BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011493
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J3N|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
pdb|1J3N|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl-Carrier Protein)
Synthase Ii From Thermus Thermophilus Hb8
Length = 408
Score = 307 bits (786), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/395 (41%), Positives = 241/395 (61%), Gaps = 17/395 (4%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
FH L G + + I FD S + + ++ K ++ D+++ YAL+A
Sbjct: 22 FHKAQLAGKSGVRPITRFDASALPVRI--AAEVDVDPGAYLDRKELRRLDRFVQYALIAA 79
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEA-----IKVSYKKMSPFCI 204
+ AL DAG+ + +LD R G ++G+ +GG+ +EA ++ ++SPF I
Sbjct: 80 QLALEDAGLKPE---DLDPERVGTLVGTGIGGMET----WEAQSRVFLERGPNRISPFFI 132
Query: 205 PYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAI 264
P + N ASA +AM G+TGPS ++ TACA+ ++ +A + G+ D++L GG++ AI
Sbjct: 133 PMMIANMASAHIAMRYGFTGPSSTVVTACATGADALGSALRMIQLGEADLVLAGGTEAAI 192
Query: 265 IPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIY 324
P I LS RN EP KA+RP+ RDGFVMG+GAGVL+LE E AKKRGA IY
Sbjct: 193 TPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAGVLVLEAYEHAKKRGARIY 252
Query: 325 AEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLRE 384
AE++ S DA+H+T PHPEG G M +AL +G+A E V YINAH ST +GD E
Sbjct: 253 AELVGFGRSADAHHITEPHPEGKGAALAMARALKDAGIAPEQVGYINAHGTSTPVGDRAE 312
Query: 385 YQAVIRCFGKNPE-LRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKD 443
A+ R FG + + L ++STKS+IGHLLGA+G EA+AT++A+ G I P +NLE+PD +
Sbjct: 313 VLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATVQALYHGVIPPTINLEDPDPE 372
Query: 444 VDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
+D + P++ ++D A+SNS+ FGGHN+ + F
Sbjct: 373 LDLDFVPEPREAKVDY--ALSNSFAFGGHNAVLAF 405
>pdb|1E5M|A Chain A, Beta Ketoacyl Acyl Carrier Protein Synthase Ii (Kasii)
From Synechocystis Sp
Length = 416
Score = 285 bits (729), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 161/395 (40%), Positives = 233/395 (58%), Gaps = 7/395 (1%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
+ L+EG I I FD S+ + +K ++ K K+ D++ +A+ A
Sbjct: 27 YWQGLMEGRNGIGPITRFDASDQACRFGG-EVKDFDATQFLDRKEAKRMDRFCHFAVCAS 85
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAI-KVSYKKMSPFCIPYSL 208
++A+ DA + V EL+ GV+IG+ +GGL VL D + + SPF IP +
Sbjct: 86 QQAINDAKL---VINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMI 142
Query: 209 TNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAG 268
N AS A++LG GP+ TACA+ + +I +A L G M+CGG++ AI P
Sbjct: 143 ANMASGLTAINLGAKGPNNCTVTACAAGSNAIGDAFRLVQNGYAKAMICGGTEAAITPLS 202
Query: 269 IAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEIL 328
AG + LS RN +P A+RP+D DRDGFVMG+G+G+L+LEELE A RGA IY E++
Sbjct: 203 YAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSGILILEELESALARGAKIYGEMV 262
Query: 329 AGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAV 388
+++CDAYH+TAP P+G G + AL SG+ E V+YINAH ST D+ E +A+
Sbjct: 263 GYAMTCDAYHITAPVPDGRGATRAIAWALKDSGLKPEMVSYINAHGTSTPANDVTETRAI 322
Query: 389 IRCFGKNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAK 447
+ G + + ++STKS+ GHLLG SG EAVAT+ AI + P +NLENPD + D
Sbjct: 323 KQALGNHAYNIAVSSTKSMTGHLLGGSGGIEAVATVMAIAEDKVPPTINLENPDPECDLD 382
Query: 448 VLVGPKKERLDIKVAMSNSYGFGGHNSSILFAPYK 482
+ G + L + VA+SNS+GFGGHN ++ F Y+
Sbjct: 383 YVPG-QSRALIVDVALSNSFGFGGHNVTLAFKKYQ 416
>pdb|2GQD|A Chain A, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
pdb|2GQD|B Chain B, The Crystal Structure Of B-Ketoacyl-Acp Synthase Ii (Fabf)
From Staphylococcus Aureus
Length = 437
Score = 264 bits (675), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 230/392 (58%), Gaps = 8/392 (2%)
Query: 93 NLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKA 152
N L+GV I I D +S L LK+ + + + K ++ D++ YA+VA ++A
Sbjct: 51 NALKGVNGIDKITRIDTEPYSVHLAG-ELKNFNIEDHIDKKEARRMDRFTQYAIVAAREA 109
Query: 153 LADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGF-EAIKVSYKKMSPFCIPYSLTNT 211
+ DA + E R GV IGS +GG+ + + +++SPF +P + +
Sbjct: 110 VKDAQLDIN---ENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDM 166
Query: 212 ASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAG 271
A+ +++DLG GP+ + TACA+ SI A + +GD D M+ GG++ I IAG
Sbjct: 167 ATGQVSIDLGAKGPNGATVTACATGTNSIGEAFKIVQRGDADAMITGGTEAPITHMAIAG 226
Query: 272 LVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGS 331
A LS N + A RP+ RDGFVMG+GAG+L++E LE A+ RGA+IYAEI+
Sbjct: 227 FSASRALST-NDDIETACRPFQEGRDGFVMGEGAGILVIESLESAQARGANIYAEIVGYG 285
Query: 332 LSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRC 391
+ DAYH+TAP PEG G M+ A+ +G+ +DV Y+NAH ST +GDL E +A+
Sbjct: 286 TTGDAYHITAPAPEGEGGSRAMQAAMDDAGIEPKDVQYLNAHGTSTPVGDLNEVKAIKNT 345
Query: 392 FGKNPE-LRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLV 450
FG+ + L+++STKS+ GHLLGA+G EA+ + +I+ + P ++ PD + D + V
Sbjct: 346 FGEAAKHLKVSSTKSMTGHLLGATGGIEAIFSALSIKDSKVAPTIHAVTPDPECDLDI-V 404
Query: 451 GPKKERLDIKVAMSNSYGFGGHNSSILFAPYK 482
+ + LDI AMSNS GFGGHN+ ++F ++
Sbjct: 405 PNEAQDLDITYAMSNSLGFGGHNAVLVFKKFE 436
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 149/392 (38%), Positives = 231/392 (58%), Gaps = 13/392 (3%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
F +L G I I FD S+F + ++ D + K + D Y +YAL A
Sbjct: 43 FWNSLATGKIGIGGITKFDHSDFDVH-NAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAA 101
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYK---KMSPFCIPY 206
++A+ A + + L++ R GVI+ S +GG+ + D + +++ K ++ P +P
Sbjct: 102 QEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIED--QVLRLHEKGPKRVKPMTLPK 156
Query: 207 SLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIP 266
+L N AS +AM G G SINTAC+SSN +I +A G D+ML GG++ +I P
Sbjct: 157 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 216
Query: 267 AGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAE 326
IAG A LS +PT+A+ P+D DR+GFVMG+G+G+L+LE LE A+KRGA+I AE
Sbjct: 217 FAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAE 275
Query: 327 ILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQ 386
++ +CDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NAH ST + E
Sbjct: 276 VVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESG 335
Query: 387 AVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA 446
A++ GK E+ ++STKS GHLLGA+G EA+ TI+A++ ++ ++A
Sbjct: 336 AIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEA 393
Query: 447 KVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
V+ G E+ +I A+SN++GFGGHN+ + F
Sbjct: 394 NVVYGQGLEK-EIPYAISNTFGFGGHNAVLAF 424
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 254 bits (649), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 224/386 (58%), Gaps = 4/386 (1%)
Query: 94 LLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKAL 153
LL G + IS I FD S ++T + +K + + +S K +K D ++ Y +VAG +A+
Sbjct: 27 LLAGQSGISLIDHFDTSAYATKFAGL-VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAM 85
Query: 154 ADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTAS 213
D+G+ +++ E R I G + + + +K+SPF +P ++ N +
Sbjct: 86 QDSGL--EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 143
Query: 214 AALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLV 273
L + G GPS SI TAC S ++I +AA + GD D+M+ GG++ A P G+ G
Sbjct: 144 GHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFG 203
Query: 274 ACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLS 333
A LS RN P A+RPWD +RDGFV+G GAG+L+LEE E AKKRGA IYAE++ +S
Sbjct: 204 AARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS 263
Query: 334 CDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG 393
DAYH+T+P G G M AL +G+ + Y+NAH ST GD E QAV FG
Sbjct: 264 SDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFG 323
Query: 394 KNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGP 452
+ + ++STKS+ GHLLGA+G E++ +I A++ + P +NL+NPD+ D +
Sbjct: 324 EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHE 383
Query: 453 KKERLDIKVAMSNSYGFGGHNSSILF 478
++ ++ + NS+GFGG N S++F
Sbjct: 384 ARQVSGMEYTLCNSFGFGGTNGSLIF 409
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 254 bits (649), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 224/386 (58%), Gaps = 4/386 (1%)
Query: 94 LLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKAL 153
LL G + IS I FD S ++T + +K + + +S K +K D ++ Y +VAG +A+
Sbjct: 42 LLAGQSGISLIDHFDTSAYATKFAGL-VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAM 100
Query: 154 ADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTAS 213
D+G+ +++ E R I G + + + +K+SPF +P ++ N +
Sbjct: 101 QDSGL--EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 158
Query: 214 AALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLV 273
L + G GPS SI TAC S ++I +AA + GD D+M+ GG++ A P G+ G
Sbjct: 159 GHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFG 218
Query: 274 ACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLS 333
A LS RN P A+RPWD +RDGFV+G GAG+L+LEE E AKKRGA IYAE++ +S
Sbjct: 219 AARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS 278
Query: 334 CDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG 393
DAYH+T+P G G M AL +G+ + Y+NAH ST GD E QAV FG
Sbjct: 279 SDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFG 338
Query: 394 KNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGP 452
+ + ++STKS+ GHLLGA+G E++ +I A++ + P +NL+NPD+ D +
Sbjct: 339 EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHE 398
Query: 453 KKERLDIKVAMSNSYGFGGHNSSILF 478
++ ++ + NS+GFGG N S++F
