Query 011495
Match_columns 484
No_of_seqs 188 out of 499
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 8.5E-78 1.8E-82 599.9 29.5 267 41-323 1-274 (274)
2 KOG2641 Predicted seven transm 100.0 3E-77 6.5E-82 615.0 28.3 320 40-384 32-358 (386)
3 KOG3979 FGF receptor activatin 75.4 18 0.0004 37.4 9.3 120 3-129 139-260 (296)
4 COG1480 Predicted membrane-ass 59.8 68 0.0015 37.0 10.5 17 249-265 471-487 (700)
5 KOG2927 Membrane component of 36.7 19 0.00042 38.2 1.6 65 169-257 205-275 (372)
6 PF06609 TRI12: Fungal trichot 33.0 7.4E+02 0.016 28.3 13.4 68 191-259 239-308 (599)
7 PF10277 Frag1: Frag1/DRAM/Sfk 31.9 4.3E+02 0.0093 24.6 10.8 89 40-128 119-208 (215)
8 PF03595 SLAC1: Voltage-depend 29.7 5.4E+02 0.012 26.1 10.9 85 41-125 170-263 (330)
9 PF13962 PGG: Domain of unknow 29.3 3.8E+02 0.0082 23.2 8.5 28 3-30 7-37 (113)
10 PRK11056 hypothetical protein; 27.0 1.7E+02 0.0037 26.6 5.7 55 49-103 37-91 (120)
11 COG3833 MalG ABC-type maltose 26.9 7.4E+02 0.016 25.8 11.8 133 46-213 80-214 (282)
12 PF14126 DUF4293: Domain of un 26.8 5.2E+02 0.011 24.0 11.9 52 47-102 55-108 (149)
13 PF08285 DPM3: Dolichol-phosph 25.7 1.3E+02 0.0027 26.0 4.5 40 74-116 31-70 (91)
14 PF00558 Vpu: Vpu protein; In 25.3 89 0.0019 26.5 3.4 36 46-83 8-43 (81)
15 PF14333 DUF4389: Domain of un 24.2 1.8E+02 0.0039 24.2 5.1 39 75-127 2-40 (80)
16 PF07226 DUF1422: Protein of u 23.7 2.2E+02 0.0048 25.8 5.8 54 49-102 37-90 (117)
17 PF13850 ERGIC_N: Endoplasmic 23.1 51 0.0011 28.2 1.7 31 46-76 20-50 (96)
18 PF11810 DUF3332: Domain of un 22.9 1.2E+02 0.0025 29.3 4.2 52 47-98 10-65 (176)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=8.5e-78 Score=599.91 Aligned_cols=267 Identities=42% Similarity=0.836 Sum_probs=256.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Q 011495 41 YSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYC 120 (484)
Q Consensus 41 h~~a~~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~aiy~d~iRd~YEAfvIY~ 120 (484)
|+|++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|+|++|||||||++|+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~ 80 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS 80 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCCcc---ccccccccCChhHHHHHHhhhhhhhHHHHH
Q 011495 121 FERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPL---NCILRDWRLGPEFYNAVKIGIVQYMILKMI 197 (484)
Q Consensus 121 F~~LLi~ylGGe~~~i~~L~~~~~~~~~~~ll~~~~~~~~~~h~~P~---~cc~~p~~lg~~fl~~~K~gVLQyvivKPl 197 (484)
|+.||++|+|||+++++.+++ +++++|+||+ +||+|++++|++++++||+||+||+++||+
T Consensus 81 F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl 144 (274)
T PF03619_consen 81 FFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPL 144 (274)
T ss_pred HHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887752 3456689998 466799999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHH
Q 011495 198 CALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIV 277 (484)
Q Consensus 198 ~ailaiIle~~GvY~eg~~~~~~~ylyl~iI~niS~~lALY~Lv~FY~a~ke~L~p~~Pl~KFl~IK~VVFltfwQgviI 277 (484)
