score=129.48 Aligned_cols=116 Identities=41% Similarity=0.597 Sum_probs=89.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|.+|+|||||+|+|++.+...++..+++|.....+.+.+.+..+.++||||+.........
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~-------------- 66 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND-------------- 66 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH--------------
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH--------------
Confidence 689999999999999999999777788899999999988788888999999999998653211100
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecc
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 312 (484)
.. ....+...+..+|++++|+|+..+....+..++++++ .+.|+++|+||
T Consensus 67 --------------~~-~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 67 --------------GK-EIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp --------------HH-HHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred --------------HH-HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 00 1234556668899999999977644444556667775 38999999998
No 114
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.65 E-value=7.8e-16 Score=140.96 Aligned_cols=153 Identities=17% Similarity=0.168 Sum_probs=99.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
+|+++|.+|||||||+++|.+... ...+.+++.........+.+. .+.+|||||...+..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------------- 62 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF--VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTA---------------- 62 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHH----------------
Confidence 589999999999999999986543 222333333233333445554 378899999754221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh----cCCCeEEEEecccCCCc
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCESPR 317 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~Dl~~ 317 (484)
....++..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 63 ----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 63 ----------------------LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred ----------------------HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 122456789999999998764433221 223333322 13689999999999864
Q ss_pred hhhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ...+ ...+.+++++||++|.|+++++..+.+.+..
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 121 EREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred cCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 22211 1111 2345678999999999999999999876653
No 115
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.65 E-value=9.5e-16 Score=161.57 Aligned_cols=152 Identities=21% Similarity=0.277 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.+.++|+++|++|+|||||+++|++.... ....++.|.+.....+.+.+. .+++|||||+..+..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~------------- 150 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS------------- 150 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhh-------------
Confidence 35789999999999999999999986532 334566777766666666554 899999999975432
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....+..+|++++|+|+..+......+.+..+... +.|+++++||+|+....
T Consensus 151 -------------------------~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~--~vPiIVviNKiDl~~~~ 203 (587)
T TIGR00487 151 -------------------------MRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA--NVPIIVAINKIDKPEAN 203 (587)
T ss_pred -------------------------HHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc--CCCEEEEEECcccccCC
Confidence 112456789999999999877666666665555443 88999999999986422
Q ss_pred hhhhHHHH-h---------cCCCceeeecccCCCCchhhHHHHH
Q 011492 320 IMQVSEFW-S---------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~~~~~~~~-~---------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
........ . ...+++++||++|.|++++++.+..
T Consensus 204 ~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 204 PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 11111111 1 1246899999999999999998854
No 116
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.65 E-value=1.6e-15 Score=139.26 Aligned_cols=154 Identities=18% Similarity=0.145 Sum_probs=100.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceee-eeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD-RMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+||+++|.+|||||||++++++.... ...+.++... .....+.+++.. +.+|||||........
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~------------ 67 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFL-VGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMS------------ 67 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcC-CcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhh------------
Confidence 48999999999999999999976532 2223222222 222334555543 5699999975432221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
...+..+|++++|+|...+.+... ..++..+.....+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 121 (193)
T cd04118 68 --------------------------RIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121 (193)
T ss_pred --------------------------HhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccc
Confidence 134567999999999876533322 12334444433468999999999986431
Q ss_pred ----hh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 ----IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ----~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.. ....+ ...+.+++++||++|.|++++++.+.+.+.
T Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDFV 166 (193)
T ss_pred cccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 10 11111 223567899999999999999999987764
No 117
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.65 E-value=1.1e-15 Score=140.63 Aligned_cols=167 Identities=19% Similarity=0.251 Sum_probs=114.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeec-CCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD-EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
++|+|+|.+|+|||||+|+|+|........ .++.|..+......+.+..+.++||||+.+.........
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~---------- 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS---------- 70 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH----------
Confidence 479999999999999999999987543332 457888888888888999999999999986543221111
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC---CeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD---KFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~---~p~ilV~NK~Dl~~~~ 319 (484)
..+.+.+......+|++++|+++.. ++..+...++.+.+.+.. .++++|+|++|.....
T Consensus 71 -----------------~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~ 132 (196)
T cd01852 71 -----------------KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred -----------------HHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCC
Confidence 1122333334466899999999876 777777788888775432 6789999999976532
Q ss_pred hhh---------hHHHH-hcCCCceee-----ecccCCCCchhhHHHHHHhhhc
Q 011492 320 IMQ---------VSEFW-SLGFSPLPI-----SAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 320 ~~~---------~~~~~-~~~~~~i~v-----Sa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... ..... ..+..++.+ ++..+.++.+|++.+.+.+.++
T Consensus 133 ~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 133 TLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred cHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 110 11111 112222222 3566788899999998888753
No 118
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.65 E-value=1e-15 Score=137.10 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=100.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|.+|+|||||++++.+.... ....+..........+.+.+ ..+.+|||||.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~--------------- 66 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFN-PSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR--------------- 66 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCC-cccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH---------------
Confidence 479999999999999999999976521 11122222222333344444 357899999975422
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 67 -----------------------~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 67 -----------------------TITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEK 123 (167)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 1223556789999999998765433221 122223222 136799999999999753
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... .... ....+.+++++||++|.|+++++..+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 124 RVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 211 1111 223456889999999999999999988765
No 119
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.65 E-value=1.2e-15 Score=137.27 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=103.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|||||||++++.+.... .....+........+.+++. .+.+|||||...+..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------------- 65 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFP--DYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA-------------- 65 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCC--CCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHH--------------
Confidence 368999999999999999999876532 12222222222333455553 478999999865322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh--cCCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
....++..+|++++|+|..++.+..... +...+.+. ..+.|+++|+||+|+..
T Consensus 66 ------------------------l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 66 ------------------------MRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred ------------------------HhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 1224567899999999988765554432 33334432 24689999999999864
Q ss_pred hhhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... ...+ ...+++++++||++|.|++++++++...+.
T Consensus 122 ~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 164 (172)
T cd04141 122 QRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREIR 164 (172)
T ss_pred cCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 32111 1112 234678999999999999999999987654
No 120
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.65 E-value=1.1e-15 Score=139.84 Aligned_cols=153 Identities=16% Similarity=0.138 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+..... .+..+........+..++ ..+.+|||+|...+.....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~--~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~------------ 66 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQ--VYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRS------------ 66 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC--ccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccc------------
Confidence 479999999999999999999765321 111111111222233444 4589999999865433221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++++|+|...+.+.... .++..+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~ 120 (189)
T cd04134 67 --------------------------LSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREAR 120 (189)
T ss_pred --------------------------ccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCh
Confidence 235678999999998776444332 2444455544678999999999986532
Q ss_pred hhh---------------hHHHH-hcC-CCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQ---------------VSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~---------------~~~~~-~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ...+. ..+ ++++++||++|.|+++++.++.+.+.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~ 174 (189)
T cd04134 121 NERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVAL 174 (189)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence 110 11111 223 46899999999999999999987654
No 121
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.65 E-value=1.4e-15 Score=140.43 Aligned_cols=157 Identities=18% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||++++.+.... ....+..........+.+.+ ..+.+|||||...+.
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~-------------- 69 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR-------------- 69 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH--------------
Confidence 3689999999999999999999976531 11112111122222333444 357899999975422
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..++++++|+|+..+.+.... .++..+.......|+++|+||+|+...
T Consensus 70 ------------------------~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 70 ------------------------TITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPER 125 (199)
T ss_pred ------------------------HHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 1223556789999999998765433222 233334444456899999999998753
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ....+ ...+.+++++||++|.|+.++++++...+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 126 KVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred cccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence 221 11122 2345788999999999999999999887643
No 122
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.65 E-value=9.5e-16 Score=138.94 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=98.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC------------CceeeEeeccccccccCCCch
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQPN 230 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~i~liDtpG~~~~~~~~~~ 230 (484)
.+||+++|.+|||||||++++.+.... ....+....+.....+.+. ...+.+|||||...+.
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----- 77 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFN-PKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR----- 77 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHH-----
Confidence 579999999999999999999876421 1112222222222222222 2458899999975321
Q ss_pred hhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEE
Q 011492 231 IMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFII 307 (484)
Q Consensus 231 ~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~i 307 (484)
......+..+|++++|+|...+.+..+. .++..+... ..+.|++
T Consensus 78 ---------------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii 124 (180)
T cd04127 78 ---------------------------------SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIV 124 (180)
T ss_pred ---------------------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 2233566789999999998764433322 122223322 1367899
Q ss_pred EEecccCCCchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 308 LAVNKCESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 308 lV~NK~Dl~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
+|+||+|+...... ....+ ...+++++++||++|.|++++++.+.+.+
T Consensus 125 iv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 125 LCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred EEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999998653211 11112 23466889999999999999999997754
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.65 E-value=6e-16 Score=140.96 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|.+|||||||++++.+....... .|.......+.+++.++.+|||||.....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~G~~~~~----------------- 75 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQ----PTQHPTSEELAIGNIKFTTFDLGGHQQAR----------------- 75 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccccceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 589999999999999999999986532221 23333344556677889999999985421
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|.+++|+|++.+.... ...+...+.. ...+.|+++|+||+|+....
T Consensus 76 ---------------------~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~ 134 (184)
T smart00178 76 ---------------------RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAA 134 (184)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCC
Confidence 12235668899999999987642221 1122222221 12478999999999986421
Q ss_pred ----hhhhHHHHh----------cCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 ----IMQVSEFWS----------LGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ----~~~~~~~~~----------~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
......... ....++++||++|.|+++++++|.+.
T Consensus 135 ~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 135 SEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred CHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 111111111 12247899999999999999999653
No 124
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.65 E-value=6.7e-16 Score=139.31 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=98.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|++|+|||||+++|.+....... .|.........+.+..+.+|||||...+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 73 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTS----PTIGSNVEEIVYKNIRFLMWDIGGQESLR----------------- 73 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcC----CccccceEEEEECCeEEEEEECCCCHHHH-----------------
Confidence 578999999999999999999876533222 23333334556677889999999985422
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHhh-cCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|++.+.... ..++...+... ..+.|+++++||+|+....
T Consensus 74 ---------------------~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~ 132 (174)
T cd04153 74 ---------------------SSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM 132 (174)
T ss_pred ---------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC
Confidence 22234567899999999987653221 11222233221 2368999999999986521
Q ss_pred hhh-hHHHH------hcCCCceeeecccCCCCchhhHHHHH
Q 011492 320 IMQ-VSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~~~-~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
... ..... ..+++++++||++|.|+++++++|.+
T Consensus 133 ~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 133 TPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence 111 11111 12346789999999999999998853
No 125
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.65 E-value=2.8e-15 Score=131.83 Aligned_cols=154 Identities=29% Similarity=0.395 Sum_probs=110.7
Q ss_pred EEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhhcccCCC
Q 011492 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGI 246 (484)
Q Consensus 168 l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~ 246 (484)
++|++|+|||||+|+|++.........++++........... +..+.+|||||+..........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~--------------- 65 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGRER--------------- 65 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhH---------------
Confidence 579999999999999998765556666777776666555554 6789999999987654433211
Q ss_pred chhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH--
Q 011492 247 PLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-- 324 (484)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-- 324 (484)
.......+..+|.+++|+|+..+.......+...... .+.|+++|+||+|+.........
T Consensus 66 ----------------~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 66 ----------------EELARRVLERADLILFVVDADLRADEEEEKLLELLRE--RGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred ----------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCeEEEEEEccccCChhhHHHHHH
Confidence 1344466788999999999887666555542333333 38999999999999875433221
Q ss_pred -----HHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 325 -----EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 325 -----~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.......+++++||.++.|+.+++..+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 128 LRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 112235578999999999999999988653
No 126
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.65 E-value=2.4e-15 Score=139.06 Aligned_cols=154 Identities=18% Similarity=0.118 Sum_probs=98.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcce--eeecCCCceeeeeEEEEEeC---------------------------C----
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFWG---------------------------E---- 210 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~~---------------------------~---- 210 (484)
.+|+++|++|+|||||+.+|.+.... ......+.+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 36899999999999999999876210 00011111211111111111 2
Q ss_pred --ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC-CC
Q 011492 211 --HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LT 287 (484)
Q Consensus 211 --~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~-~~ 287 (484)
..+.+|||||+..+ ...+...+..+|++++|+|+..+ ..
T Consensus 81 ~~~~i~~iDtPG~~~~--------------------------------------~~~~~~~~~~~D~~llVvd~~~~~~~ 122 (203)
T cd01888 81 LVRHVSFVDCPGHEIL--------------------------------------MATMLSGAAVMDGALLLIAANEPCPQ 122 (203)
T ss_pred cccEEEEEECCChHHH--------------------------------------HHHHHHhhhcCCEEEEEEECCCCCCC
Confidence 67899999997431 13455677889999999999874 33
Q ss_pred cccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-h---h-HHHHh----cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-Q---V-SEFWS----LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~---~-~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
......+..+... ...|+++|+||+|+...... . . ..+.. .+++++++||++|.|+++|++.+.+.++
T Consensus 123 ~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 123 PQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred cchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 3334444444332 23478999999999763221 1 1 11111 2457899999999999999999987664
No 127
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.65 E-value=1.9e-15 Score=135.65 Aligned_cols=154 Identities=15% Similarity=0.121 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|++|||||||+++|.+.... ....+..........+.+.+. .+.+|||||...+.
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------------- 63 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ---------------- 63 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH----------------
Confidence 48999999999999999999977532 111122222223333445443 46799999975322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-----CCCeEEEEecccCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCES 315 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ilV~NK~Dl 315 (484)
......+..+|++|+|+|+..+.+.... .+...+.... .+.|+++|+||+|+
T Consensus 64 ----------------------~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 121 (172)
T cd01862 64 ----------------------SLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDL 121 (172)
T ss_pred ----------------------hHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccc
Confidence 1223556789999999998765432221 1222222222 26899999999999
Q ss_pred Cchhh--hhh-HHH-HhcC-CCceeeecccCCCCchhhHHHHHHhh
Q 011492 316 PRKGI--MQV-SEF-WSLG-FSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 316 ~~~~~--~~~-~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... ... ..+ ...+ .+++++||++|.|+.++++.+.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 122 EEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred ccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 73211 111 122 2233 57899999999999999999887654
No 128
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=1e-15 Score=133.44 Aligned_cols=158 Identities=19% Similarity=0.167 Sum_probs=109.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+|+|..+||||||+-++...+... ...+.+-.......+.+.+ .++.+|||+|.+++....+.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e-~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapM---------- 73 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHE-NIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPM---------- 73 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCcccc-ccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccc----------
Confidence 5799999999999999999987654221 1122222233334444545 56789999999987776653
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
++++++++|+|+|+++..+.... .++..|.+.. ++.-+.||.||+|+...
T Consensus 74 ----------------------------YyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~ 125 (200)
T KOG0092|consen 74 ----------------------------YYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLER 125 (200)
T ss_pred ----------------------------eecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhc
Confidence 45789999999998765444322 2344444432 34556779999999874
Q ss_pred hhhhh----HHHHhcCCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 319 GIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 319 ~~~~~----~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
..... ......+..++++||++|.|+++++..|.+.++...
T Consensus 126 R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~ 170 (200)
T KOG0092|consen 126 REVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSD 170 (200)
T ss_pred ccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcc
Confidence 33222 123446788999999999999999999999887544
No 129
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.65 E-value=1.7e-15 Score=134.28 Aligned_cols=147 Identities=24% Similarity=0.301 Sum_probs=95.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
||+++|++|+|||||+++|....... ..+ |.......+...+..+.+|||||...+.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------- 57 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--TIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR------------------- 57 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--cCC--ccCcCeEEEEECCEEEEEEECCCCHHHH-------------------
Confidence 68999999999999999997654322 112 2222223445567789999999986422
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchhh-
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGI- 320 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~- 320 (484)
.....++..+|++++|+|+..+.... ...+...+.. ...++|+++|+||+|+.+...
T Consensus 58 -------------------~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~ 118 (158)
T cd04151 58 -------------------PYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSE 118 (158)
T ss_pred -------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCH
Confidence 22335667899999999987642211 1222222322 224789999999999865321
Q ss_pred hhhHHHHh------cCCCceeeecccCCCCchhhHHHHH
Q 011492 321 MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 321 ~~~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
........ .+++++++||++|.|++++++++.+
T Consensus 119 ~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 119 AEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 11111111 1236899999999999999998853
No 130
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.65 E-value=1.5e-15 Score=141.10 Aligned_cols=144 Identities=26% Similarity=0.335 Sum_probs=99.4
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeee------------------------------cCCCceeeeeEEEEEeCCceee
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVV------------------------------DEPGVTRDRMYGRSFWGEHEFM 214 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~------------------------------~~~~~t~~~~~~~~~~~~~~i~ 214 (484)
||+++|++|+|||||+++|++....+.. ...++|.+.....+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 6899999999999999999765322221 1256777777777788889999
Q ss_pred EeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHH
Q 011492 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA 294 (484)
Q Consensus 215 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~ 294 (484)
++||||+..+. ......+..+|++++|+|+..+.........
T Consensus 81 liDTpG~~~~~--------------------------------------~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~ 122 (208)
T cd04166 81 IADTPGHEQYT--------------------------------------RNMVTGASTADLAILLVDARKGVLEQTRRHS 122 (208)
T ss_pred EEECCcHHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCccHhHHHHH
Confidence 99999974311 2233557889999999999887655555555
Q ss_pred HHHHhhcCC-CeEEEEecccCCCchhh------hhhH-HH-HhcC---CCceeeecccCCCCchhh
Q 011492 295 DWLRKNYMD-KFIILAVNKCESPRKGI------MQVS-EF-WSLG---FSPLPISAISGTGTGELL 348 (484)
Q Consensus 295 ~~l~~~~~~-~p~ilV~NK~Dl~~~~~------~~~~-~~-~~~~---~~~i~vSa~~g~gi~~L~ 348 (484)
.++... + .++++|+||+|+..... .... .+ ...+ .+++++||++|.|+.+..
T Consensus 123 ~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~~ 186 (208)
T cd04166 123 YILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSRS 186 (208)
T ss_pred HHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccCC
Confidence 555443 4 45777999999874211 1111 11 1233 358999999999998653
No 131
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=1.2e-15 Score=135.38 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=93.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
+|+++|.+|||||||+++|.+.......++.+ .....+.. ....+.+|||||.....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~l~i~D~~G~~~~~------------------ 58 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVG----FNVEMLQLEKHLSLTVWDVGGQEKMR------------------ 58 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccC----cceEEEEeCCceEEEEEECCCCHhHH------------------
Confidence 58999999999999999999876432222222 22222333 23579999999975321
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
......+..+|++++|+|+..+.+.. ...+...+.. ...+.|+++|+||+|+.....
T Consensus 59 --------------------~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 118 (160)
T cd04156 59 --------------------TVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT 118 (160)
T ss_pred --------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC
Confidence 12234567899999999987654221 1222233322 124789999999999864211
Q ss_pred hhhH-HHH---h----cCCCceeeecccCCCCchhhHHHHH
Q 011492 321 MQVS-EFW---S----LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 321 ~~~~-~~~---~----~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.... ... . .+++++++||++|.|+++++++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 119 AEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 1111 111 1 1235789999999999999998753
No 132
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.65 E-value=7.5e-16 Score=136.84 Aligned_cols=148 Identities=22% Similarity=0.258 Sum_probs=94.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.||+++|.+|||||||++++...... ...| |.......+......+.+|||||...+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~--~~~p--t~g~~~~~~~~~~~~~~l~D~~G~~~~~------------------ 58 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------ 58 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--ccCC--CCCcceEEEEECCEEEEEEECCCCHhHH------------------
Confidence 48999999999999999999654432 2222 2222223445567789999999985421
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.....++..+|++++|+|+....+.. ..++...+.. ...+.|+++|+||+|+.....
T Consensus 59 --------------------~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~ 118 (159)
T cd04150 59 --------------------PLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS 118 (159)
T ss_pred --------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC
Confidence 22335678899999999987643221 1112222222 123589999999999864321
Q ss_pred -hhhHHHHh------cCCCceeeecccCCCCchhhHHHHH
Q 011492 321 -MQVSEFWS------LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 321 -~~~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.+...... ..+.++++||++|.|+++++++|.+
T Consensus 119 ~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 119 AAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 11111111 1224578999999999999998753
No 133
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.65 E-value=1.6e-15 Score=135.18 Aligned_cols=153 Identities=20% Similarity=0.174 Sum_probs=97.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeC---CceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
+||+++|.+|||||||+++|.+........+..++ .......+.+. ...+.+|||||.....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS-------------- 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHH--------------
Confidence 48999999999999999999854211222222222 22222223232 2468999999974321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|.+.+.+.... .++..+.....+.|+++|+||+|+...
T Consensus 67 ------------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 67 ------------------------DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred ------------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 1223456789999999998764332211 223333333246899999999998654
Q ss_pred hhhhh---HHH-HhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 319 GIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 319 ~~~~~---~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
..... ..+ ...+.+++++||+++.|+.++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 123 AEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARA 162 (164)
T ss_pred cCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHH
Confidence 22111 112 2345678999999999999999988764
No 134
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.64 E-value=1.6e-15 Score=136.90 Aligned_cols=150 Identities=15% Similarity=0.112 Sum_probs=97.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.+|+++|.+|||||||+.++.+... ...+..+........+.+++ ..+.+|||||...+....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------------- 66 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR------------- 66 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCC--CCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhh-------------
Confidence 5899999999999999999987542 22222222222222334444 457899999976533222
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
...+..+|++|+|+|...+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 -------------------------~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~ 121 (174)
T cd01871 67 -------------------------PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 121 (174)
T ss_pred -------------------------hhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccCh
Confidence 1346789999999998775444432 2344444444578999999999986421
Q ss_pred h------------hhh---HHH-HhcC-CCceeeecccCCCCchhhHHHHH
Q 011492 320 I------------MQV---SEF-WSLG-FSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~------------~~~---~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
. ... ..+ ...+ .+++++||++|.|++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 122 DTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHH
Confidence 1 000 111 1233 36789999999999999988865
No 135
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.64 E-value=2.2e-15 Score=135.87 Aligned_cols=152 Identities=15% Similarity=0.111 Sum_probs=103.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|+|||||+.++..... ...+..+........+.+++ .++.+|||+|...+.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f--~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~------------ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRP------------ 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC--CCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccch------------
Confidence 5899999999999999999997643 22222222222222344444 4579999999876554332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.++..+|++|+|+|...+.+.... .++..+.....+.|+++|+||+|+.+..
T Consensus 68 --------------------------~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (176)
T cd04133 68 --------------------------LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDK 121 (176)
T ss_pred --------------------------hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccCh
Confidence 356789999999998876665443 3444454444578999999999996532
Q ss_pred h----------h---hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011492 320 I----------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~----------~---~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
. . +...+ ...+. +++++||++|.|+++++..+.+.+
T Consensus 122 ~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 122 QYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred hhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence 1 1 11112 22355 489999999999999999988754
No 136
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.64 E-value=1.3e-15 Score=142.55 Aligned_cols=156 Identities=19% Similarity=0.133 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
....||+++|.+|||||||+++++..... ...++.+.+... ..+... ...+.+|||+|...+....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------- 79 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGLR--------- 79 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEE--EEEEECCeEEEEEEEECCCchhhhhhh---------
Confidence 44689999999999999999998755421 122222222222 122222 3478999999986543222
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCC
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..++..+|++|+|+|...+.+.... .++..+.....+.|+++|+||+|+.
T Consensus 80 -----------------------------~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~ 130 (219)
T PLN03071 80 -----------------------------DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130 (219)
T ss_pred -----------------------------HHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhh
Confidence 1346788999999998765443322 2333444444678999999999986
Q ss_pred chhhh-hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 317 RKGIM-QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~~-~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... ....+ ...+++++++||++|.|+.+++.++.+.+.
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~~ 172 (219)
T PLN03071 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172 (219)
T ss_pred hccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 43211 11122 234567899999999999999999987664
No 137
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.64 E-value=1.6e-15 Score=135.91 Aligned_cols=152 Identities=17% Similarity=0.171 Sum_probs=99.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|.+|||||||++++++...... ..+..+.......+.+.+ ..+.+|||||...+.
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 67 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPV-HDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFR--------------- 67 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 47999999999999999999998653221 112222222222333443 468999999964321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHH---hh-cCCCeEEEEecccCCC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KN-YMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~---~~-~~~~p~ilV~NK~Dl~ 316 (484)
......+..+|++++|+|+..+.+..+ +..|+. .. ..+.|+++|+||+|+.
T Consensus 68 -----------------------~~~~~~~~~~d~il~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~pvivv~nK~Dl~ 122 (168)
T cd01866 68 -----------------------SITRSYYRGAAGALLVYDITRRETFNH--LTSWLEDARQHSNSNMTIMLIGNKCDLE 122 (168)
T ss_pred -----------------------HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence 223456678999999999875433322 223332 22 2468999999999987
Q ss_pred chhhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
..... +... ....+.+++++||+++.|+++++..+.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 123 SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 43211 1111 233467889999999999999998887655
No 138
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.64 E-value=2.3e-15 Score=163.20 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=116.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|++|||||||+|+|+|.+ ..+++.+|+|.+...+.+.+++.++.++||||+.+......... .
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s--~------- 72 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTS--L------- 72 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccccccccccc--H-------
Confidence 4689999999999999999999976 46788999999998888888888999999999986543211000 0
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHH--hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~--~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.+ +.+..+ ...+|++++|+|+++.. ....+...+.+. +.|+++|+||+|+.++..
T Consensus 73 ----------------~E---~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~--giPvIvVlNK~Dl~~~~~ 129 (772)
T PRK09554 73 ----------------DE---QIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLEL--GIPCIVALNMLDIAEKQN 129 (772)
T ss_pred ----------------HH---HHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHc--CCCEEEEEEchhhhhccC
Confidence 00 111122 24689999999987532 223334445554 899999999999874322
Q ss_pred -hhhHH--HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 321 -MQVSE--FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 321 -~~~~~--~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
....+ ....+.+++++||++|.|++++++.+.+..
T Consensus 130 i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 130 IRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred cHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 11111 134578999999999999999999987754
No 139
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.64 E-value=1.9e-15 Score=135.14 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=98.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..||+++|++|||||||++++.+... ....+.+. .......+.+++. .+.+|||||...+.
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 65 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFR-------------- 65 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCC--CCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHH--------------
Confidence 36899999999999999999997643 22222222 1222222344443 57899999975422
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++|+|+|...+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 66 ------------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 66 ------------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 2223556889999999998765333221 122222221 24678999999999865
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ....+ ...+++++++||++|.|+.+++..+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 122 QRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4221 11122 23466889999999999999998887654
No 140
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.64 E-value=1.5e-15 Score=137.20 Aligned_cols=151 Identities=23% Similarity=0.260 Sum_probs=97.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|.+|||||||++++...... ...| |..............+.+|||||...+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--~~~~--t~~~~~~~~~~~~~~l~l~D~~G~~~~~----------------- 71 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--TTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR----------------- 71 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--CcCC--ccccceEEEEECCEEEEEEECCCChhhH-----------------
Confidence 579999999999999999999644321 1122 2222223345567789999999975422
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|++|+|+|++.+.+.. ...+...+.. ...+.|+++|+||+|+....
T Consensus 72 ---------------------~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 130 (175)
T smart00177 72 ---------------------PLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130 (175)
T ss_pred ---------------------HHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC
Confidence 22335578899999999987653221 1122222222 12468999999999986532
Q ss_pred hh-hhHHHHh------cCCCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IM-QVSEFWS------LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~-~~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. +...... ..+.++++||++|.|+.+++++|.+.+
T Consensus 131 ~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 131 KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 11 1111111 122456899999999999999987654
No 141
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.64 E-value=2.1e-15 Score=134.19 Aligned_cols=152 Identities=18% Similarity=0.144 Sum_probs=99.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|+|||||++++++... .....+++..........++ ..+.+|||||.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------------- 62 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---------------- 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh----------------
Confidence 4899999999999999999997643 22333333333333344443 358899999975422
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHhh-cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..++.+++|+|...+.+.. ......++... ..+.|+++|+||+|+...
T Consensus 63 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~ 120 (164)
T cd04139 63 ----------------------AIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK 120 (164)
T ss_pred ----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc
Confidence 22235667889999999976543221 22222233221 247999999999998762
Q ss_pred h-h--hhhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 G-I--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~-~--~~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
. . ..... ....+++++++||++|.|+.+++..+.+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 121 RQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred cccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 1 1 11111 223467899999999999999999987765
No 142
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=4.2e-15 Score=149.29 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=120.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC---CceeeEeeccccccccCCCchhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
+.|.|+++||...|||||+..|.+.+. ......+.|++..-..+.++ ...++++|||||..|..+..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~V-a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa--------- 73 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNV-AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA--------- 73 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCcc-ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh---------
Confidence 478999999999999999999998764 34556788888887777774 46899999999976544321
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
+....+|+++||+|+.++...+..+.++.++.. +.|+++.+||+|..+.
T Consensus 74 -----------------------------RGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a--~vP~iVAiNKiDk~~~ 122 (509)
T COG0532 74 -----------------------------RGASVTDIAILVVAADDGVMPQTIEAINHAKAA--GVPIVVAINKIDKPEA 122 (509)
T ss_pred -----------------------------cCCccccEEEEEEEccCCcchhHHHHHHHHHHC--CCCEEEEEecccCCCC
Confidence 334678999999999999999999999988886 9999999999999864
Q ss_pred hhhhhH-HHHhcC---------CCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIMQVS-EFWSLG---------FSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~~~-~~~~~~---------~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
...... +....+ ..++++||++|.|+++|+..+.-.-
T Consensus 123 np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~a 169 (509)
T COG0532 123 NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLA 169 (509)
T ss_pred CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHH
Confidence 332221 112222 3578999999999999999876543
No 143
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.64 E-value=1.6e-15 Score=141.40 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=99.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
+||+++|.+|||||||++++.+..... ..+ |.........+....+.+|||||...+...
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~--~~~--Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l---------------- 60 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD--TVS--TVGGAFYLKQWGPYNISIWDTAGREQFHGL---------------- 60 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC--CCC--ccceEEEEEEeeEEEEEEEeCCCcccchhh----------------
Confidence 479999999999999999999775422 111 222222222344567899999998653321
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCch---
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK--- 318 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~--- 318 (484)
...++..+|++|+|+|.+...+.... ++.........+.|+++|+||+|+...
T Consensus 61 ----------------------~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~ 118 (220)
T cd04126 61 ----------------------GSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGAL 118 (220)
T ss_pred ----------------------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccccc
Confidence 12446789999999998875444332 222222222246899999999998651
Q ss_pred ----------------hhh---hhHHHH-hcC--------------CCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 319 ----------------GIM---QVSEFW-SLG--------------FSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ----------------~~~---~~~~~~-~~~--------------~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... +...+. ..+ .+++++||++|.|+++++..+.+.+...
T Consensus 119 ~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~ 192 (220)
T cd04126 119 AGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPL 192 (220)
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 110 111111 112 4689999999999999999998776543
No 144
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.64 E-value=2e-15 Score=135.97 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=98.6
Q ss_pred EEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 166 V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
|+++|.+|||||||++++.+.... ..+..+........+.+++. .+.+|||||.........
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~-------------- 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP--EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRP-------------- 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC--CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhch--------------
Confidence 579999999999999999986532 22222222222333444454 478999999865433221
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchhh-
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~- 320 (484)
..+..+|++|+|+|...+.+.... .+...+.....+.|+++|+||+|+.....
T Consensus 65 ------------------------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~ 120 (174)
T smart00174 65 ------------------------LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKST 120 (174)
T ss_pred ------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhh
Confidence 345678999999998765333322 23444544456899999999999865221
Q ss_pred -----------hh---hHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011492 321 -----------MQ---VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 321 -----------~~---~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. ...+ ...+. +++++||++|.|+++++..+.+.+
T Consensus 121 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 121 LRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred hhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 00 0111 22343 789999999999999999987654
No 145
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.63 E-value=2.4e-15 Score=133.70 Aligned_cols=152 Identities=16% Similarity=0.092 Sum_probs=98.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+++|.+..... ...+..+.......+.+.+ ..+.+|||||...+.
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---------------- 63 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKE-DSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR---------------- 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHH----------------
Confidence 489999999999999999999765321 1122222222222333444 357899999975322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .++..+... ..+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~ 121 (161)
T cd04113 64 ----------------------SVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQR 121 (161)
T ss_pred ----------------------HhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhc
Confidence 2233556789999999998775443322 222222221 2478999999999987532
Q ss_pred hh---hhH-HHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 IM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~---~~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.. ... .....++.++++||+++.|+.+++..+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 122 EVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred cCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 11 111 122345789999999999999999988753
No 146
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.63 E-value=1.3e-15 Score=138.34 Aligned_cols=152 Identities=20% Similarity=0.239 Sum_probs=99.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|..|||||||++++.........+ |.......+...+..+.+|||||...+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~p----t~g~~~~~~~~~~~~~~i~D~~Gq~~~~----------------- 75 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNISFTVWDVGGQDKIR----------------- 75 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCccccC----CcceeEEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 5799999999999999999998654322212 2222233455667789999999975321
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|++|+|+|++++.+... .++...+.. ...+.|++||+||+|+....
T Consensus 76 ---------------------~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~ 134 (181)
T PLN00223 76 ---------------------PLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM 134 (181)
T ss_pred ---------------------HHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC
Confidence 222355788999999999876433221 112222221 22478999999999986532
Q ss_pred hhhh-HHHHhc------CCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQV-SEFWSL------GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~~-~~~~~~------~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ...... .+.++++||++|+|+.+++++|.+.+.
T Consensus 135 ~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 135 NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred CHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 2111 111111 123457999999999999999987653
No 147
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.63 E-value=9.3e-16 Score=139.57 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=95.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe---CCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..+|+++|.+|||||||++++.+.... ...+..........+.. .+..+.+|||||...+.
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------- 66 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR-------------- 66 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC--CcCCccccceeEEEeeccCCCceEEEEEECCCcHhHH--------------
Confidence 468999999999999999999876532 22221111111112221 34578999999975321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~ 316 (484)
......+..+|++++|+|+..+...... ..+..+.. ...+.|+++|+||+|+.
T Consensus 67 ------------------------~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 67 ------------------------PLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred ------------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 1223456789999999998764222111 11111211 11368999999999986
Q ss_pred chhh-hhhHHHH---hc----CCCceeeecccCCCCchhhHHHHHHhh
Q 011492 317 RKGI-MQVSEFW---SL----GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~-~~~~~~~---~~----~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... .....+. .. .++++++||++|.|+++++.++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 123 NALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred ccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence 4211 1111111 11 235789999999999999999987764
No 148
>PRK01889 GTPase RsgA; Reviewed
Probab=99.63 E-value=9.1e-16 Score=153.19 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=99.6
Q ss_pred hhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhh--hhhHHHHhcCCCceeeecccCCCCch
Q 011492 270 IEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEFWSLGFSPLPISAISGTGTGE 346 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~~~~~i~vSa~~g~gi~~ 346 (484)
+.++|.+++|+++..++..... .++..+.. .+.+.++|+||+|+.+... .........+++++.+|++++.|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~ 187 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDV 187 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHH
Confidence 5789999999998644443222 12222233 4788899999999986421 12222224578999999999999999
Q ss_pred hhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-------CceecccceeeecCCC
Q 011492 347 LLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEFTGPEG 419 (484)
Q Consensus 347 L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-------gtt~~~~~~~~~~~~g 419 (484)
|..++.. +.+++++|.+|+|||||+|+|+|.....++.++ .+|+......+ ..+
T Consensus 188 L~~~L~~-----------------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l--~~~ 248 (356)
T PRK01889 188 LAAWLSG-----------------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPL--PSG 248 (356)
T ss_pred HHHHhhc-----------------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEe--cCC
Confidence 8888731 358999999999999999999997766665443 24433222221 222
Q ss_pred CcEEEEEcCCCccCcccc
Q 011492 420 QKFRLIDTAGIRKRAAIA 437 (484)
Q Consensus 420 ~~i~liDTPG~~~~~~~~ 437 (484)
..++||||+..+.+.+
T Consensus 249 --~~l~DtpG~~~~~l~~ 264 (356)
T PRK01889 249 --GLLIDTPGMRELQLWD 264 (356)
T ss_pred --CeecCCCchhhhcccC
Confidence 3789999998877654
No 149
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=2.9e-15 Score=135.50 Aligned_cols=150 Identities=16% Similarity=0.132 Sum_probs=100.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+... ...+.++........+.+++. .+.+|||+|...+.....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~------------ 67 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRP------------ 67 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--CCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcch------------
Confidence 5899999999999999999997642 222222222222223444443 478999999865433221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCch-
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK- 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~- 318 (484)
.++..+|++|+|+|...+.+... ..+...+.+..++.|+++|+||+|+...
T Consensus 68 --------------------------~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~ 121 (178)
T cd04131 68 --------------------------LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDL 121 (178)
T ss_pred --------------------------hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcCh
Confidence 34678999999999887655544 2344555555568899999999998541
Q ss_pred -----------hhh---hhHHH-HhcCC-CceeeecccCCC-CchhhHHHHH
Q 011492 319 -----------GIM---QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (484)
Q Consensus 319 -----------~~~---~~~~~-~~~~~-~~i~vSa~~g~g-i~~L~~~i~~ 353 (484)
... +...+ ...+. +++++||++|.+ +++++..+..
T Consensus 122 ~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 122 STLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHH
Confidence 001 11112 23454 689999999995 9999988766
No 150
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.63 E-value=4.7e-15 Score=156.07 Aligned_cols=154 Identities=22% Similarity=0.273 Sum_probs=102.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe------------------CCceeeEeecccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGVLN 223 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~i~liDtpG~~~ 223 (484)
+.+.|+++|++|+|||||+|+|++..... ....+.|++.....+.. ....+.+|||||+..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 46899999999999999999999875321 11222333211111111 112488999999864
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+.. .....+..+|++++|+|+..+......+.+.++... +
T Consensus 82 f~~--------------------------------------l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~--~ 121 (590)
T TIGR00491 82 FTN--------------------------------------LRKRGGALADLAILIVDINEGFKPQTQEALNILRMY--K 121 (590)
T ss_pred HHH--------------------------------------HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc--C
Confidence 321 122456789999999999887777777777766654 8
Q ss_pred CeEEEEecccCCCchhh--------------h----hhH---------HHH---------------hcCCCceeeecccC
Q 011492 304 KFIILAVNKCESPRKGI--------------M----QVS---------EFW---------------SLGFSPLPISAISG 341 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~--------------~----~~~---------~~~---------------~~~~~~i~vSa~~g 341 (484)
.|+++|+||+|+..... . ... .+. ....+++++||++|
T Consensus 122 vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tG 201 (590)
T TIGR00491 122 TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITG 201 (590)
T ss_pred CCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCC
Confidence 89999999999863100 0 000 001 11347899999999
Q ss_pred CCCchhhHHHHHHhh
Q 011492 342 TGTGELLDLVCSELK 356 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~ 356 (484)
+|+++|+.++.....
T Consensus 202 eGideLl~~l~~l~~ 216 (590)
T TIGR00491 202 EGIPELLTMLAGLAQ 216 (590)
T ss_pred CChhHHHHHHHHHHH
Confidence 999999998865443
No 151
>PLN03118 Rab family protein; Provisional
Probab=99.63 E-value=2e-15 Score=140.65 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=102.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..+||+++|.+|||||||+++|++........+.+ .......+.+++ ..+.+|||||...+..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~------------- 77 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIG--VDFKIKQLTVGGKRLKLTIWDTAGQERFRT------------- 77 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCce--eEEEEEEEEECCEEEEEEEEECCCchhhHH-------------
Confidence 36799999999999999999999875432222222 222223334444 4578999999754322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH--HHHHHHhh--cCCCeEEEEecccCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKN--YMDKFIILAVNKCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~--~~~~l~~~--~~~~p~ilV~NK~Dl 315 (484)
.....+..+|++|+|+|...+.+..... +...+... ..+.|+++|+||+|+
T Consensus 78 -------------------------~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl 132 (211)
T PLN03118 78 -------------------------LTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132 (211)
T ss_pred -------------------------HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 2235567899999999987654333321 22222221 135789999999998
Q ss_pred Cchhhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 316 PRKGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... ... ....+.+++++||+++.|+++++..+...+..
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~~ 178 (211)
T PLN03118 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIME 178 (211)
T ss_pred cccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 6532211 111 22345678999999999999999999887653
No 152
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.63 E-value=2.5e-15 Score=135.02 Aligned_cols=153 Identities=19% Similarity=0.114 Sum_probs=98.3
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecC-CCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
||+++|.+|||||||++++.+... ...+ +..........+.+.+ ..+.+|||||...+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------------- 64 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--------------- 64 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC--CCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh---------------
Confidence 799999999999999999998643 1222 2222233333344444 3589999999864322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHh-hcC-CCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRK-NYM-DKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~-~~~-~~p~ilV~NK~Dl~~~ 318 (484)
.....+..+|++++|+|+..+.+... ..++..+.+ ..+ ..|+++|.||+|+...
T Consensus 65 -----------------------~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 65 -----------------------IASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred -----------------------hHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 22355678999999999865322221 123333322 222 3568999999998653
Q ss_pred hhh---h-h-HHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 319 GIM---Q-V-SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~-~-~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... . . ..+ ...+.+++++||++|.|+++++..+.+...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 122 AQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred ccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 221 1 1 111 2335678999999999999999999877643
No 153
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.63 E-value=2.9e-15 Score=137.04 Aligned_cols=150 Identities=21% Similarity=0.205 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|++|||||||+++|.+....... .|.......+.+.+..+.+|||||.....
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~----~T~~~~~~~i~~~~~~~~l~D~~G~~~~~----------------- 77 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHV----PTLHPTSEELTIGNIKFKTFDLGGHEQAR----------------- 77 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccC----CccCcceEEEEECCEEEEEEECCCCHHHH-----------------
Confidence 679999999999999999999986532211 23333445667778889999999975321
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|.+++|+|+.+..... ...+...+.. ...+.|+++|+||+|+....
T Consensus 78 ---------------------~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~ 136 (190)
T cd00879 78 ---------------------RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAV 136 (190)
T ss_pred ---------------------HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCc
Confidence 22335567889999999987542211 1112222221 12468999999999986421
Q ss_pred hhh-hHHHHh-----------------cCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 IMQ-VSEFWS-----------------LGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~~-~~~~~~-----------------~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ...+.. ..+.++++||++|.|+.++++++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 137 SEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CHHHHHHHhCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 111 111111 11357899999999999999998764
No 154
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.63 E-value=2.8e-15 Score=134.17 Aligned_cols=151 Identities=19% Similarity=0.092 Sum_probs=98.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+.... ...+.+. ........+ ....+.+|||||.....
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---------------- 61 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDR---------------- 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhh----------------
Confidence 38999999999999999999876532 2222221 111111122 33568899999975422
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 62 ----------------------~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~ 119 (166)
T cd01893 62 ----------------------ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGS 119 (166)
T ss_pred ----------------------HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccc
Confidence 1122445789999999998765544432 2344454433578999999999997643
Q ss_pred hh----hhHHH--Hh-cC-CCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IM----QVSEF--WS-LG-FSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~----~~~~~--~~-~~-~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. ..... .. .. .+++++||+++.|+++++..+...+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 120 SQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred chhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence 21 11111 11 12 2688999999999999999887654
No 155
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=4.8e-15 Score=156.98 Aligned_cols=156 Identities=19% Similarity=0.196 Sum_probs=115.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcce--eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..|+++|++++|||||+++|+|.... ......+.|.+.....+.+.+..+.+|||||+..+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f----------------- 63 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF----------------- 63 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH-----------------
Confidence 36899999999999999999985311 12234577777777777777888999999998532
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-EEEEecccCCCchhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~~~ 320 (484)
.+.+...+.++|++++|+|+.++......+.+.++... +.| +++|+||+|+.+...
T Consensus 64 ---------------------~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~ 120 (581)
T TIGR00475 64 ---------------------ISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEE 120 (581)
T ss_pred ---------------------HHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHH
Confidence 13445667889999999999887666666666666544 777 999999999986442
Q ss_pred hh-----hHHHH-hc----CCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 321 MQ-----VSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 321 ~~-----~~~~~-~~----~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
.. ...+. .. +++++++||++|.|+++++..+...+....
T Consensus 121 ~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~~ 169 (581)
T TIGR00475 121 IKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESLD 169 (581)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhCC
Confidence 21 11111 11 468999999999999999999887765443
No 156
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=2.9e-15 Score=133.04 Aligned_cols=151 Identities=16% Similarity=0.133 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.||+++|++|+|||||+++|++..... ..+..+.+. ....+.+.+ ..+.+|||||......
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~D~~g~~~~~~-------------- 64 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDF--KVKTLTVDGKKVKLAIWDTAGQERFRT-------------- 64 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceE--EEEEEEECCEEEEEEEEECCCchhhhh--------------
Confidence 489999999999999999999775322 222222222 222233333 4589999999754221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh--cCCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
.....+..+|++++|+|...+.+..... +...+... ..+.|+++|+||+|+..
T Consensus 65 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 65 ------------------------LTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred ------------------------hhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 1224567899999999987654332221 22333332 14688999999999973
Q ss_pred hhhhh--hHH-HHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 318 KGIMQ--VSE-FWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 318 ~~~~~--~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
..... ... ....+++++++||++|.|+.++++.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 121 REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 32111 111 12346789999999999999999988653
No 157
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=4.8e-15 Score=129.19 Aligned_cols=159 Identities=19% Similarity=0.203 Sum_probs=112.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|..+||||||+++++-.. ......+..-.+.....+.+.++. +.+|||+|+++++..
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~-fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrsl------------- 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK-FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------- 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh-hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhh-------------
Confidence 4799999999999999999988653 122222333445566666776654 789999999876543
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHhhcC-CCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRKNYM-DKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~~~~-~~p~ilV~NK~Dl~~ 317 (484)
+-.+++++.++|+|+|.....+.. ..++.....+... +.-+++|.||.||.+
T Consensus 88 -------------------------ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~d 142 (221)
T KOG0094|consen 88 -------------------------IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSD 142 (221)
T ss_pred -------------------------hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccc
Confidence 336779999999999987754433 3333334444433 355788999999998
Q ss_pred hhhhhhH----HHHhcCCCceeeecccCCCCchhhHHHHHHhhhccC
Q 011492 318 KGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (484)
Q Consensus 318 ~~~~~~~----~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~ 360 (484)
+...... .....+.-++.+||+.|.|+.+++..|...++....
T Consensus 143 krqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 143 KRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred hhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 6443322 233455678899999999999999999988876654
No 158
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.63 E-value=3.4e-15 Score=136.70 Aligned_cols=143 Identities=15% Similarity=0.102 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcc------e---------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
..+|+++|+.++|||||+++|++... . ......+.|.......+..++..+.++||||+..+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY--- 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH---
Confidence 36899999999999999999985410 0 00113466666666666667788999999998531
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-E
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (484)
...+...+..+|++++|+|+..+....+.+++..+... +.| +
T Consensus 79 -----------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~i 121 (195)
T cd01884 79 -----------------------------------IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYI 121 (195)
T ss_pred -----------------------------------HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcE
Confidence 13455677889999999999888877777777777765 676 7
Q ss_pred EEEecccCCCchhh-hh-----hHHHH-hc-----CCCceeeecccCCCCc
Q 011492 307 ILAVNKCESPRKGI-MQ-----VSEFW-SL-----GFSPLPISAISGTGTG 345 (484)
Q Consensus 307 ilV~NK~Dl~~~~~-~~-----~~~~~-~~-----~~~~i~vSa~~g~gi~ 345 (484)
++|+||+|+..... .. ...+. .. +.+++++||++|.++.
T Consensus 122 IvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~~ 172 (195)
T cd01884 122 VVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEGD 172 (195)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCCC
Confidence 78999999864221 11 11111 11 3578999999999864
No 159
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.63 E-value=3.8e-15 Score=159.20 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=109.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe----CCceeeEeeccccccccCCCchhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~liDtpG~~~~~~~~~~~~~~~~ 236 (484)
.+.++|+++|++|+|||||+++|++.... ....++.|.......+.+ .+..+.+|||||+..+.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~----------- 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS----------- 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH-----------
Confidence 46789999999999999999999976532 233345555433333333 24789999999986422
Q ss_pred hhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC
Q 011492 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
......+..+|++|+|+|+..+......+.+..+... +.|+++|+||+|+.
T Consensus 310 ---------------------------~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~--~iPiIVViNKiDl~ 360 (742)
T CHL00189 310 ---------------------------SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA--NVPIIVAINKIDKA 360 (742)
T ss_pred ---------------------------HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc--CceEEEEEECCCcc
Confidence 2233566889999999999887766666666666554 89999999999987
Q ss_pred chhhhh---hHHHH-----hc--CCCceeeecccCCCCchhhHHHHHHh
Q 011492 317 RKGIMQ---VSEFW-----SL--GFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 317 ~~~~~~---~~~~~-----~~--~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
...... .+... .. .++++++||++|.|+++|++.+....
T Consensus 361 ~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 361 NANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred ccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 532211 11110 11 25789999999999999999887653
No 160
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.63 E-value=4.3e-15 Score=132.22 Aligned_cols=152 Identities=15% Similarity=0.090 Sum_probs=97.7
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.+|+++|.+|+|||||++++.+.... ....+..........+.+.+ ..+.+|||+|...+..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~--------------- 64 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFH-SSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT--------------- 64 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHh---------------
Confidence 37999999999999999999876532 11122222222233444544 3578999999754322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
.....+..+|++++|+|...+.+.... .++..+.... .+.|+++|.||+|+....
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~ 121 (161)
T cd04117 65 -----------------------ITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKR 121 (161)
T ss_pred -----------------------hHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 222456789999999998765333221 1222222222 257999999999986533
Q ss_pred hh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.. ....+ ...+.+++++||++|.|+++++.+|.+.
T Consensus 122 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 122 QVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence 21 11112 2245678999999999999999998653
No 161
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.63 E-value=3e-15 Score=137.16 Aligned_cols=154 Identities=15% Similarity=0.085 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|..|||||||++++..... ...+..+........+.+++ ..+.+|||+|...+....
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~------------ 68 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLR------------ 68 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCC--CcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhh------------
Confidence 46899999999999999999987542 11222222222222334444 357899999987644322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH--HHHHHHhhcCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE--IADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~--~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
..++..+|++|+|+|...+.+..... +...+.....+.|+++|+||.|+...
T Consensus 69 --------------------------~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~ 122 (191)
T cd01875 69 --------------------------TLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRND 122 (191)
T ss_pred --------------------------hhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcC
Confidence 13457899999999987765443331 33334444457899999999998643
Q ss_pred hh------------h---hhHHHH-hcC-CCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GI------------M---QVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~------------~---~~~~~~-~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.. . +...+. ..+ .+++++||++|.|+++++..+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 123 ADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred hhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence 11 0 011121 234 47899999999999999999987653
No 162
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=2.1e-15 Score=135.30 Aligned_cols=150 Identities=16% Similarity=0.165 Sum_probs=97.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|.+|||||||+++|++.... .....+............ ...+.+|||||+........