Sbjct: 399 ARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 253 bits (647), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 229/392 (58%), Gaps = 13/392 (3%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
F +L G I I FD S+F + ++ D + K + D Y +YAL A
Sbjct: 44 FWNSLATGKIGIGGITKFDHSDFDVH-NAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAA 102
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYK---KMSPFCIPY 206
++A+ A + + L++ R GVI+ S +GG+ + D + +++ K ++ P +P
Sbjct: 103 QEAVNHANLDVEA---LNRDRFGVIVASGIGGIKEIED--QVLRLHEKGPKRVKPMTLPK 157
Query: 207 SLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIP 266
+L N AS +AM G G SINTAC+SSN +I +A G D+ML GG++ +I P
Sbjct: 158 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 217
Query: 267 AGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAE 326
IAG A LS +PT+A+ P+D DR+GFVMG+G+G+L+LE LE A+KRGA+I AE
Sbjct: 218 FAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAE 276
Query: 327 ILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQ 386
++ +CDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NA ST + E
Sbjct: 277 VVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAAGTSTPANEKGESG 336
Query: 387 AVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA 446
A++ GK E+ ++STKS GHLLGA+G EA+ TI+A++ ++ ++A
Sbjct: 337 AIVAVLGK--EVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEA 394
Query: 447 KVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
V+ E+ +I A+SN++GFGGHN+ + F
Sbjct: 395 NVVYAQGLEK-EIPYAISNTFGFGGHNAVLAF 425
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 228/392 (58%), Gaps = 13/392 (3%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
F +L G I I FD S+F + ++ D + K + D Y +YAL A
Sbjct: 43 FWNSLATGKIGIGGITKFDHSDFDVH-NAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAA 101
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYK---KMSPFCIPY 206
++A+ A + L++ R GVI+ S +GG+ + D + +++ K ++ P +P
Sbjct: 102 QEAVNHANLD---VAALNRDRFGVIVASGIGGIKEIED--QVLRLHEKGPKRVKPMTLPK 156
Query: 207 SLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIP 266
+L N AS +AM G G SINTAC+SSN +I +A G D+ML GG++ +I P
Sbjct: 157 ALPNMASGNVAMRFGANGVCKSINTACSSSNDAIGDAFRSIKFGFQDVMLVGGTEASITP 216
Query: 267 AGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAE 326
IAG A LS +PT+A+ P+D DR+GFVMG+G+G+L+LE LE A+KRGA+I AE
Sbjct: 217 FAIAGFQALTALST-TEDPTRASIPFDKDRNGFVMGEGSGMLVLESLEHAEKRGATILAE 275
Query: 327 ILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQ 386
++ +CDAYH+T+PHPEG G + ++ AL ++ ++ E V Y+NAH ST + E
Sbjct: 276 VVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAEISPEQVAYVNAHGTSTPANEKGESG 335
Query: 387 AVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA 446
A++ GK + ++STKS GHLLGA+G EA+ TI+A++ ++ ++A
Sbjct: 336 AIVAVLGK--AVPVSSTKSFTGHLLGAAGAVEAIVTIEAMRHNFVPMTAGTSEVSDYIEA 393
Query: 447 KVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
V+ G + +I A+SN++GFGGHN+ + F
Sbjct: 394 NVVYGQGLAK-EIPYAISNTFGFGGHNAVLAF 424
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 251 bits (642), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 4/386 (1%)
Query: 94 LLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKAL 153
LL G + IS I FD S ++T + +K + + +S K +K D ++ Y +VAG +A+
Sbjct: 42 LLAGQSGISLIDHFDTSAYATKFAGL-VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAM 100
Query: 154 ADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTAS 213
D+G+ +++ E R I G + + + +K+SPF +P ++ N +
Sbjct: 101 QDSGL--EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 158
Query: 214 AALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLV 273
L + G GPS SI TAC S ++I +AA + GD D+M+ GG++ A P G+ G
Sbjct: 159 GHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFG 218
Query: 274 ACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLS 333
A LS RN P A+RPWD +RDGFV+G GAG+L+LEE E AKKRGA IYAE++ +S
Sbjct: 219 AARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS 278
Query: 334 CDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG 393
DAYH+T+P G G M AL +G+ + Y+NAH ST GD E QAV FG
Sbjct: 279 SDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFG 338
Query: 394 KNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGP 452
+ + ++ST S+ GHLLGA+G E++ +I A++ + P +NL+NPD+ D +
Sbjct: 339 EAASRVLVSSTASMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHE 398
Query: 453 KKERLDIKVAMSNSYGFGGHNSSILF 478
++ ++ + NS+GFGG N S++F
Sbjct: 399 ARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|3HNZ|A Chain A, Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin
pdb|3HO2|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
pdb|3HO9|A Chain A, Structure Of E.Coli Fabf(C163a) In Complex With Platencin
A1
pdb|3I8P|A Chain A, Crystal Structure Of E. Coli Fabf(C163a) In Complex With
Platensimycin A1
Length = 427
Score = 250 bits (639), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 4/386 (1%)
Query: 94 LLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKAL 153
LL G + IS I FD S ++T + +K + + +S K +K D ++ Y +VAG +A+
Sbjct: 42 LLAGQSGISLIDHFDTSAYATKFAGL-VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAM 100
Query: 154 ADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTAS 213
D+G+ +++ E R I G + + + +K+SPF +P ++ N +
Sbjct: 101 QDSGL--EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 158
Query: 214 AALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLV 273
L + G GPS SI TA S ++I +AA + GD D+M+ GG++ A P G+ G
Sbjct: 159 GHLTIMYGLRGPSISIATAATSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFG 218
Query: 274 ACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLS 333
A LS RN P A+RPWD +RDGFV+G GAG+L+LEE E AKKRGA IYAE++ +S
Sbjct: 219 AARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS 278
Query: 334 CDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG 393
DAYH+T+P G G M AL +G+ + Y+NAH ST GD E QAV FG
Sbjct: 279 SDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFG 338
Query: 394 KNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGP 452
+ + ++STKS+ GHLLGA+G E++ +I A++ + P +NL+NPD+ D +
Sbjct: 339 EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHE 398
Query: 453 KKERLDIKVAMSNSYGFGGHNSSILF 478
++ ++ + NS+GFGG N S++F
Sbjct: 399 ARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|2GFV|A Chain A, Structure Of E. Coli Fabf (Kasii) C163q Mutant
pdb|2GFX|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Platensimycin
pdb|3G0Y|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydroplatensimycin
pdb|3G11|A Chain A, Structure Of E. Coli Fabf(C163q) In Complex With
Dihydrophenyl Platensimycin
Length = 427
Score = 250 bits (638), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/386 (38%), Positives = 223/386 (57%), Gaps = 4/386 (1%)
Query: 94 LLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKAL 153
LL G + IS I FD S ++T + +K + + +S K +K D ++ Y +VAG +A+
Sbjct: 42 LLAGQSGISLIDHFDTSAYATKFAGL-VKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAM 100
Query: 154 ADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTAS 213
D+G+ +++ E R I G + + + +K+SPF +P ++ N +
Sbjct: 101 QDSGL--EITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVA 158
Query: 214 AALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLV 273
L + G GPS SI TA S ++I +AA + GD D+M+ GG++ A P G+ G
Sbjct: 159 GHLTIMYGLRGPSISIATAQTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFG 218
Query: 274 ACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLS 333
A LS RN P A+RPWD +RDGFV+G GAG+L+LEE E AKKRGA IYAE++ +S
Sbjct: 219 AARALSTRNDNPQAASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMS 278
Query: 334 CDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG 393
DAYH+T+P G G M AL +G+ + Y+NAH ST GD E QAV FG
Sbjct: 279 SDAYHMTSPPENGAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFG 338
Query: 394 KNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGP 452
+ + ++STKS+ GHLLGA+G E++ +I A++ + P +NL+NPD+ D +
Sbjct: 339 EAASRVLVSSTKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHE 398
Query: 453 KKERLDIKVAMSNSYGFGGHNSSILF 478
++ ++ + NS+GFGG N S++F
Sbjct: 399 ARQVSGMEYTLCNSFGFGGTNGSLIF 424
>pdb|4DDO|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis
Length = 451
Score = 246 bits (628), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/351 (39%), Positives = 210/351 (59%), Gaps = 10/351 (2%)
Query: 136 KKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVS 195
+K D+++ A+VA +ALA+AG + E + R ++ S +GG L+ EA+++
Sbjct: 97 RKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFPGLA---EAVRIG 151
Query: 196 ----YKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGD 251
+++SPF IP+ L+N A+ +++ + GP TACA+S +I +A + G+
Sbjct: 152 ETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTACAASVQAIGDAMRMIRTGE 211
Query: 252 TDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSE-PTKAARPWDADRDGFVMGKGAGVLLL 310
D++L GG++ A + G A LS SE P +A+RP+D DRDGFVMG+GA ++++
Sbjct: 212 ADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVV 271
Query: 311 EELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYI 370
E L+ A RGA AEI+ + DAYH+TA +G G + M+ AL VA E V+Y+
Sbjct: 272 ESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYV 331
Query: 371 NAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGW 430
NAHA ST +GD E +A+ FG ++STKS GHLLGA+G EA +I A++ G
Sbjct: 332 NAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGV 391
Query: 431 IHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFAPY 481
+ LNLE+PD D L+GP + +++A+SN +GFGG N+S+LF Y