+++++++++++|.|+||+++++.+|+|+++++|+|+++|||||++||+++|++|+|+||++||+|+|+|||++|||+++|
T Consensus 145 ~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii 224 (274)
T PF03619_consen 145 LSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFII 224 (274)
T ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCc---H-HHHHHHhhhhHHHHHHHHHHHHHhhcccCccC
Q 011495 278 AFLFSIGAFRGSL---A-QELKTRIQDYIICIEMGIAAVVHLYVFPARPY 323 (484)
Q Consensus 278 siL~~~Gvi~~~~---~-~~~~~~iqd~LICiEM~i~Ailh~~aFp~~pY 323 (484)
++|.+.|++++.. + +++++++||+|+|+||+++|++|+||||++||
T Consensus 225 ~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 225 SILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 9999999999743 2 48999999999999999999999999999998
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=3e-77 Score=615.03 Aligned_cols=320 Identities=39% Similarity=0.679 Sum_probs=288.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 011495 40 AYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALY 119 (484)
Q Consensus 40 ~h~~a~~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~aiy~d~iRd~YEAfvIY 119 (484)
.|+++..+|+.|+++|+.+|+++|++||+||+||++||+|+||++|+||||+.||+||+.|++++|+|++||||||||||
T Consensus 32 ~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ly 111 (386)
T KOG2641|consen 32 LLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVAFYLDTVRECYEAFVLY 111 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCCcccccccccc-CChhHHHHHHhhhhhhhHHHHHH
Q 011495 120 CFERYLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWR-LGPEFYNAVKIGIVQYMILKMIC 198 (484)
Q Consensus 120 ~F~~LLi~ylGGe~~~i~~L~~~~~~~~~~~ll~~~~~~~~~~h~~P~~cc~~p~~-lg~~fl~~~K~gVLQyvivKPl~ 198 (484)
+|++||.+|+|||++++..++++. .+.+|++|+|||+||+. +++.++++||+||+||+++||++
T Consensus 112 ~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp~~ 176 (386)
T KOG2641|consen 112 VFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKPFL 176 (386)
T ss_pred HHHHHHHHHcCChHHHHHHHhccC---------------CcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887632 12578999998888776 89999999999999999999999
Q ss_pred HHHHHHHHHhccccCCcccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 011495 199 ALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAKFLTFKSIVFLTWWQGIIVA 278 (484)
Q Consensus 199 ailaiIle~~GvY~eg~~~~~~~ylyl~iI~niS~~lALY~Lv~FY~a~ke~L~p~~Pl~KFl~IK~VVFltfwQgviIs 278 (484)
++++++++++|+|++|++++ |+|+++++|+|+++|+|||.+||+++||+|+||+|++||+|+|+|||++||||++++
T Consensus 177 ~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~vi~ 253 (386)
T KOG2641|consen 177 ALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIVLA 253 (386)
T ss_pred HHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCc---HHHHHHHhhhhHHHHHHHHHHHHHhhcccCccCcCC-ccccccceeeeccccCCCCCCccccccc
Q 011495 279 FLFSIGAFRGSL---AQELKTRIQDYIICIEMGIAAVVHLYVFPARPYKRG-ERCVRNVAVMTDYASLGTPPDPEEVKDS 354 (484)
Q Consensus 279 iL~~~Gvi~~~~---~~~~~~~iqd~LICiEM~i~Ailh~~aFp~~pY~~~-~~~~~~~~~~~d~~~~~~~~d~~~v~~~ 354 (484)
+|.+.|.+++.. .+..++++||++||+||+++|++|+||||++||... ++.. |+++.|.....+..+|.