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~------------ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRP------------ 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccch------------
Confidence 48999999999999999999987531 111222222222222333 23589999999875322211
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++++|+|...+.+... ..+...+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 67 --------------------------LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred --------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 23467899999999876433322 22344444444579999999999987643
Q ss_pred hh--------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHH
Q 011492 320 IM--------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 320 ~~--------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.. ....+ ...+. +++++||++|.|+.+++..+.+
T Consensus 121 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 121 NTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred hhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 21 11111 22344 7899999999999999988764
No 163
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=4.5e-15 Score=133.23 Aligned_cols=153 Identities=17% Similarity=0.166 Sum_probs=99.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCcee-eeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR-DRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
+..+|+++|.+|||||||++++++.... ...+.+++. ......+.+.+ ..+.+||++|........
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---------- 71 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLN---------- 71 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccc----------
Confidence 3578999999999999999999987532 123333322 22223344555 357899999976543222
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh--cCCCeEEEEecccCCC
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN--YMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~--~~~~p~ilV~NK~Dl~ 316 (484)
..++..+|++++|+|+..+.+.. .+..++... ..+.|+++|+||+|+.
T Consensus 72 ----------------------------~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 121 (169)
T cd01892 72 ----------------------------DAELAACDVACLVYDSSDPKSFS--YCAEVYKKYFMLGEIPCLFVAAKADLD 121 (169)
T ss_pred ----------------------------hhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHhccCCCCeEEEEEEccccc
Confidence 13457899999999986653221 222333321 1368999999999986
Q ss_pred chhh---hhhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011492 317 RKGI---MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 317 ~~~~---~~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... .....+ ...+. .++++||++|.|++++++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 122 EQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred ccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 4321 111222 22344 468999999999999999987754
No 164
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.62 E-value=3.4e-15 Score=134.56 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=99.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|.+|+|||||++++.+... ...+.++..+.....+.+++ ..+.+|||||...+.....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRP------------ 66 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccc------------
Confidence 4799999999999999999986542 23344444333333445554 3578899999865443322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++++|+|...+.+.... .+...+.....+.|+++|+||+|+....
T Consensus 67 --------------------------~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 120 (173)
T cd04130 67 --------------------------LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDV 120 (173)
T ss_pred --------------------------cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccCh
Confidence 245788999999998776544332 2444444433578999999999986431
Q ss_pred h------------h---hhHHH-HhcCC-CceeeecccCCCCchhhHHHH
Q 011492 320 I------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 320 ~------------~---~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~ 352 (484)
. . ....+ ...+. .++++||++|.|++++++.+.
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 121 NVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred hHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 0 0 11111 12344 789999999999999998764
No 165
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.62 E-value=2.1e-15 Score=133.59 Aligned_cols=147 Identities=22% Similarity=0.272 Sum_probs=96.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
||+++|.+|||||||++++++........ |.......+.+.+..+.+|||||.....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~D~~G~~~~~------------------- 57 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIP----TIGFNVETVEYKNVSFTVWDVGGQDKIR------------------- 57 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCC----CcCcceEEEEECCEEEEEEECCCChhhH-------------------
Confidence 68999999999999999999876322222 2223333455667789999999976421
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhh-cCCCeEEEEecccCCCchhhh
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
......+..+|++++|+|+..+..... ..+...+... ..+.|+++|+||+|+......
T Consensus 58 -------------------~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 118 (158)
T cd00878 58 -------------------PLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSV 118 (158)
T ss_pred -------------------HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCH
Confidence 122345678899999999876522211 1122222211 247899999999998764311
Q ss_pred h-hHHHH------hcCCCceeeecccCCCCchhhHHHHH
Q 011492 322 Q-VSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 322 ~-~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
. ..... ....+++++||++|.|+++++++|..
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 119 SELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 1 11111 12346899999999999999988754
No 166
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.62 E-value=2.4e-15 Score=136.74 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=98.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..||+++|.+|||||||++++........ .+ |.......+...+..+.+|||||.....
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~~--~~--T~~~~~~~~~~~~~~~~l~D~~G~~~~~----------------- 75 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVTT--IP--TIGFNVETVEYKNLKFTMWDVGGQDKLR----------------- 75 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcccc--CC--ccccceEEEEECCEEEEEEECCCCHhHH-----------------
Confidence 57899999999999999999975433211 12 2223333455667789999999985322
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc--ccHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~--~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.....++..+|++|+|+|++.+.+. ....+...+.. ...+.|+++|+||.|+....
T Consensus 76 ---------------------~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~ 134 (182)
T PTZ00133 76 ---------------------PLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134 (182)
T ss_pred ---------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC
Confidence 2233567889999999998754222 11122233322 22468999999999986532
Q ss_pred hhh-hHHHHhc------CCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQ-VSEFWSL------GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~-~~~~~~~------~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ....... .+.++++||++|.|++++++++.+.+.
T Consensus 135 ~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 135 STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence 111 1111111 123568899999999999999987664
No 167
>PLN03110 Rab GTPase; Provisional
Probab=99.62 E-value=4.1e-15 Score=138.97 Aligned_cols=157 Identities=17% Similarity=0.140 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|++|||||||+++|.+.... ....+..........+.+.+ ..+.+|||||...+.
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~-~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~--------------- 75 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFC-LESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR--------------- 75 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 579999999999999999999976532 12222222333334445544 368999999975422
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
......+..++++|+|+|...+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 76 -----------------------~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 76 -----------------------AITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132 (216)
T ss_pred -----------------------HHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccc
Confidence 2233566789999999998765433222 2233333322 36899999999998543
Q ss_pred hhhh--h-HH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 319 GIMQ--V-SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~~~--~-~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.... . .. ....+++++++||++|.|++++++.+...+.+.
T Consensus 133 ~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~~ 176 (216)
T PLN03110 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHI 176 (216)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 2111 1 11 123467899999999999999999998877543
No 168
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=3e-15 Score=138.04 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=100.1
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
||+++|.+|||||||++++++.... ..+..++.......+.+.+ ..+.+|||||...+...
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------------- 63 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAM--------------- 63 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHH---------------
Confidence 6899999999999999999976532 2233333333334455555 46889999997643221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCch-
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPRK- 318 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~~- 318 (484)
...++..+|++++|+|+.++.+.... .+...+.... .+.|+++|+||+|+...
T Consensus 64 -----------------------~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~ 120 (198)
T cd04147 64 -----------------------RKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE 120 (198)
T ss_pred -----------------------HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc
Confidence 12356789999999998764333322 1222222221 36899999999998652
Q ss_pred hhhh---hHHH--HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIMQ---VSEF--WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~---~~~~--~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... .... ...+.+++++||++|.|+.++++++.+.+.
T Consensus 121 ~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 121 RQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred ccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 2111 1111 123457899999999999999999988664
No 169
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.62 E-value=3.5e-15 Score=135.40 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=101.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+++|.+|||||||++++.+... ...+.++........+.+++. .+.+|||+|...+...
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~~~f--~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~------------- 69 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNV------------- 69 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhh-------------
Confidence 57899999999999999999987642 222222222222223444443 5899999998643321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
...++..+|++++|+|...+.+.... .+...+....++.|++||+||+|+...
T Consensus 70 -------------------------~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 124 (182)
T cd04172 70 -------------------------RPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTD 124 (182)
T ss_pred -------------------------hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcC
Confidence 12456789999999998876555442 344555555567899999999998531
Q ss_pred ------------hhh---hhHHH-HhcCC-CceeeecccCCC-CchhhHHHHH
Q 011492 319 ------------GIM---QVSEF-WSLGF-SPLPISAISGTG-TGELLDLVCS 353 (484)
Q Consensus 319 ------------~~~---~~~~~-~~~~~-~~i~vSa~~g~g-i~~L~~~i~~ 353 (484)
... +...+ ...+. +++++||++|.| +++++..+..
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 125 LTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred hhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHH
Confidence 001 11112 23453 789999999998 9999988765
No 170
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.62 E-value=9.2e-16 Score=142.71 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCC-CceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|++|+||||++|+|+|..++.++... +.|+.+..... ..+|+.+.||||||+.+....+ ......+.+++
T Consensus 2 ~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~-~~~g~~v~VIDTPGl~d~~~~~---~~~~~~i~~~l 77 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSG-EVDGRQVTVIDTPGLFDSDGSD---EEIIREIKRCL 77 (212)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEE-EETTEEEEEEE--SSEETTEEH---HHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeee-eecceEEEEEeCCCCCCCcccH---HHHHHHHHHHH
Confidence 7999999999999999999999999887543 44554444333 5689999999999998764321 22333344445
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
..+.+++|+||||+++. +||.+|+.+++.+
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l 107 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELL 107 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHH
Confidence 55678899999999987 9999999998654
No 171
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.62 E-value=1.4e-15 Score=139.98 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=82.3
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecC-CCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSP-ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~-~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|++|+|||||+|+|+|.+.+.+.. .+|+|+++...... ..|+++.||||||+.+.... .......+...+
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~---~~~~~~~i~~~~ 77 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVS---PEQLSKEIVRCL 77 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCC---hHHHHHHHHHHH
Confidence 79999999999999999999998887664 45788776665554 47889999999999875321 122344455556
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
..+.+++|++|+|+++.. ++++|+.+++++
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d~~~l~~l 107 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEEEQAVETL 107 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHHHHHHHHH
Confidence 666789999999999875 999999998764
No 172
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.62 E-value=2.9e-15 Score=130.27 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=89.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
||+++|++|||||||+|+|.+.... ... |. ...+.+ .+|||||.... ...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~-----~~~~~~---~~iDt~G~~~~---~~~-------------- 51 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ-----AVEYND---GAIDTPGEYVE---NRR-------------- 51 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce-----eEEEcC---eeecCchhhhh---hHH--------------
Confidence 7999999999999999999987531 111 11 122222 68999997310 000
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh--hh
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ 322 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~ 322 (484)
+.+.....+.++|++++|+|+..+.+.....+.. .. ..|+++|+||+|+.+... ..
T Consensus 52 -----------------~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~---~~--~~p~ilv~NK~Dl~~~~~~~~~ 109 (142)
T TIGR02528 52 -----------------LYSALIVTAADADVIALVQSATDPESRFPPGFAS---IF--VKPVIGLVTKIDLAEADVDIER 109 (142)
T ss_pred -----------------HHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHH---hc--cCCeEEEEEeeccCCcccCHHH
Confidence 0122234578999999999998877665543322 21 459999999999865321 11
Q ss_pred hHHH-HhcCC-CceeeecccCCCCchhhHHHH
Q 011492 323 VSEF-WSLGF-SPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 323 ~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~ 352 (484)
...+ ...+. +++++||++|.|++++++++.
T Consensus 110 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 110 AKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 1222 22344 689999999999999988763
No 173
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=4e-15 Score=132.91 Aligned_cols=152 Identities=17% Similarity=0.186 Sum_probs=98.5
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
+|+++|.+|||||||+++++.... ...+++++.........+++. .+.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~---------------- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT---------------- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc----------------
Confidence 589999999999999999886532 223333332222333445554 478999999864111
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh---cCCCeEEEEecccCCCch
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN---YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+.... .+..++... ..+.|+++|+||+|+...
T Consensus 63 ---------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 63 ---------------------EQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred ---------------------chHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 1122456789999999998765433322 233344432 237899999999998543
Q ss_pred hhhh---hHH-HHhcCCCceeeecccCC-CCchhhHHHHHHh
Q 011492 319 GIMQ---VSE-FWSLGFSPLPISAISGT-GTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~---~~~-~~~~~~~~i~vSa~~g~-gi~~L~~~i~~~l 355 (484)
.... ... ....+.+++++||++|. |+++++..+.+.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 122 RQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence 2111 111 12345688999999995 9999999987654
No 174
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.61 E-value=6.1e-15 Score=133.98 Aligned_cols=155 Identities=15% Similarity=0.130 Sum_probs=98.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|..|||||||++++.+.... ....+..........+.+++ ..+.+|||+|...+...
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~-~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~-------------- 65 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFD-EDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINM-------------- 65 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHh--------------
Confidence 48999999999999999999876432 11122211223233455555 35799999998653321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch--
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK-- 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~-- 318 (484)
...++..+|++++|+|.+++.+.... .++..+.+.....+.++|+||+|+...
T Consensus 66 ------------------------~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~ 121 (182)
T cd04128 66 ------------------------LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLP 121 (182)
T ss_pred ------------------------hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccc
Confidence 22456789999999998765443332 233333332222334788999998531
Q ss_pred --h---hhh-hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 319 --G---IMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 --~---~~~-~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. ... ...+ ...+.+++++||++|.|+++++.++.+.+.+
T Consensus 122 ~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 122 PEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred chhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 1 111 1112 2345678999999999999999999876654
No 175
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.61 E-value=5.1e-15 Score=130.39 Aligned_cols=150 Identities=18% Similarity=0.166 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|.+|+|||||+|+|.+...... ..+..........+.. ....+.+||+||.....
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---------------- 63 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDEN-YKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR---------------- 63 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCc-cCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH----------------
Confidence 4799999999999999999998764332 1122222222222333 23568999999974321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc-CCCeEEEEecccCCC-ch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESP-RK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~Dl~-~~ 318 (484)
......+.++|++++|+|+..+..... ..+...+.... .+.|+++|+||+|+. ..
T Consensus 64 ----------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 121 (159)
T cd00154 64 ----------------------SITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQR 121 (159)
T ss_pred ----------------------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccc
Confidence 233456778999999999876322221 12333333332 368999999999996 22
Q ss_pred h-hhhh-HHHH-hcCCCceeeecccCCCCchhhHHHH
Q 011492 319 G-IMQV-SEFW-SLGFSPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 319 ~-~~~~-~~~~-~~~~~~i~vSa~~g~gi~~L~~~i~ 352 (484)
. .... ..+. ..+++++.+||+++.|+.+++.++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 122 QVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred cccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 1 1111 1122 2467899999999999999998874
No 176
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.61 E-value=6.5e-15 Score=138.07 Aligned_cols=154 Identities=16% Similarity=0.063 Sum_probs=102.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|..|||||+|++++.+... ...+.++........+.+++ ..+.+|||+|...+..
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~-------------- 76 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDN-------------- 76 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCC--CCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHH--------------
Confidence 57999999999999999999987642 22222222222222334444 3589999999754322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
....++..+|++|+|+|.+.+.+... ..+...+.....+.|+++|+||+|+...
T Consensus 77 ------------------------~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~ 132 (232)
T cd04174 77 ------------------------VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTD 132 (232)
T ss_pred ------------------------HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 22245688999999999887655443 2344555554467899999999998531
Q ss_pred ------------hhh---hhHHH-HhcCC-CceeeecccCC-CCchhhHHHHHHhh
Q 011492 319 ------------GIM---QVSEF-WSLGF-SPLPISAISGT-GTGELLDLVCSELK 356 (484)
Q Consensus 319 ------------~~~---~~~~~-~~~~~-~~i~vSa~~g~-gi~~L~~~i~~~l~ 356 (484)
... +...+ ...+. .++++||++|. |++++|..+...+.
T Consensus 133 ~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 133 LSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence 101 11122 23455 47899999998 89999998877653
No 177
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.61 E-value=5.6e-15 Score=133.07 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=98.7
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|++|+|||||++++.+... ...+.++........+.+++. .+.+|||||...+.....
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 66 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP------------ 66 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccccccccc------------
Confidence 4899999999999999999987653 222222322232333445444 367999999865433222
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++++|+|...+.+.... .+...+.....+.|+++|+||+|+.+..
T Consensus 67 --------------------------~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~ 120 (174)
T cd04135 67 --------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDP 120 (174)
T ss_pred --------------------------ccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcCh
Confidence 234678999999998765443322 2344444444689999999999986432
Q ss_pred hhh---------------hHHH-HhcCC-CceeeecccCCCCchhhHHHHHH
Q 011492 320 IMQ---------------VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~~---------------~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ...+ ...+. +++++||++|.|++++++.+...
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 121 KTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred hhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHH
Confidence 100 0111 22343 57899999999999999988654
No 178
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.61 E-value=1.5e-15 Score=133.41 Aligned_cols=150 Identities=26% Similarity=0.250 Sum_probs=96.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|.+|+|||||+++|.+.. ......++++.......+.+++ ..+.+|||||+.......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~------------- 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIR------------- 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHH-------------
Confidence 689999999999999999999876 5556666777777766667777 678999999965422111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC-CCcc--cHHHHHHHHhhcC-CCeEEEEecccCCCc
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-LTAA--DEEIADWLRKNYM-DKFIILAVNKCESPR 317 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~-~~~~--~~~~~~~l~~~~~-~~p~ilV~NK~Dl~~ 317 (484)
......++.++.++|.... .... .......+..... +.|+++|+||+|+..
T Consensus 68 -------------------------~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 68 -------------------------RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred -------------------------HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 1222344555555554322 1111 1112222222222 789999999999976
Q ss_pred hhhhhhH--HHH-hcCCCceeeecccCCCCchhhHHHH
Q 011492 318 KGIMQVS--EFW-SLGFSPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 318 ~~~~~~~--~~~-~~~~~~i~vSa~~g~gi~~L~~~i~ 352 (484)
....... .+. ....+++++||.+|.|+.+++.+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 123 AKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred chhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 4322211 111 1234789999999999999988764
No 179
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.61 E-value=6.6e-15 Score=130.55 Aligned_cols=153 Identities=18% Similarity=0.163 Sum_probs=98.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|+|||||+|+|.+..... ...+.++.......+.+.+. .+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------------- 64 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHA--------------- 64 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHH---------------
Confidence 489999999999999999999765322 11222222333333444343 588999999643221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
.....+..+|.+++|+|..++.+.... .+...+.... .+.|+++|+||+|+....
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~ 121 (162)
T cd04123 65 -----------------------LGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQR 121 (162)
T ss_pred -----------------------hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc
Confidence 112345679999999998765432222 1222233322 268999999999987532
Q ss_pred hh--hh-H-HHHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IM--QV-S-EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~--~~-~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. .. . .....+.+++++|++++.|+.++++++.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 122 VVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 11 11 1 1223466789999999999999999987643
No 180
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.61 E-value=2.6e-15 Score=125.93 Aligned_cols=104 Identities=37% Similarity=0.563 Sum_probs=82.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|+|++.+...++..+++|++.....+. .++..+.++||||+.+.... .........++
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~-----~~~~~~~~~~~ 74 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQ-----DNDGKEIRKFL 74 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHH-----HHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-eceeeEEEEeCCCCcccchh-----hHHHHHHHHHH
Confidence 5899999999999999999998888999999999988443333 46778899999999764211 11112455677
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 453 RAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
+.+..+|++++|+|+..+.++.+..+++++
T Consensus 75 ~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l 104 (116)
T PF01926_consen 75 EQISKSDLIIYVVDASNPITEDDKNILREL 104 (116)
T ss_dssp HHHCTESEEEEEEETTSHSHHHHHHHHHHH
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 788999999999999887888888887764
No 181
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.61 E-value=4.8e-15 Score=126.14 Aligned_cols=137 Identities=21% Similarity=0.282 Sum_probs=98.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.||+++|++|||||||+++|.|... ....|+...+ . =.++||||-+-...
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~-----~---~~~IDTPGEyiE~~----------------- 51 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEY-----Y---DNTIDTPGEYIENP----------------- 51 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEe-----c---ccEEECChhheeCH-----------------
Confidence 5899999999999999999998752 1222332222 1 13599999653111
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC--chhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP--RKGIM 321 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~--~~~~~ 321 (484)
++.+.++.....+|++++|.|+..+.....+.+...+ ++|+|-|+||+|+. .....
T Consensus 52 -----------------~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~ 109 (143)
T PF10662_consen 52 -----------------RFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIE 109 (143)
T ss_pred -----------------HHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHH
Confidence 1235666777899999999999988777777665443 68999999999999 33333
Q ss_pred hhHHHH-hcCC-CceeeecccCCCCchhhHHHH
Q 011492 322 QVSEFW-SLGF-SPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 322 ~~~~~~-~~~~-~~i~vSa~~g~gi~~L~~~i~ 352 (484)
....++ ..|+ .+|.+|+.+|+|+++|.++|.
T Consensus 110 ~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 110 RAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 333333 3344 579999999999999999875
No 182
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.61 E-value=1.1e-14 Score=130.89 Aligned_cols=155 Identities=16% Similarity=0.129 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|++|||||||++++++.... ....+..........+.+.+ ..+.+|||||...+..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------------- 66 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP-ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRK-------------- 66 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHH--------------
Confidence 468999999999999999999876432 11122222223333444555 4689999999754211
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
......+.++|++++|+|...+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 123 (170)
T cd04115 67 -----------------------SMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLRE 123 (170)
T ss_pred -----------------------hhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 1122445789999999998765444332 2233333321 4689999999999865
Q ss_pred hhhhh---hHH-HHhcCCCceeeeccc---CCCCchhhHHHHHHh
Q 011492 318 KGIMQ---VSE-FWSLGFSPLPISAIS---GTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~i~vSa~~---g~gi~~L~~~i~~~l 355 (484)
..... ... ....+.+++++||++ +.++.+++..+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 124 QIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred hcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 32211 111 123456889999999 677777777665543
No 183
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.61 E-value=1.1e-14 Score=128.95 Aligned_cols=150 Identities=19% Similarity=0.192 Sum_probs=99.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
||+++|++|||||||+++|++.. ......+++...........+ ..+.+||+||.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~----------------- 61 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS----------------- 61 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH-----------------
Confidence 68999999999999999999764 233344444444444455553 457899999975411
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .+...+.... .+.|+++|+||+|+....
T Consensus 62 ---------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~ 120 (160)
T cd00876 62 ---------------------AMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENER 120 (160)
T ss_pred ---------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccc
Confidence 1223456788999999997654322221 2222233322 378999999999987622
Q ss_pred h---hhhHHH-HhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 320 I---MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~---~~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
. .....+ ...+.+++++|++++.|+.++++.|...
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 121 QVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred eecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 1 111122 2345688999999999999999988754
No 184
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.60 E-value=8.2e-15 Score=139.26 Aligned_cols=152 Identities=16% Similarity=0.169 Sum_probs=99.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++++.... ..+.++..+.....+.+++ ..+.+|||+|...+...
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~-------------- 64 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAM-------------- 64 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHH--------------
Confidence 37999999999999999999876432 2333333334444455555 45789999997643211
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh----------hcCCCeEEEEe
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK----------NYMDKFIILAV 310 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~----------~~~~~p~ilV~ 310 (484)
...++..+|++|+|+|.....+.... .+...+.. ...+.|+++|+
T Consensus 65 ------------------------~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivg 120 (247)
T cd04143 65 ------------------------RRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICG 120 (247)
T ss_pred ------------------------HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEE
Confidence 11245678999999998765333222 22233322 12468999999
Q ss_pred cccCCCchhhhh---hHHHHh--cCCCceeeecccCCCCchhhHHHHHHh
Q 011492 311 NKCESPRKGIMQ---VSEFWS--LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 311 NK~Dl~~~~~~~---~~~~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
||+|+....... ...+.. .+..++++||++|.|+++++..+....
T Consensus 121 NK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 121 NKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred ECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999997522111 122222 245789999999999999999998754
No 185
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.60 E-value=5.1e-15 Score=135.28 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=100.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+||+++|.+|||||||++++.+..... ...+..........+.+++. .+.+|||||...+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---------------- 63 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSE-STKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---------------- 63 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH----------------
Confidence 489999999999999999999775321 11222222222333444443 46899999965322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .++..+.... .+.|+++|+||+|+....
T Consensus 64 ----------------------~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~ 121 (188)
T cd04125 64 ----------------------SLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNK 121 (188)
T ss_pred ----------------------hhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccc
Confidence 1223556789999999998765332221 1222233321 357899999999987432
Q ss_pred hh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 320 IM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 320 ~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.. ....+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 122 ~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 122 VVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred cCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 11 11112 2346689999999999999999998877653
No 186
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.60 E-value=7.3e-15 Score=132.43 Aligned_cols=151 Identities=17% Similarity=0.159 Sum_probs=96.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|++|||||||++++.+.... ..+.++........+.+.+. .+.+|||||.........
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------ 67 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP------------ 67 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccc------------
Confidence 58999999999999999999976432 12222222222334445443 578999999854322211
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|++++|+|.....+.... .+...+.....+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 68 --------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred --------------------------cccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 234678999999997754322222 2333344444578999999999986432
Q ss_pred hh---------------hhHHH-HhcC-CCceeeecccCCCCchhhHHHHHH
Q 011492 320 IM---------------QVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~---------------~~~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.. ....+ ...+ .+++++||++|.|+++++.++.+.
T Consensus 122 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 122 HTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred hhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHH
Confidence 10 00111 1122 368999999999999999998753
No 187
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=1.3e-14 Score=127.13 Aligned_cols=159 Identities=19% Similarity=0.200 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
-.+||+|+|.+|||||.|+.++.+.... .......-.+.....+.+.|. ++.+|||+|.++++.
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~-e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrt------------- 73 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFT-ESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRT------------- 73 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcc-hhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhh-------------
Confidence 3689999999999999999999987531 111111223333444555554 589999999976542
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
.+..++++++.+|+|+|.+...+.... .++..+.+.. .+.|.++|.||+|+..
T Consensus 74 -------------------------it~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~ 128 (205)
T KOG0084|consen 74 -------------------------ITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTE 128 (205)
T ss_pred -------------------------hhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHh
Confidence 344778999999999998764333322 2233333332 4569999999999977
Q ss_pred hhhhhh---HHH-HhcCCC-ceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 318 KGIMQV---SEF-WSLGFS-PLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 318 ~~~~~~---~~~-~~~~~~-~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
...... ..+ ...+++ ++++||+.+.++++.+..+...+....
T Consensus 129 ~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 129 KRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred heecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhc
Confidence 543222 122 345667 889999999999999998887765443
No 188
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=9.7e-15 Score=130.80 Aligned_cols=154 Identities=18% Similarity=0.140 Sum_probs=99.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|++|||||||++++.+.... ....+..+.......+.+.+. .+.+|||||...+.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------- 70 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFR-------------- 70 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH--------------
Confidence 3589999999999999999999865421 112222233344444556553 47889999975322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++++|+|...+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 71 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 71 ------------------------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 2233567889999999998654332211 2222233322 2688999999999864
Q ss_pred hhhh-h--hHHHH-hcCCCceeeecccCCCCchhhHHHHHH
Q 011492 318 KGIM-Q--VSEFW-SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 318 ~~~~-~--~~~~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.... . ...+. ....+++++||++|.|+.+++..+...
T Consensus 127 ~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 127 RREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred ccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 3221 1 11122 223578999999999999999998764
No 189
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.59 E-value=1.7e-14 Score=129.81 Aligned_cols=150 Identities=19% Similarity=0.276 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+..+|+++|++|||||||+++|.+.......++.+ .....+...+..+.+|||||.....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g----~~~~~i~~~~~~~~~~D~~G~~~~~---------------- 72 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHITPTQG----FNIKTVQSDGFKLNVWDIGGQRAIR---------------- 72 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCC----cceEEEEECCEEEEEEECCCCHHHH----------------
Confidence 36899999999999999999999875332222222 2333455667889999999974311
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+....... ...+...+.. ...+.|+++++||+|+...
T Consensus 73 ----------------------~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 73 ----------------------PYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATA 130 (173)
T ss_pred ----------------------HHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccC
Confidence 22234567899999999986532111 1112122221 1136899999999998653
Q ss_pred hhh-hhHHHHhc------CCCceeeecccCCCCchhhHHHHH
Q 011492 319 GIM-QVSEFWSL------GFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 319 ~~~-~~~~~~~~------~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
... ........ .++++++||++|.|+++++++|.+
T Consensus 131 ~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 131 APAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 321 11111111 124679999999999999999854
No 190
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.59 E-value=1.6e-14 Score=129.44 Aligned_cols=152 Identities=14% Similarity=0.142 Sum_probs=98.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.+|+++|.+|||||||++++.+... ...+..++.......+.+++ ..+.+|||||...+....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMR------------- 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhh-------------
Confidence 5899999999999999999987642 22222222222233334444 357899999987543322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~~~ 318 (484)
...+..++.+++|+|...+.+.... .+...+.. ...+.|+++|+||+|+...
T Consensus 67 -------------------------~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 67 -------------------------ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred -------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 2445678999999998764333222 12232322 1246899999999998653
Q ss_pred hhhh---hHHH-HhcC-CCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GIMQ---VSEF-WSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~~---~~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ...+ ...+ .+++++||+++.|+++++.++...+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 122 RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2211 1111 2233 5789999999999999999987643
No 191
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.59 E-value=1.2e-14 Score=149.67 Aligned_cols=148 Identities=23% Similarity=0.259 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceee------------------------------ecCCCceeeeeEEEEEeCC
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGE 210 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~ 210 (484)
...++|+++|++++|||||+++|+....... ...+|+|.+.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 3467899999999999999999984422211 1156888888888888889
Q ss_pred ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC--CCCc
Q 011492 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA--GLTA 288 (484)
Q Consensus 211 ~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~--~~~~ 288 (484)
..+.+|||||+..+. +.+...+..+|++++|+|+.. +...
T Consensus 84 ~~i~liDtpG~~~~~--------------------------------------~~~~~~~~~aD~~ilVvDa~~~~~~~~ 125 (425)
T PRK12317 84 YYFTIVDCPGHRDFV--------------------------------------KNMITGASQADAAVLVVAADDAGGVMP 125 (425)
T ss_pred eEEEEEECCCcccch--------------------------------------hhHhhchhcCCEEEEEEEcccCCCCCc
Confidence 999999999985421 122344578999999999987 5556
Q ss_pred ccHHHHHHHHhhcCCCeEEEEecccCCCchhh---h----hhHHHH-hcC-----CCceeeecccCCCCchh
Q 011492 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGI---M----QVSEFW-SLG-----FSPLPISAISGTGTGEL 347 (484)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~---~----~~~~~~-~~~-----~~~i~vSa~~g~gi~~L 347 (484)
...+.+.++... ...++++|+||+|+..... . +...+. ..+ .+++++||++|.|+.++
T Consensus 126 ~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 126 QTREHVFLARTL-GINQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred chHHHHHHHHHc-CCCeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 666666555543 2246899999999975211 0 111111 122 46899999999999874
No 192
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=137.62 Aligned_cols=164 Identities=24% Similarity=0.316 Sum_probs=119.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..-|+++|.||+|||||+++++..+ +.+.++|+||.....+.+... +..+.+-|.||+.........+
T Consensus 159 lADVGLVG~PNaGKSTlls~vS~Ak-PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GL---------- 227 (369)
T COG0536 159 LADVGLVGLPNAGKSTLLSAVSAAK-PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGL---------- 227 (369)
T ss_pred ecccccccCCCCcHHHHHHHHhhcC-CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCc----------
Confidence 5679999999999999999999876 678999999999999998874 4559999999998765544332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH----HHHHHHh---hcCCCeEEEEecccC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRK---NYMDKFIILAVNKCE 314 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~----~~~~l~~---~~~~~p~ilV~NK~D 314 (484)
..++++.+..|.++++|+|..........+ +...|.. .+.++|.+||+||+|
T Consensus 228 ---------------------G~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD 286 (369)
T COG0536 228 ---------------------GLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKID 286 (369)
T ss_pred ---------------------cHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccC
Confidence 256778899999999999986432211112 2233333 236899999999999
Q ss_pred CCch-hhhh-hHHHHh--cCCCce-eeecccCCCCchhhHHHHHHhhhc
Q 011492 315 SPRK-GIMQ-VSEFWS--LGFSPL-PISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 315 l~~~-~~~~-~~~~~~--~~~~~i-~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+... +..+ ...+.. .++..+ ++||.++.|+++|...+.+.+...
T Consensus 287 ~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 287 LPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEET 335 (369)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHh
Confidence 5432 2222 222222 233333 399999999999999998887654
No 193
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.58 E-value=6.3e-15 Score=128.39 Aligned_cols=97 Identities=31% Similarity=0.477 Sum_probs=71.6
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.||+|||||+|+|.|.+ ..++..||+|++.....+.+ .+.++.++||||+.+... ....+.+.+-+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~------~s~ee~v~~~~ 73 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSS------KSEEERVARDY 73 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSS------SSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCC------CCcHHHHHHHH
Confidence 68999999999999999999998 77999999999987777764 568999999999976532 23333444444
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 453 RAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
.....+|++++|+|+. .+. .+..++
T Consensus 74 l~~~~~D~ii~VvDa~-~l~-r~l~l~ 98 (156)
T PF02421_consen 74 LLSEKPDLIIVVVDAT-NLE-RNLYLT 98 (156)
T ss_dssp HHHTSSSEEEEEEEGG-GHH-HHHHHH
T ss_pred HhhcCCCEEEEECCCC-CHH-HHHHHH
Confidence 4467899999999986 454 444444
No 194
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=1.4e-14 Score=135.85 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=97.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.||+++|.+|||||||++++.+.... ...+..+. .+.....+.+.+ ..+.+|||||... ...
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~-~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~------------ 65 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYD-DHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTE------------ 65 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcC-ccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHH------------
Confidence 48999999999999999999765432 01111111 122233344433 5689999999861 000
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhh-hcCeEEEEeeCCCCCCccc-HHHHHHHHhh--cCCCeEEEEecccCCC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLVDGQAGLTAAD-EEIADWLRKN--YMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~-~~d~vilVvD~~~~~~~~~-~~~~~~l~~~--~~~~p~ilV~NK~Dl~ 316 (484)
...+. .+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+.
T Consensus 66 --------------------------~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 119 (221)
T cd04148 66 --------------------------DSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA 119 (221)
T ss_pred --------------------------hHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc
Confidence 01233 7999999999877543322 2233334332 1468999999999986
Q ss_pred chhhhhh---HHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 317 RKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~~~~---~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....... ..+ ...+.+++++||+++.|++++++.+...+.
T Consensus 120 ~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 120 RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 5432111 111 223567899999999999999999988775
No 195
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.58 E-value=1.7e-14 Score=129.46 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=96.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...||+++|.+|||||||++++.+.... ....+..........+.+.+. .+.+|||||...+..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------------- 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS------------- 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCC-cCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHH-------------
Confidence 3579999999999999999999876432 111222222222333444443 468899999754322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-----cCCCeEEEEeccc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-----YMDKFIILAVNKC 313 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-----~~~~p~ilV~NK~ 313 (484)
.....+..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+
T Consensus 70 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 124 (170)
T cd04116 70 -------------------------LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKN 124 (170)
T ss_pred -------------------------hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECc
Confidence 222456788999999997765333222 122222221 1357999999999
Q ss_pred CCCchhh--hhhHHH-HhcC-CCceeeecccCCCCchhhHHHHHH
Q 011492 314 ESPRKGI--MQVSEF-WSLG-FSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 314 Dl~~~~~--~~~~~~-~~~~-~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
|+..... .....+ ...+ .+++++||++|.|+.+++..+.+.
T Consensus 125 Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 125 DIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred cccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 9864321 111222 2234 368999999999999999988653
No 196
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=1.4e-14 Score=134.77 Aligned_cols=157 Identities=21% Similarity=0.258 Sum_probs=100.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..||+++|.+|||||||+++|++...... ..+....+.....+.+ .+ ..+.+|||||.....
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~-~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~-------------- 66 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV-SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR-------------- 66 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC-CCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH--------------
Confidence 36899999999999999999997653222 1122222332333333 23 358899999975422
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~ 316 (484)
......+..+|++++|+|...+.+.... .++..+.... ...|+++|+||+|+.
T Consensus 67 ------------------------~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~ 122 (211)
T cd04111 67 ------------------------SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE 122 (211)
T ss_pred ------------------------HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc
Confidence 2233566889999999998765333221 1222222221 245688999999986
Q ss_pred chhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... ....+ ...+.+++++||++|.|++++++.|.+.+.+.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 123 SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 53221 11111 23457889999999999999999998876543
No 197
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.58 E-value=1.5e-14 Score=124.91 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=109.3
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
+...++|.++|.+|+|||||+|.+...+... ........+.....+.++++ .+.+|||+|.+++....-
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~-qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~-------- 76 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQ-QYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV-------- 76 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHH-HhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc--------
Confidence 3457899999999999999999998765321 11111222333444455554 368999999987765432
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc--ccHHHHHHHHhhcC----CCeEEEEec
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKNYM----DKFIILAVN 311 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~--~~~~~~~~l~~~~~----~~p~ilV~N 311 (484)
+.++.+|..++|+|...+-+. ++.+.-++|.+..+ .-|+||+.|
T Consensus 77 ------------------------------aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGN 126 (210)
T KOG0394|consen 77 ------------------------------AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGN 126 (210)
T ss_pred ------------------------------ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcc
Confidence 456789999999998765444 44445556666442 357999999
Q ss_pred ccCCCchhh-----hhhHHH--HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 312 KCESPRKGI-----MQVSEF--WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 312 K~Dl~~~~~-----~~~~~~--~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
|+|+..... .....+ .+.++|++++||+...++.+.+..+....-..
T Consensus 127 KiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~ 180 (210)
T KOG0394|consen 127 KIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALAN 180 (210)
T ss_pred cccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhc
Confidence 999865321 122233 34568999999999999999998887655433
No 198
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.57 E-value=1.2e-14 Score=130.13 Aligned_cols=147 Identities=22% Similarity=0.186 Sum_probs=95.4
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
.|+++|.+|||||||+++|.+.......++.+ .....+.+.+..+.+|||||...+.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~~~i~D~~G~~~~~------------------- 57 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG----FTPTKLRLDKYEVCIFDLGGGANFR------------------- 57 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCccc----ceEEEEEECCEEEEEEECCCcHHHH-------------------
Confidence 47899999999999999999763222222223 3334556677889999999975321
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCCchhh-
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKGI- 320 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~~~~~- 320 (484)
.....++..+|++++|+|++.+...... ..+..+.. ...+.|+++|+||+|+.....
T Consensus 58 -------------------~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~ 118 (167)
T cd04161 58 -------------------GIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG 118 (167)
T ss_pred -------------------HHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH
Confidence 2234667899999999998765322211 12222222 124789999999999876431
Q ss_pred ---hhhHH---HH---hcCCCceeeecccC------CCCchhhHHHHH
Q 011492 321 ---MQVSE---FW---SLGFSPLPISAISG------TGTGELLDLVCS 353 (484)
Q Consensus 321 ---~~~~~---~~---~~~~~~i~vSa~~g------~gi~~L~~~i~~ 353 (484)
..... +. ...+.++++||++| .|+.+.++||..
T Consensus 119 ~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 119 ADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred HHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 11111 11 11235678999998 789999998853
No 199
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=2.1e-14 Score=133.65 Aligned_cols=155 Identities=16% Similarity=0.140 Sum_probs=100.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+|+|.+|+|||||+++|++..... ...+..........+.+.+. .+.+|||+|...+..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~-~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~-------------- 70 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRS-------------- 70 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHH--------------
Confidence 5799999999999999999999764321 11222222222333445443 478999999754221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+..+|.+++|+|...+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 71 ------------------------~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 71 ------------------------ITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred ------------------------HHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 223456779999999998765433221 122222222 246899999999998653
Q ss_pred hhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ...+ ...+++++++||+++.|+++++.++...+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~~ 168 (210)
T PLN03108 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIY 168 (210)
T ss_pred cCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2211 1112 234678899999999999999988876654
No 200
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.8e-14 Score=126.08 Aligned_cols=159 Identities=16% Similarity=0.124 Sum_probs=113.2
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
....++|+++|.+|||||+++.++..... ........-.+.....+.+++.. +++|||+|...+.
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f-~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~------------ 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSF-NTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFR------------ 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccC-cCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHH------------
Confidence 34578999999999999999999986542 22222222334444556666654 7999999987633
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcC-CCeEEEEecccCC
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCES 315 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~-~~p~ilV~NK~Dl 315 (484)
..+.+++..++.+++|+|.....+.... .+++.+.+... +.+.+||.||+|+
T Consensus 76 --------------------------ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~ 129 (207)
T KOG0078|consen 76 --------------------------TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDL 129 (207)
T ss_pred --------------------------HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccc
Confidence 4566888999999999998765444332 25555665443 7889999999998
Q ss_pred Cchhhhhh----HHHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 316 PRKGIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~~----~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..+..... .-....|+.++++||++|.|+.+.+-.+...+..
T Consensus 130 ~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078|consen 130 EEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred cccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHh
Confidence 76432211 1233468899999999999999999888877653
No 201
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.57 E-value=1.9e-14 Score=134.20 Aligned_cols=151 Identities=13% Similarity=0.077 Sum_probs=98.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++.+... ...+.++........+.+++. .+.+|||+|...+...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f--~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l-------------- 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNV-------------- 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHH--------------
Confidence 5899999999999999999997643 222222222222233445443 4788999997643221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
....+..+|++|+|+|...+.+.... .+...+.....+.|++||+||+|+....
T Consensus 66 ------------------------~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~ 121 (222)
T cd04173 66 ------------------------RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL 121 (222)
T ss_pred ------------------------hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch
Confidence 12456889999999998776443332 2333344444678999999999985421
Q ss_pred h------------hh---hHHH-HhcC-CCceeeecccCCC-CchhhHHHHHH
Q 011492 320 I------------MQ---VSEF-WSLG-FSPLPISAISGTG-TGELLDLVCSE 354 (484)
Q Consensus 320 ~------------~~---~~~~-~~~~-~~~i~vSa~~g~g-i~~L~~~i~~~ 354 (484)
. .. ...+ ...+ .+++++||+++.+ +.++|......
T Consensus 122 ~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 122 ATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred hhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHH
Confidence 0 00 1111 1234 3789999999884 99999887664
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.57 E-value=2.8e-14 Score=151.29 Aligned_cols=151 Identities=28% Similarity=0.374 Sum_probs=107.5
Q ss_pred cCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchh
Q 011492 170 GRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLA 249 (484)
Q Consensus 170 G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 249 (484)
|++|||||||+|+|+|.+ ..+++.+++|.+...+.+.+++..+.+|||||+.+....... +.
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~--e~--------------- 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE--EE--------------- 62 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchH--HH---------------
Confidence 899999999999999976 468889999999988888888889999999999765432110 00
Q ss_pred HHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHH--H
Q 011492 250 TREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSE--F 326 (484)
Q Consensus 250 ~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~--~ 326 (484)
+.+.. .....+|++++|+|++.. .........+.+. +.|+++|+||+|+.++.... ..+ .
T Consensus 63 ------------v~~~~-l~~~~aDvvI~VvDat~l--er~l~l~~ql~~~--~~PiIIVlNK~Dl~~~~~i~~d~~~L~ 125 (591)
T TIGR00437 63 ------------VARDY-LLNEKPDLVVNVVDASNL--ERNLYLTLQLLEL--GIPMILALNLVDEAEKKGIRIDEEKLE 125 (591)
T ss_pred ------------HHHHH-HhhcCCCEEEEEecCCcc--hhhHHHHHHHHhc--CCCEEEEEehhHHHHhCCChhhHHHHH
Confidence 00111 112468999999998752 1222233333333 89999999999986533211 111 2
Q ss_pred HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 327 WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 327 ~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
...+.+++++||++|.|++++++.+.+..
T Consensus 126 ~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 126 ERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 23467899999999999999999987653
No 203
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.57 E-value=7.3e-14 Score=124.42 Aligned_cols=160 Identities=25% Similarity=0.327 Sum_probs=103.0
Q ss_pred eEEEEcCCCCChhHHHHHHhCC-cceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGG-NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.|+++|.+|+|||||+|.|++. .....+..++.|..... ... ...+.++||||+....... ....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~~~D~~g~~~~~~~~-~~~~---------- 66 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNV-NDKFRLVDLPGYGYAKVSK-EVKE---------- 66 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEc-cCeEEEecCCCccccccCH-HHHH----------
Confidence 3899999999999999999943 23344555555554433 222 2389999999986432210 0000
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
.+.. ..........+++.+++++|...+.......+.+++... +.|+++|+||+|+........
T Consensus 67 -------------~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~ 130 (170)
T cd01876 67 -------------KWGK-LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAK 130 (170)
T ss_pred -------------HHHH-HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHH
Confidence 0000 111222333467889999998776666666677777765 789999999999865332111
Q ss_pred -----HHHH---hcCCCceeeecccCCCCchhhHHHHHH
Q 011492 324 -----SEFW---SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 324 -----~~~~---~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.... ....+++++||+++.|+.++++.+.++
T Consensus 131 ~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 131 ALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 1111 223478899999999999999998764
No 204
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.56 E-value=3.8e-14 Score=129.41 Aligned_cols=153 Identities=16% Similarity=0.183 Sum_probs=97.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|+|||||+++|...... .....+........+.+.+. .+.+|||+|.........
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~------------ 67 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFP--EEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRP------------ 67 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcccceEEEEEEECCEEEEEEEEECCCChhccccch------------
Confidence 48999999999999999999854322 11112222222233444443 478999999754322111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+..+|.+++++|.....+.... .+...+.....+.|+++|+||+|+....
T Consensus 68 --------------------------~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~ 121 (187)
T cd04129 68 --------------------------LSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDA 121 (187)
T ss_pred --------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCc
Confidence 234678999999998654333222 2444454444679999999999985421
Q ss_pred ----------hh---hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhh
Q 011492 320 ----------IM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ----------~~---~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.. ....+ ...+. +++++||++|.|++++++.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 122 VAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred ccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence 00 01111 22343 6899999999999999999986553
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.56 E-value=5.5e-14 Score=149.41 Aligned_cols=153 Identities=18% Similarity=0.193 Sum_probs=110.5
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcce--eeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.|+++|+.++|||||+++|+|.+.. ......+.|.+..+..+.. ++..+.+|||||+..+
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~f----------------- 64 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKF----------------- 64 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHH-----------------
Confidence 6899999999999999999985421 1223356776665544433 4567899999998542
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-EEEEecccCCCchhh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGI 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~~~ 320 (484)
.+.+...+..+|++++|+|+.++....+.+++.++... +.| +++|+||+|+.++..
T Consensus 65 ---------------------i~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv~~~~ 121 (614)
T PRK10512 65 ---------------------LSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRVDEAR 121 (614)
T ss_pred ---------------------HHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccCCHHH
Confidence 13345667889999999999988877777777766654 556 579999999976432
Q ss_pred hh-----hHHHH-hcC---CCceeeecccCCCCchhhHHHHHHhhh
Q 011492 321 MQ-----VSEFW-SLG---FSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 321 ~~-----~~~~~-~~~---~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.. ...+. ..+ .+++++||++|.|+++|++.|......
T Consensus 122 ~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 122 IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 11 11121 122 578999999999999999999876543
No 206
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.56 E-value=2.3e-14 Score=129.89 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=99.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||++++++... .....+++.........+.+ ..+.+|||||...+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~--------------- 64 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSI--------------- 64 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHH---------------
Confidence 5899999999999999999997642 22223333222233344444 3468999999754221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+..++.+++|+|.......... .+...+.+. ..+.|+++|+||+|+...
T Consensus 65 -----------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 65 -----------------------LPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred -----------------------HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhc
Confidence 112455678999999997754322211 122222221 136799999999998643
Q ss_pred hhhh--h-HH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 319 GIMQ--V-SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~~~--~-~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.... . .. ....+.+++++||+++.|+.+++.++.+.+...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 165 (180)
T cd04137 122 RQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV 165 (180)
T ss_pred CccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 2111 1 11 123456789999999999999999998876543
No 207
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.56 E-value=1.6e-14 Score=129.06 Aligned_cols=147 Identities=16% Similarity=0.109 Sum_probs=93.0
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
.|+++|.+|||||||++++.+.... ..+.. |.......+...+..+.+|||||...+.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~--~~~~p-t~g~~~~~i~~~~~~l~i~Dt~G~~~~~------------------- 58 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSL--ESVVP-TTGFNSVAIPTQDAIMELLEIGGSQNLR------------------- 58 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCc--ccccc-cCCcceEEEeeCCeEEEEEECCCCcchh-------------------
Confidence 3789999999999999999976421 11111 1112223345566789999999986432
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011492 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
.....++..+|++++|+|...+...... ..+..+.....+.|+++|+||+|+........
T Consensus 59 -------------------~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~ 119 (164)
T cd04162 59 -------------------KYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQE 119 (164)
T ss_pred -------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHH
Confidence 2223567889999999998765422111 11222222225799999999999865322111
Q ss_pred -------HHH-HhcCCCceeeeccc------CCCCchhhHHHH
Q 011492 324 -------SEF-WSLGFSPLPISAIS------GTGTGELLDLVC 352 (484)
Q Consensus 324 -------~~~-~~~~~~~i~vSa~~------g~gi~~L~~~i~ 352 (484)
..+ ...++.++++||++ ++|+.+++..+.
T Consensus 120 i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 120 IHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred HHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence 111 12345667788777 899999888764
No 208
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.56 E-value=3.8e-14 Score=124.87 Aligned_cols=147 Identities=22% Similarity=0.225 Sum_probs=93.9
Q ss_pred EEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCC
Q 011492 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (484)
Q Consensus 166 V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G 245 (484)
|+++|++|||||||+|+|.+.... ....+ |..........++..+.+|||||...+.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~-------------------- 58 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIP--TVGFNMRKVTKGNVTLKVWDLGGQPRFR-------------------- 58 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccC--CCCcceEEEEECCEEEEEEECCCCHhHH--------------------
Confidence 789999999999999999987532 11122 2222223344556779999999975321
Q ss_pred CchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHh-hcCCCeEEEEecccCCCchhhhh
Q 011492 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
......+..+|++++|+|+........ ..+..++.. ...+.|+++|+||+|+.......
T Consensus 59 ------------------~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~ 120 (159)
T cd04159 59 ------------------SMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVD 120 (159)
T ss_pred ------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHH
Confidence 223355678999999999865322111 111122211 11468999999999987543211
Q ss_pred -hHHHH------hcCCCceeeecccCCCCchhhHHHHH
Q 011492 323 -VSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 323 -~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
..... ...++++++|+++|.|++++++++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 121 ELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11111 12346799999999999999998864
No 209
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.56 E-value=1.8e-14 Score=132.54 Aligned_cols=148 Identities=17% Similarity=0.088 Sum_probs=97.4
Q ss_pred EcCCCCChhHHHHHHhCCcceeeecCCCc-eeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhhhcccCC
Q 011492 169 VGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (484)
Q Consensus 169 ~G~~~~GKSsl~n~l~~~~~~~~~~~~~~-t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G 245 (484)
+|.+|||||||+++++.... ...+..+ ........+.++ ...+.+|||+|...+....
T Consensus 1 vG~~~vGKTsLi~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~----------------- 61 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLR----------------- 61 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCC--CCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhh-----------------
Confidence 59999999999999986532 1111111 112222233333 3468999999987543322
Q ss_pred CchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhhh-hh
Q 011492 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIM-QV 323 (484)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~ 323 (484)
..++..+|++|+|+|...+.+.... .+...+.+...+.|+++|+||+|+...... ..
