BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011497
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 157/488 (32%), Positives = 262/488 (53%), Gaps = 30/488 (6%)
Query: 2 LSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH----DVNKILFFIYS 57
L SSGTS K++P+ + L + LR KH + K + F+++
Sbjct: 99 LLSSGTSGGAQKMMPWNNKYLDNLTF-------IYDLRMQVITKHVKGVEEGKGMMFLFT 151
Query: 58 DNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGL 115
++ T +G +V +S F N + ++SP EVI+ N +YCHLLCGL
Sbjct: 152 KQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGL 211
Query: 116 RNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGP 175
+ + S +A ++ A ++ WE+LC ++ +G+ +T++ ++SV VLGGP
Sbjct: 212 VQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGGP 271
Query: 176 QPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDY 235
+P+L+ I IC +++W GI +LWPN +YI+ V TGSM QY + YY ++P++ Y
Sbjct: 272 RPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTY 331
Query: 236 FASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFD-MEKNEAVGEETVDFSGVEIGKM 294
+SE GINLD P+ + +P +YFEF+P D +KN+ VD V++G
Sbjct: 332 GSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDV-----VDLEDVKLGCT 386
Query: 295 YEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAP---KSSFEIISERDLMSAMES 351
YE VVT + G YR R+GDIV V FYN++PQ +FV R + +E DL A+
Sbjct: 387 YEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446
Query: 352 FQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI--REGCTKLRDSVAI----LRRCCS 405
+++L + +++ +F Y + + P ++++E+ +EG K + L CC
Sbjct: 447 AKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCL 505
Query: 406 SLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNRE 464
+E++ ++YK R + G I PL + +V+ GTFD L+ I +GA QYK P+ +++ +
Sbjct: 506 VMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGK 565
Query: 465 IVEFMEGC 472
++ +E C
Sbjct: 566 ALQVLETC 573
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 268 bits (685), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 255/478 (53%), Gaps = 14/478 (2%)
Query: 2 LSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKT 61
L+SSGTS+ + KL+P L + ++ V L+ P D K L+F++ ++T
Sbjct: 105 LTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVM---NLYVPGLDKGKGLYFLFVKSET 161
Query: 62 TTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYE 119
T G + + S + + ++SP E I+ ++ MY +LCG+ +
Sbjct: 162 RTPGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERK 221
Query: 120 FIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDL 179
+ + + +A GL+ A F + W QL D+ G IT+ ++R+ V VL P P+L
Sbjct: 222 QVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLK-PDPEL 280
Query: 180 SKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASE 239
+ + C + NW GI +++WPN +Y+ + TG+M+QY + YY+G +P+ Y +SE
Sbjct: 281 ADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSE 340
Query: 240 CYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK---NEAVGEETVDFSGVEIGKMYE 296
CY G+NL+ P + ++P AYFEFLP + + VD + VE+GK YE
Sbjct: 341 CYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYE 400
Query: 297 VVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAP---KSSFEIISERDLMSAMESFQ 353
+V+TTY G YRYR+GDI++V F+NS+PQ FV R + E +L A+++
Sbjct: 401 LVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNAS 460
Query: 354 MMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGS 413
+LR V +VE+ + + ++ P +I+ E+ + S +L +CC ++E++ S
Sbjct: 461 KLLREV-NTSVVEYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNS 519
Query: 414 IYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFME 470
+Y+ R I PL + +VK GTF+ L+ AI +GA +QYK P+ V I+E ++
Sbjct: 520 VYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLD 577
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/489 (31%), Positives = 254/489 (51%), Gaps = 30/489 (6%)
Query: 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH----DVNKILFFIY 56
L SSGTS K P+ + L + LR KH + K F++
Sbjct: 98 FLLSSGTSGGAQKXXPWNNKYLDNLTF-------IYDLRXQVITKHVKGVEEGKGXXFLF 150
Query: 57 SDNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCG 114
+ ++ T +G +V +S F N + ++SP EVI+ N +YCHLLCG
Sbjct: 151 TKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCG 210
Query: 115 LRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGG 174
L + + S +A + A ++ WE+LC ++ +G+ +T++ ++SV VLGG
Sbjct: 211 LVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGG 270
Query: 175 PQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGD 234
P+P+L+ I IC +++W GI +LWPN +YI+ V TGS QY + YY ++P++
