Query 011497
Match_columns 484
No_of_seqs 142 out of 596
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:01:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02620 indole-3-acetic acid- 100.0 3E-113 7E-118 916.1 47.5 474 1-481 106-598 (612)
2 PLN02247 indole-3-acetic acid- 100.0 3E-112 6E-117 911.0 47.5 476 1-481 94-595 (606)
3 PLN02249 indole-3-acetic acid- 100.0 9E-104 2E-108 852.1 48.5 477 1-482 105-588 (597)
4 PF03321 GH3: GH3 auxin-respon 100.0 5.1E-98 1E-102 805.1 34.8 430 1-466 85-527 (528)
5 COG1541 PaaK Coenzyme F390 syn 99.7 8.7E-16 1.9E-20 159.8 24.2 201 214-463 223-435 (438)
6 TIGR03335 F390_ftsA coenzyme F 99.7 3.3E-15 7.1E-20 159.1 22.4 206 201-440 204-432 (445)
7 TIGR02155 PA_CoA_ligase phenyl 99.5 9.9E-12 2.1E-16 131.1 26.5 190 214-439 208-410 (422)
8 TIGR02304 aden_form_hyp probab 99.4 1.8E-10 3.9E-15 122.0 24.3 134 214-386 225-377 (430)
9 PRK00174 acetyl-CoA synthetase 99.0 4E-07 8.6E-12 101.1 28.6 227 200-472 366-632 (637)
10 TIGR02188 Ac_CoA_lig_AcsA acet 98.9 1.1E-06 2.4E-11 97.3 29.8 226 201-471 358-624 (625)
11 PLN02654 acetate-CoA ligase 98.7 1.2E-05 2.5E-10 90.2 30.0 156 289-471 475-662 (666)
12 PRK07529 AMP-binding domain pr 98.7 9E-07 2E-11 98.4 20.5 133 200-351 332-489 (632)
13 PRK06187 long-chain-fatty-acid 98.7 3E-06 6.5E-11 90.6 23.8 159 199-388 279-468 (521)
14 PRK09274 peptide synthase; Pro 98.7 4.2E-06 9.2E-11 90.9 24.8 140 200-352 287-465 (552)
15 PRK04319 acetyl-CoA synthetase 98.7 4.6E-06 1E-10 91.2 24.9 129 200-352 322-477 (570)
16 TIGR01734 D-ala-DACP-lig D-ala 98.7 5.1E-06 1.1E-10 88.8 24.2 132 199-352 256-418 (502)
17 PRK07788 acyl-CoA synthetase; 98.6 2.6E-06 5.5E-11 92.7 21.1 129 200-352 322-472 (549)
18 PRK10524 prpE propionyl-CoA sy 98.6 2.5E-05 5.5E-10 86.5 28.5 229 201-471 355-625 (629)
19 TIGR02316 propion_prpE propion 98.6 4.3E-05 9.3E-10 84.9 28.2 130 200-352 353-517 (628)
20 COG0365 Acs Acyl-coenzyme A sy 98.4 6.2E-05 1.3E-09 81.7 23.9 186 199-433 288-501 (528)
21 PRK10252 entF enterobactin syn 98.3 2.3E-05 4.9E-10 93.9 20.2 129 201-352 717-882 (1296)
22 PRK06060 acyl-CoA synthetase; 98.3 2.4E-05 5.1E-10 88.1 19.1 130 200-352 259-410 (705)
23 PLN02387 long-chain-fatty-acid 98.3 4.1E-05 8.9E-10 86.3 20.9 131 201-351 420-580 (696)
24 PTZ00237 acetyl-CoA synthetase 98.3 3E-05 6.4E-10 86.7 19.6 229 201-471 380-643 (647)
25 PRK10946 entE enterobactin syn 98.3 0.00014 3.1E-09 78.9 23.7 128 200-351 299-453 (536)
26 TIGR03443 alpha_am_amid L-amin 98.3 1.1E-05 2.4E-10 97.4 16.3 42 307-352 679-723 (1389)
27 PRK08279 long-chain-acyl-CoA s 98.3 9E-05 2E-09 81.6 22.1 139 200-351 313-483 (600)
28 PLN02860 o-succinylbenzoate-Co 98.2 3.9E-05 8.5E-10 83.9 17.2 58 291-352 382-459 (563)
29 PRK03584 acetoacetyl-CoA synth 98.2 0.0002 4.3E-09 79.9 22.5 226 201-471 383-648 (655)
30 PRK12467 peptide synthase; Pro 98.2 3.6E-05 7.9E-10 101.4 18.9 118 215-351 785-934 (3956)
31 TIGR03205 pimA dicarboxylate-- 98.2 6.5E-05 1.4E-09 81.5 18.0 158 200-388 311-494 (541)
32 COG1022 FAA1 Long-chain acyl-C 98.2 1.1E-05 2.5E-10 88.7 12.1 128 208-372 357-506 (613)
33 PLN02736 long-chain acyl-CoA s 98.2 6.3E-05 1.4E-09 83.9 18.1 119 216-351 391-532 (651)
34 PRK12316 peptide synthase; Pro 98.1 4.3E-05 9.3E-10 102.6 18.4 130 201-352 2261-2426(5163)
35 PRK07514 malonyl-CoA synthase; 98.1 0.00011 2.5E-09 78.5 18.4 132 198-352 266-422 (504)
36 PRK09088 acyl-CoA synthetase; 98.1 6.7E-05 1.4E-09 80.1 15.8 128 201-351 252-405 (488)
37 PRK06164 acyl-CoA synthetase; 98.1 0.00013 2.8E-09 79.0 18.1 134 227-387 319-477 (540)
38 PLN02574 4-coumarate--CoA liga 98.1 0.00012 2.5E-09 80.1 17.8 131 200-351 318-474 (560)
39 PRK05605 long-chain-fatty-acid 98.1 7.3E-05 1.6E-09 81.7 16.0 159 200-388 335-518 (573)
40 PRK13295 cyclohexanecarboxylat 98.1 8.6E-05 1.9E-09 80.7 16.5 155 200-387 311-491 (547)
41 PRK07867 acyl-CoA synthetase; 98.0 0.00016 3.4E-09 78.6 17.3 122 214-352 278-426 (529)
42 PRK04813 D-alanine--poly(phosp 98.0 0.00022 4.7E-09 76.1 17.8 132 200-352 259-420 (503)
43 PRK08180 feruloyl-CoA synthase 98.0 0.00023 5E-09 78.8 18.2 44 307-350 441-490 (614)
44 PRK07786 long-chain-fatty-acid 98.0 0.0002 4.4E-09 77.8 17.3 117 215-351 304-443 (542)
45 PRK06155 crotonobetaine/carnit 98.0 0.00024 5.1E-09 77.4 17.8 128 201-352 294-445 (542)
46 PRK06334 long chain fatty acid 98.0 8.3E-05 1.8E-09 81.0 14.1 132 200-352 298-455 (539)
47 PRK05677 long-chain-fatty-acid 98.0 0.00018 3.9E-09 78.6 16.5 128 200-351 325-477 (562)
48 PRK06145 acyl-CoA synthetase; 98.0 0.00025 5.4E-09 75.8 17.2 131 200-352 263-418 (497)
49 PRK07768 long-chain-fatty-acid 98.0 0.00045 9.7E-09 75.0 19.1 128 289-438 381-527 (545)
50 PRK07769 long-chain-fatty-acid 98.0 0.00032 6.9E-09 77.9 18.1 60 288-352 412-508 (631)
51 PRK08974 long-chain-fatty-acid 97.9 0.00031 6.6E-09 76.6 17.5 128 201-352 325-477 (560)
52 PRK08314 long-chain-fatty-acid 97.9 0.00041 8.9E-09 75.1 18.3 131 200-352 304-461 (546)
53 PRK12406 long-chain-fatty-acid 97.9 0.00058 1.3E-08 73.4 18.6 127 201-351 271-423 (509)
54 PRK07059 Long-chain-fatty-acid 97.9 0.00036 7.8E-09 76.0 17.2 124 208-352 331-480 (557)
55 TIGR03208 cyc_hxne_CoA_lg cycl 97.9 0.00027 5.8E-09 76.7 16.0 129 200-352 309-462 (538)
56 TIGR01217 ac_ac_CoA_syn acetoa 97.9 0.00049 1.1E-08 77.0 18.4 151 291-471 461-646 (652)
57 PLN02330 4-coumarate--CoA liga 97.9 0.00032 7E-09 76.3 16.1 120 215-352 317-462 (546)
58 PRK08316 acyl-CoA synthetase; 97.9 0.00031 6.6E-09 75.4 15.7 119 215-352 300-440 (523)
59 TIGR02262 benz_CoA_lig benzoat 97.9 0.00078 1.7E-08 72.4 18.8 117 216-352 293-429 (508)
60 PRK13382 acyl-CoA synthetase; 97.9 0.00042 9E-09 75.4 16.8 129 200-352 311-461 (537)
61 TIGR01733 AA-adenyl-dom amino 97.9 0.00014 3E-09 75.3 12.4 131 200-351 233-399 (408)
62 PRK07656 long-chain-fatty-acid 97.9 0.00052 1.1E-08 73.4 17.1 118 215-351 295-436 (513)
63 PRK12583 acyl-CoA synthetase; 97.9 0.00069 1.5E-08 73.5 18.1 158 200-387 316-500 (558)
64 PRK05850 acyl-CoA synthetase; 97.8 0.00055 1.2E-08 74.9 17.4 126 288-438 391-550 (578)
65 PRK05852 acyl-CoA synthetase; 97.8 0.00057 1.2E-08 74.1 17.1 134 199-351 293-452 (534)
66 PRK08315 AMP-binding domain pr 97.8 0.00069 1.5E-08 73.6 17.8 133 200-352 314-472 (559)
67 PRK12476 putative fatty-acid-- 97.8 0.00068 1.5E-08 75.1 17.5 128 288-438 423-588 (612)
68 PRK13390 acyl-CoA synthetase; 97.8 0.0011 2.4E-08 71.1 18.1 126 201-351 270-423 (501)
69 PRK06710 long-chain-fatty-acid 97.8 0.00047 1E-08 75.2 15.4 129 201-352 323-476 (563)
70 TIGR02275 DHB_AMP_lig 2,3-dihy 97.7 0.00079 1.7E-08 72.8 16.3 129 201-352 299-453 (527)
71 PLN02246 4-coumarate--CoA liga 97.7 0.00088 1.9E-08 72.6 16.7 129 201-351 298-456 (537)
72 PLN03051 acyl-activating enzym 97.7 0.0018 3.9E-08 69.8 18.8 41 307-351 358-401 (499)
73 PRK06839 acyl-CoA synthetase; 97.7 0.00088 1.9E-08 71.4 16.2 129 200-352 263-416 (496)
74 TIGR03098 ligase_PEP_1 acyl-Co 97.7 0.0016 3.4E-08 69.8 18.1 119 215-352 288-439 (515)
75 PRK13383 acyl-CoA synthetase; 97.7 0.00098 2.1E-08 71.9 16.5 129 200-351 291-440 (516)
76 PRK07798 acyl-CoA synthetase; 97.7 0.0017 3.6E-08 69.8 17.9 130 201-352 296-453 (533)
77 PRK08633 2-acyl-glycerophospho 97.7 0.00097 2.1E-08 78.9 17.4 130 200-352 897-1064(1146)
78 PRK08276 long-chain-fatty-acid 97.7 0.0022 4.8E-08 68.7 18.4 128 200-352 261-414 (502)
79 PRK12467 peptide synthase; Pro 97.7 0.00031 6.6E-09 92.9 13.8 131 200-352 3350-3516(3956)
80 PRK07638 acyl-CoA synthetase; 97.7 0.00046 1E-08 73.7 12.9 126 208-352 258-406 (487)
81 PRK05851 long-chain-fatty-acid 97.7 0.00085 1.9E-08 72.7 15.0 59 289-352 367-440 (525)
82 PRK12492 long-chain-fatty-acid 97.7 0.0021 4.5E-08 70.2 18.2 116 215-351 347-485 (562)
83 PRK07868 acyl-CoA synthetase; 97.6 0.0014 3E-08 77.0 17.4 139 201-352 720-881 (994)
84 PRK08751 putative long-chain f 97.6 0.0013 2.9E-08 71.5 16.1 130 200-352 328-482 (560)
85 PRK09192 acyl-CoA synthetase; 97.6 0.0019 4.1E-08 70.9 17.2 59 289-352 406-483 (579)
86 PRK13388 acyl-CoA synthetase; 97.6 0.0022 4.7E-08 69.9 17.3 123 215-351 277-424 (540)
87 PRK07787 acyl-CoA synthetase; 97.6 0.0024 5.3E-08 68.0 17.3 129 201-351 241-395 (471)
88 PRK06188 acyl-CoA synthetase; 97.6 0.0025 5.5E-08 68.7 17.5 129 200-351 280-437 (524)
89 PLN02614 long-chain acyl-CoA s 97.6 0.00088 1.9E-08 75.2 14.2 131 201-351 386-541 (666)
90 PRK05691 peptide synthase; Val 97.6 0.00075 1.6E-08 90.0 15.6 130 201-352 3983-4147(4334)
91 PRK13391 acyl-CoA synthetase; 97.6 0.0035 7.7E-08 67.4 18.2 126 201-352 275-427 (511)
92 KOG1175 Acyl-CoA synthetase [L 97.6 0.011 2.3E-07 65.3 21.5 248 177-472 339-623 (626)
93 PRK07470 acyl-CoA synthetase; 97.5 0.0022 4.9E-08 69.2 16.2 59 289-351 361-438 (528)
94 COG0318 CaiC Acyl-CoA syntheta 97.5 0.0041 8.9E-08 68.0 17.8 126 207-352 294-446 (534)
95 PRK08308 acyl-CoA synthetase; 97.5 0.0023 4.9E-08 67.1 15.2 56 291-352 278-336 (414)
96 PRK06178 acyl-CoA synthetase; 97.5 0.0034 7.3E-08 68.6 16.6 119 215-351 341-486 (567)
97 PF00501 AMP-binding: AMP-bind 97.5 0.00054 1.2E-08 71.3 9.9 117 199-334 275-412 (417)
98 PLN03102 acyl-activating enzym 97.5 0.0046 1E-07 68.0 17.6 57 292-352 390-465 (579)
99 PRK12316 peptide synthase; Pro 97.4 0.00073 1.6E-08 91.2 13.0 130 200-352 3310-3469(5163)
100 PRK07445 O-succinylbenzoic aci 97.4 0.0016 3.5E-08 69.5 13.3 58 291-352 298-369 (452)
101 PRK05857 acyl-CoA synthetase; 97.4 0.0053 1.1E-07 66.8 17.2 61 287-351 367-446 (540)
102 PRK07824 O-succinylbenzoic aci 97.4 0.0024 5.2E-08 65.5 13.8 41 307-352 235-278 (358)
103 PRK07008 long-chain-fatty-acid 97.4 0.0053 1.2E-07 66.7 17.2 55 293-351 383-453 (539)
104 PRK05620 long-chain-fatty-acid 97.4 0.0074 1.6E-07 66.1 18.4 40 308-351 432-474 (576)
105 PRK03640 O-succinylbenzoic aci 97.4 0.0033 7.2E-08 66.8 15.2 59 289-351 327-404 (483)
106 PRK08008 caiC putative crotono 97.4 0.0052 1.1E-07 66.1 16.6 117 215-351 301-442 (517)
107 TIGR01923 menE O-succinylbenzo 97.4 0.0049 1.1E-07 64.5 15.9 55 293-351 291-364 (436)
108 PRK08043 bifunctional acyl-[ac 97.3 0.0054 1.2E-07 69.4 16.5 42 307-352 592-636 (718)
109 PLN03052 acetate--CoA ligase; 97.3 0.014 2.9E-07 66.5 19.5 42 307-352 590-634 (728)
110 PRK05691 peptide synthase; Val 97.3 0.0035 7.6E-08 83.9 16.8 131 200-352 1387-1550(4334)
111 PRK06814 acylglycerophosphoeth 97.3 0.0055 1.2E-07 72.8 17.0 42 307-352 1011-1055(1140)
112 PRK06087 short chain acyl-CoA 97.3 0.0075 1.6E-07 65.5 16.5 127 201-351 302-454 (547)
113 PRK06018 putative acyl-CoA syn 97.3 0.01 2.2E-07 64.5 17.1 55 293-351 383-454 (542)
114 KOG1176 Acyl-CoA synthetase [L 97.2 0.0094 2E-07 65.2 15.7 131 200-352 298-453 (537)
115 KOG1179 Very long-chain acyl-C 97.1 0.023 5E-07 61.3 17.3 228 208-463 362-626 (649)
116 KOG1177 Long chain fatty acid 97.1 0.0011 2.5E-08 69.7 7.3 59 289-351 427-505 (596)
117 PLN02861 long-chain-fatty-acid 97.1 0.0028 6.1E-08 71.0 10.9 57 291-351 462-538 (660)
118 PTZ00342 acyl-CoA synthetase; 97.0 0.0076 1.6E-07 68.7 12.9 129 201-351 461-615 (746)
119 PF14535 AMP-binding_C_2: AMP- 96.9 0.0011 2.3E-08 55.8 4.3 84 337-439 1-84 (96)
120 PRK08162 acyl-CoA synthetase; 96.8 0.042 9.2E-07 59.5 16.8 56 293-352 387-461 (545)
121 PLN02430 long-chain-fatty-acid 96.7 0.01 2.2E-07 66.7 11.1 58 290-351 461-538 (660)
122 PTZ00216 acyl-CoA synthetase; 96.6 0.01 2.2E-07 67.0 10.1 58 290-351 503-581 (700)
123 PRK09029 O-succinylbenzoic aci 96.5 0.047 1E-06 57.9 13.9 41 307-352 333-376 (458)
124 PRK12582 acyl-CoA synthetase; 96.3 0.019 4.1E-07 63.8 10.2 56 291-346 420-496 (624)
125 PLN02479 acetate-CoA ligase 96.0 0.039 8.5E-07 60.4 10.4 55 293-351 401-474 (567)
126 COG1021 EntE Peptide arylation 95.9 0.02 4.3E-07 59.5 7.1 117 215-352 319-459 (542)
127 TIGR02372 4_coum_CoA_lig 4-cou 95.2 0.088 1.9E-06 55.4 9.2 42 307-352 276-320 (386)
128 PF04443 LuxE: Acyl-protein sy 94.3 0.37 8E-06 50.4 11.1 102 215-341 242-359 (365)
129 KOG1256 Long-chain acyl-CoA sy 93.2 0.5 1.1E-05 52.7 10.0 133 197-351 415-572 (691)
130 KOG1180 Acyl-CoA synthetase [L 90.1 2.9 6.2E-05 45.7 11.2 150 210-374 408-574 (678)
131 COG1020 EntF Non-ribosomal pep 85.6 4.5 9.7E-05 44.9 10.0 57 290-350 563-639 (642)
132 PRK09188 serine/threonine prot 81.5 8.8 0.00019 40.2 9.5 40 307-352 210-252 (365)
133 PF07311 Dodecin: Dodecin; In 60.6 21 0.00045 28.0 4.8 49 338-387 13-61 (66)
134 COG1021 EntE Peptide arylation 58.6 4.1 9E-05 42.9 0.8 19 1-20 194-212 (542)
135 TIGR02372 4_coum_CoA_lig 4-cou 55.7 9 0.0002 40.2 2.8 21 2-23 101-121 (386)
136 PF11454 DUF3016: Protein of u 55.3 19 0.00041 32.5 4.3 43 289-333 47-95 (141)
137 PRK07824 O-succinylbenzoic aci 54.0 7.6 0.00017 39.5 1.9 20 2-22 41-60 (358)
138 PRK07445 O-succinylbenzoic aci 53.7 8.9 0.00019 40.8 2.4 20 2-22 126-145 (452)
139 TIGR01923 menE O-succinylbenzo 49.5 10 0.00022 39.4 2.0 20 2-22 117-136 (436)
140 PF00501 AMP-binding: AMP-bind 47.6 9.6 0.00021 39.4 1.5 22 2-24 161-182 (417)
141 PRK07638 acyl-CoA synthetase; 45.7 12 0.00025 39.9 1.8 20 2-22 149-168 (487)
142 PRK06334 long chain fatty acid 45.5 15 0.00032 40.0 2.5 21 2-23 189-209 (539)
143 PRK08751 putative long-chain f 45.3 14 0.00031 40.0 2.4 20 2-22 214-233 (560)
144 PRK07470 acyl-CoA synthetase; 45.3 8.3 0.00018 41.5 0.6 20 2-22 169-188 (528)
145 PRK09088 acyl-CoA synthetase; 45.3 12 0.00026 39.7 1.8 20 2-22 141-160 (488)
146 TIGR01733 AA-adenyl-dom amino 44.7 13 0.00028 38.1 1.9 21 2-23 126-146 (408)
147 PF01797 Y1_Tnp: Transposase I 43.6 2E+02 0.0043 24.2 11.4 43 335-388 18-60 (121)
148 PRK09029 O-succinylbenzoic aci 42.7 14 0.0003 39.0 1.7 20 2-22 141-160 (458)
149 PRK07514 malonyl-CoA synthase; 40.7 16 0.00034 38.9 1.8 21 2-23 162-182 (504)
150 PRK05851 long-chain-fatty-acid 40.1 22 0.00048 38.4 2.9 20 2-22 158-177 (525)
151 PRK06164 acyl-CoA synthetase; 40.1 20 0.00043 38.7 2.5 20 3-23 188-207 (540)
152 PRK05857 acyl-CoA synthetase; 40.1 11 0.00025 40.8 0.6 20 2-22 175-194 (540)
153 PRK07656 long-chain-fatty-acid 39.8 21 0.00045 38.0 2.6 20 2-22 172-191 (513)
154 PRK05852 acyl-CoA synthetase; 39.2 23 0.0005 38.2 2.8 21 2-23 182-202 (534)
155 TIGR03098 ligase_PEP_1 acyl-Co 38.9 17 0.00037 38.7 1.8 21 2-23 167-187 (515)
156 PRK07787 acyl-CoA synthetase; 38.7 18 0.00038 38.4 1.8 21 2-23 134-154 (471)
157 PRK13295 cyclohexanecarboxylat 38.2 18 0.0004 39.1 1.9 20 2-22 203-222 (547)
158 PRK08308 acyl-CoA synthetase; 38.1 23 0.00049 36.9 2.5 20 2-22 107-126 (414)
159 PRK04813 D-alanine--poly(phosp 37.7 17 0.00036 38.5 1.5 21 2-23 149-169 (503)
160 PRK03640 O-succinylbenzoic aci 37.3 15 0.00032 38.8 1.0 20 2-22 147-166 (483)
161 PRK06145 acyl-CoA synthetase; 37.1 15 0.00033 39.0 1.0 20 2-22 155-174 (497)
162 PLN02246 4-coumarate--CoA liga 37.0 17 0.00038 39.2 1.4 21 2-23 185-205 (537)
163 PRK08314 long-chain-fatty-acid 36.7 25 0.00054 37.9 2.6 21 2-23 196-216 (546)
164 TIGR02275 DHB_AMP_lig 2,3-dihy 36.5 21 0.00045 38.5 1.9 21 2-23 189-209 (527)
165 PRK06710 long-chain-fatty-acid 36.4 14 0.00031 40.1 0.7 20 2-22 212-231 (563)
166 PRK05605 long-chain-fatty-acid 36.2 16 0.00035 39.8 1.0 20 2-22 225-244 (573)
167 COG0318 CaiC Acyl-CoA syntheta 36.0 25 0.00054 38.4 2.5 21 2-23 177-197 (534)
168 PRK05677 long-chain-fatty-acid 36.0 14 0.00031 40.2 0.6 20 2-22 213-232 (562)
169 PRK07867 acyl-CoA synthetase; 36.0 26 0.00055 38.0 2.6 21 2-23 158-178 (529)
170 PLN02330 4-coumarate--CoA liga 35.9 15 0.00032 39.9 0.6 21 2-23 190-210 (546)
171 PF12627 PolyA_pol_RNAbd: Prob 35.7 59 0.0013 24.4 3.9 41 158-204 21-61 (64)
172 PRK06155 crotonobetaine/carnit 35.1 16 0.00035 39.7 0.8 20 2-22 186-205 (542)
173 PRK07769 long-chain-fatty-acid 34.5 27 0.00059 38.7 2.5 20 2-22 186-205 (631)
174 cd04931 ACT_PAH ACT domain of 34.4 2.6E+02 0.0057 23.0 7.9 58 342-411 25-82 (90)
175 PRK07798 acyl-CoA synthetase; 34.2 17 0.00037 38.8 0.8 20 2-22 169-188 (533)
176 PRK06839 acyl-CoA synthetase; 34.2 15 0.00034 38.8 0.5 20 2-22 155-174 (496)
177 TIGR02262 benz_CoA_lig benzoat 34.0 23 0.0005 37.8 1.8 21 2-23 167-187 (508)
178 PRK07786 long-chain-fatty-acid 33.9 26 0.00056 38.0 2.2 20 2-22 180-199 (542)
179 PRK07059 Long-chain-fatty-acid 33.9 19 0.0004 39.1 1.1 20 2-22 210-229 (557)
180 PRK08315 AMP-binding domain pr 33.8 29 0.00062 37.6 2.5 20 2-22 205-224 (559)
181 PRK13388 acyl-CoA synthetase; 33.7 30 0.00065 37.5 2.7 20 2-22 156-175 (540)
182 PRK12476 putative fatty-acid-- 33.6 31 0.00067 38.2 2.7 20 2-22 199-218 (612)
183 PRK12582 acyl-CoA synthetase; 33.3 27 0.00058 38.8 2.2 20 2-22 226-245 (624)
184 PLN03102 acyl-activating enzym 33.1 19 0.00041 39.6 1.0 19 2-21 192-210 (579)
185 PRK13298 tRNA CCA-pyrophosphor 32.8 1.4E+02 0.0031 31.9 7.4 77 121-204 121-211 (417)
186 PRK08316 acyl-CoA synthetase; 31.8 31 0.00067 36.7 2.4 20 2-22 177-196 (523)
187 PRK08008 caiC putative crotono 31.8 21 0.00045 38.2 1.0 20 2-22 179-198 (517)
188 COG2026 RelE Cytotoxic transla 31.4 85 0.0018 25.8 4.4 30 295-324 43-72 (90)
189 PRK05620 long-chain-fatty-acid 31.4 19 0.00041 39.4 0.6 20 2-22 187-206 (576)
190 PRK06060 acyl-CoA synthetase; 31.2 27 0.00058 39.4 1.8 21 2-23 151-171 (705)
191 PLN03051 acyl-activating enzym 31.1 22 0.00048 38.1 1.1 20 2-22 125-144 (499)
192 PTZ00237 acetyl-CoA synthetase 30.9 21 0.00045 40.0 0.8 19 2-21 260-278 (647)
193 PLN02574 4-coumarate--CoA liga 30.3 23 0.0005 38.6 1.0 20 2-22 204-223 (560)
194 PRK08043 bifunctional acyl-[ac 30.3 38 0.00082 38.4 2.8 20 2-22 371-390 (718)
195 PF12690 BsuPI: Intracellular 30.1 35 0.00077 27.7 1.8 22 290-311 21-44 (82)
196 PRK13382 acyl-CoA synthetase; 30.1 35 0.00077 36.9 2.4 20 2-22 202-221 (537)
197 PLN02479 acetate-CoA ligase 29.8 22 0.00047 38.9 0.7 19 2-21 201-219 (567)
198 PRK06178 acyl-CoA synthetase; 29.7 22 0.00048 38.7 0.8 20 2-22 215-234 (567)
199 PRK13383 acyl-CoA synthetase; 29.4 24 0.00053 37.8 1.0 19 2-21 180-198 (516)
200 PLN02861 long-chain-fatty-acid 29.2 25 0.00054 39.5 1.1 20 2-22 226-245 (660)
201 PRK12583 acyl-CoA synthetase; 29.1 39 0.00085 36.4 2.6 20 2-22 207-226 (558)
202 TIGR03205 pimA dicarboxylate-- 29.0 30 0.00065 37.4 1.6 21 2-23 198-218 (541)
203 PRK06087 short chain acyl-CoA 28.9 40 0.00087 36.4 2.6 19 3-22 194-212 (547)
204 PTZ00216 acyl-CoA synthetase; 28.5 33 0.00072 38.8 2.0 21 2-23 270-290 (700)
205 PRK10885 cca multifunctional t 28.0 1.2E+02 0.0025 32.4 5.8 77 121-204 121-211 (409)
206 PLN02614 long-chain acyl-CoA s 27.9 27 0.00058 39.4 1.0 20 2-22 229-248 (666)
207 PRK12492 long-chain-fatty-acid 27.6 44 0.00095 36.4 2.7 20 2-22 213-232 (562)
208 PRK03584 acetoacetyl-CoA synth 27.3 27 0.00058 39.0 0.9 19 2-21 269-287 (655)
209 PRK09192 acyl-CoA synthetase; 27.3 35 0.00077 37.3 1.9 20 2-22 182-201 (579)
210 PLN03052 acetate--CoA ligase; 27.3 29 0.00063 39.6 1.2 20 2-22 362-381 (728)
211 PRK11899 prephenate dehydratas 27.2 4.2E+02 0.009 26.7 9.3 42 342-389 205-246 (279)
212 PRK06188 acyl-CoA synthetase; 27.2 36 0.00079 36.4 1.9 21 2-23 174-194 (524)
213 PRK08974 long-chain-fatty-acid 27.2 30 0.00064 37.6 1.2 20 3-23 213-232 (560)
214 PF12401 DUF3662: Protein of u 27.0 47 0.001 28.8 2.2 84 336-436 20-106 (116)
215 PRK05850 acyl-CoA synthetase; 26.7 25 0.00055 38.3 0.6 20 2-22 166-185 (578)
216 PLN02430 long-chain-fatty-acid 26.5 41 0.00089 37.8 2.2 20 2-22 226-245 (660)
217 TIGR01217 ac_ac_CoA_syn acetoa 25.9 31 0.00067 38.7 1.1 19 2-21 270-288 (652)
218 PRK07008 long-chain-fatty-acid 25.8 31 0.00068 37.3 1.1 38 200-241 292-331 (539)
219 TIGR02778 ligD_pol DNA polymer 25.8 54 0.0012 32.4 2.6 42 1-46 151-193 (245)
220 TIGR03208 cyc_hxne_CoA_lg cycl 25.5 46 0.001 35.9 2.3 20 2-22 201-220 (538)
221 PRK07768 long-chain-fatty-acid 25.1 47 0.001 35.8 2.3 20 2-22 158-177 (545)
222 cd04865 LigD_Pol_like_2 LigD_P 24.9 58 0.0013 31.8 2.6 43 1-46 136-178 (228)
223 PRK06018 putative acyl-CoA syn 24.7 30 0.00066 37.4 0.7 37 200-241 293-331 (542)
224 cd04861 LigD_Pol_like LigD_Pol 24.6 59 0.0013 31.8 2.6 43 1-46 135-177 (227)
225 PF09926 DUF2158: Uncharacteri 24.2 64 0.0014 24.1 2.1 19 308-329 1-19 (53)
226 PRK08162 acyl-CoA synthetase; 24.2 34 0.00075 36.8 1.0 19 2-21 188-206 (545)
227 PRK08633 2-acyl-glycerophospho 23.9 46 0.001 39.5 2.1 20 2-22 788-807 (1146)
228 cd04863 MtLigD_Pol_like MtLigD 23.2 65 0.0014 31.6 2.6 43 1-46 139-181 (231)
229 COG0077 PheA Prephenate dehydr 22.9 4.8E+02 0.01 26.3 8.7 68 316-389 167-246 (279)
230 PTZ00342 acyl-CoA synthetase; 22.3 41 0.00088 38.7 1.2 20 2-22 310-329 (746)
231 cd04862 PaeLigD_Pol_like PaeLi 21.9 72 0.0016 31.2 2.6 43 1-46 135-177 (227)
232 cd04866 LigD_Pol_like_3 LigD_P 21.6 73 0.0016 31.0 2.5 42 1-46 130-173 (223)
233 cd01683 EF2_IV_snRNP EF-2_doma 20.9 1E+02 0.0023 28.7 3.4 15 144-158 38-52 (178)
234 cd04864 LigD_Pol_like_1 LigD_P 20.5 80 0.0017 30.9 2.6 43 1-46 136-178 (228)
235 cd05830 Sortase_D_5 Sortase D 20.2 96 0.0021 27.5 2.9 29 286-316 63-91 (137)
No 1
>PLN02620 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=3.4e-113 Score=916.07 Aligned_cols=474 Identities=31% Similarity=0.607 Sum_probs=436.2
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS 80 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 80 (484)
|++|||||+|++|+||+|++++++++. ++.+++.++.++ .|++..||.||+++.+.+.+|++|||+|++|+.+|+ |
T Consensus 106 F~~SSGTT~g~~K~IP~t~e~l~~~~~--~~~~~~~~~~~~-~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~-s 181 (612)
T PLN02620 106 FLTSSGTSGGERKLMPTIEEELGRRSL--LYSLLMPVMSQF-VPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK-S 181 (612)
T ss_pred hhhcCCCCCCceeeeecCHHHHHHHHH--HHHHHHHHHHhh-CCCcccCcEEEEEecccCccCCCCcccccccchhhh-h
Confidence 789999998899999999999998776 677777777775 699999999999999999999999999999999999 5
Q ss_pred Cc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497 81 SN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL 157 (484)
Q Consensus 81 ~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~ 157 (484)
.+ +. + .+...|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.+++.||++|++||+||++|++++
T Consensus 182 ~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls~ 261 (612)
T PLN02620 182 SHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTIDS 261 (612)
T ss_pred hhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 44 32 2 445689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a 237 (484)
+++|+++|++|++.| +|||++|++|+++|++.+|+||+++|||||++|+||++|+|++|+++|++|+|++|+++.+|+|
T Consensus 262 ~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~A 340 (612)
T PLN02620 262 QITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYAS 340 (612)
T ss_pred cCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccc
Confidence 999999999999999 7999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc------------ccCCCceeecccccCCceEEEEeccCCce
Q 011497 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGKMYEVVVTTYRGF 305 (484)
Q Consensus 238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~------------~~~~~~~l~l~ele~G~~YeLVvTt~~GL 305 (484)
|||+||||++|.+++++..|+++|+++||||||+++.+. +.+++++|+++|||+|++|||||||.+||
T Consensus 341 SE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~GL 420 (612)
T PLN02620 341 SECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGL 420 (612)
T ss_pred cceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEEEEEEecCce
Confidence 999999999999999889999999999999999875210 13346789999999999999999999999
Q ss_pred eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEE
Q 011497 306 YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMI 382 (484)
Q Consensus 306 yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l 382 (484)
||||+||||+|+||||++|+|+|++|.+. |+|||++|++++.||.+|...|.. .+++|+||++++|.+..||||++
T Consensus 421 yRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~~d~~~~PghYvl 499 (612)
T PLN02620 421 YRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSYADTSTIPGHYVL 499 (612)
T ss_pred EEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEeccccCCCCCceEE
Confidence 99999999999999999999999999998 999999999999999999986644 58999999999998778999999
Q ss_pred EEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccC
Q 011497 383 FVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVR 461 (484)
Q Consensus 383 ~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~ 461 (484)
|||+...+. .+.+.+.+++||..||++||.+|+.+|..+ .|+|++|++|++|||++++++++++|++.+|||+|||++
T Consensus 500 ~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~Pr~v~ 578 (612)
T PLN02620 500 FWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVK 578 (612)
T ss_pred EEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccCceEec
Confidence 999842111 124567899999999999999999999987 599999999999999999999999999999999999999
Q ss_pred CHHHHHHHhccceEEEeccC
Q 011497 462 NREIVEFMEGCSLVTVRLDS 481 (484)
Q Consensus 462 ~~~~~~~l~~~~~~~~~~~~ 481 (484)
+++++++|+++|++.+--..
T Consensus 579 ~~~~~~~l~~~v~~~~~s~~ 598 (612)
T PLN02620 579 FAPIIELLNSRVVSNYFSPK 598 (612)
T ss_pred CHHHHHHHHhhhheeecccc
Confidence 99999999999999876543
No 2
>PLN02247 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=2.8e-112 Score=910.97 Aligned_cols=476 Identities=32% Similarity=0.627 Sum_probs=435.4
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS 80 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 80 (484)
|++|||||+|++|+||+|+++++++.. ++.++..+++++ .|++..||.||+++.+.+.+|++|||+|++++.+++ +
T Consensus 94 F~~SSGTT~g~~K~IP~t~e~l~~~~~--~~~l~~~~~~~~-~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~~t~y~~-s 169 (606)
T PLN02247 94 LLTSSGTSGGQPKLMPSTAEELDRKTF--FYNLLVPVMNKY-VDGLDQGKGMYLLFIKPEISTPSGLMARPVLTSYYK-S 169 (606)
T ss_pred eeccCCCCCCceeEeeccHHHHHHHHH--HHHHHHHHHHhc-CCCcccCcEEEEEecCcCccCCCCcccccccchhhc-c
Confidence 789999998899999999999988665 678888777775 599999999999999999999999999999999888 5
Q ss_pred Cc-ccccc--cccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497 81 SN-ENLSQ--LIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL 157 (484)
Q Consensus 81 ~~-~~~~~--~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~ 157 (484)
.+ +++.+ ...|++|.+++.++|..++|||||||+|.+++++..++++|+++++.+++.||++|++||+||++|++++
T Consensus 170 ~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~vl~v~svfa~s~l~a~~~Le~~we~L~~DI~~G~ls~ 249 (606)
T PLN02247 170 SNFRNRPFNRYNVYTSPDETILCQDSKQSMYCQLLCGLVQRDEVLRVGAVFASAFLRAIKFLEDHWKELCSNIRTGCVSD 249 (606)
T ss_pred ccccccccccccceeCcHHhhcCCCHHHHHHHHHHHHhhccccccEEEEeccHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 43 33322 3589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a 237 (484)
++++|++|+++...+..|||++|++|+++|.+.+|.|++++|||||++|+||++|+|++|+++|++|+|++|+++.+|+|
T Consensus 250 ~it~p~~R~a~~~~l~~p~peLA~~l~~~c~~~~w~gi~~rLWP~lk~I~~~~tGsm~~Y~~~L~~y~gglpl~s~~Y~s 329 (606)
T PLN02247 250 WITDPSCRNAVSSILSKPNSELADLIESECSGKSWEGIIKRLWPRTKYIEVIVTGSMAQYIPTLEFYSGGLPLVSTMYAS 329 (606)
T ss_pred ccCCHHHHHHHhhcccCCCHHHHHHHHHHhcccCccccHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCceecccccc
Confidence 99999999999999977999999999999998899999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcc-----------------cCCCceeecccccCCceEEEEec
Q 011497 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNE-----------------AVGEETVDFSGVEIGKMYEVVVT 300 (484)
Q Consensus 238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~-----------------~~~~~~l~l~ele~G~~YeLVvT 300 (484)
|||++|||++|.+++++..|+++|+++||||||+++.+.+ .+++++|+++|||+|++||||||
T Consensus 330 SE~~~ginl~p~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~evk~G~~YelVvT 409 (606)
T PLN02247 330 SECYFGINLKPLSDPSDVSYTLLPNMAYFEFLPVDKNNGEVIHFVQCNGTDDDDDALKEDLEIVDLVDVKVGHYYELVVT 409 (606)
T ss_pred cceEEEeccCcCCCccCCceeecCCcEEEEEeecCCCcccccccccccccccccccccccCceecHHHccCCCeEEEEEE
Confidence 9999999999999888899999999999999998753100 12456999999999999999999
Q ss_pred cCCceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCC
Q 011497 301 TYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSP 377 (484)
Q Consensus 301 t~~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~ 377 (484)
|.+||||||+||||+|+||||++|+|+|+||.+. |+|||++|++++.||.+|...+.. .+..|++|++++|.++.|
T Consensus 410 t~~GLYRYrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~d~ts~~d~~~~P 488 (606)
T PLN02247 410 TFTGLYRYRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQAKLLLEP-LGFLLTEYTSYADTSSIP 488 (606)
T ss_pred ecCceEEEecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHHHHhhcc-cCeeeeeeecccccCCCC
Confidence 9999999999999999999999999999999998 999999999999999999876644 688999999999977789
Q ss_pred ceEEEEEEeecCccc--cCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCcEEEEeCCChHHHHHHHHHHcCCCCCCC
Q 011497 378 KKLMIFVEIREGCTK--LRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPASQY 454 (484)
Q Consensus 378 ~~Y~l~vE~~~~~~~--~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~ 454 (484)
|||++|||+...... ...+...+++||..||++||.+|+.+|..+ +|+|++|++|++|||++++++++++|++.+||
T Consensus 489 ghYvlf~El~~~~~~~~~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~~igPLeirvv~~GtF~~l~~~~~~~G~s~~Q~ 568 (606)
T PLN02247 489 GHYVLFWELKTRGSNDPPELDPKIMEQCCSTVEESLDSVYRRCRKRDKSIGPLEIRVVKHGTFDALMDFCVSQGSSVNQY 568 (606)
T ss_pred CceEEEEEeecCCCCccccchHHHHHHHHHHHHHHhhHHHHHHhhccCcCCCcEEEEeCCChHHHHHHHHHHcCCCcccc
Confidence 999999999521110 123457889999999999999999999995 99999999999999999999999999999999
Q ss_pred CCCcccCCHHHHHHHhccceEEEeccC
Q 011497 455 KPPKIVRNREIVEFMEGCSLVTVRLDS 481 (484)
Q Consensus 455 K~Pr~~~~~~~~~~l~~~~~~~~~~~~ 481 (484)
|+|||+++.+++++|+++|++++--..
T Consensus 569 K~Pr~v~~~~~~~~l~~~v~~~~~s~~ 595 (606)
T PLN02247 569 KTPRCIKSEEALKILDSRVIGRFFSKR 595 (606)
T ss_pred cCceEecCHHHHHHHHhhhheeecccc
Confidence 999999999999999999999876443
No 3
>PLN02249 indole-3-acetic acid-amido synthetase
Probab=100.00 E-value=8.9e-104 Score=852.11 Aligned_cols=477 Identities=30% Similarity=0.583 Sum_probs=428.5
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS 80 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 80 (484)
|++|||||+|++|+||+|+++++...+.....++ ..+++ .|+++.||.|++++.+.+.+|++|+|+|+.++.+++ +
T Consensus 105 f~~SSGTT~g~~K~IP~T~~~l~~~~~~~~~~~~--~~~~~-~~~l~~Gk~l~~~~~~~~~~t~gG~p~~~~~~~~~~-~ 180 (597)
T PLN02249 105 FLTSSGTSAGERKLMPTIEEDIDRRQLLGSLLMP--VMNLY-VPGLDKGKGLYFLFVKSESKTSGGLPARPALTSYYK-S 180 (597)
T ss_pred hcccCCCCCCceeEEeccHHHHHHHHHHHHHHHH--HHhcc-CCccccCcEEEEEeccccccCCCCCccCcccccccc-c
Confidence 7899999999999999999999843432233333 33433 588999999999999999999999999999988666 4
Q ss_pred Cc-ccccccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 011497 81 SN-ENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDI 159 (484)
Q Consensus 81 ~~-~~~~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~~i 159 (484)
.. +++.+...|++|.+++.+.|..+++||||||||.+++++..|++.||+.++.++++|+++|++||+||++|++++++
T Consensus 181 ~~f~~~~~~~~~~~P~ev~~~~D~~~~~Y~~lL~gL~~~~~~~~i~~~~Ps~l~~~~~~l~~~weel~~dI~~g~~~~~~ 260 (597)
T PLN02249 181 DHFRTSDYDNVYTSPNEAILCSDSSQSMYAQMLCGLLMRHEVLRLGAVFPSGLLRAISFLQNNWKELAQDISTGTLSSKI 260 (597)
T ss_pred cccccccccccccCcHHhhcCCCHHHHHHHHHHHHHhhccccceEEEECcHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 32 34455788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCc
Q 011497 160 TEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASE 239 (484)
Q Consensus 160 ~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSE 239 (484)
++|.+|..|...+|.|+|++|++++++|++..|+|++++|||||++|+||+||+|++|++++++|+|++++++++|+|||
T Consensus 261 ~~~~~~~~v~~i~g~P~~~la~~i~~~~~~~~~~gii~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~~~~~~~Y~ASE 340 (597)
T PLN02249 261 FDPAIKNRMSKILNKPDQELAEFLIGVCSQENWEGIITKIWPNTKYLDVIVTGAMAQYIPMLEYYSGGLPMASTIYASSE 340 (597)
T ss_pred cchHHHHHHHhhcCCCCHHHHHHHHHHhccccccccHHHhCCCCCeEEEEecCChHHHHHHHHHHcCCCccccccccccc
Confidence 99999999999999999999999999999878999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc-ccCCCceeecccccCCceEEEEeccCCceeeeeeCCEEEEee
Q 011497 240 CYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN-EAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVD 318 (484)
Q Consensus 240 g~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~-~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~v~g 318 (484)
|+||+|+++.+++++..|+|+|+++||||||.++... ..+++++|+++|||+|++|||||||.+|||||++||||+|||
T Consensus 341 g~~gi~~~~~~~p~~~~~~l~~~~~ffEFiP~~~~~~~~~~~~~~v~l~eVe~G~~Y~lVvTT~~GLyRY~iGDvVrvtg 420 (597)
T PLN02249 341 SYFGINLNPMCKPSEVSYTIMPNMAYFEFLPHNHDGDGALDETSLVELADVEVGKEYELVITTYAGLYRYRVGDILRVTG 420 (597)
T ss_pred eEEEeecCCCCCCCCcceEecCCcEEEEeeecccCCcccCCCCcEecHHHcCCCCeEEEEEEcccceeEeecCCEEEEee
Confidence 9999999998888888999999999999999875310 114678999999999999999999999999999999999999
Q ss_pred eeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCcccc-C
Q 011497 319 FYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKL-R 394 (484)
Q Consensus 319 ~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~-~ 394 (484)
|+|++|+|+|+||+++ +.|||++|++++.||.+|...+++ .|+.|.||++.++..+.|+||++|||++...+.. .