Sbjct: 392 LPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRRY 442
>pdb|1W0I|A Chain A, Arabidopsis Thaliana Mitochondrial Kas
pdb|1W0I|B Chain B, Arabidopsis Thaliana Mitochondrial Kas
pdb|2IX4|A Chain A, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
pdb|2IX4|B Chain B, Arabidopsis Thaliana Mitochondrial Beta-Ketoacyl Acp
Synthase Hexanoic Acid Complex
Length = 431
Score = 243 bits (619), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 125/287 (43%), Positives = 185/287 (64%), Gaps = 4/287 (1%)
Query: 197 KKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIML 256
+++SPF IP L N AS ++M G+ GP+++ TACA+ +SI +A + GD D+M+
Sbjct: 143 RRLSPFFIPKILVNMASGHVSMKYGFQGPNHAAVTACATGAHSIGDATRMIQFGDADVMV 202
Query: 257 CGGSDGAIIPAGIAGLVACNVLSQR-NSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQ 315
GG++ +I +AG LS + NS P +A+RP+D DRDGFV+G+G+GV++LEE E
Sbjct: 203 AGGTESSIDALSVAGFSRSRALSTKFNSSPQEASRPFDCDRDGFVIGEGSGVIVLEEYEH 262
Query: 316 AKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAP 375
AK+RGA IYAE+ +S DA+H+T P +G G V M +AL QSG+ ++Y+NAHA
Sbjct: 263 AKRRGAKIYAELCGYGMSGDAHHITQPPEDGKGAVLAMTRALRQSGLCPNQIDYVNAHAT 322
Query: 376 STRLGDLREYQAVIRCFGKNP---ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIH 432
ST +GD E +A+ F ++ L +STK GHLLGA+G EA+ +I AI G
Sbjct: 323 STPIGDAVEARAIKTVFSEHATSGTLAFSSTKGATGHLLGAAGAVEAIFSILAIHHGVAP 382
Query: 433 PNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFA 479
LN++NPD D + + +++ ++ AMSNS+GFGG N+S+LFA
Sbjct: 383 MTLNVKNPDPIFDKRFMPLTTSKKMLVRTAMSNSFGFGGTNASLLFA 429
>pdb|4F32|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
pdb|4F32|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Ii From Burkholderia Vietnamiensis In Complex
With Platencin
Length = 451
Score = 242 bits (617), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/351 (38%), Positives = 209/351 (59%), Gaps = 10/351 (2%)
Query: 136 KKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVS 195
+K D+++ A+VA +ALA+AG + E + R ++ S +GG L+ EA+++
Sbjct: 97 RKMDRFIQMAMVAADEALAEAGWAPEA--EQQRERTATVVASGIGGFPGLA---EAVRIG 151
Query: 196 ----YKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGD 251
+++SPF IP+ L+N A+ +++ + GP TA A+S +I +A + G+
Sbjct: 152 ETRGVRRLSPFTIPFFLSNLAAGQISIKHRFRGPLGCPVTAXAASVQAIGDAMRMIRTGE 211
Query: 252 TDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSE-PTKAARPWDADRDGFVMGKGAGVLLL 310
D++L GG++ A + G A LS SE P +A+RP+D DRDGFVMG+GA ++++
Sbjct: 212 ADVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDRDGFVMGEGAAMVVV 271
Query: 311 EELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYI 370
E L+ A RGA AEI+ + DAYH+TA +G G + M+ AL VA E V+Y+
Sbjct: 272 ESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGDVAPEQVDYV 331
Query: 371 NAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGW 430
NAHA ST +GD E +A+ FG ++STKS GHLLGA+G EA +I A++ G
Sbjct: 332 NAHATSTPVGDAGEIEALKTVFGVGAGPAISSTKSATGHLLGAAGAIEAAFSILALRDGV 391
Query: 431 IHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFAPY 481
+ LNLE+PD D L+GP + +++A+SN +GFGG N+S+LF Y
Sbjct: 392 LPGTLNLEHPDPAADGLDLIGPAARHVPVEIALSNGFGFGGVNASVLFRRY 442
>pdb|3O04|A Chain A, Crystal Structure Of The Beta-Keto-Acyl Carrier Protein
Synthase Ii (Lmo2201) From Listeria Monocytogenes
Length = 413
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 141/412 (34%), Positives = 228/412 (55%), Gaps = 8/412 (1%)
Query: 69 ERRIXXXXXXXXXXXXDDAHLFHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDG 128
+RR+ +DA N +GV ++ + +F + LK +
Sbjct: 3 KRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKXTRLNPDDFPVKI-AAELKDFDVEK 61
Query: 129 WVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDG 188
++ K +K D++ YA+ + + A+ D+G+ V + + R GV IGS +GG
Sbjct: 62 YLEKKEARKXDRFTHYAIASAEXAVQDSGL---VIDDSNANRVGVWIGSGIGGXETFETQ 118
Query: 189 FEA-IKVSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLR 247
+E + ++++SPF +P + + S +++ G G + + TACA++ SI +A +
Sbjct: 119 YEIFLNRGHRRVSPFFVPXXIPDXGSGQVSIRFGAKGINSTTVTACATATNSIGDAFKVI 178
Query: 248 IKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGV 307
+GD D + GG++ I +AG A LS N +P A RP+D DRDGF++G+GAG+
Sbjct: 179 ERGDADAXITGGAEAPITKXSLAGFTANKALSL-NPDPETACRPFDKDRDGFIIGEGAGI 237
Query: 308 LLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDV 367
++LEE E AK RGA IYAEI+ + DAYH+TAP P G G + A+ +G+ + V
Sbjct: 238 VILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAXKXAIDDAGLTPDKV 297
Query: 368 NYINAHAPSTRLGDLREYQAVIRCFGKN-PELRMNSTKSLIGHLLGASGTAEAVATIKAI 426
+YINAH ST D E QA+ FG++ +L ++STKS GH LGASG EA+ + I
Sbjct: 298 DYINAHGTSTPYNDEYETQAIKTVFGEHAKKLAISSTKSXTGHTLGASGGIEAIFALLTI 357
Query: 427 QTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
+ I P ++L+N D+ D + +E ++ V +SNS+GFGGHN++++F
Sbjct: 358 RDNIIAPTIHLKNQDEVCDLDYVPNEARE-ANVNVVISNSFGFGGHNATLVF 408
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 236 bits (602), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 219/361 (60%), Gaps = 5/361 (1%)
Query: 123 SLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGL 182
+ + D + PK +K D +++YA+ A +AL DAG + + E R +I G
Sbjct: 69 TFNPDLHMDPKEQRKVDPFIVYAVGAADQALDDAGWHPE-NDEDQVRTGVLIGSGIGGIE 127
Query: 183 HVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILN 242
++ G+ +++SPF IP L N AS +++ GP++S+ TACA+ ++I +
Sbjct: 128 GIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHKLRGPNHSVVTACATGTHAIGD 187
Query: 243 AANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLS-QRNSEPTKAARPWDADRDGFVM 301
AA L GD D+M+ GG++ + +AG AC LS +RN +PT A+RP+D DRDGFVM
Sbjct: 188 AARLIAFGDADVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDRDGFVM 247
Query: 302 GKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSG 361
G+GAG+++LEELE A RGA IYAE++ +S DA+H+TAP G G CM AL ++G
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSGDAFHITAPTESGEGAQRCMVAALKRAG 307
Query: 362 VAKEDVNYINAHAPSTRLGDLREYQAVIRCFGK-NPELRMNSTKSLIGHLLGASGTAEAV 420
+ ++++YINAH ST + D E AV R G+ ++ M+STKS IGHLLGA+G AEAV
Sbjct: 308 IVPDEIDYINAHGTST-MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAV 366
Query: 421 ATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFAP 480
+ AI+ LNL+NP ++ +ER I VA+SNS+GFGG N+S++
Sbjct: 367 FSTLAIRDNIAPATLNLDNPAAQTRIDLVPHKPRER-KIDVALSNSFGFGGTNASLVLRR 425
Query: 481 Y 481
Y
Sbjct: 426 Y 426
>pdb|2IWY|A Chain A, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWY|B Chain B, Human Mitochondrial Beta-ketoacyl Acp Synthase
pdb|2IWZ|A Chain A, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
pdb|2IWZ|B Chain B, Human Mitochondrial Beta-Ketoacyl Acp Synthase Complexed
With Hexanoic Acid
Length = 438
Score = 226 bits (576), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 147/401 (36%), Positives = 216/401 (53%), Gaps = 12/401 (2%)
Query: 88 HLFHTNLLEGVTAISDIQG-----FDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYM 142
HL L+ G + I + G CS + + + + +VS K
Sbjct: 39 HLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPT 98
Query: 143 IYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV-SYKKMSP 201
I A+ A + A+ D+G Q E D+ GV IG M L V+S+ + Y K+SP
Sbjct: 99 IMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSP 156
Query: 202 FCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
F +P L N A+ +++ GP+++++TAC + +++ ++ GD D+M+ GG+D
Sbjct: 157 FFVPKILVNMAAGQVSIRYKLKGPNHAVSTACTTGAHAVGDSFRFIAHGDADVMVAGGTD 216
Query: 262 GAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGA 321
I P +AG LS NS+P A RP+ RDGFVMG+GA VL+LEE E A +R A
Sbjct: 217 SCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRA 275
Query: 322 SIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGD 381
IYAE+L LS DA H+TAP PEG G + CM AL +GV E+++YINAHA ST LGD
Sbjct: 276 RIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGD 335
Query: 382 LREYQAVIRCFGKNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLE-- 438
E +A+ F + L ++STK GHLLGA+G EA T A + P LNL+
Sbjct: 336 AAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCS 395
Query: 439 NPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFA 479
P+ D++ L + + + ++NS+GFGG N+++ A
Sbjct: 396 EPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 436
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 226 bits (575), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/288 (46%), Positives = 186/288 (64%), Gaps = 6/288 (2%)
Query: 197 KKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIML 256
+++SPF IP L N AS +++ G GP++S+ TAC++ ++I +AA L GD D+ML
Sbjct: 138 RRISPFFIPGRLINLASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDADVML 197
Query: 257 CGGSDGAIIPAGIAGLVACNVLSQ-RNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQ 315
GG++ I +AG AC LS RN +P +A+RP+D DRDGFVMG+GA +++LEELE
Sbjct: 198 AGGTESPINRISLAGFSACRALSTCRNDDPERASRPYDVDRDGFVMGEGAAIVVLEELEH 257
Query: 316 AKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAP 375
AKKRGA IYAEI+ LS DAYH+TAP G G M AL ++ V +++YINAH
Sbjct: 258 AKKRGARIYAEIIGYGLSGDAYHITAPSESGEGAQRSMMAALKRAQVNVSELDYINAHGT 317
Query: 376 STRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPN 434
ST + D+ E AV R G P++ M+STKS IGHLLGA+G AEA+ + AI+
Sbjct: 318 ST-MADVIELAAVERVLGYYAPQVSMSSTKSSIGHLLGAAGAAEAIFCVLAIRDNIAPAT 376
Query: 435 LNLENPDKDVDAKVLVGPKKER-LDIKVAMSNSYGFGGHNSSILFAPY 481
LNLENP ++ K+ + P K R I +SNS+GFGG N+S++ +
Sbjct: 377 LNLENP--SIETKIDLVPHKPRERKIDTVLSNSFGFGGTNASLVMRRF 422
>pdb|2C9H|A Chain A, Structure Of Mitochondrial Beta-Ketoacyl Synthase
Length = 444
Score = 221 bits (564), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 215/401 (53%), Gaps = 12/401 (2%)