T Consensus 254 ~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~-------~~~~~~~~~~~~~~~~~ 326 (386)
T KOG2641|consen 254 ILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSC-------DYRSVDMFSISSSLWDS 326 (386)
T ss_pred HHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhcccccccc-------ccccccccccchHHHHh
Confidence 999999998543 357899999999999999999999999999999883 3321 66666766666778887
Q ss_pred ccccceeccc-cccccc-cccCCccccceeec
Q 011495 355 ERTTKMRIAR-HDEREK-RLNFPQSVRDVVLG 384 (484)
Q Consensus 355 ~~~~~~~~~~-~~~~~~-~~~~~~s~~d~~~~ 384 (484)
.+|+...... ++.+.+ ....++|.+|+..+
T Consensus 327 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 358 (386)
T KOG2641|consen 327 LMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA 358 (386)
T ss_pred hcccCcccccccCCCcccccccccccCccccC
Confidence 7777766654 332322 27788888887766
No 3
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=75.40 E-value=18 Score=37.44 Aligned_cols=120 Identities=17% Similarity=0.135 Sum_probs=75.2
Q ss_pred ccchhhHHHHHHHHHHhh-ccCceeccccccCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhh
Q 011495 3 WRGILYVLFFLLTVVESS-SRSFKIWLPTVGAESDSVVAYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIG 81 (484)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~a~~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIR 81 (484)
|-+.+|-|.+...+++-. .+.+..- +.+.+--.|...+.+-++|...-+..|..++.-|-++|..|+-|+..-|
T Consensus 139 ~~~ll~~L~~~v~~~e~l~l~~ls~v-----~~re~~~lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~ 213 (296)
T KOG3979|consen 139 LYRLLRYLYFYVNVVENLFLLLLSAV-----SEREIGKLHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRW 213 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-----ccccCceeehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceee
Confidence 345667777777777763 3333332 2222222577666566666666788899999999999999999987744
Q ss_pred hhhhhhHHHHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011495 82 LILMVPVYALESFLS-LLNSDAAFNCEVIRDCYEAFALYCFERYLIACL 129 (484)
Q Consensus 82 IL~MvPIYAi~S~ls-L~~P~~aiy~d~iRd~YEAfvIY~F~~LLi~yl 129 (484)
=+...-++=+++..+ ..+++.-.||..- .|+.|+|+.+-.-.++.+
T Consensus 214 kil~~lv~~~~~~s~~~~~~~~~~~C~~~--ay~~fAi~ey~sV~~n~~ 260 (296)
T KOG3979|consen 214 KILTFLVMVFSFPSGAIFYIRHNVYCEPG--AYTLFAILEYSSVFLNSF 260 (296)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHHHHHHHH
Confidence 333333322222222 2245666777766 788999988876666554
No 4
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=59.81 E-value=68 Score=36.98 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.6
Q ss_pred hccCCCCCcchhhHHHH
Q 011495 249 DKLEPIKPLAKFLTFKS 265 (484)
Q Consensus 249 e~L~p~~Pl~KFl~IK~ 265 (484)
|...|-+|+.|=+..++
T Consensus 471 ELsnpNhPLLkkll~EA 487 (700)
T COG1480 471 ELSNPNHPLLKKLLTEA 487 (700)
T ss_pred HhcCCCcHHHHHHHhhC
Confidence 56678999999888764
No 5
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.69 E-value=19 Score=38.16 Aligned_cols=65 Identities=29% Similarity=0.458 Sum_probs=0.0
Q ss_pred cccccccCChhHHHHHHhhhhhhhHHHHHHHHHHHHHHHhccccCCcccccccchhhHHHHHHHHHHHHHH----HHHHH
Q 011495 169 CILRDWRLGPEFYNAVKIGIVQYMILKMICALLAMILQTFGVYGEGKFEWKYGYPYLAVVLNFSQTWALYC----LVQFY 244 (484)
Q Consensus 169 cc~~p~~lg~~fl~~~K~gVLQyvivKPl~ailaiIle~~GvY~eg~~~~~~~ylyl~iI~niS~~lALY~----Lv~FY 244 (484)
||.|-|| ++||.||+=+.+ +...++++|+-+. +.=...++++|++|+ +.+|=
T Consensus 205 vLFPLWP------~~mR~gvyY~si--g~~gfl~~IlvLa----------------IvRlILF~I~~il~~g~~g~W~FP 260 (372)
T KOG2927|consen 205 VLFPLWP------RRMRQGVYYLSI--GAGGFLAFILVLA----------------IVRLILFGITWILTGGKHGFWLFP 260 (372)
T ss_pred HhcccCc------HHHhcceeeeec--chhHHHHHHHHHH----------------HHHHHHHHHHHHHhCCCCceEecc
Q ss_pred Hhhhh--ccCCCCCc
Q 011495 245 SVTKD--KLEPIKPL 257 (484)
Q Consensus 245 ~a~ke--~L~p~~Pl 257 (484)
+.+.+ -|+-++|+
T Consensus 261 NL~eDvGfleSF~PL 275 (372)
T KOG2927|consen 261 NLTEDVGFLESFKPL 275 (372)
T ss_pred chhhhhhHHHhhccc
No 6
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=32.98 E-value=7.4e+02 Score=28.35 Aligned_cols=68 Identities=16% Similarity=0.324 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHhccc-cCC-cccccccchhhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcch
Q 011495 191 YMILKMICALLAMILQTFGVY-GEG-KFEWKYGYPYLAVVLNFSQTWALYCLVQFYSVTKDKLEPIKPLAK 259 (484)
Q Consensus 191 yvivKPl~ailaiIle~~GvY-~eg-~~~~~~~ylyl~iI~niS~~lALY~Lv~FY~a~ke~L~p~~Pl~K 259 (484)
.=++=-++.+.+++|-+.|.= +.+ +..|+++++--.++..+- .+..+++.-.|...|+-+-|++-+..