T Consensus 62 ---------------------~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~ 120 (200)
T smart00176 62 ---------------------DGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120 (200)
T ss_pred ---------------------HHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHH
Confidence 2456789999999998775443322 234444444457899999999998543211 11
Q ss_pred HHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 324 SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 324 ~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+ ...++.++++||++|.|+.+++.++...+.
T Consensus 121 ~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~ 154 (200)
T smart00176 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 154 (200)
T ss_pred HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122 234678899999999999999999987664
No 210
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.56 E-value=5.2e-14 Score=131.68 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=100.0
Q ss_pred eEEEEcCCCCChhHHHHHHhCCccee------e--ec-----CCCcee------------------------eeeEEEEE
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAI------V--VD-----EPGVTR------------------------DRMYGRSF 207 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~------~--~~-----~~~~t~------------------------~~~~~~~~ 207 (484)
||+++|+.++|||||+++|....... . .. ..|.|. ......+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 68999999999999999998431100 0 00 001110 00012234
Q ss_pred eCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCC
Q 011492 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAG 285 (484)
Q Consensus 208 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~ 285 (484)
..+..++++||||+..+. +.+...+ ..+|++++|+|+..+
T Consensus 81 ~~~~~i~liDtpG~~~~~--------------------------------------~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYL--------------------------------------KTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHH--------------------------------------HHHHHhhcccCCCEEEEEEECCCC
Confidence 456789999999985421 2223333 368999999999988
Q ss_pred CCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh-hhH----HHHh---------------------------cCCCc
Q 011492 286 LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM-QVS----EFWS---------------------------LGFSP 333 (484)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-~~~----~~~~---------------------------~~~~~ 333 (484)
....+..++.++... +.|+++|+||+|+.+.... ... .... ...|+
T Consensus 123 ~~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi 200 (224)
T cd04165 123 IIGMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPI 200 (224)
T ss_pred CcHHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcE
Confidence 888888888888876 8999999999998754321 111 1111 12278
Q ss_pred eeeecccCCCCchhhHHHHH
Q 011492 334 LPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 334 i~vSa~~g~gi~~L~~~i~~ 353 (484)
+.+||.+|.|+++|+..|..
T Consensus 201 ~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 201 FQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred EEeeCCCccCHHHHHHHHHh
Confidence 89999999999999988854
No 211
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=3.7e-14 Score=122.68 Aligned_cols=155 Identities=17% Similarity=0.134 Sum_probs=107.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..|+.++|..|||||+|+.+++.+....+. ....-.+.....+.++++ ++++|||+|+..+.
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~h-d~TiGvefg~r~~~id~k~IKlqiwDtaGqe~fr--------------- 69 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVH-DLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFR--------------- 69 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccc-cceeeeeeceeEEEEcCceEEEEEEecCCcHHHH---------------
Confidence 578999999999999999999987532211 111112222333455554 57999999997643
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+++.+-.+|+|+|.... +.+++.++.+.-+....+..++++.||+||...
T Consensus 70 -----------------------sv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~r 126 (216)
T KOG0098|consen 70 -----------------------SVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEAR 126 (216)
T ss_pred -----------------------HHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcc
Confidence 4555778889999999998664 444555555444443478889999999999865
Q ss_pred hhhhhHH---H-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIMQVSE---F-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~~~~---~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
......+ + ...++.++.+||+++.|+++.+......+-
T Consensus 127 R~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta~~Iy 168 (216)
T KOG0098|consen 127 REVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTAKEIY 168 (216)
T ss_pred ccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHHHHHH
Confidence 4333221 2 335778889999999999999887765543
No 212
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.55 E-value=4.5e-14 Score=149.75 Aligned_cols=156 Identities=26% Similarity=0.335 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee--------eec------CCCceeeeeEEEEEe---CC--ceeeEeecccccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--------VVD------EPGVTRDRMYGRSFW---GE--HEFMLVDTGGVLN 223 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~--------~~~------~~~~t~~~~~~~~~~---~~--~~i~liDtpG~~~ 223 (484)
.++|+++|+.++|||||+++|+...... ..+ ..|.|.......+.+ ++ ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 5689999999999999999998642111 111 124555443333433 22 5689999999975
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. .....++..+|.+|+|+|+..+........+..+... +
T Consensus 83 F~--------------------------------------~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~--~ 122 (595)
T TIGR01393 83 FS--------------------------------------YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN--D 122 (595)
T ss_pred HH--------------------------------------HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc--C
Confidence 32 2334567889999999999887766655444433333 7
Q ss_pred CeEEEEecccCCCchhhhhhH-HHH-hcCC---CceeeecccCCCCchhhHHHHHHhhhc
Q 011492 304 KFIILAVNKCESPRKGIMQVS-EFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~~~-~~~-~~~~---~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.|+++|+||+|+......... .+. ..++ .++++||++|.|+.+|++.+.+.++..
T Consensus 123 ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 123 LEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 899999999998643221111 111 1233 378999999999999999998887643
No 213
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.55 E-value=5.4e-14 Score=124.69 Aligned_cols=144 Identities=17% Similarity=0.173 Sum_probs=94.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.||+++|.+|||||||+++++...... ..+. +.......+.+++ ..+.+|||+|... .
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~--~~~~-~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~------------ 60 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQ--LESP-EGGRFKKEVLVDGQSHLLLIRDEGGAPD-----A------------ 60 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCC--CCCC-CccceEEEEEECCEEEEEEEEECCCCCc-----h------------
Confidence 479999999999999999887654221 1221 2222234456666 3478999999842 0
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc-
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR- 317 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~- 317 (484)
.....+|++++|+|.+...+.... .++..+.... .+.|+++|.||.|+..
T Consensus 61 --------------------------~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~ 114 (158)
T cd04103 61 --------------------------QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISES 114 (158)
T ss_pred --------------------------hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhc
Confidence 223568999999998876555442 3334443322 4679999999999742
Q ss_pred -hhhhhh---HHHH-h-cCCCceeeecccCCCCchhhHHHHH
Q 011492 318 -KGIMQV---SEFW-S-LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 318 -~~~~~~---~~~~-~-~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
...... ..+. . .++.++++||++|.|+++++..+.+
T Consensus 115 ~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 115 NPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHh
Confidence 111111 1222 2 2468899999999999999988864
No 214
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.55 E-value=4.3e-14 Score=132.50 Aligned_cols=164 Identities=23% Similarity=0.266 Sum_probs=111.3
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch-hhhhhHHHHhc--CCCceeeec--
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK-GIMQVSEFWSL--GFSPLPISA-- 338 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~-~~~~~~~~~~~--~~~~i~vSa-- 338 (484)
+.+...+...|++|-|-|++-|++.....+.+++. .++.|||+||+||.+. .......+... ...++..++
T Consensus 38 r~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~~ 113 (335)
T KOG2485|consen 38 RAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCNK 113 (335)
T ss_pred HHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhhh
Confidence 45556678899999999999999998877666553 6889999999999883 32222222221 123333333
Q ss_pred ccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhc-----CcceeecCCCCceeccccee
Q 011492 339 ISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVG-----EDRTIVSPISGTTRDAIDTE 413 (484)
Q Consensus 339 ~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg-----~~~~~~~~~~gtt~~~~~~~ 413 (484)
....++..++..+.....+... .........++.++|.||+|||||+|++.. .+.+.+++.||.|+.+...
T Consensus 114 ~~~~~v~~l~~il~~~~~~l~r---~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~- 189 (335)
T KOG2485|consen 114 DCNKQVSPLLKILTILSEELVR---FIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER- 189 (335)
T ss_pred hhhhccccHHHHHHHHHHHHHH---hhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-
Confidence 3344466665554433322111 111123456899999999999999999763 4677899999999988663
Q ss_pred eecCCCCcEEEEEcCCCccCcc
Q 011492 414 FTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 414 ~~~~~g~~i~liDTPG~~~~~~ 435 (484)
+.......++++||||+..|..
T Consensus 190 iri~~rp~vy~iDTPGil~P~I 211 (335)
T KOG2485|consen 190 IRISHRPPVYLIDTPGILVPSI 211 (335)
T ss_pred eEeccCCceEEecCCCcCCCCC
Confidence 3334567899999999988754
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.55 E-value=5.4e-14 Score=148.78 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=112.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceee---------------ecCCCceeeeeEEEEEeCCceeeEeeccccccccCCC
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQ 228 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~ 228 (484)
++|+|+|+.++|||||+++|+.....+. ....+.|.......+.+.+..+.+|||||+.++.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~--- 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG--- 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---
Confidence 5799999999999999999985321110 1123566666666788899999999999996532
Q ss_pred chhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEE
Q 011492 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (484)
Q Consensus 229 ~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~il 308 (484)
.....++..+|.+++|+|+..+.......++..+... +.|+++
T Consensus 79 -----------------------------------~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~--~ip~IV 121 (594)
T TIGR01394 79 -----------------------------------GEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL--GLKPIV 121 (594)
T ss_pred -----------------------------------HHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC--CCCEEE
Confidence 2345677889999999999887666666666666654 789999
Q ss_pred EecccCCCchhhhh----hHHHH--------hcCCCceeeecccCC----------CCchhhHHHHHHhhhc
Q 011492 309 AVNKCESPRKGIMQ----VSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (484)
Q Consensus 309 V~NK~Dl~~~~~~~----~~~~~--------~~~~~~i~vSa~~g~----------gi~~L~~~i~~~l~~~ 358 (484)
|+||+|+....... ...++ ...++++++||++|. |+..|++.+.+.++..
T Consensus 122 viNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 122 VINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred EEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 99999986532211 11111 124688999999996 6888888888877643
No 216
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.54 E-value=5.8e-14 Score=126.71 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=105.0
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....+|+++|..|+||||+++.|.........+ |.......+.+.+..+.+||.+|.......++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~p----T~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~----------- 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIP----TIGFNIEEIKYKGYSLTIWDLGGQESFRPLWK----------- 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEE----ESSEEEEEEEETTEEEEEEEESSSGGGGGGGG-----------
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCc----ccccccceeeeCcEEEEEEeccccccccccce-----------
Confidence 346799999999999999999999765333333 44555566778899999999999876555544
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC--cccHHHHHHHHh-hcCCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT--AADEEIADWLRK-NYMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~--~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~ 317 (484)
.++..+|.+|||+|+.+... .....+...+.. ...+.|+++++||.|+..
T Consensus 77 ---------------------------~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~ 129 (175)
T PF00025_consen 77 ---------------------------SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD 129 (175)
T ss_dssp ---------------------------GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT
T ss_pred ---------------------------eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC
Confidence 33467899999999875321 111122222322 235799999999999875
Q ss_pred hhhhhh----HHHH----hcCCCceeeecccCCCCchhhHHHHHH
Q 011492 318 KGIMQV----SEFW----SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 318 ~~~~~~----~~~~----~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...... .... ...+.++.+||.+|.|+.+.+++|.+.
T Consensus 130 ~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 130 AMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp SSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred cchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence 322111 1111 123457899999999999999999765
No 217
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.54 E-value=7.3e-14 Score=130.74 Aligned_cols=142 Identities=21% Similarity=0.204 Sum_probs=94.7
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcce------------------------------eeecCCCceeeeeEEEEEeCCceee
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEHEFM 214 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~~i~ 214 (484)
+|+++|++++|||||+.+|+..... ......++|.+.....+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999998632100 0111346777777778888999999
Q ss_pred EeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC-------CC
Q 011492 215 LVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG-------LT 287 (484)
Q Consensus 215 liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~-------~~ 287 (484)
+|||||+..+. ......+..+|++++|+|+..+ ..
T Consensus 81 liDtpG~~~~~--------------------------------------~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 81 ILDAPGHRDFV--------------------------------------PNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred EEECCChHHHH--------------------------------------HHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 99999985321 2334566789999999999874 22
Q ss_pred cccHHHHHHHHhhcCCCeEEEEecccCCCch----h-h---hhhHH--HHhc-----CCCceeeecccCCCCc
Q 011492 288 AADEEIADWLRKNYMDKFIILAVNKCESPRK----G-I---MQVSE--FWSL-----GFSPLPISAISGTGTG 345 (484)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~----~-~---~~~~~--~~~~-----~~~~i~vSa~~g~gi~ 345 (484)
.........+... ..+|+++|+||+|+... . . ..... +... .++++++||++|.|+.
T Consensus 123 ~~~~~~~~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 123 GQTREHALLARTL-GVKQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cchHHHHHHHHHc-CCCeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 2333333333322 23688999999999731 1 1 11111 1122 2568999999999987
No 218
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.53 E-value=1e-13 Score=146.62 Aligned_cols=152 Identities=20% Similarity=0.264 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCC-CceeeeeEEEE------------------EeCCceeeEeecccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP-GVTRDRMYGRS------------------FWGEHEFMLVDTGGV 221 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~-~~t~~~~~~~~------------------~~~~~~i~liDtpG~ 221 (484)
.+.+.|+++|++|+|||||+|+|++.... ...+ +.|.+...... .+.-..+++|||||+
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 35789999999999999999999976421 2222 22222111000 000113789999998
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011492 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
..+.. .....+..+|++++|+|+..+......+.+.++...
T Consensus 82 e~f~~--------------------------------------~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~- 122 (586)
T PRK04004 82 EAFTN--------------------------------------LRKRGGALADIAILVVDINEGFQPQTIEAINILKRR- 122 (586)
T ss_pred HHHHH--------------------------------------HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-
Confidence 65321 122455789999999999887766666666666654
Q ss_pred CCCeEEEEecccCCCchhh------------------hh--------hH-HHHh---------------cCCCceeeecc
Q 011492 302 MDKFIILAVNKCESPRKGI------------------MQ--------VS-EFWS---------------LGFSPLPISAI 339 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~~~~~------------------~~--------~~-~~~~---------------~~~~~i~vSa~ 339 (484)
+.|+++++||+|+..... .. .. .+.. ...+++++||+
T Consensus 123 -~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~ 201 (586)
T PRK04004 123 -KTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAK 201 (586)
T ss_pred -CCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCC
Confidence 899999999999852100 00 00 0011 12468999999
Q ss_pred cCCCCchhhHHHHHH
Q 011492 340 SGTGTGELLDLVCSE 354 (484)
Q Consensus 340 ~g~gi~~L~~~i~~~ 354 (484)
+|.|+++|++.+...
T Consensus 202 tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 202 TGEGIPDLLMVLAGL 216 (586)
T ss_pred CCCChHHHHHHHHHH
Confidence 999999998887643
No 219
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.53 E-value=2.7e-15 Score=130.74 Aligned_cols=91 Identities=33% Similarity=0.438 Sum_probs=63.5
Q ss_pred HHHHhcCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC
Q 011492 324 SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS 403 (484)
Q Consensus 324 ~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~ 403 (484)
..+...+++++.+|+.++.|+++|.+.+.. ..++++|++|||||||+|+|++...+.++++.
T Consensus 6 ~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------------------k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is 67 (161)
T PF03193_consen 6 EQYEKLGYPVFFISAKTGEGIEELKELLKG------------------KTSVLLGQSGVGKSSLINALLPEAKQKTGEIS 67 (161)
T ss_dssp HHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------------------SEEEEECSTTSSHHHHHHHHHTSS----S---
T ss_pred HHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------------------CEEEEECCCCCCHHHHHHHHHhhcchhhhhhh
Confidence 346678999999999999999999888743 47899999999999999999999877776554
Q ss_pred -------CceecccceeeecCCCCcEEEEEcCCCccCccc
Q 011492 404 -------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 404 -------gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~ 436 (484)
.|||......+ . ....||||||++++.++
T Consensus 68 ~~~~rGkHTTt~~~l~~l--~--~g~~iIDTPGf~~~~l~ 103 (161)
T PF03193_consen 68 EKTGRGKHTTTHRELFPL--P--DGGYIIDTPGFRSFGLW 103 (161)
T ss_dssp -----------SEEEEEE--T--TSEEEECSHHHHT--GC
T ss_pred cccCCCcccCCCeeEEec--C--CCcEEEECCCCCccccc
Confidence 46666554443 2 34599999999998875
No 220
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=5.1e-14 Score=130.13 Aligned_cols=166 Identities=19% Similarity=0.188 Sum_probs=121.6
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.....+|+|+|.+|+|||||+|+|++.+...+...+..+.........+++..+++|||||+++....+..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~-------- 107 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEH-------- 107 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHH--------
Confidence 344678999999999999999999977655566555445444444456677889999999998755443222
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.+..+..+...|++++++++.++.-..+..+++-+.....++++++++|.+|...+.
T Consensus 108 -----------------------r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~ 164 (296)
T COG3596 108 -----------------------RQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPG 164 (296)
T ss_pred -----------------------HHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccc
Confidence 245667788899999999999988888888887776655579999999999965431
Q ss_pred -------------hhhhH--------HHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 -------------IMQVS--------EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 -------------~~~~~--------~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+.+.. ++...-.|++.++...++|++.|...+...++
T Consensus 165 ~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 165 REWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11111 11222236777888999999999999888765
No 221
>PRK10218 GTP-binding protein; Provisional
Probab=99.53 E-value=1e-13 Score=146.38 Aligned_cols=157 Identities=18% Similarity=0.244 Sum_probs=112.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceee---------------ecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIV---------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~---------------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
...+|+++|+.++|||||+++|+.....+. ....+.|.......+.+++..+.+|||||+.++.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~- 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG- 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH-
Confidence 367899999999999999999986321111 1234566666666777888999999999986532
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (484)
.....++..+|.+++|+|+..+.......++..+... +.|.
T Consensus 83 -------------------------------------~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~--gip~ 123 (607)
T PRK10218 83 -------------------------------------GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY--GLKP 123 (607)
T ss_pred -------------------------------------HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc--CCCE
Confidence 2334667899999999999887666665666655554 8899
Q ss_pred EEEecccCCCchhhhh----hHHHH--------hcCCCceeeecccCC----------CCchhhHHHHHHhhhc
Q 011492 307 ILAVNKCESPRKGIMQ----VSEFW--------SLGFSPLPISAISGT----------GTGELLDLVCSELKKV 358 (484)
Q Consensus 307 ilV~NK~Dl~~~~~~~----~~~~~--------~~~~~~i~vSa~~g~----------gi~~L~~~i~~~l~~~ 358 (484)
++|+||+|+....... ..... ...+|++++||++|. |+..|++.+..+++..
T Consensus 124 IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 124 IVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred EEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 9999999986532211 11111 134688999999998 4677888888777643
No 222
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.52 E-value=1.2e-13 Score=146.63 Aligned_cols=157 Identities=24% Similarity=0.296 Sum_probs=107.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee--------e------ecCCCceeeeeEEEEEeC-----CceeeEeeccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--------V------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVL 222 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~--------~------~~~~~~t~~~~~~~~~~~-----~~~i~liDtpG~~ 222 (484)
..++|+|+|+.++|||||+++|+...... . ....+.|.......+.|. +..+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 46799999999999999999997532111 1 012344544433344442 4568999999997
Q ss_pred cccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC
Q 011492 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (484)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~ 302 (484)
++. .....++..+|.+|+|+|+..+........+.++...
T Consensus 86 dF~--------------------------------------~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~-- 125 (600)
T PRK05433 86 DFS--------------------------------------YEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-- 125 (600)
T ss_pred HHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--
Confidence 532 2234567889999999999887766655544444443
Q ss_pred CCeEEEEecccCCCchhhhhhH-HHH-hcCC---CceeeecccCCCCchhhHHHHHHhhhc
Q 011492 303 DKFIILAVNKCESPRKGIMQVS-EFW-SLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~~~~~~-~~~-~~~~---~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+.|+++|+||+|+......... .+. ..++ .++++||++|.|+.+|++.+.+.++..
T Consensus 126 ~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 126 DLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 7899999999998653221111 111 1233 378999999999999999998887643
No 223
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.52 E-value=6.3e-14 Score=128.55 Aligned_cols=151 Identities=17% Similarity=0.099 Sum_probs=94.1
Q ss_pred CCeEEEEcCCCCChhHHHH-HHhCCcce---eeecCCCcee--eeeEEE--------EEeCC--ceeeEeeccccccccC
Q 011492 163 LPRVAIVGRPNVGKSALFN-RLVGGNRA---IVVDEPGVTR--DRMYGR--------SFWGE--HEFMLVDTGGVLNVSK 226 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n-~l~~~~~~---~~~~~~~~t~--~~~~~~--------~~~~~--~~i~liDtpG~~~~~~ 226 (484)
..||+++|..|||||||+. ++.+.... ....+.++.. +..... ..+++ ..+.+|||+|....
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~-- 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--
Confidence 3689999999999999996 55543210 1111222210 111100 12333 35899999998531
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCC
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDK 304 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~ 304 (484)
.. ..++..+|++++|+|...+.+.... .+...+.....+.
T Consensus 80 ~~--------------------------------------~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~ 121 (195)
T cd01873 80 DR--------------------------------------RFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRV 121 (195)
T ss_pred hh--------------------------------------cccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCC
Confidence 11 0245789999999998776554433 2444455444578
Q ss_pred eEEEEecccCCCch-------------------hhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHH
Q 011492 305 FIILAVNKCESPRK-------------------GIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 305 p~ilV~NK~Dl~~~-------------------~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
|+++|+||+|+... .... ... ....+.+++++||++|.|++++++.+.+
T Consensus 122 piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 122 PVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CEEEEEEchhccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 99999999998531 1111 111 1235668899999999999999988764
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.52 E-value=1.2e-13 Score=141.21 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=101.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce---------------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|++++|||||+++|++.... ......+.|.+.....+..++..+.++||||+..
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~--- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD--- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH---
Confidence 4688999999999999999999864211 0111256677665555566777899999999752
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (484)
+ .+.+...+..+|++++|+|+..+...++.+++..+... +.|
T Consensus 88 ----~-------------------------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~ 130 (409)
T CHL00071 88 ----Y-------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPN 130 (409)
T ss_pred ----H-------------------------------HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 1 13445677889999999999988877777777777665 777
Q ss_pred EEEEecccCCCchhh-hh-----hHHHH-hc-----CCCceeeecccCCC
Q 011492 306 IILAVNKCESPRKGI-MQ-----VSEFW-SL-----GFSPLPISAISGTG 343 (484)
Q Consensus 306 ~ilV~NK~Dl~~~~~-~~-----~~~~~-~~-----~~~~i~vSa~~g~g 343 (484)
+++++||+|+..... .. ...+. .. .++++++||.+|.+
T Consensus 131 iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 131 IVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred EEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 678999999986322 11 11111 11 25789999998864
No 225
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.51 E-value=1.6e-13 Score=131.97 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=87.7
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcc-----eee------------ecCCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNR-----AIV------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~-----~~~------------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
+|+++|++|+|||||+++|+.... ..+ ....+.|.......+.+++.++.++||||+..+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 489999999999999999963211 001 1234677777777888899999999999986421
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (484)
......+..+|++++|+|+..+....+..++..+... ++|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~--~~p~i 120 (270)
T cd01886 79 ------------------------------------IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY--NVPRI 120 (270)
T ss_pred ------------------------------------HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2345678889999999999888777766777777665 88999
Q ss_pred EEecccCCCch
Q 011492 308 LAVNKCESPRK 318 (484)
Q Consensus 308 lV~NK~Dl~~~ 318 (484)
+++||+|+...
T Consensus 121 vviNK~D~~~a 131 (270)
T cd01886 121 AFVNKMDRTGA 131 (270)
T ss_pred EEEECCCCCCC
Confidence 99999998753
No 226
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.51 E-value=2.9e-13 Score=127.80 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=82.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceee-----------------ecCCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIV-----------------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~-----------------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
+|+++|++|+|||||+++|+....... ....+.+.......+.+.+.++.+|||||+.++.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 489999999999999999975421110 0122334445556677888899999999996422
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (484)
.....++..+|.+++|+|+..+.......+...+... +.|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~--~~P~i 120 (237)
T cd04168 79 ------------------------------------AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL--NIPTI 120 (237)
T ss_pred ------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 2344667889999999999887766555666666654 89999
Q ss_pred EEecccCCCc
Q 011492 308 LAVNKCESPR 317 (484)
Q Consensus 308 lV~NK~Dl~~ 317 (484)
+++||+|+..
T Consensus 121 ivvNK~D~~~ 130 (237)
T cd04168 121 IFVNKIDRAG 130 (237)
T ss_pred EEEECccccC
Confidence 9999999764
No 227
>PRK12736 elongation factor Tu; Reviewed
Probab=99.50 E-value=1.6e-13 Score=139.59 Aligned_cols=155 Identities=16% Similarity=0.145 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc------e---------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|+.++|||||+++|++... . ......+.|.+.....+..++..+.++||||+..+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY-- 88 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH--
Confidence 468899999999999999999986311 0 01114566776655555556778999999998531
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (484)
.......+..+|++++|+|+..+....+.+++.++... +.|
T Consensus 89 ------------------------------------~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~ 130 (394)
T PRK12736 89 ------------------------------------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPY 130 (394)
T ss_pred ------------------------------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCE
Confidence 13344566789999999999888777777777777665 777
Q ss_pred EEEEecccCCCchh-hhhh-----HHHH-hc-----CCCceeeecccCC--------CCchhhHHHHHHhh
Q 011492 306 IILAVNKCESPRKG-IMQV-----SEFW-SL-----GFSPLPISAISGT--------GTGELLDLVCSELK 356 (484)
Q Consensus 306 ~ilV~NK~Dl~~~~-~~~~-----~~~~-~~-----~~~~i~vSa~~g~--------gi~~L~~~i~~~l~ 356 (484)
+++|+||+|+.... .... ..+. .. ..+++++||++|. ++..|++.+.+.++
T Consensus 131 ~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 131 LVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 67889999997432 1111 1111 12 2478999999983 45677777766654
No 228
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8e-14 Score=138.97 Aligned_cols=160 Identities=21% Similarity=0.238 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcc--------------eeeecCCCceeeeeEEEEEeCC---ceeeEeecccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR--------------AIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLN 223 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~---~~i~liDtpG~~~ 223 (484)
.+.++++|+-|...|||||..+|+.... -.+....|.|.......+.+.+ +.+++|||||+.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 4578899999999999999999874321 1223456788888888888877 7799999999988
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+... ..+.+..|+.+++|+|+.++...+....+....+. +
T Consensus 138 Fs~E--------------------------------------VsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--~ 177 (650)
T KOG0462|consen 138 FSGE--------------------------------------VSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--G 177 (650)
T ss_pred ccce--------------------------------------ehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--C
Confidence 6542 23567889999999999998877765544444443 8
Q ss_pred CeEEEEecccCCCchhhhhhHHHH-----hcCCCceeeecccCCCCchhhHHHHHHhhhccC
Q 011492 304 KFIILAVNKCESPRKGIMQVSEFW-----SLGFSPLPISAISGTGTGELLDLVCSELKKVEG 360 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~~~~~~-----~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~ 360 (484)
..+|.|+||+|+......+..... ...-+++.+||++|.|+.++++.|.+.++....
T Consensus 178 L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 178 LAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred CeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 899999999999875544332221 122368999999999999999999998875543
No 229
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.50 E-value=2.1e-13 Score=139.15 Aligned_cols=156 Identities=17% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee--eecCCCceeeeeEEEE--------------------E------eCCcee
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRS--------------------F------WGEHEF 213 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~--------------------~------~~~~~i 213 (484)
...+|+++|+.++|||||+++|.+..... .....+.|.......+ . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 35789999999999999999998642100 0001122222111100 0 013578
Q ss_pred eEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-CcccHH
Q 011492 214 MLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEE 292 (484)
Q Consensus 214 ~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-~~~~~~ 292 (484)
.+|||||+..+. +.+...+..+|.+++|+|+.++. .....+
T Consensus 83 ~liDtPGh~~f~--------------------------------------~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e 124 (406)
T TIGR03680 83 SFVDAPGHETLM--------------------------------------ATMLSGAALMDGALLVIAANEPCPQPQTKE 124 (406)
T ss_pred EEEECCCHHHHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccccchHH
Confidence 999999985421 33445667899999999998875 455555
Q ss_pred HHHHHHhhcCCCeEEEEecccCCCchhhh-----hhHHHHh----cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 293 IADWLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 293 ~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.+..+... ..+++++|+||+|+...... ....+.. .+++++++||++|.|+++|++++...++
T Consensus 125 ~l~~l~~~-gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 125 HLMALEII-GIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHHHHHHc-CCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 55555433 23578999999999764321 1111111 2457899999999999999999988654
No 230
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.50 E-value=1.2e-13 Score=133.54 Aligned_cols=100 Identities=32% Similarity=0.477 Sum_probs=78.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|||||||+|+|+|.+...+++.++||++....... .++.++.++||||+.... ......+...+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~~~qii~vDTPG~~~~~------~~l~~~~~~~~~ 74 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TGASQIIFIDTPGFHEKK------HSLNRLMMKEAR 74 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cCCcEEEEEECcCCCCCc------chHHHHHHHHHH
Confidence 6899999999999999999999988899999999987654443 355679999999997541 123344566677
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 453 RAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
..++.+|++++|+|+......+ ..+++
T Consensus 75 ~~l~~aDvvl~VvD~~~~~~~~-~~i~~ 101 (270)
T TIGR00436 75 SAIGGVDLILFVVDSDQWNGDG-EFVLT 101 (270)
T ss_pred HHHhhCCEEEEEEECCCCCchH-HHHHH
Confidence 8889999999999998765554 44443
No 231
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=1.1e-13 Score=116.64 Aligned_cols=156 Identities=17% Similarity=0.122 Sum_probs=105.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce--eeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT--RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
.+||+++|.+|+|||||+-++...... +...+| .+.....+.++|. ++.+|||+|.+.++...+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd---~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTp--------- 78 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFD---DLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTP--------- 78 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccC---ccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCH---------
Confidence 589999999999999999999865432 222222 3344445566664 579999999998877665
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhhc--CCCeEEEEecccCC
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNY--MDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~~--~~~p~ilV~NK~Dl 315 (484)
.+++.+..+|+|+|.+...+..... +++.+.-+. .+.-.++|.||+|.
T Consensus 79 -----------------------------SyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDk 129 (209)
T KOG0080|consen 79 -----------------------------SYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDK 129 (209)
T ss_pred -----------------------------hHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccc
Confidence 5567889999999987765554332 222222222 34556889999997
Q ss_pred Cchhhhhh---HHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 316 PRKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 316 ~~~~~~~~---~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
........ ..+ ...+.-++++||++..|+...++.+...+-+.+
T Consensus 130 es~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 130 ESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELVEKIIETP 177 (209)
T ss_pred hhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHHHHHhcCc
Confidence 64322222 122 233456789999999999999888877665433
No 232
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.49 E-value=4.2e-13 Score=125.33 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=97.2
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcc-eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
.....||+++|++|||||||+++++.... .....+.+............+...+.+|||+|...+...
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~----------- 74 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGL----------- 74 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhh-----------
Confidence 34468999999999999999976543321 111122222221111111112346889999997543211
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCc
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
....+..++.+++|+|.....+.... .+...+.....+.|+++|+||+|+..
T Consensus 75 ---------------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 75 ---------------------------RDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred ---------------------------hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 12345678999999998765433221 12233333335789999999999865
Q ss_pred hhhh-hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 318 KGIM-QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~-~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... .... ....++.++++||++|.|+++.+..+.+.+.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 128 RQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT 168 (215)
T ss_pred ccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3221 1112 2234567899999999999999988877654
No 233
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.49 E-value=1.5e-13 Score=116.46 Aligned_cols=152 Identities=20% Similarity=0.290 Sum_probs=107.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..||.++|..|+||||++++|.+.....+.+ |.........+++..+.+||..|....+..
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~lr~~--------------- 76 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTLRSY--------------- 76 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecceEEEEEEcCCcchhHHH---------------
Confidence 6799999999999999999999986443333 445555666788899999999998654333
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHH-hhcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLR-KNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~-~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
...++...|.+|+|+|..++....+ .++...|. +...+.|++++.||.|+...-
T Consensus 77 -----------------------W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l 133 (185)
T KOG0073|consen 77 -----------------------WKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGAL 133 (185)
T ss_pred -----------------------HHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcccc
Confidence 3366788999999999765433222 12222222 234678999999999987421
Q ss_pred ----hhhh---HHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 ----IMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ----~~~~---~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+... ..+ ....++++.+|+.+|+++.+-++++...+.
T Consensus 134 ~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL~~~l~ 178 (185)
T KOG0073|consen 134 SLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWLCDDLM 178 (185)
T ss_pred CHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHHHHHHH
Confidence 1111 122 345678899999999998888888877654
No 234
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.48 E-value=3e-13 Score=132.42 Aligned_cols=161 Identities=20% Similarity=0.212 Sum_probs=105.7
Q ss_pred EEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe------------------------CCceeeEeecccc
Q 011492 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------------GEHEFMLVDTGGV 221 (484)
Q Consensus 166 V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------------~~~~i~liDtpG~ 221 (484)
|+|+|.+|||||||+|+|++.. ..++++|++|.....+...+ ...++.+|||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999999999999876 47788899988887765543 2246899999999
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC---------ccc--
Q 011492 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---------AAD-- 290 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~---------~~~-- 290 (484)
........ .+..+++..++.+|++++|+|+..... ..+
T Consensus 80 v~ga~~~~-------------------------------glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~ 128 (318)
T cd01899 80 VPGAHEGK-------------------------------GLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPL 128 (318)
T ss_pred CCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHH
Confidence 64322111 122456677788888888888753100 001
Q ss_pred --H-----HHHH--------------------------------------------HHHh--------------------
Q 011492 291 --E-----EIAD--------------------------------------------WLRK-------------------- 299 (484)
Q Consensus 291 --~-----~~~~--------------------------------------------~l~~-------------------- 299 (484)
. ++.. .|..
T Consensus 129 ~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~ 208 (318)
T cd01899 129 EDIEFLENEIDMWIYGILEKNWEKIVRKADAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLAR 208 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHH
Confidence 0 0000 0000
Q ss_pred --hcCCCeEEEEecccCCCchhh-hhhHHHHhcCCCceeeecccCCCCchhhH-HHHHHhhhc
Q 011492 300 --NYMDKFIILAVNKCESPRKGI-MQVSEFWSLGFSPLPISAISGTGTGELLD-LVCSELKKV 358 (484)
Q Consensus 300 --~~~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~i~vSa~~g~gi~~L~~-~i~~~l~~~ 358 (484)
....+|+++|+||+|+..... ............++++||+.+.++.+|.+ .+.+++++.
T Consensus 209 ~~llt~KPvI~VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 209 ALRKRSKPMVIAANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred HHHhcCCcEEEEEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 013469999999999864322 11111111234689999999999999998 688888643
No 235
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.48 E-value=2.8e-13 Score=138.13 Aligned_cols=157 Identities=18% Similarity=0.141 Sum_probs=102.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcc--eeeecCCCceeeeeEEEEEe------------------C--------Cce
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFW------------------G--------EHE 212 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~------------------~--------~~~ 212 (484)
....+|+++|+.++|||||+.+|.+... .......+.|.........+ . ...
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 3468999999999999999999976411 01111223343322111111 0 257
Q ss_pred eeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-CcccH
Q 011492 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADE 291 (484)
Q Consensus 213 i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-~~~~~ 291 (484)
+.+|||||+..+ ...+...+..+|.+++|+|+..+. .....
T Consensus 87 i~liDtPG~~~f--------------------------------------~~~~~~~~~~~D~~llVVDa~~~~~~~~t~ 128 (411)
T PRK04000 87 VSFVDAPGHETL--------------------------------------MATMLSGAALMDGAILVIAANEPCPQPQTK 128 (411)
T ss_pred EEEEECCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCCCChhHH
Confidence 899999997532 133445667889999999998775 44545
Q ss_pred HHHHHHHhhcCCCeEEEEecccCCCchhhhh-----hHHHHh----cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 292 EIADWLRKNYMDKFIILAVNKCESPRKGIMQ-----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 292 ~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-----~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+..+... ...++++|+||+|+.+..... ...+.. .+++++++||++|.|+++|++.|...++
T Consensus 129 ~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 129 EHLMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 555555443 234689999999997632211 111211 2457899999999999999999988764
No 236
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.48 E-value=1.6e-13 Score=121.92 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=100.8
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
||+++|..|||||||++++.+.... .....+. .......+...+. .+.+||++|...+.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------------- 62 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFP--ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFD---------------- 62 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTT--SSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGH----------------
T ss_pred CEEEECCCCCCHHHHHHHHHhhccc--ccccccccccccccccccccccccccccccccccccc----------------
Confidence 7999999999999999999876422 1122221 3334444555444 48999999975421
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcC-CCeEEEEecccCCCchh
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~-~~p~ilV~NK~Dl~~~~ 319 (484)
......+..+|++++|+|...+.+.... .+...+..... +.|+++|.||.|+....
T Consensus 63 ----------------------~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~ 120 (162)
T PF00071_consen 63 ----------------------SLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDER 120 (162)
T ss_dssp ----------------------HHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGS
T ss_pred ----------------------ccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccc
Confidence 1122456889999999997664333222 34444444444 58999999999987632
Q ss_pred hhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 320 IMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... ... ....+.+++.+||+++.|+.+++..+.+.+
T Consensus 121 ~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 121 EVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 211 111 223457899999999999999998887654
No 237
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.48 E-value=4.5e-13 Score=136.67 Aligned_cols=144 Identities=24% Similarity=0.303 Sum_probs=100.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeee--------------------------------cCCCceeeeeEEEEEeCCc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~~~ 211 (484)
++|+++|+.++|||||+++|+........ ...+.|.+.....+.+.+.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998643211100 1224556666666777888
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
.+.++||||+..+. +.....+..+|++++|+|+..+...++.
T Consensus 81 ~~~liDtPGh~~f~--------------------------------------~~~~~~~~~aD~allVVda~~G~~~qt~ 122 (406)
T TIGR02034 81 KFIVADTPGHEQYT--------------------------------------RNMATGASTADLAVLLVDARKGVLEQTR 122 (406)
T ss_pred EEEEEeCCCHHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCccccH
Confidence 99999999985421 2333567889999999999988887777
Q ss_pred HHHHHHHhhcCCCeEEEEecccCCCchhhh------hhH-HH-HhcC---CCceeeecccCCCCch
Q 011492 292 EIADWLRKNYMDKFIILAVNKCESPRKGIM------QVS-EF-WSLG---FSPLPISAISGTGTGE 346 (484)
Q Consensus 292 ~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~------~~~-~~-~~~~---~~~i~vSa~~g~gi~~ 346 (484)
+....+... ...++++|+||+|+...... ... .+ ...+ .+++++||++|.|+.+
T Consensus 123 ~~~~~~~~~-~~~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 123 RHSYIASLL-GIRHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHc-CCCcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 766665553 23468889999998752211 111 11 1122 3689999999999986
No 238
>PRK12735 elongation factor Tu; Reviewed
Probab=99.47 E-value=3.9e-13 Score=136.80 Aligned_cols=155 Identities=19% Similarity=0.163 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC------cce---------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGG------NRA---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~------~~~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|++++|||||+++|++. ... ......+.|.+.....+..++..+.++||||+..+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f-- 88 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY-- 88 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH--
Confidence 4678999999999999999999862 100 01113466666655555556778999999998521
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (484)
...+...+..+|++++|+|+..+......+++..+... +.|.
T Consensus 89 ------------------------------------~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~--gi~~ 130 (396)
T PRK12735 89 ------------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (396)
T ss_pred ------------------------------------HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCe
Confidence 13444667789999999999887666666666666554 7786
Q ss_pred E-EEecccCCCchh-hhh-----hHHHH-hc-----CCCceeeecccCC----------CCchhhHHHHHHhh
Q 011492 307 I-LAVNKCESPRKG-IMQ-----VSEFW-SL-----GFSPLPISAISGT----------GTGELLDLVCSELK 356 (484)
Q Consensus 307 i-lV~NK~Dl~~~~-~~~-----~~~~~-~~-----~~~~i~vSa~~g~----------gi~~L~~~i~~~l~ 356 (484)
+ +++||+|+.... ... ...+. .. .++++++||.+|. ++..|++.+...++
T Consensus 131 iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 131 IVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred EEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 5 579999997432 111 11111 11 2578999999985 45667777766543
No 239
>PLN03127 Elongation factor Tu; Provisional
Probab=99.46 E-value=7.1e-13 Score=136.06 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCC------ccee---------eecCCCceeeeeEEEEEeCCceeeEeecccccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
...++|+++|+.++|||||+++|++. .... .....+.|.+.....+..++.++.++||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD-- 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence 34678999999999999999999732 1111 112367788777666666778899999999853
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011492 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
+. ..+...+..+|++++|+|+..+...++.+++.++... +.|
T Consensus 137 -----f~-------------------------------~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip 178 (447)
T PLN03127 137 -----YV-------------------------------KNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVP 178 (447)
T ss_pred -----hH-------------------------------HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCC
Confidence 11 2333455679999999999888877788888877765 788
Q ss_pred -EEEEecccCCCchhh-hhhH-----HHHh------cCCCceeeecc---cCCC-------CchhhHHHHHHhh
Q 011492 306 -IILAVNKCESPRKGI-MQVS-----EFWS------LGFSPLPISAI---SGTG-------TGELLDLVCSELK 356 (484)
Q Consensus 306 -~ilV~NK~Dl~~~~~-~~~~-----~~~~------~~~~~i~vSa~---~g~g-------i~~L~~~i~~~l~ 356 (484)
+++++||+|+..... .... .+.. ..++++++|+. +|.| +..|++.+.+.++
T Consensus 179 ~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 179 SLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred eEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 578899999975321 1111 1111 12467788775 4444 4567777776654
No 240
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.6e-13 Score=135.25 Aligned_cols=154 Identities=21% Similarity=0.277 Sum_probs=115.7
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhh
Q 011492 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
..++.|.|-|+|+...|||||+.+|.+..++ .....|.|++.--..+.+ .|..+++.||||+.-|..+.
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMR--------- 218 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMR--------- 218 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHH---------
Confidence 3447899999999999999999999987643 334566777665444433 67889999999996543211
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
.+.....|++++|+-+.++.-.+..+.+...+.. +.|+++.+||||.+.
T Consensus 219 -----------------------------aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A--~VpiVvAinKiDkp~ 267 (683)
T KOG1145|consen 219 -----------------------------ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA--NVPIVVAINKIDKPG 267 (683)
T ss_pred -----------------------------hccCccccEEEEEEEccCCccHhHHHHHHHHHhc--CCCEEEEEeccCCCC
Confidence 1344668999999999999888888888888776 999999999999876
Q ss_pred hhhhhhHH-HHhc---------CCCceeeecccCCCCchhhHHHHH
Q 011492 318 KGIMQVSE-FWSL---------GFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 318 ~~~~~~~~-~~~~---------~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
.......+ +... ...++++||++|+|++.|.+.+.-
T Consensus 268 a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILL 313 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHH
Confidence 54433222 2222 347899999999999999887654
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.46 E-value=6.5e-13 Score=137.61 Aligned_cols=148 Identities=24% Similarity=0.283 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeee--------------------------------cCCCceeeeeEEEEEeC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVV--------------------------------DEPGVTRDRMYGRSFWG 209 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~--------------------------------~~~~~t~~~~~~~~~~~ 209 (484)
..++|+++|++++|||||+++|+.....+.. ...+.|.+.....+.++
T Consensus 26 ~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 26 SLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred CceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4689999999999999999998754321111 01234455555566677
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc
Q 011492 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~ 289 (484)
+..+.++||||+..+ .+.....+..+|++++|+|+..+...+
T Consensus 106 ~~~i~~iDTPGh~~f--------------------------------------~~~~~~~l~~aD~allVVDa~~G~~~q 147 (474)
T PRK05124 106 KRKFIIADTPGHEQY--------------------------------------TRNMATGASTCDLAILLIDARKGVLDQ 147 (474)
T ss_pred CcEEEEEECCCcHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCCCcccc
Confidence 888999999997431 123334568899999999998887776
Q ss_pred cHHHHHHHHhhcCCCeEEEEecccCCCchhh--hh-h---H-HHH-hc----CCCceeeecccCCCCchhh
Q 011492 290 DEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ-V---S-EFW-SL----GFSPLPISAISGTGTGELL 348 (484)
Q Consensus 290 ~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~-~---~-~~~-~~----~~~~i~vSa~~g~gi~~L~ 348 (484)
+.+....+... ..+++++|+||+|+..... .. . . .+. .. ..+++++||++|.|+.++.
T Consensus 148 t~~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 148 TRRHSFIATLL-GIKHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred chHHHHHHHHh-CCCceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 66665555443 2357889999999974221 11 1 1 111 11 3578999999999998653
No 242
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.45 E-value=7.3e-13 Score=121.92 Aligned_cols=156 Identities=17% Similarity=0.150 Sum_probs=97.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeee-cCCC---ceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPG---VTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~-~~~~---~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
++|+++|.+|+|||||+|+|+|....... ...+ +|.... .+.. ....+.+|||||+.........+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~l------ 73 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDYL------ 73 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccCCHHHHH------
Confidence 58999999999999999999985422111 1111 122211 1111 134689999999865322211111
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
+ ...+..+|++++|.+ .+++..+..+++.+... +.|+++|+||+|+...
T Consensus 74 -------------------------~--~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~ 122 (197)
T cd04104 74 -------------------------E--EMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLS 122 (197)
T ss_pred -------------------------H--HhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh--CCCEEEEEecccchhh
Confidence 0 012456788888765 45777777888888776 7899999999998532
Q ss_pred hh----------hhhH--------HHH-h--cCC-Cceeeecc--cCCCCchhhHHHHHHhhhc
Q 011492 319 GI----------MQVS--------EFW-S--LGF-SPLPISAI--SGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~----------~~~~--------~~~-~--~~~-~~i~vSa~--~g~gi~~L~~~i~~~l~~~ 358 (484)
.. .+.. ... . ... +++.+|+. .++++..|.+.+...+++.
T Consensus 123 ~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 123 NEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 11 0111 011 1 122 57889998 6799999999998877643
No 243
>PRK00089 era GTPase Era; Reviewed
Probab=99.45 E-value=3.8e-13 Score=131.76 Aligned_cols=104 Identities=36% Similarity=0.503 Sum_probs=84.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
-.|+++|.+|+|||||+|+|+|.+...+++.++||++........ ++.+++++||||+.++. ......+...+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~~qi~~iDTPG~~~~~------~~l~~~~~~~~ 78 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DDAQIIFVDTPGIHKPK------RALNRAMNKAA 78 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CCceEEEEECCCCCCch------hHHHHHHHHHH
Confidence 479999999999999999999999888999999999876654442 45789999999997642 12334445666
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
...+..+|++++|+|+...++..+.++++.+
T Consensus 79 ~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l 109 (292)
T PRK00089 79 WSSLKDVDLVLFVVDADEKIGPGDEFILEKL 109 (292)
T ss_pred HHHHhcCCEEEEEEeCCCCCChhHHHHHHHH
Confidence 7788999999999999988999988887654
No 244
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4.9e-13 Score=118.46 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=105.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
-.+||+++|.+|+|||-|+.+++...... ......-.......+.++++ +..+|||+|+++++....
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~-~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitS---------- 81 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSL-ESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITS---------- 81 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCc-ccccceeEEEEeeceeecCcEEEEeeecccchhhhccccc----------
Confidence 36789999999999999999999765322 22222223333344555554 469999999987654332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
++++.+...++|+|++...+.... .++..|+... .+.++++|.||+||..
T Consensus 82 ----------------------------aYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 82 ----------------------------AYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred ----------------------------hhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 566888999999998765555422 2333333322 6788999999999976
Q ss_pred hhhh----hhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 318 KGIM----QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~----~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ........+...+++||..+.++.+.+..+...+-
T Consensus 134 lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l~~I~ 176 (222)
T KOG0087|consen 134 LRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVLTEIY 176 (222)
T ss_pred ccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHHHHHH
Confidence 2211 11223345678899999999999998876665543
No 245
>PRK15494 era GTPase Era; Provisional
Probab=99.45 E-value=4.1e-13 Score=133.59 Aligned_cols=103 Identities=31% Similarity=0.482 Sum_probs=84.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|||||||+|.|+|.+...+++.++||++.....+. .++.++.+|||||+.++. ......+.+.+
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~------~~l~~~~~r~~ 125 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT-LKDTQVILYDTPGIFEPK------GSLEKAMVRCA 125 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE-eCCeEEEEEECCCcCCCc------ccHHHHHHHHH
Confidence 48999999999999999999999887788889999987665554 467789999999996532 22344566777
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+..++.+|++++|+|+...+++.+.++++.
T Consensus 126 ~~~l~~aDvil~VvD~~~s~~~~~~~il~~ 155 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKSFDDITHNILDK 155 (339)
T ss_pred HHHhhhCCEEEEEEECCCCCCHHHHHHHHH
Confidence 778999999999999998899888877654
No 246
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.44 E-value=2e-12 Score=124.28 Aligned_cols=117 Identities=21% Similarity=0.273 Sum_probs=81.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-----e----------ec------CCCceeeeeEEEEEeCCceeeEeecccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-----V----------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----~----------~~------~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
.++|+|+|++|+|||||+++|+.....+ + .+ ..+.+.......+.+.+.++.+|||||+
T Consensus 2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 4689999999999999999997432111 0 00 0122333344466788899999999998
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011492 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
.++. ......+..+|.+++|+|+..+.......++..+...
T Consensus 82 ~df~--------------------------------------~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~- 122 (267)
T cd04169 82 EDFS--------------------------------------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR- 122 (267)
T ss_pred hHHH--------------------------------------HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-
Confidence 6422 2234567889999999999877655444555555443
Q ss_pred CCCeEEEEecccCCCchh
Q 011492 302 MDKFIILAVNKCESPRKG 319 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~~~~ 319 (484)
+.|+++++||+|+....
T Consensus 123 -~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 123 -GIPIITFINKLDREGRD 139 (267)
T ss_pred -CCCEEEEEECCccCCCC
Confidence 78999999999986543
No 247
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.44 E-value=2.8e-13 Score=117.59 Aligned_cols=146 Identities=22% Similarity=0.195 Sum_probs=93.6
Q ss_pred EEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhhhcccCC
Q 011492 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEG 245 (484)
Q Consensus 168 l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G 245 (484)
++|++|+|||||+|+|.+..... .....+........... .+..+.+||+||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~------------------- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP-EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS------------------- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC-cccccchhheeeEEEEECCEEEEEEEEecCChHHHHh-------------------
Confidence 57999999999999999875311 11111112222222221 256789999999864221
Q ss_pred CchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHH---HHHHhhcCCCeEEEEecccCCCchhhhh
Q 011492 246 IPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIA---DWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~---~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
.....+..+|.+++|+|...+......... ........+.|+++|+||+|+.......