Query: 88 HLFHTNLLEGVTAISDIQG-----FDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYM 142
HL L+ G + I + G CS + + + + +VS K
Sbjct: 45 HLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPT 104
Query: 143 IYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV-SYKKMSP 201
I A+ A + A+ D+G Q E D+ GV IG M L V+S+ + Y K+SP
Sbjct: 105 IMAIGAAELAMKDSGWHPQ--SEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSP 162
Query: 202 FCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
F +P L N A+ +++ GP+++++TA + +++ ++ GD D+M+ GG+D
Sbjct: 163 FFVPKILVNMAAGQVSIRYKLKGPNHAVSTAXTTGAHAVGDSFRFIAHGDADVMVAGGTD 222
Query: 262 GAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGA 321
I P +AG LS NS+P A RP+ RDGFVMG+GA VL+LEE E A +R A
Sbjct: 223 SCISPLSLAGFSRARALST-NSDPKLACRPFHPKRDGFVMGEGAAVLVLEEYEHAVQRRA 281
Query: 322 SIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGD 381
IYAE+L LS DA H+TAP PEG G + CM AL +GV E+++YINAHA ST LGD
Sbjct: 282 RIYAEVLGYGLSGDAGHITAPDPEGEGALRCMAAALKDAGVQPEEISYINAHATSTPLGD 341
Query: 382 LREYQAVIRCFGKNP-ELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLE-- 438
E +A+ F + L ++STK GHLLGA+G EA T A + P LNL+
Sbjct: 342 AAENKAIKHLFKDHAYALAVSSTKGATGHLLGAAGAVEAAFTTLACYYQKLPPTLNLDCS 401
Query: 439 NPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFA 479
P+ D++ L + + + ++NS+GFGG N+++ A
Sbjct: 402 EPEFDLNYVPLKAQEWKTEKRFIGLTNSFGFGGTNATLCIA 442
>pdb|2WGD|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
pdb|2WGE|A Chain A, Crystal Structure Of Kasa Of Mycobacterium Tuberculosis
With Bound Tlm
Length = 416
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 184/320 (57%), Gaps = 4/320 (1%)
Query: 163 SGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVS-YKKMSPFCIPYSLTNTASAALAMDLG 221
S E+D R V++G+ +GG + + ++ + +K+SP + + N A+A + + LG
Sbjct: 100 SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLG 159
Query: 222 WTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQR 281
+ +AC+S + +I +A + GD D+ +CGG +G I IA +S R
Sbjct: 160 ARAGVMTPVSACSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR 219
Query: 282 NSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTA 341
N EP +A+RP+D DRDGFV G+ ++L+E E AK RGA A +L ++ DA+H+ A
Sbjct: 220 NDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVA 279
Query: 342 PHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMN 401
P +GV M ++L +G++ D++++NAH +T +GD E A IR G + + +
Sbjct: 280 PAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANA-IRVAGCD-QAAVY 337
Query: 402 STKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKV 461
+ KS +GH +GA G E+V T+ ++ G I P LN E PD ++D V+ G + D +
Sbjct: 338 APKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRYG-DYRY 396
Query: 462 AMSNSYGFGGHNSSILFAPY 481
A++NS+GFGGHN ++ F Y
Sbjct: 397 AVNNSFGFGGHNVALAFGRY 416
>pdb|2WGF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGF|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant
pdb|2WGG|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
pdb|2WGG|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis C171q Kasa
Variant With Bound Tlm
Length = 416
Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 183/320 (57%), Gaps = 4/320 (1%)
Query: 163 SGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVS-YKKMSPFCIPYSLTNTASAALAMDLG 221
S E+D R V++G+ +GG + + ++ + +K+SP + + N A+A + + LG
Sbjct: 100 SPEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLG 159
Query: 222 WTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQR 281
+ +A +S + +I +A + GD D+ +CGG +G I IA +S R
Sbjct: 160 ARAGVMTPVSAQSSGSEAIAHAWRQIVMGDADVAVCGGVEGPIEALPIAAFSMMRAMSTR 219
Query: 282 NSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTA 341
N EP +A+RP+D DRDGFV G+ ++L+E E AK RGA A +L ++ DA+H+ A
Sbjct: 220 NDEPERASRPFDKDRDGFVFGEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVA 279
Query: 342 PHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMN 401
P +GV M ++L +G++ D++++NAH +T +GD E A IR G + + +
Sbjct: 280 PAADGVRAGRAMTRSLELAGLSPADIDHVNAHGTATPIGDAAEANA-IRVAGCD-QAAVY 337
Query: 402 STKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKV 461
+ KS +GH +GA G E+V T+ ++ G I P LN E PD ++D V+ G + D +
Sbjct: 338 APKSALGHSIGAVGALESVLTVLTLRDGVIPPTLNYETPDPEIDLDVVAGEPRYG-DYRY 396
Query: 462 AMSNSYGFGGHNSSILFAPY 481
A++NS+GFGGHN ++ F Y
Sbjct: 397 AVNNSFGFGGHNVALAFGRY 416
>pdb|3LRF|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis
pdb|3MQD|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis With Fol 0758, (1-Methyl-1h-Indazol-3-Yl)
Methanol
pdb|3U0E|A Chain A, Crystal Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis In Complex With Fragment 9320
Length = 428
Score = 200 bits (508), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 191/341 (56%), Gaps = 14/341 (4%)
Query: 147 VAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV-SYKKMSPFCIP 205
+A +A+ADAG+TE+ E+ R G+I+GS + D + + K++ PF +P
Sbjct: 98 IAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVP 154
Query: 206 YSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAII 265
++++TASA LA G +YSI++ACA+SN+ I NA + G D M GG +
Sbjct: 155 KAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDW 214
Query: 266 PAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYA 325
+ + S+ N P+ A+R +D +RDGFV+ GAGVL+LE+LE A RGA IY
Sbjct: 215 TLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYG 274
Query: 326 EILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREY 385
EI+ + D Y + AP EG + CM+ AL+ ++YIN HA ST GD E
Sbjct: 275 EIVGYGATSDGYDMVAPSGEGA--IRCMKMALS---TVTSKIDYINPHATSTPAGDAPEI 329
Query: 386 QAVIRCFGKN---PELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDK 442
+A+ + FG P + +TKSL GH LGA+G EA+ ++ +Q +I + ++E D
Sbjct: 330 EAIRQIFGAGDVCPPI--AATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDP 387
Query: 443 DVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFAPYKG 483
+V + + + + +SNS+GFGG N++++F Y+G
Sbjct: 388 AFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQG 428
>pdb|3U0F|A Chain A, The Structure Of Beta-Ketoacyl Synthase From Brucella
Melitensis Bound To The Fragment 7-Hydroxycoumarin
Length = 411
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 191/341 (56%), Gaps = 14/341 (4%)
Query: 147 VAGKKALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV-SYKKMSPFCIP 205
+A +A+ADAG+TE+ E+ R G+I+GS + D + + K++ PF +P
Sbjct: 81 IAMDQAIADAGLTEE---EVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVP 137
Query: 206 YSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAII 265
++++TASA LA G +YSI++ACA+SN+ I NA + G D M GG +
Sbjct: 138 KAMSSTASATLATFFKIKGINYSISSACATSNHCIGNAYEMIQYGKQDRMFAGGCEDLDW 197
Query: 266 PAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYA 325
+ + S+ N P+ A+R +D +RDGFV+ GAGVL+LE+LE A RGA IY
Sbjct: 198 TLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGAGVLVLEDLETALARGAKIYG 257
Query: 326 EILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREY 385
EI+ + D Y + AP EG + CM+ AL+ ++YIN HA ST GD E
Sbjct: 258 EIVGYGATSDGYDMVAPSGEGA--IRCMKMALS---TVTSKIDYINPHATSTPAGDAPEI 312
Query: 386 QAVIRCFGKN---PELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDK 442
+A+ + FG P + +TKSL GH LGA+G EA+ ++ +Q +I + ++E D
Sbjct: 313 EAIRQIFGAGDVCPPIA--ATKSLTGHSLGATGVQEAIYSLLMMQNNFICESAHIEELDP 370
Query: 443 DVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILFAPYKG 483
+V + + + + +SNS+GFGG N++++F Y+G
Sbjct: 371 AFADMPIVRKRIDNVQLNTVLSNSFGFGGTNATLVFQRYQG 411
>pdb|2GP6|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
pdb|2GP6|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl Acyl Carrier Protein Synthase Ii (Mtkasb)
Length = 434
Score = 196 bits (497), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/321 (35%), Positives = 179/321 (55%), Gaps = 4/321 (1%)
Query: 163 SGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV-SYKKMSPFCIPYSLTNTASAALAMDLG 221
S E+D R V IG+ +G L ++ ++ K +SP + + N A+AA+ ++
Sbjct: 116 SPEVDTNRLMVSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERH 175
Query: 222 WTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACN-VLSQ 280
+ +ACAS +I A + G+ D +CGG + I IAG V+S
Sbjct: 176 AKAGVMTPVSACASGAEAIARAWQQIVLGEADAAICGGVETRIEAVPIAGFAQMRIVMST 235
Query: 281 RNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLT 340
N +P A RP+D DRDGFV G+G +LL+E E AK RGA+I A I+ S++ D +H+
Sbjct: 236 NNDDPAGACRPFDRDRDGFVFGEGGALLLIETEEHAKARGANILARIMGASITSDGFHMV 295
Query: 341 APHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRM 400
AP P G + +A+ +G+A D++++NAHA T++GDL E +A+ G N +
Sbjct: 296 APDPNGERAGHAITRAIQLAGLAPGDIDHVNAHATGTQVGDLAEGRAINNALGGN-RPAV 354
Query: 401 NSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIK 460
+ KS +GH +GA G E++ T+ A++ I P LNL N D ++D V+ G + + +
Sbjct: 355 YAPKSALGHSVGAVGAVESILTVLALRDQVIPPTLNLVNLDPEIDLDVVAGEPRPG-NYR 413
Query: 461 VAMSNSYGFGGHNSSILFAPY 481
A++NS+GFGGHN +I F Y
Sbjct: 414 YAINNSFGFGGHNVAIAFGRY 434
>pdb|1DD8|A Chain A, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|B Chain B, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|C Chain C, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|1DD8|D Chain D, Crystal Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I From Escherichia Coli
pdb|2CDH|A Chain A, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|B Chain B, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|C Chain C, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|D Chain D, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|E Chain E, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution.