T Consensus 421 f~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~a~~~~~~-~~~~v~eft~~~~~~~~p~Hyvl~wei~~~~~~~~~ 499 (597)
T PLN02249 421 FHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVENASRLLAE-QGTRVIEYTSYAETKTIPGHYVIYWELLGRDQSNAL 499 (597)
T ss_pred ccCCCcEEEEEccCCcceecccccCCHHHHHHHHHHHHHHhhh-cCceEEEeEEecCCCCCCCceEEEEEEeccccccCC
Confidence 9999999999999998 999999999999999997765545 7999999999887766699999999994210000 1
Q ss_pred CCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhccc
Q 011497 395 DSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCS 473 (484)
Q Consensus 395 ~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~ 473 (484)
.+.+.+++||..++++||.+|+.+|..+ +|+|++|++|++|+|.+|+++++++|++.||||+|||+++++++++|+++|
T Consensus 500 ~~~~~~~~~~~~~e~~ln~~Y~~~R~~~~~L~pl~v~vv~~GtF~~~~~~~~~~G~~~gQ~K~Prl~~~~~~~~~l~~~~ 579 (597)
T PLN02249 500 PSDEVMAKCCLEMEESLNSVYRQSRVSDKSIGPLEIRVVQNGTFEELMDYAISRGSSINQYKVPRCVSLTPIMELLDSRV 579 (597)
T ss_pred CCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCeEEEEeCCchHHHHHHHHHhCCCcCCCcCCceEeCCHHHHHHHHhhh
Confidence 3567888999999999999999999886 999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCC
Q 011497 474 LVTVRLDSL 482 (484)
Q Consensus 474 ~~~~~~~~~ 482 (484)
++.+.....
T Consensus 580 ~~~~~~~~~ 588 (597)
T PLN02249 580 VSAHFSPSL 588 (597)
T ss_pred heeeccccC
Confidence 998875543
No 4
>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin. The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.
Probab=100.00 E-value=5.1e-98 Score=805.10 Aligned_cols=430 Identities=32% Similarity=0.557 Sum_probs=337.4
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC-CCCeeEE--EEecccccccCCCcEEeeCccccc
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH-DVNKILF--FIYSDNKTTTKAGFKVMAASAFPL 77 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~-~~gk~l~--~~~~~~~~~t~~Gip~g~~s~~~~ 77 (484)
|++||||||+++|+||+|+++++.+++..+..+|..++.++ .|.. ..||.++ +.+.+...+|++|+|+|++|++.+
T Consensus 85 f~~TSGTTg~~~K~IP~T~~~l~~~~~~~~~~~~~~~l~~~-~p~~~~~gk~~~l~~~~~~~~~~t~~Gi~~g~~s~~~~ 163 (528)
T PF03321_consen 85 FALTSGTTGGKSKLIPYTKEFLKEFRRLGAIAAWLYYLYRN-FPGLLFQGKSLYLSFSFAPPPLRTPGGIPIGSISGIPY 163 (528)
T ss_dssp EEEEEEEETTEEEEEEESHHHHHHHHHHHHHHHHH--HHHH-SSS--TTSE--EEEE------EE-TTS-EEE-HHHHHH
T ss_pred EEeCCCCCCCCCceeeccHHHHHHHHHHHHHHHHHHHHHhc-CcccccCCcceEEEeecCCCcccCCCCeEEecccccch
Confidence 78999999555999999999999988544566666545544 4777 5799444 334578889999999999999988
Q ss_pred cCCCcccccccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497 78 QGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL 157 (484)
Q Consensus 78 ~~~~~~~~~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~ 157 (484)
+ ... ..+..+|++|.+++.+.|..+++||||+|+|.+++||++|+++||++|+.++++|+++|++||+||++|+++
T Consensus 164 ~-~~~--~~~~~~~~~P~~~~~~~~~~~~~y~~ll~~l~~~~~l~~i~~~~p~~l~~~~~~le~~~~~l~~dI~~G~~~- 239 (528)
T PF03321_consen 164 R-MIP--PWFRSWFTSPSEVIAAIDDWEAKYCHLLCALLQDRDLRMISGWFPSFLLLLFRLLEKHWEELVEDIRDGTLS- 239 (528)
T ss_dssp T---S--CCHHG-BSS-HHHHT-S-HHHHHHHHHHHHHHCGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS---
T ss_pred h-hCh--HHHccCccCCHHHHhcccHHHHHHHHHHHHhhcccCcCEEEeeCHHHHHHHHHHHHHhhhHhhHHhcCCccc-
Confidence 8 321 133468999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a 237 (484)
+.+|||+||++|+++|++ + .|++++|||||++|+||++|+|++|+++|++|+|++++++.+|+|
T Consensus 240 --------------~~~p~p~rA~~L~~~~~~-~-~~~~~~lWP~L~~v~~~~~g~~~~y~~~l~~~~g~~~~~~~~y~A 303 (528)
T PF03321_consen 240 --------------LLRPNPERAAELRAEFEK-G-RGIPKRLWPNLKLVSCWGGGSMAPYAPKLREYFGGVPIQSKGYGA 303 (528)
T ss_dssp --------------C-S--HHHHHHHHHHHCC-S-TTHHHHHSTT--EEEEE-SGGGGGGHHHHHHHHTTS-EEE-EEEE
T ss_pred --------------cCCCCHHHHHHHHHhhcc-c-CCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCceeeccccc
Confidence 227999999999999998 5 889999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc-ccCCCceeecccccCCceEEEEeccCCceeeeeeCCEEEE
Q 011497 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN-EAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKV 316 (484)
Q Consensus 238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~-~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~v 316 (484)
|||+||+|++++. ..|+++|+.+||||||+++.+. ..+++++++++|||+|++|||||||.+||||||+||||+|
T Consensus 304 SEg~i~i~~~~~~----~~~~l~~~~~ffEFip~~~~~~~~~~~~~~l~~~ele~G~~YelviTt~~GLyRY~iGDvVrv 379 (528)
T PF03321_consen 304 SEGFIGIPLDPED----PGYVLAPDSGFFEFIPVDEDEQNPSEQPKTLLLHELEVGEEYELVITTNSGLYRYRIGDVVRV 379 (528)
T ss_dssp TTEEEEEES-CCC------EEE-TTSSEEEEEE-STT-------SSSEEGGG--TT-EEEEEEESTTS-SSEEECEEEEE
T ss_pred cceEEEEecCCCC----CceEeecCCeEEEEEeccCCcccccCCCceecHHHhcCCCeEEEEEecccceeeeecCCEEEE
Confidence 9999999998443 5788999999999999986410 1467899999999999999999999999999999999999
Q ss_pred eeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEeecCccc
Q 011497 317 VDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTK 392 (484)
Q Consensus 317 ~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~vE~~~~~~~ 392 (484)
+||+|++|+|+|+||.++ |+|||++|++|++||.++++ + +|+++.+|++.++ .++.+|||++|||+...
T Consensus 380 ~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~---~-~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~~~--- 452 (528)
T PF03321_consen 380 TGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQ---E-TGLELRDFTVAPDPSSGNPPHYVLFWELEGE--- 452 (528)
T ss_dssp EEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHH---C-TT-EEEEEEEEEE--SSSSBEEEEEEEECS----
T ss_pred eeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHH---h-cCCceeeEEEEeecccCCCCceEEEEEeCCC---
Confidence 999999999999999997 99999999999999999976 5 8999999999998 56789999999999642
Q ss_pred cCCCHHHHHHHHHHHHHHh---ChhHHHhhhc-CCCCCcEEEEeCCChHHHHHHHHHHc-CCCCCCCCCCcccCCHHHH
Q 011497 393 LRDSVAILRRCCSSLEDAF---GSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEK-GAPASQYKPPKIVRNREIV 466 (484)
Q Consensus 393 ~~~~~~~l~~~~~~ld~~L---n~~Y~~~R~~-g~l~p~~v~~v~~gtf~~~~~~~~~~-G~~~~Q~K~Pr~~~~~~~~ 466 (484)
++.++.|++.||++| |++|+.+|+. |+|+|++|++|++|+|.+|+++++++ |++.+|||+|||++++++.
T Consensus 453 ----~~~~~~~~~~lD~~L~~~n~~Y~~~R~~~g~L~p~~v~~v~~g~f~~~~~~~~~~~G~~~~Q~K~pr~~~~~~~~ 527 (528)
T PF03321_consen 453 ----PDDLEELAKALDESLQELNPHYRRARESDGQLGPPRVHIVRPGTFDALMERAVARLGGSAGQYKVPRLIRDREFV 527 (528)
T ss_dssp ----HHHHHHHHHHHHHCS----HHHHHHHHTSTSC---EEEEE-TTHHHHHHHHHHCT-T--SSS----SS--TCHHH
T ss_pred ----chHHHHHHHHHHHHhhhCCchHHHHHhhcCCcCCcEEEEeCcchHHHHHHHHhhcCCCCccceeCccccCccccC
Confidence 467889999999999 9999999999 99999999999999999999999999 9999999999999999874
No 5
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Probab=99.72 E-value=8.7e-16 Score=159.81 Aligned_cols=201 Identities=17% Similarity=0.177 Sum_probs=140.2
Q ss_pred hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCc
Q 011497 214 MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGK 293 (484)
Q Consensus 214 ~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~ 293 (484)
...-++.+++.|| ++.+ +.||+||+++.- ...|+...+.++. -+.-|+|.+++++ ++. |..|+
T Consensus 223 see~R~~ie~~~g-~~~~-diYGltE~~g~g--~~eC~~~~glhi~-eD~~~~Ei~dP~t-------~e~-----l~dge 285 (438)
T COG1541 223 SEEMRKVIENRFG-CKAF-DIYGLTEGFGPG--AGECTERNGLHIW-EDHFIFEIVDPET-------GEQ-----LPDGE 285 (438)
T ss_pred CHHHHHHHHHHhC-Ccee-eccccccccCCc--ccccccccCCCcc-hhhceeeeecCCc-------Ccc-----CCCCC
Confidence 5777788888898 7778 999999995521 2244444456644 4555899999886 344 44999
Q ss_pred eEEEEeccC--Cc--eeeeeeCCEEEEeeeeCCC----cEE-EEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccC
Q 011497 294 MYEVVVTTY--RG--FYRYRLGDIVKVVDFYNSS----PQV-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMA 361 (484)
Q Consensus 294 ~YeLVvTt~--~G--LyRYr~GDvV~v~g~~~~~----P~i-~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g 361 (484)
.+|||+||+ .| |.||||||++.+....|.| |+| ++.||.|+ +.|.++++.++++++.+...
T Consensus 286 ~GelV~T~L~~~~~PlIRYrtgDit~i~~~~C~cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~------- 358 (438)
T COG1541 286 RGELVITTLTKEGMPLIRYRTGDITVILSDPCGCGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPE------- 358 (438)
T ss_pred eeEEEEEeccccCcceEEEEcCCeeEecccCCCCCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccC-------
Confidence 999999998 33 9999999999999976633 444 89999999 99999999999999987643
Q ss_pred ceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCCChHHHHH
Q 011497 362 VEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLL 441 (484)
Q Consensus 362 ~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~~~~ 441 (484)
+.. +|.+.....+......+-||..++ ........++++.+.+.+ ..-...+++|.+|.+|+.++..
T Consensus 359 ~~~-~yqi~~~~~~~~d~L~V~vE~~~~----~~~~~~~~~~~~~l~~~~--------~~~~~~~~~v~~v~~g~l~r~~ 425 (438)
T COG1541 359 VTP-HYQIILTRNGGLDELTVRVELENE----AEELEDERRLAKKLIKNI--------KSELGVRVEVELVEPGELPRTE 425 (438)
T ss_pred CCc-eEEEEEecCCCCceEEEEEEecCc----ccchHHHHHHHHHHHHHH--------HhhcCCceEEEEEeccceeccc
Confidence 222 888877644445677788888642 011122222333443333 2223588999999999987543
Q ss_pred HHHHHcCCCCCCCCCCcccCCH
Q 011497 442 QVAIEKGAPASQYKPPKIVRNR 463 (484)
Q Consensus 442 ~~~~~~G~~~~Q~K~Pr~~~~~ 463 (484)
. |.+|++..+
T Consensus 426 ~------------K~krvvd~r 435 (438)
T COG1541 426 G------------KAKRVVDKR 435 (438)
T ss_pred C------------ceeEEEEec
Confidence 2 667776543
No 6
>TIGR03335 F390_ftsA coenzyme F390 synthetase. This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
Probab=99.68 E-value=3.3e-15 Score=159.06 Aligned_cols=206 Identities=14% Similarity=0.113 Sum_probs=129.9
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcc
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNE 277 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~ 277 (484)
++++.| ..|+ ....+..+++.|| ++++ +.||+||+.++.. |....+++ +..+..++|.+++++
T Consensus 204 ~~lr~i---i~gGE~l~~~~r~~ie~~~g-~~v~-~~YG~TE~~~~~~----c~~~~g~h-~~~d~~~vEIvDp~~---- 269 (445)
T TIGR03335 204 SSIRRL---VVGGESFADESRNYVEELWG-CEVY-NTYGSTEGTMCGE----CQAVAGLH-VPEDLVHLDVYDPRH---- 269 (445)
T ss_pred CcceEE---EEcCCCCCHHHHHHHHHHhC-CcEE-ecCChhhhhheEE----ecCCCCcc-ccCCceEEEEEcCCC----
Confidence 566643 3333 3444677888887 8999 8999999754432 22222444 555667899998764
Q ss_pred cCCCceeecccccCCceEEEEeccCC------c--eeeeeeCCEEEEe-eeeCC----CcEEEEeeeCCC---cceeecC
Q 011497 278 AVGEETVDFSGVEIGKMYEVVVTTYR------G--FYRYRLGDIVKVV-DFYNS----SPQVEFVMRAPK---SSFEIIS 341 (484)
Q Consensus 278 ~~~~~~l~l~ele~G~~YeLVvTt~~------G--LyRYr~GDvV~v~-g~~~~----~P~i~F~gR~~~---i~gEkl~ 341 (484)
.++ |.+|+.+|||+|++. | |.||||||++++. .-.|. .|++..+||.|+ |+|.+++
T Consensus 270 ---~~~-----vp~Ge~GELvvT~L~~~~~r~~~PliRYrtgD~~~~~~~~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~ 341 (445)
T TIGR03335 270 ---QRF-----LPDGECGRIVLTTLLKPGERCGSLLINYDTEDTTVVISRDRCPCGRTHMRILNPEREAETIWISGVPFN 341 (445)
T ss_pred ---CCC-----CcCCCceEEEEEecCCCCccCCceEEEeecCceEEEecCCCCCCCCCcceeCCCcccCceEEECCEEeC
Confidence 233 358999999999983 2 8999999999974 34443 478877899998 9999999
Q ss_pred HHHHHHHHHHHHHHhccccCceEEEEEEeecCCC-CCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhh
Q 011497 342 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLES-SPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRD 420 (484)
Q Consensus 342 e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~-~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~ 420 (484)
+.+|+++|.+..... ++++ +|.++.+... ....-.+-+|.... .....+++.+.+.+++...++..+.
T Consensus 342 p~~ie~~l~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~v~~e~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (445)
T TIGR03335 342 RVDVERAVFQRENMD-SLTG----EYEAFLYGEEEGEITLRVSLECEDK------DNCSIHDIQENFTGTFLKYKPELIG 410 (445)
T ss_pred HHHHHHHHhccCCCC-CCCc----cEEEEEecCCCCCceEEEEEEecCc------ccchHHHHHHHHHHHHhhhhhhhhh
Confidence 999999998741100 2133 6877764321 12344566676432 1122334445555542111222111
Q ss_pred ---cCCCCCcEEEEeCCChHHHH
Q 011497 421 ---RGEISPLSVSIVKPGTFDRL 440 (484)
Q Consensus 421 ---~g~l~p~~v~~v~~gtf~~~ 440 (484)
.+ .-.++|.+|++|++++.
T Consensus 411 ~~~~~-~~~~~~~~~~~~~~~~~ 432 (445)
T TIGR03335 411 SYDEG-IFQILVNFTGPGELELH 432 (445)
T ss_pred hhhcc-eEEEEEEEeCCCCcccc
Confidence 12 34468999999999754
No 7
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase. Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
Probab=99.49 E-value=9.9e-12 Score=131.08 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=119.6
Q ss_pred hhhhHHHHHHHhCCCCccccccccCcee---EEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeeccccc
Q 011497 214 MSQYCSKIKYYAGEVPVLGGDYFASECY---VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 290 (484)
Q Consensus 214 ~~~y~~~l~~~~g~v~~~~~~y~aSEg~---~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele 290 (484)
....++.+++.+| ++++ +.||+||+. ++. .+.. ...+. .+..+..+.|.+++++ +++ +.
T Consensus 208 ~~~~~~~i~~~~g-~~v~-~~YG~tE~~~~~~~~--~~~~-~~~g~-~~~~~~~~~eivd~~~-------g~~-----v~ 269 (422)
T TIGR02155 208 TNAMRKEIEARLG-MKAT-DIYGLSEVIGPGVAM--ECVE-TQDGL-HIWEDHFYPEIIDPHT-------GEV-----LP 269 (422)
T ss_pred CHHHHHHHHHHhC-CceE-ecccchhhcCCceee--cccc-cCCCc-eEecCeeEEEEECCCC-------CCC-----CC
Confidence 3556677888887 8888 899999962 333 2110 11133 3445566789987553 233 34
Q ss_pred CCceEEEEeccCCc----eeeeeeCCEEEEeeeeC--CCcEE-EEeeeCCC---cceeecCHHHHHHHHHHHHHHhcccc
Q 011497 291 IGKMYEVVVTTYRG----FYRYRLGDIVKVVDFYN--SSPQV-EFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVM 360 (484)
Q Consensus 291 ~G~~YeLVvTt~~G----LyRYr~GDvV~v~g~~~--~~P~i-~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~ 360 (484)
+|+.+|||+|+..- +.||+|||++++.. .| ..|++ .|+||.++ +.|+++++.+|+.++.+..
T Consensus 270 ~Ge~Gelvvt~~~~~~~p~~ry~TGDl~~~~~-~~Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~------- 341 (422)
T TIGR02155 270 DGEEGELVFTTLTKEALPVIRYRTRDLTRLLP-GTARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMD------- 341 (422)
T ss_pred CCCeeEEEEecCCccccceeeEEcCcEEEEEC-CCCCcccccccccCccCCeEEECCEEECHHHHHHHHHhCc-------
Confidence 89999999998632 67999999999865 22 34544 79999998 8889999999999887542
Q ss_pred CceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCCChHHH
Q 011497 361 AVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 439 (484)
Q Consensus 361 g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~~ 439 (484)
++. ..|.+..+..+.+-..++.+|...+.. .....+..+.++++|.+.+ |+.- -..++|.++..|+|++
T Consensus 342 ~v~-~~~q~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~i~~~~-------~~~~-~~~~~v~~~~~~~lp~ 410 (422)
T TIGR02155 342 ELS-PHYQLELTRNGHMDELTLKVELKPESY-TLRLHEQASLLAGEIQHTI-------KQEV-GVSMDVHLVEPGSLPR 410 (422)
T ss_pred CcC-CCEEEEEEcCCCccEEEEEEEEecCcc-cccchHHHHHHHHHHHHHH-------Hhcc-CcEEEEEEECCCCccC
Confidence 221 146655543222335678888753210 0011223334455565555 3321 2235799999999874
No 8
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme. Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
Probab=99.35 E-value=1.8e-10 Score=121.95 Aligned_cols=134 Identities=16% Similarity=0.095 Sum_probs=93.7
Q ss_pred hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEe--eecCCcCcccCCCceeecccccC
Q 011497 214 MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEF--LPFDMEKNEAVGEETVDFSGVEI 291 (484)
Q Consensus 214 ~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEF--ip~~~~~~~~~~~~~l~l~ele~ 291 (484)
....++.|++.|| ++++ ..||+|||+++.. |.. +.|.+..+..|+|+ ++++ +
T Consensus 225 ~~~~r~~Ie~~fg-~~V~-~~YG~tEg~la~e----C~~--g~lHl~ed~~~vE~~ivD~~--------~---------- 278 (430)
T TIGR02304 225 EPQDRELIRNVFK-NTVH-QIYQATEGFLAST----CRC--GTLHLNEDLVHIEKQYLDEH--------K---------- 278 (430)
T ss_pred CHHHHHHHHHHhC-CCee-EccCCchhheEEe----cCC--CCEEEccccEEEEeeEECCC--------C----------
Confidence 4556678899998 8988 8999999877763 322 34667888889994 5432 1
Q ss_pred CceEEEEeccCCc----eeeeeeCCEEEEeeeeCC----CcEE-EEeeeCCC-cc-----e--eecCHHHHHHHHHHHHH
Q 011497 292 GKMYEVVVTTYRG----FYRYRLGDIVKVVDFYNS----SPQV-EFVMRAPK-SS-----F--EIISERDLMSAMESFQM 354 (484)
Q Consensus 292 G~~YeLVvTt~~G----LyRYr~GDvV~v~g~~~~----~P~i-~F~gR~~~-i~-----g--Ekl~e~~v~~av~~~~~ 354 (484)
..+.|||++.- |.||+|||++++.+..|. .|+| ++.||.++ +. | ..+++..+..++....+
T Consensus 279 --~~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~l~~~~~~G~~v~v~p~~~~~~i~~~~~ 356 (430)
T TIGR02304 279 --RFVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDIFQLITRSGDEQTVFPDFIRRVILFTLP 356 (430)
T ss_pred --ceEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCEEEEecCCCCeEEeCHHHHHHHHHhcCC
Confidence 13359999953 999999999998777653 3677 59999999 43 3 44588888777654322
Q ss_pred HhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 011497 355 MLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 386 (484)
Q Consensus 355 ~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~ 386 (484)
+ +.+|.++.. ...+.++.++.
T Consensus 357 ------~--i~~yQi~Q~---~~~~l~v~~~~ 377 (430)
T TIGR02304 357 ------L--IVEYRVLQT---GSAQLELIADC 377 (430)
T ss_pred ------C--CceEEEEEc---cCCeEEEEEEe
Confidence 2 468887764 25666666653
No 9
>PRK00174 acetyl-CoA synthetase; Provisional
Probab=98.96 E-value=4e-07 Score=101.09 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=121.8
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCC--CCccccccccCceeEEeec-CCC---CCCCCcceeccCCceEEEeee
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGE--VPVLGGDYFASECYVGINL-DIA---QPPQTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~--v~~~~~~y~aSEg~~~i~~-~~~---~~~~~~~~~l~~~~~ffEFip 270 (484)
.+.|++| .+|| + ......+++.++. ++++ ..||+||+...+-. .+. ..++ ......|+. -++.++
T Consensus 366 ~~~lr~i---~~~Ge~l~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~-~vG~p~~g~-~~~i~d 439 (637)
T PRK00174 366 LSSLRLL---GSVGEPINPEAWEWYYKVVGGERCPIV-DTWWQTETGGIMITPLPGATPLKPG-SATRPLPGI-QPAVVD 439 (637)
T ss_pred ccceeEE---EEeCCCCCHHHHHHHHHHhCCCCCceE-ecccccccCCceEecCCCCCCcCCC-cccCCCCCc-eEEEEC
Confidence 3666644 3333 2 3334556666653 8898 99999997432211 110 1111 111223332 344444
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC-----Cce----------------eeeeeCCEEEEeeeeCCCcEEEEe
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGF----------------YRYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GL----------------yRYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
.+ ++. +..|+.+||+|+.. .|. -.|+|||++++.. .-.+.|+
T Consensus 440 ~~--------g~~-----~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~~~ 502 (637)
T PRK00174 440 EE--------GNP-----LEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMYFTGDGARRDE----DGYYWIT 502 (637)
T ss_pred CC--------CCC-----CCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEEECCceEEEcC----CCcEEEE
Confidence 22 222 45799999999862 110 1399999999842 3479999
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRCCS 405 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~ 405 (484)
||.++ +.|+++.+.+|+++|.+. .+ +.+.+++.. .......-+.|+++..+ ...+.+..+++.+
T Consensus 503 GR~dd~ik~~G~~v~p~eIE~~l~~~-------~~--V~~~~Vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~~ 570 (637)
T PRK00174 503 GRVDDVLNVSGHRLGTAEIESALVAH-------PK--VAEAAVVGRPDDIKGQGIYAFVTLKGG---EEPSDELRKELRN 570 (637)
T ss_pred EecccEEEeCCEEECHHHHHHHHHhC-------CC--cceEEEEeeEcCCCCeEEEEEEEECCC---CCCCHHHHHHHHH
Confidence 99998 889999999999998753 22 334444331 11111234567776543 1112222233333
Q ss_pred HHHHHhChhHHHhhhcCCCCCcEEEEeC------CChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhcc
Q 011497 406 SLEDAFGSIYKVQRDRGEISPLSVSIVK------PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGC 472 (484)
Q Consensus 406 ~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~------~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~ 472 (484)
.+.+.|. ....|-.+.+|+ .|-..+-.=..+.++.. +.+.+.-+.|++.++.+++.
T Consensus 571 ~l~~~l~---------~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 632 (637)
T PRK00174 571 WVRKEIG---------PIAKPDVIQFAPGLPKTRSGKIMRRILRKIAEGEE--ILGDTSTLADPSVVEKLIEA 632 (637)
T ss_pred HHHhhcC---------CccCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC--CCCCcccccCHHHHHHHHHH
Confidence 3433331 123455666652 33333322122233332 45667778889988887764
No 10
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase. This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
Probab=98.92 E-value=1.1e-06 Score=97.32 Aligned_cols=226 Identities=16% Similarity=0.139 Sum_probs=120.7
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCC--CCccccccccCceeEE-eecCCC---CCCCCcceeccCCceEEEeeec
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGE--VPVLGGDYFASECYVG-INLDIA---QPPQTTRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~--v~~~~~~y~aSEg~~~-i~~~~~---~~~~~~~~~l~~~~~ffEFip~ 271 (484)
++|++| .+||. ..-.+.+.+.++. ++++ ..||.||+... +...+. ..++ ......|+ .-.+.++.
T Consensus 358 ~~lr~i---~~~G~~l~~~~~~~~~~~~~~~~~~i~-~~yG~TE~~~~~~~~~~~~~~~~~~-~~G~p~~g-~~~~i~d~ 431 (625)
T TIGR02188 358 SSLRLL---GSVGEPINPEAWMWYYKVVGKERCPIV-DTWWQTETGGIMITPLPGATPTKPG-SATLPFFG-IEPAVVDE 431 (625)
T ss_pred cceeEE---EEecCCCCHHHHHHHHHHcCCCCCceE-ecccccccCCceeecCCCCCCcCCC-cccCCcCC-ceEEEECC
Confidence 556543 44442 3334556666653 8898 99999996432 211110 1111 11112222 23344442
Q ss_pred CCcCcccCCCceeeccccc-CCceEEEEeccC-----Ccee----------------eeeeCCEEEEeeeeCCCcEEEEe
Q 011497 272 DMEKNEAVGEETVDFSGVE-IGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele-~G~~YeLVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
+ ++ .+. +|+.+||+|+.. .|.| -|+|||++++.. .=.+.|+
T Consensus 432 ~--------g~-----~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~ 494 (625)
T TIGR02188 432 E--------GN-----PVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPGYYFTGDGARRDK----DGYIWIT 494 (625)
T ss_pred C--------CC-----CCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCCEEECCceEEEcC----CCcEEEE
Confidence 1 22 245 789999999873 1111 299999998843 2368899
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEeecCccccCCCHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIREGCTKLRDSVAILRRCCS 405 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~ 405 (484)
||.++ +.|+++.+.+|+++|.+. . + +.+.+|+.- .......-+.||.+..+ ...+.+..+++.+
T Consensus 495 GR~dd~i~~~G~ri~p~eIE~~l~~~-p------~--V~e~~vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~~ 562 (625)
T TIGR02188 495 GRVDDVINVSGHRLGTAEIESALVSH-P------A--VAEAAVVGIPDDIKGQAIYAFVTLKDG---YEPDDELRKELRK 562 (625)
T ss_pred ecccCEEEeCCEEECHHHHHHHHHhC-C------C--cceEEEEeeEcCCCCeEEEEEEEeCCC---CCCCHHHHHHHHH
Confidence 99998 889999999999999853 1 2 334444331 11112234467776543 1112222233333
Q ss_pred HHHHHhChhHHHhhhcCCCCCcEEEEeC------CChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 406 SLEDAFGSIYKVQRDRGEISPLSVSIVK------PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 406 ~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~------~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
.+.+.|. ....|-.|.+|+ .|-..+-.=+.+..|.. .+++.+.-+.|++.++.++.
T Consensus 563 ~~~~~l~---------~~~~P~~i~~v~~lP~t~sGKi~r~~l~~~~~~~~-~~~~~~~~~~~p~~~~~~~~ 624 (625)
T TIGR02188 563 HVRKEIG---------PIAKPDKIRFVPGLPKTRSGKIMRRLLRKIAAGEE-EILGDTSTLEDPSVVEELIE 624 (625)
T ss_pred HHHhhcC---------CCccCcEEEECCCCCCCCCccchHHHHHHHHcCCC-CCCCCcccccCHHHHHHHHh
Confidence 3333331 123455556553 33333322222233431 23666777889999988875
No 11
>PLN02654 acetate-CoA ligase
Probab=98.72 E-value=1.2e-05 Score=90.19 Aligned_cols=156 Identities=16% Similarity=0.108 Sum_probs=90.3
Q ss_pred ccCCceEEEEeccC-----Ccee----------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHH
Q 011497 289 VEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERD 344 (484)
Q Consensus 289 le~G~~YeLVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~ 344 (484)
+..|+.+||+|... .|.| -|++||+.++.. .-.+.|+||.++ +.|++++..+
T Consensus 475 ~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~~~TGD~~~~d~----dG~l~i~GR~dd~I~~~G~ri~p~E 550 (666)
T PLN02654 475 IEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGYYFSGDGCSRDK----DGYYWLTGRVDDVINVSGHRIGTAE 550 (666)
T ss_pred CCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCEEEeCceEEECC----CCcEEEeeeccCeEEeCCEEECHHH
Confidence 44677899999762 1222 289999998842 236899999998 8899999999
Q ss_pred HHHHHHHHHHHhccccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC
Q 011497 345 LMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG 422 (484)
Q Consensus 345 v~~av~~~~~~~~~~~g~~l~~f~~~~--~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g 422 (484)
|+++|.+.. + +.+-+|+. +.. ..-....||.+..+ .....+..+++.+.+.+.| ..
T Consensus 551 IE~~l~~~p-------~--V~eaaVvg~~d~~-~ge~~~a~Vvl~~~---~~~~~~l~~~l~~~~~~~L---------~~ 608 (666)
T PLN02654 551 VESALVSHP-------Q--CAEAAVVGIEHEV-KGQGIYAFVTLVEG---VPYSEELRKSLILTVRNQI---------GA 608 (666)
T ss_pred HHHHHHhCC-------C--eeeEEEEeeEcCC-CCeEEEEEEEECCC---CCCCHHHHHHHHHHHHHhC---------CC
Confidence 999998532 2 33444332 221 11234567766543 1122222223333333333 12
Q ss_pred CCCCcEEEEeC------CChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 423 EISPLSVSIVK------PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 423 ~l~p~~v~~v~------~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
...|-.|.+|+ .|-..+-.=+.+..|. ..+++.+.-+.|++.++.++.
T Consensus 609 ~~~P~~i~~v~~lP~T~sGKi~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 662 (666)
T PLN02654 609 FAAPDKIHWAPGLPKTRSGKIMRRILRKIASRQ-LDELGDTSTLADPGVVDQLIA 662 (666)
T ss_pred CcCCCEEEECCCCCCCCCcCchHHHHHHHHcCC-CCCCCCcccccCHHHHHHHHH
Confidence 33566777763 3322221111222343 236777888999998888764
No 12
>PRK07529 AMP-binding domain protein; Validated
Probab=98.71 E-value=9e-07 Score=98.37 Aligned_cols=133 Identities=12% Similarity=0.109 Sum_probs=82.6
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCC---CCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~---~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
++.|+ ++.+|+ .....+++++.++ ++++ ++||+||+.......+.. .++ ......|+. -+.++..++
T Consensus 332 ~~slr---~v~~gg~~l~~~l~~~~~~~~g-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~-svG~~~p~~-~v~i~~~d~ 404 (632)
T PRK07529 332 ISSLR---YALCGAAPLPVEVFRRFEAATG-VRIV-EGYGLTEATCVSSVNPPDGERRIG-SVGLRLPYQ-RVRVVILDD 404 (632)
T ss_pred ccceE---EEEEcCCCCCHHHHHHHHHHhC-CcEe-eeecccccCcccccCCccccccCC-CcccccCCc-eEEEEEcCC
Confidence 35666 334444 2444466666665 8888 999999975533222211 010 111122332 345554442
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Cce-------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF-------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL-------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
. +. ...++..|+.+||+|++. .|- --|+|||+.++.. .-.+.|+||.++
T Consensus 405 ~------g~--~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGDlg~~d~----dG~l~i~GR~~d~i~ 472 (632)
T PRK07529 405 A------GR--YLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDA----DGYFWLTGRAKDLII 472 (632)
T ss_pred C------Cc--ccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCcEEEEcC----CceEEEEecccCEEE
Confidence 1 21 112356899999999864 221 1489999999843 347899999998
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
+.|+++++.+|++++.+
T Consensus 473 ~~G~~i~p~eIE~~l~~ 489 (632)
T PRK07529 473 RGGHNIDPAAIEEALLR 489 (632)
T ss_pred eCCEEECHHHHHHHHHh
Confidence 88999999999998875
No 13
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.71 E-value=3e-06 Score=90.61 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=93.0
Q ss_pred cCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeE-EeecCCCCC------CCCcceeccCCceEEEee
Q 011497 199 LWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQP------PQTTRFVMLPTAAYFEFL 269 (484)
Q Consensus 199 lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~------~~~~~~~l~~~~~ffEFi 269 (484)
-+++++.| +.+|. ....++.+.+.+ +++++ ..||+||+.. +........ .........|+ ..++.+
T Consensus 279 ~~~~l~~v--~~~Ge~l~~~~~~~~~~~~-~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~ 353 (521)
T PRK06187 279 DFSSLRLV--IYGGAALPPALLREFKEKF-GIDLV-QGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPG-VEARIV 353 (521)
T ss_pred CcchhhEE--EEcCcCCCHHHHHHHHHHh-Ccchh-eeeccCccCcccccCCcccccccccccCCccccccCC-eEEEEE
Confidence 45777753 33333 345556777666 58898 8999999632 221111100 00011112232 235555
Q ss_pred ecCCcCcccCCCceeecccccC--CceEEEEeccC---Cc-eee------------eeeCCEEEEeeeeCCCcEEEEeee
Q 011497 270 PFDMEKNEAVGEETVDFSGVEI--GKMYEVVVTTY---RG-FYR------------YRLGDIVKVVDFYNSSPQVEFVMR 331 (484)
Q Consensus 270 p~~~~~~~~~~~~~l~l~ele~--G~~YeLVvTt~---~G-LyR------------Yr~GDvV~v~g~~~~~P~i~F~gR 331 (484)
+++ +.. +.. |+.+||++++. .| +-+ |++||++++.. ...+.+.||
T Consensus 354 ~~~--------~~~-----~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~tGD~~~~~~----~g~~~~~GR 416 (521)
T PRK06187 354 DDD--------GDE-----LPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHTGDVGYIDE----DGYLYITDR 416 (521)
T ss_pred CCC--------CCC-----CCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceeccceEEEcC----CCCEEEeec
Confidence 533 121 334 99999999986 33 334 99999999844 246889999
Q ss_pred CCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEeec
Q 011497 332 APK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIRE 388 (484)
Q Consensus 332 ~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~vE~~~ 388 (484)
.++ ++|++++..+|++++.+. .+ +.+..++.. .........++++...
T Consensus 417 ~~~~i~~~G~~v~~~~IE~~l~~~-------~~--v~~~~v~~~~~~~~~~~~~~~v~~~~ 468 (521)
T PRK06187 417 IKDVIISGGENIYPRELEDALYGH-------PA--VAEVAVIGVPDEKWGERPVAVVVLKP 468 (521)
T ss_pred ccceEEcCCeEECHHHHHHHHHhC-------CC--ceEEEEEeccCCCcCceEEEEEEECC
Confidence 998 889999999998877643 22 334444332 1111234457777653
No 14
>PRK09274 peptide synthase; Provisional
Probab=98.69 E-value=4.2e-06 Score=90.92 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=84.2
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhC-CCCccccccccCceeEEeecCCCC---------CCCC--cceeccCCce
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAG-EVPVLGGDYFASECYVGINLDIAQ---------PPQT--TRFVMLPTAA 264 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g-~v~~~~~~y~aSEg~~~i~~~~~~---------~~~~--~~~~l~~~~~ 264 (484)
.|+|+.+ .+|| ....++++++.++ +++++ ..||+||+....-..... .... ......|+.
T Consensus 287 ~~~lr~~---~~gG~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~- 361 (552)
T PRK09274 287 LPSLRRV---ISAGAPVPIAVIERFRAMLPPDAEIL-TPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGV- 361 (552)
T ss_pred CchhhEE---EecCCcCCHHHHHHHHHHcCCCceEE-ccccccccceeEeecchhhhccccccccCCCCcccCccCCCc-
Confidence 3667643 4444 3556677888887 48998 999999974321111100 0000 011122332
Q ss_pred EEEeeecCCcCcccCCCceeecccccCCceEEEEeccC---------------------CceeeeeeCCEEEEeeeeCCC
Q 011497 265 YFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---------------------RGFYRYRLGDIVKVVDFYNSS 323 (484)
Q Consensus 265 ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---------------------~GLyRYr~GDvV~v~g~~~~~ 323 (484)
-...++..+. ..+..=.-.++..|+.+||+|... .|-.+|+|||++++.. .
T Consensus 362 ~~~ivd~~~~----~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~~~g~~w~~TGDlg~~d~----d 433 (552)
T PRK09274 362 EVRIIAISDA----PIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPEATRLAKIPDGQGDVWHRMGDLGYLDA----Q 433 (552)
T ss_pred eEEEEecccc----ccccccccccCCCCCeeEEEEecCcccccccCChHHhhhhhcccCCCCcEEEcCCEEEEcc----C
Confidence 3445553321 000000123456899999999542 1224899999998843 3
Q ss_pred cEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 324 PQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 324 P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 434 G~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (552)
T PRK09274 434 GRLWFCGRKAHRVETAGGTLYTIPCERIFNTH 465 (552)
T ss_pred CcEEEEeccCCeEEECCEEECcHHHHHHHHhC
Confidence 47899999998 889999999999988864
No 15
>PRK04319 acetyl-CoA synthetase; Provisional
Probab=98.69 E-value=4.6e-06 Score=91.23 Aligned_cols=129 Identities=16% Similarity=0.130 Sum_probs=79.3
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeE-E-eecCC-CCCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYV-G-INLDI-AQPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~-i~~~~-~~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
+++|+++ .+|| + ......+++.++ ++++ ..||+||+.. . .+... ...++ ......|+ ...+.++.+
T Consensus 322 ~~~lr~~---~~gG~~l~~~~~~~~~~~~g-~~i~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~p~~g-~~~~i~d~~- 393 (570)
T PRK04319 322 LSSLRHI---LSVGEPLNPEVVRWGMKVFG-LPIH-DNWWMTETGGIMIANYPAMDIKPG-SMGKPLPG-IEAAIVDDQ- 393 (570)
T ss_pred cccceEE---EEcccCCCHHHHHHHHHHhC-CCeE-eceeecccCCEEEecCCCCCCCCC-cCcCCCCC-CEEEEECCC-
Confidence 4667643 4444 2 334455666566 7888 9999999642 2 21110 11111 11112233 345555533
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC-----Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+. ++.+|+.+||+|+.. .|.| -|++||++++.. .-.+.|+||.++
T Consensus 394 -------~~-----~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~~~~----~g~l~~~GR~~d~ 457 (570)
T PRK04319 394 -------GN-----ELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDE----DGYFWFQGRVDDV 457 (570)
T ss_pred -------CC-----CCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEEECC----CeeEEEEecCCCE
Confidence 11 246899999999752 1322 389999999843 237889999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++++.+|++++.+.
T Consensus 458 i~~~G~~i~p~eIE~~l~~~ 477 (570)
T PRK04319 458 IKTSGERVGPFEVESKLMEH 477 (570)
T ss_pred EEECCEEECHHHHHHHHhhC
Confidence 789999999999988764
No 16
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1. This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
Probab=98.67 E-value=5.1e-06 Score=88.84 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=80.6
Q ss_pred cCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC-CCC-----CCcceeccCCceEEEeee
Q 011497 199 LWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QPP-----QTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 199 lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~-~~~-----~~~~~~l~~~~~ffEFip 270 (484)
-+|.++.+ +.+|. .....+++.+.+++++++ .+||+||+...+..... .+. ....-...|+. -...++
T Consensus 256 ~~~~l~~~--~~~G~~~~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~-~~~i~~ 331 (502)
T TIGR01734 256 NYPHLTHF--LFCGEELPVKTAKALLERFPKATIY-NTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDM-NLFIMD 331 (502)
T ss_pred cCCcccEE--EEcCCcCCHHHHHHHHHHCCCcEEE-eCccCCcceEEEEEEEccccccccCCccccccccCCC-EEEEEC
Confidence 35777644 23343 345557777778889998 99999996443321110 000 00000011111 111121
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccCC---ce-----------------eeeeeCCEEEEeeeeCCCcEEEEee
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF-----------------YRYRLGDIVKVVDFYNSSPQVEFVM 330 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL-----------------yRYr~GDvV~v~g~~~~~P~i~F~g 330 (484)
. ++.. +..|+..||++.+.+ |. .-|+|||+.++.. . .+.|+|
T Consensus 332 ~--------~~~~-----~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~TGDlg~~~~---~--~l~i~G 393 (502)
T TIGR01734 332 E--------EGEP-----LPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAYRTGDAGTITD---G--QLFYQG 393 (502)
T ss_pred C--------CCCC-----CCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEEECCCEEEEEC---C--EEEEec
Confidence 1 1222 447889999997742 11 1389999999853 3 999999
Q ss_pred eCCC---cceeecCHHHHHHHHHHH
Q 011497 331 RAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 331 R~~~---i~gEkl~e~~v~~av~~~ 352 (484)
|.++ +.|+|+++.+|++++.+.