T Consensus 61 -------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~ 121 (157)
T cd00882 61 -------------------LRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS 121 (157)
T ss_pred -------------------HHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH
Confidence 113456789999999998775444333221 1122233579999999999987643322
Q ss_pred hH-----HHHhcCCCceeeecccCCCCchhhHHHH
Q 011492 323 VS-----EFWSLGFSPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 323 ~~-----~~~~~~~~~i~vSa~~g~gi~~L~~~i~ 352 (484)
.. .......+++++|+.++.|+.++++++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 122 EEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 21 1223456889999999999999998874
No 248
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.44 E-value=2.6e-13 Score=127.33 Aligned_cols=186 Identities=21% Similarity=0.222 Sum_probs=125.3
Q ss_pred HhhhccccchhhhhhhhhccccccccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-C
Q 011492 131 QLIIQDETDDRKDSGKKQKKRKTTIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-G 209 (484)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~ 209 (484)
++.+.++...++.+.+..+++ ..+..+.....+.|+++|++|+|||||+++|++.. ....+..+.|.+.......+ .
T Consensus 147 rllr~kea~lrKeL~~vrrkr-~~r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aa-l~p~drLFATLDpT~h~a~Lps 224 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKR-QRRVGREGESSPVIAVVGYTNAGKSTLIKALTKAA-LYPNDRLFATLDPTLHSAHLPS 224 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhhccccCCCceEEEEeecCccHHHHHHHHHhhh-cCccchhheeccchhhhccCCC
Confidence 444555555666666655555 34444555668999999999999999999999653 23444556666666555555 4
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc
Q 011492 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~ 289 (484)
|..+.+.||.|+.+.- +..+...+ +.++..+..+|++++|+|+++|....
T Consensus 225 g~~vlltDTvGFisdL--P~~LvaAF----------------------------~ATLeeVaeadlllHvvDiShP~ae~ 274 (410)
T KOG0410|consen 225 GNFVLLTDTVGFISDL--PIQLVAAF----------------------------QATLEEVAEADLLLHVVDISHPNAEE 274 (410)
T ss_pred CcEEEEeechhhhhhC--cHHHHHHH----------------------------HHHHHHHhhcceEEEEeecCCccHHH
Confidence 5668999999997633 22222222 45667778899999999999987766
Q ss_pred cHH-HHHHHHhhcCCCe-------EEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 290 DEE-IADWLRKNYMDKF-------IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 290 ~~~-~~~~l~~~~~~~p-------~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+ .+..+.+. +.| ++-|-||+|..+...... ....+.+||++|.|++++.+.+...+.
T Consensus 275 q~e~Vl~vL~~i--gv~~~pkl~~mieVdnkiD~e~~~~e~E------~n~~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 275 QRETVLHVLNQI--GVPSEPKLQNMIEVDNKIDYEEDEVEEE------KNLDVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred HHHHHHHHHHhc--CCCcHHHHhHHHhhccccccccccCccc------cCCccccccccCccHHHHHHHHHHHhh
Confidence 554 34444443 332 456778888765432211 123678999999999999998877654
No 249
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.44 E-value=6.7e-13 Score=110.29 Aligned_cols=154 Identities=19% Similarity=0.141 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|..|+|||.|+++++..- ...+.....-.+.....+.++|. ++.+|||+|.++++.
T Consensus 7 lfkivlvgnagvgktclvrrftqgl-fppgqgatigvdfmiktvev~gekiklqiwdtagqerfrs-------------- 71 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGL-FPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRS-------------- 71 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccC-CCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHH--------------
Confidence 6799999999999999999998653 22222222334455556666664 579999999976543
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc-cHHHHHHHHhhcCC-CeEEEEecccCCCch
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA-DEEIADWLRKNYMD-KFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~-~~~~~~~l~~~~~~-~p~ilV~NK~Dl~~~ 318 (484)
.+..+++.++.+|+|+|.+...+.. -++++..+.++..+ .--|+|.||+|+.+.
T Consensus 72 ------------------------itqsyyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 72 ------------------------ITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred ------------------------HHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 3446778899999999987654443 34566666665323 335889999998765
Q ss_pred hh-hhh--HHHHh-cCCCceeeecccCCCCchhhHHHHHHh
Q 011492 319 GI-MQV--SEFWS-LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~-~~~--~~~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. .+. .++.. ....++++||+...+++.|+..+.-.+
T Consensus 128 revp~qigeefs~~qdmyfletsakea~nve~lf~~~a~rl 168 (213)
T KOG0095|consen 128 REVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLACRL 168 (213)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHHHH
Confidence 32 221 12222 233567899999999999988775544
No 250
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.44 E-value=1.3e-12 Score=134.65 Aligned_cols=146 Identities=25% Similarity=0.218 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee------------------------------eecCCCceeeeeEEEEEeCCc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------------VVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~------------------------------~~~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|+.++|||||+++|+...... .....+.|.+.....+.+++.
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~~ 85 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDKY 85 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCCe
Confidence 46789999999999999999997421110 011346777777777788888
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC---Cc
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL---TA 288 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~---~~ 288 (484)
.+.+|||||+..+ .+.+...+..+|++++|+|+..+. ..
T Consensus 86 ~i~iiDtpGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~ 127 (426)
T TIGR00483 86 EVTIVDCPGHRDF--------------------------------------IKNMITGASQADAAVLVVAVGDGEFEVQP 127 (426)
T ss_pred EEEEEECCCHHHH--------------------------------------HHHHHhhhhhCCEEEEEEECCCCCcccCC
Confidence 9999999997531 123344567899999999998873 22
Q ss_pred ccHHHHHHHHhhcCCCeEEEEecccCCCch--hhh-----hhHHHH-hcC-----CCceeeecccCCCCch
Q 011492 289 ADEEIADWLRKNYMDKFIILAVNKCESPRK--GIM-----QVSEFW-SLG-----FSPLPISAISGTGTGE 346 (484)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~--~~~-----~~~~~~-~~~-----~~~i~vSa~~g~gi~~ 346 (484)
...+...++.. ....++++|+||+|+... ... +...+. ..+ ++++++||++|.|+.+
T Consensus 128 ~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 128 QTREHAFLART-LGINQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred chHHHHHHHHH-cCCCeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 22333333332 223578899999999742 111 111121 122 4689999999999986
No 251
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.44 E-value=3.9e-13 Score=125.04 Aligned_cols=168 Identities=16% Similarity=0.228 Sum_probs=107.5
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeee-cCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
++|+|+|.+|+||||++|.|+|...+... ...+.|..+......+.|..+.++||||+.+...........+..++.++
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 47999999999999999999999865444 24466778888888899999999999999765544444444444444444
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC---CeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD---KFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~---~p~ilV~NK~Dl~~~~ 319 (484)
.+| .+++++|+... .++..+...++.+...+.. +.++||+|..|.....
T Consensus 81 ~~g---------------------------~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 81 SPG---------------------------PHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp TT----------------------------ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred cCC---------------------------CeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 444 58899999976 7777788888887775532 5688999988865532
Q ss_pred hh-hhH---------HH-HhcCCCceeeecc------cCCCCchhhHHHHHHhhhcc
Q 011492 320 IM-QVS---------EF-WSLGFSPLPISAI------SGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 320 ~~-~~~---------~~-~~~~~~~i~vSa~------~g~gi~~L~~~i~~~l~~~~ 359 (484)
.. ... .. ...+..+..++.. ....+.+|++.+.+.+.+..
T Consensus 133 ~~~~~l~~~~~~~l~~li~~c~~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 133 SLEDYLKKESNEALQELIEKCGGRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHhccCchhHhHHhhhcCCEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 21 110 11 1123334444333 23456778888877776554
No 252
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.44 E-value=3.4e-13 Score=129.45 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=75.6
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
...+|+++|++|+||||++|+|+|+.++.++...+++......... .+|..+.||||||+.+....+ . .....++
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~---e-~~~~~ik 111 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYIN---D-QAVNIIK 111 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHH---H-HHHHHHH
Confidence 3568999999999999999999999988777776655444333333 478999999999998753211 0 0011122
Q ss_pred HHHHHhhcCcEEEEEEeCc-ccccHHhhhhhhhc
Q 011492 450 RAFRAIRRSDVVALVIEAM-ACITEQADWRDHRW 482 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~-~~~~~~d~~~~~~~ 482 (484)
+. ....++|++|||.+++ .++++.|+.+++.|
T Consensus 112 ~~-l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~I 144 (313)
T TIGR00991 112 RF-LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAI 144 (313)
T ss_pred HH-hhcCCCCEEEEEeccCcccCCHHHHHHHHHH
Confidence 22 2234799999996654 48999999988764
No 253
>PRK00049 elongation factor Tu; Reviewed
Probab=99.44 E-value=8.8e-13 Score=134.09 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=106.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc------e---------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------A---------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~------~---------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|+.++|||||+++|++... . ......+.|.+.....+..++..+.++||||+..
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~--- 87 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD--- 87 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH---
Confidence 467899999999999999999986310 0 0111456777766555555677899999999842
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (484)
+ ...+...+..+|++++|+|+..+....+.+++.++... +.|.
T Consensus 88 ----f-------------------------------~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~ 130 (396)
T PRK00049 88 ----Y-------------------------------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPY 130 (396)
T ss_pred ----H-------------------------------HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCE
Confidence 1 13344567889999999999888777777777777765 7887
Q ss_pred E-EEecccCCCchh-hhhh-----HHHH-h-----cCCCceeeecccCC----------CCchhhHHHHHHh
Q 011492 307 I-LAVNKCESPRKG-IMQV-----SEFW-S-----LGFSPLPISAISGT----------GTGELLDLVCSEL 355 (484)
Q Consensus 307 i-lV~NK~Dl~~~~-~~~~-----~~~~-~-----~~~~~i~vSa~~g~----------gi~~L~~~i~~~l 355 (484)
+ +++||+|+.... .... ..+. . ...+++++||++|. |+..|++.|...+
T Consensus 131 iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 131 IVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 6 589999997432 1111 1111 1 13578999999875 3456677776654
No 254
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.43 E-value=1.3e-12 Score=133.10 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC------ccee---------eecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGG------NRAI---------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~------~~~~---------~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|+.++|||||+++|++. .... .....+.|.+.....+..++..+.+|||||+..+.
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~- 89 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV- 89 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH-
Confidence 4678999999999999999999843 1000 11135677776655555566789999999986421
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (484)
......+..+|.+++|+|+..+......+++.++... +.|.
T Consensus 90 -------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~ 130 (394)
T TIGR00485 90 -------------------------------------KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPY 130 (394)
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCE
Confidence 2334556789999999999887777777777777654 6775
Q ss_pred E-EEecccCCCchhh-hh-----hHHHH-hcC-----CCceeeecccCC
Q 011492 307 I-LAVNKCESPRKGI-MQ-----VSEFW-SLG-----FSPLPISAISGT 342 (484)
Q Consensus 307 i-lV~NK~Dl~~~~~-~~-----~~~~~-~~~-----~~~i~vSa~~g~ 342 (484)
+ +|+||+|+.+... .. ...+. ..+ ++++++||.+|.
T Consensus 131 iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 131 IVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECcccccc
Confidence 5 6899999975321 11 11111 122 578999999885
No 255
>PRK09866 hypothetical protein; Provisional
Probab=99.43 E-value=1.9e-12 Score=133.34 Aligned_cols=91 Identities=11% Similarity=0.124 Sum_probs=66.2
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh------hhhhHH-HH-hcCC---C
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG------IMQVSE-FW-SLGF---S 332 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~------~~~~~~-~~-~~~~---~ 332 (484)
+.+...+..+|+|+||+|+..+....+..+.+.+.+...+.|+++|+||+|+.+.. ...... +. ...+ .
T Consensus 250 k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~e 329 (741)
T PRK09866 250 KMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQ 329 (741)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCce
Confidence 34555789999999999998777777878888887752225999999999986421 111111 11 2222 5
Q ss_pred ceeeecccCCCCchhhHHHHHH
Q 011492 333 PLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 333 ~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
++++||++|.|++.|++.|...
T Consensus 330 IfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 330 IFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred EEEEeCCCCCCHHHHHHHHHhC
Confidence 8999999999999999998764
No 256
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.43 E-value=1.2e-12 Score=140.98 Aligned_cols=146 Identities=26% Similarity=0.343 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeec----------C----------------------CCceeeeeEEEEEeC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD----------E----------------------PGVTRDRMYGRSFWG 209 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~----------~----------------------~~~t~~~~~~~~~~~ 209 (484)
..++|+++|++++|||||+++|+.....+... . .|.|.+.....+.++
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred CeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 35689999999999999999998653222210 1 244555555666777
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc
Q 011492 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA 289 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~ 289 (484)
+.++.++||||+..+. ......+..+|++++|+|+..+....
T Consensus 103 ~~~~~liDtPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvda~~g~~~~ 144 (632)
T PRK05506 103 KRKFIVADTPGHEQYT--------------------------------------RNMVTGASTADLAIILVDARKGVLTQ 144 (632)
T ss_pred CceEEEEECCChHHHH--------------------------------------HHHHHHHHhCCEEEEEEECCCCcccc
Confidence 8889999999975311 22334578899999999998887777
Q ss_pred cHHHHHHHHhhcCCCeEEEEecccCCCc--hhhhh-h---H-HH-HhcC---CCceeeecccCCCCch
Q 011492 290 DEEIADWLRKNYMDKFIILAVNKCESPR--KGIMQ-V---S-EF-WSLG---FSPLPISAISGTGTGE 346 (484)
Q Consensus 290 ~~~~~~~l~~~~~~~p~ilV~NK~Dl~~--~~~~~-~---~-~~-~~~~---~~~i~vSa~~g~gi~~ 346 (484)
+.+....+... ..+++++|+||+|+.. ..... . . .+ ...+ .+++++||++|.|+.+
T Consensus 145 t~e~~~~~~~~-~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 145 TRRHSFIASLL-GIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred CHHHHHHHHHh-CCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 77766665554 2357889999999974 21111 1 1 11 1223 3589999999999975
No 257
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.42 E-value=7.1e-13 Score=136.64 Aligned_cols=104 Identities=46% Similarity=0.672 Sum_probs=85.2
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+.+|+++|.+|+|||||+|+|++.....+.+.+|+|++.....+.. +|..+.++||||++++. ...+.+.+
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~------~~ie~~gi 285 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD------DEVEKIGI 285 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc------cHHHHHHH
Confidence 446799999999999999999999988777889999999987776664 67889999999997532 23445556
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 449 NRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
..+...++.+|++++|+|+..+.+.++..++
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l 316 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEIL 316 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHH
Confidence 6677889999999999999888777665544
No 258
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.42 E-value=9.1e-13 Score=124.87 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=79.9
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
....+|+++|++|+|||||+|+|+|...+.++...++|+........ .+|..+.||||||+.+... +.......+
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~----~~~~~~~~~ 103 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-VDGFKLNIIDTPGLLESVM----DQRVNRKIL 103 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE-ECCeEEEEEECCCcCcchh----hHHHHHHHH
Confidence 34569999999999999999999999988888887888876665544 5788999999999976421 011112222
Q ss_pred HHHHHHh--hcCcEEEEEEeCc-ccccHHhhhhhhhc
Q 011492 449 NRAFRAI--RRSDVVALVIEAM-ACITEQADWRDHRW 482 (484)
Q Consensus 449 ~~~~~~~--~~~d~~l~V~~~~-~~~~~~d~~~~~~~ 482 (484)
..+.+.+ ...|++++|..++ .+++..|+.++++|
T Consensus 104 ~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I 140 (249)
T cd01853 104 SSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAI 140 (249)
T ss_pred HHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 2233333 3679999998765 38899998888765
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=99.42 E-value=1.7e-12 Score=133.95 Aligned_cols=142 Identities=15% Similarity=0.117 Sum_probs=100.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce---------------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA---------------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~---------------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|++++|||||+++|++.... ......+.|.+.....+..++..+.++||||+..+.
T Consensus 80 ~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~- 158 (478)
T PLN03126 80 PHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV- 158 (478)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH-
Confidence 4688999999999999999999853111 112234666666665666778899999999986421
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (484)
......+..+|++++|+|+..+...+..+++..+... +.|
T Consensus 159 -------------------------------------~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~ 199 (478)
T PLN03126 159 -------------------------------------KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPN 199 (478)
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCe
Confidence 3345667789999999999988777777777766655 777
Q ss_pred EEEEecccCCCchhh-hhh-----HHHH-h-----cCCCceeeecccCCC
Q 011492 306 IILAVNKCESPRKGI-MQV-----SEFW-S-----LGFSPLPISAISGTG 343 (484)
Q Consensus 306 ~ilV~NK~Dl~~~~~-~~~-----~~~~-~-----~~~~~i~vSa~~g~g 343 (484)
+++++||+|+..... ... ..+. . ...+++++|+.+|.+
T Consensus 200 iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 200 MVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred EEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 778999999976321 111 1111 1 145788999988753
No 260
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.41 E-value=1.4e-12 Score=108.38 Aligned_cols=155 Identities=16% Similarity=0.169 Sum_probs=108.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+.+|+|.+|+|||+|+-++.... +..+.+..+-.+.....+.+.|. ++.+|||+|.+.++.
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddt-Fs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrt-------------- 72 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDT-FSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRT-------------- 72 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcc-cccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHH--------------
Confidence 4567799999999999999988653 22222222333444555566664 478999999875432
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.+-.+.+..+.+++|+|.+.+.+..+. .+++.++.+....|-++|.||.|.....
T Consensus 73 ------------------------itstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 73 ------------------------ITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR 128 (198)
T ss_pred ------------------------HHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccce
Confidence 333566778999999998876555432 3555566666678899999999998754
Q ss_pred hhhhH----HHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~~~----~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... .....++..|++||+...+++.++.-|.+.+-
T Consensus 129 vV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qvl 169 (198)
T KOG0079|consen 129 VVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQVL 169 (198)
T ss_pred eeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHHH
Confidence 33221 12346778999999999999999988876554
No 261
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.41 E-value=1.8e-12 Score=125.28 Aligned_cols=148 Identities=22% Similarity=0.335 Sum_probs=97.9
Q ss_pred eEEEEcCCCCChhHHHHHHhCCccee-----eec------------CCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAI-----VVD------------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~-----~~~------------~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
+|+++|++|+|||||+++|++..... +.. ..+.+.......+.+.+..+.+|||||+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~-- 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV-- 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH--
Confidence 58999999999999999987532111 000 01233344445667788899999999985421
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (484)
..+...+..+|.+++|+|+..+.......++..+... +.|++
T Consensus 79 ------------------------------------~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~--~~p~i 120 (268)
T cd04170 79 ------------------------------------GETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA--GIPRI 120 (268)
T ss_pred ------------------------------------HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEE
Confidence 3345677889999999999877666555566666554 78999
Q ss_pred EEecccCCCchhhhhhHHHH--hcCCCcee--eecccCCCCchhhHHHH
Q 011492 308 LAVNKCESPRKGIMQVSEFW--SLGFSPLP--ISAISGTGTGELLDLVC 352 (484)
Q Consensus 308 lV~NK~Dl~~~~~~~~~~~~--~~~~~~i~--vSa~~g~gi~~L~~~i~ 352 (484)
+|+||+|+............ ..+.++++ +...++.++..+.+.+.
T Consensus 121 ivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~vd~~~ 169 (268)
T cd04170 121 IFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGEGDDFKGVVDLLT 169 (268)
T ss_pred EEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccCCCceeEEEEccc
Confidence 99999998765332222222 12334444 44567777766666553
No 262
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.41 E-value=1.3e-12 Score=130.12 Aligned_cols=100 Identities=26% Similarity=0.393 Sum_probs=78.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
...+|+++|.+|+|||||+|+|++.. +.+.+.+++|++.....+...+|.++.++||||+.... +....+ ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l----~~~lie--~f~ 260 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL----PHELVA--AFR 260 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccC----CHHHHH--HHH
Confidence 34789999999999999999999987 56778889999998877777678899999999984310 011222 245
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhh
Q 011492 450 RAFRAIRRSDVVALVIEAMACITEQAD 476 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~ 476 (484)
.++..++.+|++++|+|++++...++.
T Consensus 261 ~tle~~~~ADlil~VvD~s~~~~~~~~ 287 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDPDREEQI 287 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCCchHHHH
Confidence 566778999999999999877665553
No 263
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.40 E-value=1.4e-12 Score=133.71 Aligned_cols=103 Identities=45% Similarity=0.671 Sum_probs=84.4
Q ss_pred ccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHH
Q 011492 368 ENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 368 ~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
...+.+|+++|.+|+|||||+|.|++.....+...+|||++.....+.. +|.++.+|||||+++.. ...+...
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~------~~ie~~g 272 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA------DFVERLG 272 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch------hHHHHHH
Confidence 3456799999999999999999999988777889999999987776664 67889999999997532 2334444
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHHhhh
Q 011492 448 VNRAFRAIRRSDVVALVIEAMACITEQADW 477 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~ 477 (484)
+.++...++.+|++++|+|+..+.+.++.+
T Consensus 273 i~~~~~~~~~aD~il~V~D~s~~~s~~~~~ 302 (442)
T TIGR00450 273 IEKSFKAIKQADLVIYVLDASQPLTKDDFL 302 (442)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCChhHHH
Confidence 566778889999999999999888777653
No 264
>PRK00007 elongation factor G; Reviewed
Probab=99.39 E-value=2.3e-12 Score=139.99 Aligned_cols=120 Identities=19% Similarity=0.257 Sum_probs=94.4
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhC---Ccce--eee------------cCCCceeeeeEEEEEeCCceeeEeecccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVG---GNRA--IVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~---~~~~--~~~------------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~ 223 (484)
...++|+|+|++|+|||||+++|+. .... .+. ...++|.+.....+.+.+..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3478999999999999999999963 2100 111 2456788777778889999999999999854
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ..+...+..+|++++|+|+..+....+..++..+... +
T Consensus 88 f~--------------------------------------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~ 127 (693)
T PRK00007 88 FT--------------------------------------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--K 127 (693)
T ss_pred HH--------------------------------------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--C
Confidence 21 2345677889999999999999888888888887776 8
Q ss_pred CeEEEEecccCCCchhh
Q 011492 304 KFIILAVNKCESPRKGI 320 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~ 320 (484)
+|+++++||+|+.....
T Consensus 128 ~p~iv~vNK~D~~~~~~ 144 (693)
T PRK00007 128 VPRIAFVNKMDRTGADF 144 (693)
T ss_pred CCEEEEEECCCCCCCCH
Confidence 89999999999986543
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.39 E-value=2.9e-12 Score=131.39 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=102.1
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceee--ecCCCceeeeeEEEE-------------------------------
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRS------------------------------- 206 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~--~~~~~~t~~~~~~~~------------------------------- 206 (484)
.....+|+++|+.++|||||+.+|+|...... ....|.|...-+...
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 34578999999999999999999998632110 011122211111100
Q ss_pred --EeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC
Q 011492 207 --FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (484)
Q Consensus 207 --~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~ 284 (484)
..-...+.++||||+..+ .+.+...+..+|.+++|+|+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~f--------------------------------------i~~m~~g~~~~D~alLVVda~~ 152 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDIL--------------------------------------MATMLNGAAVMDAALLLIAANE 152 (460)
T ss_pred ccccccceEeeeeCCCHHHH--------------------------------------HHHHHHHHhhCCEEEEEEECCC
Confidence 000236899999998531 2445567788999999999987
Q ss_pred C-CCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh-----HHHH----hcCCCceeeecccCCCCchhhHHHHHH
Q 011492 285 G-LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-----SEFW----SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 285 ~-~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-----~~~~----~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
+ ...+..+.+..+... .-.++++|+||+|+.+...... ..+. ...++++++||++|.|++.|++.|.+.
T Consensus 153 g~~~~qT~ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~ 231 (460)
T PTZ00327 153 SCPQPQTSEHLAAVEIM-KLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQ 231 (460)
T ss_pred CccchhhHHHHHHHHHc-CCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhh
Confidence 5 344444555444332 2346889999999985332111 1111 135689999999999999999999876
Q ss_pred hh
Q 011492 355 LK 356 (484)
Q Consensus 355 l~ 356 (484)
++
T Consensus 232 lp 233 (460)
T PTZ00327 232 IP 233 (460)
T ss_pred CC
Confidence 65
No 266
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.39 E-value=4.7e-12 Score=118.05 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=74.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceee------------e------cCCCceeeeeEEEEEeC-----CceeeEeeccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIV------------V------DEPGVTRDRMYGRSFWG-----EHEFMLVDTGG 220 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~------------~------~~~~~t~~~~~~~~~~~-----~~~i~liDtpG 220 (484)
++|+++|++|+|||||+++|++...... . ...+.+.......+.+. ...+.+|||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 3689999999999999999986432111 0 01122222222222221 25689999999
Q ss_pred cccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh
Q 011492 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~ 300 (484)
+..+. ......+..+|++++|+|+..+.......+...+...
T Consensus 81 ~~~f~--------------------------------------~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~ 122 (213)
T cd04167 81 HVNFM--------------------------------------DEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILE 122 (213)
T ss_pred CcchH--------------------------------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc
Confidence 86531 2344667899999999999877655444444444433
Q ss_pred cCCCeEEEEecccCCC
Q 011492 301 YMDKFIILAVNKCESP 316 (484)
Q Consensus 301 ~~~~p~ilV~NK~Dl~ 316 (484)
+.|+++|+||+|+.
T Consensus 123 --~~p~iiviNK~D~~ 136 (213)
T cd04167 123 --GLPIVLVINKIDRL 136 (213)
T ss_pred --CCCEEEEEECcccC
Confidence 68999999999975
No 267
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.39 E-value=6e-12 Score=127.00 Aligned_cols=88 Identities=24% Similarity=0.349 Sum_probs=66.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe---------------------C---CceeeEeecc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTG 219 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~i~liDtp 219 (484)
++|+|+|.+|+|||||+|+|++.. ..+++++++|.....+...+ + ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999999999999876 45678899998888776542 1 1357899999
Q ss_pred ccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
|+........ .+...++..++.+|++++|+|+.
T Consensus 81 Gl~~ga~~g~-------------------------------glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGR-------------------------------GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchh-------------------------------hHHHHHHHHHHHCCEEEEEEeCC
Confidence 9865332211 12346667788899999999875
No 268
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.38 E-value=4.2e-12 Score=130.63 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=98.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce------------------------------eeecCCCceeeeeEEEEEeCCc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|+.++|||||+.+|+..... ......+.|.+.....+.+++.
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4578999999999999999988642100 0011235666666666777888
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-----
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----- 286 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~----- 286 (484)
.++++||||+.++ .......+..+|.+++|+|+..+.
T Consensus 86 ~i~lIDtPGh~~f--------------------------------------~~~~~~g~~~aD~ailVVda~~G~~e~~~ 127 (446)
T PTZ00141 86 YFTIIDAPGHRDF--------------------------------------IKNMITGTSQADVAILVVASTAGEFEAGI 127 (446)
T ss_pred EEEEEECCChHHH--------------------------------------HHHHHHhhhhcCEEEEEEEcCCCceeccc
Confidence 9999999998642 134556678999999999998875
Q ss_pred --CcccHHHHHHHHhhcCCCe-EEEEecccCCC--ch--h-hh---hh-HHH-Hhc-----CCCceeeecccCCCCch
Q 011492 287 --TAADEEIADWLRKNYMDKF-IILAVNKCESP--RK--G-IM---QV-SEF-WSL-----GFSPLPISAISGTGTGE 346 (484)
Q Consensus 287 --~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~--~~--~-~~---~~-~~~-~~~-----~~~~i~vSa~~g~gi~~ 346 (484)
..+..+++..+... +.| +++++||+|.. .. . .. .. ..+ ... .++++++|+.+|.|+.+
T Consensus 128 ~~~~qT~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 128 SKDGQTREHALLAFTL--GVKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCCccHHHHHHHHHHc--CCCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 24555666665554 765 67899999943 21 1 11 11 111 111 35789999999999864
No 269
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=9e-13 Score=114.88 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=111.3
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.....+|+++|-.++||||+++.|.-.+..... .|.......+.+.+..+++||..|....+..+.
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vttv----PTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~---------- 79 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTV----PTIGFNVETVEYKNISFTVWDVGGQEKLRPLWK---------- 79 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccCC----CccccceeEEEEcceEEEEEecCCCcccccchh----------
Confidence 345679999999999999999998866544333 355666677778899999999999977666554
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHhh-cCCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRKN-YMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~~-~~~~p~ilV~NK~Dl~ 316 (484)
.++.+.+.+|||+|..+. +.....++...+... ..+.|+++..||.|+.
T Consensus 80 ----------------------------~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~ 131 (181)
T KOG0070|consen 80 ----------------------------HYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLP 131 (181)
T ss_pred ----------------------------hhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcc
Confidence 456888999999997653 222223333444332 2578999999999987
Q ss_pred chh----hhhhHH---HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 317 RKG----IMQVSE---FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~----~~~~~~---~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..- +...+. +....+.+..++|.+|.|+.+-++++.+.+.
T Consensus 132 ~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 132 GALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLK 178 (181)
T ss_pred ccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHHHHHHHHHHh
Confidence 532 222222 2233456778999999999999999988764
No 270
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.37 E-value=7.1e-12 Score=118.77 Aligned_cols=129 Identities=15% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|+|||||+|+|+|.....++...+.|.........+.+..+.+|||||+........ ..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~-~~--------- 99 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQR-VN--------- 99 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHH-HH---------
Confidence 47899999999999999999999987766777777777777777778888999999999875321110 00
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhh--hcCeEEEEeeCCC-CCCcccHHHHHHHHhhcC---CCeEEEEecccCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCES 315 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~vilVvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~Dl 315 (484)
..+...+..++. ..|++++|..... .....+..+++.+.+.+. -.++++|+||+|.
T Consensus 100 ------------------~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~ 161 (249)
T cd01853 100 ------------------RKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAAS 161 (249)
T ss_pred ------------------HHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCcc
Confidence 000111222222 4688888865433 345555667777776442 2579999999998
Q ss_pred Cch
Q 011492 316 PRK 318 (484)
Q Consensus 316 ~~~ 318 (484)
..+
T Consensus 162 ~~p 164 (249)
T cd01853 162 SPP 164 (249)
T ss_pred CCC
Confidence 654
No 271
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.37 E-value=4.6e-12 Score=137.77 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=91.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCccee-----ee------------cCCCceeeeeEEEEEeCCceeeEeecccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI-----VV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----~~------------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~ 223 (484)
.+.++|+|+|++|+|||||+|+|+...... +. ...++|.......+.+++..+.+|||||+..
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 87 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVD 87 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcc
Confidence 347899999999999999999997432111 11 1356777777888889999999999999965
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ..+..++..+|++++|+|+..+....+..++.++... +
T Consensus 88 ~~--------------------------------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~ 127 (689)
T TIGR00484 88 FT--------------------------------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY--E 127 (689)
T ss_pred hh--------------------------------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc--C
Confidence 22 1234667889999999999888777777777766665 7
Q ss_pred CeEEEEecccCCCchh
Q 011492 304 KFIILAVNKCESPRKG 319 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~ 319 (484)
.|+++|+||+|+....
T Consensus 128 ~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 128 VPRIAFVNKMDKTGAN 143 (689)
T ss_pred CCEEEEEECCCCCCCC
Confidence 8999999999998644
No 272
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=3.4e-12 Score=105.99 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=102.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..|+.++|.+.+|||||+.+.++..... .-.+.|. +.....+.. ...++.+|||+|++..+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGi--dFKvKTvyr~~kRiklQiwDTagqEryr-------------- 84 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGI--DFKVKTVYRSDKRIKLQIWDTAGQERYR-------------- 84 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeee--eEEEeEeeecccEEEEEEEecccchhhh--------------
Confidence 5699999999999999999999874211 0011111 111112222 22468999999987532
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh-cCCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
..+-++++.++.+|+++|.....+....+ +.-.+... ..+.|+|+|.||||+..
T Consensus 85 ------------------------tiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~ 140 (193)
T KOG0093|consen 85 ------------------------TITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDS 140 (193)
T ss_pred ------------------------HHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCcc
Confidence 34457789999999999976532222111 11112211 25889999999999977
Q ss_pred hhhhhhH----HHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 318 KGIMQVS----EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~~~----~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+...... -....|+.+|++||+.+.++.++++.+...+.+
T Consensus 141 eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 141 ERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHHHHHH
Confidence 5433221 133568899999999999999999988776643
No 273
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.36 E-value=5.4e-12 Score=111.07 Aligned_cols=102 Identities=47% Similarity=0.647 Sum_probs=80.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|.+.....+...+++|++....... ..+..+.++||||+.+.. ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~------~~~~~~~~~~~ 74 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID-IGGIPVRLIDTAGIRETE------DEIEKIGIERA 74 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE-eCCEEEEEEECCCcCCCc------chHHHHHHHHH
Confidence 47999999999999999999998877788889999876655554 357789999999986542 12333345566
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
....+.+|++++|+|+..+.+..+...+.
T Consensus 75 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 103 (157)
T cd04164 75 REAIEEADLVLFVIDASRGLDEEDLEILE 103 (157)
T ss_pred HHHHhhCCEEEEEEECCCCCCHHHHHHHH
Confidence 67788999999999999888887776654
No 274
>PRK12739 elongation factor G; Reviewed
Probab=99.36 E-value=6e-12 Score=136.82 Aligned_cols=118 Identities=19% Similarity=0.236 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc-----eeee------------cCCCceeeeeEEEEEeCCceeeEeeccccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVV------------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~-----~~~~------------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
..++|+|+|++|+|||||+++|+.... ..+. ...++|.+.....+.+++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 478999999999999999999974311 0111 24567887777888899999999999998541
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCC
Q 011492 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (484)
. ..+..++..+|++++|+|+..+....+..++..+... ++
T Consensus 87 ~--------------------------------------~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~--~~ 126 (691)
T PRK12739 87 T--------------------------------------IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY--GV 126 (691)
T ss_pred H--------------------------------------HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc--CC
Confidence 1 2355778889999999999988877777777777665 89
Q ss_pred eEEEEecccCCCchh
Q 011492 305 FIILAVNKCESPRKG 319 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~ 319 (484)
|+++++||+|+....
T Consensus 127 p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 127 PRIVFVNKMDRIGAD 141 (691)
T ss_pred CEEEEEECCCCCCCC
Confidence 999999999998643
No 275
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=2.2e-12 Score=127.54 Aligned_cols=164 Identities=19% Similarity=0.274 Sum_probs=120.2
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.+..+.++|+|.||||||||+|.++... ..+.+++++|+....+.+.+.-..++++||||+.+.+..+...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtrad-vevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~-------- 235 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRAD-DEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNI-------- 235 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccc-cccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhH--------
Confidence 5678899999999999999999998766 4678899999999998888888889999999998755433221
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhh-cCeEEEEeeCCCCCCcc---cHHHHHHHHhhcCCCeEEEEecccCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEE-SCVIIFLVDGQAGLTAA---DEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~-~d~vilVvD~~~~~~~~---~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
++.+++.++.. --+|+|++|.++-.... ...++..++..+.++|+|+|+||+|+
T Consensus 236 ----------------------IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 236 ----------------------IEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred ----------------------HHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 23444444443 34688999987643332 23466778888899999999999998
Q ss_pred Cchhhhhh-----HH-HHh-cCCCceeeecccCCCCchhhHHHHHH
Q 011492 316 PRKGIMQV-----SE-FWS-LGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 316 ~~~~~~~~-----~~-~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...+.... .. ... .+++++.+|+.+.+|+.++....++.
T Consensus 294 m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 294 MRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred cCccccCHHHHHHHHHHHhccCceEEEecccchhceeeHHHHHHHH
Confidence 76433221 11 122 24688999999999998876655443
No 276
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.36 E-value=6.8e-12 Score=120.54 Aligned_cols=127 Identities=13% Similarity=0.140 Sum_probs=85.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|+||||++|+|+|...+.++...+.+...........|..+.+|||||+.+........
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~--------- 106 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQA--------- 106 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHH---------
Confidence 34789999999999999999999998876666665555444444455688999999999997532111000
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCC-CCCcccHHHHHHHHhhcC---CCeEEEEecccC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQA-GLTAADEEIADWLRKNYM---DKFIILAVNKCE 314 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~-~~~~~~~~~~~~l~~~~~---~~p~ilV~NK~D 314 (484)
...+...+ ...|+++||..... .....+..+++.+...+. ..+.++|+|+.|
T Consensus 107 ----------------------~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d 164 (313)
T TIGR00991 107 ----------------------VNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ 164 (313)
T ss_pred ----------------------HHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence 01111111 25899999954322 355566677777776542 367899999999
Q ss_pred CCch
Q 011492 315 SPRK 318 (484)
Q Consensus 315 l~~~ 318 (484)
..+.
T Consensus 165 ~~~p 168 (313)
T TIGR00991 165 FSPP 168 (313)
T ss_pred cCCC
Confidence 7753
No 277
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.34 E-value=2.8e-12 Score=107.77 Aligned_cols=112 Identities=20% Similarity=0.273 Sum_probs=69.3
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcce---eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
||+++|..|||||||+++|.+.... ......+.+..............+.+||++|.........
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~------------ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQ------------ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSH------------
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceeccccc------------
Confidence 7999999999999999999987643 1122223233222222222333488999999865433321
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh---hcCCCeEEEEecccC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK---NYMDKFIILAVNKCE 314 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~---~~~~~p~ilV~NK~D 314 (484)
..+..+|++++|+|.+.+.+.... .+..++.. ...+.|+++|.||.|
T Consensus 69 --------------------------~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 --------------------------FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp --------------------------HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred --------------------------chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 236889999999998765433321 23333333 235699999999998
No 278
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.34 E-value=9.1e-12 Score=116.06 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=78.1
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeec---------------CCCceeeeeEEEEEeC----------CceeeEeec
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVD---------------EPGVTRDRMYGRSFWG----------EHEFMLVDT 218 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~~----------~~~i~liDt 218 (484)
++|+++|+.++|||||+++|+......... ..+.|.........+. +..+.+|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 379999999999999999997542111110 1122222222122232 556899999
Q ss_pred cccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHH
Q 011492 219 GGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR 298 (484)
Q Consensus 219 pG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~ 298 (484)
||+..+. ..+..++..+|.+++|+|+..+.......++..+.
T Consensus 81 PG~~~f~--------------------------------------~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~ 122 (222)
T cd01885 81 PGHVDFS--------------------------------------SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQAL 122 (222)
T ss_pred CCccccH--------------------------------------HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHH
Confidence 9997522 34557789999999999998887766666666555
Q ss_pred hhcCCCeEEEEecccCCC
Q 011492 299 KNYMDKFIILAVNKCESP 316 (484)
Q Consensus 299 ~~~~~~p~ilV~NK~Dl~ 316 (484)
.. +.|+++|+||+|+.
T Consensus 123 ~~--~~p~ilviNKiD~~ 138 (222)
T cd01885 123 KE--RVKPVLVINKIDRL 138 (222)
T ss_pred Hc--CCCEEEEEECCCcc
Confidence 44 78999999999986
No 279
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.33 E-value=4.3e-12 Score=131.13 Aligned_cols=106 Identities=24% Similarity=0.263 Sum_probs=73.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCC-CCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPI-SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~-~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|++|+||||++|+|+|+.++.+... ++||+ .+..... .+|..+.||||||+.+.... ......++.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr-~~ei~~~-idG~~L~VIDTPGL~dt~~d----q~~neeILk 191 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTS-VQEIEGL-VQGVKIRVIDTPGLKSSASD----QSKNEKILS 191 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceE-EEEEEEE-ECCceEEEEECCCCCccccc----hHHHHHHHH
Confidence 35899999999999999999999998888776 45554 4443333 47889999999999875321 112233444
Q ss_pred HHHHHhh--cCcEEEEEEeCccc-ccHHhhhhhhhc
Q 011492 450 RAFRAIR--RSDVVALVIEAMAC-ITEQADWRDHRW 482 (484)
Q Consensus 450 ~~~~~~~--~~d~~l~V~~~~~~-~~~~d~~~~~~~ 482 (484)
++...++ ++|+||+|+.+... .+.+|+.+++.|
T Consensus 192 ~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~I 227 (763)
T TIGR00993 192 SVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTI 227 (763)
T ss_pred HHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHH
Confidence 4444443 68999999987533 333677777654
No 280
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.33 E-value=8.5e-12 Score=111.63 Aligned_cols=106 Identities=55% Similarity=0.770 Sum_probs=82.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|++.....+...+++|+......+. .++..+.+|||||+.+..... ...+.+.....
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~---~~~e~~~~~~~ 78 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVE---EGIEKYSVLRT 78 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE-ECCeeEEEEECCCCccccchh---ccHHHHHHHHH
Confidence 57999999999999999999998877778888999887665554 367789999999997653211 22334444556
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
...++.+|++++|+|+..+.+.++..++..
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~ 108 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDLRIAGL 108 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHHHHHHH
Confidence 677889999999999999888877666543
No 281
>PRK13351 elongation factor G; Reviewed
Probab=99.33 E-value=1.1e-11 Score=135.03 Aligned_cols=116 Identities=18% Similarity=0.284 Sum_probs=85.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee-----------ee------cCCCceeeeeEEEEEeCCceeeEeeccccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----------~~------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
..++|+++|+.|+|||||+++|+...... .. ...+.|.......+.+.+..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 46899999999999999999997432100 00 01344555555567788889999999998642
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCC
Q 011492 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (484)
. ..+..++..+|.+++|+|+..+.......++..+... +.
T Consensus 87 ~--------------------------------------~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~--~~ 126 (687)
T PRK13351 87 T--------------------------------------GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY--GI 126 (687)
T ss_pred H--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc--CC
Confidence 2 3345677889999999999887766666666666554 78
Q ss_pred eEEEEecccCCCc
Q 011492 305 FIILAVNKCESPR 317 (484)
Q Consensus 305 p~ilV~NK~Dl~~ 317 (484)
|+++|+||+|+..
T Consensus 127 p~iiviNK~D~~~ 139 (687)
T PRK13351 127 PRLIFINKMDRVG 139 (687)
T ss_pred CEEEEEECCCCCC
Confidence 9999999999654
No 282
>PRK11058 GTPase HflX; Provisional
Probab=99.33 E-value=6.8e-12 Score=127.94 Aligned_cols=98 Identities=17% Similarity=0.232 Sum_probs=75.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
++|+++|.+|+|||||+|+|.+..++ +...+++|++.....+...++..+.++||||+..... .... .....+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp----~~lv--e~f~~t 270 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLP----HDLV--AAFKAT 270 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCC----HHHH--HHHHHH
Confidence 68999999999999999999998765 7788899999887777665556899999999843110 0112 224556
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhh
Q 011492 452 FRAIRRSDVVALVIEAMACITEQAD 476 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~ 476 (484)
...++.+|++++|+|++++...++.
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l 295 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENI 295 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHH
Confidence 6778999999999999887666654
No 283
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.32 E-value=4.7e-12 Score=127.66 Aligned_cols=89 Identities=21% Similarity=0.242 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..|+|||.||||||||+|+|.+.+. .++..|+||+......+...+++.++++||||+..... ....+....
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~-------~~~~Lg~~~ 231 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGAS-------EGAGLGIRF 231 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCcccccc-------chhhHHHHH
Confidence 3699999999999999999998764 78999999999988877665556799999999976421 111223445
Q ss_pred HHHhhcCcEEEEEEeCc
Q 011492 452 FRAIRRSDVVALVIEAM 468 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~ 468 (484)
++.++.+|++++|+|+.
T Consensus 232 l~~i~radvlL~VVD~s 248 (390)
T PRK12298 232 LKHLERCRVLLHLIDIA 248 (390)
T ss_pred HHHHHhCCEEEEEeccC
Confidence 56789999999999976
No 284
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.31 E-value=8.4e-11 Score=115.49 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=112.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee---------------eecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI---------------VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~---------------~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
...+|+|+-+...|||||++.|+...... .....|.|.-.....+.|++..+.++||||+-++..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 36789999999999999999998652111 011235666555667788999999999999976543
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI 306 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ 306 (484)
...+.+...|.+++++|+.++.-.+..-..+...+. +.+.
T Consensus 84 --------------------------------------EVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~--gL~P 123 (603)
T COG1217 84 --------------------------------------EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL--GLKP 123 (603)
T ss_pred --------------------------------------hhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc--CCCc
Confidence 233667788999999999987666655554433333 7888
Q ss_pred EEEecccCCCchhhhhh----HH--------HHhcCCCceeeecccCC----------CCchhhHHHHHHhhhcc
Q 011492 307 ILAVNKCESPRKGIMQV----SE--------FWSLGFSPLPISAISGT----------GTGELLDLVCSELKKVE 359 (484)
Q Consensus 307 ilV~NK~Dl~~~~~~~~----~~--------~~~~~~~~i~vSa~~g~----------gi~~L~~~i~~~l~~~~ 359 (484)
|+|+||+|......... .. .....+|+++.|+..|+ ++..|++.|.++++...
T Consensus 124 IVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 124 IVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 99999999876432221 11 12357899999998773 45668888888876443
No 285
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=3.8e-11 Score=104.59 Aligned_cols=154 Identities=21% Similarity=0.226 Sum_probs=111.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceee------ecCCC---ceeeeeEEEEEeCC-ceeeEeeccccccccCCCchh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIV------VDEPG---VTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~------~~~~~---~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~ 231 (484)
...+|++.|..++||||++.++.......+ ....+ +|...-.+...+.+ ..+.+++|||+.++..
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~f----- 83 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKF----- 83 (187)
T ss_pred cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHH-----
Confidence 367999999999999999999987642221 11122 56666666776666 7899999999976432
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEec
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVN 311 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~N 311 (484)
...-..+.+..+|+++|.+.+.......+++++....+ .|+++.+|
T Consensus 84 ---------------------------------m~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~-ip~vVa~N 129 (187)
T COG2229 84 ---------------------------------MWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-IPVVVAIN 129 (187)
T ss_pred ---------------------------------HHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC-CCEEEEee
Confidence 22244566899999999988877766777888877622 89999999
Q ss_pred ccCCCchhhh----hhHHHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 312 KCESPRKGIM----QVSEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 312 K~Dl~~~~~~----~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
|.|+...... +.+.......+++..+|..+++..+.+..+...
T Consensus 130 K~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 130 KQDLFDALPPEKIREALKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ccccCCCCCHHHHHHHHHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 9999764322 222222246789999999999988877776544
No 286
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.9e-12 Score=129.03 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhHhhhccccchhhhhhhhhccccccccCC-----------------CCCCCCeEEEEcCCCCChhHHHH
Q 011492 119 DAVREYSSLLSRQLIIQDETDDRKDSGKKQKKRKTTIGNV-----------------PEHLLPRVAIVGRPNVGKSALFN 181 (484)
Q Consensus 119 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~V~l~G~~~~GKSsl~n 181 (484)
.+.+.|...++.....++.+....+..++.+....+.... ......+|+++|+-++|||+|+.
T Consensus 67 saeevYG~dVE~lvqeed~Qpl~~Pli~Pv~~~k~q~~~~~~p~T~y~~~yl~~l~~~p~~irnV~l~GhLhhGKT~l~D 146 (971)
T KOG0468|consen 67 SAEEVYGEDVETLVQEEDTQPLREPLIEPVRRLKFQIHERDVPETVYDLEYLAGLMDNPERIRNVGLVGHLHHGKTALMD 146 (971)
T ss_pred ccccccCCcceeeeeccccCCcccccchhhhhhhhhhhhcccchhhhhHHHHHHhccCcceEEEEEEeeccccChhHHHH
Confidence 3444555555555556666666665555544332211111 12246789999999999999999
Q ss_pred HHhCCcceeeec----------------CCCceeeeeEEEEEe-----CCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 182 RLVGGNRAIVVD----------------EPGVTRDRMYGRSFW-----GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 182 ~l~~~~~~~~~~----------------~~~~t~~~~~~~~~~-----~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.|.+........ ..+++....-..+.. ..+-++++||||+.++.
T Consensus 147 ~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHVnF~--------------- 211 (971)
T KOG0468|consen 147 LLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHVNFS--------------- 211 (971)
T ss_pred hhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCcccch---------------
Confidence 998763211100 011122111111211 12347899999998643
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..+.+.+..+|.+++|+|+.++.......+++...+. +.|+++|+||+|.+
T Consensus 212 -----------------------DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~--~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 212 -----------------------DETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN--RLPIVVVINKVDRL 262 (971)
T ss_pred -----------------------HHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc--cCcEEEEEehhHHH
Confidence 3455788999999999999999888777777766665 89999999999953
No 287
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.31 E-value=4.4e-12 Score=118.39 Aligned_cols=98 Identities=27% Similarity=0.360 Sum_probs=78.5
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
.+..+|+++|.||+|||||.|.++|.+++.++....|||+.....+.. +.-+++++||||+........ .+...-.+
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts-~eTQlvf~DTPGlvs~~~~r~--~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITS-GETQLVFYDTPGLVSKKMHRR--HHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEec-CceEEEEecCCcccccchhhh--HHHHHHhh
Confidence 445699999999999999999999999999999999999988777664 557899999999987654321 12222224
Q ss_pred HHHHHHhhcCcEEEEEEeCcc
Q 011492 449 NRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~ 469 (484)
.....++..+|++++|+|+..
T Consensus 147 q~~~~a~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASA 167 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccC
Confidence 456678889999999999974
No 288
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=109.56 Aligned_cols=108 Identities=24% Similarity=0.217 Sum_probs=76.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+-|+++|++|||||||+|+|++++ .+.++..||.|+..-...+ + ..+.+||.||+.-..... ........++
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~---~-~~~~lVDlPGYGyAkv~k-~~~e~w~~~i 97 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV---D-DELRLVDLPGYGYAKVPK-EVKEKWKKLI 97 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe---c-CcEEEEeCCCcccccCCH-HHHHHHHHHH
Confidence 45689999999999999999999965 5899999999997643333 2 348999999986432110 0001111134
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 449 NRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
..++..=..-..+++++|+...+++.|...++++
T Consensus 98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l 131 (200)
T COG0218 98 EEYLEKRANLKGVVLLIDARHPPKDLDREMIEFL 131 (200)
T ss_pred HHHHhhchhheEEEEEEECCCCCcHHHHHHHHHH
Confidence 4444443456889999999999999999887654
No 289
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.27 E-value=1.7e-11 Score=107.96 Aligned_cols=100 Identities=37% Similarity=0.478 Sum_probs=75.7
Q ss_pred EEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHH
Q 011492 375 AIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRA 454 (484)
Q Consensus 375 ~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (484)
+++|.+|+|||||+|.|++.....+...+++|++....... .++..+.++||||+..... .............