T Consensus 239 lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~~~~~Pl~P~~Lf~~ 308 (599)
T PF06609_consen 239 LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFGAPKDPLFPHRLFKD 308 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhccCCCCcCCHHHhcc
Confidence 334444555666666665542 222 357888887555554433 33444555555455666777655543
No 7
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=31.85 E-value=4.3e+02 Score=24.65 Aligned_cols=89 Identities=13% Similarity=0.096 Sum_probs=49.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccchhh-HHHHHHHHHHHHHH
Q 011495 40 AYSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAAF-NCEVIRDCYEAFAL 118 (484)
Q Consensus 40 ~h~~a~~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~ai-y~d~iRd~YEAfvI 118 (484)
.|.....+.-++..+...+...+..+...++++-..-...+|+.+.+-.....-.....++.... +...+....|=...
T Consensus 119 ~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ai~Ew~~~ 198 (215)
T PF10277_consen 119 VHYIGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLVISIICFISFIVFFILHNFYGAYSIFAIFEWVLV 198 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence 58877766666667777776666666665553444555667766554443333223333333322 35566666775555
Q ss_pred HHHHHHHHHh
Q 011495 119 YCFERYLIAC 128 (484)
Q Consensus 119 Y~F~~LLi~y 128 (484)
.++..++..+
T Consensus 199 ~~~~~f~~t~ 208 (215)
T PF10277_consen 199 FSNILFFLTF 208 (215)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 8
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=29.71 E-value=5.4e+02 Score=26.08 Aligned_cols=85 Identities=18% Similarity=0.118 Sum_probs=51.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccch---------hhHHHHHHH
Q 011495 41 YSWPVFTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDA---------AFNCEVIRD 111 (484)
Q Consensus 41 h~~a~~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~---------aiy~d~iRd 111 (484)
+....+.-|+-.++.+++......+...+-..|+.++.-+.|..-+|-.+..+++.+--... ....+...-
T Consensus 170 ~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 249 (330)
T PF03595_consen 170 IVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKAAVAFPPHGQILRGVADLFAL 249 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT-------------TT---HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhcccccccchhhhccccHHHHHHH
Confidence 45555556666666666666667777777777889999999999999999999999874311 123444444
Q ss_pred HHHHHHHHHHHHHH
Q 011495 112 CYEAFALYCFERYL 125 (484)
Q Consensus 112 ~YEAfvIY~F~~LL 125 (484)
..-++++..++..+
T Consensus 250 ~l~~~~~~~~~~~~ 263 (330)
T PF03595_consen 250 LLWGFALWWFFLAL 263 (330)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555544333
No 9
>PF13962 PGG: Domain of unknown function
Probab=29.35 E-value=3.8e+02 Score=23.22 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=19.6
Q ss_pred ccchhhHHHHHHHHHHh---hccCceecccc
Q 011495 3 WRGILYVLFFLLTVVES---SSRSFKIWLPT 30 (484)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 30 (484)
.|+++-....||-.+.- ...|+..|+-+
T Consensus 7 ~~~~llVvAtLIATvtF~A~~tpPGG~~~~~ 37 (113)
T PF13962_consen 7 TRNSLLVVATLIATVTFQAAFTPPGGYWQDD 37 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCccccc
Confidence 45666666666666655 68999999765
No 10
>PRK11056 hypothetical protein; Provisional
Probab=26.95 E-value=1.7e+02 Score=26.62 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccchh
Q 011495 49 SLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDAA 103 (484)
Q Consensus 49 g~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~a 103 (484)
.+|-++|+++|.|-.+|+..|.+.|+.=-.+..-.+.+=++.-..++---+|+..