T Consensus 394 R~~d~i~~~G~~v~~~~IE~~l~~~ 418 (502)
T TIGR01734 394 RLDFQIKLHGYRIELEDIEFNLRQS 418 (502)
T ss_pred cccCeEEECcEEeCHHHHHHHHHcC
Confidence 9998 889999999999988864
No 17
>PRK07788 acyl-CoA synthetase; Validated
Probab=98.64 E-value=2.6e-06 Score=92.65 Aligned_cols=129 Identities=12% Similarity=0.011 Sum_probs=80.4
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC---CCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA---QPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~---~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
.|+|+. +..|| .....+++++.++ .+++ +.||+||+.+..-..+. ..+. ......++. -++.++.+
T Consensus 322 ~~~lr~---i~~gG~~l~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~-~vG~~~~~~-~~~i~d~~- 393 (549)
T PRK07788 322 TSSLKI---IFVSGSALSPELATRALEAFG-PVLY-NLYGSTEVAFATIATPEDLAEAPG-TVGRPPKGV-TVKILDEN- 393 (549)
T ss_pred CCceeE---EEEeCCCCCHHHHHHHHHHhC-ccce-eccCcchhchhhccChhhhhhcCC-CcccCCCCc-EEEEECCC-
Confidence 366664 34444 2444566666666 6777 89999996432111111 0010 112223333 34555432
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCCceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cce
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 337 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~g 337 (484)
++. +..|+.+||+|++..-+-+ |+|||+++... .-.+.|+||.++ +.|
T Consensus 394 -------~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G 457 (549)
T PRK07788 394 -------GNE-----VPRGVVGRIFVGNGFPFEGYTDGRDKQIIDGLLSSGDVGYFDE----DGLLFVDGRDDDMIVSGG 457 (549)
T ss_pred -------cCC-----CCCCCeEEEEEeCCCccccccCCCcccccCCceecCceEEEcC----CCCEEEeccCcceEEECC
Confidence 222 4579999999998643322 68999987743 347899999998 889
Q ss_pred eecCHHHHHHHHHHH
Q 011497 338 EIISERDLMSAMESF 352 (484)
Q Consensus 338 Ekl~e~~v~~av~~~ 352 (484)
+|+++.+|++++.+.
T Consensus 458 ~~v~p~eIE~~l~~~ 472 (549)
T PRK07788 458 ENVFPAEVEDLLAGH 472 (549)
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999998753
No 18
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Probab=98.62 E-value=2.5e-05 Score=86.53 Aligned_cols=229 Identities=15% Similarity=0.068 Sum_probs=118.3
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEe-ecCCCC--CCCC--cceeccCCceEEEeeecC
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQ--PPQT--TRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i-~~~~~~--~~~~--~~~~l~~~~~ffEFip~~ 272 (484)
+.|+. +.+|+. ....+.+++.++ ++++ ..||.||+...+ ...+.. .+.. ......|+. -.+.++.+
T Consensus 355 ~~lr~---i~~~Ge~l~~~~~~~~~~~~~-~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~-~~~i~d~~ 428 (629)
T PRK10524 355 SSLRA---LFLAGEPLDEPTASWISEALG-VPVI-DNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGY-NVKLLNEV 428 (629)
T ss_pred hheeE---EEEeCCCCCHHHHHHHHHhcC-CCeE-eccccccccchhhcCCCCcccCcCCCCCcccCcCCc-eEEEEeCC
Confidence 55654 355542 333455666665 8888 999999974211 111110 0000 011122222 24445432
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccCC------ce-----------------eeeeeCCEEEEeeeeCCCcEEEEe
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTYR------GF-----------------YRYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~------GL-----------------yRYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
+ +++ +..|+.+||+|+... |+ .-|++||++++.. .-.+.|+
T Consensus 429 ~-------g~~-----~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~----dG~l~i~ 492 (629)
T PRK10524 429 T-------GEP-----CGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQVYSTFDWGIRDA----DGYYFIL 492 (629)
T ss_pred C-------CCC-----CCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCcEEEcCCcEEEcC----CCcEEEE
Confidence 2 332 458999999998641 11 1399999998732 3378999
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCC-CCceEEEEEEeecCccccCCCHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLES-SPKKLMIFVEIREGCTKLRDSVAILRRCCS 405 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~-~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~ 405 (484)
||.++ +.|+++...+|+++|.+. .+ +.+.+++.-... .....+.|+....+.. ..+....+.+.+
T Consensus 493 GR~dd~i~~~G~ri~p~eIE~~l~~~-------p~--V~e~~vvg~~d~~~g~~~~~~vv~~~~~~--~~~~~~~~~~~~ 561 (629)
T PRK10524 493 GRTDDVINVAGHRLGTREIEESISSH-------PA--VAEVAVVGVKDALKGQVAVAFVVPKDSDS--LADREARLALEK 561 (629)
T ss_pred EEecCeEEeCCEEeCHHHHHHHHHhC-------CC--cceEEEEccccCCCCeEEEEEEEECCCCc--cccccchHHHHH
Confidence 99998 889999999999999753 22 334444331111 1123345665543210 001011112233
Q ss_pred HHHHHhChhHHHhhhcC-CCCCcEEEEeC------CChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 406 SLEDAFGSIYKVQRDRG-EISPLSVSIVK------PGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 406 ~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~------~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
+|.+.+ ..+ .+ ...|-+|.+|+ .|-..+-.=..+..|.. .+.+.-+.|++.++.++.
T Consensus 562 ~i~~~~-----~~~-l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~---~~~~~~~~~~~~~~~~~~ 625 (629)
T PRK10524 562 EIMALV-----DSQ-LGAVARPARVWFVSALPKTRSGKLLRRAIQAIAEGRD---PGDLTTIEDPAALQQIRQ 625 (629)
T ss_pred HHHHHH-----Hhh-cCCCcCCCEEEEcCCCCCCCCcchHHHHHHHHHcCCC---CCCcccccCHHHHHHHHH
Confidence 333333 111 22 34566677664 23322222122233443 445666778998888765
No 19
>TIGR02316 propion_prpE propionate--CoA ligase. This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
Probab=98.56 E-value=4.3e-05 Score=84.88 Aligned_cols=130 Identities=10% Similarity=0.030 Sum_probs=77.9
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeEEe-ecCCCC-----CCCCcceeccCCceEEEeee
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQ-----PPQTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i-~~~~~~-----~~~~~~~~l~~~~~ffEFip 270 (484)
.+.|+++ .+|| + ......+++.++ .+++ ..||.||....+ ...+.. ..+ ......|+. -...++
T Consensus 353 l~~lr~~---~~gGe~l~~~~~~~~~~~~~-~~~~-~~yG~TE~~~~~~~~~~~~~~~~~~~g-s~G~p~~g~-~v~i~d 425 (628)
T TIGR02316 353 LSSLHWL---FLAGEPLDEPTAHWITDGLG-KPVI-DNYWQTETGWPVLAIMPGLDLKPVKLG-SPGLPMYGY-HLRVLD 425 (628)
T ss_pred ccceeEE---EEecCCCCHHHHHHHHHHhC-CCEE-ecccccccCceeecCCCCCCcCCCCCC-CcccCcCCc-eEEEEE
Confidence 3566644 3333 2 333455556565 7788 999999975322 111110 001 111122332 233444
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC------Ccee-----------------eeeeCCEEEEeeeeCCCcEEE
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY------RGFY-----------------RYRLGDIVKVVDFYNSSPQVE 327 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~------~GLy-----------------RYr~GDvV~v~g~~~~~P~i~ 327 (484)
.++ +++ +..|+.+||+|+.. .|.| .|++||++++.. .=.+.
T Consensus 426 ~~~-------g~~-----~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~g~~d~----dG~l~ 489 (628)
T TIGR02316 426 EAT-------GRP-----CGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRPLYSSFDWGIRDE----DGYTF 489 (628)
T ss_pred CCC-------CCC-----CCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCCEEECCceEEEcC----CCcEE
Confidence 321 333 44788999999764 2222 499999998743 23589
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 328 FVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 328 F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
|+||.|+ +.|+++...+|+++|.+.
T Consensus 490 i~GR~dd~ik~~G~rv~~~eIE~~l~~~ 517 (628)
T TIGR02316 490 ILGRTDDVINVAGHRLGTREIEESVSSH 517 (628)
T ss_pred EEEcCcceEEeCCEEeCHHHHHHHHHhC
Confidence 9999998 889999999999998753
No 20
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=98.41 E-value=6.2e-05 Score=81.73 Aligned_cols=186 Identities=16% Similarity=0.110 Sum_probs=107.9
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCC--CCCCcceeccCCceEEEeeecCC
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
-.+.|+++ .+.| -..-...+.+.+| +++. ++||.||... +.+.+.. .++ +.....|.. -.+-++.+
T Consensus 288 dlssLr~~---~SaGEPLnpe~~~w~~~~~g-~~i~-d~~gqTEtg~-~~~~~~~~~~~g-~~g~p~pG~-~~~vvdd~- 358 (528)
T COG0365 288 DLSSLRVL---GSAGEPLNPEAFEWFYSALG-VWIL-DIYGQTETGM-GFIAGRPPVKNG-SSGLPLPGY-AVRRVDDE- 358 (528)
T ss_pred cchhheee---eccCCCCCHHHHHHHHHHhC-CCEe-ccccccccCc-cccCCCCCcCCC-CCCCCCCCc-eeEEECCC-
Confidence 34556543 3333 2344455666677 9999 9999999762 2122221 121 223333443 25555543
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC-----Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
++. +.+|+ ++|||... -|+|+ |.+||.....- -=.|.|+||.|+
T Consensus 359 -------g~~-----~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~De----dGy~~i~GR~DDv 421 (528)
T COG0365 359 -------GNP-----VPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDE----DGYFWLHGRSDDV 421 (528)
T ss_pred -------CCc-----CCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEEcc----CCCEEEEeeccce
Confidence 232 34788 99999965 23565 99999888743 358999999999
Q ss_pred --cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCc-eEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 011497 335 --SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPK-KLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 411 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~-~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L 411 (484)
+.|-++...+|+++|.+.-. +.+-+|+.-.....+ .-..||=++.+ ..+. ++.++|.+.+
T Consensus 422 I~vsG~Rig~~EvE~~l~~hP~---------VaEaAvVg~pd~~kg~~v~afVvL~~g-----~~~~---~L~~ei~~~v 484 (528)
T COG0365 422 IKVSGKRIGPLEIESVLLAHPA---------VAEAAVVGVPDPGKGQIVLAFVVLAAG-----VEPN---ELAEEIRRHV 484 (528)
T ss_pred EeccCeeccHHHHHHHHHhCcc---------eeeeEEEeccCCCCCcEEEEEEEecCC-----CChH---HHHHHHHHHH
Confidence 88999999999999986422 334444331111122 12356656654 2222 4455555544
Q ss_pred ChhHHHhhhcCC-CCCcEEEEeC
Q 011497 412 GSIYKVQRDRGE-ISPLSVSIVK 433 (484)
Q Consensus 412 n~~Y~~~R~~g~-l~p~~v~~v~ 433 (484)
+ +..+- -.|.+|.+|+
T Consensus 485 ----r--~~~~~~~~p~~i~fv~ 501 (528)
T COG0365 485 ----A--RNIGPHAIPRKIRFVD 501 (528)
T ss_pred ----H--hccCcccCCceEEEec
Confidence 1 12232 3677788874
No 21
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.33 E-value=2.3e-05 Score=93.91 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=78.3
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC--------CcceeccCCceEEEee
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ--------TTRFVMLPTAAYFEFL 269 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~--------~~~~~l~~~~~ffEFi 269 (484)
++++.| +.|| .....+++++.+ +++++ +.||.||+.+.....+..+.. .......++..+ ..+
T Consensus 717 ~~lr~i---~~gGe~l~~~~~~~~~~~~-~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~-~i~ 790 (1296)
T PRK10252 717 ASLRQV---FCSGEALPADLCREWQQLT-GAPLH-NLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGL-RIL 790 (1296)
T ss_pred CCccEE---EEecCCCCHHHHHHHHhcC-CCEEE-eCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEE-EEE
Confidence 566644 4443 233345555555 48888 999999975433222111100 001112223322 223
Q ss_pred ecCCcCcccCCCceeecccccCCceEEEEeccCC---cee--------------------eeeeCCEEEEeeeeCCCcEE
Q 011497 270 PFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY--------------------RYRLGDIVKVVDFYNSSPQV 326 (484)
Q Consensus 270 p~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy--------------------RYr~GDvV~v~g~~~~~P~i 326 (484)
+. +.+. +..|+.+||+|+..+ |-| -|||||++++.. .-.+
T Consensus 791 d~--------~~~~-----~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~~~~y~TGDl~~~~~----~G~l 853 (1296)
T PRK10252 791 DA--------RMRP-----VPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLD----DGAV 853 (1296)
T ss_pred CC--------CCCC-----CCCCCceEEEecccccchhhCCCcccchhhcccCCCCCCCEEEecCceEEEcC----CCcE
Confidence 21 1222 458999999998742 211 399999998843 2378
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 327 EFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 327 ~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+||.|+ ++|+++...+|+.+|.+.
T Consensus 854 ~~~GR~d~~ik~~G~ri~~~eIE~~l~~~ 882 (1296)
T PRK10252 854 EYLGRSDDQLKIRGQRIELGEIDRAMQAL 882 (1296)
T ss_pred EEecccCCeEEEeeEEecHHHHHHHHHhC
Confidence 99999998 999999999999999864
No 22
>PRK06060 acyl-CoA synthetase; Validated
Probab=98.33 E-value=2.4e-05 Score=88.11 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=82.3
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC--CCCCCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
+++|+ ++.+|| .....+++.+.+++++++ +.||.||+......... ..+. ......++. .++.++.+
T Consensus 259 ~~slr---~i~~gGe~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~-~iG~p~~~~-~v~i~d~~-- 330 (705)
T PRK06060 259 FRSLR---CVVSAGEALELGLAERLMEFFGGIPIL-DGIGSTEVGQTFVSNRVDEWRLG-TLGRVLPPY-EIRVVAPD-- 330 (705)
T ss_pred cccee---EEEEecCcCCHHHHHHHHHHcCCCceE-eeeeccccCceEEeccCCCCCcC-cccccCCCc-EEEEECCC--
Confidence 35666 345444 244456777888889999 99999997432211111 0010 112223333 34445432
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee-----------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cce
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 337 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-----------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~g 337 (484)
+++ +..|+.+||+|+.. .|.| -|+|||++++.. .-.+.|+||.++ +.|
T Consensus 331 ------g~~-----~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G 395 (705)
T PRK06060 331 ------GTT-----AGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDS----DGWVTYRCRADDTEVIGG 395 (705)
T ss_pred ------CCC-----CCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECC----CceEEEecccCceEEECC
Confidence 222 34799999999863 2222 399999998743 236999999998 889
Q ss_pred eecCHHHHHHHHHHH
Q 011497 338 EIISERDLMSAMESF 352 (484)
Q Consensus 338 Ekl~e~~v~~av~~~ 352 (484)
+++...+|+.+|.+.
T Consensus 396 ~~v~~~eIE~~l~~~ 410 (705)
T PRK06060 396 VNVDPREVERLIIED 410 (705)
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999888753
No 23
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Probab=98.33 E-value=4.1e-05 Score=86.32 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCceEEEEecCch--hhhH-HHHHHHhCCCCccccccccCceeEEeecCC--CCCCCCcceeccCCceEEEeeecCCcC
Q 011497 201 PNVRYIKCVTTGSM--SQYC-SKIKYYAGEVPVLGGDYFASECYVGINLDI--AQPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 201 P~L~~i~~~~~G~~--~~y~-~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~--~~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
++++ .+.+||. .+-. ..++..+| ++++ .+||.||+..+..... ....+ ......|+ .-...+++++.
T Consensus 420 ~~lr---~i~~GGapl~~~~~~~~~~~~g-~~v~-~~YG~TEt~~~~~~~~~~~~~~g-svG~p~p~-~evkivd~~~~- 491 (696)
T PLN02387 420 GRIR---FMLSGGAPLSGDTQRFINICLG-APIG-QGYGLTETCAGATFSEWDDTSVG-RVGPPLPC-CYVKLVSWEEG- 491 (696)
T ss_pred CcEE---EEEEcCCCCCHHHHHHHHHHcC-CCee-EeechhhcccceeecCcccCCCC-ccCCCCCc-eEEEEeecccc-
Confidence 4555 3455553 2222 22333444 8888 9999999753321111 11111 11112222 23556654332
Q ss_pred cccCCCceeecccccCCceEEEEeccC---Ccee------------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy------------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
+..+. -+++..+||+|... .|-| -|+|||+.++.. .-.+.|+||.++
T Consensus 492 -----~~~~~---~~~~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~----dG~l~i~gR~kd 559 (696)
T PLN02387 492 -----GYLIS---DKPMPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHP----DGCLEIIDRKKD 559 (696)
T ss_pred -----CcccC---CCCCCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECC----CCcEEEEEcccc
Confidence 11110 12334578888653 3322 589999999843 236999999998
Q ss_pred ---cc-eeecCHHHHHHHHHH
Q 011497 335 ---SS-FEIISERDLMSAMES 351 (484)
Q Consensus 335 ---i~-gEkl~e~~v~~av~~ 351 (484)
+. ||++++.+|++++.+
T Consensus 560 ~ik~~~Ge~I~p~eIE~~l~~ 580 (696)
T PLN02387 560 IVKLQHGEYVSLGKVEAALSV 580 (696)
T ss_pred eEECCCCeEEchHHHHHHHhc
Confidence 43 899999999998874
No 24
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=98.33 E-value=3e-05 Score=86.67 Aligned_cols=229 Identities=14% Similarity=0.100 Sum_probs=120.7
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCC--CCCcceeccCCceEEEeeecCCcC
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP--PQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~--~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
++|+.| .+||. ....+.+++.+| ++++ +.||.||+...+-...... +........|+ .-.+.++.+
T Consensus 380 ~~Lr~i---~~~G~~l~~~~~~~~~~~~g-~~i~-~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g-~~~~i~d~~--- 450 (647)
T PTZ00237 380 SNLKEI---WCGGEVIEESIPEYIENKLK-IKSS-RGYGQTEIGITYLYCYGHINIPYNATGVPSIF-IKPSILSED--- 450 (647)
T ss_pred chheEE---EecCccCCHHHHHHHHHhcC-CCEE-eeechHHhChhhhccCCCCCCCCCCCccCcCC-ceEEEECCC---
Confidence 567644 44442 333455666666 8888 9999999753221111000 00011112222 223444421
Q ss_pred cccCCCceeecccccCCceEEEEeccC------Ccee---------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY------RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~------~GLy---------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
++ ++..|+.+||+++.. .|+| .|++||+.++.. .-.+.|+||.|+
T Consensus 451 -----g~-----~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGDlg~~d~----dG~l~i~GR~dd 516 (647)
T PTZ00237 451 -----GK-----ELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGDLGFKDE----NGYYTIVSRSDD 516 (647)
T ss_pred -----CC-----CCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCcEEEECC----CCeEEEEeccCC
Confidence 22 245899999999743 3444 399999998842 346899999998
Q ss_pred ---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHH
Q 011497 335 ---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLED 409 (484)
Q Consensus 335 ---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~--~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~ 409 (484)
+.|++++..+|+++|.+.. + +.+-+++. +.. .....+.||-+..+......+ .+++.++|.+
T Consensus 517 ~i~~~G~rI~p~eIE~~l~~~p-------~--V~eaavvg~~~~~-~g~~~~a~Vv~~~~~~~~~~~---~~~l~~~i~~ 583 (647)
T PTZ00237 517 QIKISGNKVQLNTIETSILKHP-------L--VLECCSIGIYDPD-CYNVPIGLLVLKQDQSNQSID---LNKLKNEINN 583 (647)
T ss_pred EEEECCEEeCHHHHHHHHHhCC-------C--ceeeEEEeeEcCC-CCCEEEEEEEeccCccccCCC---HHHHHHHHHH
Confidence 8899999999999998532 1 33333332 211 112334566554210000112 1223333333
Q ss_pred HhChhHHHhhhcC-CCCCcEEEEeCC---ChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 410 AFGSIYKVQRDRG-EISPLSVSIVKP---GTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 410 ~Ln~~Y~~~R~~g-~l~p~~v~~v~~---gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
.+ ..+ .+ .-.|-+|.+|+. -.-.+.++..+.+=....++..|.-+.|++.++.+++
T Consensus 584 ~~-----~~~-l~~~~~P~~i~~v~~lP~T~sGKi~R~~Lr~~~~~~~~~~~~~~~~~~~~~~~~~ 643 (647)
T PTZ00237 584 II-----TQD-IESLAVLRKIIIVNQLPKTKTGKIPRQIISKFLNDSNYQLPDNVNDSEIFYKIKE 643 (647)
T ss_pred HH-----Hhh-cCccccCcEEEEcCCCCCCCCccEeHHHHHHHHcCCCCCCCccccCHHHHHHHHH
Confidence 22 111 12 235556666553 1111222222222112237888999999999998865
No 25
>PRK10946 entE enterobactin synthase subunit E; Provisional
Probab=98.30 E-value=0.00014 Score=78.90 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=76.7
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC----CCcceeccCCceEEEeeecC
Q 011497 200 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP----QTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 200 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~----~~~~~~l~~~~~ffEFip~~ 272 (484)
.+++++ +..|+. ....+++.+.++ ++++ ..||.||+.+..... ..+. ......+.|+. ..+.++.
T Consensus 299 ~~~l~~---v~~gg~~l~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~-~~~~~~~~~~~G~p~~~~~-~v~i~d~- 370 (536)
T PRK10946 299 LASLKL---LQVGGARLSETLARRIPAELG-CQLQ-QVFGMAEGLVNYTRL-DDSDERIFTTQGRPMSPDD-EVWVADA- 370 (536)
T ss_pred ccceeE---EEECCCCCCHHHHHHHHHhcC-CeEE-EeecccccceeeecC-CCccccccccCCcccCCCc-eEEEECC-
Confidence 366664 454542 333345555555 8888 999999976543211 1100 00011111221 2222221
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+++ .+..|+..||+++.. .|.| -|+|||+.+... .=.+.|+||.++
T Consensus 371 -------~~~-----~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~~d~----~G~l~~~gR~~d~ 434 (536)
T PRK10946 371 -------DGN-----PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDP----DGYITVVGREKDQ 434 (536)
T ss_pred -------CCC-----CCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEEECC----CCcEEEeccccce
Confidence 122 245899999999763 2222 399999998853 225889999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~ 351 (484)
+.|++++..+|+.+|.+
T Consensus 435 i~~~G~~v~~~eiE~~l~~ 453 (536)
T PRK10946 435 INRGGEKIAAEEIENLLLR 453 (536)
T ss_pred eecCCEEEcHHHHHHHHHh
Confidence 88999999999998875
No 26
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.29 E-value=1.1e-05 Score=97.41 Aligned_cols=42 Identities=21% Similarity=0.199 Sum_probs=35.8
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
-|+|||++++.. .=.+.|+||.|+ ++|+++...+|+.+|.+.
T Consensus 679 ~y~TGDlg~~~~----dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~ 723 (1389)
T TIGR03443 679 LYRTGDLGRYLP----DGNVECCGRADDQVKIRGFRIELGEIDTHLSQH 723 (1389)
T ss_pred eeecCCceeEcC----CCCEEEecccCCEEEeCcEEecHHHHHHHHHhC
Confidence 499999998843 236999999998 999999999999998853
No 27
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Probab=98.28 E-value=9e-05 Score=81.61 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=78.0
Q ss_pred CCCCceEEEEecCc-hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccC----CceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS-MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLP----TAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~-~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~----~~~ffEFip~~~~ 274 (484)
.++++++ .+++ ...-.+++.+.+|...++ +.||.||+.+.+..-... ++.... ..+ ...+..+-+ +..
T Consensus 313 ~~~l~~~---~g~~l~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~-~~~~g~-~~~~~~~~~~~~~~~~-~~~ 385 (600)
T PRK08279 313 DHRLRLM---IGNGLRPDIWDEFQQRFGIPRIL-EFYAASEGNVGFINVFNF-DGTVGR-VPLWLAHPYAIVKYDV-DTG 385 (600)
T ss_pred CcceeEE---ecCCCCHHHHHHHHHHhCcceee-eeecccccceeecccCCC-Cccccc-ccccccccceeeeecc-CcC
Confidence 3555533 3333 345567777778855677 999999976544211111 111111 122 122222211 110
Q ss_pred CcccCCCceeecccccCCceEEEEec--cC---Cc-------------------eeeeeeCCEEEEeeeeCCCcEEEEee
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVT--TY---RG-------------------FYRYRLGDIVKVVDFYNSSPQVEFVM 330 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvT--t~---~G-------------------LyRYr~GDvV~v~g~~~~~P~i~F~g 330 (484)
.. -....-.+.++..|+..|+++. .. .| ---|+|||++++.. .-.+.|+|
T Consensus 386 ~~--i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY~~~~~t~~~~~~~~~~~~~~~~~TGDlg~~~~----dG~l~~~G 459 (600)
T PRK08279 386 EP--VRDADGRCIKVKPGEVGLLIGRITDRGPFDGYTDPEASEKKILRDVFKKGDAWFNTGDLMRDDG----FGHAQFVD 459 (600)
T ss_pred ce--eeCCCCccccCCCCCceeEEEEecCcccccccCCchhhHHHHhhcccCCCCceEeecceEEEcC----CccEEEec
Confidence 00 0000112234678888998742 11 11 11389999988853 22689999
Q ss_pred eCCC---cceeecCHHHHHHHHHH
Q 011497 331 RAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 331 R~~~---i~gEkl~e~~v~~av~~ 351 (484)
|.++ +.|+|+...+|++++.+
T Consensus 460 R~~d~ik~~G~~i~p~eIE~~l~~ 483 (600)
T PRK08279 460 RLGDTFRWKGENVATTEVENALSG 483 (600)
T ss_pred ccCCeEEECCcccCHHHHHHHHhc
Confidence 9998 88999999999999886
No 28
>PLN02860 o-succinylbenzoate-CoA ligase
Probab=98.22 E-value=3.9e-05 Score=83.88 Aligned_cols=58 Identities=10% Similarity=0.188 Sum_probs=45.9
Q ss_pred CCceEEEEeccCC---cee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHH
Q 011497 291 IGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 350 (484)
Q Consensus 291 ~G~~YeLVvTt~~---GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~ 350 (484)
+|+..||+|...+ |.| -|+|||+.++.. .=.+.|+||.++ +.|+++++.+|++++.
T Consensus 382 ~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~ 457 (563)
T PLN02860 382 SSRVGRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDK----AGNLWLIGRSNDRIKTGGENVYPEEVEAVLS 457 (563)
T ss_pred CCceeEEEEecCcccccccCCccccchhccCCCeEEccceEEEcC----CCCEEEeecccceeEECCEEccHHHHHHHHH
Confidence 6889999997753 221 379999998842 236889999998 8899999999999887
Q ss_pred HH
Q 011497 351 SF 352 (484)
Q Consensus 351 ~~ 352 (484)
+.
T Consensus 458 ~~ 459 (563)
T PLN02860 458 QH 459 (563)
T ss_pred hC
Confidence 53
No 29
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=98.19 E-value=0.0002 Score=79.90 Aligned_cols=226 Identities=14% Similarity=0.130 Sum_probs=121.0
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhC-CCCccccccccCceeEEeecC-CCCCCCCc-ceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAG-EVPVLGGDYFASECYVGINLD-IAQPPQTT-RFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g-~v~~~~~~y~aSEg~~~i~~~-~~~~~~~~-~~~l~~~~~ffEFip~~~~ 274 (484)
+.|+ ++.+||. ......+.+.++ +++++ ..||.||....+... +..+...+ .....|+. -...++.+
T Consensus 383 ~sLr---~i~~~Ge~l~~~~~~~~~~~~~~~~~~~-~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~-~~~ivd~~-- 455 (655)
T PRK03584 383 SALR---TIGSTGSPLPPEGFDWVYEHVKADVWLA-SISGGTDICSCFVGGNPLLPVYRGEIQCRGLGM-AVEAWDED-- 455 (655)
T ss_pred hheE---EEEEecCCCCHHHHHHHHHHhCCCceEE-eccChHhhhcccccCCCCCCcCCCccCCCcCCc-eeEEECCC--
Confidence 4454 4455542 334456666664 58888 999999963222111 11000001 11122222 12233321
Q ss_pred CcccCCCceeecccccCCceEEEEeccC-----Ccee------------------eeeeCCEEEEeeeeCCCcEEEEeee
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMR 331 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GLy------------------RYr~GDvV~v~g~~~~~P~i~F~gR 331 (484)
+.. + .|+.+||+|... .|.| -|++||++++.. .-.+.|+||
T Consensus 456 ------g~~-----~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR 519 (655)
T PRK03584 456 ------GRP-----V-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVWRHGDWIEITE----HGGVVIYGR 519 (655)
T ss_pred ------CCC-----C-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEeecCCeEEECC----CCeEEEEee
Confidence 222 3 688899999863 2322 278999998842 237899999
Q ss_pred CCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHH
Q 011497 332 APK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSL 407 (484)
Q Consensus 332 ~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~l 407 (484)
.|+ +.|+++...+|+.+|.+. .+ +.+.+++. +........+.||++..+ ...+.+..+++.+.+
T Consensus 520 ~dd~Ik~~G~rI~p~EIE~~l~~~-------p~--V~ea~vvg~~~~~~g~~~~a~vv~~~~---~~~~~~~~~~l~~~~ 587 (655)
T PRK03584 520 SDATLNRGGVRIGTAEIYRQVEAL-------PE--VLDSLVIGQEWPDGDVRMPLFVVLAEG---VTLDDALRARIRTTI 587 (655)
T ss_pred ccCeeecCcEEECHHHHHHHHHhC-------CC--cceEEEEeeEcCCCCEEEEEEEEECCC---CCCcHHHHHHHHHHH
Confidence 998 889999999999988853 12 33444332 111122345678887643 112222223333334
Q ss_pred HHHhChhHHHhhhcCCCCCcEEEEeC------CChHH-HHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 408 EDAFGSIYKVQRDRGEISPLSVSIVK------PGTFD-RLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 408 d~~Ln~~Y~~~R~~g~l~p~~v~~v~------~gtf~-~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
.+.|. ....|-.|.+|+ .|-.. +.++. +..|...+|...+.-+.|++.++.+..
T Consensus 588 ~~~L~---------~~~~P~~i~~v~~lP~t~sGKi~r~~lr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (655)
T PRK03584 588 RTNLS---------PRHVPDKIIAVPDIPRTLSGKKVELPVKK-LLHGRPVKKAVNRDALANPEALDWFAD 648 (655)
T ss_pred HhhCC---------CCcCCCEEEECCCCCCCCCccchHHHHHH-HHcCCCCCCCCCcccccCHHHHHHHHH
Confidence 33331 123566677764 23222 22222 234666666656777888988887754
No 30
>PRK12467 peptide synthase; Provisional
Probab=98.19 E-value=3.6e-05 Score=101.37 Aligned_cols=118 Identities=15% Similarity=0.178 Sum_probs=74.3
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCC---CCCCC--CcceeccCCceEEEeeecCCcCcccCCCceeecccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI---AQPPQ--TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGV 289 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~---~~~~~--~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~el 289 (484)
....+++++.+++++++ +.||.||+.+.+.... ..... .......++.. +..++.+ .+. +
T Consensus 785 ~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~~--------~~~-----v 849 (3956)
T PRK12467 785 VDLLARVRALGPGARLI-NHYGPTETTVGVSTYELSDEERDFGNVPIGQPLANLG-LYILDHY--------LNP-----V 849 (3956)
T ss_pred HHHHHHHHHhCCCCEEE-eCcCCChhhhheeeEecccccccCCCCcccCCcCCCE-EEEECCC--------CCC-----C
Confidence 34445666666679999 9999999855332111 11000 00111223332 2223221 222 4
Q ss_pred cCCceEEEEeccC---Cce---------------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCH
Q 011497 290 EIGKMYEVVVTTY---RGF---------------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISE 342 (484)
Q Consensus 290 e~G~~YeLVvTt~---~GL---------------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e 342 (484)
.+|+.+||+|+.. .|. --|||||+++... .-.++|+||.|+ ++|+++..
T Consensus 850 p~G~~GEL~i~G~~v~~GYl~~p~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l~~~GR~d~~vki~G~rI~~ 925 (3956)
T PRK12467 850 PVGVVGELYIGGAGLARGYHRRPALTAERFVPDPFGADGGRLYRTGDLARYRA----DGVIEYLGRMDHQVKIRGFRIEL 925 (3956)
T ss_pred CCCCceEEEecccccchhhcCCccccHhhCcCCCCCCCCceeEecCceeEEcC----CCcEEEeccccCeEEECCEecCH
Confidence 5899999999753 121 1399999999843 236999999998 99999999
Q ss_pred HHHHHHHHH
Q 011497 343 RDLMSAMES 351 (484)
Q Consensus 343 ~~v~~av~~ 351 (484)
.+|+.++.+
T Consensus 926 ~eIE~~L~~ 934 (3956)
T PRK12467 926 GEIEARLLA 934 (3956)
T ss_pred HHHHHHHHh
Confidence 999998875
No 31
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=98.19 E-value=6.5e-05 Score=81.51 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=90.8
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEe-ecCCCC--CCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQ--PPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i-~~~~~~--~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
+++++ +++.|+. ....+.+++.++ ++++ ..||.||+.... ...... .+....+ ..+.. .++.+..++
T Consensus 311 ~~~l~---~i~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~v~~~d~ 383 (541)
T TIGR03205 311 LSSLA---TIGSGGAPLPVEVANFFERKTG-LKLK-SGWGMTETCSPGTGHPPEGPDKPGSIGL-MLPGI-ELDVVSLDD 383 (541)
T ss_pred ccccc---eEEEccccCCHHHHHHHHHHhC-CCee-cccccccCCcccccCCCCCCCCCCCcce-eccCc-eeEEEecCC
Confidence 35565 3344442 233455566565 8888 999999974322 111110 0111112 22333 234443332
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
. ++ ++..|+.+||++++. .|.| +|++||+.++.. .-.+.|+||.++
T Consensus 384 ~------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~i~GR~~~~i~ 448 (541)
T TIGR03205 384 P------TK-----VLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDT----DGYFFLVDRKKDMII 448 (541)
T ss_pred C------Cc-----cCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEEEcC----CceEEEEccccCeEE
Confidence 1 22 345799999999874 2322 699999999843 236889999998
Q ss_pred cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEeec
Q 011497 335 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIRE 388 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~vE~~~ 388 (484)
+.|+++++.+|++++.+. . + +.+..++. ...........+++...
T Consensus 449 ~~G~~i~~~eIE~~l~~~-~------~--v~~~~v~~~~~~~~~~~~~~~v~~~~ 494 (541)
T TIGR03205 449 SGGFNVYPQMIEQAIYEH-P------G--VQEVIVIGIPDQYRGEAAKAFVKLRP 494 (541)
T ss_pred ECCEEECHHHHHHHHHhC-C------C--eeeEEEEecCCcccCceEEEEEEECC
Confidence 889999999999988753 2 2 33444433 11111234457777653
No 32
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=98.19 E-value=1.1e-05 Score=88.67 Aligned_cols=128 Identities=16% Similarity=0.236 Sum_probs=88.5
Q ss_pred EEecCchhhhHHHHHHHhC-CCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeec
Q 011497 208 CVTTGSMSQYCSKIKYYAG-EVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDF 286 (484)
Q Consensus 208 ~~~~G~~~~y~~~l~~~~g-~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l 286 (484)
-..+||+..-.+-++.+-. ++++. .+||-||..-++.+++.. .|.+ + .-+.+++-
T Consensus 357 ~~~sGGa~l~~~~~~f~~~lGi~i~-eGYGlTEts~~~~v~~~~----------------~~~~-g------tvG~p~p~ 412 (613)
T COG1022 357 YALSGGAPLSPELLHFFRSLGIPIL-EGYGLTETSAVVSVNPPD----------------RFVL-G------TVGKPLPG 412 (613)
T ss_pred EEEecCCcCCHHHHHHHHHcCCCeE-EEecccccccceEEcccc----------------Cccc-C------CcCCcCCC
Confidence 4466665444444444432 39999 999999975555444221 1111 1 12678888
Q ss_pred ccccCCceEEEEeccC---Cceee--------------eeeCCEEEEeeeeCCCcEEEEeeeCCC----cceeecCHHHH
Q 011497 287 SGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDL 345 (484)
Q Consensus 287 ~ele~G~~YeLVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~----i~gEkl~e~~v 345 (484)
.|++.+++.||.|-+. .|-|. |+|||+.+++. .=.+.++||.++ .+||++.++-+
T Consensus 413 ~evKI~d~GEilVRG~~Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~----~g~L~i~gRkK~~i~l~~GknIaP~~I 488 (613)
T COG1022 413 IEVKIADDGEILVRGPNVMKGYYKNPEATAEAFTEDGWFRTGDLGELDE----DGYLVITGRKKELIKLSNGKNIAPEPI 488 (613)
T ss_pred ceEEEccCceEEEecchhcchhcCChHHHhhhccccCCcccCceeEEcC----CCcEEEeecccceEECCCCcccChHHH
Confidence 8999999999999774 56554 99999999955 258999999998 77899999999
Q ss_pred HHHHHHHHHHhccccCceEEEEEEeec
Q 011497 346 MSAMESFQMMLRNVMAVEIVEFAGYTN 372 (484)
Q Consensus 346 ~~av~~~~~~~~~~~g~~l~~f~~~~~ 372 (484)
+..+.+- --+.+.+++.+
T Consensus 489 E~~l~~~---------~~I~qi~vvg~ 506 (613)
T COG1022 489 ESKLAKS---------PLIEQICVVGD 506 (613)
T ss_pred HHHHhcC---------CCeeEEEEEec
Confidence 8866531 13445666664
No 33
>PLN02736 long-chain acyl-CoA synthetase
Probab=98.18 E-value=6.3e-05 Score=83.94 Aligned_cols=119 Identities=15% Similarity=0.060 Sum_probs=69.9
Q ss_pred hhHHHHHHHhCCCCccccccccCceeEEeecCCC--CCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCc
Q 011497 216 QYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGK 293 (484)
Q Consensus 216 ~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~ 293 (484)
...+.+++.+| ++++ .+||.||+...+..... ..++ ......|+. -..+++.++. . ...+.+++.
T Consensus 391 ~~~~~~~~~~g-~~~~-~~YG~TE~~~~~~~~~~~~~~~~-~vG~p~pg~-~v~i~d~~~~-------~--~~~~~~~~~ 457 (651)
T PLN02736 391 DVMEFLRICFG-GRVL-EGYGMTETSCVISGMDEGDNLSG-HVGSPNPAC-EVKLVDVPEM-------N--YTSEDQPYP 457 (651)
T ss_pred HHHHHHHHHhC-CCeE-EEechHHhchheeccCCCCCCCC-ccCCccCce-EEEEEEcccc-------C--cccCCCCCC
Confidence 33445555565 7888 99999997543321111 1111 111123332 2455553321 0 011223445
Q ss_pred eEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c-ceeecCHHHHHHHHHH
Q 011497 294 MYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLMSAMES 351 (484)
Q Consensus 294 ~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i-~gEkl~e~~v~~av~~ 351 (484)
.+||.|... .|.| -|+|||+.++.. .-.+.|+||.++ + .|+++++.+|++++.+
T Consensus 458 ~GEl~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~----dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~ 532 (651)
T PLN02736 458 RGEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLP----GGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAK 532 (651)
T ss_pred CceEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcC----CCcEEEEEechhheEcCCCcEechHHHHHHHhc
Confidence 678888654 2322 489999999853 226899999998 4 4899999999988875
No 34
>PRK12316 peptide synthase; Provisional
Probab=98.15 E-value=4.3e-05 Score=102.62 Aligned_cols=130 Identities=18% Similarity=0.115 Sum_probs=78.1
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeec---CCCCCCC---CcceeccCCceEEEeeec
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINL---DIAQPPQ---TTRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~---~~~~~~~---~~~~~l~~~~~ffEFip~ 271 (484)
|.|+. ++.||- ....+++.+.++++.++ ++||.||+.+..-. .+..+.. .......++.. .-.++.
T Consensus 2261 ~~lr~---~~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~ 2335 (5163)
T PRK12316 2261 PAVRV---YCFGGEAVPAASLRLAWEALRPVYLF-NGYGPTEAVVTPLLWKCRPQDPCGAAYVPIGRALGNRR-AYILDA 2335 (5163)
T ss_pred cceeE---EEEecccCCHHHHHHHHHhCCCcEEE-ECccchhheeeeeeeecccccccCCCcCCcccccCCCE-EEEECC
Confidence 56664 455552 33344555556778888 99999998653211 1111110 00111122221 111221
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccC---Cce---------------------eeeeeCCEEEEeeeeCCCcEEE
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF---------------------YRYRLGDIVKVVDFYNSSPQVE 327 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL---------------------yRYr~GDvV~v~g~~~~~P~i~ 327 (484)
+.+. |..|+.+||.|... .|- --|||||+++... .-.+.
T Consensus 2336 --------~~~~-----vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~~~~yrTGDl~~~~~----dG~l~ 2398 (5163)
T PRK12316 2336 --------DLNL-----LAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARYRA----DGVVE 2398 (5163)
T ss_pred --------CCCC-----CCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCCCeeEecccEEEEcC----CCcEE
Confidence 1222 45899999999643 121 1399999999843 34699
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 328 FVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 328 F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
|+||.|+ |+|.++...+|+.+|.+.
T Consensus 2399 ~~GR~d~~iki~G~rie~~eIE~~l~~~ 2426 (5163)
T PRK12316 2399 YLGRIDHQVKIRGFRIELGEIEARLQAH 2426 (5163)
T ss_pred EecCCCCeEEEcCccCChHHHHHHHhhC
Confidence 9999998 999999999999988753
No 35
>PRK07514 malonyl-CoA synthase; Validated
Probab=98.14 E-value=0.00011 Score=78.48 Aligned_cols=132 Identities=16% Similarity=0.204 Sum_probs=82.8
Q ss_pred ccCCCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecC--CCCCCCCcceeccCCceEEEeeecC
Q 011497 198 KLWPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLD--IAQPPQTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 198 ~lWP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~--~~~~~~~~~~~l~~~~~ffEFip~~ 272 (484)
...++++.+ ..|+. ....+.+++.++ .+++ ..||+||+.+..... ....+. ......++ .....++++
T Consensus 266 ~~~~~lr~~---~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~-~~G~~~~~-~~v~i~d~~ 338 (504)
T PRK07514 266 EAAAHMRLF---ISGSAPLLAETHREFQERTG-HAIL-ERYGMTETNMNTSNPYDGERRAG-TVGFPLPG-VSLRVTDPE 338 (504)
T ss_pred ccccceeeE---EecCCCCCHHHHHHHHHHhC-Ccce-eecccccccccccCCccccccCc-ccccCCCC-cEEEEEECC
Confidence 345677643 44442 333355555555 6888 899999975422111 111111 12223333 345566643
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Cceee--------------eeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+ +.+ +..|+..||+|++. .|.|+ |++||+++... .-.+.|+||.++
T Consensus 339 ~-------~~~-----~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~~~ 402 (504)
T PRK07514 339 T-------GAE-----LPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKIDE----RGYVHIVGRGKDL 402 (504)
T ss_pred C-------CCC-----CCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEEcC----CccEEEeccccce
Confidence 2 222 45888999999874 44443 89999999854 236899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++++.+|++++.+.