pdb|2CDH|F Chain F, Architecture Of The Thermomyces Lanuginosus Fungal Fatty
Acid Synthase At 5 Angstrom Resolution
Length = 406
Score = 188 bits (477), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 202/366 (55%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 51 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 107
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 108 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 167
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 227
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 228 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 283
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 284 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 340
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 341 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 399
Query: 477 LFAPYK 482
+ K
Sbjct: 400 VMRKLK 405
>pdb|1FJ4|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ4|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Thiolactomycin, Implications
For Drug Design
pdb|1FJ8|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1FJ8|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I In Complex With Cerulenin, Implications For
Drug Design
pdb|1G5X|A Chain A, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|B Chain B, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|C Chain C, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|1G5X|D Chain D, The Structure Of Beta-Ketoacyl-[acyl Carrier Protein]
Synthase I
pdb|2BUH|A Chain A, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|B Chain B, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|C Chain C, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUH|D Chain D, E. Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I,
120 K
pdb|2BUI|A Chain A, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|B Chain B, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|C Chain C, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2BUI|D Chain D, E.Coli Beta-Ketoacyl (Acyl Carrier Protein) Synthase I In
Complex With Octanoic Acid, 120k
pdb|2AQ7|A Chain A, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|B Chain B, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|C Chain C, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQ7|D Chain D, Structure-Activity Relationships At The 5-Posiiton Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherichia Coli
pdb|2AQB|A Chain A, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|B Chain B, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|C Chain C, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2AQB|D Chain D, Structure-Activity Relationships At The 5-Position Of
Thiolactomycin: An Intact 5(R)-Isoprene Unit Is Required
For Activity Against The Condensing Enzymes From
Mycobacterium Tuberculosis And Escherchia Coli
pdb|2VB7|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB7|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
pdb|2VB8|A Chain A, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|B Chain B, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB8|D Chain D, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli With Bound
Inhibitor Thiolactomycin
pdb|2VB9|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VB9|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli, Apo
Structure
pdb|2VBA|A Chain A, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|B Chain B, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|C Chain C, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
pdb|2VBA|D Chain D, Beta-ketoacyl-acp Synthase I (kas) From E. Coli With Bound
Amino-thiazole Inhibitor
Length = 406
Score = 187 bits (476), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 124/366 (33%), Positives = 202/366 (55%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 51 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 107
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 108 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 167
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 227
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 228 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 283
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 284 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 340
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 341 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 399
Query: 477 LFAPYK 482
+ K
Sbjct: 400 VMRKLK 405
>pdb|1H4F|A Chain A, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|B Chain B, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|C Chain C, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
pdb|1H4F|D Chain D, E. Coli Beta-Ketoacyl [acyl Carrier Protein] Synthase I
K328r
Length = 406
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 202/366 (55%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 51 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 107
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 108 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 167
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 227
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 228 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 283
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++T+++ GH LGA+G
Sbjct: 284 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATRAMTGHSLGAAGV 340
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 341 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 399
Query: 477 LFAPYK 482
+ K
Sbjct: 400 VMRKLK 405
>pdb|2BYW|A Chain A, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|B Chain B, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|C Chain C, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYW|D Chain D, Structure Of Escherichia Coli Beta-Ketoacyl (Acyl Carrier
Protein) Synthase I Lys328ala Mutant
pdb|2BYX|A Chain A, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|B Chain B, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|C Chain C, Kas I Lys328ala Mutant In Complex With Fatty Acid
pdb|2BYX|D Chain D, Kas I Lys328ala Mutant In Complex With Fatty Acid
Length = 418
Score = 185 bits (470), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 63 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 119
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 120 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 179
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 239
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 240 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 295
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++T ++ GH LGA+G
Sbjct: 296 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATAAMTGHSLGAAGV 352
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 353 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 411
Query: 477 LFAPYK 482
+ K
Sbjct: 412 VMRKLK 417
>pdb|2BYZ|A Chain A, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|B Chain B, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|C Chain C, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BYZ|D Chain D, Structure Of E. Coli Kas I H298q Mutant In Complex With
C12 Fatty Acid
pdb|2BZ4|A Chain A, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|B Chain B, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|C Chain C, Structure Of E. Coli Kas I H298q Mutant
pdb|2BZ4|D Chain D, Structure Of E. Coli Kas I H298q Mutant
Length = 418
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 63 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 119
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 120 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 179
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 239
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 240 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 295
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+ ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 296 AMHGV-DTPIDYLNSQGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 352
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 353 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 411
Query: 477 LFAPYK 482
+ K
Sbjct: 412 VMRKLK 417
>pdb|2BYY|A Chain A, E. Coli Kas I H298e Mutation
pdb|2BYY|B Chain B, E. Coli Kas I H298e Mutation
pdb|2BYY|C Chain C, E. Coli Kas I H298e Mutation
pdb|2BYY|D Chain D, E. Coli Kas I H298e Mutation
pdb|2BZ3|A Chain A, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|B Chain B, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|C Chain C, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
pdb|2BZ3|D Chain D, Structure Of E. Coli Kas I H298e Mutant In Complex With
C12 Fatty Acid
Length = 418
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 63 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 119
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++ACA+S
Sbjct: 120 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSACATSA 179
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 239
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 240 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 295
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+ ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 296 AMHGV-DTPIDYLNSEGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 352
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 353 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 411
Query: 477 LFAPYK 482
+ K
Sbjct: 412 VMRKLK 417
>pdb|1TQY|A Chain A, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|C Chain C, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|E Chain E, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|G Chain G, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 424
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 122/397 (30%), Positives = 192/397 (48%), Gaps = 13/397 (3%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
F L G TA I FD S + + + +G+ P+ + D+ +A+
Sbjct: 23 FWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGF-GPRELDRMDRASQFAVACA 81
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGLH-------VLSDGFEAIKVSYKKMSPF 202
++A A +G+ LD R GV +GSA+ +LSD +V +S
Sbjct: 82 REAFAASGLDPDT---LDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRH 138
Query: 203 CIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDG 262
Y + + A +A +G GP ++T C S S+ NA +G D+M G +D
Sbjct: 139 MFDYLVPSVMPAEVAWAVGAEGPVTMVSTGCTSGLDSVGNAVRAIEEGSADVMFAGAADT 198
Query: 263 AIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGAS 322
I P +A A + RN +P A+RP+D RDGFV+ +GA + +LE+ + A RGA
Sbjct: 199 PITPIVVACFDAIRATTARNDDPEHASRPFDGTRDGFVLAEGAAMFVLEDYDSALARGAR 258
Query: 323 IYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDL 382
I+AEI + C+AYH+T +G M + AL +S D++YINAH TR D
Sbjct: 259 IHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESRTDATDIDYINAHGSGTRQNDR 318
Query: 383 REYQAVIRCFGKNPELR-MNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPD 441
E A R G++ ++S KS++GH LGA G+ E A + A++ G + P NL D
Sbjct: 319 HETAAYKRALGEHARRTPVSSIKSMVGHSLGAIGSLEIAACVLALEHGVVPPTANLRTSD 378
Query: 442 KDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSILF 478
+ D + +ER ++ ++ GFGG S+++
Sbjct: 379 PECDLDYVPLEARER-KLRSVLTVGSGFGGFQSAMVL 414
>pdb|1F91|A Chain A, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|B Chain B, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|C Chain C, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|1F91|D Chain D, Beta-Ketoacyl-[acyl-Carrier-Protein] Synthase I In Complex
With C10 Fatty Acid Substrate
pdb|2CF2|A Chain A, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|J Chain J, Architecture Of Mammalian Fatty Acid Synthase
Length = 406