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~------~~~~~~~~~~~~~ 73 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDE------GISKEIREQAELA 73 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE-ECCeEEEEEECCCCCCchh------HHHHHHHHHHHHH
Confidence 47899999999999999998777777888999877655554 3577899999999865311 1222334445567
Q ss_pred hhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 455 IRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 455 ~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
++.+|++++|+|+..+++..+.++.++
T Consensus 74 ~~~~d~ii~v~d~~~~~~~~~~~~~~~ 100 (157)
T cd01894 74 IEEADVILFVVDGREGLTPADEEIAKY 100 (157)
T ss_pred HHhCCEEEEEEeccccCCccHHHHHHH
Confidence 889999999999988887777665543
No 290
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.27 E-value=4.6e-12 Score=105.27 Aligned_cols=153 Identities=20% Similarity=0.158 Sum_probs=107.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..++.++|-.++|||||+|.+.... .......|.......++-+...+.+||.||...+...+
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~---~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmW-------------- 82 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQ---YLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW-------------- 82 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeecc---chhhhcccccceeEEeccCceEEEEEecCCCccHHHHH--------------
Confidence 4678899999999999999987543 22344456666666666667789999999987655433
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc--ccHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~--~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..+.+.+++++|++|+.++... ...++-.+|.+ .+.++|++++.||.|+...-
T Consensus 83 ------------------------erycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL 138 (186)
T KOG0075|consen 83 ------------------------ERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL 138 (186)
T ss_pred ------------------------HHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc
Confidence 3667889999999999875322 23334444433 23579999999999987642
Q ss_pred hhhh-HHH------HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQV-SEF------WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~~-~~~------~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ... ....+.++.+|++...+++.+++++.+..+
T Consensus 139 ~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 139 SKIALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred cHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 2111 111 112346799999999999999999987643
No 291
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.27 E-value=1.6e-11 Score=120.75 Aligned_cols=159 Identities=21% Similarity=0.278 Sum_probs=113.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce--------e------eecCCCceeeeeEEEEEeCC-----ceeeEeeccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA--------I------VVDEPGVTRDRMYGRSFWGE-----HEFMLVDTGGVL 222 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~--------~------~~~~~~~t~~~~~~~~~~~~-----~~i~liDtpG~~ 222 (484)
+.++..|+.|-..|||||..+|+..... + .....|.|...+..+..+.. +.+.++||||+.
T Consensus 8 ~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHV 87 (603)
T COG0481 8 NIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 87 (603)
T ss_pred hccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCcc
Confidence 4677889999999999999998743211 1 12234667766665555432 458999999998
Q ss_pred cccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC
Q 011492 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (484)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~ 302 (484)
++.-. ..+.+..|...++|+|++++...+.........++
T Consensus 88 DFsYE--------------------------------------VSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-- 127 (603)
T COG0481 88 DFSYE--------------------------------------VSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-- 127 (603)
T ss_pred ceEEE--------------------------------------ehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--
Confidence 75431 22567889999999999998877765544333333
Q ss_pred CCeEEEEecccCCCchhhhhhHHHH--hcCC---CceeeecccCCCCchhhHHHHHHhhhccC
Q 011492 303 DKFIILAVNKCESPRKGIMQVSEFW--SLGF---SPLPISAISGTGTGELLDLVCSELKKVEG 360 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~~~~~~~~~--~~~~---~~i~vSa~~g~gi~~L~~~i~~~l~~~~~ 360 (484)
+..++-|+||+||+.....+..... -.|+ ..+.+||++|.|++++++.|.+.++....
T Consensus 128 ~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 128 NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 7889999999999875544332221 2233 46899999999999999999998875543
No 292
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.27 E-value=8.3e-11 Score=113.60 Aligned_cols=136 Identities=15% Similarity=0.152 Sum_probs=80.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeec--------CCCc-eeeeeEEEEEeCC--ceeeEeeccccccccCCCchh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD--------EPGV-TRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~--------~~~~-t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~ 231 (484)
.++|+++|.+|+|||||+|+|++........ ...+ ........+..+| .++++|||||+.........
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~- 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC- 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh-
Confidence 4689999999999999999999876433221 1111 1223333344445 35899999999765432211
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhc-hHHHHHHH---H-HHhh--hcCeEEEEeeCCC-CCCcccHHHHHHHHhhcCC
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVARM-PSMIERQA---T-AAIE--ESCVIIFLVDGQA-GLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~-~~~~~~~~---~-~~~~--~~d~vilVvD~~~-~~~~~~~~~~~~l~~~~~~ 303 (484)
.. .+...+++- ..++.... + ..+. .+|+++++++... +....+..+++.+.. +
T Consensus 83 ~~----------------~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~---~ 143 (276)
T cd01850 83 WK----------------PIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK---R 143 (276)
T ss_pred HH----------------HHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc---c
Confidence 11 111111111 11111111 1 1111 4788999998753 555666777777764 6
Q ss_pred CeEEEEecccCCCch
Q 011492 304 KFIILAVNKCESPRK 318 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~ 318 (484)
.|+++|+||+|+...
T Consensus 144 v~vi~VinK~D~l~~ 158 (276)
T cd01850 144 VNIIPVIAKADTLTP 158 (276)
T ss_pred CCEEEEEECCCcCCH
Confidence 899999999999764
No 293
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.27 E-value=4.1e-11 Score=110.22 Aligned_cols=114 Identities=17% Similarity=0.084 Sum_probs=72.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceee--eeEEEEEeC-------CceeeEeeccccccccCCCchhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRD--RMYGRSFWG-------EHEFMLVDTGGVLNVSKSQPNIMED 234 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~--~~~~~~~~~-------~~~i~liDtpG~~~~~~~~~~~~~~ 234 (484)
.||+++|.+|||||||++++.+.... ..+ ..|.. .....+.+. ...+.+|||+|...+..
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~--~~~-~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~-------- 69 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVL--GRP-SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKS-------- 69 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC--CCC-CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHH--------
Confidence 47999999999999999999976421 111 12222 112222332 23589999999865321
Q ss_pred hhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh-------------
Q 011492 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN------------- 300 (484)
Q Consensus 235 ~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~------------- 300 (484)
.....+..+|++|+|+|.+.+.+..... ++..+...
T Consensus 70 ------------------------------l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~ 119 (202)
T cd04102 70 ------------------------------TRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGD 119 (202)
T ss_pred ------------------------------HHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 2234567899999999988765443332 22223221
Q ss_pred -------cCCCeEEEEecccCCCch
Q 011492 301 -------YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 301 -------~~~~p~ilV~NK~Dl~~~ 318 (484)
..+.|++||.||+|+.+.
T Consensus 120 ~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 120 YDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred ccccccCCCCceEEEEEECccchhh
Confidence 125799999999998754
No 294
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.26 E-value=3.7e-11 Score=106.54 Aligned_cols=103 Identities=39% Similarity=0.548 Sum_probs=77.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|+|.....+...+++++........ ..+..+.++||||+..... ..........
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~------~~~~~~~~~~ 76 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT-DDDAQIIFVDTPGIHKPKK------KLGERMVKAA 76 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE-cCCeEEEEEECCCCCcchH------HHHHHHHHHH
Confidence 57999999999999999999999877777777777765554332 3456789999999865431 1112233445
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
...++.+|++++|+|+...++..+.+++++
T Consensus 77 ~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~ 106 (168)
T cd04163 77 WSALKDVDLVLFVVDASEPIGEGDEFILEL 106 (168)
T ss_pred HHHHHhCCEEEEEEECCCccCchHHHHHHH
Confidence 567899999999999998878877776654
No 295
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.25 E-value=2.8e-11 Score=109.64 Aligned_cols=106 Identities=25% Similarity=0.246 Sum_probs=74.5
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHH-
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~- 446 (484)
....+|+++|.+|+|||||+|.|.+.. ...+++.+|+|++...... + .++.+|||||+...... .......
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~~~liDtpG~~~~~~~---~~~~~~~~ 88 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV---N-DGFRLVDLPGYGYAKVS---KEEKEKWQ 88 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe---C-CcEEEEeCCCCccccCC---hhHHHHHH
Confidence 345689999999999999999999975 5667788898887643332 2 47999999998543210 0011111
Q ss_pred -HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 447 -SVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 447 -~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+...++....+|++++|+|+..+++..+..+++.
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~ 124 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEW 124 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHH
Confidence 12333344456799999999999999999876654
No 296
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=4e-11 Score=108.83 Aligned_cols=97 Identities=22% Similarity=0.259 Sum_probs=76.9
Q ss_pred ccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhh
Q 011492 155 IGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED 234 (484)
Q Consensus 155 ~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~ 234 (484)
..+..+....||+++|.|.+|||||+..++... .....+.++|..+..+.+.++|..++++|.||+..........+
T Consensus 54 GFeV~KsGdaRValIGfPSVGKStlLs~iT~T~-SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG-- 130 (364)
T KOG1486|consen 54 GFEVLKSGDARVALIGFPSVGKSTLLSKITSTH-SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG-- 130 (364)
T ss_pred CeeeeccCCeEEEEecCCCccHHHHHHHhhcch-hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC--
Confidence 344455678899999999999999999999765 45566889999999999999999999999999987555443222
Q ss_pred hhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 235 LAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 235 ~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
+++++..+.+|++++|+|++
T Consensus 131 -----------------------------RQviavArtaDlilMvLDat 150 (364)
T KOG1486|consen 131 -----------------------------RQVIAVARTADLILMVLDAT 150 (364)
T ss_pred -----------------------------ceEEEEeecccEEEEEecCC
Confidence 45556667788888888843
No 297
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.25 E-value=6.7e-11 Score=123.79 Aligned_cols=118 Identities=19% Similarity=0.255 Sum_probs=83.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc-----eee----------ec------CCCceeeeeEEEEEeCCceeeEeeccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----AIV----------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGG 220 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~-----~~~----------~~------~~~~t~~~~~~~~~~~~~~i~liDtpG 220 (484)
..++|+|+|++|+|||||.++|+.... ..+ ++ ..+.+.......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 467999999999999999999863110 001 00 112333334445677888999999999
Q ss_pred cccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh
Q 011492 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~ 300 (484)
+.++. ..+...+..+|.+|+|+|+..+.......++..+...
T Consensus 89 ~~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~ 130 (526)
T PRK00741 89 HEDFS--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR 130 (526)
T ss_pred chhhH--------------------------------------HHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc
Confidence 86422 2344567889999999999887655555555555544
Q ss_pred cCCCeEEEEecccCCCchh
Q 011492 301 YMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 301 ~~~~p~ilV~NK~Dl~~~~ 319 (484)
+.|+++++||+|+....
T Consensus 131 --~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 131 --DTPIFTFINKLDRDGRE 147 (526)
T ss_pred --CCCEEEEEECCcccccC
Confidence 89999999999987543
No 298
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.25 E-value=6.9e-11 Score=121.59 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=94.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce------------------------------eeecCCCceeeeeEEEEEeCCc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA------------------------------IVVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~------------------------------~~~~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|+.++|||||+.+|+..... ......+.|.+.....+...++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3578999999999999999988631100 0011235566665666667788
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC----
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---- 287 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~---- 287 (484)
.++++||||+.++. ......+..+|.+|+|+|+..+..
T Consensus 86 ~i~liDtPGh~df~--------------------------------------~~~~~g~~~aD~aIlVVda~~G~~e~g~ 127 (447)
T PLN00043 86 YCTVIDAPGHRDFI--------------------------------------KNMITGTSQADCAVLIIDSTTGGFEAGI 127 (447)
T ss_pred EEEEEECCCHHHHH--------------------------------------HHHHhhhhhccEEEEEEEcccCceeccc
Confidence 89999999986522 344566789999999999987521
Q ss_pred ---cccHHHHHHHHhhcCCCe-EEEEecccCCCchhh--------hh-hHHHH-hcC-----CCceeeecccCCCCch
Q 011492 288 ---AADEEIADWLRKNYMDKF-IILAVNKCESPRKGI--------MQ-VSEFW-SLG-----FSPLPISAISGTGTGE 346 (484)
Q Consensus 288 ---~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~~~--------~~-~~~~~-~~~-----~~~i~vSa~~g~gi~~ 346 (484)
.+..+.+..+... +.| +++++||+|+..... .. ...+. ..+ ++++++||++|.|+.+
T Consensus 128 ~~~~qT~eh~~~~~~~--gi~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 128 SKDGQTREHALLAFTL--GVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCCchHHHHHHHHHHc--CCCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 2223333333333 664 688999999862111 11 11111 223 5689999999999854
No 299
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.24 E-value=5.4e-11 Score=109.93 Aligned_cols=113 Identities=22% Similarity=0.280 Sum_probs=70.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe----CCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW----GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
++|+++|++|||||||+++|.+..... ..+. + ......... .+..+.+|||||+....
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~--t~~s-~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~-------------- 62 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRS--TVTS-I-EPNVATFILNSEGKGKKFRLVDVPGHPKLR-------------- 62 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCC--ccCc-E-eecceEEEeecCCCCceEEEEECCCCHHHH--------------
Confidence 478999999999999999999764211 1111 1 122222222 25679999999986421
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhc-CeEEEEeeCCCCCCcccH---HHHHHHHh---hcCCCeEEEEecc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEES-CVIIFLVDGQAGLTAADE---EIADWLRK---NYMDKFIILAVNK 312 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~-d~vilVvD~~~~~~~~~~---~~~~~l~~---~~~~~p~ilV~NK 312 (484)
.....++..+ +.+|+|+|+......... .+...+.. ...+.|+++|+||
T Consensus 63 ------------------------~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK 118 (203)
T cd04105 63 ------------------------DKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNK 118 (203)
T ss_pred ------------------------HHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecc
Confidence 2333456666 999999998764221111 12222221 1147899999999
Q ss_pred cCCCch
Q 011492 313 CESPRK 318 (484)
Q Consensus 313 ~Dl~~~ 318 (484)
+|+...
T Consensus 119 ~Dl~~a 124 (203)
T cd04105 119 QDLFTA 124 (203)
T ss_pred hhhccc
Confidence 998753
No 300
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.24 E-value=1.9e-11 Score=116.93 Aligned_cols=87 Identities=30% Similarity=0.376 Sum_probs=68.7
Q ss_pred EEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC----------------cEEEEEcCCCccCcccc
Q 011492 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ----------------KFRLIDTAGIRKRAAIA 437 (484)
Q Consensus 374 i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~----------------~i~liDTPG~~~~~~~~ 437 (484)
++++|.||+|||||+|+|.+... .++..|+||++.....+...+.+ ++.++||||+....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a--- 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA--- 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC---
Confidence 58999999999999999999876 78889999998877666544322 59999999998532
Q ss_pred CCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011492 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
..........+..++.+|++++|||+.
T Consensus 77 ----~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 77 ----SKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred ----chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 222334556777889999999999974
No 301
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=5.7e-11 Score=99.32 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..|++++|+.|.|||.|+..+...++. ..+.+.|.. .-...+.+++ .++.+|||+|.+.++
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGve--FgSrIinVGgK~vKLQIWDTAGQErFR-------------- 72 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVE--FGSRIVNVGGKTVKLQIWDTAGQERFR-------------- 72 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHHhhhcccccceeeee--ecceeeeecCcEEEEEEeecccHHHHH--------------
Confidence 678999999999999999998865421 222222222 1222233433 358999999987533
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh----cCCCeEEEEecccCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN----YMDKFIILAVNKCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~Dl 315 (484)
..++.+++.+-..++|+|++...+.. .+-.||... .++.-++++.||.|+
T Consensus 73 ------------------------SVtRsYYRGAAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL 126 (214)
T KOG0086|consen 73 ------------------------SVTRSYYRGAAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDL 126 (214)
T ss_pred ------------------------HHHHHHhccccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhc
Confidence 45667888899999999987543332 334454432 246668888999999
Q ss_pred CchhhhhhHH---HHh-cCCCceeeecccCCCCchhhHHHHH
Q 011492 316 PRKGIMQVSE---FWS-LGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 316 ~~~~~~~~~~---~~~-~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
..+......+ +.. ..+..+++||++|+++++.+-....
T Consensus 127 ~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~ 168 (214)
T KOG0086|consen 127 DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 168 (214)
T ss_pred ChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence 8765443332 322 2345678999999999987765544
No 302
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.24 E-value=3.3e-11 Score=118.93 Aligned_cols=89 Identities=27% Similarity=0.324 Sum_probs=71.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC----------------CcEEEEEcCCCccCcc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKRAA 435 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g----------------~~i~liDTPG~~~~~~ 435 (484)
.+|+++|.||+|||||+|+|.+.. ..++..|+||++.....+...+. .++.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a- 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA- 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC-
Confidence 579999999999999999999987 68889999999887655554332 258999999997531
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
.....+....+..++.+|++++|||+.
T Consensus 81 ------~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 81 ------SKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred ------ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 222345567788899999999999974
No 303
>PTZ00258 GTP-binding protein; Provisional
Probab=99.24 E-value=3.1e-11 Score=120.54 Aligned_cols=91 Identities=29% Similarity=0.325 Sum_probs=72.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC----------------CcEEEEEcCCCccC
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKR 433 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g----------------~~i~liDTPG~~~~ 433 (484)
...+|+|+|.||+|||||+|+|.+.. ..++..|+||++.........+. .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 35689999999999999999998876 57889999999887766654432 25999999999853
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
. .....+....+..++.+|++++|||+.
T Consensus 99 a-------~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 A-------SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred C-------cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 2 122334567778899999999999974
No 304
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=1.2e-11 Score=104.08 Aligned_cols=156 Identities=15% Similarity=0.095 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
-.++|+++|..=+|||||+-+....+. ................+.+. ...+.+|||+|.+.+....+.|
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkF-n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY-------- 82 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKF-NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY-------- 82 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhc-chhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE--------
Confidence 368999999999999999988775431 11111111111111222222 2358999999999887766543
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcC-CCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYM-DKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~-~~p~ilV~NK~Dl~~ 317 (484)
++.++.+++|+|+++..+.+.. .+...|+..+. ...++||.||+|+..
T Consensus 83 ------------------------------YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEe 132 (218)
T KOG0088|consen 83 ------------------------------YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEE 132 (218)
T ss_pred ------------------------------EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHH
Confidence 4678999999998876554432 23333443332 356889999999976
Q ss_pred hhhhhh----HHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 318 KGIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~~----~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...... .+....+..++.+||+.+.|+.++|+.+...+-
T Consensus 133 eR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088|consen 133 ERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMI 175 (218)
T ss_pred hhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHH
Confidence 543222 122345667899999999999999998877654
No 305
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.2e-10 Score=113.66 Aligned_cols=146 Identities=23% Similarity=0.273 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC---------------------c---cee------eecCCCceeeeeEEEEEeCCc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGG---------------------N---RAI------VVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~---------------------~---~~~------~~~~~~~t~~~~~~~~~~~~~ 211 (484)
...+++++|+.++|||||+-+|+-. . .+. .....|.|.+.....+..+.+
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4678999999999999999988622 1 001 112346677666666777777
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC------
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------ 285 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~------ 285 (484)
.++++|+||+.++- ...+..+.++|+.|+|+|++.+
T Consensus 86 ~~tIiDaPGHrdFv--------------------------------------knmItGasqAD~aVLVV~a~~~efE~g~ 127 (428)
T COG5256 86 NFTIIDAPGHRDFV--------------------------------------KNMITGASQADVAVLVVDARDGEFEAGF 127 (428)
T ss_pred eEEEeeCCchHHHH--------------------------------------HHhhcchhhccEEEEEEECCCCcccccc
Confidence 89999999985421 3344567889999999999887
Q ss_pred -CCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhH-------HHH-hcC-----CCceeeecccCCCCch
Q 011492 286 -LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVS-------EFW-SLG-----FSPLPISAISGTGTGE 346 (484)
Q Consensus 286 -~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-------~~~-~~~-----~~~i~vSa~~g~gi~~ 346 (484)
...+..++..+.+ .+.-..+|+++||+|+......+.. .+. ..+ ++++|+|+..|.|+.+
T Consensus 128 ~~~gQtrEH~~La~-tlGi~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 128 GVGGQTREHAFLAR-TLGIKQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccCCchhHHHHHHH-hcCCceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 4555556554433 3334668999999999863322211 111 223 4689999999998754
No 306
>PLN00023 GTP-binding protein; Provisional
Probab=99.22 E-value=6.7e-11 Score=114.41 Aligned_cols=121 Identities=22% Similarity=0.176 Sum_probs=76.5
Q ss_pred CCCCCCCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeC---------------CceeeEeecccc
Q 011492 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWG---------------EHEFMLVDTGGV 221 (484)
Q Consensus 158 ~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~---------------~~~i~liDtpG~ 221 (484)
.+.....||+++|..|||||||++++.+..... ...+.+.+ .....+.++ ...+.+|||+|.
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d--~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq 93 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCT--VGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH 93 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeee--EEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence 344457899999999999999999999764211 11122222 122223332 134899999998
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh
Q 011492 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN 300 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~ 300 (484)
..+.... ..++..++++|+|+|.+...+.... .+++.+...
T Consensus 94 ErfrsL~--------------------------------------~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~ 135 (334)
T PLN00023 94 ERYKDCR--------------------------------------SLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAAT 135 (334)
T ss_pred hhhhhhh--------------------------------------HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHh
Confidence 7644322 2456789999999998764433222 233334332
Q ss_pred c-------------CCCeEEEEecccCCCch
Q 011492 301 Y-------------MDKFIILAVNKCESPRK 318 (484)
Q Consensus 301 ~-------------~~~p~ilV~NK~Dl~~~ 318 (484)
. .+.|++||.||+|+...
T Consensus 136 ~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 136 GTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred cccccccccccccCCCCcEEEEEECcccccc
Confidence 1 14789999999999653
No 307
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.21 E-value=4.2e-11 Score=107.19 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=64.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC-cEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ-KFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~-~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.|+++|.+|+|||||+|+|.+... .++..+++|+......+.. .+. .+.++||||+.+.... ...+....
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-------~~~~~~~~ 72 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASE-------GKGLGHRF 72 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEc-CCCCeEEEEecCcccCcccc-------cCCchHHH
Confidence 589999999999999999998654 5667778887765544443 444 8999999998542110 01122334
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
++.++.+|++++|+|+..+
T Consensus 73 ~~~~~~~d~vi~v~D~~~~ 91 (170)
T cd01898 73 LRHIERTRLLLHVIDLSGD 91 (170)
T ss_pred HHHHHhCCEEEEEEecCCC
Confidence 4556789999999999765
No 308
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.21 E-value=7.2e-11 Score=107.86 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=107.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|+|||+|...+.+.. .+..+.++..+.....+.+++. .+.++||+|..++....
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~--f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~------------ 68 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGR--FVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMR------------ 68 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccc--cccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHH------------
Confidence 5689999999999999999988764 3444555555666666666654 36899999954433322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHh-hc-CCCeEEEEecccCCCc
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRK-NY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~-~~-~~~p~ilV~NK~Dl~~ 317 (484)
..++...+..++|++..+..+..... +...+.+ .. ...|+++|+||+|+..
T Consensus 69 --------------------------~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 69 --------------------------DLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred --------------------------HHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchh
Confidence 24567789999999987765554433 2333322 11 3469999999999986
Q ss_pred hhhhhhHH----HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 318 KGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~~~~----~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.......+ ....+.+++++||+...++++++..+...+..
T Consensus 123 ~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 123 ERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred ccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHHHHHHh
Confidence 43222221 23456678999999999999999998876654
No 309
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.21 E-value=4e-11 Score=97.21 Aligned_cols=140 Identities=23% Similarity=0.254 Sum_probs=95.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
.||+++|..|+|||||.++|.|.... ...|+ -+.++. -..+||||-+-....
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----ykKTQ-----Ave~~d--~~~IDTPGEy~~~~~---------------- 53 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----YKKTQ-----AVEFND--KGDIDTPGEYFEHPR---------------- 53 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----hcccc-----eeeccC--ccccCCchhhhhhhH----------------
Confidence 58999999999999999999987521 11111 122221 236899996532211
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc-hhhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-KGIMQ 322 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~-~~~~~ 322 (484)
+...+......+|++++|..+.++.+...+.+... ..+|+|-|++|+|+.. ..+..
T Consensus 54 ------------------~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~-----~~k~vIgvVTK~DLaed~dI~~ 110 (148)
T COG4917 54 ------------------WYHALITTLQDADVIIYVHAANDPESRFPPGFLDI-----GVKKVIGVVTKADLAEDADISL 110 (148)
T ss_pred ------------------HHHHHHHHhhccceeeeeecccCccccCCcccccc-----cccceEEEEecccccchHhHHH
Confidence 11445566778999999999888766666554332 2567999999999995 33333
Q ss_pred hHHHHh-cC-CCceeeecccCCCCchhhHHHHHH
Q 011492 323 VSEFWS-LG-FSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 323 ~~~~~~-~~-~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
...++. .| -++|.+|+....|+++|++.+...
T Consensus 111 ~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 111 VKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred HHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 333332 23 378999999999999999988653
No 310
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.21 E-value=5.2e-11 Score=124.61 Aligned_cols=116 Identities=18% Similarity=0.235 Sum_probs=81.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-----eee----------c------CCCceeeeeEEEEEeCCceeeEeeccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVV----------D------EPGVTRDRMYGRSFWGEHEFMLVDTGG 220 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-----~~~----------~------~~~~t~~~~~~~~~~~~~~i~liDtpG 220 (484)
+.++|+|+|++|+|||||+++|+..... .+. + ..+.+.......+.+++..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4679999999999999999998522101 010 0 113333344455677888999999999
Q ss_pred cccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh
Q 011492 221 VLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN 300 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~ 300 (484)
+..+. ..+...+..+|.+|+|+|+..+.......+.+.+...
T Consensus 90 ~~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~ 131 (527)
T TIGR00503 90 HEDFS--------------------------------------EDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR 131 (527)
T ss_pred hhhHH--------------------------------------HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 85321 2344667889999999999877655555555555443
Q ss_pred cCCCeEEEEecccCCCc
Q 011492 301 YMDKFIILAVNKCESPR 317 (484)
Q Consensus 301 ~~~~p~ilV~NK~Dl~~ 317 (484)
+.|+++++||+|+..
T Consensus 132 --~~PiivviNKiD~~~ 146 (527)
T TIGR00503 132 --DTPIFTFMNKLDRDI 146 (527)
T ss_pred --CCCEEEEEECccccC
Confidence 789999999999864
No 311
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.20 E-value=1.3e-10 Score=128.45 Aligned_cols=149 Identities=17% Similarity=0.179 Sum_probs=100.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC------------------ceeeEeecccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------HEFMLVDTGGVLN 223 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~i~liDtpG~~~ 223 (484)
+.+--+++++ ||||+.+|++.+. ......|.|++.-...+.+.. ..+.+|||||+..
T Consensus 464 ~~~~~~~~~~----KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~ 538 (1049)
T PRK14845 464 NFIANGILVH----NTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEA 538 (1049)
T ss_pred cceeeeeecc----cccHHHHHhCCCc-ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHH
Confidence 3334445544 9999999999864 344456777766554444321 1379999999865
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+.. .....+..+|++++|+|+..++.....+.+..+... +
T Consensus 539 F~~--------------------------------------lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~--~ 578 (1049)
T PRK14845 539 FTS--------------------------------------LRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY--K 578 (1049)
T ss_pred HHH--------------------------------------HHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc--C
Confidence 321 112345678999999999888777777777777665 7
Q ss_pred CeEEEEecccCCCchhh------------------hhhH-----H----HHh---------------cCCCceeeecccC
Q 011492 304 KFIILAVNKCESPRKGI------------------MQVS-----E----FWS---------------LGFSPLPISAISG 341 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~------------------~~~~-----~----~~~---------------~~~~~i~vSa~~g 341 (484)
.|+++|+||+|+..... .+.. . +.. ...+++++||++|
T Consensus 579 iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tG 658 (1049)
T PRK14845 579 TPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTG 658 (1049)
T ss_pred CCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCC
Confidence 89999999999863110 0000 0 011 1347899999999
Q ss_pred CCCchhhHHHHHHh
Q 011492 342 TGTGELLDLVCSEL 355 (484)
Q Consensus 342 ~gi~~L~~~i~~~l 355 (484)
.|+++|+..+....
T Consensus 659 eGId~Ll~~l~~l~ 672 (1049)
T PRK14845 659 EGIPELLMMVAGLA 672 (1049)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999998886543
No 312
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.20 E-value=3.8e-10 Score=105.88 Aligned_cols=136 Identities=18% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcc-eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.....|+++|.+|+|||||+|.|.+... .......++ . ......+..+.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i-~i~~~~~~~i~~vDtPg~~----------------- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----I-TVVTGKKRRLTFIECPNDI----------------- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----E-EEEecCCceEEEEeCCchH-----------------
Confidence 3467799999999999999999987521 112222221 0 0112356789999999753
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE-EEecccCCCch
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII-LAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i-lV~NK~Dl~~~ 318 (484)
..+...+..+|++++|+|+..+....+..+...+... +.|.+ +|+||+|+...
T Consensus 95 ------------------------~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 95 ------------------------NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTHLDLFKK 148 (225)
T ss_pred ------------------------HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEeccccCCc
Confidence 1223446789999999999888777777777777664 67754 59999998642
Q ss_pred hh--hhh---H-H-HH---hcCCCceeeecccCCCC
Q 011492 319 GI--MQV---S-E-FW---SLGFSPLPISAISGTGT 344 (484)
Q Consensus 319 ~~--~~~---~-~-~~---~~~~~~i~vSa~~g~gi 344 (484)
.. ... + . +. ..+.+++++||++.-.+
T Consensus 149 ~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 149 NKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 21 111 1 1 11 12347899999977443
No 313
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=8.2e-11 Score=116.38 Aligned_cols=91 Identities=21% Similarity=0.278 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..|+|+|.||||||||+|+|.+.+ .+++..|+||+......+...++.++.++||||+.+.. .....+....
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~-~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga-------~~~~gLg~~f 230 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA-------SEGAGLGHRF 230 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCC-CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCC-------CccccHHHHH
Confidence 479999999999999999999865 56788899999988877765567789999999997532 1111233455
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
++.++.++++++|+|+.+.
T Consensus 231 lrhie~a~vlI~ViD~s~~ 249 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAV 249 (335)
T ss_pred HHHhhhcCEEEEEEcCCCC
Confidence 6678899999999998753
No 314
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.18 E-value=2.5e-11 Score=126.12 Aligned_cols=61 Identities=21% Similarity=0.250 Sum_probs=43.2
Q ss_pred CCchhHHHHHHhhchHH-HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC--CeEEEE
Q 011492 245 GIPLATREAAVARMPSM-IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD--KFIILA 309 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~--~p~ilV 309 (484)
|++.. .+.+..++.. -.|.+++.+..++.-++++| +|.+++|.+.+.||...+.+ ..+|+|
T Consensus 143 g~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLD--EPTNHLD~~~i~WLe~~L~~~~gtviiV 206 (530)
T COG0488 143 GFPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLD--EPTNHLDLESIEWLEDYLKRYPGTVIVV 206 (530)
T ss_pred CCCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEc--CCCcccCHHHHHHHHHHHHhCCCcEEEE
Confidence 44443 6777777544 34667777777788888998 89999999988888875522 255655
No 315
>PRK12740 elongation factor G; Reviewed
Probab=99.18 E-value=1.5e-10 Score=126.06 Aligned_cols=108 Identities=22% Similarity=0.280 Sum_probs=78.8
Q ss_pred EcCCCCChhHHHHHHhCCccee-----------ee------cCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchh
Q 011492 169 VGRPNVGKSALFNRLVGGNRAI-----------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 169 ~G~~~~GKSsl~n~l~~~~~~~-----------~~------~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 231 (484)
+|++|+|||||+++|+.....+ +. ...+.|.......+.+.+..+.+|||||+..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~------ 74 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFT------ 74 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHH------
Confidence 5999999999999995432111 00 123555666666778889999999999985411
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEec
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVN 311 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~N 311 (484)
..+...+..+|++++|+|+..+.......++..+... +.|+++|+|
T Consensus 75 --------------------------------~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~--~~p~iiv~N 120 (668)
T PRK12740 75 --------------------------------GEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY--GVPRIIFVN 120 (668)
T ss_pred --------------------------------HHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEE
Confidence 2344667889999999999887766655555655554 789999999
Q ss_pred ccCCC
Q 011492 312 KCESP 316 (484)
Q Consensus 312 K~Dl~ 316 (484)
|+|+.
T Consensus 121 K~D~~ 125 (668)
T PRK12740 121 KMDRA 125 (668)
T ss_pred CCCCC
Confidence 99965
No 316
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.17 E-value=1.4e-10 Score=98.33 Aligned_cols=153 Identities=22% Similarity=0.276 Sum_probs=100.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.|+.++|.+-+|||+|+..++..+.+..++ |..-.+....-+.+ .| .++.+|||+|.+.++
T Consensus 9 frlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtagqerfr--------------- 72 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQERFR--------------- 72 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccccCC-CccchHHHHHHHhcCCCcEEEEEEeeccchHHHH---------------
Confidence 578899999999999999999776543332 21111111111111 12 357999999997644
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc-----CCCe-EEEEecccC
Q 011492 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-----MDKF-IILAVNKCE 314 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~-----~~~p-~ilV~NK~D 314 (484)
..+..+++++-.+++|+|.+...+.. .+..|+.+.. +.++ +.+|.+|+|
T Consensus 73 -----------------------sitksyyrnsvgvllvyditnr~sfe--hv~~w~~ea~m~~q~P~k~VFlLVGhKsD 127 (213)
T KOG0091|consen 73 -----------------------SITKSYYRNSVGVLLVYDITNRESFE--HVENWVKEAAMATQGPDKVVFLLVGHKSD 127 (213)
T ss_pred -----------------------HHHHHHhhcccceEEEEeccchhhHH--HHHHHHHHHHHhcCCCCeeEEEEeccccc
Confidence 44557888999999999987643322 2233444321 2333 578999999
Q ss_pred CCchhhhhhHH----HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 315 SPRKGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 315 l~~~~~~~~~~----~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+.........+ ....++.++++||++|.|+++.+..+.+.+..
T Consensus 128 L~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 128 LQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred hhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHHHHHHHHH
Confidence 98654433222 23457789999999999999999888776643
No 317
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.16 E-value=2.3e-10 Score=107.04 Aligned_cols=154 Identities=21% Similarity=0.144 Sum_probs=96.4
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.+|+++|..|||||||+++|.+....... .+.............. ..++.+|||+|+....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~---------------- 68 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY-PPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYR---------------- 68 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC-CCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHH----------------
Confidence 79999999999999999999987532211 1111111111111111 3458999999987533
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHhhc-CCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
.....+...++.+++++|.... .......+...+.... .+.|+++|.||+|+...
T Consensus 69 ----------------------~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (219)
T COG1100 69 ----------------------SLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDE 126 (219)
T ss_pred ----------------------HHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccc
Confidence 2233566889999999997642 1222223343444443 25899999999999765
Q ss_pred hhhh------------hHHHH-------hcCCCceeeecc--cCCCCchhhHHHHHHhh
Q 011492 319 GIMQ------------VSEFW-------SLGFSPLPISAI--SGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~------------~~~~~-------~~~~~~i~vSa~--~g~gi~~L~~~i~~~l~ 356 (484)
.... ..... .....++.+|++ ++.++.+++..+...+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~ 185 (219)
T COG1100 127 QSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLL 185 (219)
T ss_pred hhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence 3211 00000 012236889999 99999999888777664
No 318
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.15 E-value=5.9e-11 Score=106.74 Aligned_cols=87 Identities=31% Similarity=0.379 Sum_probs=63.8
Q ss_pred EEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHh
Q 011492 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (484)
Q Consensus 376 lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (484)
++|.+|+|||||+|+|.+... .++..+++|++.........++.++.++||||+.+.... ...........+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-------~~~~~~~~~~~~ 72 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASE-------GRGLGNQFLAHI 72 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhc-------CCCccHHHHHHH
Confidence 579999999999999999865 567778888877655554322889999999998542110 011122344567
Q ss_pred hcCcEEEEEEeCccc
Q 011492 456 RRSDVVALVIEAMAC 470 (484)
Q Consensus 456 ~~~d~~l~V~~~~~~ 470 (484)
+.+|++++|+|+.+.
T Consensus 73 ~~~d~ii~v~d~~~~ 87 (176)
T cd01881 73 RRADAILHVVDASED 87 (176)
T ss_pred hccCEEEEEEeccCC
Confidence 889999999999765
No 319
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.15 E-value=8.2e-11 Score=109.12 Aligned_cols=102 Identities=21% Similarity=0.168 Sum_probs=73.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..++.++|.+|+|||||+|+|.+.+...+..++-+|+ ........+++..+++|||||+-+... -..+....
T Consensus 39 pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~-~~~~~~~~~~~~~l~lwDtPG~gdg~~-------~D~~~r~~ 110 (296)
T COG3596 39 PVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTD-ITTRLRLSYDGENLVLWDTPGLGDGKD-------KDAEHRQL 110 (296)
T ss_pred ceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCC-chhhHHhhccccceEEecCCCcccchh-------hhHHHHHH
Confidence 3577899999999999999999877776665543333 333344446789999999999976431 22233445
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
+...+...|++|+++++.+|.---|...++
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~ 140 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLR 140 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHH
Confidence 556788899999999999987666665553
No 320
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=5.8e-10 Score=108.39 Aligned_cols=69 Identities=29% Similarity=0.406 Sum_probs=56.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC------------------ceeeEeeccccccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------HEFMLVDTGGVLNV 224 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~i~liDtpG~~~~ 224 (484)
.++++|+|.||||||||+|+|+... +...++|++|.+++.+...+.. ..+.++|.+|+...
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 5789999999999999999999877 7789999999999988766532 24789999999876
Q ss_pred cCCCchhh
Q 011492 225 SKSQPNIM 232 (484)
Q Consensus 225 ~~~~~~~~ 232 (484)
....+.++
T Consensus 81 As~GeGLG 88 (372)
T COG0012 81 ASKGEGLG 88 (372)
T ss_pred cccCCCcc
Confidence 55544433
No 321
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.14 E-value=1.9e-10 Score=105.61 Aligned_cols=104 Identities=29% Similarity=0.287 Sum_probs=71.9
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhH--H
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA--L 446 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~--~ 446 (484)
...+|+++|.+|+|||||+|+|++.. ...+.+.+|+|+....... +.++.||||||+..... ....... .
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~l~l~DtpG~~~~~~---~~~~~~~~~~ 95 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV----NDKLRLVDLPGYGYAKV---SKEEKEKWQK 95 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec----CCeEEEeCCCCCCCcCC---CchHHHHHHH
Confidence 45689999999999999999999975 5667778888887543222 36799999999754211 0011111 1
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 447 SVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.....+......+++++|+|+..+++..+.++.+
T Consensus 96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~ 129 (196)
T PRK00454 96 LIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIE 129 (196)
T ss_pred HHHHHHHhCccceEEEEEEecCCCCCHHHHHHHH
Confidence 2233334445668899999998888887766554
No 322
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.14 E-value=9.5e-11 Score=108.80 Aligned_cols=91 Identities=22% Similarity=0.329 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeec------------------------------CCCCceecccceeeecCCCCcE
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQKF 422 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~g~~i 422 (484)
+|+++|++|+|||||+|+|+......+. ...|+|++.....+. +++.++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFS-TPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEe-cCCceE
Confidence 5899999999999999999875433221 115888888776665 578899
Q ss_pred EEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 423 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
.++||||..+. ...+...++.+|++++|+|+...+..+++..
T Consensus 80 ~liDTpG~~~~--------------~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~ 121 (208)
T cd04166 80 IIADTPGHEQY--------------TRNMVTGASTADLAILLVDARKGVLEQTRRH 121 (208)
T ss_pred EEEECCcHHHH--------------HHHHHHhhhhCCEEEEEEECCCCccHhHHHH
Confidence 99999997421 1223456789999999999998887777544
No 323
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.14 E-value=2.4e-10 Score=101.38 Aligned_cols=91 Identities=25% Similarity=0.321 Sum_probs=63.0
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceee--cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~--~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.|+++|.+|+|||||+|+|.+...... ...+++|.+..........+..+.+|||||.... ...
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~--------------~~~ 67 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF--------------IKN 67 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH--------------HHH
Confidence 589999999999999999998542222 2245677665544444333678999999997321 123
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADW 477 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~ 477 (484)
+...++.+|++++|+|+...+..+...
T Consensus 68 ~~~~~~~ad~ii~V~d~~~~~~~~~~~ 94 (164)
T cd04171 68 MLAGAGGIDLVLLVVAADEGIMPQTRE 94 (164)
T ss_pred HHhhhhcCCEEEEEEECCCCccHhHHH
Confidence 445678999999999997655444433
No 324
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.13 E-value=3.7e-10 Score=104.54 Aligned_cols=98 Identities=27% Similarity=0.382 Sum_probs=66.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|||||||+|.|++... .+...+++|.+.........+...+.+|||||+.+.. ..........
T Consensus 41 ~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~------~~~~~~~~~~ 113 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDL------PHQLVEAFRS 113 (204)
T ss_pred CCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCC------CHHHHHHHHH
Confidence 46999999999999999999999753 3344456666555444444333489999999985421 0111112233
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQA 475 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d 475 (484)
....+..+|++++|+|+..+...++
T Consensus 114 ~~~~~~~~d~ii~v~D~~~~~~~~~ 138 (204)
T cd01878 114 TLEEVAEADLLLHVVDASDPDYEEQ 138 (204)
T ss_pred HHHHHhcCCeEEEEEECCCCChhhH
Confidence 4455778999999999987655544
No 325
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=8.5e-11 Score=98.98 Aligned_cols=152 Identities=18% Similarity=0.265 Sum_probs=96.7
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeC-----------CceeeEeeccccccccCCCchh
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG-----------EHEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~-----------~~~i~liDtpG~~~~~~~~~~~ 231 (484)
++.+.+|.+|+||||++...+..+.. ..-.+.| .+....++.++ ...+.+|||+|.+.++.
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVG--IDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS----- 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVG--IDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS----- 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEee--cccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH-----
Confidence 45668899999999999888765321 1111111 11111122111 12479999999976543
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-----hcCCCeE
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK-----NYMDKFI 306 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-----~~~~~p~ 306 (484)
.+-+.++.+-..++++|.+...+.+ .+.+|+.+ +..+..+
T Consensus 83 ---------------------------------LTTAFfRDAMGFlLiFDlT~eqSFL--nvrnWlSQL~~hAYcE~PDi 127 (219)
T KOG0081|consen 83 ---------------------------------LTTAFFRDAMGFLLIFDLTSEQSFL--NVRNWLSQLQTHAYCENPDI 127 (219)
T ss_pred ---------------------------------HHHHHHHhhccceEEEeccchHHHH--HHHHHHHHHHHhhccCCCCE
Confidence 3446667778889999976543333 34445443 2234558
Q ss_pred EEEecccCCCchhhhhhH---H-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 307 ILAVNKCESPRKGIMQVS---E-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 307 ilV~NK~Dl~~~~~~~~~---~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+++.||+|+.+....... . ..+.++|+|++||-+|.++.+..+.+...+.+
T Consensus 128 vlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 128 VLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVEKAVELLLDLVMK 182 (219)
T ss_pred EEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHHHHHHHHHHHHHH
Confidence 999999999875443221 1 23568899999999999998877777665543
No 326
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.12 E-value=1.8e-10 Score=110.20 Aligned_cols=86 Identities=27% Similarity=0.301 Sum_probs=69.7
Q ss_pred EEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-----------------eeeEeeccccccccCCC
Q 011492 166 VAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSKSQ 228 (484)
Q Consensus 166 V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDtpG~~~~~~~~ 228 (484)
|+|+|.||+|||||+|+|++.+. .++++|++|.+...+.+.+.+. .+.++||||+.......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 58999999999999999999875 7888999999999988887654 48999999997533221
Q ss_pred chhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 229 PNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 229 ~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
. .+...++..++.+|++++|+|+.
T Consensus 80 ~-------------------------------glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 E-------------------------------GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred h-------------------------------HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1 12356677889999999999964
No 327
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.11 E-value=2.6e-10 Score=112.64 Aligned_cols=88 Identities=30% Similarity=0.317 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-----------------eeeEeeccccccccC
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSK 226 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDtpG~~~~~~ 226 (484)
++|+|+|.||||||||+|+|++.. ..++++|++|.+...+.+.+.+. .+.++||||+.....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999987 67889999999999888777552 489999999975322
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
... .+...++..+..+|++++|+|+.
T Consensus 82 ~g~-------------------------------glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGE-------------------------------GLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHH-------------------------------HHHHHHHHHHHhCCEEEEEEeCC
Confidence 211 13356778889999999999974
No 328
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=2.2e-11 Score=99.41 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=97.6
Q ss_pred EEcCCCCChhHHHHHHhCCcceeeecCCCce--eeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 168 IVGRPNVGKSALFNRLVGGNRAIVVDEPGVT--RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 168 l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t--~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|.+++|||.|+-++...- .....--.| .+....-+..++. ++++|||+|++.++.
T Consensus 2 llgds~~gktcllir~kdga--fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrs----------------- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGA--FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRS----------------- 62 (192)
T ss_pred ccccCccCceEEEEEeccCc--eecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhh-----------------
Confidence 78999999999986654331 111111111 2222223344443 579999999976543
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCchhhh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~ 321 (484)
.+.++++.+|.+++++|+....+..+. .++..+.++. ....+.++.||+|+......
T Consensus 63 ---------------------vt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v 121 (192)
T KOG0083|consen 63 ---------------------VTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAV 121 (192)
T ss_pred ---------------------hhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhcc
Confidence 444778999999999998776555433 2333344331 13567899999999663322
Q ss_pred h----hHHHHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 322 Q----VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 322 ~----~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
. ..-....++|++++||++|.+++-.+-.|.+.+.+.
T Consensus 122 ~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 122 KRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKKL 162 (192)
T ss_pred ccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHHh
Confidence 1 112344688999999999999999888887776543
No 329
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.11 E-value=7e-10 Score=109.05 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC----cce-----------eeecCCC---ceeeeeE---EEEEeC-C----ceeeE
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGG----NRA-----------IVVDEPG---VTRDRMY---GRSFWG-E----HEFML 215 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~----~~~-----------~~~~~~~---~t~~~~~---~~~~~~-~----~~i~l 215 (484)
+..-|+++|+.++|||||+|+|.+. +.. .++..+| +|.+..+ ..+.+. . .++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3678999999999999999999988 554 5667778 6666555 333321 1 57999
Q ss_pred eeccccccccCCCchhhhhhh-hhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhh-hcCeEEEEe-eCC------CCC
Q 011492 216 VDTGGVLNVSKSQPNIMEDLA-ITTTIGMEGIPLATREAAVARMPSMIERQATAAIE-ESCVIIFLV-DGQ------AGL 286 (484)
Q Consensus 216 iDtpG~~~~~~~~~~~~~~~~-~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~-~~d~vilVv-D~~------~~~ 286 (484)
+||+|+.........-.+.-+ ....+.-+-+|.. +..+ --+...+. .+++.|+|. |++ ...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~-------~AAe---iGT~kVI~dhstIgivVtTDgsi~dI~Re~y 165 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFE-------EAAE---IGTRKVIQEHSTIGVVVTTDGTITDIPREDY 165 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchh-------hhhh---hhHHHHHHhcCcEEEEEEcCCCccccccccc
Confidence 999998654433221111000 0000000011110 0000 11345556 799999999 764 334
Q ss_pred CcccHHHHHHHHhhcCCCeEEEEecccC-CCchhhhhhH-H-HHhcCCCceeeeccc
Q 011492 287 TAADEEIADWLRKNYMDKFIILAVNKCE-SPRKGIMQVS-E-FWSLGFSPLPISAIS 340 (484)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~p~ilV~NK~D-l~~~~~~~~~-~-~~~~~~~~i~vSa~~ 340 (484)
......++..|++. ++|+++|+||+| .... ..... . ....+.+++++|+..
T Consensus 166 ~~aEe~~i~eLk~~--~kPfiivlN~~dp~~~e-t~~l~~~l~eky~vpvl~v~c~~ 219 (492)
T TIGR02836 166 VEAEERVIEELKEL--NKPFIILLNSTHPYHPE-TEALRQELEEKYDVPVLAMDVES 219 (492)
T ss_pred hHHHHHHHHHHHhc--CCCEEEEEECcCCCCch-hHHHHHHHHHHhCCceEEEEHHH
Confidence 44455677777776 999999999999 4332 22111 1 223456777887753
No 330
>PTZ00258 GTP-binding protein; Provisional
Probab=99.10 E-value=3.3e-10 Score=113.18 Aligned_cols=90 Identities=23% Similarity=0.210 Sum_probs=72.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-----------------ceeeEeeccccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDtpG~~~~ 224 (484)
...+|+|+|.||||||||+|+|++.. ..++++|++|.....+.+.+.+ .++.++||||+...
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 46799999999999999999998876 5888999999999998887653 24899999999753
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
..... .+...++..+..+|++++|+|+.
T Consensus 99 a~~g~-------------------------------gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGE-------------------------------GLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred Ccchh-------------------------------HHHHHHHHHHHHCCEEEEEEeCC
Confidence 32211 13356778899999999999974
No 331
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=2e-10 Score=95.30 Aligned_cols=153 Identities=18% Similarity=0.241 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
...+|.++|--|+||+|++-++--.+.....++++.. ...+.+++.++.+||..|..+.+..+.
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttkPtigfn----ve~v~yKNLk~~vwdLggqtSirPyWR------------ 80 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFN----VETVPYKNLKFQVWDLGGQTSIRPYWR------------ 80 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcC----ccccccccccceeeEccCcccccHHHH------------
Confidence 4679999999999999999887644433334444433 344556788899999999877555443
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHh-hcCCCeEEEEecccCCCch
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
.++.+.|.+|+|+|..+. ......++...|.+ .+.+..+++++||.|....
T Consensus 81 --------------------------cYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 81 --------------------------CYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred --------------------------HHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 456788999999997653 33333445555544 3346678889999997543
Q ss_pred hhh-------hhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 319 GIM-------QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~-------~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ........-+.++..||.+|.|++..++|+.+-++
T Consensus 135 ~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 135 LTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred hhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHHHHHHHHHh
Confidence 211 11222333467899999999999999999987664
No 332
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=5.2e-10 Score=92.44 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+.+|-.++||||++..|.-.....+.+ |.......+.+.+..+.+||..|....+..+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~~~ip----TvGFnvetVtykN~kfNvwdvGGqd~iRplW-------------- 78 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSVTTIP----TVGFNVETVTYKNVKFNVWDVGGQDKIRPLW-------------- 78 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCccccc----ccceeEEEEEeeeeEEeeeeccCchhhhHHH--------------
Confidence 6799999999999999999987554332333 4445556677888899999999986544333
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHh-hcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRK-NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~ 319 (484)
..++.....+|||+|+... ......++...+.+ .....++++..||.|+....