T Consensus 403 i~~~G~~i~~~~IE~~l~~~ 422 (504)
T PRK07514 403 IISGGYNVYPKEVEGEIDEL 422 (504)
T ss_pred EEeCCeEECHHHHHHHHHhC
Confidence 889999999999998753
No 36
>PRK09088 acyl-CoA synthetase; Validated
Probab=98.10 E-value=6.7e-05 Score=80.10 Aligned_cols=128 Identities=16% Similarity=0.208 Sum_probs=79.1
Q ss_pred CCCceEEEEecCchhhhHHHHHHHh-CCCCccccccccCceeE--EeecCCC---CCCCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGSMSQYCSKIKYYA-GEVPVLGGDYFASECYV--GINLDIA---QPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~~~~y~~~l~~~~-g~v~~~~~~y~aSEg~~--~i~~~~~---~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
++++ .+.+||...-...++++. .+++++ ..||+||+.. +++..+. ..++ ......|+ ...++++.+
T Consensus 252 ~~l~---~~~~gG~~~~~~~~~~~~~~g~~v~-~~YG~TE~~~~~~~~~~~~~~~~~~~-~vG~~~~~-~~~~i~d~~-- 323 (488)
T PRK09088 252 RHLT---ALFTGGAPHAAEDILGWLDDGIPMV-DGFGMSEAGTVFGMSVDCDVIRAKAG-AAGIPTPT-VQTRVVDDQ-- 323 (488)
T ss_pred ccce---EEEecCCCCCHHHHHHHHHhCCcee-eeecccccccccccCCCcccccccCC-ccccCCCC-cEEEEECCC--
Confidence 5555 445565433333344333 258999 8999999743 3322211 0111 12223333 345565532
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+. ++..|+..||+|++. .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 324 ------~~-----~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~ 388 (488)
T PRK09088 324 ------GN-----DCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDA----DGFFWVVDRKKDMFI 388 (488)
T ss_pred ------CC-----CCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcC----CCcEEEeccccceEE
Confidence 22 245788999999874 2222 299999999853 246899999998
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
+.|+|++..+|++++.+
T Consensus 389 ~~G~~i~~~~iE~~l~~ 405 (488)
T PRK09088 389 SGGENVYPAEIEAVLAD 405 (488)
T ss_pred eCCEEECHHHHHHHHHh
Confidence 78999999999998874
No 37
>PRK06164 acyl-CoA synthetase; Validated
Probab=98.10 E-value=0.00013 Score=79.01 Aligned_cols=134 Identities=16% Similarity=0.117 Sum_probs=81.0
Q ss_pred CCCccccccccCceeEEeecCCCCCC-----CCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCceEEEEecc
Q 011497 227 EVPVLGGDYFASECYVGINLDIAQPP-----QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTT 301 (484)
Q Consensus 227 ~v~~~~~~y~aSEg~~~i~~~~~~~~-----~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt 301 (484)
+++++ ..||+||+...+........ ..+.+.+. .....+++++++ +.+ +..|+.+||+|++
T Consensus 319 ~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~i~d~~~-------~~~-----~~~g~~Gel~v~g 384 (540)
T PRK06164 319 GVPLT-GLYGSSEVQALVALQPATDPVSVRIEGGGRPAS-PEARVRARDPQD-------GAL-----LPDGESGEIEIRA 384 (540)
T ss_pred CCcee-cceeeccccceeeccCCCCCCcceeccCccccC-CCeEEEEecCCC-------CcC-----CCCCCeeEEEEec
Confidence 58888 89999997443322211100 00112222 233466666443 222 4589999999998
Q ss_pred CC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccC
Q 011497 302 YR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMA 361 (484)
Q Consensus 302 ~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g 361 (484)
.+ |. --|+|||++++.. .-.+.|+||.++ +.|++++..+|++++.+. .+
T Consensus 385 ~~~~~gY~~~~~~t~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~-------~~ 453 (540)
T PRK06164 385 PSLMRGYLDNPDATARALTDDGYFRTGDLGYTRG----DGQFVYQTRMGDSLRLGGFLVNPAEIEHALEAL-------PG 453 (540)
T ss_pred ccccccccCCchhhhhcccCCCceecCCeEEEcC----CceEEEEeecCCeEEECCEEcCHHHHHHHHHhC-------CC
Confidence 31 11 1499999988753 237889999998 889999999999998753 22
Q ss_pred ceEEEEEEeecCCCCCceEEEEEEee
Q 011497 362 VEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 362 ~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
+.+.+++.-........+.+++..
T Consensus 454 --v~~~~v~~~~~~~~~~~~~~vv~~ 477 (540)
T PRK06164 454 --VAAAQVVGATRDGKTVPVAFVIPT 477 (540)
T ss_pred --ceeEEEEecCCCCceeEEEEEEeC
Confidence 334444432111223455667664
No 38
>PLN02574 4-coumarate--CoA ligase-like
Probab=98.10 E-value=0.00012 Score=80.10 Aligned_cols=131 Identities=14% Similarity=0.129 Sum_probs=83.0
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEee--cCCCC-CCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGIN--LDIAQ-PPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~--~~~~~-~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
++.++.+ ..|+ ....++++++.+++++++ .+||+||+..... ..... ..........|+ .-.+.+++++
T Consensus 318 ~~~lr~~---~~gg~~l~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~-~~v~i~d~~~ 392 (560)
T PLN02574 318 LKSLKQV---SCGAAPLSGKFIQDFVQTLPHVDFI-QGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPN-MQAKVVDWST 392 (560)
T ss_pred cccceEE---EEecccCCHHHHHHHHHHCCCCcEE-ecccccccCceeecCCCccccCCCCceeeeCCC-cEEEEEeCCC
Confidence 4566643 3343 244456677777779999 8999999743211 11111 000122223333 3455565443
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
+.. +..|+.+||+|+... |. .-|+|||+.++.. .-.+.|+||.++
T Consensus 393 -------g~~-----~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGDlg~~~~----~G~l~i~GR~~d~i 456 (560)
T PLN02574 393 -------GCL-----LPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDE----DGYLYIVDRLKEII 456 (560)
T ss_pred -------CcC-----CCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccceEEEEEC----CCeEEEEecchhhe
Confidence 222 458999999998642 11 1389999999853 346889999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~ 351 (484)
+.|++++..+|++++.+
T Consensus 457 ~~~G~~v~~~eiE~~l~~ 474 (560)
T PLN02574 457 KYKGFQIAPADLEAVLIS 474 (560)
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 39
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.09 E-value=7.3e-05 Score=81.75 Aligned_cols=159 Identities=15% Similarity=0.142 Sum_probs=93.2
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCC--cceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT--TRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~--~~~~l~~~~~ffEFip~~~~ 274 (484)
+++++.+ ..|+ .......+++.++ ++++ ..||+||+...+-..+..+... ......|+ ...+.++.++.
T Consensus 335 ~~~lr~i---~~gg~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~~~ 408 (573)
T PRK05605 335 LSGVRNA---FSGAMALPVSTVELWEKLTG-GLLV-EGYGLTETSPIIVGNPMSDDRRPGYVGVPFPD-TEVRIVDPEDP 408 (573)
T ss_pred chhccEE---EECCCcCCHHHHHHHHHHhC-CCee-cccccchhchhhhcCCcccCCcCCccccCCCC-CEEEEEcCCCC
Confidence 4667644 4444 2344455555554 7888 8999999753221111110000 11123334 34666665431
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 335 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i 335 (484)
+.+ +..|+.+||+|++. .|.| .|++||+++... .-.+.|+||.++ +
T Consensus 409 ------~~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~i~gR~dd~i~~ 473 (573)
T PRK05605 409 ------DET-----MPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEE----DGFIRIVDRIKELIIT 473 (573)
T ss_pred ------Ccc-----CCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEEEcC----CCcEEEEeccccceee
Confidence 122 45788999999865 3333 499999998843 237899999998 8
Q ss_pred ceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee-cCCCCCceEEEEEEeec
Q 011497 336 SFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT-NLESSPKKLMIFVEIRE 388 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~-~~~~~~~~Y~l~vE~~~ 388 (484)
.|++++..+|++++.... + +.+.+++. +.........++++...
T Consensus 474 ~G~~v~p~eIE~~l~~~~-------~--i~~~~v~~~~~~~~~~~~~~~vv~~~ 518 (573)
T PRK05605 474 GGFNVYPAEVEEVLREHP-------G--VEDAAVVGLPREDGSEEVVAAVVLEP 518 (573)
T ss_pred CCEEECHHHHHHHHHhCc-------c--cceEEEEeeecccCCeEEEEEEEECC
Confidence 899999999999887531 1 33444432 11111244557787653
No 40
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=98.09 E-value=8.6e-05 Score=80.75 Aligned_cols=155 Identities=14% Similarity=0.159 Sum_probs=91.6
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE-EeecCCCCCC---CCcceeccCCceEEEeeecC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPP---QTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~~---~~~~~~l~~~~~ffEFip~~ 272 (484)
.|+++.+ .+|+ ......++++.+ +++++ +.||+||+.. +.. .+..+. ........|+. -++.++.+
T Consensus 311 ~~~l~~~---~~~G~~l~~~~~~~~~~~~-~~~~~-~~YG~TE~~~~~~~-~~~~~~~~~~~~~G~~~~~~-~v~i~d~~ 383 (547)
T PRK13295 311 VSSLRTF---LCAGAPIPGALVERARAAL-GAKIV-SAWGMTENGAVTLT-KLDDPDERASTTDGCPLPGV-EVRVVDAD 383 (547)
T ss_pred cccceEE---EEecCCCCHHHHHHHHHHh-CCCeE-EeccCCCCCCeeec-cCCCcchhccCccccccCCc-EEEEECCC
Confidence 5677644 4333 355556677667 48999 9999999743 221 111100 00111122222 24444422
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Ccee------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+. ++..|+..||+|+.. .|.| .|+|||++++.. ...+.|+||.++
T Consensus 384 --------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~~----~g~l~~~gR~~~~i~ 446 (547)
T PRK13295 384 --------GA-----PLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDA----DGYIRISGRSKDVII 446 (547)
T ss_pred --------CC-----CCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEcC----CceEEEEeccCCeEE
Confidence 22 245788999999875 3322 299999999843 347999999998
Q ss_pred cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCC-CCceEEEEEEee
Q 011497 335 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLES-SPKKLMIFVEIR 387 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~-~~~~Y~l~vE~~ 387 (484)
+.|+|+++.+|+++|.+. .+ +.+.+|+..... .....+.+++..
T Consensus 447 ~~G~~v~p~~IE~~l~~~-------~~--v~~~~v~~~~~~~~g~~~~~~v~~~ 491 (547)
T PRK13295 447 RGGENIPVVEIEALLYRH-------PA--IAQVAIVAYPDERLGERACAFVVPR 491 (547)
T ss_pred ECCEEECHHHHHHHHHhC-------CC--eeeEEEEeeecCCCCcEEEEEEEeC
Confidence 889999999999988753 22 345555432111 113445677664
No 41
>PRK07867 acyl-CoA synthetase; Validated
Probab=98.04 E-value=0.00016 Score=78.63 Aligned_cols=122 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccc----
Q 011497 214 MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGV---- 289 (484)
Q Consensus 214 ~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~el---- 289 (484)
..+-..++.+.+| ++++ ..||+||+.+.+...+..++. ......++ .+.++.+. ++.+...++
T Consensus 278 ~~~~~~~~~~~~g-~~l~-~~YG~TE~~~~~~~~~~~~~~-~~g~~~~~---~~i~~~~~-------~~~~~~g~~~~~~ 344 (529)
T PRK07867 278 APGDIARFARRFG-CVVV-DGFGSTEGGVAITRTPDTPPG-ALGPLPPG---VAIVDPDT-------GTECPPAEDADGR 344 (529)
T ss_pred ChHHHHHHHHHhC-CcEE-EeecccccccccccCCCCCCC-CcCCCCCC---EEEEECCC-------CCCCCCCcccccc
Confidence 3444456666665 8888 999999975433222211111 12222333 56665432 112211110
Q ss_pred ---cCCceEEEEe-cc---CCcee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHH
Q 011497 290 ---EIGKMYEVVV-TT---YRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLM 346 (484)
Q Consensus 290 ---e~G~~YeLVv-Tt---~~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~ 346 (484)
..|..+||++ .. ..|.| +|+|||++++.. .-.+.|+||.++ +.|+|+.+.+|+
T Consensus 345 ~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~p~eIE 420 (529)
T PRK07867 345 LLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVYWSGDLAYRDA----DGYAYFAGRLGDWMRVDGENLGTAPIE 420 (529)
T ss_pred ccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeEeeccEEEEeC----CCcEEEeccccCeEEECCEEeCHHHHH
Confidence 0112789998 33 13433 899999988843 236899999998 889999999999
Q ss_pred HHHHHH
Q 011497 347 SAMESF 352 (484)
Q Consensus 347 ~av~~~ 352 (484)
+++.+.
T Consensus 421 ~~l~~~ 426 (529)
T PRK07867 421 RILLRY 426 (529)
T ss_pred HHHHhC
Confidence 998853
No 42
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=98.03 E-value=0.00022 Score=76.14 Aligned_cols=132 Identities=12% Similarity=0.049 Sum_probs=79.8
Q ss_pred CCCCceEEEEecCc-hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC----C--cceeccCCceEEEeeecC
Q 011497 200 WPNVRYIKCVTTGS-MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ----T--TRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 200 WP~L~~i~~~~~G~-~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~----~--~~~~l~~~~~ffEFip~~ 272 (484)
.|+++.+ .+.++. .....+.+++.+++++++ ..||+||....+...+.++.. . ......++.. ...++.
T Consensus 259 ~~~l~~i-~~~G~~l~~~~~~~~~~~~~~~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~i~d~- 334 (503)
T PRK04813 259 LPNLTHF-LFCGEELPHKTAKKLLERFPSATIY-NTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSP-LLIIDE- 334 (503)
T ss_pred CCCceEE-EEecCcCCHHHHHHHHHHCCCceEE-eCcccchheeEEEEEEecccccccCCCCcccccCCCCE-EEEECC-
Confidence 4777755 222222 455667788888778888 999999964322111111000 0 0011111211 112221
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC--------------------CceeeeeeCCEEEEeeeeCCCcEEEEeeeC
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY--------------------RGFYRYRLGDIVKVVDFYNSSPQVEFVMRA 332 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~--------------------~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~ 332 (484)
++.. +..|+.+||+|+.. .|.--|++||++++ . .-.+.|.||.
T Consensus 335 -------~~~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~~tGD~~~~-~----~g~~~~~GR~ 397 (503)
T PRK04813 335 -------EGTK-----LPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAYHTGDAGYL-E----DGLLFYQGRI 397 (503)
T ss_pred -------CCCC-----CCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeEECCceEEe-e----CCeEEEeccc
Confidence 1222 44788899999873 23223999999998 2 2378999999
Q ss_pred CC---cceeecCHHHHHHHHHHH
Q 011497 333 PK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 333 ~~---i~gEkl~e~~v~~av~~~ 352 (484)
++ +.|+|++..+|++++.+.
T Consensus 398 ~d~i~~~G~~v~~~~iE~~l~~~ 420 (503)
T PRK04813 398 DFQIKLNGYRIELEEIEQNLRQS 420 (503)
T ss_pred cceEEECcEEeCHHHHHHHHHhC
Confidence 98 889999999999888753
No 43
>PRK08180 feruloyl-CoA synthase; Reviewed
Probab=98.01 E-value=0.00023 Score=78.82 Aligned_cols=44 Identities=25% Similarity=0.201 Sum_probs=29.7
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c-ceeecC--HHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIIS--ERDLMSAME 350 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i-~gEkl~--e~~v~~av~ 350 (484)
-|+|||+.++.+-....-.+.|+||.++ + .|+|+. +.+++.++.
T Consensus 441 w~~TGDlg~~~~~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~ 490 (614)
T PRK08180 441 YYRSGDAVRFVDPADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSA 490 (614)
T ss_pred ceeccceEEecCCcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhh
Confidence 3899999998531111225789999986 3 488766 677766654
No 44
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=98.00 E-value=0.0002 Score=77.80 Aligned_cols=117 Identities=18% Similarity=0.158 Sum_probs=77.2
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeE-EeecCCCC---CCCCcceeccCCceEEEeeecCCcCcccCCCceeeccccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 290 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~---~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele 290 (484)
...++.+++.+++++++ ..||+||+.. +....... ... ......|+ ...+.++.+ .. ++.
T Consensus 304 ~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i~d~~--------~~-----~~~ 367 (542)
T PRK07786 304 DTLLRQMAATFPEAQIL-AAFGQTEMSPVTCMLLGEDAIRKLG-SVGKVIPT-VAARVVDEN--------MN-----DVP 367 (542)
T ss_pred HHHHHHHHHHcCCCeEE-eeecccccccceEecCcccccccCC-CccccCCC-ceEEEECCC--------CC-----CCc
Confidence 45567888888889999 9999999742 22111110 000 11112233 345566532 12 245
Q ss_pred CCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 291 IGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 291 ~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
.|+.+||++... .|.| .|+|||+++... .-.+.|+||.++ +.|++++..+|+++|.+
T Consensus 368 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~~~~----~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~ 443 (542)
T PRK07786 368 VGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDE----EGYVWVVDRKKDMIISGGENIYCAEVENVLAS 443 (542)
T ss_pred CCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEEEcC----CceEEEEecccceEEeCCEEECHHHHHHHHHh
Confidence 788999999664 3333 399999999843 236899999998 88999999999998875
No 45
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=98.00 E-value=0.00024 Score=77.44 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=80.7
Q ss_pred CCCceEEEEecCc-hhhhHHHHHHHhCCCCccccccccCceeEEeecC-CCCCCCCcceeccCCceEEEeeecCCcCccc
Q 011497 201 PNVRYIKCVTTGS-MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLD-IAQPPQTTRFVMLPTAAYFEFLPFDMEKNEA 278 (484)
Q Consensus 201 P~L~~i~~~~~G~-~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~-~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~ 278 (484)
++++.+ .+|+ ....++.+++.++ ++++ +.||+||+...+... +...++ ......++ .-.++++.+
T Consensus 294 ~~l~~~---~~g~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~-~vG~~~~~-~~~~i~d~~------ 360 (542)
T PRK06155 294 HRVRVA---LGPGVPAALHAAFRERFG-VDLL-DGYGSTETNFVIAVTHGSQRPG-SMGRLAPG-FEARVVDEH------ 360 (542)
T ss_pred CceEEE---EEcCCCHHHHHHHHHHcC-CCEE-eeecccccCccccCCCCCCCCC-CcCccCCC-ceEEEECCC------
Confidence 455532 3444 3344456666665 8888 999999974322111 111111 11222333 335555432
Q ss_pred CCCceeecccccCCceEEEEeccCC------ce-------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cc
Q 011497 279 VGEETVDFSGVEIGKMYEVVVTTYR------GF-------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 336 (484)
Q Consensus 279 ~~~~~l~l~ele~G~~YeLVvTt~~------GL-------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~ 336 (484)
++ ++..|+.+||+|+... |. .+|+|||++++.. .-.+.|+||.++ +.
T Consensus 361 --~~-----~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~~~----dG~l~i~GR~~d~i~~~ 429 (542)
T PRK06155 361 --DQ-----ELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVRDA----DGWFRFVDRIKDAIRRR 429 (542)
T ss_pred --CC-----CCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEEcC----CceEEEEecCCCEEEeC
Confidence 22 2457899999998752 21 4799999999843 347899999998 88
Q ss_pred eeecCHHHHHHHHHHH
Q 011497 337 FEIISERDLMSAMESF 352 (484)
Q Consensus 337 gEkl~e~~v~~av~~~ 352 (484)
|+|+++.+|+++|.+.
T Consensus 430 G~~v~p~eIE~~l~~~ 445 (542)
T PRK06155 430 GENISSFEVEQVLLSH 445 (542)
T ss_pred CEEECHHHHHHHHHhC
Confidence 9999999999998753
No 46
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=97.99 E-value=8.3e-05 Score=81.04 Aligned_cols=132 Identities=16% Similarity=0.162 Sum_probs=81.7
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCC--cceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT--TRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~--~~~~l~~~~~ffEFip~~~~ 274 (484)
.|+|+.+ .+|| .....+++++.+++++++ ..||+||+...+.......+.. ......++.. ...++.++
T Consensus 298 ~~~lr~i---~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~-v~i~d~~~- 371 (539)
T PRK06334 298 LPSLRFV---VIGGDAFKDSLYQEALKTFPHIQLR-QGYGTTECSPVITINTVNSPKHESCVGMPIRGMD-VLIVSEET- 371 (539)
T ss_pred cccccEE---EECCccCCHHHHHHHHHHCCCCeEE-ecccccccCceEEeccCCCCCCCCcCceecCCCE-EEEEcCCC-
Confidence 3667643 4444 244556777778788998 9999999743221111110100 0111222322 22233221
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC---c---------------eeeeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---G---------------FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~---G---------------LyRYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
+.+ +..|+.+||+|...+ | -.-|+|||++++.. .-.+.|+||.++
T Consensus 372 ------~~~-----~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~g~~d~----~G~l~~~GR~~d~i 436 (539)
T PRK06334 372 ------KVP-----VSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDLGYVDR----HGELFLKGRLSRFV 436 (539)
T ss_pred ------Ccc-----CCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCEEEECC----CCeEEEEeccCCeE
Confidence 222 458999999996541 2 12499999998843 346889999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++++.+|+++|.+.
T Consensus 437 k~~G~~v~p~eIE~~l~~~ 455 (539)
T PRK06334 437 KIGAEMVSLEALESILMEG 455 (539)
T ss_pred EECCEEECHHHHHHHHHHc
Confidence 889999999999999864
No 47
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.98 E-value=0.00018 Score=78.59 Aligned_cols=128 Identities=15% Similarity=0.210 Sum_probs=80.2
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC--CCCCCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
.+.+++ +..|| .....+++++.++ ++++ ..||+||+...+...+. ..++ ......|+ ...+.++.+
T Consensus 325 ~~~lr~---v~~gG~~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~~-~vG~~~~~-~~v~i~d~~-- 395 (562)
T PRK05677 325 FSALKL---TLSGGMALQLATAERWKEVTG-CAIC-EGYGMTETSPVVSVNPSQAIQVG-TIGIPVPS-TLCKVIDDD-- 395 (562)
T ss_pred hhhceE---EEEcCccCCHHHHHHHHHHcC-CCee-ccCCccccCcceeecCccCCCCC-ccCccCCC-CEEEEECCC--
Confidence 356664 35554 2344455666555 8888 99999997432222211 1111 12223333 345555432
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+.. +..|+.+||+|++. .|.| -|++||+.++..- -.+.|.||.++
T Consensus 396 ------~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~~~----G~l~i~GR~~d~i~ 460 (562)
T PRK05677 396 ------GNE-----LPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQED----GYMRIVDRKKDMIL 460 (562)
T ss_pred ------CCC-----CCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEECCC----CcEEEEecCcCeEE
Confidence 222 45888999999864 1211 3899999988542 36889999998
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
+.|++++..+|++++.+
T Consensus 461 ~~G~~i~p~eiE~~l~~ 477 (562)
T PRK05677 461 VSGFNVYPNELEDVLAA 477 (562)
T ss_pred eCCEEECHHHHHHHHHh
Confidence 88999999999998875
No 48
>PRK06145 acyl-CoA synthetase; Validated
Probab=97.98 E-value=0.00025 Score=75.82 Aligned_cols=131 Identities=11% Similarity=0.065 Sum_probs=82.8
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCC---CCCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI---AQPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~---~~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
.|+++. +.+|| ....++.+++.+++++++ ..||+||+........ ............|+. -.+.++.+
T Consensus 263 ~~~l~~---~~~gG~~~~~~~~~~~~~~~~~~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~~- 336 (497)
T PRK06145 263 LDSLAW---CIGGGEKTPESRIRDFTRVFTRARYI-DAYGLTETCSGDTLMEAGREIEKIGSTGRALAHV-EIRIADGA- 336 (497)
T ss_pred cccceE---EEecCCCCCHHHHHHHHHHcCCCceE-EeecCcccCCcceeccCccccccCCCcccCCCCc-eEEEECCC-
Confidence 366663 34444 344567777778888898 8999999754221110 000000122233332 23444321
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
... +..|+..||+++.. .|.| .|+|||+++... .-.+.|+||.++
T Consensus 337 -------~~~-----~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~~~i~ 400 (497)
T PRK06145 337 -------GRW-----LPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLDE----EGFLYLTDRKKDMII 400 (497)
T ss_pred -------CCC-----CCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEEEcC----CCcEEEeccccceEE
Confidence 222 44788999999875 3333 499999998843 237899999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++.+.+|++++.+.
T Consensus 401 ~~G~~v~~~~IE~~l~~~ 418 (497)
T PRK06145 401 SGGENIASSEVERVIYEL 418 (497)
T ss_pred eCCeEECHHHHHHHHHhC
Confidence 789999999999988764
No 49
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.96 E-value=0.00045 Score=74.98 Aligned_cols=128 Identities=16% Similarity=0.139 Sum_probs=76.5
Q ss_pred ccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 289 le~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+..|+..||+++... |.| .|++||++++.. .-.+.|+||.++ +.|++++..+|+++|
T Consensus 381 ~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l 456 (545)
T PRK07768 381 LPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTE----EGEVVVCGRVKDVIIMAGRNIYPTDIERAA 456 (545)
T ss_pred CCCCCEEEEEEccCcccccccCCCCCcccccCCCeeeccceEEEec----CCEEEEEccccceEEECCEecCHHHHHHHH
Confidence 457889999997642 221 499999999843 236899999998 888999999999999
Q ss_pred HHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCcEE
Q 011497 350 ESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSV 429 (484)
Q Consensus 350 ~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v 429 (484)
.+. . .+..+.++-+. ..+.. ..-...+++|.... .+...+.++.+.+.+.+ +......|-.|
T Consensus 457 ~~~-~---~v~~~~vv~~~-~~~~~-~~~~~~~~v~~~~~-----~~~~~~~~l~~~~~~~l-------~~~~~~~p~~v 518 (545)
T PRK07768 457 ARV-E---GVRPGNAVAVR-LDAGH-SREGFAVAVESNAF-----EDPAEVRRIRHQVAHEV-------VAEVGVRPRNV 518 (545)
T ss_pred HhC-c---ccccceEEEEE-ecCCC-CceEEEEEEEeccc-----ccHHHHHHHHHHHHHHH-------HHHhCCCccEE
Confidence 864 2 21211111111 01111 12245677775432 22233334444444444 22223567778
Q ss_pred EEeCCChHH
Q 011497 430 SIVKPGTFD 438 (484)
Q Consensus 430 ~~v~~gtf~ 438 (484)
.+++.+.|+
T Consensus 519 ~~v~~~~lP 527 (545)
T PRK07768 519 VVLGPGSIP 527 (545)
T ss_pred EEeCCCcCC
Confidence 888877665
No 50
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.95 E-value=0.00032 Score=77.88 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=48.2
Q ss_pred cccCCceEEEEeccC---Cce-------------------------------eeeeeCCEEEEeeeeCCCcEEEEeeeCC
Q 011497 288 GVEIGKMYEVVVTTY---RGF-------------------------------YRYRLGDIVKVVDFYNSSPQVEFVMRAP 333 (484)
Q Consensus 288 ele~G~~YeLVvTt~---~GL-------------------------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~ 333 (484)
++..|+.+||+|... .|. --|||||+.++. .=.+.|+||.+
T Consensus 412 ~~~~ge~GEl~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-----dG~l~i~GR~~ 486 (631)
T PRK07769 412 ELPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-----DGELYITGRVK 486 (631)
T ss_pred CCCCCCEEEEEecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-----CCEEEEEcccc
Confidence 466899999999763 121 248999999873 23699999999
Q ss_pred C---cceeecCHHHHHHHHHHH
Q 011497 334 K---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 334 ~---i~gEkl~e~~v~~av~~~ 352 (484)
+ +.|+++++.+|+.+|.+.
T Consensus 487 d~Ik~~G~~V~p~eIE~~l~~~ 508 (631)
T PRK07769 487 DLVIIDGRNHYPQDLEYTAQEA 508 (631)
T ss_pred cEEEECCeeeCHHHHHHHHHhc
Confidence 8 889999999999999864
No 51
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.95 E-value=0.00031 Score=76.62 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=78.9
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecCCCC---CCCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQ---PPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~---~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
|+++ ++..|+. .....++++.+| ++++ ..||+||+...+...... .+. ......|+ .-.+.++.+
T Consensus 325 ~~lr---~~~~gg~~~~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i~~~~-- 395 (560)
T PRK08974 325 SSLK---LSVGGGMAVQQAVAERWVKLTG-QYLL-EGYGLTECSPLVSVNPYDLDYYSG-SIGLPVPS-TEIKLVDDD-- 395 (560)
T ss_pred ccee---EEEecCccCCHHHHHHHHHHhC-CcEE-eeecccccCceeeccCCCCcccCC-ccccCcCC-CEEEEECCC--
Confidence 5665 4454542 223345555554 8888 899999964332211110 011 11112223 235555432
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 335 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i 335 (484)
+. ++..|+.+||+|++. .|.| .|+|||+++... .-.+.|+||.++ +
T Consensus 396 ------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~~ 460 (560)
T PRK08974 396 ------GN-----EVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDE----EGFLRIVDRKKDMILV 460 (560)
T ss_pred ------CC-----CCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEcC----CceEEEEecccceEEe
Confidence 22 245789999999875 2322 299999999843 346899999998 7
Q ss_pred ceeecCHHHHHHHHHHH
Q 011497 336 SFEIISERDLMSAMESF 352 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~~ 352 (484)
.|+|++..+|+++|.+.
T Consensus 461 ~G~~i~~~~IE~~l~~~ 477 (560)
T PRK08974 461 SGFNVYPNEIEDVVMLH 477 (560)
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999998753
No 52
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.94 E-value=0.00041 Score=75.14 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=80.3
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeEEeecCCC-CCCCCcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~-~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
+++++.+ ..|| + ....+++.+.++ ++++ ..||.||+.......+. ...........|+. -...++.++
T Consensus 304 ~~~l~~~---~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~-~~~i~d~~~-- 375 (546)
T PRK08314 304 LSSLRYI---GGGGAAMPEAVAERLKELTG-LDYV-EGYGLTETMAQTHSNPPDRPKLQCLGIPTFGV-DARVIDPET-- 375 (546)
T ss_pred chhhhee---eeccccCCHHHHHHHHHHcC-CcEE-ecccccccccceecCCCcCCCCCccCcccCCe-EEEEEeCCC--
Confidence 4667633 4444 2 334456666665 8888 99999997543322211 00000112222332 223343322
Q ss_pred cccCCCceeecccccCCceEEEEeccC---Cce-----------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGF-----------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL-----------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
++ .++.|+..||+|... .|. --|++||++++.. .-.+.++||.++
T Consensus 376 -----~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~~d~ 441 (546)
T PRK08314 376 -----LE-----ELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDE----EGYFFITDRLKRM 441 (546)
T ss_pred -----Cc-----CCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCEEEEcC----CCcEEEEecchhh
Confidence 22 356888999999763 221 1499999988843 347899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|+++|.+.
T Consensus 442 i~~~G~~v~~~eIE~~i~~~ 461 (546)
T PRK08314 442 INASGFKVWPAEVENLLYKH 461 (546)
T ss_pred EEeCCEEECHHHHHHHHHhC
Confidence 889999999999998854
No 53
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.91 E-value=0.00058 Score=73.39 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=79.7
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE-EeecCC--CCCCCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDI--AQPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~--~~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
++++. +.+|+ ....++++++.++ ++++ ..||+||+.. +..... ...+. ......++. -++.++.+
T Consensus 271 ~~l~~---v~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~-~~~i~d~~-- 341 (509)
T PRK12406 271 SSLRH---VIHAAAPCPADVKRAMIEWWG-PVIY-EYYGSTESGAVTFATSEDALSHPG-TVGKAAPGA-ELRFVDED-- 341 (509)
T ss_pred CceeE---EEEcCCCCCHHHHHHHHHHcC-CcEE-eeccccccCceEecCcccccccCC-CcCccCCCc-EEEEECCC--
Confidence 55653 44444 3455677777776 7777 9999999743 221100 00111 112233333 24555522
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC----cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR----GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~----GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
++ .+..|+..||+++..+ |.+ -|+|||+++... .-.+.|+||.++
T Consensus 342 ------~~-----~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~d~ik 406 (509)
T PRK12406 342 ------GR-----PLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDA----DGYLFLCDRKRDMVI 406 (509)
T ss_pred ------CC-----CCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEEcC----CceEEEeecccceEE
Confidence 22 2458999999997643 332 278999988854 236789999998
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
++|++++..+|+++|.+
T Consensus 407 ~~G~~v~~~~IE~~l~~ 423 (509)
T PRK12406 407 SGGVNIYPAEIEAVLHA 423 (509)
T ss_pred ECCEEECHHHHHHHHHh
Confidence 88999999999999875
No 54
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=97.91 E-value=0.00036 Score=76.00 Aligned_cols=124 Identities=17% Similarity=0.166 Sum_probs=77.1
Q ss_pred EEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCC---CCCcceeccCCceEEEeeecCCcCcccCCC
Q 011497 208 CVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP---PQTTRFVMLPTAAYFEFLPFDMEKNEAVGE 281 (484)
Q Consensus 208 ~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~---~~~~~~~l~~~~~ffEFip~~~~~~~~~~~ 281 (484)
++..|+. ....+++++.++ ++++ ..||+||+...+....... +. ......+ ..-.+.++.+ +
T Consensus 331 ~~~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~vG~p~~-g~~v~i~d~~--------~ 398 (557)
T PRK07059 331 VANGGGMAVQRPVAERWLEMTG-CPIT-EGYGLSETSPVATCNPVDATEFSG-TIGLPLP-STEVSIRDDD--------G 398 (557)
T ss_pred EEEeccccCCHHHHHHHHHHhC-CCee-eccccccccchhhcCCCCCCCcCC-cccCccC-CcEEEEECCC--------C
Confidence 4455542 344456666665 8888 9999999754322111110 10 1111222 2234555422 2
Q ss_pred ceeecccccCCceEEEEeccCC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecC
Q 011497 282 ETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIIS 341 (484)
Q Consensus 282 ~~l~l~ele~G~~YeLVvTt~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~ 341 (484)
.+ +..|+.+||++++.. |. .-|+|||+++... .-.+.|+||.++ +.|++++
T Consensus 399 ~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~~~i~~~G~~i~ 469 (557)
T PRK07059 399 ND-----LPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVMDE----RGYTKIVDRKKDMILVSGFNVY 469 (557)
T ss_pred CC-----CCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEEcC----CCcEEEecccccceEECCEEEc
Confidence 22 457889999998732 11 1289999988743 236899999998 8899999
Q ss_pred HHHHHHHHHHH
Q 011497 342 ERDLMSAMESF 352 (484)
Q Consensus 342 e~~v~~av~~~ 352 (484)
+.++++++.+.
T Consensus 470 p~~iE~~l~~~ 480 (557)
T PRK07059 470 PNEIEEVVASH 480 (557)
T ss_pred HHHHHHHHHhC
Confidence 99999998753
No 55
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=97.90 E-value=0.00027 Score=76.69 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=78.6
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCcee-EEeecCCCCCCC---CcceeccCCceEEEeeecC
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQPPQ---TTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~-~~i~~~~~~~~~---~~~~~l~~~~~ffEFip~~ 272 (484)
.|+++.+ ..|+ + .....++.+.++ ++++ +.||+||+. ++.. .+..... .......|+. -++.++.+
T Consensus 309 ~~~l~~~---~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~-~~~~~~~~~~~~~G~~~~g~-~v~i~~~~ 381 (538)
T TIGR03208 309 VPSLFTF---LCAGAPIPGILVERAWELLG-ALIV-SAWGMTENGAVTVT-EPDDALEKASTTDGRPLPGV-EVKVIDAN 381 (538)
T ss_pred CCcceEE---EEcCCCCCHHHHHHHHHHcC-CeEE-eeeccCcCCCcccc-CcccchhhccCcccccCCCC-EEEEECCC
Confidence 3677643 4343 2 333455565565 8888 999999963 2221 1110000 0011122332 34444322
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccCC---cee------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+. .+..|+.+||+|++.. |.| .|+|||++++.. .-.+.|+||.++
T Consensus 382 --------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~gR~~~~i~ 444 (538)
T TIGR03208 382 --------GA-----KLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDA----EGYIRINGRSKDVII 444 (538)
T ss_pred --------CC-----CCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEECC----CCcEEEEeccCceEE
Confidence 22 2457899999998753 332 399999998843 237899999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|+|+.+.+|+.++.+.
T Consensus 445 ~~G~~v~p~eIE~~l~~~ 462 (538)
T TIGR03208 445 RGGENIPVVEIENLLYQH 462 (538)
T ss_pred ECCEEECHHHHHHHHhcC
Confidence 889999999999998753
No 56
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=97.90 E-value=0.00049 Score=77.00 Aligned_cols=151 Identities=17% Similarity=0.274 Sum_probs=88.2
Q ss_pred CCceEEEEeccC-----Ccee------------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHH
Q 011497 291 IGKMYEVVVTTY-----RGFY------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERD 344 (484)
Q Consensus 291 ~G~~YeLVvTt~-----~GLy------------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~ 344 (484)
.|+.+||+++.. .|.| .|++||++++.. .-.+.|+||.|+ +.|+++...+
T Consensus 461 ~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~~~tGDlg~~d~----dG~l~i~GR~dd~I~~~G~ri~p~E 536 (652)
T TIGR01217 461 TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGVWRHGDWITLTP----RGGIVIHGRSDSTLNPQGVRMGSAE 536 (652)
T ss_pred CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCEEEcCCcEEECC----CCcEEEEecccCeEecCCEEcCHHH
Confidence 488999999863 2332 178999999853 236899999998 8899999999
Q ss_pred HHHHHHHHHHHhccccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC
Q 011497 345 LMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG 422 (484)
Q Consensus 345 v~~av~~~~~~~~~~~g~~l~~f~~~~--~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g 422 (484)
|+++|.+.. + +.+-+|+. +.. ..-.-+.||.+..+ ...+.+..+++.+.+.+.|. .
T Consensus 537 IE~~l~~~p-------~--V~eaavvg~~~~~-~ge~~~afVv~~~~---~~~~~~~~~~l~~~~~~~l~---------~ 594 (652)
T TIGR01217 537 IYNAVERLD-------E--VRESLCIGQEQPD-GGYRVVLFVHLAPG---ATLDDALLDRIKRTIRAGLS---------P 594 (652)
T ss_pred HHHHHHhCC-------C--cceEEEEeeecCC-CCEEEEEEEEECCC---CCCCHHHHHHHHHHHHhhCC---------C
Confidence 999988642 2 23433332 221 12244578877543 11222222233333333331 1
Q ss_pred CCCCcEEEEeC------CCh-HHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhc
Q 011497 423 EISPLSVSIVK------PGT-FDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 423 ~l~p~~v~~v~------~gt-f~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
.-.|-.|.+|+ .|- ..+.++. +.+|. .++.+.-+.|++.++.++.
T Consensus 595 ~~~P~~i~~v~~lP~T~sGKi~r~~Lr~-~~~~~---~~~~~~~~~~~~~l~~~~~ 646 (652)
T TIGR01217 595 RHVPDEIIEVPGIPHTLTGKRVEVAVKR-VLQGT---PVDNPGAIDNPELLDLYEE 646 (652)
T ss_pred CcCCCEEEECCCCCCCCCccChHHHHHH-HHcCC---CCCCcccccCHHHHHHHHH
Confidence 23566677764 222 2222222 22343 4667788889998888754
No 57
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=97.88 E-value=0.00032 Score=76.27 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=75.2
Q ss_pred hhhHHHHHHHhCCCCccccccccCcee-EEeecC-CCCCCC----CcceeccCCceEEEeeecCCcCcccCCCceeeccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLD-IAQPPQ----TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSG 288 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~-~~i~~~-~~~~~~----~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~e 288 (484)
...+.++++.+++++++ +.||+||+. +++... +..... .......|+.. .+.++.++ ++.
T Consensus 317 ~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~-v~i~d~~~-------~~~----- 382 (546)
T PLN02330 317 PELLTAFEAKFPGVQVQ-EAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLE-VKFIDPDT-------GRS----- 382 (546)
T ss_pred HHHHHHHHHHcCCCeEE-ecccccccccceecCCCccccccccccCccccccCCcE-EEEEeCCC-------Ccc-----
Confidence 44556777778779999 999999963 333211 100000 00111222222 45555332 222
Q ss_pred ccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHH
Q 011497 289 VEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSA 348 (484)
Q Consensus 289 le~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~a 348 (484)
+..|+.+||+|+.. .|.| -|++||++++..- =.+.|.||.++ +.|++++..+|+.+
T Consensus 383 ~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~d----G~l~~~GR~~d~i~~~G~~v~~~~iE~~ 458 (546)
T PLN02330 383 LPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDIGYIDDD----GDIFIVDRIKELIKYKGFQVAPAELEAI 458 (546)
T ss_pred CCCCCceEEEEecchhhhhhccCccchhhhccCCCceecccEEEEeCC----CcEEEEechHHhhhcCCEEECHHHHHHH
Confidence 45799999999753 2221 3899999988532 25889999998 88999999999998
Q ss_pred HHHH
Q 011497 349 MESF 352 (484)
Q Consensus 349 v~~~ 352 (484)
+.+.
T Consensus 459 l~~~ 462 (546)
T PLN02330 459 LLTH 462 (546)
T ss_pred HHhC
Confidence 8753
No 58
>PRK08316 acyl-CoA synthetase; Validated
Probab=97.87 E-value=0.00031 Score=75.37 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=74.4
Q ss_pred hhhHHHHHHHhCCCCccccccccCcee-EEeecCCCCCCC--CcceeccCCceEEEeeecCCcCcccCCCceeecccccC
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQPPQ--TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 291 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~-~~i~~~~~~~~~--~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~ 291 (484)
....+.+++.+++++++ ..||+||+. ++....+..... .......++. ....++.+ +.. +..
T Consensus 300 ~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~~--------~~~-----~~~ 364 (523)
T PRK08316 300 VEVLKELRERLPGLRFY-NCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNV-ETRVVDDD--------GND-----VAP 364 (523)
T ss_pred HHHHHHHHHHcCCCcee-eeecccccCccccccCccccccccCCcccCCCCc-EEEEEcCC--------CCC-----CCC
Confidence 44557788888789999 999999963 222111110000 0001111221 22233321 222 346
Q ss_pred CceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 292 GKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 292 G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
|+.+||++++.+ |.| .|+|||+++... ...+.|+||.++ +.|+|++..+|++++.+.
T Consensus 365 g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~ 440 (523)
T PRK08316 365 GEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDE----EGYITVVDRKKDMIKTGGENVASREVEEALYTH 440 (523)
T ss_pred CCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEEEcC----CceEEEecccccEEEeCCeEECHHHHHHHHHhC
Confidence 889999998753 222 399999998843 347899999998 889999999999988753
No 59
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=97.87 E-value=0.00078 Score=72.37 Aligned_cols=117 Identities=15% Similarity=0.088 Sum_probs=72.9
Q ss_pred hhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCc-ceeccCCceEEEeeecCCcCcccCCCceeecccccCCce
Q 011497 216 QYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTT-RFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKM 294 (484)
Q Consensus 216 ~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~-~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~~ 294 (484)
...+.+++.++ ++++ ..||+||...........+...+ .....++ .-++.++ ++ +.+ +..|+.