T Consensus 37 SiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPeiG 91 (120)
T PRK11056 37 SIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEIG 91 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 5789999999999999999999999875555555555555554445545556543
No 11
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=26.92 E-value=7.4e+02 Score=25.79 Aligned_cols=133 Identities=17% Similarity=0.253 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHh--hhhhhhhhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Q 011495 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQKFL--IGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFER 123 (484)
Q Consensus 46 ~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~I--IRIL~MvPIYAi~S~lsL~~P~~aiy~d~iRd~YEAfvIY~F~~ 123 (484)
++|++.+++++.++... -.-+.+|+-|-++.-+ .-|+-|+| ++.+.+++..-- ..+- .+=+...
T Consensus 80 iva~~t~~i~v~~~~~~-aYafSR~rF~GRk~~L~~~LilqMfP--~~~aliAlY~l~-----~~lg------llnt~~g 145 (282)
T COG3833 80 IVALITAAITVALVTLA-AYAFSRYRFKGRKYLLKFFLILQMFP--GVAALIALYVLL-----KLLG------LLNTLWG 145 (282)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhccccHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----HHhc------ChhhHHH
Confidence 67777777777776544 4467778888655544 34556666 333333332100 0000 2223556
Q ss_pred HHHHhcCChhHHHHHHhhhccccCCCchhhhhccCCccccCCccccccccccCChhHHHHHHhhhhhhhHHHHHHHHHHH
Q 011495 124 YLIACLGGEERTIEFMESQTIISTSSPLLEESYTFGVVEHPCPLNCILRDWRLGPEFYNAVKIGIVQYMILKMICALLAM 203 (484)
Q Consensus 124 LLi~ylGGe~~~i~~L~~~~~~~~~~~ll~~~~~~~~~~h~~P~~cc~~p~~lg~~fl~~~K~gVLQyvivKPl~ailai 203 (484)
|.+.|.||--.+-..+-..+ -++..+.+|++..- .|-..++....=+ .++.||+.+++++
T Consensus 146 Lil~Y~gG~ip~nt~l~Kgy-~DtIP~sldEaA~i-----------------DGAt~~q~F~~Iv--LPLs~P~lavvaL 205 (282)
T COG3833 146 LILAYLGGAIPMNTWLIKGY-FDTIPKSLDEAAKI-----------------DGATRFQIFRRIL--LPLSKPILAVVAL 205 (282)
T ss_pred HHHHHhcCchHHHHHHHHhh-hhcCCccHHHHHhh-----------------cCcchHHHHHHHH--HhhhhhHHHHHHH
Confidence 78889998765544433222 22333334432110 0111112211111 4788999998887
Q ss_pred HHHHhccccC
Q 011495 204 ILQTFGVYGE 213 (484)
Q Consensus 204 Ile~~GvY~e 213 (484)
..-. |-|+|
T Consensus 206 ~~Fi-Gp~~d 214 (282)
T COG3833 206 LAFI-GPFGD 214 (282)
T ss_pred HHHH-hHHHH
Confidence 5543 44443
No 12
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=26.84 E-value=5.2e+02 Score=24.00 Aligned_cols=52 Identities=25% Similarity=0.321 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhh--hhhhhhHHHHHHHHHhhccch
Q 011495 47 TASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIG--LILMVPVYALESFLSLLNSDA 102 (484)
Q Consensus 47 iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIR--IL~MvPIYAi~S~lsL~~P~~ 102 (484)
..++..+++.++|+..|+ -|.|-..|..+.+ +++|+=.|++..+.++-.+..