T Consensus 79 ------------------------rhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~ 134 (180)
T KOG0071|consen 79 ------------------------RHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM 134 (180)
T ss_pred ------------------------HhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc
Confidence 3556778899999997553 11111222222322 22467889999999997643
Q ss_pred hhh----hHHH---HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 320 IMQ----VSEF---WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~----~~~~---~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+ ..+. ....+.+.+.+|.+|.|+.+-+.++.+.++
T Consensus 135 ~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 135 KPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred CHHHHHHHhccccccCCccEeeccccccchhHHHHHHHHHhhcc
Confidence 222 2221 223456789999999999999998877653
No 333
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.09 E-value=3.1e-10 Score=117.78 Aligned_cols=103 Identities=25% Similarity=0.397 Sum_probs=80.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|+||+|||||+|+|.|.+ ..++..||+|.+..+..+.. .|+++.++|.||+.+.... ...+.+.+-
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~------S~DE~Var~ 75 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAY------SEDEKVARD 75 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccC-ceecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCC------CchHHHHHH
Confidence 469999999999999999999984 67999999999988888874 6778999999999876532 334444444
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhhcC
Q 011492 452 FRAIRRSDVVALVIEAMACITEQADWRDHRWG 483 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~~ 483 (484)
+..-..+|+++-|+|+. .+..+=.-+++-++
T Consensus 76 ~ll~~~~D~ivnVvDAt-nLeRnLyltlQLlE 106 (653)
T COG0370 76 FLLEGKPDLIVNVVDAT-NLERNLYLTLQLLE 106 (653)
T ss_pred HHhcCCCCEEEEEcccc-hHHHHHHHHHHHHH
Confidence 44456789999999975 66666555555444
No 334
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.09 E-value=1.1e-09 Score=113.65 Aligned_cols=128 Identities=15% Similarity=0.106 Sum_probs=82.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
...+|+|+|.+|+||||++|+|+|...+.+......|.........+.+..+.+|||||+....... .....
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq-~~nee------- 188 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQ-SKNEK------- 188 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccch-HHHHH-------
Confidence 4578999999999999999999998765555543333334444445678899999999998643221 11111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhh--hcCeEEEEeeCCCCCC-cccHHHHHHHHhhcC---CCeEEEEecccCC
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIE--ESCVIIFLVDGQAGLT-AADEEIADWLRKNYM---DKFIILAVNKCES 315 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~--~~d~vilVvD~~~~~~-~~~~~~~~~l~~~~~---~~p~ilV~NK~Dl 315 (484)
+.+.+...+. .+|++|+|........ ..+...++.+...+. -..+|||+|+.|.
T Consensus 189 --------------------ILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~ 248 (763)
T TIGR00993 189 --------------------ILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAAS 248 (763)
T ss_pred --------------------HHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCcc
Confidence 1122223333 3788888876532222 134456666666542 3568999999998
Q ss_pred Cc
Q 011492 316 PR 317 (484)
Q Consensus 316 ~~ 317 (484)
.+
T Consensus 249 lp 250 (763)
T TIGR00993 249 AP 250 (763)
T ss_pred CC
Confidence 75
No 335
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.09 E-value=6.5e-10 Score=123.13 Aligned_cols=115 Identities=22% Similarity=0.258 Sum_probs=83.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecC---------------CCceeeeeEEEEEe----------------CC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE---------------PGVTRDRMYGRSFW----------------GE 210 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~---------------~~~t~~~~~~~~~~----------------~~ 210 (484)
+.++|+|+|+.++|||||+++|+.....+.... .+.|.......+.+ .+
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 478999999999999999999975432111111 12222222222333 25
Q ss_pred ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc
Q 011492 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (484)
Q Consensus 211 ~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~ 290 (484)
..++++||||+.++. ..+...+..+|.+|+|+|+..+.....
T Consensus 98 ~~inliDtPGh~dF~--------------------------------------~e~~~al~~~D~ailVvda~~Gv~~~t 139 (843)
T PLN00116 98 YLINLIDSPGHVDFS--------------------------------------SEVTAALRITDGALVVVDCIEGVCVQT 139 (843)
T ss_pred eEEEEECCCCHHHHH--------------------------------------HHHHHHHhhcCEEEEEEECCCCCcccH
Confidence 568999999996532 345577889999999999999988888
Q ss_pred HHHHHHHHhhcCCCeEEEEecccCCC
Q 011492 291 EEIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 291 ~~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..+++.+... ++|+++++||+|..
T Consensus 140 ~~~~~~~~~~--~~p~i~~iNK~D~~ 163 (843)
T PLN00116 140 ETVLRQALGE--RIRPVLTVNKMDRC 163 (843)
T ss_pred HHHHHHHHHC--CCCEEEEEECCccc
Confidence 8877777665 89999999999987
No 336
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1.5e-10 Score=99.41 Aligned_cols=158 Identities=16% Similarity=0.099 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeee----cCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV----DEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...|+|+|..++|||||+-++-........ .....|...+.+.+.+++..+.+||..|.......
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSl----------- 85 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSL----------- 85 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHH-----------
Confidence 457889999999999999887533110000 12234667777888888889999999998653332
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc--cHHHHHHHHh-hcCCCeEEEEecccCC
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA--DEEIADWLRK-NYMDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~--~~~~~~~l~~-~~~~~p~ilV~NK~Dl 315 (484)
...++..++++++|+|+.++.... ...+...+.+ ...+.|+++.+||.|+
T Consensus 86 ---------------------------w~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~ 138 (197)
T KOG0076|consen 86 ---------------------------WKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDL 138 (197)
T ss_pred ---------------------------HHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhh
Confidence 235668899999999987642221 1122222222 2358999999999998
Q ss_pred CchhhhhhHH-H-------HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 316 PRKGIMQVSE-F-------WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 316 ~~~~~~~~~~-~-------~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
........+. . .....++.|+||.+|+|+++-..++...+.++
T Consensus 139 q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 139 QNAMEAAELDGVFGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhHHHHHHHhhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 7643222221 1 11244788999999999999999998877654
No 337
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.08 E-value=3.9e-10 Score=114.48 Aligned_cols=90 Identities=24% Similarity=0.324 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..|+++|.||||||||+|+|.+.+ .+++..|+||+......+...++..++++||||+..... ....+....
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak-~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~-------~~~gLg~~f 230 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS-------EGVGLGHQF 230 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCC-CccccCCcceeceEEEEEEEeCCceEEEEECCCCccccc-------ccchHHHHH
Confidence 479999999999999999999875 457788999998876666554478899999999975321 111233445
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011492 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
++.+..++++++|+|+++
T Consensus 231 Lrhier~~llI~VID~s~ 248 (424)
T PRK12297 231 LRHIERTRVIVHVIDMSG 248 (424)
T ss_pred HHHHhhCCEEEEEEeCCc
Confidence 567888999999999863
No 338
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.08 E-value=3.8e-10 Score=93.37 Aligned_cols=153 Identities=16% Similarity=0.215 Sum_probs=104.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.+..||+++|-.++||||+++.|.+.......++.|+.. ..+.+.+ .++++||..|....+..+.
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~IRpyWs---------- 80 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGIRPYWS---------- 80 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcce----EEEeecCcEEEEEEecCCccccchhhh----------
Confidence 447899999999999999999999987655555444433 3344444 6899999999876554443
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC--CCcccHHHHHHHHh-hcCCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG--LTAADEEIADWLRK-NYMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~--~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~ 316 (484)
.++.+.|.+|||+|..+. +.....++.+++.. .....|+.+..||.|++
T Consensus 81 ----------------------------NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdll 132 (185)
T KOG0074|consen 81 ----------------------------NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLL 132 (185)
T ss_pred ----------------------------hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHH
Confidence 556788999999996542 22223334444443 22467899999999987
Q ss_pred chhhhhhHH-------HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011492 317 RKGIMQVSE-------FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 317 ~~~~~~~~~-------~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
......... .....+.+-.+||.+++|+..=..++....
T Consensus 133 taa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 133 TAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred hhcchHHHHHhcchhhhhhceEEeeeCccccccCccCcchhhhcCC
Confidence 643222111 111234567889999999998888886643
No 339
>PRK13768 GTPase; Provisional
Probab=99.08 E-value=8.1e-10 Score=105.46 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=58.7
Q ss_pred cCeEEEEeeCCCCCCcccHHHHHHHH---hhcCCCeEEEEecccCCCchhhhhh-HH-----------------------
Q 011492 273 SCVIIFLVDGQAGLTAADEEIADWLR---KNYMDKFIILAVNKCESPRKGIMQV-SE----------------------- 325 (484)
Q Consensus 273 ~d~vilVvD~~~~~~~~~~~~~~~l~---~~~~~~p~ilV~NK~Dl~~~~~~~~-~~----------------------- 325 (484)
.+++++|+|++.+....+.....++. ....++|+++|+||+|+........ ..
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 208 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLS 208 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHH
Confidence 89999999997766555554444432 1124899999999999876432211 11
Q ss_pred ------HHhcC--CCceeeecccCCCCchhhHHHHHHhh
Q 011492 326 ------FWSLG--FSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 326 ------~~~~~--~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+...+ .+++++|++++.|+++++++|.+.+.
T Consensus 209 ~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 209 LELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 11112 47899999999999999999988775
No 340
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.07 E-value=2.1e-09 Score=100.92 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=43.5
Q ss_pred HHHHHHHHhhh-cCeEEEEeeCCCCCCccc-HHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 262 IERQATAAIEE-SCVIIFLVDGQAGLTAAD-EEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 262 ~~~~~~~~~~~-~d~vilVvD~~~~~~~~~-~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
+.+++..++.+ .+++++|+|+..++...+ ..+.+++... +.++++|+||+|.....
T Consensus 151 i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~--~~rti~ViTK~D~~~~~ 208 (240)
T smart00053 151 IKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ--GERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc--CCcEEEEEECCCCCCcc
Confidence 44667777775 569999999987777666 4677777665 88999999999988644
No 341
>PTZ00416 elongation factor 2; Provisional
Probab=99.07 E-value=5.4e-10 Score=123.53 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=83.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCC---------------CceeeeeEEEEEeC----------CceeeEe
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP---------------GVTRDRMYGRSFWG----------EHEFMLV 216 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~---------------~~t~~~~~~~~~~~----------~~~i~li 216 (484)
..++|+++|+.++|||||+++|+........... +.|.......+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 3679999999999999999999864322111111 22222221223333 4568999
Q ss_pred eccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHH
Q 011492 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADW 296 (484)
Q Consensus 217 DtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~ 296 (484)
||||+.++. ..+...+..+|.+|+|+|+..+.......+++.
T Consensus 98 DtPG~~~f~--------------------------------------~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~ 139 (836)
T PTZ00416 98 DSPGHVDFS--------------------------------------SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQ 139 (836)
T ss_pred cCCCHHhHH--------------------------------------HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHH
Confidence 999996521 344577888999999999999988888887777
Q ss_pred HHhhcCCCeEEEEecccCCC
Q 011492 297 LRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 297 l~~~~~~~p~ilV~NK~Dl~ 316 (484)
+... +.|+++++||+|+.
T Consensus 140 ~~~~--~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 140 ALQE--RIRPVLFINKVDRA 157 (836)
T ss_pred HHHc--CCCEEEEEEChhhh
Confidence 7765 78999999999987
No 342
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.07 E-value=3.5e-10 Score=99.75 Aligned_cols=86 Identities=24% Similarity=0.456 Sum_probs=62.7
Q ss_pred EEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHh
Q 011492 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (484)
Q Consensus 376 lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (484)
++|.+|+|||||+|+|.+.. +.++..+|+|++.....+. .++..+.+|||||+.+..... ....+....+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~-----~~~~~~~~~~~~- 72 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFK-LGGKEIEIVDLPGTYSLSPYS-----EDEKVARDFLLG- 72 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEe-eCCeEEEEEECCCccccCCCC-----hhHHHHHHHhcC-
Confidence 57999999999999999975 6677888999987665555 356789999999986543211 111222222222
Q ss_pred hcCcEEEEEEeCcc
Q 011492 456 RRSDVVALVIEAMA 469 (484)
Q Consensus 456 ~~~d~~l~V~~~~~ 469 (484)
+.+|++++|+|+..
T Consensus 73 ~~~d~vi~v~d~~~ 86 (158)
T cd01879 73 EKPDLIVNVVDATN 86 (158)
T ss_pred CCCcEEEEEeeCCc
Confidence 69999999999875
No 343
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=3.6e-10 Score=116.15 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
...|+|||.||+|||||+|+|.+.+ ..++..|+||+......+.. .+.++.|+||||+.+.. .....+...
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~ak-pkIadypfTTl~P~lGvv~~-~~~~f~laDtPGliega-------s~g~gLg~~ 229 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAK-PKIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGA-------SEGKGLGLD 229 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCC-ccccccCcccccceEEEEEE-CCeEEEEEECCCCcccc-------chhhHHHHH
Confidence 3479999999999999999999874 45788899999887766654 45689999999997532 112223345
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011492 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
.++.+..||++++|||+..
T Consensus 230 fLrhieradvLv~VVD~s~ 248 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCAT 248 (500)
T ss_pred HHHHHHhcCEEEEEECCcc
Confidence 5677899999999999863
No 344
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.07 E-value=5.2e-10 Score=106.66 Aligned_cols=146 Identities=25% Similarity=0.299 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcce--------------------------------eeecCCCceeeeeEEEEEe
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA--------------------------------IVVDEPGVTRDRMYGRSFW 208 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~--------------------------------~~~~~~~~t~~~~~~~~~~ 208 (484)
...+|++.+|...-|||||+-+|+-.... ......|.|.+.-+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 34789999999999999999998733100 0112346777777767666
Q ss_pred CCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc
Q 011492 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (484)
Q Consensus 209 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~ 288 (484)
..+++.+.||||+.++.. -.......||+.|+++|++.+...
T Consensus 84 ~KRkFIiADTPGHeQYTR--------------------------------------NMaTGASTadlAIlLVDAR~Gvl~ 125 (431)
T COG2895 84 EKRKFIIADTPGHEQYTR--------------------------------------NMATGASTADLAILLVDARKGVLE 125 (431)
T ss_pred ccceEEEecCCcHHHHhh--------------------------------------hhhcccccccEEEEEEecchhhHH
Confidence 788999999999986432 122345779999999999988776
Q ss_pred ccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh-------HHH-HhcCC---CceeeecccCCCCc
Q 011492 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-------SEF-WSLGF---SPLPISAISGTGTG 345 (484)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-------~~~-~~~~~---~~i~vSa~~g~gi~ 345 (484)
+...+.. +...+.=+.+++.+||+||++...... ..+ ...++ .++|+||..|.|+-
T Consensus 126 QTrRHs~-I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 126 QTRRHSF-IASLLGIRHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HhHHHHH-HHHHhCCcEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 6655433 333333467889999999987432211 111 12233 57999999998874
No 345
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.07 E-value=5.3e-10 Score=102.40 Aligned_cols=95 Identities=15% Similarity=0.175 Sum_probs=72.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCc------ceeec---------CCCCceecccceeeecCCCCcEEEEEcCCCccCccc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGED------RTIVS---------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~------~~~~~---------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~ 436 (484)
.+|+++|+.++|||||+++|++.. ..... ...|+|.+.....+. +++.++.++||||..+
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~---- 77 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHAD---- 77 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHH----
Confidence 479999999999999999998641 10001 135888887766664 4778999999999742
Q ss_pred cCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+..+...+..+|++++|+|+...++.+++.++..
T Consensus 78 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~ 112 (195)
T cd01884 78 ----------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLL 112 (195)
T ss_pred ----------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 24455677889999999999998899888877644
No 346
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.06 E-value=7.3e-10 Score=105.25 Aligned_cols=92 Identities=27% Similarity=0.395 Sum_probs=71.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..++|++.|.||||||||+++|.+.+ .++.+.|-||....-+.+. .++.++-+|||||+.+..+.. .....+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe-~~~~R~QvIDTPGlLDRPl~E------rN~IE~ 238 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFE-RGYLRIQVIDTPGLLDRPLEE------RNEIER 238 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeee-cCCceEEEecCCcccCCChHH------hcHHHH
Confidence 45699999999999999999999975 5688899888876554444 567789999999998865422 222345
Q ss_pred HHHHHhhcC-cEEEEEEeCcc
Q 011492 450 RAFRAIRRS-DVVALVIEAMA 469 (484)
Q Consensus 450 ~~~~~~~~~-d~~l~V~~~~~ 469 (484)
++..+++.. ++++|++|.+.
T Consensus 239 qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 239 QAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred HHHHHHHHhcCeEEEEEcCcc
Confidence 566667654 89999999875
No 347
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.05 E-value=5.1e-10 Score=110.68 Aligned_cols=90 Identities=23% Similarity=0.310 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..|+++|.+|+|||||+|+|.+.. ..++..|+||+......+...++.++.++||||+.+... ....+....
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~-~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~-------~~~gLg~~f 229 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAK-PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGAS-------EGAGLGHRF 229 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCC-ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCc-------ccccHHHHH
Confidence 479999999999999999999864 457788899988877766654448899999999965321 111233445
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011492 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
++.++.+|++++|+|+..
T Consensus 230 lrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 230 LKHIERTRVLLHLIDISP 247 (329)
T ss_pred HHHHHhhCEEEEEEcCcc
Confidence 567889999999999875
No 348
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.05 E-value=1.2e-09 Score=97.62 Aligned_cols=49 Identities=24% Similarity=0.325 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEeccc
Q 011492 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKC 313 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~ 313 (484)
..+..++..+|++|+|+++.......+...+...... ....+++|+||+
T Consensus 120 ~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~-~~~~~i~V~nk~ 168 (168)
T PF00350_consen 120 EITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP-DKSRTIFVLNKA 168 (168)
T ss_dssp HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT-TCSSEEEEEE-G
T ss_pred HHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC-CCCeEEEEEcCC
Confidence 3455677899999999998876666554444333332 245589999985
No 349
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.05 E-value=7.3e-10 Score=98.85 Aligned_cols=115 Identities=26% Similarity=0.343 Sum_probs=62.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe---CCceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---GEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.+.|+|+|++|+|||+|+..|...... +..|.........+ .+..+.++|+||+...+. .+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~-----~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~---~~~------- 67 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV-----PTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRS---KLL------- 67 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS--------B---SSEEEECCGSSTCGTCECEEEETT-HCCCH---HHH-------
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC-----CeeccccCCceEEeecCCCCEEEEEECCCcHHHHH---HHH-------
Confidence 467999999999999999999876321 11111111112222 456799999999975331 110
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHH----HHhh---cCCCeEEEEecc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADW----LRKN---YMDKFIILAVNK 312 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~----l~~~---~~~~p~ilV~NK 312 (484)
........+..+|||+|+... ...-.+..++ |... ....|++|++||
T Consensus 68 -------------------------~~~~~~~~~k~IIfvvDSs~~-~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 68 -------------------------DELKYLSNAKGIIFVVDSSTD-QKELRDVAEYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp -------------------------HHHHHHGGEEEEEEEEETTTH-HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred -------------------------HhhhchhhCCEEEEEEeCccc-hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeC
Confidence 111246789999999997531 1111122222 2221 146789999999
Q ss_pred cCCCch
Q 011492 313 CESPRK 318 (484)
Q Consensus 313 ~Dl~~~ 318 (484)
.|+...
T Consensus 122 ~Dl~~A 127 (181)
T PF09439_consen 122 QDLFTA 127 (181)
T ss_dssp TTSTT-
T ss_pred cccccc
Confidence 998753
No 350
>COG2262 HflX GTPases [General function prediction only]
Probab=99.05 E-value=7e-10 Score=108.59 Aligned_cols=104 Identities=26% Similarity=0.319 Sum_probs=77.3
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
...+.|+++|++|+|||||+|.|.+..+. +.+..-.|-+.....+.+.+|+++.+-||-||.+.-.. .... ..
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~----~LV~--AF 262 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPH----PLVE--AF 262 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCee-ccccccccccCceeEEEeCCCceEEEecCccCcccCCh----HHHH--HH
Confidence 34568999999999999999999987655 33333455555555666777899999999999864221 2233 34
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 449 NRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
+.++.+...+|++|+|||++++...+....+
T Consensus 263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v 293 (411)
T COG2262 263 KSTLEEVKEADLLLHVVDASDPEILEKLEAV 293 (411)
T ss_pred HHHHHHhhcCCEEEEEeecCChhHHHHHHHH
Confidence 7777889999999999999998665555444
No 351
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4e-09 Score=104.03 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=116.5
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcc--eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNR--AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.|+..|+-..|||||+.+++|... .......|+|.+..+......+..+.++|.||+..+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~------------------ 63 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDF------------------ 63 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHH------------------
Confidence 588999999999999999998742 223345688888888888888889999999999652
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
.+-+.+.+...|..++|+++.+++..+..+.+..|... .....++|+||+|..+.....
T Consensus 64 --------------------i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll-gi~~giivltk~D~~d~~r~e 122 (447)
T COG3276 64 --------------------ISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL-GIKNGIIVLTKADRVDEARIE 122 (447)
T ss_pred --------------------HHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc-CCCceEEEEeccccccHHHHH
Confidence 13445666778999999999888888888877766554 334569999999998743211
Q ss_pred -----hHHHHh-cCCCceeeecccCCCCchhhHHHHHHhh
Q 011492 323 -----VSEFWS-LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 323 -----~~~~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...... ...+++.+|+.+|+|+++|.+.|.+...
T Consensus 123 ~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 123 QKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 111111 2346799999999999999999988774
No 352
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.04 E-value=5.9e-10 Score=121.67 Aligned_cols=115 Identities=23% Similarity=0.256 Sum_probs=80.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce---------eeec------CCCceeeeeEE----EEEeCCceeeEeecccccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---------IVVD------EPGVTRDRMYG----RSFWGEHEFMLVDTGGVLN 223 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~---------~~~~------~~~~t~~~~~~----~~~~~~~~i~liDtpG~~~ 223 (484)
.++|+++|+.++|||||+++|+..... ...+ ..+.|...... ...+.+..+.+|||||+..
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 679999999999999999998632100 0001 12333332211 2345667899999999975
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011492 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ..+..++..+|.+++|+|+..+.......++..+... +
T Consensus 99 f~--------------------------------------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~--~ 138 (720)
T TIGR00490 99 FG--------------------------------------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE--N 138 (720)
T ss_pred cH--------------------------------------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc--C
Confidence 22 2345678899999999999888777766666665554 7
Q ss_pred CeEEEEecccCCCc
Q 011492 304 KFIILAVNKCESPR 317 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~ 317 (484)
.|+++|+||+|...
T Consensus 139 ~p~ivviNKiD~~~ 152 (720)
T TIGR00490 139 VKPVLFINKVDRLI 152 (720)
T ss_pred CCEEEEEEChhccc
Confidence 78899999999763
No 353
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.03 E-value=1.3e-09 Score=97.21 Aligned_cols=91 Identities=27% Similarity=0.388 Sum_probs=59.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
++|+++|.+|+|||||+|+|.+... .+...+++|+........ .++.++.+|||||+.+..... . .......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~-----~-~~~~~~~ 72 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEE-----R-NTIEMQA 72 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEc-cCceEEEEEECCCcCCccccC-----C-chHHHHH
Confidence 3789999999999999999999753 345566777665443433 356789999999985432111 0 0000111
Q ss_pred HHHh-hcCcEEEEEEeCccc
Q 011492 452 FRAI-RRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~-~~~d~~l~V~~~~~~ 470 (484)
...+ ..+|++++|+|+...
T Consensus 73 ~~~~~~~~d~~l~v~d~~~~ 92 (168)
T cd01897 73 ITALAHLRAAVLFLFDPSET 92 (168)
T ss_pred HHHHHhccCcEEEEEeCCcc
Confidence 1122 236899999999764
No 354
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.02 E-value=9.9e-10 Score=103.64 Aligned_cols=88 Identities=28% Similarity=0.410 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+++++|.+|+|||||+|.|.|.. ..++..+++|.+.....+. +++.++.++||||+.+... ..........
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~-~~v~~~~~tT~~~~~g~~~-~~~~~i~l~DtpG~~~~~~-------~~~~~~~~~l 72 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLE-YKGAKIQLLDLPGIIEGAA-------DGKGRGRQVI 72 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-ccccCCCCccccceEEEEE-ECCeEEEEEECCCcccccc-------cchhHHHHHH
Confidence 68999999999999999999975 3466778888777655544 4678899999999865321 1112233445
Q ss_pred HHhhcCcEEEEEEeCcc
Q 011492 453 RAIRRSDVVALVIEAMA 469 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~ 469 (484)
..++.+|++++|+|+.+
T Consensus 73 ~~~~~ad~il~V~D~t~ 89 (233)
T cd01896 73 AVARTADLILMVLDATK 89 (233)
T ss_pred HhhccCCEEEEEecCCc
Confidence 67899999999999864
No 355
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.1e-09 Score=99.99 Aligned_cols=154 Identities=21% Similarity=0.181 Sum_probs=98.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCC--ccee----eecCCCceeeeeEEEEEeC---------CceeeEeeccccccccCC
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGG--NRAI----VVDEPGVTRDRMYGRSFWG---------EHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~--~~~~----~~~~~~~t~~~~~~~~~~~---------~~~i~liDtpG~~~~~~~ 227 (484)
.++++++|+..+|||||.++|... ..+. .+...+.|.+.-...+... ..+++++|+||+-.
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 578999999999999999999743 1111 1222344444433333221 12469999999854
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEE
Q 011492 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFII 307 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~i 307 (484)
+.|..+......|+.++|+|+..+...+..+.+-.- + ..-...+
T Consensus 83 ----------------------------------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig-~-~~c~klv 126 (522)
T KOG0461|consen 83 ----------------------------------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIG-E-LLCKKLV 126 (522)
T ss_pred ----------------------------------HHHHHHhhhheeeeeeEEEehhcccccccchhhhhh-h-hhccceE
Confidence 225566677788999999999877666555433211 1 1245678
Q ss_pred EEecccCCCchhhhhh-H---------HHHh----cCCCceeeecccC----CCCchhhHHHHHHhh
Q 011492 308 LAVNKCESPRKGIMQV-S---------EFWS----LGFSPLPISAISG----TGTGELLDLVCSELK 356 (484)
Q Consensus 308 lV~NK~Dl~~~~~~~~-~---------~~~~----~~~~~i~vSa~~g----~gi~~L~~~i~~~l~ 356 (484)
+|+||+|..+...+.. + .+.. .+.|++++||..| +++.+|.+.+...+.
T Consensus 127 vvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if 193 (522)
T KOG0461|consen 127 VVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIF 193 (522)
T ss_pred EEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhc
Confidence 8999999876532211 0 0111 1348999999999 677777777776654
No 356
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=2.5e-09 Score=88.33 Aligned_cols=149 Identities=18% Similarity=0.190 Sum_probs=98.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
-.++..|+|.-|+|||.|+..++.++ ...+.|++- .......+.+.|. ++.+|||+|...++
T Consensus 10 yifkyiiigdmgvgkscllhqftekk--fmadcphtigvefgtriievsgqkiklqiwdtagqerfr------------- 74 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR------------- 74 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHH--HhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHH-------------
Confidence 36788999999999999999998654 233444321 2222233445554 57899999987533
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh----cCCCeEEEEecccC
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN----YMDKFIILAVNKCE 314 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~----~~~~p~ilV~NK~D 314 (484)
...+.+++.+-..++|+|+....+.. .+..||... .++..++++.||.|
T Consensus 75 -------------------------avtrsyyrgaagalmvyditrrstyn--hlsswl~dar~ltnpnt~i~lignkad 127 (215)
T KOG0097|consen 75 -------------------------AVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKAD 127 (215)
T ss_pred -------------------------HHHHHHhccccceeEEEEehhhhhhh--hHHHHHhhhhccCCCceEEEEecchhh
Confidence 34556778888899999986543322 233444432 24566888999999
Q ss_pred CCchhhhhhH---HH-HhcCCCceeeecccCCCCchhhHHHH
Q 011492 315 SPRKGIMQVS---EF-WSLGFSPLPISAISGTGTGELLDLVC 352 (484)
Q Consensus 315 l~~~~~~~~~---~~-~~~~~~~i~vSa~~g~gi~~L~~~i~ 352 (484)
+..+...... .+ ...+.-+++.||++|.++++.+-.-.
T Consensus 128 le~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a 169 (215)
T KOG0097|consen 128 LESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA 169 (215)
T ss_pred hhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence 9765433222 22 23466788999999999987664433
No 357
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.01 E-value=2e-09 Score=100.39 Aligned_cols=122 Identities=13% Similarity=0.099 Sum_probs=74.4
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEE-eCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
||+++|+.++||||+.+.+.+...+......+.|.......+. .....+.+||.||........
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~--------------- 65 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY--------------- 65 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT---------------
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc---------------
Confidence 7999999999999999999976433333444566666655554 345689999999986533221
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH----HHHHHHhhcCCCeEEEEecccCCCchh
Q 011492 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~----~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
+..+....+.++.++|||+|+.......+.. .+..+.+..++..+.+.++|+|+....
T Consensus 66 ------------------~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 66 ------------------FNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp ------------------HTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred ------------------ccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 0011224568899999999987433222222 223344556889999999999998644
No 358
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.01 E-value=7.6e-10 Score=101.07 Aligned_cols=164 Identities=24% Similarity=0.232 Sum_probs=113.5
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
......+|+++|.|.+||||++..|+|.. ..+..+.++|..++.+...+.+.++.+.|.||+...........
T Consensus 55 ~ktg~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg------ 127 (358)
T KOG1487|consen 55 AKTGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG------ 127 (358)
T ss_pred eeecceeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc------
Confidence 34456699999999999999999999875 55677888999999999999999999999999987655443322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc-----------------------------
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA----------------------------- 289 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~----------------------------- 289 (484)
++.++..+.|.++++|+|...|+.+.
T Consensus 128 -------------------------~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkg 182 (358)
T KOG1487|consen 128 -------------------------KQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKG 182 (358)
T ss_pred -------------------------cEEEEEeecccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccC
Confidence 44556667788888888844333221
Q ss_pred ---------cHHHHHH-HHh-------------------------hcCCCeEEEEecccCCCchhhhhhHHHHhcCCCce
Q 011492 290 ---------DEEIADW-LRK-------------------------NYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPL 334 (484)
Q Consensus 290 ---------~~~~~~~-l~~-------------------------~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i 334 (484)
+...... +.+ ...-.|.+.++||+|...-+... +.......+
T Consensus 183 GInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd---ii~~iphav 259 (358)
T KOG1487|consen 183 GINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD---IIYTIPHAV 259 (358)
T ss_pred ceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeeeeeecccceeeeeccc---eeeecccee
Confidence 1111111 110 00124677888888865432221 222233578
Q ss_pred eeecccCCCCchhhHHHHHHhhh
Q 011492 335 PISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 335 ~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
++||.+++++++|++.+.+++.-
T Consensus 260 pISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 260 PISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred ecccccccchHHHHHHHhhcchh
Confidence 99999999999999999888753
No 359
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.00 E-value=3.7e-09 Score=97.93 Aligned_cols=168 Identities=23% Similarity=0.306 Sum_probs=110.3
Q ss_pred cccCCCCCCCCeEEEEcCCCCChhHHHHHHhCCcce--eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchh
Q 011492 154 TIGNVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 154 ~~~~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~ 231 (484)
.....++...++++++|.+|+|||+|+|.++..... .....++.|+.... ..-+..+.++|.||+....-.
T Consensus 127 ~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~---f~v~~~~~~vDlPG~~~a~y~---- 199 (320)
T KOG2486|consen 127 TAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINH---FHVGKSWYEVDLPGYGRAGYG---- 199 (320)
T ss_pred eeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeee---eeccceEEEEecCCcccccCC----
Confidence 344556677899999999999999999999876431 12225566655544 223678999999995321100
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHH---hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEE
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA---IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIIL 308 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~---~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~il 308 (484)
.+ +.+.+......+ -.+.-.+++++|+..++...|...+.|+.+. +.|+.+
T Consensus 200 ----------------~~--------~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~--~VP~t~ 253 (320)
T KOG2486|consen 200 ----------------FE--------LPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN--NVPMTS 253 (320)
T ss_pred ----------------cc--------CcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc--CCCeEE
Confidence 00 000011111111 1244557888999999999999999999997 999999
Q ss_pred EecccCCCchhh--------hhhHHHH-------hcCCCceeeecccCCCCchhhHHHHHH
Q 011492 309 AVNKCESPRKGI--------MQVSEFW-------SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 309 V~NK~Dl~~~~~--------~~~~~~~-------~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
|+||||...... .....+. ....|++.+|+.++.|++.|+-.+.+.
T Consensus 254 vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 254 VFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 999999654211 1111111 123366789999999999998777654
No 360
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=1.4e-09 Score=102.46 Aligned_cols=159 Identities=17% Similarity=0.122 Sum_probs=101.0
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeec--CCCceee-------------ee-------EEEEEeC------Cce
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD--EPGVTRD-------------RM-------YGRSFWG------EHE 212 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~--~~~~t~~-------------~~-------~~~~~~~------~~~ 212 (484)
....+|+++|+...|||||..+|.|.-...-+. ..+.|.. |. ......+ -+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 346799999999999999999999751100000 0011100 00 0001111 135
Q ss_pred eeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc-ccH
Q 011492 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA-ADE 291 (484)
Q Consensus 213 i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~-~~~ 291 (484)
+.++|.||++- ++ .-.+......|..++|+.+.++... +..
T Consensus 88 VSfVDaPGHe~-------LM-------------------------------ATMLsGAAlMDgAlLvIaANEpcPQPQT~ 129 (415)
T COG5257 88 VSFVDAPGHET-------LM-------------------------------ATMLSGAALMDGALLVIAANEPCPQPQTR 129 (415)
T ss_pred EEEeeCCchHH-------HH-------------------------------HHHhcchhhhcceEEEEecCCCCCCCchH
Confidence 78999999853 22 1223445667999999999887554 344
Q ss_pred HHHHHHHhhcCCCeEEEEecccCCCchhhhh-----hHHHHh----cCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 292 EIADWLRKNYMDKFIILAVNKCESPRKGIMQ-----VSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 292 ~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-----~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+++-.|.- +.-+.+++|-||+|++..+... ...|.+ .+.|++|+||..+.|++.|++.|.++++..
T Consensus 130 EHl~AleI-igik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 130 EHLMALEI-IGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred HHHHHHhh-hccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 44443332 2346789999999998754321 122322 345899999999999999999999998744
No 361
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.00 E-value=2.4e-09 Score=95.41 Aligned_cols=92 Identities=18% Similarity=0.215 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC--CCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~--~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.|+++|.+|+|||||+|+|.+.... ....+++|++......... .+..+.++||||.... .. .
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~----------~~----~ 66 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAF----------TN----M 66 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHH----------HH----H
Confidence 5899999999999999999986533 3344566766544444432 3678999999997321 01 1
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
.....+.+|++++|+|+......+....+
T Consensus 67 ~~~~~~~~d~il~v~d~~~~~~~~~~~~~ 95 (168)
T cd01887 67 RARGASLTDIAILVVAADDGVMPQTIEAI 95 (168)
T ss_pred HHHHHhhcCEEEEEEECCCCccHHHHHHH
Confidence 12345789999999999876666555444
No 362
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.98 E-value=9e-10 Score=108.81 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=84.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcc-----eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.++|+++|.+|+|||||+|+|.|-.. +.++. ..+|....... .-.-.++.+||.||+.........|..++
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv-~etT~~~~~Y~-~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~-- 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGV-VETTMEPTPYP-HPKFPNVTLWDLPGIGTPNFPPEEYLKEV-- 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSS-HSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHT--
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCC-CcCCCCCeeCC-CCCCCCCeEEeCCCCCCCCCCHHHHHHHc--
Confidence 56899999999999999999987421 11111 12233332222 12234699999999976443333333221
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC-
Q 011492 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP- 316 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~- 316 (484)
.+...|.+|++.+ ..+...+..+.+.+.+. ++++++|-+|+|..
T Consensus 111 -------------------------------~~~~yD~fiii~s--~rf~~ndv~La~~i~~~--gK~fyfVRTKvD~Dl 155 (376)
T PF05049_consen 111 -------------------------------KFYRYDFFIIISS--ERFTENDVQLAKEIQRM--GKKFYFVRTKVDSDL 155 (376)
T ss_dssp -------------------------------TGGG-SEEEEEES--SS--HHHHHHHHHHHHT--T-EEEEEE--HHHHH
T ss_pred -------------------------------cccccCEEEEEeC--CCCchhhHHHHHHHHHc--CCcEEEEEecccccH
Confidence 2466898888776 45777778888888886 99999999999951
Q ss_pred -ch-----------hhhhhH------HHHhcCC---Cceeeeccc--CCCCchhhHHHHHHhhhc
Q 011492 317 -RK-----------GIMQVS------EFWSLGF---SPLPISAIS--GTGTGELLDLVCSELKKV 358 (484)
Q Consensus 317 -~~-----------~~~~~~------~~~~~~~---~~i~vSa~~--g~gi~~L~~~i~~~l~~~ 358 (484)
.. ...+.. .+...+. ++|.+|+.. .+....|.+.+...++..
T Consensus 156 ~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 156 YNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp HHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred hhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 10 111111 1122233 578888865 344566777776655543
No 363
>PTZ00099 rab6; Provisional
Probab=98.98 E-value=2e-09 Score=97.02 Aligned_cols=91 Identities=15% Similarity=0.081 Sum_probs=61.0
Q ss_pred HHhhhcCeEEEEeeCCCCCCcccH-HHHHHH-HhhcCCCeEEEEecccCCCchhhh---hhHH-HHhcCCCceeeecccC
Q 011492 268 AAIEESCVIIFLVDGQAGLTAADE-EIADWL-RKNYMDKFIILAVNKCESPRKGIM---QVSE-FWSLGFSPLPISAISG 341 (484)
Q Consensus 268 ~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l-~~~~~~~p~ilV~NK~Dl~~~~~~---~~~~-~~~~~~~~i~vSa~~g 341 (484)
.++..+|++|+|+|.+.+.+.... .++..+ .....+.|+++|+||+|+...... .... ....+..++++||++|
T Consensus 48 ~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g 127 (176)
T PTZ00099 48 SYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAG 127 (176)
T ss_pred HHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 456889999999998775433322 223323 222246788999999998642111 1111 1234556789999999
Q ss_pred CCCchhhHHHHHHhhhc
Q 011492 342 TGTGELLDLVCSELKKV 358 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~ 358 (484)
.|+.++++++.+.+++.
T Consensus 128 ~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 128 HNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999887653
No 364
>PRK04213 GTP-binding protein; Provisional
Probab=98.98 E-value=1.3e-09 Score=100.46 Aligned_cols=91 Identities=27% Similarity=0.434 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHH--HH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL--SV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~--~~ 448 (484)
..+|+++|.+|+|||||+|+|.+.. +.++..+|+|++...... .++.+|||||+.....+. ....+.+ ..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~-----~~~~l~Dt~G~~~~~~~~--~~~~~~~~~~~ 80 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDW-----GDFILTDLPGFGFMSGVP--KEVQEKIKDEI 80 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEee-----cceEEEeCCccccccccC--HHHHHHHHHHH
Confidence 4689999999999999999999976 667788899987644322 268999999974321110 0001111 11
Q ss_pred HHHHH-HhhcCcEEEEEEeCcc
Q 011492 449 NRAFR-AIRRSDVVALVIEAMA 469 (484)
Q Consensus 449 ~~~~~-~~~~~d~~l~V~~~~~ 469 (484)
...+. .+..++++++|+|+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCcc
Confidence 22222 4567799999999864
No 365
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.97 E-value=2e-09 Score=117.29 Aligned_cols=94 Identities=23% Similarity=0.400 Sum_probs=69.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|++|+|||||+|+|.|.. ..++..+|+|++.....+. +.+.++.++||||+.+....... ....+.+.+.
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~-~~vgn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~--~s~~E~i~~~ 79 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQ--TSLDEQIACH 79 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCceEeeEEEEEE-cCceEEEEEECCCcccccccccc--ccHHHHHHHH
Confidence 479999999999999999999985 4789999999987776665 46778999999999765321111 1112222333
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011492 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+.....+|++++|+|+..
T Consensus 80 ~l~~~~aD~vI~VvDat~ 97 (772)
T PRK09554 80 YILSGDADLLINVVDASN 97 (772)
T ss_pred HHhccCCCEEEEEecCCc
Confidence 334468999999999864
No 366
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.97 E-value=1.8e-09 Score=96.58 Aligned_cols=96 Identities=24% Similarity=0.312 Sum_probs=63.7
Q ss_pred EEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceee---------------------------------------
Q 011492 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEF--------------------------------------- 414 (484)
Q Consensus 374 i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~--------------------------------------- 414 (484)
|+++|..++|||||+|+|+|...+.++..+.|.. .+....
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAV-PTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSS-EEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccc-eeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 6899999999999999999987665554442111 111100
Q ss_pred ----------------ecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 415 ----------------TGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 415 ----------------~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
.......+.||||||+.+.... .. .-+...++.+|++|+|+++.+.++..+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~-------~~---~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~ 149 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSE-------HT---EITEEYLPKADVVIFVVDANQDLTESDMEF 149 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTT-------TS---HHHHHHHSTTEEEEEEEETTSTGGGHHHHH
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhh-------hH---HHHHHhhccCCEEEEEeccCcccchHHHHH
Confidence 0111256899999999763211 11 223345589999999999999898777766
Q ss_pred hh
Q 011492 479 DH 480 (484)
Q Consensus 479 ~~ 480 (484)
+.
T Consensus 150 l~ 151 (168)
T PF00350_consen 150 LK 151 (168)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 367
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.96 E-value=6.6e-09 Score=102.08 Aligned_cols=83 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh----hh-HHHHh--------cCCCceee
Q 011492 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM----QV-SEFWS--------LGFSPLPI 336 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~-~~~~~--------~~~~~i~v 336 (484)
...+|++++|++... ..+..... .......-++|+||+|+...... .. ..... ...+++++
T Consensus 167 ~~~aD~vlvv~~p~~---gd~iq~~k---~gi~E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~v 240 (332)
T PRK09435 167 AGMVDFFLLLQLPGA---GDELQGIK---KGIMELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTC 240 (332)
T ss_pred HHhCCEEEEEecCCc---hHHHHHHH---hhhhhhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEE
Confidence 467999999976322 22222211 11112334899999998763211 11 11111 11378899
Q ss_pred ecccCCCCchhhHHHHHHhhhc
Q 011492 337 SAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 337 Sa~~g~gi~~L~~~i~~~l~~~ 358 (484)
||+++.|+++|++.+.++++..
T Consensus 241 SA~~g~GIdeL~~~I~~~~~~l 262 (332)
T PRK09435 241 SALEGEGIDEIWQAIEDHRAAL 262 (332)
T ss_pred ECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999877643
No 368
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.96 E-value=2.2e-09 Score=105.29 Aligned_cols=88 Identities=28% Similarity=0.265 Sum_probs=64.9
Q ss_pred EEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec--------------------C---CCCcEEEEEcCCC
Q 011492 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------P---EGQKFRLIDTAGI 430 (484)
Q Consensus 374 i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~--------------------~---~g~~i~liDTPG~ 430 (484)
|+++|.+|||||||+|+|.+.. +.++..|++|++........ . .+.++.++||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~-~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLAD-VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCC-CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5799999999999999999876 47788888887765433221 1 2246899999999
Q ss_pred ccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011492 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
.... ....-+....+..++.+|++++|+|+.+
T Consensus 80 v~ga-------~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 80 VPGA-------HEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 6431 1122234566778999999999999863
No 369
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.96 E-value=2.9e-09 Score=116.61 Aligned_cols=115 Identities=21% Similarity=0.260 Sum_probs=80.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeec---------------CCCceeeeeEEEEEe----CCceeeEeeccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD---------------EPGVTRDRMYGRSFW----GEHEFMLVDTGGVL 222 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~---------------~~~~t~~~~~~~~~~----~~~~i~liDtpG~~ 222 (484)
+.++|+++|+.++|||||+.+|+.....+... ..+.|.......+.+ .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 47789999999999999999997432111110 112233322222233 35668999999997
Q ss_pred cccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC
Q 011492 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (484)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~ 302 (484)
++. ..+...+..+|.+++|+|+..+.......++..+...
T Consensus 99 df~--------------------------------------~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-- 138 (731)
T PRK07560 99 DFG--------------------------------------GDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-- 138 (731)
T ss_pred ChH--------------------------------------HHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc--
Confidence 531 3445777889999999999888777777776665544
Q ss_pred CCeEEEEecccCCC
Q 011492 303 DKFIILAVNKCESP 316 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~ 316 (484)
+.|.++++||+|..
T Consensus 139 ~~~~iv~iNK~D~~ 152 (731)
T PRK07560 139 RVKPVLFINKVDRL 152 (731)
T ss_pred CCCeEEEEECchhh
Confidence 67889999999975
No 370
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.95 E-value=1.8e-09 Score=96.83 Aligned_cols=153 Identities=17% Similarity=0.159 Sum_probs=106.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-Cce--eeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..+++++|..++|||+|+..++.. .....+..+..+.....+.++ |.. +.+|||+|..+......
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~--~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRp---------- 71 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTN--AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRP---------- 71 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccC--cCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccc----------
Confidence 578999999999999999888754 233444444455555666774 654 68999999987544322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCc
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
-.+..+|+++++++...+.+..+ ..++..+.+..++.|+++|++|.||.+
T Consensus 72 ----------------------------lsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 72 ----------------------------LSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred ----------------------------cCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 14567899999898777655543 345566777778999999999999874
Q ss_pred hh-hhhh--------------HH-HHhcC-CCceeeecccCCCCchhhHHHHHHh
Q 011492 318 KG-IMQV--------------SE-FWSLG-FSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~-~~~~--------------~~-~~~~~-~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. ..+. .. ....| ..++++||++..|+.++++......
T Consensus 124 d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 124 DPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAA 178 (198)
T ss_pred CHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHH
Confidence 21 1000 00 11223 4689999999999999887665543
No 371
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.95 E-value=3.5e-09 Score=106.47 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=49.4
Q ss_pred CCchhHHHHHHhhchHHHH-HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC--CC-eEEEEecccC
Q 011492 245 GIPLATREAAVARMPSMIE-RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM--DK-FIILAVNKCE 314 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~--~~-p~ilV~NK~D 314 (484)
|+..+...+++..+++.+. |.+++...-...-++++| +|..++|.+...||.+++. .. +++|+.+-.|
T Consensus 209 gf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLD--EPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QD 280 (614)
T KOG0927|consen 209 GFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLD--EPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQD 280 (614)
T ss_pred CCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEec--CCccCCCHHHHHHHHHHHHhccCceEEEEecchh
Confidence 7788888899999965554 556666666777788888 8999999988877776542 34 4666655555
No 372
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.3e-09 Score=112.46 Aligned_cols=119 Identities=22% Similarity=0.252 Sum_probs=92.8
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcce-----ee------------ecCCCceeeeeEEEEEeCC-ceeeEeeccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----IV------------VDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVL 222 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~-----~~------------~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~ 222 (484)
.+.++|+|+||.++|||||..+|+-.... .+ ....|.|.........|.+ ..++++|||||.
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 35789999999999999999998632100 00 1123556666666778886 999999999998
Q ss_pred cccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC
Q 011492 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM 302 (484)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~ 302 (484)
++. ..+.++++.+|.+++|+|+..+...+...+++.+.++
T Consensus 88 DFt--------------------------------------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-- 127 (697)
T COG0480 88 DFT--------------------------------------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-- 127 (697)
T ss_pred ccH--------------------------------------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc--
Confidence 754 3455788899999999999999988888888877776
Q ss_pred CCeEEEEecccCCCchh
Q 011492 303 DKFIILAVNKCESPRKG 319 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~ 319 (484)
+.|.++++||+|.....
T Consensus 128 ~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 128 GVPRILFVNKMDRLGAD 144 (697)
T ss_pred CCCeEEEEECccccccC
Confidence 89999999999976543
No 373
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.95 E-value=3.9e-09 Score=92.39 Aligned_cols=95 Identities=35% Similarity=0.506 Sum_probs=71.6
Q ss_pred EEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHh
Q 011492 376 IVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI 455 (484)
Q Consensus 376 lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (484)
++|++|+|||||+|+|.+.........+++|............+..+.++||||+...... ............
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~-------~~~~~~~~~~~~ 73 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL-------GREREELARRVL 73 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc-------hhhHHHHHHHHH
Confidence 5799999999999999998777677778888877766665444678999999999765321 111123344567
Q ss_pred hcCcEEEEEEeCcccccHHhhh
Q 011492 456 RRSDVVALVIEAMACITEQADW 477 (484)
Q Consensus 456 ~~~d~~l~V~~~~~~~~~~d~~ 477 (484)
+.+|++++|+|+..........
T Consensus 74 ~~~d~il~v~~~~~~~~~~~~~ 95 (163)
T cd00880 74 ERADLILFVVDADLRADEEEEK 95 (163)
T ss_pred HhCCEEEEEEeCCCCCCHHHHH
Confidence 8899999999998877766654
No 374
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.94 E-value=3.2e-09 Score=102.21 Aligned_cols=94 Identities=20% Similarity=0.193 Sum_probs=70.1
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcce--e---ec------------CCCCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRT--I---VS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~--~---~~------------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
+|+++|++|+|||||+|+|+..... . +. ...|+|++.....+. +.+.++.+|||||..++
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHH--
Confidence 4799999999999999999742111 1 11 123777777666665 46789999999997532
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
...+...++.+|++++|+|+...+..++..+++.
T Consensus 78 ------------~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~ 111 (270)
T cd01886 78 ------------TIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQ 111 (270)
T ss_pred ------------HHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHH
Confidence 1235567889999999999999998888877654
No 375
>CHL00071 tufA elongation factor Tu
Probab=98.93 E-value=3.5e-09 Score=108.39 Aligned_cols=97 Identities=18% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCccee---------------ecCCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI---------------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~---------------~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
...+|+++|++++|||||+|+|++..... .....|+|++.....+. .++.++.++||||..+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~~-- 87 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHAD-- 87 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChHH--
Confidence 34689999999999999999999752211 01126899988766654 4678899999999632
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+..+...+..+|++++|+|+...+..+++..+..
T Consensus 88 ------------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~ 122 (409)
T CHL00071 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILL 122 (409)
T ss_pred ------------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 24555677889999999999999898888877644
No 376
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.92 E-value=3.6e-09 Score=106.96 Aligned_cols=89 Identities=29% Similarity=0.280 Sum_probs=66.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec--------------------CC---CCcEEEEEcC
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PE---GQKFRLIDTA 428 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~--------------------~~---g~~i~liDTP 428 (484)
.+|+++|.+|+|||||+|+|.+.. +.++..|++|++........ .+ ..++.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~-~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLAD-VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc-ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 379999999999999999999875 46677888888766543221 11 2457899999
Q ss_pred CCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011492 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 429 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
|+.... .....+....+..++.+|++++|+|+.
T Consensus 81 Gl~~ga-------~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGA-------HEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCc-------cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 997532 112234556778899999999999986
No 377
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.90 E-value=5e-09 Score=95.97 Aligned_cols=91 Identities=23% Similarity=0.272 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCchhHHHhhhcCc------ceeecCCCCceecccceeeecC-------------CCCcEEEEEcCCCccC
Q 011492 373 AIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTRDAIDTEFTGP-------------EGQKFRLIDTAGIRKR 433 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~------~~~~~~~~gtt~~~~~~~~~~~-------------~g~~i~liDTPG~~~~ 433 (484)
+|+++|.+|+|||||+|+|++.. .......+|+|++.....+... .+..+.+|||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 68999999999999999999741 1112223467776654444321 266899999999731
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhh
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADW 477 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~ 477 (484)
....++...+.+|++++|+|+....+.++..