T Consensus 293 ~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g-~~v~i~d-~~-------~~~-----~~~g~~ 356 (508)
T TIGR02262 293 EVGQRWQARFG-VDIV-DGIGSTEMLHIFLSNLPGDVRYGTSGKPVPG-YRLRLVG-DG-------GQD-----VAAGEP 356 (508)
T ss_pred HHHHHHHHHhC-Cchh-hCccccccCceeecCCccCCCCCCcCCCCCC-cEEEEEC-CC-------CCC-----CCCCCe
Confidence 33456666665 7888 99999996421111111100000 1112222 2355565 22 233 347899
Q ss_pred EEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 295 YEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 295 YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+||+++... |.| .|+|||+.+... .-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 357 Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~ 429 (508)
T TIGR02262 357 GELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRND----DGSYTYAGRTDDMLKVSGIYVSPFEIESALIQH 429 (508)
T ss_pred eEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcC----CccEEEeccccceeeeCCEEECHHHHHHHHHhC
Confidence 999998753 221 479999887732 236899999998 889999999999988753
No 60
>PRK13382 acyl-CoA synthetase; Provisional
Probab=97.87 E-value=0.00042 Score=75.36 Aligned_cols=129 Identities=15% Similarity=0.052 Sum_probs=81.1
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC---CCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA---QPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~---~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
+++++.| ..|| ....+.++++.+| .+++ .+||+||+....-..+. ..+. ......++ .-++.++.+
T Consensus 311 ~~~lr~i---~~gG~~l~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~-~vG~p~~~-~~~~i~d~~- 382 (537)
T PRK13382 311 GRSLRFA---AASGSRMRPDVVIAFMDQFG-DVIY-NNYNATEAGMIATATPADLRAAPD-TAGRPAEG-TEIRILDQD- 382 (537)
T ss_pred ccceeEE---EEcCCCCCHHHHHHHHHHcC-CcEE-ecccccccCcceecChhHhccCCC-CccccCcC-cEEEEECCC-
Confidence 4566644 4444 3455667777777 5777 99999997542211110 0000 11112223 234555532
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCCc-------------eeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cce
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYRG-------------FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 337 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~G-------------LyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~g 337 (484)
.+ .+..|+..||+|++.+- -..|+|||+++...- -.+.|+||.++ +.|
T Consensus 383 -------~~-----~~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~g~~~TGDl~~~~~~----g~l~~~GR~dd~ik~~G 446 (537)
T PRK13382 383 -------FR-----EVPTGEVGTIFVRNDTQFDGYTSGSTKDFHDGFMASGDVGYLDEN----GRLFVVGRDDEMIVSGG 446 (537)
T ss_pred -------CC-----CCCCCCeeEEEEEcCCcccCccccchhhccCCCEeeCceEEEeCC----CcEEEeccccceeEECC
Confidence 22 24578999999987521 136899999988542 35889999998 889
Q ss_pred eecCHHHHHHHHHHH
Q 011497 338 EIISERDLMSAMESF 352 (484)
Q Consensus 338 Ekl~e~~v~~av~~~ 352 (484)
++++..+|+.++.+.
T Consensus 447 ~~v~~~eIE~~l~~~ 461 (537)
T PRK13382 447 ENVYPIEVEKTLATH 461 (537)
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999988753
No 61
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=97.86 E-value=0.00014 Score=75.30 Aligned_cols=131 Identities=18% Similarity=0.209 Sum_probs=81.5
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEe---ecCCCCCCCC---cceeccCCceEEEeeec
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQPPQT---TRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i---~~~~~~~~~~---~~~~l~~~~~ffEFip~ 271 (484)
.++++.+ +.+|. .....+.+++.+++++++ ..||+||+...+ +......... ..-...++. ....++.
T Consensus 233 ~~~l~~v--~~~g~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~~~ 308 (408)
T TIGR01733 233 LASLRLV--ILGGEALTPALVDRWRARGPGARLI-NLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANT-RLYVLDD 308 (408)
T ss_pred ccCceEE--EEeCccCCHHHHHHHHHhCCCcEEE-ecccCCceEEEEEEEEcCccccCCccccccCcccCCc-eEEEECC
Confidence 4677755 22332 455667788888878898 999999974422 1111111000 000112222 1223322
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccCC---cee----------------------eeeeCCEEEEeeeeCCCcEE
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY----------------------RYRLGDIVKVVDFYNSSPQV 326 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy----------------------RYr~GDvV~v~g~~~~~P~i 326 (484)
+ .+ .+..|+.+||+|+..+ |.| .|+|||+..+.. .-.+
T Consensus 309 ~--------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~TGDl~~~d~----~g~~ 371 (408)
T TIGR01733 309 D--------LR-----PVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLP----DGNL 371 (408)
T ss_pred C--------CC-----CCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCCCceEEECCceEEEcC----CCCE
Confidence 1 22 2458899999998742 122 699999998853 2369
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 327 EFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 327 ~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
.|+||.++ +.|+|+++.+|++++..
T Consensus 372 ~~~gR~~~~i~~~G~~v~~~~ie~~l~~ 399 (408)
T TIGR01733 372 EFLGRIDDQVKIRGYRIELGEIEAALLR 399 (408)
T ss_pred EEeeccCCEEEeCeEEechHHHHHHHhc
Confidence 99999998 88999999999998874
No 62
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.86 E-value=0.00052 Score=73.43 Aligned_cols=118 Identities=16% Similarity=0.075 Sum_probs=74.0
Q ss_pred hhhHHHHHHHhCCCCccccccccCcee-E-EeecCCCCCC--CCcceeccCCceEEEeeecCCcCcccCCCceeeccccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECY-V-GINLDIAQPP--QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 290 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~-~-~i~~~~~~~~--~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele 290 (484)
...+.++++.++..+++ ..||+||+. + ..+....... ........++ .-++.++.+ +. .+.
T Consensus 295 ~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~-~~~~i~d~~--------~~-----~~~ 359 (513)
T PRK07656 295 VALLERFESELGVDIVL-TGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAG-VENKIVNEL--------GE-----EVP 359 (513)
T ss_pred HHHHHHHHHHcCCCceE-eEEccccCCCceeecCccccccccCCCccccCCC-cEEEEECCC--------CC-----CCC
Confidence 44456667667633777 999999973 2 2211100000 0011222333 234555422 22 246
Q ss_pred CCceEEEEeccCC---ce----------ee----eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHH
Q 011497 291 IGKMYEVVVTTYR---GF----------YR----YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 350 (484)
Q Consensus 291 ~G~~YeLVvTt~~---GL----------yR----Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~ 350 (484)
.|+..||+|++.. |. ++ |++||+.+... .-.+.++||.++ +.|++++..+|+++|.
T Consensus 360 ~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~ 435 (513)
T PRK07656 360 VGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDE----EGYLYIVDRKKDMFIVGGFNVYPAEVEEVLY 435 (513)
T ss_pred CCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccceEEEcC----CeeEEEEecccceEEeCCEEeCHHHHHHHHH
Confidence 8999999998763 11 22 89999998843 347899999998 8899999999999887
Q ss_pred H
Q 011497 351 S 351 (484)
Q Consensus 351 ~ 351 (484)
+
T Consensus 436 ~ 436 (513)
T PRK07656 436 E 436 (513)
T ss_pred h
Confidence 4
No 63
>PRK12583 acyl-CoA synthetase; Provisional
Probab=97.85 E-value=0.00069 Score=73.50 Aligned_cols=158 Identities=16% Similarity=0.135 Sum_probs=92.8
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC----CcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ----TTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~----~~~~~l~~~~~ffEFip~~~ 273 (484)
+++++.| +.+|. .....+++.+.++..++. ..||+||+....-....++.. .......|+ ..++.++.+
T Consensus 316 ~~~lr~i--~~~G~~~~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~-~~~~i~d~~- 390 (558)
T PRK12583 316 LSSLRTG--IMAGAPCPIEVMRRVMDEMHMAEVQ-IAYGMTETSPVSLQTTAADDLERRVETVGRTQPH-LEVKVVDPD- 390 (558)
T ss_pred chhheEE--EecCCCCCHHHHHHHHHHcCCccee-ccccccccccceeccCcccccccccCCCCccCCC-CeEEEECCC-
Confidence 4677744 33343 344456677777766777 899999974322111110000 001112233 345555533
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCC---cee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
+ .++..|+.+||+|++.+ |.| .|++||++++.. .-.+.|.||.++
T Consensus 391 -------~-----~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~~~----dg~l~i~GR~~~~i 454 (558)
T PRK12583 391 -------G-----ATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDE----QGYVRIVGRSKDMI 454 (558)
T ss_pred -------C-----CCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccceEEECC----CccEEEEeccccee
Confidence 1 13568999999997752 221 389999999843 237899999998
Q ss_pred -cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeec-CCCCCceEEEEEEee
Q 011497 335 -SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTN-LESSPKKLMIFVEIR 387 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~-~~~~~~~Y~l~vE~~ 387 (484)
+.|+|++..+|++++.+. .+ +.+.+++.. ........+.+++..
T Consensus 455 ~~~G~~v~~~~IE~~l~~~-------~~--v~~~~v~~~~~~~~~~~~~~~v~~~ 500 (558)
T PRK12583 455 IRGGENIYPREIEEFLFTH-------PA--VADVQVFGVPDEKYGEEIVAWVRLH 500 (558)
T ss_pred EECCEEeCHHHHHHHHHhC-------CC--eeEEEEEeeecCCCCcEEEEEEEEC
Confidence 789999999999988742 22 345554431 111123445777764
No 64
>PRK05850 acyl-CoA synthetase; Validated
Probab=97.85 E-value=0.00055 Score=74.92 Aligned_cols=126 Identities=16% Similarity=0.231 Sum_probs=75.4
Q ss_pred cccCCceEEEEeccCC---cee-------------------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cc
Q 011497 288 GVEIGKMYEVVVTTYR---GFY-------------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 336 (484)
Q Consensus 288 ele~G~~YeLVvTt~~---GLy-------------------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~ 336 (484)
++..|+.+||.|...+ |.| -|+|||+..+.. =.+.|+||.++ +.
T Consensus 391 ~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~~-----G~l~~~GR~~d~i~~~ 465 (578)
T PRK05850 391 ECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFISE-----GELFIVGRIKDLLIVD 465 (578)
T ss_pred CCCCCCEEEEEEecCcccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEEC-----CEEEEEcccccEEEEC
Confidence 3568999999997752 222 599999987631 26899999998 88
Q ss_pred eeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHH---HHHHHHHHHHHHhCh
Q 011497 337 FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVA---ILRRCCSSLEDAFGS 413 (484)
Q Consensus 337 gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~---~l~~~~~~ld~~Ln~ 413 (484)
|++++..+|+.+|.+.. +....-+. +++.. ....+.+++++... ..+.+ .+..+.+.+...+
T Consensus 466 G~~i~p~eIE~~l~~~~-------~~~~~v~~-v~~~~--~~~~~a~v~~~~~~---~~~~~~~~~~~~l~~~v~~~l-- 530 (578)
T PRK05850 466 GRNHYPDDIEATIQEIT-------GGRVAAIS-VPDDG--TEKLVAIIELKKRG---DSDEEAMDRLRTVKREVTSAI-- 530 (578)
T ss_pred CeecCHHHHHHHHHHhc-------CCcEEEEE-ecCCC--ceEEEEEEEecccc---CcchhhhhhHHHHHHHHHHHH--
Confidence 99999999999988642 22222121 23322 23345677765321 11111 2233434333333
Q ss_pred hHHHhhhcCCCCCcEEEEeCCChHH
Q 011497 414 IYKVQRDRGEISPLSVSIVKPGTFD 438 (484)
Q Consensus 414 ~Y~~~R~~g~l~p~~v~~v~~gtf~ 438 (484)
.. ...+.|..+.+|+.++|+
T Consensus 531 --~~---~~~~~~~~~~~~~~~~iP 550 (578)
T PRK05850 531 --SK---SHGLSVADLVLVAPGSIP 550 (578)
T ss_pred --HH---HhCCCceEEEEeCCCCcC
Confidence 21 123567778888876665
No 65
>PRK05852 acyl-CoA synthetase; Validated
Probab=97.84 E-value=0.00057 Score=74.06 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=81.2
Q ss_pred cCCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCceeEEeecCC-------CCCCCCcceeccCCceEEEeeec
Q 011497 199 LWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI-------AQPPQTTRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 199 lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~-------~~~~~~~~~~l~~~~~ffEFip~ 271 (484)
-+|.+++|.+.........++.+++.++ ++++ .+||.||+...+...+ ..+.......-.......+.++.
T Consensus 293 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~ 370 (534)
T PRK05852 293 KPAALRFIRSCSAPLTAETAQALQTEFA-APVV-CAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGS 370 (534)
T ss_pred cCCCeeEEEECCCCCCHHHHHHHHHHhC-CChh-hccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECC
Confidence 4577775533211113445566777776 8888 8999999643221110 00000011110012334555553
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+ ++ ++.+|+..||+|+... |.| .|+|||+.+... .-.+.|+||.++
T Consensus 371 ~--------g~-----~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TGD~~~~d~----dG~l~~~gR~~d~ 433 (534)
T PRK05852 371 D--------GL-----PLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSA----AGDLSIRGRIKEL 433 (534)
T ss_pred C--------CC-----CCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccCceEEEeC----CCcEEEEecchhh
Confidence 2 22 2458999999998753 222 389999998853 226899999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~ 351 (484)
+.|++++..++++++.+
T Consensus 434 i~~~G~~v~~~~iE~~l~~ 452 (534)
T PRK05852 434 INRGGEKISPERVEGVLAS 452 (534)
T ss_pred EEECCEEECHHHHHHHHHh
Confidence 77999999999998875
No 66
>PRK08315 AMP-binding domain protein; Validated
Probab=97.83 E-value=0.00069 Score=73.60 Aligned_cols=133 Identities=20% Similarity=0.114 Sum_probs=80.5
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC----CCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP----QTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~----~~~~~~l~~~~~ffEFip~~~ 273 (484)
.|+++.+ +.+|+ ....+.++++.++..+++ ..||.||+...........+ ........|+ .-++.++.++
T Consensus 314 ~~~lr~~--~~~G~~~~~~~~~~~~~~~~~~~l~-~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~-~~v~i~d~~~ 389 (559)
T PRK08315 314 LSSLRTG--IMAGSPCPIEVMKRVIDKMHMSEVT-IAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPH-LEVKIVDPET 389 (559)
T ss_pred chhhhee--EecCCCCCHHHHHHHHHHcCCccee-EEEcccccccceeecCcccchhhccCCCCccCCC-cEEEEEcCcc
Confidence 3666643 22332 234456667777766688 89999997532211110000 0011122333 3355555432
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCC---c--------------eeeeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---G--------------FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---G--------------LyRYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
++. +..|+.+||+|...+ | .-.|++||+++... .=.+.|+||.++
T Consensus 390 -------~~~-----~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~d~~i 453 (559)
T PRK08315 390 -------GET-----VPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDE----EGYVNIVGRIKDMI 453 (559)
T ss_pred -------CCc-----CCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccceEEEcC----CceEEEEeeccceE
Confidence 222 447889999997642 1 12599999998742 236899999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|++++.+.
T Consensus 454 ~~~G~~v~~~eIE~~l~~~ 472 (559)
T PRK08315 454 IRGGENIYPREIEEFLYTH 472 (559)
T ss_pred EECCEEEcHHHHHHHHHhC
Confidence 889999999999988753
No 67
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=97.81 E-value=0.00068 Score=75.05 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=75.5
Q ss_pred cccCCceEEEEeccC---Ccee--------------------------------eeeeCCEEEEeeeeCCCcEEEEeeeC
Q 011497 288 GVEIGKMYEVVVTTY---RGFY--------------------------------RYRLGDIVKVVDFYNSSPQVEFVMRA 332 (484)
Q Consensus 288 ele~G~~YeLVvTt~---~GLy--------------------------------RYr~GDvV~v~g~~~~~P~i~F~gR~ 332 (484)
++.+|+.+||.|... .|.| -|+|||+.++. .-.+.|+||.
T Consensus 423 ~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~~-----dG~l~i~GR~ 497 (612)
T PRK12476 423 ELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVYL-----DGELYITGRI 497 (612)
T ss_pred CCCCCCEEEEEEcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeeccccceeE-----CCEEEEEecc
Confidence 356899999999763 2222 58999999762 2259999999
Q ss_pred CC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHH
Q 011497 333 PK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLED 409 (484)
Q Consensus 333 ~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~ 409 (484)
++ +.|++++..+|+++|.+..+ .+..+.+.-+. +++.. ..+-+++++...+ ......+++.+.+.+
T Consensus 498 ~d~I~~~G~~I~p~eIE~~l~~~~p---~V~~~~v~v~~-~~~~~--~~~~~~~v~~~~~-----~~~~~~~~l~~~~~~ 566 (612)
T PRK12476 498 ADLIVIDGRNHYPQDIEATVAEASP---MVRRGYVTAFT-VPAED--NERLVIVAERAAG-----TSRADPAPAIDAIRA 566 (612)
T ss_pred CcEEEECCcccCHHHHHHHHHHhcc---cccCCcEEEEE-ecCCC--cceEEEEEEecCC-----cccccHHHHHHHHHH
Confidence 99 88999999999999986533 21111121122 22322 2345678887532 001112233444444
Q ss_pred HhChhHHHhhhcCCCCCcEEEEeCCChHH
Q 011497 410 AFGSIYKVQRDRGEISPLSVSIVKPGTFD 438 (484)
Q Consensus 410 ~Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~ 438 (484)
.|... ..+.|-.+.+|+.+.|+
T Consensus 567 ~l~~~-------~~~~p~~v~~v~~~~lP 588 (612)
T PRK12476 567 AVSRR-------HGLAVADVRLVPAGAIP 588 (612)
T ss_pred HHHHh-------hCCcceEEEEECCCCcC
Confidence 44211 12445567777765555
No 68
>PRK13390 acyl-CoA synthetase; Provisional
Probab=97.79 E-value=0.0011 Score=71.12 Aligned_cols=126 Identities=14% Similarity=0.058 Sum_probs=76.2
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeE-EeecCCCC--CCCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ--PPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~--~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
++++.+ .+|+. ....+.+++.++ .+++ ..||.||+.. .....+.. .++ ......++ . .+.++.+
T Consensus 270 ~~l~~v---~~~g~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~g-~-~~i~d~~-- 339 (501)
T PRK13390 270 SSLRAV---IHAAAPCPVDVKHAMIDWLG-PIVY-EYYSSTEAHGMTFIDSPDWLAHPG-SVGRSVLG-D-LHICDDD-- 339 (501)
T ss_pred hhhheE---EEcCCCCCHHHHHHHHHhcC-Ccee-eeecccccCceEEecchhhccCCC-CcCCcccc-e-EEEECCC--
Confidence 456543 44442 333455666565 7788 8999999742 22111110 010 01111222 2 3334321
Q ss_pred CcccCCCceeecccccCCceEEEEeccCCceee-------------------eeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYR-------------------YRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyR-------------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+++ +..|+.+||+|.+.+-..+ |++||++++.. .=.+.|+||.++
T Consensus 340 ------~~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~~~~----dg~l~~~gR~~~~ 404 (501)
T PRK13390 340 ------GNE-----LPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGSVDE----DGYLYLADRKSFM 404 (501)
T ss_pred ------CCC-----CCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEEECC----CCeEEEeeccccc
Confidence 232 4589999999987543322 48999999844 236899999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~ 351 (484)
+.|+++++.+|+++|.+
T Consensus 405 i~~~G~~v~p~eIE~~l~~ 423 (501)
T PRK13390 405 IISGGVNIYPQETENALTM 423 (501)
T ss_pred eeECCeeeCHHHHHHHHHh
Confidence 88999999999999864
No 69
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.78 E-value=0.00047 Score=75.22 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=80.1
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE-Eeec--CCCCCCCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINL--DIAQPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~--~~~~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
+.+++| .+|+ ......++++.++ ++++ ..||+||+.. +... .....++ ......++.. .+.++.++
T Consensus 323 ~~lr~v---~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~-~~G~~~~~~~-~~i~~~~~- 394 (563)
T PRK06710 323 SSIRAC---ISGSAPLPVEVQEKFETVTG-GKLV-EGYGLTESSPVTHSNFLWEKRVPG-SIGVPWPDTE-AMIMSLET- 394 (563)
T ss_pred hhhhhe---eeCCCcCCHHHHHHHHHhhC-CCEe-cccccccCccccccCcccccccCC-ccCCCCCCCe-EEEEECCC-
Confidence 566643 4443 2344456666665 7888 8999999743 2110 0000011 1122334433 45555432
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC---ceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---c
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S 335 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i 335 (484)
++. +..|+.+||+++... |.|. |+|||++.... .-.+.|+||.++ +
T Consensus 395 ------~~~-----~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~~~~~GR~dd~i~~ 459 (563)
T PRK06710 395 ------GEA-----LPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDE----DGFFYVKDRKKDMIVA 459 (563)
T ss_pred ------Ccc-----CCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEEcC----CCcEEEeeccccEEEE
Confidence 222 457889999998752 3322 99999987743 347899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 011497 336 SFEIISERDLMSAMESF 352 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~~ 352 (484)
.|+|+++.+|++++.+.
T Consensus 460 ~G~~v~p~eiE~~l~~~ 476 (563)
T PRK06710 460 SGFNVYPREVEEVLYEH 476 (563)
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999999754
No 70
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=97.74 E-value=0.00079 Score=72.84 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=77.4
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCC---CCCcceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP---PQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~---~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
++++ ++..|+ ......++++.++ ++++ .+||.||+.+....-.... .....+.+ +.....+.++.+
T Consensus 299 ~~lr---~~~~gG~~l~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~v~i~d~~-- 370 (527)
T TIGR02275 299 SSLK---LLQVGGAKFSEAAARRVPAVFG-CQLQ-QVFGMAEGLVNYTRLDDPAEIIFTTQGRPM-SPDDEVRVVDDH-- 370 (527)
T ss_pred cceE---EEEEcCCCCCHHHHHHHHHHhC-CeEE-eeeccCccCccccCCCCccccccccCCCCC-CCCceEEEECCC--
Confidence 4555 445554 2334456666665 8888 9999999754321110000 00011111 111223333321
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+++ +..|+..||+++.. .|.| -|+|||+.++.. ...+.|+||.++
T Consensus 371 ------g~~-----~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~~~~----~g~l~~~gR~~d~i~ 435 (527)
T TIGR02275 371 ------GNP-----VAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVRLTP----EGYIVVVGRAKDQIN 435 (527)
T ss_pred ------CCC-----CCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEEEcC----CccEEEEecccceee
Confidence 222 45799999999753 2221 299999999843 346889999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++.+.+|+++|.+.
T Consensus 436 ~~G~~v~~~eiE~~l~~~ 453 (527)
T TIGR02275 436 RGGEKIAAEEIENLLLAH 453 (527)
T ss_pred cCCEEECHHHHHHHHHhC
Confidence 889999999999988753
No 71
>PLN02246 4-coumarate--CoA ligase
Probab=97.74 E-value=0.00088 Score=72.62 Aligned_cols=129 Identities=14% Similarity=0.103 Sum_probs=79.1
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEE--eecCCC-----CCCCCcceeccCCceEEEeee
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVG--INLDIA-----QPPQTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~--i~~~~~-----~~~~~~~~~l~~~~~ffEFip 270 (484)
+.++. +..|+. ....+.+++.++++++. ..||+||+... .+.... ..+. ......++ .-.+.++
T Consensus 298 ~~lr~---~~~gg~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~-~~~~i~d 371 (537)
T PLN02246 298 SSIRM---VLSGAAPLGKELEDAFRAKLPNAVLG-QGYGMTEAGPVLAMCLAFAKEPFPVKSG-SCGTVVRN-AELKIVD 371 (537)
T ss_pred cceeE---EEEecCcCCHHHHHHHHHHcCCCeEe-ccccccccCcccccccccCCCCccccCC-ccccccCC-cEEEEec
Confidence 55653 344442 44456777778778888 89999997432 111100 0010 11111222 2234444
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC---Cce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCC
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAP 333 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~ 333 (484)
+++ .. .+..|+..||+|+.. .|. ..|++||+.++.. .-.+.|+||.+
T Consensus 372 ~~~-------~~-----~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~d 435 (537)
T PLN02246 372 PET-------GA-----SLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHTGDIGYIDD----DDELFIVDRLK 435 (537)
T ss_pred CCC-------CC-----cCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeeecceEEEeC----CCeEEEEeccc
Confidence 322 22 245899999999863 221 1478999998853 22688999999
Q ss_pred C---cceeecCHHHHHHHHHH
Q 011497 334 K---SSFEIISERDLMSAMES 351 (484)
Q Consensus 334 ~---i~gEkl~e~~v~~av~~ 351 (484)
+ +.|++++..+|++++.+
T Consensus 436 d~i~~~G~~i~~~eIE~~l~~ 456 (537)
T PLN02246 436 ELIKYKGFQVAPAELEALLIS 456 (537)
T ss_pred ceEEECCEEECcHHHHHHHHh
Confidence 8 88999999999988875
No 72
>PLN03051 acyl-activating enzyme; Provisional
Probab=97.73 E-value=0.0018 Score=69.78 Aligned_cols=41 Identities=22% Similarity=0.066 Sum_probs=35.3
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
.|+|||++++.. .-.+.|+||.++ +.|+++++.+|+++|.+
T Consensus 358 ~~~TGDlg~~d~----dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~ 401 (499)
T PLN03051 358 LRRHGDIMKRTP----GGYFCVQGRADDTMNLGGIKTSSVEIERACDR 401 (499)
T ss_pred eeecCCeEEECC----CCcEEEEeccCCEEeeCCEECCHHHHHHHHHh
Confidence 489999998842 236899999998 88999999999999985
No 73
>PRK06839 acyl-CoA synthetase; Validated
Probab=97.73 E-value=0.00088 Score=71.40 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=77.7
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE-EeecCCCCCCC-C-cceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPPQ-T-TRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~~~-~-~~~~l~~~~~ffEFip~~~ 273 (484)
.+.++++ ..|+ .....+.+++. ++++. ..||+||+.. ........... . ......++. -++.++.+.
T Consensus 263 ~~~lr~~---~~gG~~~~~~~~~~~~~~--g~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d~~~ 335 (496)
T PRK06839 263 LQSVRWF---YNGGAPCPEELMREFIDR--GFLFG-QGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFC-DYELIDENK 335 (496)
T ss_pred CcccceE---EECCCCCCHHHHHHHHHh--CCeeE-eeccCCCCCcceEecccccccccCCCCcccCCCc-eEEEECCCc
Confidence 3556533 4444 24445555554 48888 9999999743 22111111000 0 011112222 244454331
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
. ++..|+.+||+|++.. |.| .|++||+++... .-.+.|+||.++
T Consensus 336 --------~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~ 398 (496)
T PRK06839 336 --------N-----KVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDE----DGFVYIVGRKKEMII 398 (496)
T ss_pred --------C-----CCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEcC----CCcEEEeccccceEE
Confidence 1 1558999999998764 211 289999999843 346789999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|+|+.+.++++++.+.
T Consensus 399 ~~G~~v~p~~iE~~l~~~ 416 (496)
T PRK06839 399 SGGENIYPLEVEQVINKL 416 (496)
T ss_pred ECCEEECHHHHHHHHHhC
Confidence 779999999999988753
No 74
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=97.72 E-value=0.0016 Score=69.81 Aligned_cols=119 Identities=17% Similarity=0.123 Sum_probs=73.7
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC--CCcceeccCCceEEEeeecCCcCcccCCCceeecccccCC
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP--QTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIG 292 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~--~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G 292 (484)
......+++.+++++++ ..||.||+.......+.... ........|+. ....++.+ +.. +..|
T Consensus 288 ~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~~~~--------~~~-----~~~~ 352 (515)
T TIGR03098 288 RATLSRLRSFLPNARLF-LMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNA-EVLVLRED--------GSE-----CAPG 352 (515)
T ss_pred HHHHHHHHHHCCCCeEe-eeeccccccceEecccccccCCCCCcceecCCC-EEEEECCC--------CCC-----CCCC
Confidence 45556777778778888 99999997532222211100 00111222222 33444422 222 3467
Q ss_pred ceEEEEeccC---Ccee-------------------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecC
Q 011497 293 KMYEVVVTTY---RGFY-------------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIIS 341 (484)
Q Consensus 293 ~~YeLVvTt~---~GLy-------------------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~ 341 (484)
+.+||++.+. .|.| .|++||++++.. .=.+.|.||.++ +.|++++
T Consensus 353 ~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~d~i~~~G~~v~ 428 (515)
T TIGR03098 353 EEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLPELAVWSGDTVRRDE----EGFLYFVGRRDEMIKTSGYRVS 428 (515)
T ss_pred CceEEEEcCchhhccccCCchhhhhhhhccCCccccccccccceeccceEEEcC----CceEEEEeccccceecCCEEeC
Confidence 8889988664 2221 478999988732 226889999998 7799999
Q ss_pred HHHHHHHHHHH
Q 011497 342 ERDLMSAMESF 352 (484)
Q Consensus 342 e~~v~~av~~~ 352 (484)
..+|++++.+.
T Consensus 429 ~~eiE~~l~~~ 439 (515)
T TIGR03098 429 PTEVEEVAYAT 439 (515)
T ss_pred HHHHHHHHhcC
Confidence 99999888743
No 75
>PRK13383 acyl-CoA synthetase; Provisional
Probab=97.72 E-value=0.00098 Score=71.91 Aligned_cols=129 Identities=16% Similarity=0.051 Sum_probs=79.1
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC--CCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP--QTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~--~~~~~~l~~~~~ffEFip~~~~ 274 (484)
.|.++. +.+|| ....+.++++.+| .+++ ..||.||+....-..+.... ........|+ .-+++++.+
T Consensus 291 ~~~lr~---i~~gG~~l~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~-- 362 (516)
T PRK13383 291 LPQLRV---VMSSGDRLDPTLGQRFMDTYG-DILY-NGYGSTEVGIGALATPADLRDAPETVGKPVAG-CPVRILDRN-- 362 (516)
T ss_pred CCceEE---EEECCCCCCHHHHHHHHHHcC-chhh-hcccccccccceeccccccccCCCcccCCCCC-cEEEEECCC--
Confidence 466663 34444 2344566677676 7788 99999997432211111000 0011112222 235555432
Q ss_pred CcccCCCceeecccccCCceEEEEeccCCcee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---ccee
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYRGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFE 338 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gE 338 (484)
+++ +..|+.+||++++..-.. .|+|||+.+... .-.+.|+||.++ +.|+
T Consensus 363 ------~~~-----~~~g~~Gel~v~g~~~~~~Y~~~~~~~~~~g~~~TGDl~~~d~----~G~l~i~GR~~~~i~~~G~ 427 (516)
T PRK13383 363 ------NRP-----VGPRVTGRIFVGGELAGTRYTDGGGKAVVDGMTSTGDMGYLDN----AGRLFIVGREDDMIISGGE 427 (516)
T ss_pred ------CCC-----CCCCCceEEEEecCcccccccCCchhheecCceecceeEEEcC----CccEEEeccccceEEECCE
Confidence 222 447889999998654333 356999988843 236789999998 8899
Q ss_pred ecCHHHHHHHHHH
Q 011497 339 IISERDLMSAMES 351 (484)
Q Consensus 339 kl~e~~v~~av~~ 351 (484)
++++.+|++++.+
T Consensus 428 ~v~~~eiE~~l~~ 440 (516)
T PRK13383 428 NVYPRAVENALAA 440 (516)
T ss_pred EECHHHHHHHHHh
Confidence 9999999998875
No 76
>PRK07798 acyl-CoA synthetase; Validated
Probab=97.70 E-value=0.0017 Score=69.76 Aligned_cols=130 Identities=14% Similarity=0.025 Sum_probs=76.4
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCcee-EEeecCCCCCCCCcceeccCCceEEEeeecCCcCc
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECY-VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~-~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
|+++ .+.+|+ ......++++.+++++++ ..||+||.. ++.......+...+.-...+.. -.+.++.+
T Consensus 296 ~~l~---~i~~gG~~~~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~g~~~~~~~~-~~~i~~~~---- 366 (533)
T PRK07798 296 SSLF---AIASGGALFSPSVKEALLELLPNVVLT-DSIGSSETGFGGSGTVAKGAVHTGGPRFTIGP-RTVVLDED---- 366 (533)
T ss_pred CceE---EEEECCCCCCHHHHHHHHHHcCCCeEE-eeecccccccccccCCCCCCccCCCCccCCCc-eEEEECCC----
Confidence 4554 445554 244456667777778888 999999963 2322111111111111122222 24444432
Q ss_pred ccCCCceeecccccCCce--EEEEeccC-------------------CceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 277 EAVGEETVDFSGVEIGKM--YEVVVTTY-------------------RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~~--YeLVvTt~-------------------~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+.+ +..|+. .+++.+.. .|-.-|+|||++++.. .-.+.|+||.++
T Consensus 367 ----~~~-----~~~g~~~~g~l~~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~TGD~~~~~~----~g~l~~~GR~~~~ 433 (533)
T PRK07798 367 ----GNP-----VEPGSGEIGWIARRGHIPLGYYKDPEKTAETFPTIDGVRYAIPGDRARVEA----DGTITLLGRGSVC 433 (533)
T ss_pred ----CCC-----CCCCCCCeeEEEeecCccccccCChhhhHHhhccCCCCceEEcCcEEEEcC----CCcEEEEccccce
Confidence 222 335555 66666542 2223578999998843 236899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|++++.+.
T Consensus 434 i~~~G~~v~~~eIE~~l~~~ 453 (533)
T PRK07798 434 INTGGEKVFPEEVEEALKAH 453 (533)
T ss_pred EecCCEEeCHHHHHHHHHhC
Confidence 789999999999888753
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.70 E-value=0.00097 Score=78.87 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=82.5
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCcee--EEeecCCCC----------CCCCcceeccCCce
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECY--VGINLDIAQ----------PPQTTRFVMLPTAA 264 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~--~~i~~~~~~----------~~~~~~~~l~~~~~ 264 (484)
.|+++.+ .+|+ .....+++++.+| ++++ +.||+||+. +..+..... .+. ......|+.
T Consensus 897 ~~~lr~~---~~gg~~~~~~~~~~~~~~~g-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~-~vG~p~~~~- 969 (1146)
T PRK08633 897 FASLRLV---VAGAEKLKPEVADAFEEKFG-IRIL-EGYGATETSPVASVNLPDVLAADFKRQTGSKEG-SVGMPLPGV- 969 (1146)
T ss_pred CCCeeeE---EEcCCcCCHHHHHHHHHHhC-CCee-cccccccCcceEEEecCcccccccccccCCCCC-CccccCCCC-
Confidence 4677644 5454 2444566676675 8888 999999963 233211100 000 111122332
Q ss_pred EEEeeecCCcCcccCCCceeecccccCCceEEEEeccCC---ce-----------------eeeeeCCEEEEeeeeCCCc
Q 011497 265 YFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF-----------------YRYRLGDIVKVVDFYNSSP 324 (484)
Q Consensus 265 ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL-----------------yRYr~GDvV~v~g~~~~~P 324 (484)
-.+.+++++ ++ ++.+|+.+||+|+..+ |- -.|+|||+.++.. .-
T Consensus 970 ~v~i~d~~~-------~~-----~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~~~~TGD~~~~~~----~g 1033 (1146)
T PRK08633 970 AVRIVDPET-------FE-----ELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHLDE----DG 1033 (1146)
T ss_pred EEEEEcCCC-------Cc-----cCCCCCceEEEEcCCCccccccCCccchHHHhhcCCCCCeEECCCEEEEcC----Cc
Confidence 344554332 22 3558999999997642 21 3599999999854 34
Q ss_pred EEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 325 QVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 325 ~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.+.|+||.++ +.|++++..+|++++.+.
T Consensus 1034 ~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~ 1064 (1146)
T PRK08633 1034 FLTITDRYSRFAKIGGEMVPLGAVEEELAKA 1064 (1146)
T ss_pred eEEEEecccchhhhCcEEECHHHHHHHHHhc
Confidence 7899999998 889999999999999864
No 78
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.68 E-value=0.0022 Score=68.66 Aligned_cols=128 Identities=12% Similarity=0.038 Sum_probs=77.1
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE-Ee-ecCCC-CCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV-GI-NLDIA-QPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i-~~~~~-~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
+.+++ ++..|+ ....++++++.++ .+++ ..||+||+.. .+ +.... ..+...... . ..-++.++.+
T Consensus 261 ~~~lr---~i~~~g~~~~~~~~~~~~~~~~-~~~~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~~-~--~~~~~i~d~~- 331 (502)
T PRK08276 261 VSSLR---VAIHAAAPCPVEVKRAMIDWWG-PIIH-EYYASSEGGGVTVITSEDWLAHPGSVGKA-V--LGEVRILDED- 331 (502)
T ss_pred cccce---EEEecCCCCCHHHHHHHHHHhC-cHhh-hhcccccccceeEecCccccccCCCccee-c--ccEEEEECCC-
Confidence 34565 445444 2444566777666 6677 8999999743 22 11100 000001111 1 1223444321
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCCc---e--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYRG---F--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~G---L--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
+. .+..|+.+||+++.... . -.|++||++++.. .-.+.++||.++
T Consensus 332 -------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~~~~i 395 (502)
T PRK08276 332 -------GN-----ELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDE----DGYLYLTDRKSDMI 395 (502)
T ss_pred -------CC-----CCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEcC----CcCEEEeccCcceE
Confidence 22 24578999999994321 1 2578999998853 236899999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|+.++.+.
T Consensus 396 ~~~G~~v~~~~iE~~i~~~ 414 (502)
T PRK08276 396 ISGGVNIYPQEIENLLVTH 414 (502)
T ss_pred EeCCEEeCHHHHHHHHHhC
Confidence 889999999999998753
No 79
>PRK12467 peptide synthase; Provisional
Probab=97.67 E-value=0.00031 Score=92.92 Aligned_cols=131 Identities=15% Similarity=0.139 Sum_probs=80.7
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC---C---CcceeccCCceEEEeee
Q 011497 200 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---Q---TTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 200 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~---~---~~~~~l~~~~~ffEFip 270 (484)
.|.|+. ++.||- ..-..++++.++++.++ ++||.||+.+.......... + .......++...+ .+
T Consensus 3350 ~~~lr~---~~~gGe~~~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-v~- 3423 (3956)
T PRK12467 3350 CASLDI---YVFGGEAVPPAAFEQVKRKLKPRGLT-NGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIY-VL- 3423 (3956)
T ss_pred CCCceE---EEEecCCCCHHHHHHHHHhCCCCEEE-eCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEE-EE-
Confidence 356664 345542 33445566667778899 99999998654322111000 0 0011122232111 11
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC---Ccee---------------------eeeeCCEEEEeeeeCCCcEE
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------------RYRLGDIVKVVDFYNSSPQV 326 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy---------------------RYr~GDvV~v~g~~~~~P~i 326 (484)
++ +.++ +.+|+.+||.|... .|-| -|||||++++.. .-.+
T Consensus 3424 -d~------~~~~-----vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g~r~yrTGDl~~~~~----dG~l 3487 (3956)
T PRK12467 3424 -DG------QLNP-----VPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSGGRLYRTGDLARYRA----DGVI 3487 (3956)
T ss_pred -CC------CCCC-----CCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCCceeeccchhheecC----CCcE
Confidence 11 1333 44899999999654 2211 199999999843 3379
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 327 EFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 327 ~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+|+||.|+ |+|.++...+|+.++.+.
T Consensus 3488 ~~~GR~d~~iki~G~rIe~~EIE~~l~~~ 3516 (3956)
T PRK12467 3488 EYLGRIDHQVKIRGFRIELGEIEARLLQH 3516 (3956)
T ss_pred EEeccccceEeeceEeecHHHHHHHHhhC
Confidence 99999998 999999999999998753
No 80
>PRK07638 acyl-CoA synthetase; Validated
Probab=97.67 E-value=0.00046 Score=73.72 Aligned_cols=126 Identities=16% Similarity=0.050 Sum_probs=81.4
Q ss_pred EEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC--CcceeccCCceEEEeeecCCcCcccCCCce
Q 011497 208 CVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ--TTRFVMLPTAAYFEFLPFDMEKNEAVGEET 283 (484)
Q Consensus 208 ~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~--~~~~~l~~~~~ffEFip~~~~~~~~~~~~~ 283 (484)
.+.+|+ ...-..++++.++++.++ ..||+||+.......+..... .......++ ..++.++.+ +.
T Consensus 258 ~~~~G~~l~~~~~~~~~~~~~~~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~i~d~~--------g~- 326 (487)
T PRK07638 258 IISSGAKWEAEAKEKIKNIFPYAKLY-EFYGASELSFVTALVDEESERRPNSVGRPFHN-VQVRICNEA--------GE- 326 (487)
T ss_pred EEEcCCCCCHHHHHHHHHHcCCCeEE-EEecCCccCceEEecccccCCCCCCCCcccCC-cEEEEECCC--------CC-
Confidence 345554 344557778888889998 899999975432222111000 011112233 345666532 22
Q ss_pred eecccccCCceEEEEeccCC---ce-------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHH
Q 011497 284 VDFSGVEIGKMYEVVVTTYR---GF-------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERD 344 (484)
Q Consensus 284 l~l~ele~G~~YeLVvTt~~---GL-------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~ 344 (484)
.+..|+..||+|++.. |. -.|+|||+.++.. .-.+.|+||.++ +.|++++..+
T Consensus 327 ----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~d~----~g~l~i~GR~~d~i~~~G~~v~~~e 398 (487)
T PRK07638 327 ----EVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDE----EGFIYIVGREKNMILFGGINIFPEE 398 (487)
T ss_pred ----CCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeEcC----CCeEEEEecCCCeEEeCCEEECHHH
Confidence 2568999999998752 21 1579999987742 447899999998 8899999999
Q ss_pred HHHHHHHH
Q 011497 345 LMSAMESF 352 (484)
Q Consensus 345 v~~av~~~ 352 (484)
|++++.+.
T Consensus 399 iE~~l~~~ 406 (487)
T PRK07638 399 IESVLHEH 406 (487)
T ss_pred HHHHHHhC
Confidence 99988753
No 81
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=97.66 E-value=0.00085 Score=72.72 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=47.5
Q ss_pred ccCCceEEEEeccCC---cee---------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTYR---GFY---------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 289 le~G~~YeLVvTt~~---GLy---------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+..|+..||+|+..+ |.| -|+|||+.+.. + =.+.|+||.++ +.|++++..+|+++|.+.
T Consensus 367 ~~~g~~GEl~v~g~~~~~GY~~~~~~~~~~~~~TGDl~~~~---~--G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~ 440 (525)
T PRK05851 367 VAGREIGEIEIRGASMMSGYLGQAPIDPDDWFPTGDLGYLV---D--GGLVVCGRAKELITVAGRNIFPTEIERVAAQV 440 (525)
T ss_pred CCCCCeEEEEEecCchhhccccCCccCCCCceeccceEEEE---C--CEEEEEeecCCEEEECCEEeCHHHHHHHHHhC
Confidence 568999999997642 322 48999999763 1 26899999998 889999999999998864
No 82
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=97.66 E-value=0.0021 Score=70.24 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=72.0
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeE-Ee-ecCCC-CCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccC
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYV-GI-NLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEI 291 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i-~~~~~-~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~ 291 (484)
....+++++.++ ++++ .+||+||+.. .. +.... ..+..... ..|+.. ++.++.+ +.. +..