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 51 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 107
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++A A+S
Sbjct: 108 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSA 167
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 227
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 228 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 283
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 284 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 340
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 341 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 399
Query: 477 LFAPYK 482
+ K
Sbjct: 400 VMRKLK 405
>pdb|1EK4|A Chain A, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|B Chain B, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|C Chain C, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
pdb|1EK4|D Chain D, Beta-Ketoacyl [acyl Carrier Protein] Synthase I In Complex
With Dodecanoic Acid To 1.85 Resolution
Length = 418
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 63 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 119
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++A A+S
Sbjct: 120 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSASATSA 179
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 180 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 239
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 240 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 295
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 296 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 352
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 353 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 411
Query: 477 LFAPYK 482
+ K
Sbjct: 412 VMRKLK 417
>pdb|2VB7|C Chain C, Beta-Ketoacyl-Acp Synthase I (Kas) From E. Coli, Apo
Structure After Soak In Peg Solution
Length = 406
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 123/366 (33%), Positives = 201/366 (54%), Gaps = 14/366 (3%)
Query: 120 NLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITEQVSGELDKRRCGVIIGSAM 179
N+K L T G + KV + IYA ++ ++A+ADAG++ + + R G+I GS
Sbjct: 51 NVK-LDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAY--QNNPRVGLIAGSGG 107
Query: 180 GGLHVLSDGFEAIK--VSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSN 237
G G +A++ K + P+ + ++ + SA LA G +YSI++A A+S
Sbjct: 108 GSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSISSAXATSA 167
Query: 238 YSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRD 297
+ I NA G DI+ GG + + ++ N P KA+R +DA RD
Sbjct: 168 HCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRD 227
Query: 298 GFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKAL 357
GFV+ G G++++EELE A RGA IYAEI+ + D + AP EG V CM+ +
Sbjct: 228 GFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEGA--VRCMK--M 283
Query: 358 AQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFG-KNPELRMNSTKSLIGHLLGASGT 416
A GV ++Y+N+H ST +GD++E A+ FG K+P + ++TK++ GH LGA+G
Sbjct: 284 AMHGV-DTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAI--SATKAMTGHSLGAAGV 340
Query: 417 AEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSI 476
EA+ ++ ++ G+I P++N+E D+ +V +R ++ MSNS+GFGG N+++
Sbjct: 341 QEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDR-ELTTVMSNSFGFGGTNATL 399
Query: 477 LFAPYK 482
+ K
Sbjct: 400 VMRKLK 405
>pdb|4EWG|A Chain A, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
pdb|4EWG|B Chain B, Crystal Structure Of A Beta-Ketoacyl Synthase From
Burkholderia Phymatum Stm815
Length = 412
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 186/384 (48%), Gaps = 35/384 (9%)
Query: 115 MLDYINLKSLSTD------GWVSP-----KVGKKADKYMIYALVAGKKALADAGITEQVS 163
M D+ +SL T G+ P K + + +YA+ A + ALADAG S
Sbjct: 40 MPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVRASELALADAGFAGDES 99
Query: 164 GELDKRRCGVIIGSAMGGLH-------VLSDG--FEAIKVSYKKMSPFCIPYSLTNTASA 214
+ R GV GS+ G + +L G + SY +M P T +
Sbjct: 100 --ISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPH------TTAVNV 151
Query: 215 ALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVA 274
+L DL G ++ACAS + +I A G +ML GG++ PA +A
Sbjct: 152 SLFWDL--KGRIVPTSSACASGSQAIGYAYENIAMGKQTLMLAGGAEELSGPA-VAVFDT 208
Query: 275 CNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSC 334
S RN EP RP+DA RDG V+G+GA L+LEE E AK RGA+I+AEI+ +
Sbjct: 209 LYATSTRNDEPHLTPRPFDAKRDGLVVGEGAATLVLEEYEHAKARGATIHAEIVGFGCNS 268
Query: 335 DAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGK 394
D H+T P M M+ AL + + + Y+NAH ST GD+ E QA R FG+
Sbjct: 269 DGAHMT--QPTASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATARTFGE 326
Query: 395 NPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKK 454
+ ++S KS +GH LGA G EA TI+ ++ W P LNL D + +
Sbjct: 327 --RMPISSLKSYVGHTLGACGALEAWWTIEMMKRNWYAPTLNLTEVDPACAPLDYIRGEA 384
Query: 455 ERLDIKVAMSNSYGFGGHNSSILF 478
+D + MSN++ FGG N+S++F
Sbjct: 385 RAIDAEYVMSNNFAFGGINTSLIF 408
>pdb|3OYT|A Chain A, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
pdb|3OYT|B Chain B, 1.84 Angstrom Resolution Crystal Structure Of
3-Oxoacyl-(Acyl Carrier Protein) Synthase I (Fabb) From
Yersinia Pestis Co92
Length = 410
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 127/393 (32%), Positives = 207/393 (52%), Gaps = 14/393 (3%)
Query: 93 NLLEGVTAISDIQGF-DCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKK 151
+L EG + I+ Q F D S + + L+S D + KV + IYA +A ++
Sbjct: 28 SLQEGRSGITFAQEFKDAGXRSHVWGDVKLQSEPKD-LIDRKVLRFXSDASIYAYLAXQE 86
Query: 152 ALADAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKV--SYKKMSPFCIPYSLT 209
A+AD+G+++ ++ R G+++GS G G +A + K + P+ + +
Sbjct: 87 AIADSGLSDS---QVSNFRSGLVVGSGGGSPRNQVAGSDAXRTPRGLKGVGPYXVTKAXA 143
Query: 210 NTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGI 269
+ SA LA G +YSI++ACA+S + I +A L G DI+ GG +
Sbjct: 144 SGVSACLATPFKIKGVNYSISSACATSAHCIGHALELIQLGKQDIVFAGGGEELCWEXAC 203
Query: 270 AGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILA 329
+ ++ N P KA+R +D DRDGFV+ G G +++EELE A RGA IYAEI+
Sbjct: 204 EFDAXGALSTKYNDTPAKASRTYDQDRDGFVIAGGGGXVVVEELEHALARGAHIYAEIVG 263
Query: 330 GSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVI 389
+ D AP EG V C + A A GV ++Y N H ST +GD++E A+
Sbjct: 264 YGATSDGADXVAPSGEGA--VRCXQXAXA--GV-DTPIDYXNVHGTSTPVGDVKELGAIR 318
Query: 390 RCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVL 449
FG N ++STK+ GH LGA+G EA+ ++ ++ G+I P++N++N D+ +
Sbjct: 319 EVFGNNTPA-ISSTKAXTGHSLGAAGVHEAIFSLLXVEHGFIAPSINIDNLDEQAQGXNI 377
Query: 450 VGPKKERLDIKVAMSNSYGFGGHNSSILFAPYK 482
+ +R ++ SNS+GFGG N++++ Y+
Sbjct: 378 ITETTQR-ELTTVXSNSFGFGGTNATLVXRKYQ 409
>pdb|2QO3|A Chain A, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
pdb|2QO3|B Chain B, Crystal Structure Of [ks3][at3] Didomain From Module 3 Of
6- Deoxyerthronolide B Synthase
Length = 915
Score = 98.6 bits (244), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 134/287 (46%), Gaps = 20/287 (6%)
Query: 206 YSLTNTASAA----LAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
YS+T A A ++ +G GPS S++TAC+SS ++ A KG++ + + GG+
Sbjct: 146 YSVTGVAPAVASGRISYTMGLEGPSISVDTACSSSLVALHLAVESLRKGESSMAVVGGAA 205
Query: 262 GAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGA 321
P V + QR ++ + A DGF +G ++LLE L +A++ G
Sbjct: 206 VMATPG-----VFVDFSRQRALAADGRSKAFGAGADGFGFSEGVTLVLLERLSEARRNGH 260
Query: 322 SIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGD 381
+ A + +L+ D P G + +AL G+ DV+ + AH T LGD
Sbjct: 261 EVLAVVRGSALNQDGASNGLSAPSGPAQRRVIRQALESCGLEPGDVDAVEAHGTGTALGD 320
Query: 382 LREYQAVIRCFGKNPE----LRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNL 437
E A++ +G++ + L + S KS IGH A+G + + A++ G + L++
Sbjct: 321 PIEANALLDTYGRDRDADRPLWLGSVKSNIGHTQAAAGVTGLLKVVLALRNGELPATLHV 380
Query: 438 ENPDKDVD-----AKVLVG--PKKERLDIKVAMSNSYGFGGHNSSIL 477
E P VD +L G P + + A +++G G N+ ++
Sbjct: 381 EEPTPHVDWSSGGVALLAGNQPWRRGERTRRAAVSAFGISGTNAHVI 427
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 162/393 (41%), Gaps = 53/393 (13%)
Query: 101 ISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITE 160
+ D+ FD S F V PK D + L +A+ D GI
Sbjct: 56 LKDLSRFDASFFG----------------VHPKQAHTMDPQLRLLLEVTYEAIVDGGINP 99
Query: 161 QVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL 220
L GV +G + S+ EA+ + + + YS+ A +A L
Sbjct: 100 D---SLRGTHTGVWVGVSG------SETSEALSRDPETL----VGYSMVGCQRAMMANRL 146
Query: 221 GW----TGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACN 276
+ GPS +++TAC+SS ++ NA G + GG + + P +
Sbjct: 147 SFFFDFRGPSIALDTACSSSLMALQNAYQAIHSGQCPAAIVGGINVLLKPNTSVQFLRLG 206
Query: 277 VLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDA 336
+LS P + +D +G+ +G +LL + A++ +YA IL + D
Sbjct: 207 MLS-----PEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR----VYATILNAGTNTDG 257
Query: 337 Y-HLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIR--CFG 393
+ P G + +GVA E YI AH T++GD +E + R C
Sbjct: 258 FKEQGVTFPSGDIQEQLIRSLYQSAGVAPESFEYIEAHGTGTKVGDPQELNGITRALCAT 317
Query: 394 KNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPK 453
+ L + STKS +GH ASG A + +++ G PNL+ +P+ ++ A L+ +
Sbjct: 318 RQEPLLIGSTKSNMGHPEPASGLAALAKVLLSLEHGLWAPNLHFHSPNPEIPA--LLDGR 375
Query: 454 KERLDIKVAMS------NSYGFGGHNSSILFAP 480
+ +D + + NS+GFGG N I+ P
Sbjct: 376 LQVVDQPLPVRGGNVGINSFGFGGSNVHIILRP 408
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 131/283 (46%), Gaps = 22/283 (7%)
Query: 209 TNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDT-DIMLCGGSDGAIIPA 267
++ AS +A LG GP+ +++TAC SS + L+ A ++ D + L GG P
Sbjct: 175 SSVASGRVAYCLGLEGPAXTVDTAC-SSGLTALHLAXESLRRDECGLALAGGVTVXSSPG 233
Query: 268 GIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEI 327
SQ +P+ DGF + +GAGVL+L+ L A++ G + A +
Sbjct: 234 AF-----TEFRSQGGLAADGRCKPFSKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVL 288
Query: 328 LAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQA 387
+++ D P G + +AL +GV DV+Y+ AH TRLGD E A
Sbjct: 289 RGSAVNQDGASNGLTAPSGPAQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHA 348
Query: 388 VIRCFG--KNPE--LRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKD 443
++ +G ++P+ L + S KS IGH A+G A + A++ G L+ + P
Sbjct: 349 LLSTYGAERDPDDPLWIGSVKSNIGHTQAAAGVAGVXKAVLALRHGEXPRTLHFDEPSPQ 408
Query: 444 VD---------AKVLVGPKKERLDIKVAMSNSYGFGGHNSSIL 477
++ ++ P ER + A +S+G G N+ ++
Sbjct: 409 IEWDLGAVSVVSQARSWPAGER--PRRAGVSSFGISGTNAHVI 449
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/393 (24%), Positives = 164/393 (41%), Gaps = 53/393 (13%)
Query: 101 ISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAGKKALADAGITE 160
+ D+ FD S F V K D + L +A+ D GI
Sbjct: 54 LKDLSRFDASFFG----------------VHSKQANTMDPQLRMLLEVTYEAIVDGGIN- 96
Query: 161 QVSGELDKRRCGVIIGSAMGGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL 220
L GV +G + SD EA+ + + + YS+ A +A L
Sbjct: 97 --PASLRGTSTGVWVGVSS------SDASEALSRDPETL----VGYSMIGCQRAMMANRL 144
Query: 221 GW----TGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGAIIPAGIAGLVACN 276
+ GPS +I+TAC+SS ++ +A G+ + GG + + P +
Sbjct: 145 SFFFDFKGPSITIDTACSSSLLALQSAYQAIRGGECSAAVVGGLNVLLKPNSSLQFMKLG 204
Query: 277 VLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEIL-AGSLSCD 335
+LSQ + R +DA+ G+ + +LL + A++ +YA IL AG+ +
Sbjct: 205 MLSQDGT-----CRSFDAEGTGYCRAEAVVAVLLTKKSLARR----VYATILNAGTNTDG 255
Query: 336 AYHLTAPHPEGVGMVSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIR--CFG 393
+ P G + A +G E + YI AH T++GD +E ++ C
Sbjct: 256 SKEQGVTFPSGDVQEQLIRSLYAPAGPDPESLEYIEAHGTGTKVGDPQELNGIVNALCAT 315
Query: 394 KNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPK 453
+ L + STKS +GH ASG A + + +++ G PNL+ P+ ++ A L +
Sbjct: 316 RREPLLIGSTKSNMGHPEPASGVAALIKVLLSLEHGVWAPNLHYHTPNPEIPA--LQDGR 373
Query: 454 KERLDIKVAMS------NSYGFGGHNSSILFAP 480
+ +D + + NS+GFGG N ++ P
Sbjct: 374 LQVVDRPLPIRGGNVGINSFGFGGSNVHVILQP 406
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats.