T Consensus 81 -------------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~ 111 (192)
T cd01889 81 -------------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAE 111 (192)
T ss_pred -------------HHHHHHHHHhhCCEEEEEEECCCCccHHHHH
Confidence 2344556678899999999998877666543
No 378
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.89 E-value=5e-09 Score=95.22 Aligned_cols=93 Identities=22% Similarity=0.242 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeec---------------CCCCceecccceeeecCCCCcEEEEEcCCCccCcccc
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVS---------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIA 437 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~---------------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~ 437 (484)
+|+++|.+|+|||||+|+|++....... ...|+|.+....... ..+.++.+|||||..+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHH----
Confidence 4899999999999999999987544322 123445444333333 24667899999997421
Q ss_pred CCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 438 SSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.......++.+|++++|+|+......++...+.
T Consensus 76 ----------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~ 108 (189)
T cd00881 76 ----------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLR 108 (189)
T ss_pred ----------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHH
Confidence 112334567999999999998877766665553
No 379
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.89 E-value=5.3e-09 Score=96.24 Aligned_cols=98 Identities=21% Similarity=0.265 Sum_probs=61.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCC-CC---ceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPI-SG---TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~-~g---tt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
.+|+++|.+|+|||||+|+|+|......+.. .| +|+... .+.......+.+|||||+..... ....+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~------~~~~~- 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPKFPNVTLWDLPGIGSTAF------PPDDY- 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCCCCCceEEeCCCCCcccC------CHHHH-
Confidence 3789999999999999999999543221111 12 333321 12212345789999999975321 12222
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 448 VNRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
+.. ..+..+|++++|.+ .+|+..|.+.++.+
T Consensus 73 l~~--~~~~~~d~~l~v~~--~~~~~~d~~~~~~l 103 (197)
T cd04104 73 LEE--MKFSEYDFFIIISS--TRFSSNDVKLAKAI 103 (197)
T ss_pred HHH--hCccCcCEEEEEeC--CCCCHHHHHHHHHH
Confidence 111 23567899999854 58999998887543
No 380
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.87 E-value=3.5e-09 Score=109.23 Aligned_cols=94 Identities=22% Similarity=0.308 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec------------------------------CCCCceecccceeeecCCCC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~g~ 420 (484)
..+|+++|+.++|||||+|+|+......+. ..+|+|++.....+. .++.
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~-~~~~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFE-TDKY 84 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEe-cCCe
Confidence 458999999999999999999954332211 146999998877766 4678
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc--cccHHhhhhh
Q 011492 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA--CITEQADWRD 479 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~--~~~~~d~~~~ 479 (484)
++.+|||||..+.. ..+...++.+|++++|+|+.. .+..++++.+
T Consensus 85 ~i~liDtpG~~~~~--------------~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~ 131 (425)
T PRK12317 85 YFTIVDCPGHRDFV--------------KNMITGASQADAAVLVVAADDAGGVMPQTREHV 131 (425)
T ss_pred EEEEEECCCcccch--------------hhHhhchhcCCEEEEEEEcccCCCCCcchHHHH
Confidence 99999999974321 123344678999999999987 6655555443
No 381
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.86 E-value=8.2e-09 Score=91.61 Aligned_cols=101 Identities=28% Similarity=0.252 Sum_probs=64.2
Q ss_pred EEEEcCCCCCchhHHHhhhc-CcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhH--HHHHH
Q 011492 374 IAIVGRPNVGKSSILNALVG-EDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA--LSVNR 450 (484)
Q Consensus 374 i~lvG~~g~GKSTLiN~Llg-~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~--~~~~~ 450 (484)
|+++|.+|+|||||+|.|.+ .........+++|+...... ....+.++||||+..... . ...... .....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~~~D~~g~~~~~~-~--~~~~~~~~~~~~~ 74 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFN----VNDKFRLVDLPGYGYAKV-S--KEVKEKWGKLIEE 74 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEE----ccCeEEEecCCCcccccc-C--HHHHHHHHHHHHH
Confidence 78999999999999999994 44445566667766542222 123889999999854311 0 001111 12233
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+......+++++|+|....++..+..+.++
T Consensus 75 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~ 105 (170)
T cd01876 75 YLENRENLKGVVLLIDSRHGPTEIDLEMLDW 105 (170)
T ss_pred HHHhChhhhEEEEEEEcCcCCCHhHHHHHHH
Confidence 3334446689999999887777776665544
No 382
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.86 E-value=1e-08 Score=94.10 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=63.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCc-ceeec--------------CCCCceecccceeeecCCCCcEEEEEcCCCccCccc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGED-RTIVS--------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~--------------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~ 436 (484)
.+|+++|.+|+|||||+|.|++.. .+... ...|+|.......+. +.+..+.+|||||..+..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~-- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHADFG-- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHHHH--
Confidence 479999999999999999999631 12111 123555555444443 356788999999974321
Q ss_pred cCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
......++.+|++++|+|+......+..+++.
T Consensus 80 ------------~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~ 111 (194)
T cd01891 80 ------------GEVERVLSMVDGVLLLVDASEGPMPQTRFVLK 111 (194)
T ss_pred ------------HHHHHHHHhcCEEEEEEECCCCccHHHHHHHH
Confidence 12234578999999999998766666655543
No 383
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.3e-08 Score=90.83 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
...|.++|..++|||+|+..|..... ....+......+...++...++++|.||+.+.+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR----------------- 96 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSH----RGTVTSIEPNEATYRLGSENVTLVDLPGHSRLR----------------- 96 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCc----cCeeeeeccceeeEeecCcceEEEeCCCcHHHH-----------------
Confidence 35799999999999999998875521 111233455566667777778999999997521
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhh---hcCeEEEEeeCCCCCCccc---HHHHHHHHhh---cCCCeEEEEeccc
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIE---ESCVIIFLVDGQAGLTAAD---EEIADWLRKN---YMDKFIILAVNKC 313 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~---~~d~vilVvD~~~~~~~~~---~~~~~~l~~~---~~~~p~ilV~NK~ 313 (484)
+.+..++. .+-.+|||+|+..-..... ..++..+... -...|+++++||.
T Consensus 97 ---------------------~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKq 155 (238)
T KOG0090|consen 97 ---------------------RKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQ 155 (238)
T ss_pred ---------------------HHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecch
Confidence 33334444 6888999999654222211 1233333332 1256789999999
Q ss_pred CCCc
Q 011492 314 ESPR 317 (484)
Q Consensus 314 Dl~~ 317 (484)
|+..
T Consensus 156 Dl~t 159 (238)
T KOG0090|consen 156 DLFT 159 (238)
T ss_pred hhhh
Confidence 9754
No 384
>PLN03127 Elongation factor Tu; Provisional
Probab=98.85 E-value=1.1e-08 Score=105.43 Aligned_cols=96 Identities=16% Similarity=0.193 Sum_probs=71.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhc------Ccceeec---------CCCCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 371 IPAIAIVGRPNVGKSSILNALVG------EDRTIVS---------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg------~~~~~~~---------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
..+|+++|+.++|||||+++|.+ +....+. ...|+|++.....+. .++.++.++||||..+.
T Consensus 61 ~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~f-- 137 (447)
T PLN03127 61 HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHADY-- 137 (447)
T ss_pred eEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccch--
Confidence 45899999999999999999973 2211111 125899998766665 46678999999998531
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+..+...+..+|++++|+|+...++.+++..+..
T Consensus 138 ------------~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~ 171 (447)
T PLN03127 138 ------------VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILL 171 (447)
T ss_pred ------------HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH
Confidence 2334455668999999999998888888877654
No 385
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.85 E-value=7.4e-09 Score=91.72 Aligned_cols=83 Identities=24% Similarity=0.230 Sum_probs=53.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|.|.|..... ..|. ...+. +. .+|||||..... ......+.
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-----~~~~---~v~~~---~~--~~iDtpG~~~~~----------~~~~~~~~ 59 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-----RKTQ---AVEFN---DK--GDIDTPGEYFSH----------PRWYHALI 59 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-----ccce---EEEEC---CC--CcccCCccccCC----------HHHHHHHH
Confidence 69999999999999999999864321 1111 11221 22 269999985321 11223344
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 453 RAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
..++.+|++++|+|+.........++
T Consensus 60 ~~~~~ad~il~v~d~~~~~s~~~~~~ 85 (158)
T PRK15467 60 TTLQDVDMLIYVHGANDPESRLPAGL 85 (158)
T ss_pred HHHhcCCEEEEEEeCCCcccccCHHH
Confidence 55789999999999986543333333
No 386
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.84 E-value=1e-08 Score=92.48 Aligned_cols=92 Identities=21% Similarity=0.231 Sum_probs=59.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCccee--------e------cCCCCceecccceeeec----CCCCcEEEEEcCCCccCc
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTI--------V------SPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~--------~------~~~~gtt~~~~~~~~~~----~~g~~i~liDTPG~~~~~ 434 (484)
+|+++|.+|+|||||+|+|++..... . ....|+|.+.......+ ..+..+.+|||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999999743211 0 01224555443333321 134457799999985421
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
......++.+|++++|+|+....+.++...
T Consensus 82 --------------~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~ 111 (179)
T cd01890 82 --------------YEVSRSLAACEGALLLVDATQGVEAQTLAN 111 (179)
T ss_pred --------------HHHHHHHHhcCeEEEEEECCCCccHhhHHH
Confidence 122345788999999999987766655443
No 387
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=3.6e-08 Score=104.08 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=27.8
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
+.......+..++++|+||+|||||++.|+|..
T Consensus 280 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 312 (506)
T PRK13549 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY 312 (506)
T ss_pred ceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 344556677899999999999999999999963
No 388
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.84 E-value=1.4e-08 Score=86.71 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=80.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.-+++++|-.|+|||||++.|......+-.+ |.++......+.+..++.+|..|+.+.+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qhvP----TlHPTSE~l~Ig~m~ftt~DLGGH~qAr----------------- 78 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQHVP----TLHPTSEELSIGGMTFTTFDLGGHLQAR----------------- 78 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccccCC----CcCCChHHheecCceEEEEccccHHHHH-----------------
Confidence 5689999999999999999998765433333 4444455567889999999999996532
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHH-H-hhcCCCeEEEEecccCCCchh
Q 011492 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWL-R-KNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l-~-~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
+....++..+|.+++++|+.+...... ...++.+ . +...+.|+++..||+|.+...
T Consensus 79 ---------------------r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 79 ---------------------RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred ---------------------HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 344567788999999999865322211 1111111 1 223589999999999987654
No 389
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.83 E-value=3.4e-08 Score=104.89 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=27.7
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
+.......+..++|+|+||+|||||++.|.|..
T Consensus 304 ~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 336 (529)
T PRK15134 304 NISFTLRPGETLGLVGESGSGKSTTGLALLRLI 336 (529)
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 344556677899999999999999999999963
No 390
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.83 E-value=1.3e-08 Score=98.37 Aligned_cols=110 Identities=21% Similarity=0.194 Sum_probs=65.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecC--------CCCce-ecccceeeecCCC--CcEEEEEcCCCccCccccCCC
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSP--------ISGTT-RDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSG 440 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~--------~~gtt-~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~ 440 (484)
.+|+++|.+|+|||||+|+|++........ ...|+ .......+. .+| -.+.||||||+.+..-....-
T Consensus 5 f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchhhH
Confidence 379999999999999999999987665432 22232 122222222 234 358999999997642100000
Q ss_pred CchhHHHH-------HHHHHHhh-------cCcEEEEEEeCcc-cccHHhhhhhhhc
Q 011492 441 STTEALSV-------NRAFRAIR-------RSDVVALVIEAMA-CITEQADWRDHRW 482 (484)
Q Consensus 441 ~~~~~~~~-------~~~~~~~~-------~~d~~l~V~~~~~-~~~~~d~~~~~~~ 482 (484)
..+..++. ..-.+..+ .+|+++++++... ++++.|..+++++
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l 140 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRL 140 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 01111100 00011112 4799999999764 7888888888765
No 391
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.83 E-value=1.4e-08 Score=106.82 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=27.2
Q ss_pred hhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 364 LVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 364 ~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
.......+..++++|+||+|||||++.|.|..
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 298 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVETLFGIR 298 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence 34455677899999999999999999999964
No 392
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=3e-08 Score=100.63 Aligned_cols=146 Identities=23% Similarity=0.205 Sum_probs=95.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC---------------------c---c------eeeecCCCceeeeeEEEEEeCCc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGG---------------------N---R------AIVVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~---------------------~---~------~~~~~~~~~t~~~~~~~~~~~~~ 211 (484)
..+.++++|+.++|||||+..|+-. . + .......|.|.......+.-...
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred cceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCce
Confidence 5788999999999999999987521 0 0 00112235555555545554556
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-----
Q 011492 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----- 286 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~----- 286 (484)
.++++|+||+..+-. -++.....+|+.++|+|++.+.
T Consensus 256 ~~tliDaPGhkdFi~--------------------------------------nmi~g~sqaD~avLvvd~s~~~FE~gf 297 (603)
T KOG0458|consen 256 IVTLIDAPGHKDFIP--------------------------------------NMISGASQADVAVLVVDASTGEFESGF 297 (603)
T ss_pred eEEEecCCCccccch--------------------------------------hhhccccccceEEEEEECCcchhhhcc
Confidence 799999999866432 2335567789999999987642
Q ss_pred --CcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh-------HHHH-------hcCCCceeeecccCCCCch
Q 011492 287 --TAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV-------SEFW-------SLGFSPLPISAISGTGTGE 346 (484)
Q Consensus 287 --~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~-------~~~~-------~~~~~~i~vSa~~g~gi~~ 346 (484)
..+..++...++.. .-..+++++||+|++.-...+. ..++ ...+.++|+|+.+|+|+-.
T Consensus 298 d~~gQtrEha~llr~L-gi~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 298 DPGGQTREHALLLRSL-GISQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred CCCCchHHHHHHHHHc-CcceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 22334555555543 3456899999999986332221 1222 2234689999999999754
No 393
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.82 E-value=1.9e-08 Score=106.63 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=27.2
Q ss_pred hhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 364 LVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 364 ~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
.......+..++|+|+||+|||||++.|.|..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~ 334 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL 334 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44455677899999999999999999999963
No 394
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.82 E-value=1.9e-09 Score=92.84 Aligned_cols=156 Identities=17% Similarity=0.114 Sum_probs=102.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecC-CCceeeeeEEEEE--eCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSF--WGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~--~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
..++++++|..++||||++.+.+..- +..++ ...-.+.....+. .....+.+|||+|...+.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgi--fTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfD------------- 83 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGI--FTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFD------------- 83 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccc--cccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHH-------------
Confidence 46899999999999999999998431 11111 1111111111122 223456899999986532
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcc-cHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAA-DEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~-~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
-...++++.+...++|+..++..+.. ..++.+.+.......|.++|-||+|+++
T Consensus 84 -------------------------aItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlve 138 (246)
T KOG4252|consen 84 -------------------------AITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVE 138 (246)
T ss_pred -------------------------HHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhH
Confidence 33457788899999999866543332 2345555555556899999999999987
Q ss_pred hhhhhhHH----HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 318 KGIMQVSE----FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~~~~----~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+.....-. ....+...+.+|++...++...+.++.+.+.+
T Consensus 139 ds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK~~q 182 (246)
T KOG4252|consen 139 DSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEKLTQ 182 (246)
T ss_pred hhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 65433211 22334466789999999999999988876543
No 395
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.82 E-value=1.5e-08 Score=89.60 Aligned_cols=89 Identities=21% Similarity=0.283 Sum_probs=59.4
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
+|+++|.+|+|||||+|++++.... ....++++++.....+.. ++ .++.+|||||.... . ..
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~-----------~---~~ 65 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERF-----------R---SL 65 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHH-----------H---HH
Confidence 6899999999999999999987543 344555555543333332 23 35789999995221 1 11
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhh
Q 011492 451 AFRAIRRSDVVALVIEAMAC--ITEQADW 477 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~ 477 (484)
....++.+|++++|+|+..+ |..-+.+
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 94 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSFDNTDKW 94 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHH
Confidence 22346899999999998764 4444433
No 396
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.82 E-value=3.1e-09 Score=100.60 Aligned_cols=89 Identities=26% Similarity=0.419 Sum_probs=71.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
-+++++|.|++|||||+|.|.+.+ .+++..+-||..++..-+. ++|-+|-++|+||+...... ..-..+.+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~-seva~y~FTTl~~VPG~l~-Y~ga~IQild~Pgii~gas~-------g~grG~~v 134 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTK-SEVADYPFTTLEPVPGMLE-YKGAQIQLLDLPGIIEGASS-------GRGRGRQV 134 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCC-ccccccCceecccccceEe-ecCceEEEEcCcccccCccc-------CCCCccee
Confidence 389999999999999999999964 4577888899988887766 58999999999999875321 12223445
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011492 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+..+|.||++++|+|+..
T Consensus 135 lsv~R~ADlIiiVld~~~ 152 (365)
T COG1163 135 LSVARNADLIIIVLDVFE 152 (365)
T ss_pred eeeeccCCEEEEEEecCC
Confidence 667899999999999753
No 397
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.81 E-value=1.8e-08 Score=106.19 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=27.4
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
........+..++++|+||+|||||++.|.|..
T Consensus 270 ~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~ 302 (501)
T PRK10762 270 DVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL 302 (501)
T ss_pred cceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence 344455667799999999999999999999963
No 398
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.81 E-value=4.7e-09 Score=103.78 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcC-----cceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~-----~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~ 445 (484)
..+|+++|.+|+|||||||+|.|- ..+.|+.+ .||.... .+..+.-..+++||.||+..+ .
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~--~Y~~p~~pnv~lWDlPG~gt~-----------~ 100 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPT--PYPHPKFPNVTLWDLPGIGTP-----------N 100 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-E--EEE-SS-TTEEEEEE--GGGS-----------S
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCe--eCCCCCCCCCeEEeCCCCCCC-----------C
Confidence 458999999999999999999882 22333332 3444433 444456678999999998533 2
Q ss_pred HHHHHHHH--HhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 446 LSVNRAFR--AIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 446 ~~~~~~~~--~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
+....++. .+...|+||+|.+ .+|++.|-++++.+
T Consensus 101 f~~~~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i 137 (376)
T PF05049_consen 101 FPPEEYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEI 137 (376)
T ss_dssp --HHHHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHH
T ss_pred CCHHHHHHHccccccCEEEEEeC--CCCchhhHHHHHHH
Confidence 22333443 3567788887755 69999999998664
No 399
>PRK12735 elongation factor Tu; Reviewed
Probab=98.80 E-value=1.6e-08 Score=103.16 Aligned_cols=96 Identities=16% Similarity=0.197 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcC------cceee---------cCCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~------~~~~~---------~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
+..+|+++|+.++|||||+|+|++. ..+.. ....|+|.+.....+. .++.++.++||||..+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~~-- 87 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHAD-- 87 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHHH--
Confidence 3468999999999999999999962 11110 1134888887665554 4677899999999732
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.+..+...+..+|++++|+|+...+..+++..+.
T Consensus 88 ------------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~ 121 (396)
T PRK12735 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121 (396)
T ss_pred ------------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH
Confidence 2345567778999999999998888887765553
No 400
>PRK09866 hypothetical protein; Provisional
Probab=98.80 E-value=2.4e-08 Score=103.49 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011492 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 420 ~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.+++++||||+..+.. ......+ ...++.+|++|||+|+...+++.|+.+++.+
T Consensus 230 ~QIIFVDTPGIhk~~~-----~~L~k~M----~eqL~eADvVLFVVDat~~~s~~DeeIlk~L 283 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ-----PHLQKML----NQQLARASAVLAVLDYTQLKSISDEEVREAI 283 (741)
T ss_pred CCEEEEECCCCCCccc-----hHHHHHH----HHHHhhCCEEEEEEeCCCCCChhHHHHHHHH
Confidence 6789999999975421 1122232 2469999999999999888999999888654
No 401
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.79 E-value=1.2e-08 Score=93.06 Aligned_cols=96 Identities=30% Similarity=0.433 Sum_probs=70.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceee-----------------cCCCCceecccceeee-cCCCCcEEEEEcCCCccC
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-----------------SPISGTTRDAIDTEFT-GPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~-----------------~~~~gtt~~~~~~~~~-~~~g~~i~liDTPG~~~~ 433 (484)
.+|+++|+.++|||||+++|++...... ....|.|.+.-...+. ...+..+.++||||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 5899999999999999999997542210 0112555554444443 24678999999999632
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
-...+...++.+|++++|||+...+..+....++.
T Consensus 83 -------------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~ 117 (188)
T PF00009_consen 83 -------------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKI 117 (188)
T ss_dssp -------------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHH
T ss_pred -------------eeecccceecccccceeeeeccccccccccccccc
Confidence 13445667899999999999999999988877754
No 402
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=1.4e-08 Score=107.01 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=27.0
Q ss_pred hhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 364 LVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 364 ~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
.......+..++++|+||+|||||++.|+|..
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~ 303 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT 303 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence 33445667799999999999999999999964
No 403
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.79 E-value=8.4e-08 Score=101.34 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=27.5
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
........+..++|+|+||+|||||++.|.|..
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~ 313 (510)
T PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLR 313 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 344455667899999999999999999999963
No 404
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.77 E-value=9.3e-08 Score=92.37 Aligned_cols=139 Identities=14% Similarity=0.134 Sum_probs=71.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeec-C--------CCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-E--------PGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~-~--------~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~ 231 (484)
.++|+++|.+|+|||||+|.|++........ . .............-++ ..++++||||+.........+
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 3689999999999999999999875332210 0 1111222122222223 257999999997643322111
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhh-chHHHHHH-----HHHHhhhcCeEEEEeeCC-CCCCcccHHHHHHHHhhcCCC
Q 011492 232 MEDLAITTTIGMEGIPLATREAAVAR-MPSMIERQ-----ATAAIEESCVIIFLVDGQ-AGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~-~~~~~~~~-----~~~~~~~~d~vilVvD~~-~~~~~~~~~~~~~l~~~~~~~ 304 (484)
. .+...+++ +...+... ....=...|+++|+++++ +++...|.+..+.|.. ..
T Consensus 84 ~-----------------~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~---~v 143 (281)
T PF00735_consen 84 E-----------------PIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK---RV 143 (281)
T ss_dssp H-----------------HHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT---TS
T ss_pred H-----------------HHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc---cc
Confidence 0 11111111 11111100 000112378999999864 3455566655555544 68
Q ss_pred eEEEEecccCCCchhhh
Q 011492 305 FIILAVNKCESPRKGIM 321 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~~~ 321 (484)
++|-|+.|+|.......
T Consensus 144 NvIPvIaKaD~lt~~el 160 (281)
T PF00735_consen 144 NVIPVIAKADTLTPEEL 160 (281)
T ss_dssp EEEEEESTGGGS-HHHH
T ss_pred cEEeEEecccccCHHHH
Confidence 89999999998875443
No 405
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.77 E-value=7.4e-08 Score=101.66 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
+.......+..++++|+||+|||||++.|+|..
T Consensus 278 ~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 344455677899999999999999999999964
No 406
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.76 E-value=1.5e-08 Score=90.73 Aligned_cols=57 Identities=35% Similarity=0.465 Sum_probs=48.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
...+|+++|.+|+|||||+|+|++.....+++.||+|+....... +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 357999999999999999999999888889999999997665432 356999999995
No 407
>PRK00049 elongation factor Tu; Reviewed
Probab=98.76 E-value=2.2e-08 Score=101.97 Aligned_cols=97 Identities=16% Similarity=0.181 Sum_probs=72.6
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcc------eee---------cCCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDR------TIV---------SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~------~~~---------~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
...+|+++|+.++|||||+++|++... ... ....|+|++.....+. .++.++.++||||..+
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~-- 87 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHAD-- 87 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHHH--
Confidence 345899999999999999999997310 001 1145899988766654 4677899999999742
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+..+...+..+|++++|+|+...++.+++..+..
T Consensus 88 ------------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~ 122 (396)
T PRK00049 88 ------------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122 (396)
T ss_pred ------------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHH
Confidence 23445566789999999999998898888776643
No 408
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.75 E-value=3.4e-08 Score=88.72 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|.+.......+..|.... .+. .++..+.+|||||.... .. .
T Consensus 14 ~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~----~~~-~~~~~l~l~D~~G~~~~----------~~----~ 74 (173)
T cd04154 14 EMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIK----TLE-YEGYKLNIWDVGGQKTL----------RP----Y 74 (173)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE----EEE-ECCEEEEEEECCCCHHH----------HH----H
Confidence 45899999999999999999998754333333332221 222 24567899999997421 11 1
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011492 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~ 94 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDR 94 (173)
T ss_pred HHHHhCCCCEEEEEEECCCH
Confidence 22357899999999998875
No 409
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.75 E-value=2.9e-08 Score=91.33 Aligned_cols=90 Identities=20% Similarity=0.379 Sum_probs=57.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
+|+++|.+|||||||+|.+++..... ...|.++.+.....+. .+|. .+.+|||||...... ....+....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~-~~~~~~~l~i~Dt~G~~~~~~------~~~~e~~~~ 73 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVV-LSGRVYDLHILDVPNMQRYPG------TAGQEWMDP 73 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEE-ECCEEEEEEEEeCCCcccCCc------cchhHHHHH
Confidence 68999999999999999999865322 2334443332211222 3453 467999999864321 111122223
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011492 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 74 ~~~~~~~ad~iilv~D~~~~ 93 (198)
T cd04142 74 RFRGLRNSRAFILVYDICSP 93 (198)
T ss_pred HHhhhccCCEEEEEEECCCH
Confidence 44567899999999999765
No 410
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.74 E-value=2.3e-08 Score=86.61 Aligned_cols=82 Identities=24% Similarity=0.255 Sum_probs=53.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|.+.+.... ... |. ...+ .+ .+|||||.... .........
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~---~~~~---~~---~~iDt~G~~~~----------~~~~~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ---AVEY---ND---GAIDTPGEYVE----------NRRLYSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce---eEEE---cC---eeecCchhhhh----------hHHHHHHHH
Confidence 6899999999999999999987531 111 11 1111 12 68999997310 111123333
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 453 RAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
..++.+|++++|+|+..+.+.++..+
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~ 83 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGF 83 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhH
Confidence 45899999999999987766554433
No 411
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.74 E-value=2e-07 Score=91.48 Aligned_cols=81 Identities=20% Similarity=0.130 Sum_probs=49.9
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh--------HHHH-h----cCCCceee
Q 011492 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV--------SEFW-S----LGFSPLPI 336 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~--------~~~~-~----~~~~~i~v 336 (484)
+..+|.++++.+.. ...+... +. ..+.++|.++|+||+|+........ .... . ...+++++
T Consensus 145 ~~~aD~i~vv~~~~---~~~el~~--~~-~~l~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~i 218 (300)
T TIGR00750 145 ANMADTFVVVTIPG---TGDDLQG--IK-AGLMEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTT 218 (300)
T ss_pred HHhhceEEEEecCC---ccHHHHH--HH-HHHhhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence 45678888776422 2222221 11 2224788899999999976432110 0110 1 12358999
Q ss_pred ecccCCCCchhhHHHHHHhh
Q 011492 337 SAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 337 Sa~~g~gi~~L~~~i~~~l~ 356 (484)
||+++.|++++++++.+...
T Consensus 219 SA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 219 SAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EccCCCCHHHHHHHHHHHHH
Confidence 99999999999999987644
No 412
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.74 E-value=2.2e-08 Score=92.86 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCeEEEEecccCCCchh---hhhhH---HHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011492 303 DKFIILAVNKCESPRKG---IMQVS---EFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~---~~~~~---~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
+++.++++||+|+.... ..... .......+++++||++|.|++++++++.++
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 56789999999997531 11111 112234689999999999999999998764
No 413
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.74 E-value=4.5e-08 Score=94.18 Aligned_cols=94 Identities=21% Similarity=0.304 Sum_probs=62.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee--ecCC-----CC-ceec-------------ccceeeecCCCCcEEEEEcCCC
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTI--VSPI-----SG-TTRD-------------AIDTEFTGPEGQKFRLIDTAGI 430 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~-----~g-tt~~-------------~~~~~~~~~~g~~i~liDTPG~ 430 (484)
.+|+++|+.|+|||||+|+|+...... .+.+ .| ++++ .....+ .+.+.++.+|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~-~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQF-EYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEE-eeCCEEEEEEECCCc
Confidence 479999999999999999998642221 1111 01 1111 111122 246788999999997
Q ss_pred ccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.++ ...+...++.+|++++|+|+..++..+.+.+++
T Consensus 82 ~df--------------~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~ 117 (267)
T cd04169 82 EDF--------------SEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFE 117 (267)
T ss_pred hHH--------------HHHHHHHHHHCCEEEEEEECCCCccHHHHHHHH
Confidence 432 122455678999999999998887776665543
No 414
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.74 E-value=4.9e-08 Score=88.79 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.+.+.....+.+..+.+. ..+. .++.++.++||||.... ...
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~----~~~~-~~~~~~~~~D~~G~~~~-----------~~~--- 77 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS----EELA-IGNIKFTTFDLGGHQQA-----------RRL--- 77 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce----EEEE-ECCEEEEEEECCCCHHH-----------HHH---
Confidence 4689999999999999999999875433322222222 2222 24667899999997421 111
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011492 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~ 97 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDK 97 (184)
T ss_pred HHHHhCCCCEEEEEEECCcH
Confidence 12456899999999998764
No 415
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=1e-07 Score=93.47 Aligned_cols=27 Identities=26% Similarity=0.414 Sum_probs=23.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRA 189 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~ 189 (484)
..|.+++|++|.|||||+..|..+..+
T Consensus 290 GRRYGLVGPNG~GKTTLLkHIa~Rala 316 (807)
T KOG0066|consen 290 GRRYGLVGPNGMGKTTLLKHIAARALA 316 (807)
T ss_pred cceecccCCCCCchHHHHHHHHhhhcc
Confidence 478999999999999999999876543
No 416
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.73 E-value=1.2e-07 Score=100.34 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.7
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
+.......+..++++|+||+|||||++.|.|..
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 313 (510)
T PRK09700 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVD 313 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344555677899999999999999999999964
No 417
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.73 E-value=2e-08 Score=88.86 Aligned_cols=56 Identities=34% Similarity=0.443 Sum_probs=47.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
..+|+++|.+|+|||||+|+|.+.....++..+++|+..... .. +..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~--~~-~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYI--TL-MKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEE--Ec-CCCEEEEECcCC
Confidence 468999999999999999999998888899999998876542 22 345899999995
No 418
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.73 E-value=1.6e-08 Score=95.37 Aligned_cols=91 Identities=24% Similarity=0.240 Sum_probs=73.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..+++||-||+|||||+|+|...+- +++..+-||.........+.+..++.|.|.|||.+-. +..+-+--..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GA-------h~nkGlG~~F 268 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGA-------HMNKGLGYKF 268 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccc-------cccCcccHHH
Confidence 3689999999999999999998764 7888888888887777766666779999999998753 2333344456
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
++.+..|+.++||||++..
T Consensus 269 LrHiER~~~l~fVvD~s~~ 287 (366)
T KOG1489|consen 269 LRHIERCKGLLFVVDLSGK 287 (366)
T ss_pred HHHHHhhceEEEEEECCCc
Confidence 6788999999999999865
No 419
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.73 E-value=3.1e-08 Score=93.62 Aligned_cols=93 Identities=25% Similarity=0.286 Sum_probs=62.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCccee--ecCC---------------CCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTI--VSPI---------------SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~---------------~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
+|+++|+.|+|||||+++|+...... .+.+ .|.|.......+. +.+.++.+|||||..+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccch--
Confidence 47999999999999999998743221 1111 1223322222332 46778999999998542
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
...+...++.+|++++|+|+..++..+.+.+.+
T Consensus 78 ------------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~ 110 (237)
T cd04168 78 ------------IAEVERSLSVLDGAILVISAVEGVQAQTRILWR 110 (237)
T ss_pred ------------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH
Confidence 122445678999999999999888776666554
No 420
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.73 E-value=3.2e-08 Score=88.12 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcce---eecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRT---IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~---~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+|+++|.+|+|||||+|.|.+.... .......+|+..-...+. +++..+.++||||..... .
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~--------------~ 65 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQESLR--------------S 65 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChhhH--------------H
Confidence 4799999999999999999875321 011111233332222333 356789999999974321 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011492 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.+.
T Consensus 66 ~~~~~~~~~~~~v~vvd~~~~ 86 (167)
T cd04160 66 LWDKYYAECHAIIYVIDSTDR 86 (167)
T ss_pred HHHHHhCCCCEEEEEEECchH
Confidence 122457899999999998653
No 421
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.72 E-value=4.1e-08 Score=86.76 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|.+.+.......+..|.+.. .+.......+.++||||.... . ....
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~l~i~D~~G~~~~----------~----~~~~ 62 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVE----MLQLEKHLSLTVWDVGGQEKM----------R----TVWK 62 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceE----EEEeCCceEEEEEECCCCHhH----------H----HHHH
Confidence 479999999999999999999876544443343322 122223457899999997421 0 1112
Q ss_pred HHhhcCcEEEEEEeCccc
Q 011492 453 RAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~ 470 (484)
..++.+|++++|+|+.+.
T Consensus 63 ~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 63 CYLENTDGLVYVVDSSDE 80 (160)
T ss_pred HHhccCCEEEEEEECCcH
Confidence 346789999999998765
No 422
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.72 E-value=2e-07 Score=78.52 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-C--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..+|+++|.-++|||+++..|+-.+.........+..+.+...+.-+ | ..+.+.||.|+.....
T Consensus 9 ~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~------------- 75 (198)
T KOG3883|consen 9 VCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQ------------- 75 (198)
T ss_pred ceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchh-------------
Confidence 67999999999999999988765443333333333333333333221 1 2488999999865311
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHH-HHHhh--cCCCeEEEEecccCCC
Q 011492 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIAD-WLRKN--YMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~-~l~~~--~~~~p~ilV~NK~Dl~ 316 (484)
..-..++..+|..++|++..++.+....++++ ++.+. -...|++++.||+|+.
T Consensus 76 ------------------------eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~ 131 (198)
T KOG3883|consen 76 ------------------------ELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA 131 (198)
T ss_pred ------------------------hhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc
Confidence 12235677899999999976655544444332 33321 1346899999999996
Q ss_pred chhhhh--hHH-HH-hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011492 317 RKGIMQ--VSE-FW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~--~~~-~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.+.... ... |. ...+..+.+++.....+-+-+..+...+..
T Consensus 132 ~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 132 EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHHHHHHHhccC
Confidence 543221 111 21 234567899999988888888888776543
No 423
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.72 E-value=7.5e-08 Score=88.43 Aligned_cols=77 Identities=13% Similarity=0.069 Sum_probs=49.9
Q ss_pred cCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCch---hh---hhhHHHHhcCCCceeeecccCCCCch
Q 011492 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRK---GI---MQVSEFWSLGFSPLPISAISGTGTGE 346 (484)
Q Consensus 273 ~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~---~~---~~~~~~~~~~~~~i~vSa~~g~gi~~ 346 (484)
++.++.|+|+........ ....+ ....-++++||+|+.+. .. .........+.+++++||++|+|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~----~~~~q--i~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~e 186 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR----KGGPG--ITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDT 186 (199)
T ss_pred hCcEEEEEEcchhhhhhh----hhHhH--hhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHH
Confidence 577999999865433211 11111 12234899999999752 11 11222234566899999999999999
Q ss_pred hhHHHHHHh
Q 011492 347 LLDLVCSEL 355 (484)
Q Consensus 347 L~~~i~~~l 355 (484)
+++++.+++
T Consensus 187 l~~~i~~~~ 195 (199)
T TIGR00101 187 VIDWIEHYA 195 (199)
T ss_pred HHHHHHhhc
Confidence 999998754
No 424
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.71 E-value=3.3e-08 Score=100.26 Aligned_cols=148 Identities=18% Similarity=0.132 Sum_probs=90.5
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCccee--eecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
....||+++|..|||||||+-+|+..++.. ....+..+.. ..++-...+..++||+.-.+.
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---advtPe~vpt~ivD~ss~~~~-------------- 69 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---ADVTPENVPTSIVDTSSDSDD-------------- 69 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---CccCcCcCceEEEecccccch--------------
Confidence 346899999999999999999999875421 1111222222 112223445789999743221
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc--ccHHHHHHHHhhc---CCCeEEEEeccc
Q 011492 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA--ADEEIADWLRKNY---MDKFIILAVNKC 313 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~--~~~~~~~~l~~~~---~~~p~ilV~NK~ 313 (484)
...+...++.+|++++|+...++.+. ....++-++++.. .+.|+|+|.||+
T Consensus 70 ------------------------~~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~ 125 (625)
T KOG1707|consen 70 ------------------------RLCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKS 125 (625)
T ss_pred ------------------------hHHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeecc
Confidence 02345678899999999987664333 2334556666655 689999999999
Q ss_pred CCCchhhhh--h-HHHHhcCC----CceeeecccCCCCchhhH
Q 011492 314 ESPRKGIMQ--V-SEFWSLGF----SPLPISAISGTGTGELLD 349 (484)
Q Consensus 314 Dl~~~~~~~--~-~~~~~~~~----~~i~vSa~~g~gi~~L~~ 349 (484)
|+....... . .......+ .++.+||++-.++.+++-
T Consensus 126 d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~~e~fY 168 (625)
T KOG1707|consen 126 DNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANVSELFY 168 (625)
T ss_pred CCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhhHhhhh
Confidence 987643331 1 00011111 356777777766665543
No 425
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.71 E-value=5.3e-08 Score=87.31 Aligned_cols=80 Identities=28% Similarity=0.414 Sum_probs=56.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|++|+|||||+|.|.+.......+..|.+... +. ..+..+.++||||.... . ..
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~----i~-~~~~~~~~~D~~G~~~~----------~----~~ 74 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKT----VQ-SDGFKLNVWDIGGQRAI----------R----PY 74 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEE----EE-ECCEEEEEEECCCCHHH----------H----HH
Confidence 468999999999999999999997544444444544322 22 24678899999996421 0 11
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011492 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
....++.+|++++|+|+..
T Consensus 75 ~~~~~~~~~~ii~v~D~~~ 93 (173)
T cd04155 75 WRNYFENTDCLIYVIDSAD 93 (173)
T ss_pred HHHHhcCCCEEEEEEeCCC
Confidence 2234678999999999875
No 426
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=7.7e-08 Score=104.08 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=39.7
Q ss_pred HHHHHHhhchHH-HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC--CCeEEEEeccc
Q 011492 250 TREAAVARMPSM-IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM--DKFIILAVNKC 313 (484)
Q Consensus 250 ~~~~~v~~~~~~-~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~--~~p~ilV~NK~ 313 (484)
.....+..++.. ..+..++.+...+.-++++| +|.+++|.....++...+. +..+++|-+..
T Consensus 142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLD--EPtn~LD~~~~~~L~~~L~~~~~tviivsHd~ 206 (638)
T PRK10636 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLD--EPTNHLDLDAVIWLEKWLKSYQGTLILISHDR 206 (638)
T ss_pred hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEc--CCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 344555666433 34566666666777888898 8999999887776665432 34556654443
No 427
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.71 E-value=4.8e-08 Score=85.57 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|++.+...... .+..+.+......... .....+.++||||.... ....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~--------------~~~~ 66 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-GKTVKLQIWDTAGQERF--------------RSIT 66 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-CEEEEEEEEecCChHHH--------------HHHH
Confidence 689999999999999999998764433 2233333333222221 12356789999997321 1123
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011492 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
...++.+|++++|+|+..
T Consensus 67 ~~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 67 PSYYRGAHGAILVYDITN 84 (159)
T ss_pred HHHhcCCCEEEEEEECCC
Confidence 455788999999999875
No 428
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.70 E-value=5.9e-08 Score=90.54 Aligned_cols=95 Identities=19% Similarity=0.243 Sum_probs=65.0
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCC---------------CceecccceeeecC---------CCCcEEEEEcC
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------------GTTRDAIDTEFTGP---------EGQKFRLIDTA 428 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~---------------gtt~~~~~~~~~~~---------~g~~i~liDTP 428 (484)
+|+++|+.++|||||+++|+........... |.|.+.....+.+. .+..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999865322111111 33333322222211 14568899999
Q ss_pred CCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 429 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
|..+. ...+...++.+|++++|+|+..+++.+.+.++++
T Consensus 82 G~~~f--------------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~ 120 (222)
T cd01885 82 GHVDF--------------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ 120 (222)
T ss_pred Ccccc--------------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH
Confidence 98643 1235567899999999999999998888777643
No 429
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.70 E-value=2.3e-08 Score=87.41 Aligned_cols=58 Identities=48% Similarity=0.712 Sum_probs=46.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIR 431 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~ 431 (484)
.+|+++|.+|+|||||+|.|++.. +.....++++.+.....+.. ++ ..+.+|||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcc
Confidence 379999999999999999999987 66677778888776544443 44 567889999953
No 430
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.70 E-value=5.7e-08 Score=102.25 Aligned_cols=32 Identities=31% Similarity=0.424 Sum_probs=26.9
Q ss_pred hhhhhccCCCEEEEEcCCCCCchhHHHhhhcC
Q 011492 363 DLVEEENRIPAIAIVGRPNVGKSSILNALVGE 394 (484)
Q Consensus 363 ~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~ 394 (484)
+.......+..++|+|+||+|||||++.|.|.
T Consensus 278 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~ 309 (490)
T PRK10938 278 NLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD 309 (490)
T ss_pred eceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 34445567789999999999999999999995
No 431
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.70 E-value=7.7e-08 Score=88.96 Aligned_cols=84 Identities=14% Similarity=0.237 Sum_probs=52.5
Q ss_pred cCeEEEEeeCCCCCCccc---HHHH--HHHHhhcCCCeEEEEecccCCCchhhhhhH-----------H-----------
Q 011492 273 SCVIIFLVDGQAGLTAAD---EEIA--DWLRKNYMDKFIILAVNKCESPRKGIMQVS-----------E----------- 325 (484)
Q Consensus 273 ~d~vilVvD~~~~~~~~~---~~~~--~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~-----------~----------- 325 (484)
.-++++|+|......... ..++ ..|-+ .+.|+++|+||+|+.+......| .
T Consensus 148 ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~ 225 (366)
T KOG1532|consen 148 PTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLT 225 (366)
T ss_pred CeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhh
Confidence 567889999643322222 1111 12223 37899999999998764321110 0
Q ss_pred --------HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011492 326 --------FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 326 --------~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
....++..+.+|+.+|.|.++++..+.+.+.+.
T Consensus 226 ~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 226 RSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred hhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 011244668899999999999999887766543
No 432
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.70 E-value=9.6e-08 Score=89.51 Aligned_cols=139 Identities=23% Similarity=0.232 Sum_probs=97.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce-------eeEeeccccccccCCCchhhhhh
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE-------FMLVDTGGVLNVSKSQPNIMEDL 235 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-------i~liDtpG~~~~~~~~~~~~~~~ 235 (484)
.-.++++|++|+|||||++.|.|--.. .. +.+.+++.. ..+.-..|+.......+.+..++
T Consensus 30 Ge~~~i~G~nGsGKSTL~~~l~GLl~p----~~--------G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 30 GERVLLIGPNGSGKSTLLKLLNGLLKP----TS--------GEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCcCcC----CC--------CEEEECCeeccchhhHHHhhcceEEEEECcccccccCcH
Confidence 458999999999999999999986321 11 122223322 12334456554445556889999
Q ss_pred hhhhhcccC--CCchhHHHHHHhhchHHHH------------------HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHH
Q 011492 236 AITTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEEIAD 295 (484)
Q Consensus 236 ~~~~~~~~~--G~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~ 295 (484)
..+++|+++ |++.+++..++.+....+. +.+++.+.....-++++| +|.+.+|.....
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLD--EPta~LD~~~~~ 175 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLD--EPTAGLDPKGRR 175 (235)
T ss_pred HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEc--CCCCCCCHHHHH
Confidence 999999999 8999889999988876553 778888888899999999 788888876444
Q ss_pred HHH----hhc--CCCeEEEEecccCC
Q 011492 296 WLR----KNY--MDKFIILAVNKCES 315 (484)
Q Consensus 296 ~l~----~~~--~~~p~ilV~NK~Dl 315 (484)
.+. +.. .++.+|++-+.+|.
T Consensus 176 ~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 176 ELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 333 321 13567777666653
No 433
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1e-07 Score=93.61 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=86.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHh--CCc-------ce------eee------cCCCceeeeeEEEEEeCCceeeEeecccc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLV--GGN-------RA------IVV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~--~~~-------~~------~~~------~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
....+|+-+|.+|||||-..|+ |.- .+ ..+ ...|.......-++.+.+..++++||||+
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 3467899999999999998865 220 00 011 11233333344456778889999999999
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011492 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
.++.. -+.+.+..+|..|+|+|+..+...+...+.+.++..
T Consensus 92 eDFSE--------------------------------------DTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR- 132 (528)
T COG4108 92 EDFSE--------------------------------------DTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR- 132 (528)
T ss_pred cccch--------------------------------------hHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhc-
Confidence 87653 233666778999999999999999888888888775
Q ss_pred CCCeEEEEecccCCCchhh
Q 011492 302 MDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~~~~~ 320 (484)
+.|++-.+||.|......
T Consensus 133 -~iPI~TFiNKlDR~~rdP 150 (528)
T COG4108 133 -DIPIFTFINKLDREGRDP 150 (528)
T ss_pred -CCceEEEeeccccccCCh
Confidence 999999999999765443
No 434
>PRK00007 elongation factor G; Reviewed
Probab=98.69 E-value=5.1e-08 Score=106.29 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=73.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhc---Ccce--eec------------CCCCceecccceeeecCCCCcEEEEEcCCCccC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVG---EDRT--IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg---~~~~--~~~------------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
..+|+++|+.|+|||||+|+|+. .... .+. ...|+|++.....+. +.+.++.++||||..+
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~~~- 87 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGHVD- 87 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCcHH-
Confidence 45899999999999999999973 2111 011 234788887766665 5688999999999743
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
++ ..+...++.+|++++|+|+...++.+++.++.+
T Consensus 88 ------------f~-~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~ 122 (693)
T PRK00007 88 ------------FT-IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ 122 (693)
T ss_pred ------------HH-HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH
Confidence 11 236677889999999999999999999988754
No 435
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.69 E-value=5.6e-08 Score=93.93 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCccee--ecCC-CCc--------------eecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTI--VSPI-SGT--------------TRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~-~gt--------------t~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
+|+++|++|+|||||+|+|++..... .+.+ .|+ |.......+. +++.++.+|||||..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f-- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADF-- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHH--
Confidence 47999999999999999998643211 1111 122 2222222222 46778999999997431
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
...+...++.+|++++|+|+......+...+++
T Consensus 78 ------------~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~ 110 (268)
T cd04170 78 ------------VGETRAALRAADAALVVVSAQSGVEVGTEKLWE 110 (268)
T ss_pred ------------HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH
Confidence 123455678999999999998877776665543
No 436
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.69 E-value=5e-08 Score=103.94 Aligned_cols=84 Identities=29% Similarity=0.461 Sum_probs=63.2
Q ss_pred cCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhc
Q 011492 378 GRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR 457 (484)
Q Consensus 378 G~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (484)
|.+|+|||||+|.|.|.. +.++..+|+|++.....+.. ++.++.++||||..+... ....+.+.+.+...+.
T Consensus 1 G~pNvGKSSL~N~Ltg~~-~~v~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~------~s~~e~v~~~~l~~~~ 72 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN-QTVGNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTT------FSLEEEVARDYLLNEK 72 (591)
T ss_pred CCCCCCHHHHHHHHhCCC-CeecCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCc------cchHHHHHHHHHhhcC
Confidence 899999999999999985 57889999999877666653 677899999999876432 1122223333344568
Q ss_pred CcEEEEEEeCcc
Q 011492 458 SDVVALVIEAMA 469 (484)
Q Consensus 458 ~d~~l~V~~~~~ 469 (484)
+|++++|+|+.+
T Consensus 73 aDvvI~VvDat~ 84 (591)
T TIGR00437 73 PDLVVNVVDASN 84 (591)
T ss_pred CCEEEEEecCCc
Confidence 999999999864
No 437
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.68 E-value=6.5e-08 Score=87.85 Aligned_cols=85 Identities=20% Similarity=0.308 Sum_probs=54.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||++.+.+.......+..|.+............+..+.+|||||.... .. . .
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~----------~~-~---~ 69 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL----------RP-L---W 69 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH----------HH-H---H
Confidence 47999999999999999999886543322222333322222211123457899999996321 01 1 1
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.+.
T Consensus 70 ~~~~~~~d~ii~v~D~~~~ 88 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDV 88 (183)
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 1247899999999998764
No 438
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.68 E-value=5.2e-08 Score=106.27 Aligned_cols=96 Identities=21% Similarity=0.222 Sum_probs=72.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-----ecC------------CCCceecccceeeecCCCCcEEEEEcCCCccC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----VSP------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-----~~~------------~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
..+|+++|+.|+|||||+|+|+...... +.+ ..|+|++.....+. +++.++.+|||||..+.
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGHVDF 88 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCCcch
Confidence 3589999999999999999998532211 111 24788877666665 47889999999998642
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
. ..+...++.+|++++|+|+......+++.++++
T Consensus 89 ~--------------~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~ 122 (689)
T TIGR00484 89 T--------------VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ 122 (689)
T ss_pred h--------------HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH
Confidence 1 124466788999999999999898888877654
No 439
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.68 E-value=3.7e-08 Score=106.44 Aligned_cols=91 Identities=20% Similarity=0.316 Sum_probs=63.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec----------CCCCcee----------------------cccceeeecCC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS----------PISGTTR----------------------DAIDTEFTGPE 418 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~----------~~~gtt~----------------------~~~~~~~~~~~ 418 (484)
..+|+++|++|+|||||+|+|+......+. ...|+|| +.....+. ++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~-~~ 102 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA-TP 102 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc-cC
Confidence 357999999999999999999976543331 1344444 33333333 46
Q ss_pred CCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhh
Q 011492 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQAD 476 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~ 476 (484)
+.++.++||||..+ + ...+...+..+|++++|+|+...++.+++
T Consensus 103 ~~~~~liDtPG~~~-------------f-~~~~~~~~~~aD~~llVvda~~g~~~~t~ 146 (632)
T PRK05506 103 KRKFIVADTPGHEQ-------------Y-TRNMVTGASTADLAIILVDARKGVLTQTR 146 (632)
T ss_pred CceEEEEECCChHH-------------H-HHHHHHHHHhCCEEEEEEECCCCccccCH
Confidence 67899999999632 1 23344567899999999999888766544
No 440
>PRK12736 elongation factor Tu; Reviewed
Probab=98.68 E-value=5.4e-08 Score=99.15 Aligned_cols=96 Identities=18% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCc------ceeec---------CCCCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGED------RTIVS---------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~------~~~~~---------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
..+|+++|+.++|||||+++|++.. .+... ...|+|++.....+. .++.++.++||||..+
T Consensus 12 ~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~~--- 87 (394)
T PRK12736 12 HVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHAD--- 87 (394)
T ss_pred eeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHHH---
Confidence 4589999999999999999998731 11111 145888888665554 3567899999999632
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+..+...+..+|++++|+|+...+..+++..+..