T Consensus 347 ~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~~~-v~ivd~~--------~~~-----~~~ 409 (562)
T PRK12492 347 KATAERWEQLTG-CTIV-EGYGLTETSPVASTNPYGELARLGTVGI-PVPGTA-LKVIDDD--------GNE-----LPL 409 (562)
T ss_pred HHHHHHHHHHhC-Ccee-eccCccccCceeeecCCcccccCCccce-ecCCCE-EEEECCC--------CCC-----CCC
Confidence 333455565555 8888 9999999632 22 11100 00111111 223322 3444422 222 347
Q ss_pred CceEEEEeccCC---cee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 292 GKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 292 G~~YeLVvTt~~---GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
|+.+||+|+..+ |.| .|++||++++.. .-.+.|+||.++ +.|+++++.+|++++.+
T Consensus 410 g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~~~----~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~ 485 (562)
T PRK12492 410 GERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDP----DGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMA 485 (562)
T ss_pred CCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEECC----CCeEEEecccCCeEEECCEEECHHHHHHHHHh
Confidence 889999998742 222 399999999853 236899999998 88999999999998874
No 83
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.64 E-value=0.0014 Score=77.04 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=81.4
Q ss_pred CCCceEEEEecCch-hhhHHHHHHHhCCCCccccccccCceeEEe-ecCCCCCCCCcceeccCCceEEEeeecCCc--Cc
Q 011497 201 PNVRYIKCVTTGSM-SQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQPPQTTRFVMLPTAAYFEFLPFDME--KN 276 (484)
Q Consensus 201 P~L~~i~~~~~G~~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i-~~~~~~~~~~~~~~l~~~~~ffEFip~~~~--~~ 276 (484)
+.|+++ .+|++ ....+++++.+++++++ ++||.||+.+.+ +.. ...+. ..-...|+..-++..+.+.. +-
T Consensus 720 ~slr~~---~g~gl~~~l~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~-~~~~~-svG~p~pg~~~v~i~~~d~~~g~l 793 (994)
T PRK07868 720 HPVRLF---IGSGMPTGLWERVVEAFAPAHVV-EFFATTDGQAVLANVS-GAKIG-SKGRPLPGAGRVELAAYDPEHDLI 793 (994)
T ss_pred CceEEE---ecCCCCHHHHHHHHHHhCchhee-eeeecccccccccccC-CCCCc-ccCCccCCCCceeEEEecCcCCce
Confidence 455543 35554 34457777878878898 999999985432 111 11111 11122344322333322110 00
Q ss_pred -ccCCCceeecccccCCceEEEEeccC----------Cc-----eeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cce
Q 011497 277 -EAVGEETVDFSGVEIGKMYEVVVTTY----------RG-----FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSF 337 (484)
Q Consensus 277 -~~~~~~~l~l~ele~G~~YeLVvTt~----------~G-----LyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~g 337 (484)
..+++ ...++++|+.+||.+... .| ---|+|||+.++.- -=.+.|+||.++ +.|
T Consensus 794 i~d~~G---~~~~~~~ge~Gel~~~~~~~~~p~~t~~~~~~~~~dgw~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~G 866 (994)
T PRK07868 794 LEDDRG---FVRRAEVNEVGVLLARARGPIDPTASVKRGVFAPADTWISTEYLFRRDD----DGDYWLVDRRGSVIRTAR 866 (994)
T ss_pred eecCCc---eEEEcCCCCceEEEEecCCCCChhhhhHhcccccCCEEEeccceEEEcC----CCCEEEeccCCCEEEeCC
Confidence 00111 012367899999998643 12 23488999998742 236899999999 448
Q ss_pred eecCHHHHHHHHHHH
Q 011497 338 EIISERDLMSAMESF 352 (484)
Q Consensus 338 Ekl~e~~v~~av~~~ 352 (484)
++++..+|++++.+.
T Consensus 867 ~~I~p~EIE~~L~~h 881 (994)
T PRK07868 867 GPVYTEPVTDALGRI 881 (994)
T ss_pred ceEcHHHHHHHHhcC
Confidence 999999999988853
No 84
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=97.63 E-value=0.0013 Score=71.53 Aligned_cols=130 Identities=13% Similarity=0.165 Sum_probs=79.0
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCC-C-CCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQP-P-QTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~-~-~~~~~~l~~~~~ffEFip~~~~ 274 (484)
+++++.+ .+|+ .....+++++.++ ++++ ..||+||+...+...+... . ........++. -...++.+
T Consensus 328 l~~lr~v---~~gG~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~-~v~i~d~~-- 399 (560)
T PRK08751 328 FSSLKMT---LGGGMAVQRSVAERWKQVTG-LTLV-EAYGLTETSPAACINPLTLKEYNGSIGLPIPST-DACIKDDA-- 399 (560)
T ss_pred hhhheee---eeCCCCCCHHHHHHHHHHhC-CeEE-EeeccccCCCceecccccccccCCCcCccCCCc-eEEEECCC--
Confidence 4566643 4444 2344456676665 7888 8999999754332221100 0 00112222222 23333321
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC---cee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+.. +..|+.+||+|++.. |.| -|+|||++++.. .-.+.++||.++
T Consensus 400 ------~~~-----~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~~~----~g~l~i~GR~~d~i~ 464 (560)
T PRK08751 400 ------GTV-----LAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDE----QGFVYIVDRKKDMIL 464 (560)
T ss_pred ------CCC-----CCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEEcC----CceEEEEeechhhee
Confidence 222 457889999998752 222 289999998843 337899999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++.+.+|+.++.+.
T Consensus 465 ~~G~~v~p~eiE~~l~~~ 482 (560)
T PRK08751 465 VSGFNVYPNEIEDVIAMM 482 (560)
T ss_pred ECCEEEcHHHHHHHHHhC
Confidence 889999999999998754
No 85
>PRK09192 acyl-CoA synthetase; Validated
Probab=97.62 E-value=0.0019 Score=70.91 Aligned_cols=59 Identities=15% Similarity=0.062 Sum_probs=47.6
Q ss_pred ccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 289 le~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+..|+..||+++.. .|.| .|++||++.+ . .-.+.|+||.++ +.|++++..+|+++|
T Consensus 406 ~~~g~~Gel~i~g~~~~~gY~~~~~~~~~~~~dgw~~TGDlg~~-~----~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l 480 (579)
T PRK09192 406 LPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-L----DGYLYITGRAKDLIIINGRNIWPQDIEWIA 480 (579)
T ss_pred CCCCCEEEEEecCCchhhhhcCCccccccccCCceeeccceeeE-E----CCEEEEEeccccEEEECCCccCHHHHHHHH
Confidence 45788999999764 2222 5899999976 2 237999999998 889999999999999
Q ss_pred HHH
Q 011497 350 ESF 352 (484)
Q Consensus 350 ~~~ 352 (484)
++.
T Consensus 481 ~~~ 483 (579)
T PRK09192 481 EQE 483 (579)
T ss_pred Hhc
Confidence 864
No 86
>PRK13388 acyl-CoA synthetase; Provisional
Probab=97.60 E-value=0.0022 Score=69.85 Aligned_cols=123 Identities=17% Similarity=0.113 Sum_probs=72.9
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc-----ccCCCceeecccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN-----EAVGEETVDFSGV 289 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~-----~~~~~~~l~l~el 289 (484)
.....++.+.++ ++++ ..||.||+...+...+..+++.... ..|+ .++++.+..+. -++++..+ .
T Consensus 277 ~~~~~~~~~~~~-~~l~-~~YG~tE~~~~~~~~~~~~~~~vG~-p~~g---~~i~~~~~~~~~~~~~~d~~g~~~----~ 346 (540)
T PRK13388 277 PRDIAEFSRRFG-CQVE-DGYGSSEGAVIVVREPGTPPGSIGR-GAPG---VAIYNPETLTECAVARFDAHGALL----N 346 (540)
T ss_pred HHHHHHHHHHhC-Ccee-cccccccccceeecCCCCCCCCCCC-CCCC---cEEEcCCCCccccceeccCccccc----c
Confidence 334455666565 8888 9999999754332222222221222 2344 34443322100 00111111 1
Q ss_pred cCCceEEEEec-cC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 290 EIGKMYEVVVT-TY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 290 e~G~~YeLVvT-t~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
..|+.+||+++ .. .|.| .|+|||+.+... .-.+.|+||.++ +.|+++++.+|++++
T Consensus 347 ~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~~~TGD~~~~~~----dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l 422 (540)
T PRK13388 347 ADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGMYWSGDLAYRDA----DGWIYFAGRTADWMRVDGENLSAAPIERIL 422 (540)
T ss_pred CCCcceEEEEecCCcccccccCChHHHHHHhhcCceeccceEEEcC----CCcEEEeccCCceEEECCEEeCHHHHHHHH
Confidence 24678999998 32 2333 599999998843 236889999998 789999999999988
Q ss_pred HH
Q 011497 350 ES 351 (484)
Q Consensus 350 ~~ 351 (484)
.+
T Consensus 423 ~~ 424 (540)
T PRK13388 423 LR 424 (540)
T ss_pred Hh
Confidence 75
No 87
>PRK07787 acyl-CoA synthetase; Validated
Probab=97.60 E-value=0.0024 Score=68.00 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=75.6
Q ss_pred CCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC-CCcceeccCCceEEEeeecCCcCc
Q 011497 201 PNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP-QTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 201 P~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~-~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
++++++ ..|+ + ....+++++.++ .+++ ..||.||+.+.+........ ........++. -.++++.+
T Consensus 241 ~~l~~~---~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~-~~~i~d~~---- 310 (471)
T PRK07787 241 RGARLL---VSGSAALPVPVFDRLAALTG-HRPV-ERYGMTETLITLSTRADGERRPGWVGLPLAGV-ETRLVDED---- 310 (471)
T ss_pred cceeEE---EECCCCCCHHHHHHHHHHcC-CCee-cccCccccCcceecCCCCcccCCcccccCCCc-EEEEECCC----
Confidence 566644 4444 2 344566777665 7888 99999998653321111100 00111122222 23344322
Q ss_pred ccCCCceeecccccCCc-eEEEEeccCC---cee--------------eeeeCCEEEEeeeeCCCcEEEEeeeC-CC---
Q 011497 277 EAVGEETVDFSGVEIGK-MYEVVVTTYR---GFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRA-PK--- 334 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~-~YeLVvTt~~---GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~-~~--- 334 (484)
+.+++ ..|+ .+||+++..+ |.| -|+|||+..+.. .-.+.++||. ++
T Consensus 311 ----~~~~~----~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~~~~----dg~l~~~GR~~d~~i~ 378 (471)
T PRK07787 311 ----GGPVP----HDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDP----DGMHRIVGRESTDLIK 378 (471)
T ss_pred ----CCCCC----CCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEEEcC----CCCEEEeCCCCceeEe
Confidence 22221 1233 6899998742 322 399999888732 3478999996 55
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
+.|+|+++.+|+++|.+
T Consensus 379 ~~G~~v~~~eIE~~l~~ 395 (471)
T PRK07787 379 SGGYRIGAGEIETALLG 395 (471)
T ss_pred eCCEEECHHHHHHHHHh
Confidence 88999999999999975
No 88
>PRK06188 acyl-CoA synthetase; Validated
Probab=97.60 E-value=0.0025 Score=68.71 Aligned_cols=129 Identities=17% Similarity=0.125 Sum_probs=77.1
Q ss_pred CCCCceEEEEecCc--hhh-hHHHHHHHhCCCCccccccccCceeEEeecCCC-CC----CC--CcceeccCCceEEEee
Q 011497 200 WPNVRYIKCVTTGS--MSQ-YCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QP----PQ--TTRFVMLPTAAYFEFL 269 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~-y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~-~~----~~--~~~~~l~~~~~ffEFi 269 (484)
.++++.+ ..|+ +.+ ...++.+.++ .++. ..||+||+..++..... .. +. .......|+ .-.+.+
T Consensus 280 l~~lr~~---~~gg~~~~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g-~~v~i~ 353 (524)
T PRK06188 280 LSSLETV---YYGASPMSPVRLAEAIERFG-PIFA-QYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPG-LRVALL 353 (524)
T ss_pred CcceeEE---EEcCCCCCHHHHHHHHHHhC-chhh-heeCccccCCceeecCchhccccccccCCccccccCC-cEEEEE
Confidence 4566654 3333 332 3455555566 5666 89999998433321111 00 00 001112222 224444
Q ss_pred ecCCcCcccCCCceeecccccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCC
Q 011497 270 PFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAP 333 (484)
Q Consensus 270 p~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~ 333 (484)
+.+ +. ++..|+..||++++.. |.| .|++||+.+... .-.+.|+||.+
T Consensus 354 ~~~--------~~-----~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~ 416 (524)
T PRK06188 354 DED--------GR-----EVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDE----DGFYYIVDRKK 416 (524)
T ss_pred cCC--------CC-----CCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecceEEEcC----CccEEEEeccc
Confidence 422 22 2458999999999752 221 499999988843 23788999999
Q ss_pred C---cceeecCHHHHHHHHHH
Q 011497 334 K---SSFEIISERDLMSAMES 351 (484)
Q Consensus 334 ~---i~gEkl~e~~v~~av~~ 351 (484)
+ +.|+++++.+|++++.+
T Consensus 417 ~~i~~~G~~i~~~~IE~~l~~ 437 (524)
T PRK06188 417 DMIVTGGFNVFPREVEDVLAE 437 (524)
T ss_pred cceecCCEEECHHHHHHHHHh
Confidence 8 88999999999998864
No 89
>PLN02614 long-chain acyl-CoA synthetase
Probab=97.59 E-value=0.00088 Score=75.20 Aligned_cols=131 Identities=15% Similarity=0.163 Sum_probs=78.0
Q ss_pred CCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEE--eecCCC-CCCCCcceeccCCceEEEeeecCCcC
Q 011497 201 PNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVG--INLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 201 P~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~--i~~~~~-~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
++|+++ .+|+ ...-..++.+.+++++++ .+||.||+... ++.... ..++ ..-...|+.. .-.+++++.
T Consensus 386 ~~lr~~---~~Gga~l~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~g-svG~p~pg~e-vki~d~~~~- 458 (666)
T PLN02614 386 GNVRII---LSGAAPLASHVESFLRVVACCHVL-QGYGLTESCAGTFVSLPDELDMLG-TVGPPVPNVD-IRLESVPEM- 458 (666)
T ss_pred CcEEEE---EEcCCCCCHHHHHHHHHhcCCCEE-eeCchHhhhhheeeeccccCCcCC-cccCcCCceE-EEEeeeccc-
Confidence 456643 4444 334445555666778998 99999996432 211100 0011 1111233322 233443221
Q ss_pred cccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c-
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S- 335 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i- 335 (484)
+.. ++..|+.+||+|... .|-| -|+|||++++.. .=.+.|+||.++ +
T Consensus 459 ----~~~-----~~~~g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~gR~kd~ik~~ 525 (666)
T PLN02614 459 ----EYD-----ALASTPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQP----NGSMKIIDRKKNIFKLS 525 (666)
T ss_pred ----Ccc-----cCCCCCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcC----CCCEEEEEcchhceecC
Confidence 112 245788999999654 3433 489999999853 225899999999 3
Q ss_pred ceeecCHHHHHHHHHH
Q 011497 336 SFEIISERDLMSAMES 351 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~ 351 (484)
.||++++.+|++++.+
T Consensus 526 ~G~~V~p~eIE~~l~~ 541 (666)
T PLN02614 526 QGEYVAVENIENIYGE 541 (666)
T ss_pred CCeeecHHHHHHHHhc
Confidence 3899999999988874
No 90
>PRK05691 peptide synthase; Validated
Probab=97.58 E-value=0.00075 Score=90.03 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=77.4
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeEEee---cCCCCCCCC--cceeccCCceEEEeeecC
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIAQPPQT--TRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~---~~~~~~~~~--~~~~l~~~~~ffEFip~~ 272 (484)
|+|+.+ ..||- ..-.+++.+.++++.++ +.||.||+.+.+. ......... ......++...| .++
T Consensus 3983 ~~lr~~---~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~-v~d-- 4055 (4334)
T PRK05691 3983 DGLRWM---LPTGEAMPPELARQWLQRYPQIGLV-NAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLY-LLD-- 4055 (4334)
T ss_pred CCceEE---EecCCcCCHHHHHHHHHhCCCCeEE-eCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEE-EEC--
Confidence 567644 44442 22234444556779999 9999999876432 111111100 001111222111 111
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Cc---------------------eeeeeeCCEEEEeeeeCCCcEEEE
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RG---------------------FYRYRLGDIVKVVDFYNSSPQVEF 328 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~G---------------------LyRYr~GDvV~v~g~~~~~P~i~F 328 (484)
+ +.+. +..|..+||+|... .| ---|||||+++... .=.++|
T Consensus 4056 ~------~~~~-----~p~g~~GEL~i~G~~v~~GY~~~~~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~~ 4120 (4334)
T PRK05691 4056 E------ALEL-----VPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARRRS----DGVLEY 4120 (4334)
T ss_pred C------CCCC-----CCCCCceEEEEecccccccccCCcccchhhcccCCCCCCCceeeccCcceeecC----CCcEEE
Confidence 1 1222 34899999999753 22 11399999999953 226999
Q ss_pred eeeCCC---cceeecCHHHHHHHHHHH
Q 011497 329 VMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 329 ~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+||.|+ |+|.++...+|+.++.+.
T Consensus 4121 ~GR~d~qvki~G~riel~eIE~~l~~~ 4147 (4334)
T PRK05691 4121 VGRIDHQVKIRGYRIELGEIEARLHEQ 4147 (4334)
T ss_pred ecccCCcEEeceEEecHHHHHHHHHhC
Confidence 999998 999999999999988753
No 91
>PRK13391 acyl-CoA synthetase; Provisional
Probab=97.57 E-value=0.0035 Score=67.42 Aligned_cols=126 Identities=16% Similarity=0.049 Sum_probs=77.1
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC----CCCCCcceeccCCceEEEeeecCC
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA----QPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~----~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
++++ ++.+|+ .....+.+++.+| .+++ ..||+||+....-.... .+...+ . ..+. ..+.++.+
T Consensus 275 ~~l~---~~~~gg~~~~~~~~~~~~~~~g-~~v~-~~YG~tE~~~~~~~~~~~~~~~~~~vG-~-~~~g--~~~i~d~~- 344 (511)
T PRK13391 275 SSLE---VAIHAAAPCPPQVKEQMIDWWG-PIIH-EYYAATEGLGFTACDSEEWLAHPGTVG-R-AMFG--DLHILDDD- 344 (511)
T ss_pred ccee---EEEEccCCCCHHHHHHHHHHcC-Ccee-eeeccccccceEEecCccccccCCCcC-C-cccc--eEEEECCC-
Confidence 4555 334444 2445567777776 6777 99999997432111111 111111 1 1222 24444422
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCCce-----------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYRGF-----------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~GL-----------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
++. +..|+..||++.....+ --|+|||+.+... .-.+.|+||.++
T Consensus 345 -------~~~-----~~~g~~Gel~~~g~~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~~~----~g~l~~~gR~~~~i 408 (511)
T PRK13391 345 -------GAE-----LPPGEPGTIWFEGGRPFEYLNDPAKTAEARHPDGTWSTVGDIGYVDE----DGYLYLTDRAAFMI 408 (511)
T ss_pred -------CCC-----CCCCCceEEEEecCcceEEcCChhHhHHhhccCCCEEecCCEEEECC----CccEEEeccCCCEE
Confidence 222 35788899999774211 2477999887732 346899999998
Q ss_pred -cceeecCHHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~~ 352 (484)
+.|+++++.+|++++.+.
T Consensus 409 ~~~G~~v~~~eie~~l~~~ 427 (511)
T PRK13391 409 ISGGVNIYPQEAENLLITH 427 (511)
T ss_pred EeCCEEECHHHHHHHHHhC
Confidence 889999999999998853
No 92
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.55 E-value=0.011 Score=65.33 Aligned_cols=248 Identities=16% Similarity=0.153 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCCccccccccCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeE-EeecCCCC-CC
Q 011497 177 PDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQ-PP 252 (484)
Q Consensus 177 p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~-~~ 252 (484)
|...+.|++...+. ....+. +.|+ .|..+|. -..-.+.+.+.++.-|+. +.|+.||... -+...+.. +.
T Consensus 339 pt~~r~l~~~~~~~---~~~~~~-~sLk--~~~S~Gepi~~~~~ew~~~~~~~~pv~-e~~~qtEtG~~~i~~~~g~~p~ 411 (626)
T KOG1175|consen 339 PTAYRLLRRLGQED---VTSYSL-KSLR--TCGSVGEPINPEAWEWWKRVTGLDPIY-ETYGQTETGGICITPKPGKLPI 411 (626)
T ss_pred cHHHHHHHHhcccc---cccccc-ceEE--EEeecCccCCcchHHHHHHhcCccchh-hceeeeccCceeeeccCCCCCc
Confidence 44455455444431 111333 4555 3333443 233335566667644677 9999999532 22223322 22
Q ss_pred CCcceeccCCc-eEEEeeecCCcCcccCCCceeecccccCC-ceEEEEeccC--Cc----eee----------------e
Q 011497 253 QTTRFVMLPTA-AYFEFLPFDMEKNEAVGEETVDFSGVEIG-KMYEVVVTTY--RG----FYR----------------Y 308 (484)
Q Consensus 253 ~~~~~~l~~~~-~ffEFip~~~~~~~~~~~~~l~l~ele~G-~~YeLVvTt~--~G----LyR----------------Y 308 (484)
..++.- .|.. ...+.++++ ++. ++.+ +..||+++.. .| +|+ |
T Consensus 412 ~pg~~~-~p~~g~~v~i~de~--------g~~-----~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~y 477 (626)
T KOG1175|consen 412 KPGSAG-KPFPGYDVQILDEN--------GNE-----LPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGYY 477 (626)
T ss_pred CccccC-CCCCCcceEEECCC--------CCC-----cCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCceE
Confidence 223332 2222 234444432 332 3333 7788988765 23 222 8
Q ss_pred eeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCce-EEEEE
Q 011497 309 RLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKK-LMIFV 384 (484)
Q Consensus 309 r~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~-Y~l~v 384 (484)
.+||-.+.+ +.=-|.+.||.|+ +.|-+++-.+|++|+.+.-. +.|-+|+.-.....+. -..||
T Consensus 478 ~tGD~~~rd----~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~---------VaEsAvVg~p~~~~ge~v~aFv 544 (626)
T KOG1175|consen 478 FTGDGGRRD----EDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPA---------VAESAVVGSPDPIKGEVVLAFV 544 (626)
T ss_pred EecCceEEc----CCceEEEEecccccccccceeecHHHHHHHHhhCcc---------hhheeeecCCCCCCCeEEEEEE
Confidence 999998885 3557899999999 88999999999999965322 3344443311111222 23566
Q ss_pred EeecCccccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCC-CCcEEEEeC---CChHHHHHHHHHHcCCCCCCCCCCcc
Q 011497 385 EIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEI-SPLSVSIVK---PGTFDRLLQVAIEKGAPASQYKPPKI 459 (484)
Q Consensus 385 E~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l-~p~~v~~v~---~gtf~~~~~~~~~~G~~~~Q~K~Pr~ 459 (484)
=++.+ ..+.+ ++.++|-..+ | ..|-+ .|-.|..|+ .=.....+++.+.+-.+.-|++-.-.
T Consensus 545 vl~~g----~~~~~---~L~kel~~~V-------R~~igp~a~P~~I~~v~~LPkTrSGKimRr~lrki~~g~~~~d~st 610 (626)
T KOG1175|consen 545 VLKSG----SHDPE---QLTKELVKHV-------RSVIGPYAVPRLIVFVPGLPKTRSGKIMRRALRKIASGKAVGDTST 610 (626)
T ss_pred EEcCC----CCChH---HHHHHHHHHH-------HhhcCcccccceeEecCCCCccccchhHHHHHHHHhccCccccccc
Confidence 56543 12222 2334444434 2 22333 444555552 22345566666665433338999999
Q ss_pred cCCHHHHHHHhcc
Q 011497 460 VRNREIVEFMEGC 472 (484)
Q Consensus 460 ~~~~~~~~~l~~~ 472 (484)
+.|++.++.+.+.
T Consensus 611 ~~dp~v~~~~~~~ 623 (626)
T KOG1175|consen 611 LADPSVIDHLRSI 623 (626)
T ss_pred cCChHHHHHHHHh
Confidence 9999999988764
No 93
>PRK07470 acyl-CoA synthetase; Validated
Probab=97.54 E-value=0.0022 Score=69.17 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=47.5
Q ss_pred ccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 289 le~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+..|+..||+|++.. |.| -|+|||+.++.. ...+.+.||.++ +.|++++..+|+++|
T Consensus 361 ~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~TGDl~~~~~----~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l 436 (528)
T PRK07470 361 LPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDA----RGFLYITGRASDMYISGGSNVYPREIEEKL 436 (528)
T ss_pred CCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEecceeEEEcc----CCeEEEeCCccceEEeCCEEECHHHHHHHH
Confidence 458899999998752 222 299999988743 347999999998 889999999999998
Q ss_pred HH
Q 011497 350 ES 351 (484)
Q Consensus 350 ~~ 351 (484)
.+
T Consensus 437 ~~ 438 (528)
T PRK07470 437 LT 438 (528)
T ss_pred Hh
Confidence 74
No 94
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.51 E-value=0.0041 Score=67.95 Aligned_cols=126 Identities=21% Similarity=0.225 Sum_probs=78.9
Q ss_pred EEEecCch---hhhHHHHHHHhCCCCccccccccCceeE--EeecCCC--CCCCCcceeccCCceEEEeeecCCcCcccC
Q 011497 207 KCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIA--QPPQTTRFVMLPTAAYFEFLPFDMEKNEAV 279 (484)
Q Consensus 207 ~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~~~~~ 279 (484)
-++.+|+. ....+++++.++..+++ .+||.||+.. ..+..+. ...... -...|+ .-...++.+.
T Consensus 294 r~~~~gg~~~~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~-G~~~pg-~~v~Ivd~~~------ 364 (534)
T COG0318 294 RLVLSGGAPLPPELLERFEERFGPIAIL-EGYGLTETSPVVTINPPDDLLAKPGSV-GRPLPG-VEVRIVDPDG------ 364 (534)
T ss_pred EEEEecCCcCCHHHHHHHHHHhCCCceE-EeecccccCceeecCCCchhhhcCCcc-cccCCC-cEEEEEeCCC------
Confidence 35577763 56667888888877788 9999999853 2222211 011111 122222 2233344332
Q ss_pred CCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceee
Q 011497 280 GEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEI 339 (484)
Q Consensus 280 ~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEk 339 (484)
.+.+ +|+.+||.|-.. .|-| -|+|||+.++.. .-.+.|+||.++ ..||+
T Consensus 365 -~~~~------pg~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGDlg~~d~----~G~l~i~gR~kd~I~~gG~n 433 (534)
T COG0318 365 -GEVL------PGEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDE----DGYLYIVGRLKDLIISGGEN 433 (534)
T ss_pred -CccC------CCCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecceEEEcC----CccEEEEeccceEEEeCCeE
Confidence 1222 388889988532 3322 289999996644 246999999988 77899
Q ss_pred cCHHHHHHHHHHH
Q 011497 340 ISERDLMSAMESF 352 (484)
Q Consensus 340 l~e~~v~~av~~~ 352 (484)
+++.+|++++.+.
T Consensus 434 i~p~eiE~~l~~~ 446 (534)
T COG0318 434 IYPEEIEAVLAEH 446 (534)
T ss_pred ECHHHHHHHHHhC
Confidence 9999999998865
No 95
>PRK08308 acyl-CoA synthetase; Validated
Probab=97.51 E-value=0.0023 Score=67.10 Aligned_cols=56 Identities=14% Similarity=0.005 Sum_probs=45.8
Q ss_pred CCceEEEEeccCCceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 291 IGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 291 ~G~~YeLVvTt~~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+..|+++++..| +|+|||+++... .-.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 278 ~~~~gel~v~~~~~--~~~TGDl~~~~~----dg~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~ 336 (414)
T PRK08308 278 ENAPEEIVVKMGDK--EIFTKDLGYKSE----RGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRL 336 (414)
T ss_pred CCCCceEEEEcCCc--eEECCceEEECC----CccEEEecccCCeEEECCEEECHHHHHHHHHhC
Confidence 46678999988765 578999998743 236899999998 999999999999988753
No 96
>PRK06178 acyl-CoA synthetase; Validated
Probab=97.47 E-value=0.0034 Score=68.56 Aligned_cols=119 Identities=15% Similarity=0.198 Sum_probs=72.9
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeE--EeecCCCCCCCC------cceeccCCceEEEeeecCCcCcccCCCceeec
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQPPQT------TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDF 286 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~~~~~~~~------~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l 286 (484)
....+.+++.+| ..++...||.||... ++.......+.+ ......|+. -++++++++ .+.
T Consensus 341 ~~~~~~~~~~~g-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~-~v~v~d~~~-------~~~--- 408 (567)
T PRK06178 341 PDYRQRWRALTG-SVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGT-EFKICDFET-------GEL--- 408 (567)
T ss_pred HHHHHHHHHHhC-CcccccccccccccccceeccccccCccccccCCcccccccCCc-EEEEEcCCC-------CCc---
Confidence 445566677677 445536899999643 221110000000 011223333 245665432 222
Q ss_pred ccccCCceEEEEeccCC---ce----------e---eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHH
Q 011497 287 SGVEIGKMYEVVVTTYR---GF----------Y---RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMS 347 (484)
Q Consensus 287 ~ele~G~~YeLVvTt~~---GL----------y---RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~ 347 (484)
+..|+..||++...+ |. + .|+|||++++.+ .-.+.|+||.++ +.|++++..+|++
T Consensus 409 --~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~~~TGDl~~~~~----~g~l~i~GR~~d~i~~~G~~i~~~eiE~ 482 (567)
T PRK06178 409 --LPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDE----QGFLHYLGRRKEMLKVNGMSVFPSEVEA 482 (567)
T ss_pred --CCCCCceEEEEECCcccccccCChhhhhhcccCCceeecceEEEec----CCeEEEEecccccEEECCEEECHHHHHH
Confidence 347888999996642 21 1 499999998843 346899999998 8899999999999
Q ss_pred HHHH
Q 011497 348 AMES 351 (484)
Q Consensus 348 av~~ 351 (484)
++.+
T Consensus 483 ~l~~ 486 (567)
T PRK06178 483 LLGQ 486 (567)
T ss_pred HHHh
Confidence 8875
No 97
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=97.47 E-value=0.00054 Score=71.32 Aligned_cols=117 Identities=16% Similarity=0.209 Sum_probs=75.1
Q ss_pred cCCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCceeE-Eeec--CCC-CCCCCcceeccCCceEEEeeecCCc
Q 011497 199 LWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV-GINL--DIA-QPPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 199 lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~--~~~-~~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
-+++|+.|.+....-.....+++++.++.++++ ..||+||+.. ++.. ... ..++ ......| ..-.+.++.++
T Consensus 275 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~tE~~~~~~~~~~~~~~~~~~-~~G~~~~-~~~~~ivd~~~- 350 (417)
T PF00501_consen 275 DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPII-NLYGSTETGSIATIRPPEDDIEKPG-SVGKPLP-GVEVKIVDPNT- 350 (417)
T ss_dssp TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEE-EEEEEGGGSSEEEEEETTTHHSSTT-SEBEEST-TEEEEEECTTT-
T ss_pred ccccccccccccccCChhhccccccccccccce-ecccccccceeeecccccccccccc-ccccccc-ccccccccccc-
Confidence 457788765422222466668888888866888 9999999644 4422 111 0111 1233344 44577887653
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
++++ ..|+.+||+|+.. .|.| .|||||++++.. .-.+.++||.++
T Consensus 351 ------~~~~-----~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~g~~d~----~G~~~~~GR~~~ 412 (417)
T PF00501_consen 351 ------GEPL-----PPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDLGRLDE----DGYLYILGRSDD 412 (417)
T ss_dssp ------SSBE-----STTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEEEEEET----TSEEEEEEEGSC
T ss_pred ------cccc-----cccccccccccCCccceeeeccccccccccccccceecceEEEECC----CCeEEEEEeeCC
Confidence 3333 5899999999965 3322 499999999942 249999999998
No 98
>PLN03102 acyl-activating enzyme; Provisional
Probab=97.46 E-value=0.0046 Score=68.00 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=45.5
Q ss_pred CceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 292 GKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 292 G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
|+.+||+|+.. .|.| +|+|||+++.. ..-.+.|+||.++ +.|++++..+|++++.+.
T Consensus 390 ~~~GEl~v~g~~~~~GY~~~~~~t~~~f~~gw~~TGDlg~~d----~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 465 (579)
T PLN03102 390 KTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNTGDVGVIH----PDGHVEIKDRSKDIIISGGENISSVEVENVLYKY 465 (579)
T ss_pred CCceEEEEECcchhhhhcCChhhhHhhhccCceecCceEEEc----CCCeEEEEeccCcEEEECCEEECHHHHHHHHHhC
Confidence 35789999863 3332 69999999983 2347899999998 788999999999999853
No 99
>PRK12316 peptide synthase; Provisional
Probab=97.45 E-value=0.00073 Score=91.18 Aligned_cols=130 Identities=14% Similarity=0.115 Sum_probs=80.1
Q ss_pred CCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCceeEEeecCC---CCCCCCcceeccCCceEEEeeecCCcCc
Q 011497 200 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI---AQPPQTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 200 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~---~~~~~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
.|+|+. +..||-....+.++++..+++++ ++||.||+.+...... ............++.. ...++.
T Consensus 3310 ~~~lr~---~~~gGe~l~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~----- 3379 (5163)
T PRK12316 3310 CTSLKR---IVCGGEALPADLQQQVFAGLPLY-NLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRA-CYILDG----- 3379 (5163)
T ss_pred CCcceE---EEEccccCCHHHHHHHHhCCcEe-eccCCCccEeeEeEEeccCCCCCCCccceecCCCE-EEEECC-----
Confidence 367764 35565444444455544568999 9999999876432111 1000001111223322 222321
Q ss_pred ccCCCceeecccccCCceEEEEeccCCcee------------------------eeeeCCEEEEeeeeCCCcEEEEeeeC
Q 011497 277 EAVGEETVDFSGVEIGKMYEVVVTTYRGFY------------------------RYRLGDIVKVVDFYNSSPQVEFVMRA 332 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~~YeLVvTt~~GLy------------------------RYr~GDvV~v~g~~~~~P~i~F~gR~ 332 (484)
+.+. +.+|..+||+|... |+. -|+|||+++... .-.++|+||.
T Consensus 3380 ---~~~~-----~p~G~~GEl~i~G~-~v~~GY~~~~~~t~~~f~~~p~~~~~~~y~TGDl~~~~~----dG~l~~~GR~ 3446 (5163)
T PRK12316 3380 ---SLEP-----VPVGALGELYLGGE-GLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYRA----DGVIEYIGRV 3446 (5163)
T ss_pred ---CCCC-----CCCCCCceEEeccc-ccchhcCCChhhchhhCCCCCCCCCCeeEecCceEEECC----CCCEEEeccc
Confidence 1233 34899999999653 122 299999999842 3379999999
Q ss_pred CC---cceeecCHHHHHHHHHHH
Q 011497 333 PK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 333 ~~---i~gEkl~e~~v~~av~~~ 352 (484)
|+ ++|.++...+|+.++.+.
T Consensus 3447 d~qvKi~G~rIel~eIE~~l~~~ 3469 (5163)
T PRK12316 3447 DHQVKIRGFRIELGEIEARLLEH 3469 (5163)
T ss_pred CCeEeeCcEeeChHHHHHHHHhC
Confidence 98 999999999999988753
No 100
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=97.44 E-value=0.0016 Score=69.49 Aligned_cols=58 Identities=10% Similarity=0.170 Sum_probs=45.0
Q ss_pred CCceEEEEeccC---Ccee--------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 291 IGKMYEVVVTTY---RGFY--------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 291 ~G~~YeLVvTt~---~GLy--------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+.+||+|... .|.| -|+|||++++.. .-.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 298 ~g~~Gel~v~g~~~~~gY~~~~~~~~g~~~TGDl~~~d~----dG~l~~~GR~dd~I~~~G~~V~p~eIE~~l~~~ 369 (452)
T PRK07445 298 ANQTGNITIQAQSLALGYYPQILDSQGIFETDDLGYLDA----QGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369 (452)
T ss_pred CCCcceEEEeCCccchhhcCCccCCCCEEECCCEEEEcC----CCCEEEEeecCCEEEECCEEECHHHHHHHHHhC
Confidence 488899998543 2322 289999998732 346889999998 889999999999998853
No 101
>PRK05857 acyl-CoA synthetase; Validated
Probab=97.42 E-value=0.0053 Score=66.81 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=48.4
Q ss_pred ccccCCceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHH
Q 011497 287 SGVEIGKMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMS 347 (484)
Q Consensus 287 ~ele~G~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~ 347 (484)
.++..|+.+||+|+..+ |.| .|+|||+++... .-.+.|+||.++ +.|+|++..+|+.
T Consensus 367 ~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDlg~~d~----~g~l~~~GR~~~~ik~~G~~v~p~eIE~ 442 (540)
T PRK05857 367 GAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDGWVNTGDLLERRE----DGFFYIKGRSSEMIICGGVNIAPDEVDR 442 (540)
T ss_pred ccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCCceeccceEEEcC----CceEEEeccccccEecCCEEECHHHHHH
Confidence 34567889999998852 222 389999998732 347999999998 8899999999998
Q ss_pred HHHH
Q 011497 348 AMES 351 (484)
Q Consensus 348 av~~ 351 (484)
++..
T Consensus 443 ~l~~ 446 (540)
T PRK05857 443 IAEG 446 (540)
T ss_pred HHHh
Confidence 8874
No 102
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.42 E-value=0.0024 Score=65.50 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+|+|||++++ . .-.+.|+||.++ +.|+++++.+|+.++.+.
T Consensus 235 ~~~TGDl~~~-~----~g~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~ 278 (358)
T PRK07824 235 WFRTDDLGAL-D----DGVLTVLGRADDAISTGGLTVLPQVVEAALATH 278 (358)
T ss_pred ceecccEEEE-e----CCEEEEEeccCCeEEECCEEECHHHHHHHHHhC
Confidence 8999999998 2 237899999998 889999999999988753
No 103
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.42 E-value=0.0053 Score=66.69 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=42.8
Q ss_pred ceEEEEeccC---Ccee----------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 293 KMYEVVVTTY---RGFY----------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 293 ~~YeLVvTt~---~GLy----------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
+..||+++.. .|.| -|+|||+++... .-.+.|+||.++ +.|+|+++.+|++++..
T Consensus 383 ~~Gei~v~g~~~~~gy~~~~~~~~~~g~~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 453 (539)
T PRK07008 383 AFGDLQVRGPWVIDRYFRGDASPLVDGWFPTGDVATIDA----DGFMQITDRSKDVIKSGGEWISSIDIENVAVA 453 (539)
T ss_pred cceEEEEeCCccchhhcCChhhhhcCCCcccCceEEEcC----CCcEEEeecccCEEEeCCeEEcHHHHHHHHHh
Confidence 4578999863 2221 399999999843 236899999998 88999999999998875
No 104
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=97.41 E-value=0.0074 Score=66.14 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=34.4
Q ss_pred eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 308 YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 308 Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
|++||++++.. .-.+.|+||.++ +.|+++...+|+.++.+
T Consensus 432 ~~TGD~~~~~~----dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~ 474 (576)
T PRK05620 432 LRTGDVGSVTR----DGFLTIHDRARDVIRSGGEWIYSAQLENYIMA 474 (576)
T ss_pred EecCceEEEcC----CceEEEEechhhhhhcCCEEEcHHHHHHHHhc
Confidence 89999998743 237899999988 88999999999999975
No 105
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=97.41 E-value=0.0033 Score=66.81 Aligned_cols=59 Identities=22% Similarity=0.162 Sum_probs=47.8
Q ss_pred ccCCceEEEEeccCC---ce-------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTYR---GF-------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 289 le~G~~YeLVvTt~~---GL-------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+..|+..||++++.+ |. -.|++||+++... ...+.|.||.++ +.|++++..+|++++
T Consensus 327 ~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~~~----~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i 402 (483)
T PRK03640 327 VPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDE----EGFLYVLDRRSDLIISGGENIYPAEIEEVL 402 (483)
T ss_pred CCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEEcC----CCCEEEeecccCeEEeCCEEECHHHHHHHH
Confidence 568999999998853 21 1589999998853 235889999998 899999999999988
Q ss_pred HH
Q 011497 350 ES 351 (484)
Q Consensus 350 ~~ 351 (484)
.+
T Consensus 403 ~~ 404 (483)
T PRK03640 403 LS 404 (483)
T ss_pred Hh
Confidence 74
No 106
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=97.39 E-value=0.0052 Score=66.10 Aligned_cols=117 Identities=19% Similarity=0.073 Sum_probs=70.8
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCC--cceeccCCceEEEeeecCCcCcccCCCceeecccccCC
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT--TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIG 292 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~--~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G 292 (484)
..-+.++++.++ ++++ ..||+||+...+-......... ......++ .-.+.++.+ ++ ++..|
T Consensus 301 ~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~~i~d~~--------~~-----~~~~g 364 (517)
T PRK08008 301 DQEKDAFEERFG-VRLL-TSYGMTETIVGIIGDRPGDKRRWPSIGRPGFC-YEAEIRDDH--------NR-----PLPAG 364 (517)
T ss_pred HHHHHHHHHHhC-CeEE-eeccccccccccccCCccccccCCccccCCCC-cEEEEECCC--------CC-----CCCCC
Confidence 334455666665 8888 9999999743221110000000 00111122 223444321 22 34579
Q ss_pred ceEEEEeccCC--cee------------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 293 KMYEVVVTTYR--GFY------------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 293 ~~YeLVvTt~~--GLy------------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+.+||+++... ++. -|+|||+.++.. .-.+.|+||.++ +.|++++..+|+.++
T Consensus 365 ~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l 440 (517)
T PRK08008 365 EIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE----EGFFYFVDRRCNMIKRGGENVSCVELENII 440 (517)
T ss_pred CcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccceEEECC----CCcEEEeecccceEEeCCEEECHHHHHHHH
Confidence 99999998531 111 389999887743 347899999998 789999999999888
Q ss_pred HH
Q 011497 350 ES 351 (484)
Q Consensus 350 ~~ 351 (484)
.+
T Consensus 441 ~~ 442 (517)
T PRK08008 441 AT 442 (517)
T ss_pred Hh
Confidence 64
No 107
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=97.39 E-value=0.0049 Score=64.54 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred ceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 293 KMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 293 ~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
+.+||++++.. |.| .|++||+++... ...+.|+||.++ +.|++++..+|++++.+
T Consensus 291 ~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~----dg~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~ 364 (436)
T TIGR01923 291 GHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDG----EGFLYVLGRRDDLIISGGENIYPEEIETVLYQ 364 (436)
T ss_pred CceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcC----CCCEEEeccccCeEEeCCEeeCHHHHHHHHHh
Confidence 56899998753 222 299999999854 247899999998 88999999999998875
No 108
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=97.33 E-value=0.0054 Score=69.36 Aligned_cols=42 Identities=24% Similarity=0.225 Sum_probs=35.4
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+|||+.++.. .-.+.|+||.++ +.|+++++.+|++++.+.
T Consensus 592 w~~TGDlg~~d~----dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~ 636 (718)
T PRK08043 592 WYDTGDIVRFDE----QGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGV 636 (718)
T ss_pred eEecCCEEEEcC----CCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhC
Confidence 599999999843 236889999998 889999999999988754
No 109
>PLN03052 acetate--CoA ligase; Provisional
Probab=97.32 E-value=0.014 Score=66.50 Aligned_cols=42 Identities=17% Similarity=-0.015 Sum_probs=35.2
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
-|++||+++++.- =.+.|+||.|+ +.|+++...+|+++|...
T Consensus 590 ~~~tGDl~~~d~d----G~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~ 634 (728)
T PLN03052 590 LRRHGDIFERTSG----GYYRAHGRADDTMNLGGIKVSSVEIERVCNAA 634 (728)
T ss_pred EEecCceEEECCC----CeEEEEecCCCEEeeCCEEeCHHHHHHHHHhc
Confidence 3899999998532 26899999998 889999999999988643
No 110
>PRK05691 peptide synthase; Validated
Probab=97.31 E-value=0.0035 Score=83.88 Aligned_cols=131 Identities=12% Similarity=0.086 Sum_probs=81.7
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC-CCCC--CcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA-QPPQ--TTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~-~~~~--~~~~~l~~~~~ffEFip~~~ 273 (484)
.|.|+.| ..|| .....+++.+.+++++++ +.||.||+.+....... ..+. .......++.. ...++.+
T Consensus 1387 ~~~lr~~---~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~~- 1460 (4334)
T PRK05691 1387 CTSLRRL---FSGGEALPAELRNRVLQRLPQVQLH-NRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVL-CRVLDAE- 1460 (4334)
T ss_pred CCcccEE---EEeecCCCHHHHHHHHHhCCCcEEE-eCCCcChheeeeeeeecccccCCCCcccceeCCCE-EEEECCC-
Confidence 4677754 4444 244456667777889999 99999998654321110 0000 01111222322 2233311
Q ss_pred cCcccCCCceeecccccCCceEEEEeccCC------------------------ceeeeeeCCEEEEeeeeCCCcEEEEe
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTYR------------------------GFYRYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~~------------------------GLyRYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
.+. +.+|+.+||+|...+ |---|||||+++... .-.+.|+
T Consensus 1461 -------~~~-----vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~yrTGDl~~~~~----dG~l~~~ 1524 (4334)
T PRK05691 1461 -------LNL-----LPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARLYRTGDRARWNA----DGALEYL 1524 (4334)
T ss_pred -------CCC-----CCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceEEEccceEEECC----CCCEEEe
Confidence 222 458999999996431 112489999999843 2479999
Q ss_pred eeCCC---cceeecCHHHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
||.|+ ++|.++...+|+.+|.+.