T Consensus 55 ~l~il~~l~~~lal~aIF----lyKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~ 108 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIF----LYKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGE 108 (149)
T ss_pred HHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 567778888889999888 4788889999977 677777777776666655543
No 13
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=25.69 E-value=1.3e+02 Score=26.01 Aligned_cols=40 Identities=33% Similarity=0.413 Sum_probs=24.6
Q ss_pred hhhHHhhhhhhhhhHHHHHHHHHhhccchhhHHHHHHHHHHHH
Q 011495 74 EEQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAF 116 (484)
Q Consensus 74 ~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~aiy~d~iRd~YEAf 116 (484)
+.|+.++ ...|+|++.++-++.--+..-=+-+.+||=||+
T Consensus 31 ~~~~~ii---~~lP~~~Lv~fG~Ysl~~lgy~v~tFnDcpeA~ 70 (91)
T PF08285_consen 31 EPQQEII---PYLPFYALVSFGCYSLFTLGYGVATFNDCPEAA 70 (91)
T ss_pred hhHHHHH---HHhhHHHHHHHHHHHHHHHHHhhhccCCCHHHH
Confidence 4455554 467999999887765544444444555555544
No 14
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=25.26 E-value=89 Score=26.54 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhh
Q 011495 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLI 83 (484)
Q Consensus 46 ~iag~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL 83 (484)
.+.+..+++-+.+-.|.+. +..|.+-..||.|-|.+
T Consensus 8 ~iialiv~~iiaIvvW~iv--~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 8 AIIALIVALIIAIVVWTIV--YIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH--------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHH
Confidence 3445555555566667775 88999999999987754
No 15
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=24.16 E-value=1.8e+02 Score=24.17 Aligned_cols=39 Identities=21% Similarity=0.335 Sum_probs=27.3
Q ss_pred hhHHhhhhhhhhhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011495 75 EQKFLIGLILMVPVYALESFLSLLNSDAAFNCEVIRDCYEAFALYCFERYLIA 127 (484)
Q Consensus 75 ~Qr~IIRIL~MvPIYAi~S~lsL~~P~~aiy~d~iRd~YEAfvIY~F~~LLi~ 127 (484)
.+....|+++|+|.+-+.+..+. .-.+.++.+|+..|+.
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~--------------~~~~~~~~q~~~~L~t 40 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASI--------------VLGVLVLIQWFAILFT 40 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHc
Confidence 35677999999999888776655 4455666666655543
No 16
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.72 E-value=2.2e+02 Score=25.81 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhHHhhhhhhhhhHHHHHHHHHhhccch
Q 011495 49 SLFVLVALILSTYLIIEHLAAYNQPEEQKFLIGLILMVPVYALESFLSLLNSDA 102 (484)
Q Consensus 49 g~f~llai~iSl~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lsL~~P~~ 102 (484)
.+|-++|++++.|-.+|+..|.+.|+.=-.+..-.+.+=+++-..++---+|+.
T Consensus 37 SiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPei 90 (117)
T PF07226_consen 37 SIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEI 90 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhh
Confidence 578999999999999999999999986444444444444444444444444543
No 17
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=23.15 E-value=51 Score=28.24 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhhh
Q 011495 46 FTASLFVLVALILSTYLIIEHLAAYNQPEEQ 76 (484)
Q Consensus 46 ~iag~f~llai~iSl~~I~~HL~~Yt~P~~Q 76 (484)
..+|+.+++++++.+++++..+.+|-+|+..
T Consensus 20 ~~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~ 50 (96)
T PF13850_consen 20 SSGGIISIITIVLIVILFISELYSYLSGEIK 50 (96)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHccccee
Confidence 3579999999999999999999999999754
No 18
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=22.93 E-value=1.2e+02 Score=29.29 Aligned_cols=52 Identities=23% Similarity=0.394 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhh-hHH---hhhhhhhhhHHHHHHHHHhh
Q 011495 47 TASLFVLVALILSTYLIIEHLAAYNQPEE-QKF---LIGLILMVPVYALESFLSLL 98 (484)
Q Consensus 47 iag~f~llai~iSl~~I~~HL~~Yt~P~~-Qr~---IIRIL~MvPIYAi~S~lsL~ 98 (484)
++...+.+|-.+.-+-+..-+.+++.-.. =|+ ++-.++++|+|+|+++.=++
T Consensus 10 ~~~~~~~lsgC~Gsfalt~kl~~~N~~~vdnKf~r~lvf~~~i~PVYgi~~~aD~l 65 (176)
T PF11810_consen 10 LLAGSLSLSGCMGSFALTNKLYKWNKGVVDNKFVRELVFLFLISPVYGIAGLADLL 65 (176)
T ss_pred HHHHHHHhccccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 33334444555555667777777773322 222 22227789999998876654
Done!