Identities = 86/366 (23%), Positives = 153/366 (41%), Gaps = 26/366 (7%)
Query: 130 VSPKVGKKADKYMIYALVAGKKALADAGIT-EQVSGELDKRRCGVIIGSAMGGLHVLSDG 188
+SP + D+ ++ +VA A +G T ++ + + G+ MGG+ +
Sbjct: 2636 ISPDMASSIDRVALWNIVATVDAFLSSGFTPTELMRWVHPSQVASTQGTGMGGMTSMQTM 2695
Query: 189 FEAIKVSYKKMSPFCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRI 248
+ + K + A+ + +G G ACA++ S+ +
Sbjct: 2696 YHGNLLGRAKPNDILQEVLPNVVAAHVMQSYVGGYGAMVHPVGACATAAVSVEEGVDKIK 2755
Query: 249 KGDTDIMLCGGSDG----AIIPAG-IAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGK 303
G D+++ GG D AII G +A ++ + +K +R D R GF+ +
Sbjct: 2756 LGKADLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSKFSRANDRRRLGFLEAQ 2815
Query: 304 GAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMV--------SCMEK 355
G G +LL + A K G + A + D H + P P G+G + S + +
Sbjct: 2816 GGGTILLARGDLALKMGLPVLAVVGYAQSFADGVHTSIPAP-GLGALGAARGGRESTLAR 2874
Query: 356 ALAQSGVAKEDVNYINAHAPSTRLGDLRE---YQAVIRCFGKNP--ELRMNSTKSLIGHL 410
+LAQ GV +D+ I+ H ST D E ++ + G+ P L + S K+L GH
Sbjct: 2875 SLAQLGVGADDIAVISKHDTSTLANDPNETELHERIADSMGRAPGNPLFIVSQKTLTGHA 2934
Query: 411 LGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDAKVLVGPKKERLD------IKVAMS 464
G + + + + ++ G I PN +L+ D ++ +E LD +K +
Sbjct: 2935 KGGAAVFQMMGLCQILRDGVIPPNRSLDCVDDELATSGHFVWVREPLDLRGKFPLKAGLV 2994
Query: 465 NSYGFG 470
S GFG
Sbjct: 2995 TSLGFG 3000
>pdb|1TQY|B Chain B, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|D Chain D, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|F Chain F, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
pdb|1TQY|H Chain H, The Actinorhodin KetosynthaseCHAIN LENGTH FACTOR
Length = 415
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/407 (24%), Positives = 179/407 (43%), Gaps = 38/407 (9%)
Query: 90 FHTNLLEGVTAISDIQGFDCSEFSTMLDYINLKSLSTDGWVSPKVGKKADKYMIYALVAG 149
+ + +L+G + + FD S + L + + ++ + D AL A
Sbjct: 29 YWSAVLDGRHGLGPVTRFDVSRYPATL-AGQIDDFHAPDHIPGRLLPQTDPSTRLALTAA 87
Query: 150 KKALADAGITEQVSGELDKRRCGVIIGSAMGGL--------HVLSDGFEAIKVSYKKMSP 201
AL DA + + D GV+ +A GG + S+G +++ V Y+ +
Sbjct: 88 DWALQDAKADPESLTDYD---MGVVTANACGGFDFTHREFRKLWSEGPKSVSV-YESFAW 143
Query: 202 FCIPYSLTNTASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
F Y++ NT +++ G GPS ++ A + L A I+ T +++ GG D
Sbjct: 144 F---YAV-NTGQ--ISIRHGMRGPSSAL-VAEQAGGLDALGHARRTIRRGTPLVVSGGVD 196
Query: 262 GAIIPAGIAGLVACNVLSQRNSEPTKAARPWDADRDGFVMGKGAGVLLLEELEQAKKRGA 321
A+ P G +A +S ++P +A P+D G+V G+G +L+LE+ A+ RG
Sbjct: 197 SALDPWGWVSQIASGRIST-ATDPDRAYLPFDERAAGYVPGEGGAILVLEDSAAAEARGR 255
Query: 322 -SIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEK----ALAQSGVAKEDVNYINAHAPS 376
Y E LAG C + AP G G + +E+ AL +G EDV+ + A
Sbjct: 256 HDAYGE-LAG---CASTFDPAP---GSGRPAGLERAIRLALNDAGTGPEDVDVVFADGAG 308
Query: 377 TRLGDLREYQAVIRCFGKNPELRMNSTKSLIGHLLGASGTAEAVATIKAIQTGWIHPNLN 436
D E +A+ R FG+ + + K+ G L G + V + +++ G I P
Sbjct: 309 VPELDAAEARAIGRVFGRE-GVPVTVPKTTTGRLYSGGGPLDVVTALMSLREGVIAPTAG 367
Query: 437 LENPDKDVDAKVLVGPKKERLDIKVAMSNSYGFGGHNSSIL---FAP 480
+ + ++ +++G + + A+ + G G NS+ + FAP
Sbjct: 368 VTSVPREYGIDLVLGEPRSTAP-RTALVLARGRWGFNSAAVLRRFAP 413
>pdb|2UV9|A Chain A, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|B Chain B, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|C Chain C, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|D Chain D, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|E Chain E, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UV9|F Chain F, Crystal Structure Of Fatty Acid Synthase From Thermomyces
Lanuginosus At 3.1 Angstrom Resolution. This File
Contains The Alpha Subunits Of The Fatty Acid Synthase.
The Entire Crystal Structure Consists Of One
Heterododecameric Fatty Acid Synthase And Is Described In
Remark 400
pdb|2UVB|A Chain A, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|B Chain B, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|C Chain C, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|D Chain D, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|E Chain E, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
pdb|2UVB|F Chain F, Crystal Structure Of Fatty Acid Synthase Complexed With
Nadp+ From Thermomyces Lanuginosus At 3.1 Angstrom
Resolution. This File Contains The Alpha Subunits Of The
Fatty Acid Synthase. The Entire Crystal Structure
Consists Of One Heterododecameric Fatty Acid Synthase And
Is Described In Remark 400
Length = 1878
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 104/243 (42%), Gaps = 15/243 (6%)
Query: 128 GWVSPKVG------KKADKYMIYALVAGKKALADAGITE--QVSGELDKRRCGVIIGSAM 179
GW + + G ++ D +Y LV+ +AL +GIT+ + + G IGS +
Sbjct: 1167 GWDARRYGVPEDIIQQVDPVTLYVLVSVAEALLSSGITDPYEFYKYVHLSEVGNCIGSGV 1226
Query: 180 GGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL-GWTGPSYSINTACASSNY 238
GG L G + K + + S NT +A + M L TGP + ACA++
Sbjct: 1227 GGTSALR-GMYKDRYLDKPVQKDILQESFVNTMAAWVNMLLLSSTGPIKTPVGACATAVE 1285
Query: 239 SILNAANLRIKGDTDIMLCGGSD-----GAIIPAGIAGLVACNVLSQRNSEPTKAARPWD 293
S+ + ++G + L GG D G+ A + R EP + +RP
Sbjct: 1286 SLDVGYDTIMQGKARVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGEMSRPTS 1345
Query: 294 ADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCM 353
R+GF+ +G GV ++ + A + G IY + S + D + P P + +
Sbjct: 1346 TTRNGFMESQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAR 1405
Query: 354 EKA 356
EK+
Sbjct: 1406 EKS 1408
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 350 VSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMNST-----K 404
++ + ALA G+ +D+ + H ST D E + + + N+ K
Sbjct: 1500 IAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQLKHLGRTKGNAVLGIFQK 1559
Query: 405 SLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA-KVLVGPKKE-RLD-IKV 461
L GH GA+G ++ + TG + N N +N DK ++ +V P + + D IK
Sbjct: 1560 YLTGHPKGAAGAWMLNGCLQVLNTGIVPGNRNADNVDKVMEQFDYIVYPSRSIKTDGIKA 1619
Query: 462 AMSNSYGFG 470
S+GFG
Sbjct: 1620 FSVTSFGFG 1628
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 16/239 (6%)
Query: 128 GW------VSPKVGKKADKYMIYALVAGKKALADAGITE--QVSGELDKRRCGVIIGSAM 179
GW +S + + D ++ LV+ +A +GIT+ ++ + G GS M
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 180 GGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL-GWTGPSYSINTACASSNY 238
GG+ L F+ + + + + S NT SA + M L +GP + ACA+S
Sbjct: 1252 GGVSALRGMFKD-RFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVE 1310
Query: 239 SILNAANLRIKGDTDIMLCGGSD-----GAIIPAGIAGLVACNVLSQRNSEPTKAARPWD 293
S+ + G I + GG D G+ + + P + +RP
Sbjct: 1311 SVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPAT 1370
Query: 294 ADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSC 352
R+GF+ +GAG+ ++ + + A K G IY + + + D + P P G G+++
Sbjct: 1371 TTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-GKGILTT 1428
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 350 VSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAV---IRCFGK---NPELRMNST 403
++ + ALA G+ +D+ + H ST+ D E + ++ G+ NP + +
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ- 1577
Query: 404 KSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA--KVLVGPKKERLD-IK 460
K L GH GA+G ++ + +G I N N +N DK ++ VL K + D ++
Sbjct: 1578 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVR 1637
Query: 461 VAMSNSYGFG 470
S+GFG
Sbjct: 1638 AVSITSFGFG 1647
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 16/239 (6%)
Query: 128 GW------VSPKVGKKADKYMIYALVAGKKALADAGITE--QVSGELDKRRCGVIIGSAM 179
GW +S + + D ++ LV+ +A +GIT+ ++ + G GS M
Sbjct: 1192 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1251
Query: 180 GGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL-GWTGPSYSINTACASSNY 238
GG+ L F+ + + + + S NT SA + M L +GP + ACA+S
Sbjct: 1252 GGVSALRGMFKD-RFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVE 1310
Query: 239 SILNAANLRIKGDTDIMLCGGSD-----GAIIPAGIAGLVACNVLSQRNSEPTKAARPWD 293
S+ + G I + GG D G+ + + P + +RP
Sbjct: 1311 SVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPAT 1370
Query: 294 ADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSC 352
R+GF+ +GAG+ ++ + + A K G IY + + + D + P P G G+++
Sbjct: 1371 TTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-GKGILTT 1428
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 350 VSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAV---IRCFGK---NPELRMNST 403
++ + ALA G+ +D+ + H ST+ D E + ++ G+ NP + +
Sbjct: 1519 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ- 1577
Query: 404 KSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA--KVLVGPKKERLD-IK 460
K L GH GA+G ++ + +G I N N +N DK ++ VL K + D ++
Sbjct: 1578 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVR 1637
Query: 461 VAMSNSYGFG 470
S+GFG
Sbjct: 1638 AVSITSFGFG 1647
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 16/239 (6%)
Query: 128 GW------VSPKVGKKADKYMIYALVAGKKALADAGITE--QVSGELDKRRCGVIIGSAM 179
GW +S + + D ++ LV+ +A +GIT+ ++ + G GS M
Sbjct: 993 GWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGM 1052
Query: 180 GGLHVLSDGFEAIKVSYKKMSPFCIPYSLTNTASAALAMDL-GWTGPSYSINTACASSNY 238
GG+ L F+ + + + + S NT SA + M L +GP + ACA+S
Sbjct: 1053 GGVSALRGMFKD-RFKDEPVQNDILQESFINTMSAWVNMLLISSSGPIKTPVGACATSVE 1111
Query: 239 SILNAANLRIKGDTDIMLCGGSD-----GAIIPAGIAGLVACNVLSQRNSEPTKAARPWD 293
S+ + G I + GG D G+ + + P + +RP
Sbjct: 1112 SVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAEMSRPAT 1171
Query: 294 ADRDGFVMGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSC 352
R+GF+ +GAG+ ++ + + A K G IY + + + D + P P G G+++
Sbjct: 1172 TTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAP-GKGILTT 1229
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Query: 350 VSCMEKALAQSGVAKEDVNYINAHAPSTRLGDLREYQAV---IRCFGK---NPELRMNST 403
++ + ALA G+ +D+ + H ST+ D E + ++ G+ NP + +
Sbjct: 1320 IAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQ- 1378
Query: 404 KSLIGHLLGASGTAEAVATIKAIQTGWIHPNLNLENPDKDVDA--KVLVGPKKERLD-IK 460
K L GH GA+G ++ + +G I N N +N DK ++ VL K + D ++
Sbjct: 1379 KFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTLKTDGVR 1438
Query: 461 VAMSNSYGFG 470
S+GFG
Sbjct: 1439 AVSITSFGFG 1448
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 304 GAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVA 363
GA ++L + +A KRG + A I++ S P G+G + +++A+ ++G +
Sbjct: 257 GAAAVVLMKKSEADKRGLTPLARIVSWSQVG-----VEPSIMGIGPIPAIKQAVTKAGWS 311
Query: 364 KEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPE-LRMNSTKSLIGHLLGASG 415
EDV+ + + A+++ G NPE + + +GH LGASG
Sbjct: 312 LEDVDIFEINEAFAAV-----SAAIVKELGLNPEKVNIEGGAIALGHPLGASG 359
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 225 PSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
P+ +IN C S S+ A+ L GD DIML GG++
Sbjct: 85 PAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAE 121
>pdb|1QHB|A Chain A, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|B Chain B, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|C Chain C, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|D Chain D, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|E Chain E, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