T Consensus 1525 GR~d~qiki~G~rie~~eIE~~l~~~ 1550 (4334)
T PRK05691 1525 GRLDQQVKLRGFRVEPEEIQARLLAQ 1550 (4334)
T ss_pred cccCcEEEECCEEcCHHHHHHHHHhC
Confidence 99998 999999999999988753
No 111
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.31 E-value=0.0055 Score=72.78 Aligned_cols=42 Identities=24% Similarity=0.266 Sum_probs=36.3
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+|+|||+++... .-.+.|+||.|+ +.|+++++.+|++++.+.
T Consensus 1011 ~~~TGDl~~~d~----dG~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~ 1055 (1140)
T PRK06814 1011 WYDTGDIVTIDE----EGFITIKGRAKRFAKIAGEMISLAAVEELAAEL 1055 (1140)
T ss_pred eEecCCEEEECC----CCeEEEEecccCeeeeCCEEECHHHHHHHHHhc
Confidence 799999999843 347899999998 889999999999988754
No 112
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=97.29 E-value=0.0075 Score=65.50 Aligned_cols=127 Identities=13% Similarity=0.101 Sum_probs=75.2
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeE-EeecCCCCCCCC-c-ceeccCCceEEEeeecCCc
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPPQT-T-RFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~~~~-~-~~~l~~~~~ffEFip~~~~ 274 (484)
|+++.+ ..||. ......++.. +++++ ..||+||+.. ++.....+.... + .....+ ...++.++.+
T Consensus 302 ~~lr~i---~~gG~~~~~~~~~~~~~~--~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~-~~~~~i~d~~-- 372 (547)
T PRK06087 302 SALRFF---LCGGTTIPKKVARECQQR--GIKLL-SVYGSTESSPHAVVNLDDPLSRFMHTDGYAAA-GVEIKVVDEA-- 372 (547)
T ss_pred CCeEEE---EEcCCCCCHHHHHHHHHc--CCcEE-EEecccccCCccccCCCcchhhcCCcCCccCC-CceEEEEcCC--
Confidence 566644 44442 2333344443 58999 9999999632 221111110000 0 111222 2345555422
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+. ++..|+..||++.... |. .-|+|||++++.. ...+.|+||.++
T Consensus 373 ------~~-----~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~~~~----~g~l~i~GR~~d~i~ 437 (547)
T PRK06087 373 ------RK-----TLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDE----AGYIKITGRKKDIIV 437 (547)
T ss_pred ------CC-----CCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEEECC----CCCEEEEecchhhhh
Confidence 22 2457888999885532 11 1389999999843 346889999998
Q ss_pred cceeecCHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~ 351 (484)
+.|++++..+|+++|.+
T Consensus 438 ~~G~~v~p~~iE~~l~~ 454 (547)
T PRK06087 438 RGGENISSREVEDILLQ 454 (547)
T ss_pred cCCEEECHHHHHHHHHh
Confidence 88999999999999975
No 113
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=97.26 E-value=0.01 Score=64.50 Aligned_cols=55 Identities=20% Similarity=0.200 Sum_probs=41.9
Q ss_pred ceEEEEeccC---Ccee-----------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 293 KMYEVVVTTY---RGFY-----------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 293 ~~YeLVvTt~---~GLy-----------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
...||++... .|.| .|++||++++.. .=.+.|+||.++ +.|+|++..+|+.++.+
T Consensus 383 ~~Gel~i~g~~~~~gy~~~~~~~~~~~~~~~TGDl~~~~~----~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 454 (542)
T PRK06018 383 TFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGDVATIDA----YGYMRITDRSKDVIKSGGEWISSIDLENLAVG 454 (542)
T ss_pred ceeEEEEecCCcchhhhcCcccEecCCcEEEcCCEEEEcC----CccEEEEecCCCeEEECCEEECHHHHHHHHHh
Confidence 4678888632 2333 399999988732 226899999998 88999999999988875
No 114
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=97.18 E-value=0.0094 Score=65.19 Aligned_cols=131 Identities=16% Similarity=0.196 Sum_probs=86.5
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCce--eEEeecCCCC-CCCCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASEC--YVGINLDIAQ-PPQTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg--~~~i~~~~~~-~~~~~~~~l~~~~~ffEFip~~~~ 274 (484)
.|.++.+. ++|+ ...-..++++.+|...+. .+||-||. .+.++.+... .++.... +.+ ..-=.|..++
T Consensus 298 l~sl~~v~--~gga~~~~~~~~~~~~~l~~~~v~-q~YGmTE~~~~~~~~~~~~e~k~~svG~-~~~--g~~~~v~~e~- 370 (537)
T KOG1176|consen 298 LSSLRSVL--SGGAPLSPATLEKVKERLPNVTVI-QGYGMTEAGGLITSNDWGPERKPGSVGR-LLP--GVRVKVLDET- 370 (537)
T ss_pred CCccEEEE--ecCCCCCHHHHHHHHHhCCCceEE-EeeccccccCceeecCCCccCcccccCc-ccc--ceEEEeeCCC-
Confidence 46666443 3333 456667888888967777 99999996 4567766552 2322333 233 1122233332
Q ss_pred CcccCCCceeecccccCCceEEEEeccC---Cce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
+.. +-+++.+||.+=.. .|- -=|+|||+ |+.+.-=.+.+++|.++
T Consensus 371 ------g~~-----l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDi----Gy~D~DG~l~IvdR~KdlIk 435 (537)
T KOG1176|consen 371 ------GVS-----LGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDL----GYFDEDGYLYIVDRSKDLIK 435 (537)
T ss_pred ------CCC-----CCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCce----EEEcCCCeEEEecchhhhee
Confidence 333 33788899999554 442 34899999 44445668999999999
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
..|+++.+.+|+++|.+-
T Consensus 436 ~~G~qv~P~EiE~vL~~h 453 (537)
T KOG1176|consen 436 YGGEQVSPAEIEAVLLTH 453 (537)
T ss_pred eCCEEeCHHHHHHHHHhC
Confidence 788999999999988853
No 115
>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]
Probab=97.13 E-value=0.023 Score=61.28 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=131.8
Q ss_pred EEecCchhhhHHHHHHHhCCCCccccccccCceeEEe-ecCCCCCCCCccee-ccCCceEEEeeecCCc--Cc-ccCCCc
Q 011497 208 CVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGI-NLDIAQPPQTTRFV-MLPTAAYFEFLPFDME--KN-EAVGEE 282 (484)
Q Consensus 208 ~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i-~~~~~~~~~~~~~~-l~~~~~ffEFip~~~~--~~-~~~~~~ 282 (484)
+|-.|-=...++++.+.||...+- +.||||||-+++ |.+...-. -+-+- +.....=|+.|-.|.. |. -++++-
T Consensus 362 a~GNGLR~diW~~Fv~RFg~~~Ig-E~YgaTEgn~~~~N~d~~vGA-~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~ 439 (649)
T KOG1179|consen 362 AYGNGLRPDIWQQFVKRFGIIKIG-EFYGATEGNSNLVNYDGRVGA-CGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGL 439 (649)
T ss_pred EecCCCCchHHHHHHHHcCCCeEE-EEeccccCcceeeeecCcccc-ccchhhhhhhccceEEEEecCCCCceeecCCce
Confidence 444444455556677889955555 999999997754 66543211 01110 1111222677766543 11 123333
Q ss_pred eeecccccCCceEEEEecc--------CC--------------------ceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 283 TVDFSGVEIGKMYEVVVTT--------YR--------------------GFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 283 ~l~l~ele~G~~YeLVvTt--------~~--------------------GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
-+. +++||.+.||=.- +- |.-=|++||++.... ---+-|..|.+|
T Consensus 440 Ci~---~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~~t~kKl~rDVFkkGD~~f~tGDlLv~D~----~GylYF~DRtGD 512 (649)
T KOG1179|consen 440 CIP---CPPGEPGLLVGKIVQKNPLRSFLGYAGPKKATEKKLLRDVFKKGDVYFNTGDLLVADE----LGYLYFKDRTGD 512 (649)
T ss_pred EEE---CCCCCCceEEEEeccCCchhhhccccCchhhhhhhhHHhhhccCcEEEeeCcEEEEec----CCcEEEeccCCC
Confidence 333 5688888665221 11 223499999998754 346789999999
Q ss_pred ---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEe-ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHH
Q 011497 335 ---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGY-TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDA 410 (484)
Q Consensus 335 ---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~-~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~ 410 (484)
=+||+++-.+|++.+..... + .. +.-|-|. ++.++..+-=.+. ...+ ..-+++.+...+...
T Consensus 513 TFRWKGENVsTtEVe~~l~~~~~-~---~d--v~VYGV~VP~~EGRaGMAaI~--~~p~------~~~d~~~l~~~l~~~ 578 (649)
T KOG1179|consen 513 TFRWKGENVSTTEVEDVLSALDF-L---QD--VNVYGVTVPGYEGRAGMAAIV--LDPT------TEKDLEKLYQHLREN 578 (649)
T ss_pred ceeecCCcccHHHHHHHHhhhcc-c---cc--eeEEEEecCCccCccceEEEE--ecCc------ccchHHHHHHHHHhh
Confidence 88999999999888875432 1 11 2223332 2334433322232 2211 123455566667666
Q ss_pred hChhHHHhhhcCCCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccCCH
Q 011497 411 FGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNR 463 (484)
Q Consensus 411 Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~ 463 (484)
| |.|+.=|......-.+ .-|||..-....+..|-.+++++-|--+-|.
T Consensus 579 L-P~YA~P~FlRl~~~i~----~TgTFKl~K~~L~~egf~p~~~~dply~~~~ 626 (649)
T KOG1179|consen 579 L-PSYARPRFLRLQDEIE----KTGTFKLQKTELQKEGFNPAIISDPLYYLDN 626 (649)
T ss_pred C-ccccchHHHHHHhhhh----cccchhhHHHHHHHccCCccccCCceEEEec
Confidence 6 6677666544333332 4699997777777779889999988764443
No 116
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=97.11 E-value=0.0011 Score=69.73 Aligned_cols=59 Identities=24% Similarity=0.378 Sum_probs=46.2
Q ss_pred ccCCceEEEEec---cCCceee--------------eeeCCEEEEeeeeCCCcEEEEeeeCCC--cce-eecCHHHHHHH
Q 011497 289 VEIGKMYEVVVT---TYRGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK--SSF-EIISERDLMSA 348 (484)
Q Consensus 289 le~G~~YeLVvT---t~~GLyR--------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~--i~g-Ekl~e~~v~~a 348 (484)
++.|..+||.+- |..|.|- |++||+-...- .-.++++||.++ ++| |++.+.+|++.
T Consensus 427 v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi~~m~e----nG~i~iVGRskdmI~rGGENVyP~ElE~f 502 (596)
T KOG1177|consen 427 VPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDIAVMDE----NGTIEIVGRSKDMIIRGGENVYPTELEDF 502 (596)
T ss_pred cccCCCceEEEEechhheeecCCcccchhhcccccceecCceEEEcC----CCcEEEEEcccCeEEeCCcccChHHHHHH
Confidence 557777999884 4455554 99999988743 347899999999 655 99999999887
Q ss_pred HHH
Q 011497 349 MES 351 (484)
Q Consensus 349 v~~ 351 (484)
+.+
T Consensus 503 L~~ 505 (596)
T KOG1177|consen 503 LNK 505 (596)
T ss_pred Hhh
Confidence 774
No 117
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=97.09 E-value=0.0028 Score=71.03 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=44.0
Q ss_pred CCceEEEEeccC---Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---c-ceeecCHHHHHHHHH
Q 011497 291 IGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLMSAME 350 (484)
Q Consensus 291 ~G~~YeLVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i-~gEkl~e~~v~~av~ 350 (484)
.+..+||.|... .|-|. |+|||++++.. .=.+.|+||.++ + .||++++.+|++++.
T Consensus 462 ~~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~----dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~ 537 (660)
T PLN02861 462 DVPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQP----NGAMKIIDRKKNIFKLSQGEYVAVENLENTYS 537 (660)
T ss_pred CCCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECC----CCcEEEEeccccceEcCCCeEEcHHHHHHHHh
Confidence 455789988653 44442 99999999853 237899999999 3 489999999998887
Q ss_pred H
Q 011497 351 S 351 (484)
Q Consensus 351 ~ 351 (484)
+
T Consensus 538 ~ 538 (660)
T PLN02861 538 R 538 (660)
T ss_pred c
Confidence 4
No 118
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=96.96 E-value=0.0076 Score=68.71 Aligned_cols=129 Identities=15% Similarity=0.213 Sum_probs=72.4
Q ss_pred CCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeE--EeecCCCCCCCCcceeccCCceEEEeeecCCcC
Q 011497 201 PNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 201 P~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
++|+++ .+||. ....+.++..+| ++++ .+||.||+.. .++......++.....+.|+. -+..++.++.
T Consensus 461 ~~lr~~---~sGGapl~~~~~~~~~~~~g-~~i~-~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~-e~ki~d~~~~- 533 (746)
T PTZ00342 461 PNLEVI---LNGGGKLSPKIAEELSVLLN-VNYY-QGYGLTETTGPIFVQHADDNNTESIGGPISPNT-KYKVRTWETY- 533 (746)
T ss_pred CCeEEE---EEcCCCCCHHHHHHHHHhcC-CCEE-EeeccCcccceeeeccCCCCCcccccCcCCCcE-EEEEeccccc-
Confidence 677643 55553 333344555555 8888 9999999743 222111111111111111222 2233332211
Q ss_pred cccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-c--
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-S-- 335 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~-i-- 335 (484)
.. ...+..+||+|... .|-| -|+|||++++.. .-.+.|+||.++ |
T Consensus 534 ------~~-----~~~~~~GEl~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~----dG~l~i~gR~kdlIkl 598 (746)
T PTZ00342 534 ------KA-----TDTLPKGELLIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINK----NGSLTFLDRSKGLVKL 598 (746)
T ss_pred ------cc-----CCCCCceEEEEecCcccccccCChhhhhhhcCcCCcccCCcEEEECC----CCeEEEEccCCCeEEe
Confidence 00 11234578887542 3322 299999999842 237999999999 3
Q ss_pred -ceeecCHHHHHHHHHH
Q 011497 336 -SFEIISERDLMSAMES 351 (484)
Q Consensus 336 -~gEkl~e~~v~~av~~ 351 (484)
.||++++.+|++++.+
T Consensus 599 s~Ge~I~p~eIE~~l~~ 615 (746)
T PTZ00342 599 SQGEYIETDMLNNLYSQ 615 (746)
T ss_pred CCCEEEchHHHHHHHhc
Confidence 3899999999988875
No 119
>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B.
Probab=96.94 E-value=0.0011 Score=55.81 Aligned_cols=84 Identities=23% Similarity=0.371 Sum_probs=53.4
Q ss_pred eeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHH
Q 011497 337 FEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYK 416 (484)
Q Consensus 337 gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~ 416 (484)
|.++++.+|+++|.+.. ++. .+|.++.+..+......+.+|...+ ...+....++++++|.++|
T Consensus 1 GvnvfP~~Ie~vl~~~~-------~~~-~~y~i~v~~~~~~D~l~v~vE~~~~---~~~~~~~~~~l~~~i~~~l----- 64 (96)
T PF14535_consen 1 GVNVFPSQIEEVLREFP-------EVS-PEYQIVVTREGGLDELTVRVELRPG---FSDDAEDLEALAERIAERL----- 64 (96)
T ss_dssp TEEE-HHHHHHHHCTST-------TEE-EEEEEEEEEETTEEEEEEEEEESTT---CCTTHHHHHHHHHHHHHHH-----
T ss_pred CcEECHHHHHHHHHhCc-------CCC-CcEEEEEEcCCCCcEEEEEEEECCc---cCcchHHHHHHHHHHHHHH-----
Confidence 67899999999998652 221 2788777643345566788998754 1122356677888888888
Q ss_pred HhhhcCCCCCcEEEEeCCChHHH
Q 011497 417 VQRDRGEISPLSVSIVKPGTFDR 439 (484)
Q Consensus 417 ~~R~~g~l~p~~v~~v~~gtf~~ 439 (484)
|+.-.+.| +|.+|++|++++
T Consensus 65 --k~~lgv~~-~V~lv~~gtLpr 84 (96)
T PF14535_consen 65 --KERLGVRP-EVELVPPGTLPR 84 (96)
T ss_dssp --HHHHSS-E-EEEEE-TT-S--
T ss_pred --HhhcCceE-EEEEECCCCccC
Confidence 54334554 999999999997
No 120
>PRK08162 acyl-CoA synthetase; Validated
Probab=96.82 E-value=0.042 Score=59.52 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=44.2
Q ss_pred ceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 293 KMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 293 ~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+.+||+|+.. .|.| .|+|||++++.. .-.+.|+||.++ +.|++++..+|+.+|.+.
T Consensus 387 ~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~d~----dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~ 461 (545)
T PRK08162 387 TIGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHP----DGYIKIKDRSKDIIISGGENISSIEVEDVLYRH 461 (545)
T ss_pred ceeEEEEecCcchhhhcCChhhhHHHhhCCCcccCceEEEcC----CccEEEEecccceEEeCCEEECHHHHHHHHHhC
Confidence 3589999874 2322 489999998853 247899999998 889999999999988753
No 121
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=96.70 E-value=0.01 Score=66.68 Aligned_cols=58 Identities=17% Similarity=0.221 Sum_probs=44.2
Q ss_pred cCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c-ceeecCHHHHHHHH
Q 011497 290 EIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLMSAM 349 (484)
Q Consensus 290 e~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i-~gEkl~e~~v~~av 349 (484)
..|..+||+|... .|-| .|+|||+.++.. .-.+.|+||.++ + .||++++.+|+.++
T Consensus 461 ~~~~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~----dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l 536 (660)
T PLN02430 461 GEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILP----NGVLKIIDRKKNLIKLSQGEYVALEYLENVY 536 (660)
T ss_pred CCCCcceEEecCCCccccccCChHHhhhhhhccceeccceEEECC----CCcEEEEEcccccEEcCCCcEEchHHHHHHH
Confidence 3456789999764 3433 489999999843 236899999998 3 48999999999887
Q ss_pred HH
Q 011497 350 ES 351 (484)
Q Consensus 350 ~~ 351 (484)
.+
T Consensus 537 ~~ 538 (660)
T PLN02430 537 GQ 538 (660)
T ss_pred hc
Confidence 64
No 122
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=96.57 E-value=0.01 Score=67.00 Aligned_cols=58 Identities=16% Similarity=0.233 Sum_probs=43.8
Q ss_pred cCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC----cceeecCHHHHHHH
Q 011497 290 EIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDLMSA 348 (484)
Q Consensus 290 e~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~----i~gEkl~e~~v~~a 348 (484)
.+|..+||.|... .|-| -|||||+.++.. .-.+.|+||.++ +.|+++.+.+|+.+
T Consensus 503 ~~~~~GEL~vrG~~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~----dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~ 578 (700)
T PTZ00216 503 TPEPRGEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAA----NGTLRIIGRVKALAKNCLGEYIALEALEAL 578 (700)
T ss_pred CCCCCceEEEcCCcccchhcCChhHhhhhccccCCeeccceEEEcC----CCcEEEEEehHhheecCCCceeccHHHHHH
Confidence 3455678888653 2322 389999999843 236999999988 46899999999988
Q ss_pred HHH
Q 011497 349 MES 351 (484)
Q Consensus 349 v~~ 351 (484)
+.+
T Consensus 579 l~~ 581 (700)
T PTZ00216 579 YGQ 581 (700)
T ss_pred Hhc
Confidence 875
No 123
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=96.46 E-value=0.047 Score=57.86 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=35.2
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+|||+.++. .=.+.|+||.++ +.|+|+++.+|+++|.+.
T Consensus 333 ~~~TGD~~~~~-----~g~l~~~gR~~d~i~~~G~~v~p~eiE~~l~~~ 376 (458)
T PRK09029 333 WFATRDRGEWQ-----NGELTILGRLDNLFFSGGEGIQPEEIERVINQH 376 (458)
T ss_pred ccCCCCcEEEe-----CCEEEEecccccceeeCCEEeCHHHHHHHHhcC
Confidence 68999999985 125899999998 889999999999988853
No 124
>PRK12582 acyl-CoA synthetase; Provisional
Probab=96.31 E-value=0.019 Score=63.77 Aligned_cols=56 Identities=30% Similarity=0.370 Sum_probs=39.0
Q ss_pred CCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c-ceeecCHHHHH
Q 011497 291 IGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S-SFEIISERDLM 346 (484)
Q Consensus 291 ~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i-~gEkl~e~~v~ 346 (484)
.|+.+||+|... .|.| .|+|||+.++.+-....-.+.|+||.++ + .|+|+....++
T Consensus 420 ~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE 496 (624)
T PRK12582 420 VGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVDPDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLR 496 (624)
T ss_pred CCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecCCcCCCCceEEeccchhhEecCCCcEechHHHH
Confidence 577888888553 3333 2999999998532112236889999987 3 48999987774
No 125
>PLN02479 acetate-CoA ligase
Probab=95.96 E-value=0.039 Score=60.38 Aligned_cols=55 Identities=22% Similarity=0.234 Sum_probs=43.5
Q ss_pred ceEEEEeccCC---cee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 293 KMYEVVVTTYR---GFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 293 ~~YeLVvTt~~---GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
+.+||+++..+ |.| .|+|||++++.. .-.+.|+||.++ +.|++++..+|+.++.+
T Consensus 401 ~~GEl~v~g~~~~~GY~~~~~~t~~~~~~g~~~TGDl~~~~~----~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~ 474 (567)
T PLN02479 401 TMGEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHP----DGYIEIKDRSKDIIISGGENISSLEVENVVYT 474 (567)
T ss_pred CceEEEEeccchhhhhhcCcccccchhcCCceecceeEEEcC----CccEEEeccccceEEeCCEEEcHHHHHHHHHh
Confidence 56899998631 222 599999998732 347899999998 88999999999998875
No 126
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.91 E-value=0.02 Score=59.50 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=78.2
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCC----cceeccCCceEEEeeecCCcCcccCCCceeeccccc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQT----TRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 290 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~----~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele 290 (484)
..-+.++...+| +.++ -.+|-.||.+.+.-- +.+++. ....+.|+. |..=++. ++++ |.
T Consensus 319 ~~~Arrv~~~lg-C~LQ-QVFGMAEGLvnyTRL-DDp~E~i~~TQGrPlsP~D---EvrvvD~------dg~p-----v~ 381 (542)
T COG1021 319 ATLARRVPAVLG-CQLQ-QVFGMAEGLVNYTRL-DDPPEIIIHTQGRPLSPDD---EVRVVDA------DGNP-----VA 381 (542)
T ss_pred HHHHhhchhhhC-chHH-HHhhhhhhhhccccc-CCchHheeecCCCcCCCcc---eeEEecC------CCCC-----CC
Confidence 445567777777 8888 889999998866311 122221 112233332 2222222 2343 45
Q ss_pred CCceEEEEec---cCCceee--------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHH
Q 011497 291 IGKMYEVVVT---TYRGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAME 350 (484)
Q Consensus 291 ~G~~YeLVvT---t~~GLyR--------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~ 350 (484)
+||.++|..- |..|-|| ||+||+|+.+. .--+...||.++ =.|||+--++|++.+.
T Consensus 382 pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~~~----dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL 457 (542)
T COG1021 382 PGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRRDP----DGYLVVEGRVKDQINRGGEKIAAEEVENLLL 457 (542)
T ss_pred CCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEecC----CceEEEEeeehhhhccccchhhHHHHHHHHh
Confidence 9999999874 5588888 99999999954 337899999998 4479999999998877
Q ss_pred HH
Q 011497 351 SF 352 (484)
Q Consensus 351 ~~ 352 (484)
+-
T Consensus 458 ~H 459 (542)
T COG1021 458 RH 459 (542)
T ss_pred hC
Confidence 54
No 127
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=95.19 E-value=0.088 Score=55.37 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=35.4
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|++||+.++. ..-.+.|+||.++ +.|+|+++.+|++++.+.
T Consensus 276 ~~~tgD~g~~d----~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~ 320 (386)
T TIGR02372 276 RLDLQDRLAWD----KDGGFTILGRKDEILQVGGVNVSPGHVRDILERN 320 (386)
T ss_pred eeecCceEEEc----CCCcEEEecccCCEEEECCEEEcHHHHHHHHHcC
Confidence 37899998773 3458999999998 889999999999988853
No 128
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=94.34 E-value=0.37 Score=50.37 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=62.2
Q ss_pred hhhHHHHHHHhCC---CCccccccccCceeE-EeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeeccccc
Q 011497 215 SQYCSKIKYYAGE---VPVLGGDYFASECYV-GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVE 290 (484)
Q Consensus 215 ~~y~~~l~~~~g~---v~~~~~~y~aSEg~~-~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele 290 (484)
..+.+.+++.+|- -.++ ..||.||... .+ ++ +.+.+..+|. .. |- + +.+ +..|.
T Consensus 242 ~ef~~~l~~~~Gv~~~~~i~-~~ygmtEl~s~~~--~~----~~~~~~~p~w-V~---iR-D--------p~t--l~~~~ 299 (365)
T PF04443_consen 242 EEFYARLQEVFGVIPIENIY-DMYGMTELNSQAY--EC----GHGHFHVPPW-VI---IR-D--------PET--LEPLP 299 (365)
T ss_pred HHHHHHHHHHHCCCCHHHee-eeeeccccchhhe--eC----CCCcccCCCe-EE---EE-C--------CCC--CcCCC
Confidence 4566778888873 3677 8999999542 22 21 1123322222 11 11 1 222 34577
Q ss_pred CCceEEEEeccC-----CceeeeeeCCEEEEeeeeCC-----CcEEEEeeeCCC--cceeecC
Q 011497 291 IGKMYEVVVTTY-----RGFYRYRLGDIVKVVDFYNS-----SPQVEFVMRAPK--SSFEIIS 341 (484)
Q Consensus 291 ~G~~YeLVvTt~-----~GLyRYr~GDvV~v~g~~~~-----~P~i~F~gR~~~--i~gEkl~ 341 (484)
.|+.+-|.+=+. .|. =-|.|+-.+.+ .+. .+.|+++||.+. ++|-.++
T Consensus 300 ~Ge~Gli~vidl~~~s~p~~--IlTeDlGvl~~-~~~c~cr~g~~f~vlGR~~~ae~RGCs~~ 359 (365)
T PF04443_consen 300 PGETGLIQVIDLANTSYPGF--ILTEDLGVLHG-DDDCGCRKGKYFEVLGRADGAEIRGCSLT 359 (365)
T ss_pred CCCeeEEEEEcccccCCCcE--EEEcceeeecC-CCCCCCccCCEEEEEeCCCCCccCCcHHH
Confidence 899998877555 233 45999996655 322 358999999998 8885543
No 129
>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]
Probab=93.17 E-value=0.5 Score=52.73 Aligned_cols=133 Identities=18% Similarity=0.155 Sum_probs=79.2
Q ss_pred cccCCCCceEEEEecCchhhhHHHHH--HHhCCCCccccccccCceeEEeecC-CCCC-CCCcceeccCCceEEEeeecC
Q 011497 197 SKLWPNVRYIKCVTTGSMSQYCSKIK--YYAGEVPVLGGDYFASECYVGINLD-IAQP-PQTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 197 ~~lWP~L~~i~~~~~G~~~~y~~~l~--~~~g~v~~~~~~y~aSEg~~~i~~~-~~~~-~~~~~~~l~~~~~ffEFip~~ 272 (484)
..||+|.+++ .+|++..-..-++ ....++.++ ++||-||+..|..+. +.+. .+...- ..|. +-.=+++++
T Consensus 415 ~~LGg~vr~~---~sGaAPls~ev~~F~r~~~g~~v~-eGYGlTEts~g~~~~~~~d~~lgsvG~-p~p~-~~vKL~dvp 488 (691)
T KOG1256|consen 415 QSLGGNVRLI---ISGAAPLSPEVLTFFRAALGCRVL-EGYGLTETSAGTTLTLPGDNVLGSVGP-PVPG-NEVKLVDVP 488 (691)
T ss_pred HHhcCceeEE---EecCCCCCHHHHHHHHHhcCceee-ecccccccCCceEeccCCCCCCCCcCC-cccC-ceEEEechH
Confidence 4678888744 7776332222222 223459999 999999987433222 1111 111111 1222 234455554
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
+.+ . --.|..+||-|=-. .|-| -.+|||+=++.. .=.+.+.+|.++
T Consensus 489 e~n---y---------~a~~~~GEIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p----~G~l~IidRkK~i 552 (691)
T KOG1256|consen 489 EMN---Y---------DADGSKGEICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDP----NGTLKIIDRKKNI 552 (691)
T ss_pred HhC---c---------CcCCCcceEEEecchhceeccCChHHHhhhhccccccccccceeECC----CccEEEEecccce
Confidence 431 1 11355677777332 4433 379999999854 348999999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 011497 335 ---SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 ---i~gEkl~e~~v~~av~~ 351 (484)
-.||.+.++.++++..+
T Consensus 553 fklaqGEyVaPe~IEniy~~ 572 (691)
T KOG1256|consen 553 FKLAQGEYVAPEKIENIYKR 572 (691)
T ss_pred EEcCCCCccChHHHHHHHhc
Confidence 45699999999988876
No 130
>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=90.10 E-value=2.9 Score=45.66 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=81.9
Q ss_pred ecCchhhhH--HHHHHHhCCCCccccccccCceeE-EeecCCCCCCCCcceeccCCceEEEeeecCCcC--c--ccCCCc
Q 011497 210 TTGSMSQYC--SKIKYYAGEVPVLGGDYFASECYV-GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK--N--EAVGEE 282 (484)
Q Consensus 210 ~~G~~~~y~--~~l~~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~--~--~~~~~~ 282 (484)
.+||+..-. +++-..+=.+|+. -|||-||..- |.-.++++..-.....+. ..+++-.++.++.. . +-++++
T Consensus 408 LsGGapLS~dtQrF~nic~C~Pv~-qGYGLTEtca~~tv~e~~d~~~g~vG~pl-~c~eiKLvdw~EgGY~~~~~PPrGE 485 (678)
T KOG1180|consen 408 LSGGAPLSPDTQRFMNICFCCPVL-QGYGLTETCAAATVLEPEDFSTGRVGAPL-PCCEIKLVDWEEGGYFAKNKPPRGE 485 (678)
T ss_pred EeCCCCCCHHHHHHHHHhcccccc-ccccccchhcccEecChhhcccccccCCc-cceEEEEEEhhhcCccCCCCCCCce
Confidence 677654433 3333333226888 9999999544 433344332210111111 34567777776541 0 112222
Q ss_pred ee------ecccccCCceEEEEeccCCceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC----cceeecCHHHHHHHHHHH
Q 011497 283 TV------DFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK----SSFEIISERDLMSAMESF 352 (484)
Q Consensus 283 ~l------~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~----i~gEkl~e~~v~~av~~~ 352 (484)
++ .+.=.+.-++=--.+|...|---|+||||.+++- --++++..|.++ .+||-++=.-|+.|+..-
T Consensus 486 I~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~p----dG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~ 561 (678)
T KOG1180|consen 486 ILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHP----DGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSS 561 (678)
T ss_pred EEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecC----CCcEEEeechhhhhhhcccceeehHHHHHHHhcC
Confidence 22 1111111111111223345655799999999932 238999999998 889999988887777642
Q ss_pred HHHhccccCceEEEEEEeecCC
Q 011497 353 QMMLRNVMAVEIVEFAGYTNLE 374 (484)
Q Consensus 353 ~~~~~~~~g~~l~~f~~~~~~~ 374 (484)
+ -+-+-|+++|..
T Consensus 562 -p--------~V~NICvyAd~~ 574 (678)
T KOG1180|consen 562 -P--------YVDNICVYADSN 574 (678)
T ss_pred -c--------chhheEEecccc
Confidence 1 233578888853
No 131
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.61 E-value=4.5 Score=44.89 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=41.5
Q ss_pred cCCceEEEEeccC---Cce------------e--eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 290 EIGKMYEVVVTTY---RGF------------Y--RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 290 e~G~~YeLVvTt~---~GL------------y--RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
..|...|+.|+.. -|. . -|++||+++. ...=.++|+||.|. ++|..+-..+++.++
T Consensus 563 p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~~r~----~~dg~~e~lgr~D~qvki~g~Riel~eie~~l 638 (642)
T COG1020 563 PLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARP----LADGALEYLGRKDSQVKIRGFRIELGEIEAAL 638 (642)
T ss_pred CCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCeeeE----CCCCeEEEeccccceeEeceEecCcHHHHHHH
Confidence 3677788888775 221 1 4999999993 12348999999886 889999777776655
Q ss_pred H
Q 011497 350 E 350 (484)
Q Consensus 350 ~ 350 (484)
.
T Consensus 639 ~ 639 (642)
T COG1020 639 A 639 (642)
T ss_pred h
Confidence 4
No 132
>PRK09188 serine/threonine protein kinase; Provisional
Probab=81.47 E-value=8.8 Score=40.18 Aligned_cols=40 Identities=10% Similarity=-0.057 Sum_probs=31.6
Q ss_pred eeeeCCEEEEeeeeCCCcEEEEeeeCCCcce---eecCHHHHHHHHHHH
Q 011497 307 RYRLGDIVKVVDFYNSSPQVEFVMRAPKSSF---EIISERDLMSAMESF 352 (484)
Q Consensus 307 RYr~GDvV~v~g~~~~~P~i~F~gR~~~i~g---Ekl~e~~v~~av~~~ 352 (484)
-|+|||++++.+ ..-.+.|+||.+ .| |++++. |++++.+.
T Consensus 210 W~~TGDlg~~~d---~dG~l~~~gR~~--~G~~i~nV~p~-IE~~L~~h 252 (365)
T PRK09188 210 WLATGKKVYNFI---TRGLFSWSDGEG--TGDRIDNEAPA-IQAALKSD 252 (365)
T ss_pred EEeCCCEEEEEc---CCCeEEEEecCc--CCcCceeeCHH-HHHHHHhC
Confidence 589999998732 234599999999 56 899999 98887753
No 133
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=60.65 E-value=21 Score=28.00 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=37.6
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
++..|+.+++||.+|.++++...++++.+..+..+. +.-.+|.+-++..
T Consensus 13 ~~S~edAv~~Av~~A~kTl~ni~~~eV~e~~~~v~d-g~i~~y~v~lkv~ 61 (66)
T PF07311_consen 13 PKSWEDAVQNAVARASKTLRNIRWFEVKEQRGHVED-GKITEYQVNLKVS 61 (66)
T ss_dssp SSHHHHHHHHHHHHHHHHSSSEEEEEEEEEEEEEET-TCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHhhchhCcEEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 566699999999999998876678888888876654 3467888766653
No 134
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=58.58 E-value=4.1 Score=42.87 Aligned_cols=19 Identities=42% Similarity=0.551 Sum_probs=14.1
Q ss_pred CccCCCCCCCCccccccCch
Q 011497 1 MLSSSGTSSMKPKLIPYFDS 20 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~ 20 (484)
|-+|-||| |.||+||-|-.
T Consensus 194 fqLSGGTT-GtPKLIPRtH~ 212 (542)
T COG1021 194 FQLSGGTT-GTPKLIPRTHN 212 (542)
T ss_pred EEecCCCC-CCCcccccccc
Confidence 34566666 99999998765
No 135
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=55.70 E-value=9 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
+.||||| |+||-|..|.+.+.
T Consensus 101 ~~TSGTT-G~PKgV~~sh~~l~ 121 (386)
T TIGR02372 101 FATSGST-GTPKPVTHSWAALL 121 (386)
T ss_pred EECCCCC-CCCceeEeeHHHHH
Confidence 4699999 99999999987653
No 136
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=55.35 E-value=19 Score=32.54 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.9
Q ss_pred ccCCceEEEEeccC--Cceeee----eeCCEEEEeeeeCCCcEEEEeeeCC
Q 011497 289 VEIGKMYEVVVTTY--RGFYRY----RLGDIVKVVDFYNSSPQVEFVMRAP 333 (484)
Q Consensus 289 le~G~~YeLVvTt~--~GLyRY----r~GDvV~v~g~~~~~P~i~F~gR~~ 333 (484)
|.+|+.-+|.||.. +|-+++ ..+||=-|.+- -.|+|+|.+..-
T Consensus 47 Lp~gq~L~v~VtDvDLAG~~~P~~~~~~~dvRvvkdi--~pPRI~l~Y~L~ 95 (141)
T PF11454_consen 47 LPPGQTLEVTVTDVDLAGDVEPFWGSGANDVRVVKDI--YPPRIELSYTLT 95 (141)
T ss_pred CCCCCEEEEEEEecccCcccccCcCCCCCcEEEEccC--CCCcEEEEEEEE
Confidence 67999999999997 997665 56676666555 579999988865
No 137
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=54.04 E-value=7.6 Score=39.52 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 41 l~TSGTT-G~PKgv~~s~~~l 60 (358)
T PRK07824 41 VATSGTT-GTPKGAMLTAAAL 60 (358)
T ss_pred EeCCCCC-CCCCEEEecHHHH
Confidence 4699999 9999999998765
No 138
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=53.75 E-value=8.9 Score=40.82 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-+..|.+.+
T Consensus 126 ~~TSGTT-G~PKgV~~t~~~l 145 (452)
T PRK07445 126 IPTGGSS-GQIRFAIHTWETL 145 (452)
T ss_pred EeCCCCC-CCCcEEEechHHH
Confidence 3599999 9999999998754
No 139
>TIGR01923 menE O-succinylbenzoate-CoA ligase. This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
Probab=49.46 E-value=10 Score=39.44 Aligned_cols=20 Identities=35% Similarity=0.384 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||.|+.|.+.+
T Consensus 117 ~~TSGtT-G~PK~v~~s~~~~ 136 (436)
T TIGR01923 117 MFTSGTT-GKPKAVPHTFRNH 136 (436)
T ss_pred EeCCCCC-CCCcEEEEehHHH
Confidence 4799999 9999999988764
No 140
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=47.65 E-value=9.6 Score=39.36 Aligned_cols=22 Identities=36% Similarity=0.336 Sum_probs=18.5
Q ss_pred ccCCCCCCCCccccccCchHHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALSK 24 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~~ 24 (484)
..||||| |.||.|++|.+.+-.
T Consensus 161 ~~TSGTT-G~pK~v~~t~~~~~~ 182 (417)
T PF00501_consen 161 LFTSGTT-GKPKGVVLTHRNLLA 182 (417)
T ss_dssp EEESSSS-SSEEEEEEEHHHHHH
T ss_pred ecccccc-ccccccccccccccc
Confidence 3599999 999999999987643
No 141
>PRK07638 acyl-CoA synthetase; Validated
Probab=45.66 E-value=12 Score=39.86 Aligned_cols=20 Identities=25% Similarity=0.193 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-++.|.+.+
T Consensus 149 ~~TSGtT-G~PKgv~~s~~~~ 168 (487)
T PRK07638 149 GFTSGST-GKPKAFLRAQQSW 168 (487)
T ss_pred EeCCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999999865
No 142
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Probab=45.54 E-value=15 Score=40.03 Aligned_cols=21 Identities=38% Similarity=0.456 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 189 ~~TSGTT-G~PKgV~~th~~l~ 209 (539)
T PRK06334 189 LFTSGTE-KLPKGVPLTHANLL 209 (539)
T ss_pred EECCCCC-CCCCEEEEcHHHHH
Confidence 3699999 99999999988653
No 143
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=45.31 E-value=14 Score=40.02 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|.+|.+.+
T Consensus 214 ~~TSGTT-G~PK~v~~s~~~l 233 (560)
T PRK08751 214 QYTGGTT-GVAKGAMLTHRNL 233 (560)
T ss_pred EcCCCCC-CCCCEEEEccHHH
Confidence 3699999 9999999998865
No 144
>PRK07470 acyl-CoA synthetase; Validated
Probab=45.27 E-value=8.3 Score=41.47 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-++.|...+
T Consensus 169 ~~TSGTT-G~PK~v~~s~~~l 188 (528)
T PRK07470 169 FFTSGTT-GRPKAAVLTHGQM 188 (528)
T ss_pred EeCCCCC-CCCcEEEEehhhH
Confidence 4699999 9999999999865
No 145
>PRK09088 acyl-CoA synthetase; Validated
Probab=45.25 E-value=12 Score=39.71 Aligned_cols=20 Identities=40% Similarity=0.413 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-++.|.+.+
T Consensus 141 ~~TSGTT-G~PK~v~~s~~~l 160 (488)
T PRK09088 141 LFTSGTS-GQPKGVMLSERNL 160 (488)
T ss_pred EeCCCCC-CCCcEEEEehHHH
Confidence 4699999 9999999998765
No 146
>TIGR01733 AA-adenyl-dom amino acid adenylation domain. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
Probab=44.68 E-value=13 Score=38.12 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=18.1
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |++|.+..|.+.+.
T Consensus 126 ~~TSGTt-G~pK~v~~s~~~~~ 146 (408)
T TIGR01733 126 IYTSGST-GRPKGVVVTHRSLV 146 (408)
T ss_pred EEcCCCC-CCCCEEEeccHHHH
Confidence 3699999 99999999998664
No 147
>PF01797 Y1_Tnp: Transposase IS200 like; InterPro: IPR002686 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This entry represents a domain found in transposases for IS200 from Escherichia coli []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2F5G_B 2F4F_B 2EC2_F 2XM3_C 2XQC_D 2XO6_A 2XMA_E 2VJV_B 2VIH_B 2VJU_A ....
Probab=43.63 E-value=2e+02 Score=24.20 Aligned_cols=43 Identities=14% Similarity=0.223 Sum_probs=31.7
Q ss_pred cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec
Q 011497 335 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 388 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~ 388 (484)
+-.+. ..+.+.+.+...+. + .++.+.+|++.+ -|+.++++...
T Consensus 18 ~~~~~-~~~~l~~~l~~~~~---~-~~~~i~~~~vm~------nHvHllv~~~~ 60 (121)
T PF01797_consen 18 LFNDE-IREALLEILREICE---E-YGIEIIAFVVMP------NHVHLLVSIPP 60 (121)
T ss_dssp SSSHH-HHHHHHHHHHHHHH---H-TTEEEEEEEEET------TEEEEEEEE-T
T ss_pred eeehh-eeeeeeeccccccc---c-ccceeeeecccC------cccceeeeecc
Confidence 43444 56678888888877 6 789999998774 48999999854
No 148
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=42.66 E-value=14 Score=39.01 Aligned_cols=20 Identities=25% Similarity=0.124 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 141 ~~TSGTT-G~PKgv~~s~~~~ 160 (458)
T PRK09029 141 TLTSGST-GLPKAAVHTAQAH 160 (458)
T ss_pred EECCCCC-CCCCEEEEeHHHH
Confidence 4699999 9999999998754
No 149
>PRK07514 malonyl-CoA synthase; Validated
Probab=40.72 E-value=16 Score=38.94 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |++|-|+.|...+.
T Consensus 162 ~~TSGtT-G~PK~v~~s~~~l~ 182 (504)
T PRK07514 162 LYTSGTT-GRSKGAMLSHGNLL 182 (504)
T ss_pred EECCCCC-CCCcEEEEecHHHH
Confidence 4699999 99999999988653
No 150
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Probab=40.14 E-value=22 Score=38.38 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|.+.+
T Consensus 158 ~~TSGTT-G~PKgV~~th~~~ 177 (525)
T PRK05851 158 QGTAGST-GTPRTAILSPGAV 177 (525)
T ss_pred EeCCCCC-CCCcEEEecHHHH
Confidence 3699999 9999999988754
No 151
>PRK06164 acyl-CoA synthetase; Validated
Probab=40.09 E-value=20 Score=38.70 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=17.6
Q ss_pred cCCCCCCCCccccccCchHHH
Q 011497 3 SSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 3 ~TSGTT~g~~K~IP~t~~~l~ 23 (484)
.||||| |++|-|..|...+.