Sbjct: 271 PRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSXGQYVPXLNYYCNDLPLVSTT 330
Query: 235 YFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFD-MEKNEAVGEETVDFSGVEIGK 293
Y +SE GINLD P+ + P +YFEF+P D +KN+ VD V++G
Sbjct: 331 YGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGDKNDV-----VDLEDVKLGC 385
Query: 294 MYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAP---KSSFEIISERDLMSAME 350
YE VVT + G YR R+GDIV V FYN++PQ +FV R + +E DL A+
Sbjct: 386 TYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVS 445
Query: 351 SFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI--REGCTKLRDSVAI----LRRCC 404
+++L + +++ +F Y + + P ++++E+ +EG K + L CC
Sbjct: 446 QAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCC 504
Query: 405 SSLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNR 463
E++ ++YK R + G I PL + +V+ GTFD L I +GA QYK P+ +++
Sbjct: 505 LVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLXDFFISQGASTGQYKTPRCIKSG 564
Query: 464 EIVEFMEGC 472
+ ++ +E C
Sbjct: 565 KALQVLETC 573
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 251 bits (640), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 157/478 (32%), Positives = 258/478 (53%), Gaps = 27/478 (5%)
Query: 4 SSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTT 63
SSGTS +PK IP+ D + + + A R FP D K L FI+S + +
Sbjct: 106 SSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRDFP-IDDNGKALQFIFSSKQYIS 162
Query: 64 KAGFKVMAASAFPLQGSSNENLSQLIRH-----SSPREVIVGSNFQHQMYCHLLCGLRNY 118
G V A+ + N N ++ SP EVI + +YCHLL G+
Sbjct: 163 TGGVPVGTATTNVYR---NPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFR 219
Query: 119 EFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPD 178
+ + +F+ +A GL+ AF FE WE++ D+++G IT ++R ++ ++L P P+
Sbjct: 220 DQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLT-PNPE 278
Query: 179 LSKRIRSICGE-SNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237
L++ IR+ C SNW G+ L+PN +Y+ + TGSM Y K+++YAG++P++ DY +
Sbjct: 279 LAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDYGS 338
Query: 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEV 297
SE ++ N+ P+ F ++P YFEFLP E E E+ V + V+IG+ YEV
Sbjct: 339 SEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVS-ETGEG-EEKPVGLTQVKIGEEYEV 396
Query: 298 VVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAP---KSSFEIISERDLMSAMESFQM 354
V+T Y G YRYRLGD+VKV+ FYN++PQ++F+ R + + +ERDL ++ES
Sbjct: 397 VITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAK 456
Query: 355 MLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GS 413
L +E+++F+ Y ++ + P IF EI + +L+ CC+ L+ AF +
Sbjct: 457 RLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEISGETNE-----DVLQDCCNCLDRAFIDA 510
Query: 414 IYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVR--NREIVEFM 469
Y R I L + +V GTF ++ + + G+ A Q+K P+ V+ N ++++ +
Sbjct: 511 GYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQIL 568
>pdb|3L2E|A Chain A, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|C Chain C, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp
Length = 374
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 177 PDLSKRIRSICGESNWSGIFSKLW----PN-VRYIKCVTTGSMSQYCSKIKYYAGEVPVL 231
PDLSK + + + ++ K W PN V + KC+ TG + K+Y + +
Sbjct: 16 PDLSKHNNVMASQLTYE-LYEKYWDKVTPNGVTFDKCIQTGVDN---PGNKFYGKKTGCV 71
Query: 232 GGDYFASECY 241
GD ++ ECY
Sbjct: 72 FGDEYSYECY 81
>pdb|3QAN|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
pdb|3QAN|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Halodurans
Length = 538
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 258 VMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 317
VML + F F +E N EE + E+GK Y +++ R + +
Sbjct: 1 VMLQPYKHEPFTDFTVEANRKAFEEALGLVEKELGKEYPLIINGERVTTEDK-------I 53
Query: 318 DFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNV 359
+N + + + V K++ + ++E+ + SA E+FQ RNV
Sbjct: 54 QSWNPARKDQLVGSVSKAN-QDLAEKAIQSADEAFQ-TWRNV 93
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 29 IAIQGSVAILRRLFPPKHDVNKILFFIYSDNKT----TTKAGFKVMAASAFPLQGSSNEN 84
I +QGSV L P ++ +I +D+ + G +VMA + P + S+ E
Sbjct: 22 IQLQGSVFATETLSSPP-----LISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEE 76
Query: 85 LSQLIRHSS 93
+QL+R SS
Sbjct: 77 ANQLLRDSS 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,767,398
Number of Sequences: 62578
Number of extensions: 567667
Number of successful extensions: 1141
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 16
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)