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~ 122 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHH
Confidence 13445667789999999999998888887766643
No 441
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=9.1e-08 Score=83.64 Aligned_cols=159 Identities=17% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..+++++|..|.||||+.++.+...... ...+.|.........-..+...+.+|||.|.+........
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg----------- 78 (216)
T KOG0096|consen 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG----------- 78 (216)
T ss_pred eEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccc-----------
Confidence 6789999999999999999966543221 1112222222222111112256899999999876554432
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchh-
Q 011492 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG- 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~- 319 (484)
+.-...+.++++|....++.... .+.+-+.+...+.|++++.||.|.....
T Consensus 79 ---------------------------yyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~ 131 (216)
T KOG0096|consen 79 ---------------------------YYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKV 131 (216)
T ss_pred ---------------------------cEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceecccccc
Confidence 22445677888887766555432 2333344444578999999999976644
Q ss_pred hhhhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011492 320 IMQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 320 ~~~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
......+ ...++.++.+||+++.+...=+-++...+....
T Consensus 132 k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 132 KAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKLTGDP 172 (216)
T ss_pred ccccceeeecccceeEEeecccccccccchHHHhhhhcCCC
Confidence 1122222 234567899999999999988888887665433
No 442
>PRK12739 elongation factor G; Reviewed
Probab=98.68 E-value=5e-08 Score=106.41 Aligned_cols=96 Identities=20% Similarity=0.215 Sum_probs=73.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-----eec------------CCCCceecccceeeecCCCCcEEEEEcCCCccC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRT-----IVS------------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-----~~~------------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
..+|+++|+.|+|||||+|+|+..... .+. ...|+|++.....+. +++.++.++||||+.+
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~- 85 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHVD- 85 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHHH-
Confidence 458999999999999999999753111 111 134788887666665 4788999999999743
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+ ...+...++.+|++++|+|+...++.+++.++.+
T Consensus 86 ------------f-~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~ 120 (691)
T PRK12739 86 ------------F-TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQ 120 (691)
T ss_pred ------------H-HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHH
Confidence 1 1236678899999999999999999999988764
No 443
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.67 E-value=6.7e-08 Score=98.57 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcC------cceeec---------CCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTIVS---------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~------~~~~~~---------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
+..+|+++|+.++|||||+++|++. ..+... ...|+|++.....+. .++.++.+|||||..++
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~f- 88 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHADY- 88 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHHH-
Confidence 3468999999999999999999842 212111 125889887666554 35678999999997431
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+..+...+..+|++++|+|+...+..+++..+..
T Consensus 89 -------------~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~ 122 (394)
T TIGR00485 89 -------------VKNMITGAAQMDGAILVVSATDGPMPQTREHILL 122 (394)
T ss_pred -------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 2345566789999999999998788877666543
No 444
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.67 E-value=9.8e-08 Score=89.61 Aligned_cols=90 Identities=21% Similarity=0.273 Sum_probs=64.6
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
..+..|+++|.+|+|||||+|.|++.. ........|+. .+....+.++.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i------~i~~~~~~~i~~vDtPg~~---------------- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI------TVVTGKKRRLTFIECPNDI---------------- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE------EEEecCCceEEEEeCCchH----------------
Confidence 345679999999999999999999862 22223334431 1112357889999999841
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 448 VNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
..+...++.+|++++|+|+...+..++..+++.
T Consensus 95 -~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~ 127 (225)
T cd01882 95 -NAMIDIAKVADLVLLLIDASFGFEMETFEFLNI 127 (225)
T ss_pred -HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHH
Confidence 223445688999999999999999888877654
No 445
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.67 E-value=8.5e-08 Score=101.70 Aligned_cols=95 Identities=22% Similarity=0.324 Sum_probs=70.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+.++|+++|++|+|||||+++|.+.... ....+|+|++.....+...++..+.+|||||...+. ..
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~----------~~--- 151 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFT----------SM--- 151 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchh----------hH---
Confidence 4579999999999999999999987543 445568888765555543344489999999974321 11
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 450 RAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
..+.++.+|++++|+|+.+....+....+
T Consensus 152 -r~rga~~aDiaILVVda~dgv~~qT~e~i 180 (587)
T TIGR00487 152 -RARGAKVTDIVVLVVAADDGVMPQTIEAI 180 (587)
T ss_pred -HHhhhccCCEEEEEEECCCCCCHhHHHHH
Confidence 12457889999999999887777766554
No 446
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=1.9e-07 Score=87.21 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCc----------c-----eeeecCCCceeeeeEEEEEeCCceeeEeecccccccc
Q 011492 161 HLLPRVAIVGRPNVGKSALFNRLVGGN----------R-----AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~----------~-----~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
....+|+.+|+.+.|||||-.+|++.- + +......|.|............+.+..+|+||+-++
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY- 88 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY- 88 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH-
Confidence 346799999999999999999987430 0 111123356666655555667788999999999642
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011492 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
. +-.+....+.|..|+|+.+.++.-.+..+.+.+.++. +.|
T Consensus 89 ------v-------------------------------KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqv--Gvp 129 (394)
T COG0050 89 ------V-------------------------------KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVP 129 (394)
T ss_pred ------H-------------------------------HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhc--CCc
Confidence 1 3334556788999999999988777777776655555 775
Q ss_pred -EEEEecccCCCch-hhhhhH-----HHH-hcCC-----Cceeeeccc-CCC-------CchhhHHHHHHhhhc
Q 011492 306 -IILAVNKCESPRK-GIMQVS-----EFW-SLGF-----SPLPISAIS-GTG-------TGELLDLVCSELKKV 358 (484)
Q Consensus 306 -~ilV~NK~Dl~~~-~~~~~~-----~~~-~~~~-----~~i~vSa~~-g~g-------i~~L~~~i~~~l~~~ 358 (484)
+++++||+|+.++ +..... +++ .+++ |++.-||+. .+| +.+|++.+..+++..
T Consensus 130 ~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 130 YIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred EEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 5667899999873 332221 111 2333 555556543 222 356777777766543
No 447
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.66 E-value=8.4e-08 Score=90.76 Aligned_cols=104 Identities=22% Similarity=0.227 Sum_probs=73.6
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
...+.|++||++|+|||||+|.|.+..... .+.---|-|+......++.|..+.+.||-||.+--.+ ..+. ..
T Consensus 176 ~s~pviavVGYTNaGKsTLikaLT~Aal~p-~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~----~Lva--AF 248 (410)
T KOG0410|consen 176 ESSPVIAVVGYTNAGKSTLIKALTKAALYP-NDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPI----QLVA--AF 248 (410)
T ss_pred CCCceEEEEeecCccHHHHHHHHHhhhcCc-cchhheeccchhhhccCCCCcEEEEeechhhhhhCcH----HHHH--HH
Confidence 345689999999999999999999643221 1122233344444556678999999999999753221 1222 34
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011492 449 NRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
..++.....+|+++.|+|.+.+..++++..+
T Consensus 249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~V 279 (410)
T KOG0410|consen 249 QATLEEVAEADLLLHVVDISHPNAEEQRETV 279 (410)
T ss_pred HHHHHHHhhcceEEEEeecCCccHHHHHHHH
Confidence 5666778999999999999999888887654
No 448
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.66 E-value=8.6e-08 Score=102.43 Aligned_cols=94 Identities=22% Similarity=0.297 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcc--eeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~--~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.|+++|+.++|||||+|+|.|... +......|.|.+.....+...++..+.+|||||..+ + +..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-------------f-i~~ 67 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-------------F-LSN 67 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-------------H-HHH
Confidence 489999999999999999998532 222233588887655555445677889999999622 1 344
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
+...+.++|++++|+|+...+.++++..+.
T Consensus 68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~ 97 (614)
T PRK10512 68 MLAGVGGIDHALLVVACDDGVMAQTREHLA 97 (614)
T ss_pred HHHHhhcCCEEEEEEECCCCCcHHHHHHHH
Confidence 566788999999999999988888776654
No 449
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.66 E-value=1.1e-07 Score=85.06 Aligned_cols=87 Identities=21% Similarity=0.218 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||++.+.........+..|.+.. .+. ..+..+.++||||.... .. .
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~----~~~-~~~~~~~l~Dt~G~~~~----------~~-~--- 69 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVE----TVT-YKNVKFNVWDVGGQDKI----------RP-L--- 69 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceE----EEE-ECCEEEEEEECCCCHHH----------HH-H---
Confidence 35899999999999999999986543322222232221 222 24567899999997321 00 1
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhh
Q 011492 451 AFRAIRRSDVVALVIEAMAC--ITEQAD 476 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~ 476 (484)
....++.+|++++|+|+.+. |.+-..
T Consensus 70 ~~~~~~~a~~ii~v~D~t~~~s~~~~~~ 97 (168)
T cd04149 70 WRHYYTGTQGLIFVVDSADRDRIDEARQ 97 (168)
T ss_pred HHHHhccCCEEEEEEeCCchhhHHHHHH
Confidence 12356899999999998873 444433
No 450
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.66 E-value=9.1e-08 Score=86.11 Aligned_cols=80 Identities=25% Similarity=0.316 Sum_probs=55.1
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||++.|.+.......+..|.+.. .+. .++..+.++||||..... ...
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~l~D~~G~~~~~--------------~~~ 76 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE----EIV-YKNIRFLMWDIGGQESLR--------------SSW 76 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE----EEE-ECCeEEEEEECCCCHHHH--------------HHH
Confidence 5899999999999999999987654433333333321 222 245678999999973210 111
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++++|++++|+|+.++
T Consensus 77 ~~~~~~~d~vi~V~D~s~~ 95 (174)
T cd04153 77 NTYYTNTDAVILVIDSTDR 95 (174)
T ss_pred HHHhhcCCEEEEEEECCCH
Confidence 2346899999999998764
No 451
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.65 E-value=9.1e-08 Score=94.72 Aligned_cols=89 Identities=26% Similarity=0.215 Sum_probs=71.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-----------------eeeEeeccccccccC
Q 011492 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNVSK 226 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDtpG~~~~~~ 226 (484)
++++|+|.||+|||||+|+|++.......++|++|.....+.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 689999999999999999999987436788899999999988877552 478999999976443
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
.... +...++..++++|++++|+++-
T Consensus 83 ~g~G-------------------------------lgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEG-------------------------------LGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccC-------------------------------cchHHHHHHHhCCEEEEEEeCC
Confidence 3221 1256778899999999999974
No 452
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.65 E-value=7.5e-08 Score=85.17 Aligned_cols=80 Identities=25% Similarity=0.335 Sum_probs=54.0
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcce--eecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRT--IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~--~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
+|+++|.+|||||||++.|.+.... ...+..|.+.. .+. ..+..+.++||||..... ..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~----~~~-~~~~~~~l~Dt~G~~~~~-----------~~--- 61 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVE----SFE-KGNLSFTAFDMSGQGKYR-----------GL--- 61 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceE----EEE-ECCEEEEEEECCCCHhhH-----------HH---
Confidence 4789999999999999999986422 23344443332 122 345678999999974321 11
Q ss_pred HHHHhhcCcEEEEEEeCcccc
Q 011492 451 AFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+.++.
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~ 82 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRL 82 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHH
Confidence 113468999999999987643
No 453
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.65 E-value=1e-07 Score=102.70 Aligned_cols=97 Identities=24% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC---CCCcEEEEEcCCCccCccccCCCCchhHH
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP---EGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~---~g~~i~liDTPG~~~~~~~~~~~~~~~~~ 446 (484)
+.+.|+++|+.|+|||||+++|.+.... ....+|.|++.....+... .+..+.+|||||...+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F------------- 308 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAF------------- 308 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHH-------------
Confidence 4568999999999999999999986543 3445677766544333221 3578999999996321
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011492 447 SVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
. ....+.++.+|++++|+|+.+++..+....++.
T Consensus 309 ~-~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~ 342 (742)
T CHL00189 309 S-SMRSRGANVTDIAILIIAADDGVKPQTIEAINY 342 (742)
T ss_pred H-HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH
Confidence 1 112346789999999999998877776655543
No 454
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=8.1e-08 Score=91.53 Aligned_cols=90 Identities=23% Similarity=0.258 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-----------------ceeeEeeccccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDtpG~~~~ 224 (484)
+.++++|+|.||+|||||+|+|+..... ..++|++|.+....++.+.. ..+++.|++|+...
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 5789999999999999999999987744 88999999999888766533 24799999999876
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC
Q 011492 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ 283 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~ 283 (484)
....+.++ ..++..++.+|.++.|+++.
T Consensus 98 As~G~GLG-------------------------------N~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLG-------------------------------NKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCch-------------------------------HHHHHhhhhccceeEEEEec
Confidence 66655443 56678889999999999853
No 455
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.63 E-value=7.9e-08 Score=85.03 Aligned_cols=83 Identities=22% Similarity=0.230 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|+|++..... ..+..|.+......... .....+.++||||..... ...
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~--------------~~~ 66 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFR--------------TLT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhh--------------hhh
Confidence 68999999999999999999875432 33444444332222221 122457899999964211 111
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 67 ~~~~~~~d~~i~v~d~~~~ 85 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRR 85 (161)
T ss_pred HHHhCCCCEEEEEEECCCH
Confidence 2346889999999998753
No 456
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=2.2e-08 Score=100.25 Aligned_cols=140 Identities=15% Similarity=0.132 Sum_probs=79.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhh-hhhhh-
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMED-LAITT- 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~-~~~~~- 239 (484)
...|.+++|++|+|||||+++|...+. ...+ +.+...+........+.-.||.-.. +-.....+... ...++
T Consensus 105 ~GrRYGLvGrNG~GKsTLLRaia~~~v---~~f~--veqE~~g~~t~~~~~~l~~D~~~~d-fl~~e~~l~~~~~l~ei~ 178 (582)
T KOG0062|consen 105 RGRRYGLVGRNGIGKSTLLRAIANGQV---SGFH--VEQEVRGDDTEALQSVLESDTERLD-FLAEEKELLAGLTLEEIY 178 (582)
T ss_pred cccccceeCCCCCcHHHHHHHHHhcCc---CccC--chhheeccchHHHhhhhhccHHHHH-HHHhhhhhhccchHHHHH
Confidence 357899999999999999999997432 1111 1111111111111122333333211 00001011111 11111
Q ss_pred --hcccCCCchhHHHHHHhhchHHHH-HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe--EEEE
Q 011492 240 --TIGMEGIPLATREAAVARMPSMIE-RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF--IILA 309 (484)
Q Consensus 240 --~~~~~G~~~~~~~~~v~~~~~~~~-~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p--~ilV 309 (484)
.+.--||+++.....+..++..+. +.+++....++..|+++| +|.+++|...+.||..++...+ +++|
T Consensus 179 ~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLD--EPTNhLDv~av~WLe~yL~t~~~T~liV 251 (582)
T KOG0062|consen 179 DKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLD--EPTNHLDVVAVAWLENYLQTWKITSLIV 251 (582)
T ss_pred HHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeec--CCcccchhHHHHHHHHHHhhCCceEEEE
Confidence 222338888888999999976654 556666666777778888 8999999988888887764443 4444
No 457
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.63 E-value=1.1e-07 Score=103.24 Aligned_cols=96 Identities=25% Similarity=0.344 Sum_probs=71.3
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011492 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
.+.+.|+++|+.|+|||||+++|.+..+. .+...|.|.+.....+. +++..+.+|||||...+. ..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~-~~~~~ItfiDTPGhe~F~----------~m-- 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVE-TNGGKITFLDTPGHEAFT----------AM-- 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEE-ECCEEEEEEECCCCccch----------hH--
Confidence 35679999999999999999999886543 44556788776655554 357889999999975421 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 449 NRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
..+.++.+|++++|+|+.+++..+....+.
T Consensus 354 --~~rga~~aDiaILVVdAddGv~~qT~e~i~ 383 (787)
T PRK05306 354 --RARGAQVTDIVVLVVAADDGVMPQTIEAIN 383 (787)
T ss_pred --HHhhhhhCCEEEEEEECCCCCCHhHHHHHH
Confidence 124578899999999999877777665543
No 458
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.63 E-value=9e-08 Score=103.39 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=26.8
Q ss_pred hhhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 364 LVEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 364 ~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
.......+..++|+|.||+|||||++.|+|..
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~ 374 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLRLV 374 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34445567799999999999999999999964
No 459
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.63 E-value=9.1e-08 Score=84.77 Aligned_cols=83 Identities=20% Similarity=0.241 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|++++..... ..+..|.+.......+. ..+-.+.+|||||-... . ..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-~~~~~~~i~D~~G~~~~----------~----~~ 66 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-DTTVKFEIWDTAGQERY----------R----SL 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCchHHH----------H----HH
Confidence 378999999999999999999986543 33333433322222222 12345789999995211 1 11
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011492 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
....++.+|++++|+|+..
T Consensus 67 ~~~~~~~~~~~i~v~d~~~ 85 (163)
T cd01860 67 APMYYRGAAAAIVVYDITS 85 (163)
T ss_pred HHHHhccCCEEEEEEECcC
Confidence 1235678999999999864
No 460
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.63 E-value=1.1e-07 Score=85.02 Aligned_cols=83 Identities=22% Similarity=0.155 Sum_probs=53.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeec-CCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVS-PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~-~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|.+++....... +..|.+......... .....+.+|||||.... ...
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~--------------~~~ 69 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESF--------------RSI 69 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHH--------------HHH
Confidence 48999999999999999999987543322 222333322222221 11236789999995221 111
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011492 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
....++.+|++++|+|+.+
T Consensus 70 ~~~~~~~~d~il~v~d~~~ 88 (168)
T cd01866 70 TRSYYRGAAGALLVYDITR 88 (168)
T ss_pred HHHHhccCCEEEEEEECCC
Confidence 2356789999999999875
No 461
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.62 E-value=9.6e-08 Score=84.26 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=54.1
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|++++.......+..|.+.+. +. ..+..+.+|||||.... .. ...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~----~~-~~~~~~~i~D~~G~~~~-----------~~---~~~ 61 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVET----VE-YKNVSFTVWDVGGQDKI-----------RP---LWK 61 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEE----EE-ECCEEEEEEECCCChhh-----------HH---HHH
Confidence 4799999999999999999998633333333433322 22 24567899999996431 11 112
Q ss_pred HHhhcCcEEEEEEeCccc
Q 011492 453 RAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~ 470 (484)
..++.+|++++|+|+..+
T Consensus 62 ~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 62 HYYENTNGIIFVVDSSDR 79 (158)
T ss_pred HHhccCCEEEEEEECCCH
Confidence 345789999999999764
No 462
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.62 E-value=1.7e-07 Score=85.51 Aligned_cols=80 Identities=21% Similarity=0.268 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|.+.......+..+.+ ...+. .++..+.++||||.... . ..
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~----~~~i~-~~~~~~~l~D~~G~~~~-----------~---~~ 79 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPT----SEELT-IGNIKFKTFDLGGHEQA-----------R---RL 79 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcc----eEEEE-ECCEEEEEEECCCCHHH-----------H---HH
Confidence 458999999999999999999986543222222222 22232 35677899999995321 1 11
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011492 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
....++++|++++|+|+.+
T Consensus 80 ~~~~~~~ad~iilV~D~~~ 98 (190)
T cd00879 80 WKDYFPEVDGIVFLVDAAD 98 (190)
T ss_pred HHHHhccCCEEEEEEECCc
Confidence 2245688999999999875
No 463
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.62 E-value=1.4e-07 Score=88.47 Aligned_cols=88 Identities=22% Similarity=0.180 Sum_probs=58.1
Q ss_pred CEEEEEcCCCCCchhHHHhhhcC-cceeecCC-CCceecccceeeecC--CCCcEEEEEcCCCccCccccCCCCchhHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGE-DRTIVSPI-SGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~-~~~~~~~~-~gtt~~~~~~~~~~~--~g~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
..|+++|++++|||||+|.|+|. ..|.++.. ..||+.......... .+..++++||||+.+.... . +.
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~------~--~~ 79 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERG------E--FE 79 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccC------c--hh
Confidence 47999999999999999999998 46776654 456665433222211 3578999999999765321 1 11
Q ss_pred HHHHHHHhh--cCcEEEEEEeC
Q 011492 448 VNRAFRAIR--RSDVVALVIEA 467 (484)
Q Consensus 448 ~~~~~~~~~--~~d~~l~V~~~ 467 (484)
....+.++. -++++++.++.
T Consensus 80 ~~~~~~~l~~llss~~i~n~~~ 101 (224)
T cd01851 80 DDARLFALATLLSSVLIYNSWE 101 (224)
T ss_pred hhhHHHHHHHHHhCEEEEeccC
Confidence 111222222 58999998885
No 464
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.62 E-value=2.7e-07 Score=86.69 Aligned_cols=111 Identities=24% Similarity=0.252 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCC-----------------------------------------------
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI----------------------------------------------- 402 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~----------------------------------------------- 402 (484)
..++++++|.+|+||||++++|+|...+..+..
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999742221100
Q ss_pred ---CCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhc-CcEEEEEEeCcccccHHh-hh
Q 011492 403 ---SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRR-SDVVALVIEAMACITEQA-DW 477 (484)
Q Consensus 403 ---~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~l~V~~~~~~~~~~d-~~ 477 (484)
.+...+.+...+..++...+.||||||+.....-. ........+...+...++. .+++|+|+|+...++.+| ..
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~-~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGD-QPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCC-ccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 01111122222333344678999999996432101 0011222333335556664 469999999988888888 46
Q ss_pred hhhh
Q 011492 478 RDHR 481 (484)
Q Consensus 478 ~~~~ 481 (484)
++++
T Consensus 184 ia~~ 187 (240)
T smart00053 184 LAKE 187 (240)
T ss_pred HHHH
Confidence 6554
No 465
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.62 E-value=9.1e-08 Score=94.43 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcC----cce-----------eecCCCC---ceecccc---eeeecCCC----CcEEE
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGE----DRT-----------IVSPISG---TTRDAID---TEFTGPEG----QKFRL 424 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~----~~~-----------~~~~~~g---tt~~~~~---~~~~~~~g----~~i~l 424 (484)
-...|+++|+.++|||||+|.+++. +.. .++..+| +|++... ......-. .++.+
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3458999999999999999999998 555 5678889 8888766 22222222 67999
Q ss_pred EEcCCCccCccccCCCCch---------------hHHHHHHHHHHhh-cCcEEEEEE-eCc------ccccHHhhhhhh
Q 011492 425 IDTAGIRKRAAIASSGSTT---------------EALSVNRAFRAIR-RSDVVALVI-EAM------ACITEQADWRDH 480 (484)
Q Consensus 425 iDTPG~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~-~~d~~l~V~-~~~------~~~~~~d~~~~~ 480 (484)
|||+|+...+........- .....-.+.+.+. .+++.|+|. |.+ ....+-++++++
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999998765332110000 0001122556677 899999998 764 345566666554
No 466
>PLN03118 Rab family protein; Provisional
Probab=98.62 E-value=9.4e-08 Score=88.92 Aligned_cols=85 Identities=21% Similarity=0.248 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.......+..|.........+. .....+.|+||||..... . +
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~----------~-~--- 78 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFR----------T-L--- 78 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhH----------H-H---
Confidence 358999999999999999999987643333333433322222211 112367899999974321 1 1
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011492 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 79 ~~~~~~~~d~~vlv~D~~~~ 98 (211)
T PLN03118 79 TSSYYRNAQGIILVYDVTRR 98 (211)
T ss_pred HHHHHhcCCEEEEEEECCCH
Confidence 12346789999999998764
No 467
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.62 E-value=1.2e-07 Score=84.73 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=54.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|.+.+.......+..|.++. .+. ..+..+.++||||-... .. ...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~----~~~-~~~~~~~i~D~~G~~~~-----------~~---~~~ 61 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT----KLR-LDKYEVCIFDLGGGANF-----------RG---IWV 61 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE----EEE-ECCEEEEEEECCCcHHH-----------HH---HHH
Confidence 378999999999999999998733333444455432 222 24567899999995321 11 123
Q ss_pred HHhhcCcEEEEEEeCccc
Q 011492 453 RAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~ 470 (484)
..++.+|++++|+|+..+
T Consensus 62 ~~~~~a~~ii~V~D~s~~ 79 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDD 79 (167)
T ss_pred HHHcCCCEEEEEEECCch
Confidence 457899999999998764
No 468
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.61 E-value=9.4e-08 Score=94.62 Aligned_cols=90 Identities=23% Similarity=0.231 Sum_probs=68.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC----------------CcEEEEEcCCCccCcc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG----------------QKFRLIDTAGIRKRAA 435 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g----------------~~i~liDTPG~~~~~~ 435 (484)
..++|+|.||+|||||+|+|.+.....+...|.||..........++. ..+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 478999999999999999999987546777788888887766655443 2689999999976321
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
.........+..++.+|++++|+++.
T Consensus 83 -------~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 -------KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred -------cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 11122345667899999999999974
No 469
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2e-07 Score=89.58 Aligned_cols=152 Identities=22% Similarity=0.262 Sum_probs=96.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcc------eeeec-------CCCceeeeeEEE---------EEe------------
Q 011492 163 LPRVAIVGRPNVGKSALFNRLVGGNR------AIVVD-------EPGVTRDRMYGR---------SFW------------ 208 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~------~~~~~-------~~~~t~~~~~~~---------~~~------------ 208 (484)
..||+++|...+|||||+-.|+.... +...- ..|.|....... +.+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 67999999999999999998874311 00000 001111110000 001
Q ss_pred CCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc
Q 011492 209 GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA 288 (484)
Q Consensus 209 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~ 288 (484)
...-++++|.+|+..+... ..+++-|+. .|..++|+.+..+.+.
T Consensus 247 SSKlvTfiDLAGh~kY~~T-----------Ti~gLtgY~-------------------------Ph~A~LvVsA~~Gi~~ 290 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKT-----------TIHGLTGYT-------------------------PHFACLVVSADRGITW 290 (591)
T ss_pred hcceEEEeecccchhhhee-----------eeeecccCC-------------------------CceEEEEEEcCCCCcc
Confidence 1123789999988643322 234555543 4888999999899999
Q ss_pred ccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-----h--------------------------HHHHhcC-CCceee
Q 011492 289 ADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-----V--------------------------SEFWSLG-FSPLPI 336 (484)
Q Consensus 289 ~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-----~--------------------------~~~~~~~-~~~i~v 336 (484)
...+.+-++... +.|++++++|+|+..+.... . .+....+ .|+|.+
T Consensus 291 tTrEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~v 368 (591)
T KOG1143|consen 291 TTREHLGLIAAL--NIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAV 368 (591)
T ss_pred ccHHHHHHHHHh--CCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEE
Confidence 988988888776 99999999999987642110 0 0011112 277889
Q ss_pred ecccCCCCchhhHHHH
Q 011492 337 SAISGTGTGELLDLVC 352 (484)
Q Consensus 337 Sa~~g~gi~~L~~~i~ 352 (484)
|..+|+|++-|...+.
T Consensus 369 SsVsGegl~ll~~fLn 384 (591)
T KOG1143|consen 369 SSVSGEGLRLLRTFLN 384 (591)
T ss_pred eecCccchhHHHHHHh
Confidence 9999999887766553
No 470
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.60 E-value=1.4e-07 Score=83.46 Aligned_cols=85 Identities=22% Similarity=0.199 Sum_probs=53.8
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
+|+++|.+|+|||||+|.+++.... ....+..+.+.....+.. ++ ..+.++||||.... . ..
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----------~----~~ 65 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERF----------R----SI 65 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHH----------H----HH
Confidence 6899999999999999999987532 222222222211122222 33 35789999995321 1 12
Q ss_pred HHHHhhcCcEEEEEEeCcccccH
Q 011492 451 AFRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
....++.+|++++|+|+.+.-+-
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~s~ 88 (164)
T smart00175 66 TSSYYRGAVGALLVYDITNRESF 88 (164)
T ss_pred HHHHhCCCCEEEEEEECCCHHHH
Confidence 23456889999999998764443
No 471
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.60 E-value=6.5e-08 Score=104.78 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=36.2
Q ss_pred HHhhchH-HHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC--CCeEEEEecc
Q 011492 254 AVARMPS-MIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM--DKFIILAVNK 312 (484)
Q Consensus 254 ~v~~~~~-~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~--~~p~ilV~NK 312 (484)
.+..++. +..+.+++.+...+.-|+++| +|.+.+|.....++...+. +..+++|-+.
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLD--EPt~~LD~~~~~~L~~~L~~~~~tvlivsHd 212 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLD--EPTNHLDIETIEWLEGFLKTFQGSIIFISHD 212 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEc--CCCCccCHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3444433 334666666666777888898 8999999887766655431 3455555444
No 472
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.59 E-value=1.4e-07 Score=83.58 Aligned_cols=82 Identities=22% Similarity=0.274 Sum_probs=54.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|++++... +...+.++++....... .++ ..+.++||||..+.. . +
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~----------~-~-- 66 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCE-IDGQWAILDILDTAGQEEFS----------A-M-- 66 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEE-ECCEEEEEEEEECCCCcchh----------H-H--
Confidence 4799999999999999999998643 23333444333222222 233 357789999974321 1 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011492 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 67 -~~~~~~~~~~~ilv~d~~~~ 86 (164)
T cd04145 67 -REQYMRTGEGFLLVFSVTDR 86 (164)
T ss_pred -HHHHHhhCCEEEEEEECCCH
Confidence 12346789999999998764
No 473
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.59 E-value=2.1e-07 Score=98.56 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=62.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC-----------------CCCcEEEEEcCCCcc
Q 011492 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-----------------EGQKFRLIDTAGIRK 432 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~-----------------~g~~i~liDTPG~~~ 432 (484)
+.+.|+++|++|+|||||+|+|.+..... ..-.|+|++.-...+... ...++.+|||||...
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~-~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAK-REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccccc-ccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 34689999999999999999999975432 222235543221111110 012488999999632
Q ss_pred CccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
+ ... ..+..+.+|++++|+|+...+..++...++
T Consensus 82 f----------~~l----~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~ 115 (590)
T TIGR00491 82 F----------TNL----RKRGGALADLAILIVDINEGFKPQTQEALN 115 (590)
T ss_pred H----------HHH----HHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence 1 111 223567999999999999888887776654
No 474
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.59 E-value=1.9e-08 Score=93.63 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=47.8
Q ss_pred HHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-hh----hHHHHh-----cCCCceeee
Q 011492 268 AAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQ----VSEFWS-----LGFSPLPIS 337 (484)
Q Consensus 268 ~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~----~~~~~~-----~~~~~i~vS 337 (484)
.....+|.+++|+-+..+...+-.. .......=++|+||+|...... .. .+.+.. +..|++.+|
T Consensus 138 ~I~~~aD~~v~v~~Pg~GD~iQ~~K------aGimEiaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 138 DIADMADTVVLVLVPGLGDEIQAIK------AGIMEIADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp HHHTTSSEEEEEEESSTCCCCCTB-------TTHHHH-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred HHHHhcCeEEEEecCCCccHHHHHh------hhhhhhccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEE
Confidence 3457789999999765444333211 1111234589999999543221 11 111111 123788999
Q ss_pred cccCCCCchhhHHHHHHhh
Q 011492 338 AISGTGTGELLDLVCSELK 356 (484)
Q Consensus 338 a~~g~gi~~L~~~i~~~l~ 356 (484)
|.++.|+++|++.|.++..
T Consensus 212 A~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 9999999999999987654
No 475
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.58 E-value=1.1e-07 Score=82.49 Aligned_cols=55 Identities=38% Similarity=0.598 Sum_probs=45.7
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccc
Q 011492 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL 222 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~ 222 (484)
+++++|.+|+|||||+|+|++.....++..+++|+.... +.++ ..+.++||||+.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQT--IFLT-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEE--EEeC-CCEEEEECCCcC
Confidence 899999999999999999999887677788888877554 3443 368999999985
No 476
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.58 E-value=1.6e-07 Score=84.11 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|++.+.... ... +|+......+. ..+..+.++||||..... ....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~--~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~~--------------~~~~ 61 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPI--PTIGFNVETVE-YKNLKFTIWDVGGKHKLR--------------PLWK 61 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcC--CcCceeEEEEE-ECCEEEEEEECCCChhcc--------------hHHH
Confidence 4789999999999999999986321 222 22221111222 345678999999974321 0122
Q ss_pred HHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011492 453 RAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
..++.+|++++|+|+.++ |++-..++
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~ 89 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSEL 89 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHH
Confidence 346889999999998764 54444433
No 477
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.57 E-value=2e-07 Score=87.84 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=50.5
Q ss_pred HhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-----hhhHH-----HHhcC--CCceee
Q 011492 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE-----FWSLG--FSPLPI 336 (484)
Q Consensus 269 ~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~-----~~~~~--~~~i~v 336 (484)
....+|.+++|.-+.-+ .+.+ .++......-=++|+||.|...... ...+. +...+ .+++.+
T Consensus 161 I~~~aDt~~~v~~pg~G---D~~Q---~iK~GimEiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t 234 (323)
T COG1703 161 IANMADTFLVVMIPGAG---DDLQ---GIKAGIMEIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTT 234 (323)
T ss_pred HhhhcceEEEEecCCCC---cHHH---HHHhhhhhhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEe
Confidence 34668888888853322 2222 2333222445689999999654321 11111 11122 368899
Q ss_pred ecccCCCCchhhHHHHHHhhh
Q 011492 337 SAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 337 Sa~~g~gi~~L~~~i~~~l~~ 357 (484)
||.+|+|+++|++.+.+..+.
T Consensus 235 ~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 235 SALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred eeccCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 478
>PLN03126 Elongation factor Tu; Provisional
Probab=98.57 E-value=2e-07 Score=96.54 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=70.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce---------------eecCCCCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRT---------------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~---------------~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
..+++++|+.++|||||+++|++.... ......|.|.+.....+. +++..+.+|||||..+
T Consensus 81 ~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~--- 156 (478)
T PLN03126 81 HVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHAD--- 156 (478)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHH---
Confidence 458999999999999999999963211 111224788777655554 4678999999999743
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011492 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.+..+...+..+|+.++|+|+......+.+..+.
T Consensus 157 -----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~ 190 (478)
T PLN03126 157 -----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 190 (478)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHH
Confidence 1345567778999999999999888777766553
No 479
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.56 E-value=1.6e-07 Score=87.42 Aligned_cols=92 Identities=24% Similarity=0.357 Sum_probs=59.3
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeec------------------CCCCceecccceeeec----CCCCcEEEEEcCCC
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVS------------------PISGTTRDAIDTEFTG----PEGQKFRLIDTAGI 430 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------~~~gtt~~~~~~~~~~----~~g~~i~liDTPG~ 430 (484)
+|+++|+.|+|||||+++|++....... ...|.|.......+.+ .....+.+|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875432210 0013333222222211 12356899999998
Q ss_pred ccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 431 RKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
.+. ...+...++.+|++++|+|+....+.+++.+
T Consensus 82 ~~f--------------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~ 115 (213)
T cd04167 82 VNF--------------MDEVAAALRLSDGVVLVVDVVEGVTSNTERL 115 (213)
T ss_pred cch--------------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHH
Confidence 542 1224456789999999999988776665543
No 480
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.56 E-value=2.9e-07 Score=81.51 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=51.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||++.+....... ..|.+..+. ..+. .....+.+|||||.... . ....
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt~g~~~--~~~~-~~~~~~~l~D~~G~~~~-----------~---~~~~ 62 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNV--ETVE-YKNISFTVWDVGGQDKI-----------R---PLWR 62 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc--cCCCCCcce--EEEE-ECCEEEEEEECCCCHhH-----------H---HHHH
Confidence 68999999999999999996543322 222211111 1122 24567899999997321 0 0112
Q ss_pred HHhhcCcEEEEEEeCccc
Q 011492 453 RAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~ 470 (484)
..++++|++++|+|+.++
T Consensus 63 ~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred HHhcCCCEEEEEEeCCCH
Confidence 357899999999998763
No 481
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.56 E-value=2e-07 Score=82.75 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=51.6
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec-CCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~-~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|++++..... ...+..+.+.....+.. ...-.+.++||||.... . ...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~---~~~ 66 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVS-KYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEY-----------L---EVR 66 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CCCCccceeEEEEEEEECCeEEEEEEEECCccHHH-----------H---HHH
Confidence 68999999999999999999875332 22222211111111111 12246789999996321 1 111
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 67 ~~~~~~~d~~ilv~D~~~~ 85 (168)
T cd04119 67 NEFYKDTQGVLLVYDVTDR 85 (168)
T ss_pred HHHhccCCEEEEEEECCCH
Confidence 2346899999999998764
No 482
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.56 E-value=2.1e-07 Score=82.16 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=52.0
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|.|.........+..|... ..+. ..+..+.++||||.... . ....
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~----~~~~-~~~~~~~i~Dt~G~~~~-----------~---~~~~ 61 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV----ETVT-YKNLKFQVWDLGGQTSI-----------R---PYWR 61 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe----EEEE-ECCEEEEEEECCCCHHH-----------H---HHHH
Confidence 47999999999999999997665432222112211 1222 24567899999997421 0 1112
Q ss_pred HHhhcCcEEEEEEeCccc
Q 011492 453 RAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~ 470 (484)
..++.+|++++|+|+..+
T Consensus 62 ~~~~~~~~ii~v~d~~~~ 79 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDR 79 (158)
T ss_pred HHhcCCCEEEEEEECCCH
Confidence 356789999999998763
No 483
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=3.6e-07 Score=97.14 Aligned_cols=31 Identities=35% Similarity=0.435 Sum_probs=26.0
Q ss_pred hhhccCCCEEEEEcCCCCCchhHHHhhhcCc
Q 011492 365 VEEENRIPAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 365 ~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
......+..++++|+||+|||||++.|+|..
T Consensus 339 s~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 339 NLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3444567799999999999999999999963
No 484
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.56 E-value=2.1e-07 Score=96.75 Aligned_cols=91 Identities=23% Similarity=0.335 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecC----------CC----------------------CceecccceeeecCC
Q 011492 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSP----------IS----------------------GTTRDAIDTEFTGPE 418 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~----------~~----------------------gtt~~~~~~~~~~~~ 418 (484)
..+|+++|+.++|||||+++|+......... .. |.|.+.....+. ++
T Consensus 27 ~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~-~~ 105 (474)
T PRK05124 27 LLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS-TE 105 (474)
T ss_pred ceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec-cC
Confidence 4689999999999999999998654322110 01 455555443443 46
Q ss_pred CCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhh
Q 011492 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQAD 476 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~ 476 (484)
+.++.+|||||..+ ....+...++.+|++++|+|+...+.++++
T Consensus 106 ~~~i~~iDTPGh~~--------------f~~~~~~~l~~aD~allVVDa~~G~~~qt~ 149 (474)
T PRK05124 106 KRKFIIADTPGHEQ--------------YTRNMATGASTCDLAILLIDARKGVLDQTR 149 (474)
T ss_pred CcEEEEEECCCcHH--------------HHHHHHHHHhhCCEEEEEEECCCCccccch
Confidence 78999999999522 123344567999999999999888765443
No 485
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.56 E-value=2.2e-07 Score=82.53 Aligned_cols=83 Identities=22% Similarity=0.224 Sum_probs=52.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|++++.... ....+..+.+.....+.. ++ -.+.++||||..... . .
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~----------~-~-- 68 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFN-LDSKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQERYR----------A-I-- 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHH----------H-H--
Confidence 47999999999999999999987532 222233322222222222 23 257899999964211 1 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011492 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.++++++|+|+.+.
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~ 88 (165)
T cd01868 69 -TSAYYRGAVGALLVYDITKK 88 (165)
T ss_pred -HHHHHCCCCEEEEEEECcCH
Confidence 12346789999999998753
No 486
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.55 E-value=1.9e-07 Score=87.38 Aligned_cols=83 Identities=24% Similarity=0.334 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcce-------------------------e-----ecCCCCceecccceeeecCCCCcE
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRT-------------------------I-----VSPISGTTRDAIDTEFTGPEGQKF 422 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~-------------------------~-----~~~~~gtt~~~~~~~~~~~~g~~i 422 (484)
+|+++|+.|+|||||+.+|+..... . .....|+|++.....+. +.+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~-~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFE-TEKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEe-eCCeEE
Confidence 4799999999999999999742110 0 01123899998887776 478899
Q ss_pred EEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011492 423 RLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 423 ~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.++||||..+. ...+...++.+|++++|+|+...
T Consensus 80 ~liDtpG~~~~--------------~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 80 TILDAPGHRDF--------------VPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEEECCChHHH--------------HHHHHHHhhhCCEEEEEEECCCC
Confidence 99999997432 12344567889999999999873
No 487
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.55 E-value=3.1e-07 Score=89.52 Aligned_cols=60 Identities=40% Similarity=0.545 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
...+|+++|.+|||||||+|+|++.....+++.+|+|+.... +.+ +..+.++||||+...
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKL-GKGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEe-CCcEEEEECCCcCCC
Confidence 357899999999999999999999887788999999988754 333 456899999999653
No 488
>PLN03073 ABC transporter F family; Provisional
Probab=98.55 E-value=5.7e-08 Score=105.71 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=37.7
Q ss_pred HHHHhhchHH-HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC--CCeEEEEecccC
Q 011492 252 EAAVARMPSM-IERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM--DKFIILAVNKCE 314 (484)
Q Consensus 252 ~~~v~~~~~~-~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~--~~p~ilV~NK~D 314 (484)
...+..++.. ..+..++.....+.-++++| +|.+.+|.....++...+. +..+++|-+..+
T Consensus 339 ~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLD--EPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~ 402 (718)
T PLN03073 339 VKATKTFSGGWRMRIALARALFIEPDLLLLD--EPTNHLDLHAVLWLETYLLKWPKTFIVVSHARE 402 (718)
T ss_pred hCchhhCCHHHHHHHHHHHHHhcCCCEEEEE--CCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence 3444555333 33556666666777889999 8999999876665554321 455666654443
No 489
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.55 E-value=2.6e-07 Score=80.92 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=51.6
Q ss_pred EEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHH
Q 011492 374 IAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFR 453 (484)
Q Consensus 374 i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~ 453 (484)
|+++|.+|+|||||+|.|.+.... ....|....+... .. ..+..+.++||||.... . .....
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~--~~-~~~~~~~~~D~~g~~~~----------~----~~~~~ 63 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRK--VT-KGNVTLKVWDLGGQPRF----------R----SMWER 63 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEE--EE-ECCEEEEEEECCCCHhH----------H----HHHHH
Confidence 789999999999999999997432 2223332222211 21 23467899999996421 0 11223
Q ss_pred HhhcCcEEEEEEeCcc
Q 011492 454 AIRRSDVVALVIEAMA 469 (484)
Q Consensus 454 ~~~~~d~~l~V~~~~~ 469 (484)
.++.+|++++|+|+..
T Consensus 64 ~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 64 YCRGVNAIVYVVDAAD 79 (159)
T ss_pred HHhcCCEEEEEEECCC
Confidence 4678999999999864
No 490
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.55 E-value=2.1e-07 Score=82.82 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=51.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|.+.+...... .+..|.......... ....-.+.+|||||..... ...
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~--------------~~~ 67 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYR--------------TIT 67 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHH--------------HHH
Confidence 789999999999999999998753221 111122111111111 1112357899999963211 112
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011492 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 68 ~~~~~~~~~~l~v~d~~~~ 86 (165)
T cd01865 68 TAYYRGAMGFILMYDITNE 86 (165)
T ss_pred HHHccCCcEEEEEEECCCH
Confidence 3457899999999998653
No 491
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.55 E-value=2.1e-07 Score=83.07 Aligned_cols=83 Identities=23% Similarity=0.191 Sum_probs=52.1
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.+.+... .....+..+.+.....+. ..+ -.+.++||||.... ..
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f-~~~~~~t~~~~~~~~~~~-~~~~~~~l~l~D~~g~~~~----------~~---- 67 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF-NPSFISTIGIDFKIRTIE-LDGKKIKLQIWDTAGQERF----------RT---- 67 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcC-CcccccCccceEEEEEEE-ECCEEEEEEEEeCCchHHH----------HH----
Confidence 4899999999999999999998652 222222222111111111 123 35789999996321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011492 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 68 ~~~~~~~~ad~~i~v~d~~~~ 88 (167)
T cd01867 68 ITTAYYRGAMGIILVYDITDE 88 (167)
T ss_pred HHHHHhCCCCEEEEEEECcCH
Confidence 122457899999999998754
No 492
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.54 E-value=1.3e-07 Score=83.39 Aligned_cols=57 Identities=32% Similarity=0.478 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecccc
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
...+|+++|.+|+|||||+|+|++.....++..+++|........ +..+.++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 468899999999999999999999876677888899988776433 356999999995
No 493
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.54 E-value=2.3e-07 Score=98.82 Aligned_cols=91 Identities=25% Similarity=0.264 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcc--eeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDR--TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~--~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.|+++|+.|+|||||+|+|.|... +......|+|.+.....+.. ++..+.+|||||... + ...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-------------f-~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-------------F-ISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-------------H-HHH
Confidence 589999999999999999998542 22223457887765555543 457889999999521 1 344
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 451 AFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
+...+.++|++++|+|+...+..+....
T Consensus 67 ~~~g~~~aD~aILVVDa~~G~~~qT~eh 94 (581)
T TIGR00475 67 AIAGGGGIDAALLVVDADEGVMTQTGEH 94 (581)
T ss_pred HHhhhccCCEEEEEEECCCCCcHHHHHH
Confidence 5567789999999999988665554433
No 494
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.54 E-value=2.3e-07 Score=91.60 Aligned_cols=62 Identities=37% Similarity=0.556 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011492 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
...+++++|.||||||||||+|++...+.+++.||+|+..+.-.. ...+.++||||+.....
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~---~~~i~LlDtPGii~~~~ 192 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL---DDGIYLLDTPGIIPPKF 192 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEc---CCCeEEecCCCcCCCCc
Confidence 357899999999999999999999999999999999998877443 34589999999975443
No 495
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.54 E-value=2.6e-07 Score=82.25 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=52.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.+++.... ....++.+.+.....+.. ++ ..+.++||||.... . .
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~-----------~---~ 66 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERF-----------R---T 66 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhH-----------H---H
Confidence 37899999999999999999976432 222333332222122221 22 35789999995321 0 1
Q ss_pred HHHHHhhcCcEEEEEEeCcc
Q 011492 450 RAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~ 469 (484)
.....++.+|++++|+|+.+
T Consensus 67 ~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 67 ITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred HHHHHhCcCCEEEEEEECcC
Confidence 11234688999999999875
No 496
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.53 E-value=2.2e-07 Score=82.16 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=51.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|.|++...... .+..|........... .....+.+|||||..... ...
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~--------------~~~ 66 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-GKRVKLQIWDTAGQERFR--------------SVT 66 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEECcchHHHH--------------HhH
Confidence 689999999999999999997653211 1222222221111111 112357799999963210 112
Q ss_pred HHHhhcCcEEEEEEeCcccc
Q 011492 452 FRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+.++-
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~ 86 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRT 86 (161)
T ss_pred HHHhcCCCEEEEEEECCCHH
Confidence 24568999999999997743
No 497
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.9e-07 Score=91.07 Aligned_cols=90 Identities=28% Similarity=0.341 Sum_probs=64.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC-----------------CCcEEEEEcCCCccCc
Q 011492 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-----------------GQKFRLIDTAGIRKRA 434 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~-----------------g~~i~liDTPG~~~~~ 434 (484)
.+++|||.||||||||+|+|.... +.....|-||.+.-......++ .-.+.++|.+|+....
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 578999999999999999999887 6667777666654333222111 1357899999997632
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011492 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
....-+..+-+..+|.+|++++|||+.+
T Consensus 82 -------s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 -------SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred -------ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 2223334556678999999999999863
No 498
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.53 E-value=2.2e-07 Score=87.65 Aligned_cols=83 Identities=19% Similarity=0.197 Sum_probs=41.7
Q ss_pred cCeEEEEeeCCCCCCcccH---HHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHH---------------H-------
Q 011492 273 SCVIIFLVDGQAGLTAADE---EIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEF---------------W------- 327 (484)
Q Consensus 273 ~d~vilVvD~~~~~~~~~~---~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~---------------~------- 327 (484)
.-++++++|+......... .+.........+.|.+.|+||+|+..........+ .
T Consensus 123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~ 202 (238)
T PF03029_consen 123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA 202 (238)
T ss_dssp --EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH
T ss_pred ceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 4578899997543221111 11111111113899999999999987321100000 0
Q ss_pred ----hcC-C-CceeeecccCCCCchhhHHHHHHh
Q 011492 328 ----SLG-F-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 328 ----~~~-~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
..+ . .++++|+.+++|+.+|+..+.+.+
T Consensus 203 ~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 203 ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 011 2 578999999999999999887654
No 499
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.53 E-value=1.7e-07 Score=95.78 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=65.1
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeec--------------------------------CCCCceecccceeeecCCCC
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVS--------------------------------PISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~--------------------------------~~~gtt~~~~~~~~~~~~g~ 420 (484)
+|+++|+.++|||||+++|+........ ..-|.|++.....+. +++.
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~-~~~~ 80 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFS-TDKR 80 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEc-cCCe
Confidence 7899999999999999999753221110 011667777655554 4678
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011492 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
++.++||||..++ ...+...+..+|++++|+|+...+..+++..
T Consensus 81 ~~~liDtPGh~~f--------------~~~~~~~~~~aD~allVVda~~G~~~qt~~~ 124 (406)
T TIGR02034 81 KFIVADTPGHEQY--------------TRNMATGASTADLAVLLVDARKGVLEQTRRH 124 (406)
T ss_pred EEEEEeCCCHHHH--------------HHHHHHHHhhCCEEEEEEECCCCCccccHHH
Confidence 9999999996321 2234456789999999999998887766543
No 500
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.53 E-value=2.7e-07 Score=82.28 Aligned_cols=85 Identities=25% Similarity=0.314 Sum_probs=52.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec-CCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011492 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~-~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
+|+++|.+|+|||||+|++.+..... ..+.+... ....... .....+.+|||||.... .. ..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~---~~ 64 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPE-ITIPADVTPERVPTTIVDTSSRPQD-----------RA---NL 64 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccc-eEeeeeecCCeEEEEEEeCCCchhh-----------hH---HH
Confidence 68999999999999999999865322 22222111 1111111 12346789999997431 11 12
Q ss_pred HHHhhcCcEEEEEEeCcccccHH
Q 011492 452 FRAIRRSDVVALVIEAMACITEQ 474 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~ 474 (484)
...++.+|++++|+|+..+-+-+
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~ 87 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLE 87 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHH
Confidence 23358899999999987644433
Done!