pdb|1QHB|F Chain F, Vanadium Bromoperoxidase From Red Alga Corallina
Officinalis
Length = 596
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 162 VSGELDKRRCGVIIGSAMGGLHVLSDGFEAI 192
V+GEL+K V IG M G+H SD FE++
Sbjct: 530 VAGELNKLADNVAIGRNMAGVHYFSDQFESL 560
>pdb|1UP8|A Chain A, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|B Chain B, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|C Chain C, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
pdb|1UP8|D Chain D, Recombinant Vanadium-Dependent Bromoperoxidase From Red
Algae Corallina Pilulifera
Length = 598
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 159 TEQVSGELDKRRCGVIIGSAMGGLHVLSDGFEAI 192
T V+GEL+K + IG M G+H SD FE++
Sbjct: 529 TLTVAGELNKLADNIAIGRNMAGVHYFSDQFESL 562
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 301 MGKGAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPEGVGMVSCMEKALAQS 360
+ GA +LL + AK G A + A +++ P G+G V KAL ++
Sbjct: 255 LNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAG-----VPPRIMGIGPVPATRKALERA 309
Query: 361 GVAKEDVNYI--NAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSLIGHLLGASG 415
G++ D+ I N + L LRE+ + NP N +GH LGASG
Sbjct: 310 GLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNP----NGGAIALGHPLGASG 362
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 211 TASAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
T A L L + P +IN CAS +I+ A+ + G D+M+ GG +
Sbjct: 72 TRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGME 122
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 225 PSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSD 261
PSY++N C S S+ AA G+ D+++ GG++
Sbjct: 83 PSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTE 119
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 17/136 (12%)
Query: 304 GAGVLLLEELEQAKKRGASIYAEILAGSLSCDAYHLTAPHPE--GVGMVSCMEKALAQSG 361
GA +L+L ++A + G A+I +Y PE G G + KAL ++G
Sbjct: 256 GAAMLILMSQQKADELGIRPLAKI-------KSYASAGVEPEVMGTGPIPATRKALKKAG 308
Query: 362 VAKEDVNYINAHA--PSTRLGDLREYQAVIRCFGKNPELRMNSTKSLIGHLLGASGTAEA 419
++ D++ I A+ + L E Q + +L +N +GH +GASG
Sbjct: 309 LSINDIDLIEANEAFAAQALAVKNELQI------DSSKLNVNGGAIALGHPIGASGARIL 362
Query: 420 VATIKAIQTGWIHPNL 435
V I +Q + L
Sbjct: 363 VTLIYEMQKRKVETGL 378
>pdb|3EW1|A Chain A, Crystal Structure Of Rhizavidin
pdb|3EW1|B Chain B, Crystal Structure Of Rhizavidin
pdb|3EW1|C Chain C, Crystal Structure Of Rhizavidin
pdb|3EW1|D Chain D, Crystal Structure Of Rhizavidin
pdb|3EW1|E Chain E, Crystal Structure Of Rhizavidin
pdb|3EW1|F Chain F, Crystal Structure Of Rhizavidin
pdb|3EW2|A Chain A, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|B Chain B, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|C Chain C, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|D Chain D, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|E Chain E, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|F Chain F, Crystal Structure Of Rhizavidin-Biotin Complex
pdb|3EW2|G Chain G, Crystal Structure Of Rhizavidin-Biotin Complex
Length = 135
Score = 31.2 bits (69), Expect = 1.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 205 PYSLTNTASAA-LAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGGSDGA 263
PY LT + +A +GW + + N+A + Y+ +N N I ++ GGS A
Sbjct: 54 PYPLTGRVNGTFIAFSVGWNNSTENCNSATGWTGYAQVNGNNTEIVTSWNLAYEGGSGPA 113
Query: 264 I 264
I
Sbjct: 114 I 114
>pdb|3G1Q|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
pdb|3G1Q|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei In Ligand Free State
Length = 450
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 347 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 393
>pdb|3GW9|A Chain A, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|B Chain B, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|C Chain C, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
pdb|3GW9|D Chain D, Crystal Structure Of Sterol 14-Alpha Demethylase (Cyp51)
From Trypanosoma Brucei Bound To An Inhibitor N-(1-(2,4-
Dichlorophenyl)-2-(1h-Imidazol-1-Yl)ethyl)-4-(5-Phenyl-
1,3, 4-Oxaziazol-2-Yl)benzamide
Length = 450
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 346 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 392
>pdb|2WV2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Brucei In Complex With Fluconazole
Length = 475
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 359 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 405
>pdb|3TIK|A Chain A, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|B Chain B, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|C Chain C, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
pdb|3TIK|D Chain D, Sterol 14-Alpha Demethylase (Cyp51) From Trypanosoma
Brucei In Complex With The Tipifarnib Derivative
6-((4-Chlorophenyl)(Methoxy)(1-Methyl-
1h-Imidazol-5-Yl)methyl)-4-(2,
6-Difluorophenyl)-1-Methylquinolin- 2(1h)-One
Length = 454
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 346 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 392
>pdb|3P99|A Chain A, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|B Chain B, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|C Chain C, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
pdb|3P99|D Chain D, Sterol 14alpha-Demethylase (Cyp51) From Trypanosoma Brucei
In Complex With
Delta7-14alpha-Methylene-Cyclopropyl-Dihydrolanosterol
Length = 453
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 345 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 391
>pdb|2X2N|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|C Chain C, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
pdb|2X2N|D Chain D, X-Ray Structure Of Cyp51 From Trypanosoma Brucei In
Complex With Posaconazole In Two Different Conformations
Length = 475
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 359 VVPKG--DIIACSPLLSHHDEEAFPEPRRWDPERDEKVEGAFIGFGAGV 405
>pdb|2VAT|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
pdb|2VAT|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase In Complex With Coenzyme A
Length = 444
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 155 DAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGF 189
D I QV L R+ ++G++MGG+H L F
Sbjct: 185 DVRIHRQVLDRLGVRQIAAVVGASMGGMHTLEWAF 219
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 213 SAALAMDLGWTGPSYSINTACASSNYSILNAANLRIKGDTDIMLCGG 259
+AAL ++ + P+ ++N C SS ++ +AA GD + L GG
Sbjct: 71 NAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGG 117
>pdb|2VAV|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAV|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Dac-Soak)
pdb|2VAX|A Chain A, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|B Chain B, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|C Chain C, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|D Chain D, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|E Chain E, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|F Chain F, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|G Chain G, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|H Chain H, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|I Chain I, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|J Chain J, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|K Chain K, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
pdb|2VAX|L Chain L, Crystal Structure Of Deacetylcephalosporin C
Acetyltransferase (Cephalosporin C-Soak)
Length = 444
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 155 DAGITEQVSGELDKRRCGVIIGSAMGGLHVLSDGF 189
D I QV L R+ ++G+ MGG+H L F
Sbjct: 185 DVRIHRQVLDRLGVRQIAAVVGAXMGGMHTLEWAF 219
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 14/113 (12%)
Query: 305 AGVLLLEELEQAKKRGASIYAEILA-GSLSCDAYHLTAPHPEGVGMVSCMEKALAQSGVA 363
A LL+ E E A +RG I++ ++ D P G G + KAL ++G
Sbjct: 254 AAALLMSEAE-ASRRGIQPLGRIVSWATVGVD------PKVMGTGPIPASRKALERAGWK 306
Query: 364 KEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPEL-RMNSTKSLIGHLLGASG 415
D++ + AH + AV + G +P + +N IGH +GASG
Sbjct: 307 IGDLDLVEAHEAFA-----AQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASG 354
>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
With Fluconazole In Alternative Conformation
pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
Trypanosoma Cruzi In Complex With Fluconazole
Length = 473
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 359 VVPKG--DIIACSPLLSHHDEEAFPNPRLWDPERDEKVDGAFIGFGAGV 405
>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
From Trypanosoma Cruzi In Complex With Inhibitor
Fluconazole
Length = 464
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 350 VVPKG--DIIACSPLLSHHDEEAFPNPRLWDPERDEKVDGAFIGFGAGV 396
>pdb|3K1O|A Chain A, Crystal Structure Of Sterol 14-alpha Demethylase (cyp51)
From Trypanosoma Cruzi In Complex With A Potential
Antichagasic Drug, Posaconazole
pdb|3KSW|A Chain A, Crystal Structure Of Sterol 14alpha-demethylase (cyp51)
From Trypanosoma Cruzi In Complex With An Inhibitor Vnf
((4-(4-
Chlorophenyl)-n-[2-(1h-imidazol-1-yl)-1-
phenylethyl]benzamide)
Length = 458
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 264 IIPAGIAGLVACN-VLSQRNSEPTKAARPWDADRD----GFVMGKGAGV 307
++P G ++AC+ +LS + E R WD +RD G +G GAGV
Sbjct: 344 VVPKG--DIIACSPLLSHHDEEAFPNPRLWDPERDEKVDGAFIGFGAGV 390
>pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
pdb|2QXL|B Chain B, Crystal Structure Analysis Of Sse1, A Yeast Hsp110
Length = 658
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 355 KALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSL 406
KALAQ+ ++ E+V+++ +TR+ L+ Q++ FGK +N +++
Sbjct: 322 KALAQAKLSAEEVDFVEIIGGTTRIPTLK--QSISEAFGKPLSTTLNQDEAI 371
>pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70
pdb|3D2F|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70
Length = 675
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 355 KALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSL 406
KALAQ+ ++ E+V+++ +TR+ L+ Q++ FGK +N +++
Sbjct: 323 KALAQAKLSAEEVDFVEIIGGTTRIPTLK--QSISEAFGKPLSTTLNQDEAI 372
>pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 668
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 355 KALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSL 406
KALAQ+ ++ E+V+++ +TR+ L+ Q++ FGK +N +++
Sbjct: 325 KALAQAKLSAEEVDFVEIIGGTTRIPTLK--QSISEAFGKPLSTTLNQDEAI 374
>pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
pdb|3D2E|C Chain C, Crystal Structure Of A Complex Of Sse1p And Hsp70,
Selenomethionine- Labeled Crystals
Length = 675
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 355 KALAQSGVAKEDVNYINAHAPSTRLGDLREYQAVIRCFGKNPELRMNSTKSL 406
KALAQ+ ++ E+V+++ +TR+ L+ Q++ FGK +N +++
Sbjct: 323 KALAQAKLSAEEVDFVEIIGGTTRIPTLK--QSISEAFGKPLSTTLNQDEAI 372
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,662,259
Number of Sequences: 62578
Number of extensions: 543696
Number of successful extensions: 1554
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 92
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)