T Consensus 188 ~TSGtT-G~pK~v~~s~~~l~ 207 (540)
T PRK06164 188 TTSGTT-SGPKLVLHRQATLL 207 (540)
T ss_pred ECCCCC-CCCcEEEEehHHHH
Confidence 499999 99999999998763
No 152
>PRK05857 acyl-CoA synthetase; Validated
Probab=40.05 E-value=11 Score=40.77 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|..|.+.+
T Consensus 175 ~~TSGTT-G~PKgV~~sh~~~ 194 (540)
T PRK05857 175 IFTSGTT-GEPKAVLLANRTF 194 (540)
T ss_pred EeCCCCC-CCCCeEEEechhh
Confidence 4699999 9999999998754
No 153
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Probab=39.85 E-value=21 Score=37.95 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.+|-++.|...+
T Consensus 172 ~~TSGtT-G~PK~v~~s~~~l 191 (513)
T PRK07656 172 LFTSGTT-GRPKGAMLTHRQL 191 (513)
T ss_pred EeCCCCC-CCCCEEEEecHHH
Confidence 4699999 9999999998865
No 154
>PRK05852 acyl-CoA synthetase; Validated
Probab=39.19 E-value=23 Score=38.21 Aligned_cols=21 Identities=24% Similarity=0.607 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-|+.|.+.+.
T Consensus 182 l~TSGTT-G~PKgv~~~~~~~~ 202 (534)
T PRK05852 182 MFTGGTT-GLPKMVPWTHANIA 202 (534)
T ss_pred EeCCCCC-CCCcEEEecHHHHH
Confidence 4699999 99999999988653
No 155
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated. This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
Probab=38.94 E-value=17 Score=38.68 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.0
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-|+.|...+.
T Consensus 167 ~~TSGTT-G~PK~v~~t~~~l~ 187 (515)
T TIGR03098 167 LYTSGST-GRPKGVVLSHRNLV 187 (515)
T ss_pred EECCCCC-CCCceEEEecHHHH
Confidence 4699999 99999999988653
No 156
>PRK07787 acyl-CoA synthetase; Validated
Probab=38.73 E-value=18 Score=38.38 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-|..|.+.+.
T Consensus 134 ~~TSGTT-G~PK~v~~t~~~l~ 154 (471)
T PRK07787 134 VYTSGTT-GPPKGVVLSRRAIA 154 (471)
T ss_pred EECCCCC-CCCCEEEEeHHHHH
Confidence 4699999 99999999988653
No 157
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Probab=38.20 E-value=18 Score=39.14 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|.+.+
T Consensus 203 ~~TSGTT-G~PK~v~~s~~~l 222 (547)
T PRK13295 203 IYTSGTT-GEPKGVMHTANTL 222 (547)
T ss_pred EeCCCCC-CCCCEEEeccHHH
Confidence 3599999 9999999998754
No 158
>PRK08308 acyl-CoA synthetase; Validated
Probab=38.13 E-value=23 Score=36.87 Aligned_cols=20 Identities=40% Similarity=0.361 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 107 ~~TSGtT-G~PKgv~~s~~~l 126 (414)
T PRK08308 107 QYSSGTT-GEPKLIRRSWTEI 126 (414)
T ss_pred EECCCCC-CCCcEEEEehHhH
Confidence 3699999 9999999998765
No 159
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Probab=37.74 E-value=17 Score=38.54 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-|+.|...+.
T Consensus 149 ~~TSGTT-G~PK~v~~t~~~~~ 169 (503)
T PRK04813 149 IFTSGTT-GKPKGVQISHDNLV 169 (503)
T ss_pred EECCCCC-CCCcEEEeehHHHH
Confidence 3699999 99999999998653
No 160
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Probab=37.28 E-value=15 Score=38.82 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=16.9
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|+.|...+
T Consensus 147 ~~TSGtT-G~PK~v~~s~~~~ 166 (483)
T PRK03640 147 MYTSGTT-GKPKGVIQTYGNH 166 (483)
T ss_pred EeCCCcC-CCCcEEEEecHHH
Confidence 3699999 9999999997643
No 161
>PRK06145 acyl-CoA synthetase; Validated
Probab=37.09 E-value=15 Score=38.97 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|+.|.+.+
T Consensus 155 ~~TSGTT-G~PK~v~~s~~~~ 174 (497)
T PRK06145 155 MYTSGTT-DRPKGVMHSYGNL 174 (497)
T ss_pred EeCCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999998765
No 162
>PLN02246 4-coumarate--CoA ligase
Probab=36.96 E-value=17 Score=39.18 Aligned_cols=21 Identities=33% Similarity=0.225 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-+..|.+.+.
T Consensus 185 ~~TSGtT-G~PKgv~~s~~~l~ 205 (537)
T PLN02246 185 PYSSGTT-GLPKGVMLTHKGLV 205 (537)
T ss_pred EeCCCCC-CCCceEEEeHHHHH
Confidence 3599999 99999999987653
No 163
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.74 E-value=25 Score=37.88 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.+|-|+.|.+.+.
T Consensus 196 ~~TSGtT-G~PK~v~~s~~~l~ 216 (546)
T PRK08314 196 PYTSGTT-GVPKGCMHTHRTVM 216 (546)
T ss_pred EeCCCCC-CCCcEEEEecHHHH
Confidence 3699999 99999999998653
No 164
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
Probab=36.48 E-value=21 Score=38.50 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=18.0
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-+..|...+.
T Consensus 189 ~~TSGTT-G~PKgv~~s~~~~~ 209 (527)
T TIGR02275 189 QLSGGST-GTPKLIPRTHNDYY 209 (527)
T ss_pred EeCCCCC-CCCceeeeehHHHH
Confidence 4699999 99999999998653
No 165
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.38 E-value=14 Score=40.06 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|..|.+.+
T Consensus 212 ~~TSGTT-G~PK~v~~s~~~l 231 (563)
T PRK06710 212 QYTGGTT-GFPKGVMLTHKNL 231 (563)
T ss_pred EcCCCCC-CCCceEEEehHHH
Confidence 4699999 9999999998865
No 166
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.23 E-value=16 Score=39.80 Aligned_cols=20 Identities=40% Similarity=0.388 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|.+.+
T Consensus 225 ~~TSGTT-G~PK~v~~s~~~l 244 (573)
T PRK05605 225 LYTSGTT-GKPKGAQLTHRNL 244 (573)
T ss_pred EcCCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999999865
No 167
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.03 E-value=25 Score=38.39 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-.+.|.+.+-
T Consensus 177 ~yTSGTT-G~PKgv~~th~~~~ 197 (534)
T COG0318 177 LYTSGTT-GLPKGVVLTHRNLL 197 (534)
T ss_pred EeCCCCC-CCCCEeEEecHhHH
Confidence 3599999 99999999887653
No 168
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Probab=36.02 E-value=14 Score=40.19 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|.+.+
T Consensus 213 ~~TSGTT-G~PKgv~~s~~~l 232 (562)
T PRK05677 213 QYTGGTT-GVAKGAMLTHRNL 232 (562)
T ss_pred EeCCCCC-CCCcEEEEehhHH
Confidence 4699999 9999999998865
No 169
>PRK07867 acyl-CoA synthetase; Validated
Probab=35.99 E-value=26 Score=38.01 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 158 ~~TSGTT-G~PKgv~~s~~~l~ 178 (529)
T PRK07867 158 IFTSGTS-GDPKAVRCTHRKVA 178 (529)
T ss_pred EECCCCC-CCCcEEEecHHHHH
Confidence 4699999 99999999988653
No 170
>PLN02330 4-coumarate--CoA ligase-like 1
Probab=35.94 E-value=15 Score=39.91 Aligned_cols=21 Identities=29% Similarity=0.080 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-|+.|...+.
T Consensus 190 l~TSGTT-G~PKgv~~s~~~l~ 210 (546)
T PLN02330 190 PFSSGTT-GISKGVMLTHRNLV 210 (546)
T ss_pred EeCCCCc-CCCcEEEEehHHHH
Confidence 4699999 99999999987653
No 171
>PF12627 PolyA_pol_RNAbd: Probable RNA and SrmB- binding site of polymerase A; PDB: 1OU5_B 3H38_A 3H3A_B 3H39_B 3H37_A 3AQN_A 3AQK_A 3AQM_B 3AQL_B 1MIY_A ....
Probab=35.68 E-value=59 Score=24.40 Aligned_cols=41 Identities=17% Similarity=0.493 Sum_probs=31.6
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVR 204 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~ 204 (484)
.++.+.|+..+.+.+..|+|..+=++...++ ++..++|++.
T Consensus 21 ~is~ERi~~El~kil~~~~~~~~~~~l~~~g------ll~~ifP~l~ 61 (64)
T PF12627_consen 21 KISKERIREELEKILSSPNPSRAFKLLDELG------LLEYIFPELD 61 (64)
T ss_dssp GS-HHHHHHHHHHHHTSTTHHHHHHHHHHTT------CHHHHSTTHH
T ss_pred cCCHHHHHHHHHHHHcCCCHHHHHHHHHHcC------CHHHHCcccc
Confidence 4677889999999998889988766665553 7888899873
No 172
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Probab=35.06 E-value=16 Score=39.69 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-++.|...+
T Consensus 186 l~TSGTT-G~PK~V~~t~~~~ 205 (542)
T PRK06155 186 LYTSGTT-GPSKGVCCPHAQF 205 (542)
T ss_pred EECCCCC-CCCcEEEEEHHHH
Confidence 3699999 9999999998864
No 173
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Probab=34.45 E-value=27 Score=38.68 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 186 ~~TSGTT-G~PKgV~~sh~~l 205 (631)
T PRK07769 186 QYTSGST-RIPAGVQITHLNL 205 (631)
T ss_pred EeCCCCC-CCCcEEEEcHHHH
Confidence 4699999 9999999987754
No 174
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.40 E-value=2.6e+02 Score=22.99 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 011497 342 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 411 (484)
Q Consensus 342 e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L 411 (484)
+..+.+++..+.. .|+.|..--..+.. ...+.|.+|||+.+. .+ ..++++.+.|.+.+
T Consensus 25 pGsL~~vL~~Fa~-----~~INLt~IeSRP~~-~~~~~Y~FfVDieg~-----~~-~~~~~~l~~L~~~~ 82 (90)
T cd04931 25 VGALAKVLRLFEE-----KDINLTHIESRPSR-LNKDEYEFFINLDKK-----SA-PALDPIIKSLRNDI 82 (90)
T ss_pred CcHHHHHHHHHHH-----CCCCEEEEEeccCC-CCCceEEEEEEEEcC-----CC-HHHHHHHHHHHHHh
Confidence 4457777777755 57777766666532 346789999999642 12 33444445555544
No 175
>PRK07798 acyl-CoA synthetase; Validated
Probab=34.24 E-value=17 Score=38.76 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-+.+|.+.+
T Consensus 169 ~~TSGTT-G~PK~v~~s~~~~ 188 (533)
T PRK07798 169 LYTGGTT-GMPKGVMWRQEDI 188 (533)
T ss_pred EECCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999998865
No 176
>PRK06839 acyl-CoA synthetase; Validated
Probab=34.22 E-value=15 Score=38.80 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-+.+|...+
T Consensus 155 ~~TSGTT-G~PK~v~~s~~~l 174 (496)
T PRK06839 155 CYTSGTT-GKPKGAVLTQENM 174 (496)
T ss_pred EeCCCCC-CCCcEEEEEhHHH
Confidence 4699999 9999999998865
No 177
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family. Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
Probab=34.04 E-value=23 Score=37.81 Aligned_cols=21 Identities=33% Similarity=0.202 Sum_probs=18.1
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-|..|.+.+.
T Consensus 167 ~~TSGTT-G~PK~v~~s~~~~~ 187 (508)
T TIGR02262 167 LYSSGST-GMPKGVVHTHSNPY 187 (508)
T ss_pred EeCCCCC-CCCcEEEEechhHH
Confidence 3699999 99999999998764
No 178
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Probab=33.94 E-value=26 Score=37.96 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|.+.+
T Consensus 180 ~~TSGTT-G~PK~v~~s~~~l 199 (542)
T PRK07786 180 MYTSGTT-GRPKGAVLTHANL 199 (542)
T ss_pred EeCCCCC-ccchhhhhhHHHH
Confidence 3699999 9999999988765
No 179
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Probab=33.88 E-value=19 Score=39.15 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-+++|...+
T Consensus 210 l~TSGTT-G~PK~v~~s~~~l 229 (557)
T PRK07059 210 QYTGGTT-GVSKGATLLHRNI 229 (557)
T ss_pred EeCCCCC-CCCcEEEeecHHH
Confidence 3699999 9999999999865
No 180
>PRK08315 AMP-binding domain protein; Validated
Probab=33.78 E-value=29 Score=37.56 Aligned_cols=20 Identities=25% Similarity=0.172 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|+.|.+.+
T Consensus 205 ~~TSGtT-G~PK~v~~s~~~l 224 (559)
T PRK08315 205 QYTSGTT-GFPKGATLTHRNI 224 (559)
T ss_pred EEcCCCC-CCcceEEeeHHHH
Confidence 3699999 9999999999865
No 181
>PRK13388 acyl-CoA synthetase; Provisional
Probab=33.69 E-value=30 Score=37.53 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 156 ~~TSGTT-G~PKgv~~s~~~~ 175 (540)
T PRK13388 156 IFTSGTT-GAPKAVRCSHGRL 175 (540)
T ss_pred EECCCCC-CCCCEEEecHHHH
Confidence 4699999 9999999988765
No 182
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Probab=33.57 E-value=31 Score=38.16 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 199 ~yTSGTT-G~PKgV~~sh~~l 218 (612)
T PRK12476 199 QYTSGST-RPPVGVEITHRAV 218 (612)
T ss_pred EeCCCCC-CCCceEEeeHHHH
Confidence 4699999 9999999998765
No 183
>PRK12582 acyl-CoA synthetase; Provisional
Probab=33.29 E-value=27 Score=38.79 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 226 ~yTSGTT-G~PKgV~~th~~l 245 (624)
T PRK12582 226 LFTSGST-GMPKAVINTQRMM 245 (624)
T ss_pred EEcCCCC-CCCceEEeeHHHH
Confidence 4699999 9999999988754
No 184
>PLN03102 acyl-activating enzyme; Provisional
Probab=33.08 E-value=19 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=16.4
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |.||-|..|...
T Consensus 192 l~TSGTT-G~PK~v~~s~~~ 210 (579)
T PLN03102 192 NYTSGTT-ADPKGVVISHRG 210 (579)
T ss_pred EeCCcCC-CCCCEEEEecHH
Confidence 3699999 999999999764
No 185
>PRK13298 tRNA CCA-pyrophosphorylase; Provisional
Probab=32.83 E-value=1.4e+02 Score=31.88 Aligned_cols=77 Identities=9% Similarity=0.156 Sum_probs=50.7
Q ss_pred cceecccC---hhHHHHHHHHHHH----HH---HHHHHHHH----hcCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011497 121 IDGIFSPY---AIGLIGAFSFFES----KW---EQLCDDLE----NGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSI 186 (484)
Q Consensus 121 v~~i~~~f---~~~l~~~~~~le~----~w---~el~~dI~----~Gt~~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~ 186 (484)
|+.++..| |.-+++++++..+ .+ ++..+.|. ++.+. .++.+.|+.++++.|..|+|.++-++...
T Consensus 121 lR~v~~~F~EDPLRiLRa~RFaar~~~lgF~i~~~T~~~i~~~~~~~~l~-~~s~ERI~~El~k~L~~~~p~~~~~~L~~ 199 (417)
T PRK13298 121 LRHVSESFIEDPLRVLRVARFAALLVHLGFKIAKETMILMCIMVKKHELL-YLTPERIWNETEKALKTDNPHVYFQVLYE 199 (417)
T ss_pred EecCCcccccCHHHHHHHHHHHHHhccCCCccCHHHHHHHHHHhhhhhhh-cCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55555555 5566666666654 11 33333333 24443 47778899999999988999887666666
Q ss_pred hcCCCccccccccCCCCc
Q 011497 187 CGESNWSGIFSKLWPNVR 204 (484)
Q Consensus 187 ~~~~~~~gi~~~lWP~L~ 204 (484)
++ ++..++|.+.
T Consensus 200 ~g------~L~~~~PEl~ 211 (417)
T PRK13298 200 CN------ALKFLFPEID 211 (417)
T ss_pred cC------CHHHhCcchH
Confidence 63 6888999985
No 186
>PRK08316 acyl-CoA synthetase; Validated
Probab=31.83 E-value=31 Score=36.70 Aligned_cols=20 Identities=40% Similarity=0.321 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 177 ~~TSGtT-G~PK~v~~s~~~l 196 (523)
T PRK08316 177 LYTSGTE-SLPKGAMLTHRAL 196 (523)
T ss_pred EeCCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999998764
No 187
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Probab=31.79 E-value=21 Score=38.18 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 179 ~~TSGtT-G~PK~v~~t~~~l 198 (517)
T PRK08008 179 LFTSGTT-SRPKGVVITHYNL 198 (517)
T ss_pred EECCCCC-CCCcEEEEehHHH
Confidence 4699999 9999999998865
No 188
>COG2026 RelE Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]
Probab=31.38 E-value=85 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEeccCCceeeeeeCCEEEEeeeeCCCc
Q 011497 295 YEVVVTTYRGFYRYRLGDIVKVVDFYNSSP 324 (484)
Q Consensus 295 YeLVvTt~~GLyRYr~GDvV~v~g~~~~~P 324 (484)
+-......+|+||+|+||-.-+-.+.....
T Consensus 43 ~k~~~~~~~~~~R~RiG~YRlIy~i~d~~~ 72 (90)
T COG2026 43 GKKLRKGLSGKYRLRIGDYRLIYEIDDETL 72 (90)
T ss_pred ceecccCCCCeEEEEecCEEEEEEEECCce
Confidence 345555678899999999665555554444
No 189
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Probab=31.36 E-value=19 Score=39.39 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=17.0
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+-.|.+.+
T Consensus 187 ~~TSGTT-G~PKgv~~s~~~l 206 (576)
T PRK05620 187 CYSTGTT-GAPKGVVYSHRSL 206 (576)
T ss_pred EECCCCC-CCCceEEEEcHHH
Confidence 4699999 9999999888754
No 190
>PRK06060 acyl-CoA synthetase; Validated
Probab=31.18 E-value=27 Score=39.43 Aligned_cols=21 Identities=24% Similarity=0.075 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+.+|.+.+.
T Consensus 151 l~TSGST-G~PKgV~~sh~~~~ 171 (705)
T PRK06060 151 TYTSGTT-GPPKAAIHRHADPL 171 (705)
T ss_pred EECCCCC-CCCcEEEEccccHH
Confidence 3699999 99999999987653
No 191
>PLN03051 acyl-activating enzyme; Provisional
Probab=31.15 E-value=22 Score=38.15 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 125 ~yTSGTT-G~PKgV~~sh~~~ 144 (499)
T PLN03051 125 LFSSGTT-GEPKAIPWTHLSP 144 (499)
T ss_pred EeCCCCC-CCCceEEEccchH
Confidence 4699999 9999999998753
No 192
>PTZ00237 acetyl-CoA synthetase; Provisional
Probab=30.94 E-value=21 Score=40.05 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-|..|...
T Consensus 260 lyTSGTT-G~PKgV~~sh~~ 278 (647)
T PTZ00237 260 LYTSGTT-GNSKAVVRSNGP 278 (647)
T ss_pred EEcCCCC-CCCCeEEEcCcH
Confidence 3699999 999999988874
No 193
>PLN02574 4-coumarate--CoA ligase-like
Probab=30.31 E-value=23 Score=38.62 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.+|-+..|...+
T Consensus 204 ~~TSGTT-G~PKgV~~sh~~~ 223 (560)
T PLN02574 204 MYSSGTT-GASKGVVLTHRNL 223 (560)
T ss_pred EcCCCcc-CCCcEEEEeHHHH
Confidence 4699999 9999999998754
No 194
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=30.30 E-value=38 Score=38.39 Aligned_cols=20 Identities=30% Similarity=0.311 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 371 ~~TSGTT-G~PKgv~~sh~~l 390 (718)
T PRK08043 371 LFTSGSE-GHPKGVVHSHKSL 390 (718)
T ss_pred EECCCCC-CCCCEEEEcHHHH
Confidence 3699999 9999999998754
No 195
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=30.07 E-value=35 Score=27.67 Aligned_cols=22 Identities=32% Similarity=0.635 Sum_probs=15.0
Q ss_pred cCCceEEEEeccCCc--eeeeeeC
Q 011497 290 EIGKMYEVVVTTYRG--FYRYRLG 311 (484)
Q Consensus 290 e~G~~YeLVvTt~~G--LyRYr~G 311 (484)
-.|+.|+++|.+..| +|||--|
T Consensus 21 ~sgq~~D~~v~d~~g~~vwrwS~~ 44 (82)
T PF12690_consen 21 PSGQRYDFVVKDKEGKEVWRWSDG 44 (82)
T ss_dssp SSS--EEEEEE-TT--EEEETTTT
T ss_pred CCCCEEEEEEECCCCCEEEEecCC
Confidence 489999999998888 8998644
No 196
>PRK13382 acyl-CoA synthetase; Provisional
Probab=30.05 E-value=35 Score=36.91 Aligned_cols=20 Identities=30% Similarity=0.160 Sum_probs=16.8
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+-+|...+
T Consensus 202 l~TSGTT-G~PKgv~~s~~~~ 221 (537)
T PRK13382 202 LLTSGTT-GTPKGARRSGPGG 221 (537)
T ss_pred EECCCCC-CCCCEEEeccchH
Confidence 3599999 9999999998644
No 197
>PLN02479 acetate-CoA ligase
Probab=29.82 E-value=22 Score=38.86 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.6
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |.||-+.+|.+.
T Consensus 201 ~yTSGTT-G~PKgV~~sh~~ 219 (567)
T PLN02479 201 GYTSGTT-ASPKGVVLHHRG 219 (567)
T ss_pred EECCCCC-CCCcEEEeccHH
Confidence 4699999 999999999764
No 198
>PRK06178 acyl-CoA synthetase; Validated
Probab=29.71 E-value=22 Score=38.66 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-+..|...+
T Consensus 215 ~~TSGTT-G~PK~v~~t~~~~ 234 (567)
T PRK06178 215 NYTGGTT-GMPKGCEHTQRDM 234 (567)
T ss_pred EeCCCCC-CCCceEEeccHHH
Confidence 4699999 9999999998754
No 199
>PRK13383 acyl-CoA synthetase; Provisional
Probab=29.40 E-value=24 Score=37.84 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=16.0
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-|..|..+
T Consensus 180 l~TSGTT-G~PK~v~~s~~~ 198 (516)
T PRK13383 180 LLTSGTT-GKPKGVPRAPQL 198 (516)
T ss_pred EECCCCC-CCCCeeeecchh
Confidence 3699999 999999988653
No 200
>PLN02861 long-chain-fatty-acid-CoA ligase
Probab=29.22 E-value=25 Score=39.50 Aligned_cols=20 Identities=30% Similarity=0.414 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||=+..|...+
T Consensus 226 ~yTSGTT-G~PKGV~lth~~l 245 (660)
T PLN02861 226 MYTSGTT-GEPKGVILTNRAI 245 (660)
T ss_pred EecCCCC-CCCCEEEEecHHH
Confidence 4699999 9999999998754
No 201
>PRK12583 acyl-CoA synthetase; Provisional
Probab=29.07 E-value=39 Score=36.42 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.+|-+..|...+
T Consensus 207 ~~TSGsT-G~PK~v~~s~~~l 226 (558)
T PRK12583 207 QYTSGTT-GFPKGATLSHHNI 226 (558)
T ss_pred EECCCCC-CCCceEEeeHHHH
Confidence 4699999 9999999998865
No 202
>TIGR03205 pimA dicarboxylate--CoA ligase PimA. PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
Probab=29.04 E-value=30 Score=37.39 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=18.0
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 198 ~~TSGTT-G~PK~v~~s~~~l~ 218 (541)
T TIGR03205 198 QYTGGTT-GLPKGAMLTHGNLT 218 (541)
T ss_pred EECCCCC-CCCcEEEEeHHHHH
Confidence 4699999 99999999998653
No 203
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Probab=28.90 E-value=40 Score=36.41 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=17.1
Q ss_pred cCCCCCCCCccccccCchHH
Q 011497 3 SSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 3 ~TSGTT~g~~K~IP~t~~~l 22 (484)
.||||| |+||-+.+|...+
T Consensus 194 ~TSGTT-G~PK~v~~t~~~l 212 (547)
T PRK06087 194 FTSGTE-GLPKGVMLTHNNI 212 (547)
T ss_pred eCCCCC-CCCcEEEEecHHH
Confidence 699999 9999999999865
No 204
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=28.51 E-value=33 Score=38.79 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=17.9
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.||-+..|.+.+-
T Consensus 270 iyTSGTT-G~PKGV~lth~nl~ 290 (700)
T PTZ00216 270 MYTSGTT-GDPKGVMHTHGSLT 290 (700)
T ss_pred EEeCCCC-CcCcEEEEEhHHHH
Confidence 4699999 99999999988653
No 205
>PRK10885 cca multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase; Reviewed
Probab=27.98 E-value=1.2e+02 Score=32.36 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=49.7
Q ss_pred cceecccC---hhHHHHHHHHHHHH-------HHHHHH----HHHhcCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHHH
Q 011497 121 IDGIFSPY---AIGLIGAFSFFESK-------WEQLCD----DLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSI 186 (484)
Q Consensus 121 v~~i~~~f---~~~l~~~~~~le~~-------w~el~~----dI~~Gt~~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~ 186 (484)
|+.++..| |.-+++++++..+. -++..+ .+.+|.+.. ++.+.+++.+.+.|..|+|..+-++...
T Consensus 121 lr~v~~~f~eDPlRiLRa~RFaarl~~lgf~i~~~T~~~i~~~~~~~~L~~-~~~ERi~~El~kiL~~~~p~~~l~~L~~ 199 (409)
T PRK10885 121 LRHVSPAFAEDPLRVLRVARFAARFAHLGFRIAPETLALMREMVASGELDA-LTPERVWKETERALMERNPQVFFQVLRD 199 (409)
T ss_pred eEeCCchhhhCHHHHHHHHHHHHHhccCCCCcCHHHHHHHHHhhhhchhhh-CCHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 56666555 45667777766554 023333 333345444 6778899999999977888876666555
Q ss_pred hcCCCccccccccCCCCc
Q 011497 187 CGESNWSGIFSKLWPNVR 204 (484)
Q Consensus 187 ~~~~~~~gi~~~lWP~L~ 204 (484)
++ ++..++|.+.
T Consensus 200 ~g------~L~~l~PEl~ 211 (409)
T PRK10885 200 CG------ALAVLLPEID 211 (409)
T ss_pred hh------HHHHHhhHHH
Confidence 53 6777888774
No 206
>PLN02614 long-chain acyl-CoA synthetase
Probab=27.88 E-value=27 Score=39.37 Aligned_cols=20 Identities=25% Similarity=0.369 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||=+..|.+.+
T Consensus 229 ~yTSGTT-G~PKGV~lth~nl 248 (666)
T PLN02614 229 MYTSGTT-GDPKGVMISNESI 248 (666)
T ss_pred EEcCCCC-CCCcEEEEecHHH
Confidence 4699999 9999999998765
No 207
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Probab=27.64 E-value=44 Score=36.37 Aligned_cols=20 Identities=20% Similarity=0.029 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|..|.+.+
T Consensus 213 ~~TSGTT-G~PKgv~~s~~~l 232 (562)
T PRK12492 213 QYTGGTT-GLAKGAMLTHGNL 232 (562)
T ss_pred EeCCCCC-CCCceEEEechhH
Confidence 4699999 9999999998755
No 208
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Probab=27.33 E-value=27 Score=38.99 Aligned_cols=19 Identities=42% Similarity=0.298 Sum_probs=16.4
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-|..|...
T Consensus 269 lyTSGTT-G~PKgV~~sh~~ 287 (655)
T PRK03584 269 LYSSGTT-GLPKCIVHGHGG 287 (655)
T ss_pred EecCCCC-CCCceEEECccH
Confidence 3699999 999999998864
No 209
>PRK09192 acyl-CoA synthetase; Validated
Probab=27.33 E-value=35 Score=37.30 Aligned_cols=20 Identities=30% Similarity=0.262 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.+|-+.+|.+.+
T Consensus 182 ~~TSGTT-G~PKgv~~sh~~~ 201 (579)
T PRK09192 182 QYSSGST-RFPRGVIITHRAL 201 (579)
T ss_pred EecCCCC-CCCceEEeeHHHH
Confidence 3599999 9999999988765
No 210
>PLN03052 acetate--CoA ligase; Provisional
Probab=27.33 E-value=29 Score=39.63 Aligned_cols=20 Identities=45% Similarity=0.569 Sum_probs=16.9
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-|..|...+
T Consensus 362 lyTSGTT-G~PKgVv~sh~~~ 381 (728)
T PLN03052 362 LFSSGTT-GEPKAIPWTQLTP 381 (728)
T ss_pred EecCCCC-CCCceEEECchHH
Confidence 3699999 9999999988743
No 211
>PRK11899 prephenate dehydratase; Provisional
Probab=27.19 E-value=4.2e+02 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecC
Q 011497 342 ERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREG 389 (484)
Q Consensus 342 e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~ 389 (484)
+-.+.+++..+.. .|+.|...-..+.. +.+..|.+|+|+.+.
T Consensus 205 pGaL~~vL~~Fa~-----~gINLtkIeSRP~~-~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 205 PAALYKALGGFAT-----NGVNMTKLESYMVG-GSFTATQFYADIEGH 246 (279)
T ss_pred CChHHHHHHHHHH-----cCCCeeeEEeeecC-CCCceEEEEEEEECC
Confidence 4567777777765 57777777666543 357899999999753
No 212
>PRK06188 acyl-CoA synthetase; Validated
Probab=27.17 E-value=36 Score=36.45 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.8
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |.+|-+..|...+.
T Consensus 174 ~~TSGtT-G~pk~v~~s~~~l~ 194 (524)
T PRK06188 174 AYTGGTT-GKPKGVMGTHRSIA 194 (524)
T ss_pred EeCCCCC-CCCceeeeehHHHH
Confidence 4699999 99999999988653
No 213
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Probab=27.16 E-value=30 Score=37.61 Aligned_cols=20 Identities=15% Similarity=-0.003 Sum_probs=17.4
Q ss_pred cCCCCCCCCccccccCchHHH
Q 011497 3 SSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 3 ~TSGTT~g~~K~IP~t~~~l~ 23 (484)
.||||| |++|-+..|...+.
T Consensus 213 ~TSGtT-G~PK~v~~t~~~l~ 232 (560)
T PRK08974 213 YTGGTT-GVAKGAMLTHRNML 232 (560)
T ss_pred ECCCCC-CCCcEEEEchHHHH
Confidence 599999 99999999988653
No 214
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=26.96 E-value=47 Score=28.81 Aligned_cols=84 Identities=10% Similarity=0.103 Sum_probs=38.3
Q ss_pred ceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh-Chh
Q 011497 336 SFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF-GSI 414 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~ 414 (484)
.+-.+-+.+|..++++.+. . ++.. +..+..--|-+|++++-.. +-+.+..+...|.+.| ...
T Consensus 20 F~~~vqPvEIa~~L~remd---~--~a~~----~~~~r~~aPN~y~V~Ls~~--------D~~~l~~~~~~l~~el~~~l 82 (116)
T PF12401_consen 20 FRSEVQPVEIAKALRREMD---D--QARV----VSRGRTLAPNVYTVELSPE--------DYERLSPWGDRLARELADYL 82 (116)
T ss_dssp HTTSS-THHHHHHHHHHHH---H--T-B-------TT--B---EEEEEEEHH--------HHHHH-S-SHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHHHHH---h--CCee----cCCCCEEcCeeEEEEECHH--------HHHHHhhhHHHHHHHHHHHH
Confidence 3455788999999999887 2 2111 1111111266887665321 1222322223344444 222
Q ss_pred HHHhhhcC--CCCCcEEEEeCCCh
Q 011497 415 YKVQRDRG--EISPLSVSIVKPGT 436 (484)
Q Consensus 415 Y~~~R~~g--~l~p~~v~~v~~gt 436 (484)
.+..++.| ..+|+.|++.....
T Consensus 83 ~~~a~~qgy~~~G~v~V~~~~d~~ 106 (116)
T PF12401_consen 83 AEHAREQGYTFVGPVTVEFEEDPD 106 (116)
T ss_dssp HHHHHHHT-B-SS--EEEEEEETT
T ss_pred HHHHHHCCCeecCCEEEEEEECCC
Confidence 33445556 56999999976644
No 215
>PRK05850 acyl-CoA synthetase; Validated
Probab=26.65 E-value=25 Score=38.28 Aligned_cols=20 Identities=15% Similarity=0.160 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |++|-|..|...+
T Consensus 166 ~~TSGTT-G~PKgV~~sh~~l 185 (578)
T PRK05850 166 QYTSGST-RTPAGVMVSHRNV 185 (578)
T ss_pred EeCCCCC-CCCceEEEeHHHH
Confidence 4699999 9999999988754
No 216
>PLN02430 long-chain-fatty-acid-CoA ligase
Probab=26.48 E-value=41 Score=37.82 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 226 iyTSGTT-G~PKGV~lth~~~ 245 (660)
T PLN02430 226 MYTSGTS-GDPKGVVLTHEAV 245 (660)
T ss_pred EECCCCC-CCCCEEEeecHHH
Confidence 4699999 9999999998754
No 217
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
Probab=25.92 E-value=31 Score=38.66 Aligned_cols=19 Identities=42% Similarity=0.312 Sum_probs=16.3
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-|..|...
T Consensus 270 lyTSGTT-G~PKgV~~sh~~ 288 (652)
T TIGR01217 270 LFSSGTT-GLPKCIVHSAGG 288 (652)
T ss_pred EEcCCCC-CCCCeEEecccH
Confidence 4699999 999999988764
No 218
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Probab=25.83 E-value=31 Score=37.28 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=24.9
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCcee
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECY 241 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~ 241 (484)
.++|+.+ +.+|. .....+++++.++ ++++ .+||+||+.
T Consensus 292 ~~~l~~~--~~~G~~l~~~~~~~~~~~~~-~~l~-~~YG~tE~~ 331 (539)
T PRK07008 292 FSTLRRT--VIGGSACPPAMIRTFEDEYG-VEVI-HAWGMTEMS 331 (539)
T ss_pred cccceEE--EEcCCCCCHHHHHHHHHHhC-Ccee-ccccccccc
Confidence 4666643 33443 3445566766665 8898 999999974
No 219
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=25.75 E-value=54 Score=32.39 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=27.6
Q ss_pred CccCCCCCCCCccccccCchHH-HHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSAL-SKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l-~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |-+=++|...++- ++ .+.++..+...+-+++ |..
T Consensus 151 f~KTSG~k-GlHV~vPl~~~~~~~~-~r~fa~~iA~~l~~~~--Pd~ 193 (245)
T TIGR02778 151 FVKTSGGK-GLHVYVPLRPTLSWDE-VKDFAKALAQALAQQM--PDR 193 (245)
T ss_pred ceEccCCC-eEEEEEECCCCCCHHH-HHHHHHHHHHHHHHHC--chh
Confidence 77999999 9999999998643 33 2233444444444444 755
No 220
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase. Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
Probab=25.49 E-value=46 Score=35.90 Aligned_cols=20 Identities=30% Similarity=0.348 Sum_probs=17.0
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||-|..+.+.+
T Consensus 201 ~~TSGtT-G~PK~v~~s~~~~ 220 (538)
T TIGR03208 201 IYTSGTT-GEPKGVMHTANTL 220 (538)
T ss_pred EECCCCC-CCCcEEEeehHHH
Confidence 3699999 9999999988754
No 221
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Probab=25.12 E-value=47 Score=35.81 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |++|-+..|.+.+
T Consensus 158 ~~TSGtT-G~PKgv~~s~~~~ 177 (545)
T PRK07768 158 QLTSGST-GSPKAVQITHGNL 177 (545)
T ss_pred EeCCCCC-CCCceEEEcHHHH
Confidence 4699999 9999999998865
No 222
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=24.93 E-value=58 Score=31.84 Aligned_cols=43 Identities=19% Similarity=0.128 Sum_probs=27.6
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |=+=++|...++--+-.+.++..+...+-+++ |..
T Consensus 136 f~KTSG~k-GlHv~vPl~~~~~~~~~r~fa~~iA~~l~~~~--P~~ 178 (228)
T cd04865 136 YPKTSGAR-GLHIYVPIAPRYTFEEVRRFAELLAREVERRL--PDL 178 (228)
T ss_pred ceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC--chh
Confidence 67899999 99999999886432222333444444444444 765
No 223
>PRK06018 putative acyl-CoA synthetase; Provisional
Probab=24.70 E-value=30 Score=37.40 Aligned_cols=37 Identities=19% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCcee
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECY 241 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~ 241 (484)
.|+++.+ +.+|. ....++++++ + +++++ ..||+||+.
T Consensus 293 ~~~lr~~--~~~G~~l~~~~~~~~~~-~-~~~~~-~~YG~tE~~ 331 (542)
T PRK06018 293 LPHLKMV--VCGGSAMPRSMIKAFED-M-GVEVR-HAWGMTEMS 331 (542)
T ss_pred cccceEE--EEcCCCCCHHHHHHHHH-h-CCCeE-eeecccccC
Confidence 3777744 22332 2444567777 5 48999 999999974
No 224
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=24.63 E-value=59 Score=31.77 Aligned_cols=43 Identities=19% Similarity=0.143 Sum_probs=27.3
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |=+=++|...+.--+-.+.++..+...+-+++ |..
T Consensus 135 f~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~iA~~l~~~~--P~~ 177 (227)
T cd04861 135 FPKTSGGK-GLHVYVPLAPRYTWDEVRAFAKALARELARRL--PDL 177 (227)
T ss_pred ceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC--chh
Confidence 67899999 99999999976432223333444444444444 655
No 225
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=24.19 E-value=64 Score=24.08 Aligned_cols=19 Identities=21% Similarity=0.737 Sum_probs=13.9
Q ss_pred eeeCCEEEEeeeeCCCcEEEEe
Q 011497 308 YRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 308 Yr~GDvV~v~g~~~~~P~i~F~ 329 (484)
|.+||+|+..+ ..|.+...
T Consensus 1 f~~GDvV~LKS---GGp~MTV~ 19 (53)
T PF09926_consen 1 FKIGDVVQLKS---GGPRMTVT 19 (53)
T ss_pred CCCCCEEEEcc---CCCCeEEE
Confidence 67899999977 57755433
No 226
>PRK08162 acyl-CoA synthetase; Validated
Probab=24.18 E-value=34 Score=36.84 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.4
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-|.+|.+.
T Consensus 188 ~~TSGTT-G~PKgv~~t~~~ 206 (545)
T PRK08162 188 NYTSGTT-GNPKGVVYHHRG 206 (545)
T ss_pred EeCCCCC-CCCcEEEEecHH
Confidence 3599999 999999999764
No 227
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=23.92 E-value=46 Score=39.55 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-++.|.+.+
T Consensus 788 ~~TSGTT-G~PKgv~~s~~~~ 807 (1146)
T PRK08633 788 IFSSGSE-GEPKGVMLSHHNI 807 (1146)
T ss_pred EECCCCC-CCCceEEechHHH
Confidence 3699999 9999999998865
No 228
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=23.21 E-value=65 Score=31.57 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=27.4
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |-+=+||...++--+-.+.++..+...+-+++ |..
T Consensus 139 ~~KTSG~k-GlHV~vPl~~~~~~~~vr~fa~~~A~~l~~~~--P~~ 181 (231)
T cd04863 139 FPKTSGSK-GLHLYVPLDGPVSSDQTKEFAKALARELEREH--PDL 181 (231)
T ss_pred ceECCCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC--chh
Confidence 67899999 99999999886532222333444444444444 655
No 229
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=22.87 E-value=4.8e+02 Score=26.35 Aligned_cols=68 Identities=15% Similarity=0.200 Sum_probs=43.2
Q ss_pred EeeeeCCCcEEEEeeeC-CC-----------cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEE
Q 011497 316 VVDFYNSSPQVEFVMRA-PK-----------SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIF 383 (484)
Q Consensus 316 v~g~~~~~P~i~F~gR~-~~-----------i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~ 383 (484)
+.+..++.-||-.++|. .. +....=-+-.+.+++..+.. .|+.+.-.-..+ ....++.|.+|
T Consensus 167 I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~-----~gINlTkIESRP-~k~~~~~Y~F~ 240 (279)
T COG0077 167 IEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAK-----RGINLTKIESRP-LKTGLGEYLFF 240 (279)
T ss_pred ccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHH-----cCcceeeEeecc-cCCCCeeEEEE
Confidence 55666777788888873 21 22222336667777776654 576665554444 33458899999
Q ss_pred EEeecC
Q 011497 384 VEIREG 389 (484)
Q Consensus 384 vE~~~~ 389 (484)
||+.+.
T Consensus 241 iD~eg~ 246 (279)
T COG0077 241 IDIEGH 246 (279)
T ss_pred EEEecC
Confidence 999754
No 230
>PTZ00342 acyl-CoA synthetase; Provisional
Probab=22.34 E-value=41 Score=38.67 Aligned_cols=20 Identities=40% Similarity=0.416 Sum_probs=17.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |.||=+..|.+.+
T Consensus 310 iYTSGTT-G~PKGVmlTH~nl 329 (746)
T PTZ00342 310 VYTSGTS-GKPKGVMLSNKNL 329 (746)
T ss_pred EEcCCCC-CCCCEEEEccHHH
Confidence 4699999 9999999998764
No 231
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=21.94 E-value=72 Score=31.16 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=26.9
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.. |-+=++|...+.--+-.+.++..+...+-.++ |..
T Consensus 135 ~~KTSG~k-GlHV~vPl~~~~~~~~~r~fa~~lA~~l~~~~--P~~ 177 (227)
T cd04862 135 FVKTSGGK-GLHVVVPLAPRAGWDEVKAFAKALAQHLARTN--PDR 177 (227)
T ss_pred ceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC--chh
Confidence 67899999 99999999976432222223444444444444 665
No 232
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=21.57 E-value=73 Score=31.04 Aligned_cols=42 Identities=12% Similarity=0.128 Sum_probs=25.6
Q ss_pred CccCCCCCCCCccccccC-chHH-HHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYF-DSAL-SKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t-~~~l-~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |-+=++|.. .+.- ++ .+.++..+...+-+.+ |..
T Consensus 130 f~KTSG~k-GlHV~vPl~~~~~~~~~-~r~fa~~iA~~l~~~~--P~~ 173 (223)
T cd04866 130 FVKTSGNK-GLQVYIPLPDNKFTYDE-TRLFTEFIAEYLCQQF--PEL 173 (223)
T ss_pred ceEccCCC-eEEEEEEcCCCCCCHHH-HHHHHHHHHHHHHHHC--chh
Confidence 67999999 999999999 4422 22 2222334343344444 654
No 233
>cd01683 EF2_IV_snRNP EF-2_domain IV_snRNP domain is a part of 116kD U5-specific protein of the U5 small nucleoprotein (snRNP) particle, essential component of the spliceosome. The protein is structurally closely related to the eukaryotic translational elongation factor EF2. This domain has been also identified in 114kD U5-specific protein of Saccharomyces cerevisiae and may play an important role either in splicing process itself or the recycling of spliceosomal snRNP.
Probab=20.95 E-value=1e+02 Score=28.75 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCCCC
Q 011497 144 EQLCDDLENGYPCLD 158 (484)
Q Consensus 144 ~el~~dI~~Gt~~~~ 158 (484)
++|+++|++|.++..
T Consensus 38 ~~l~~~i~~g~~~~~ 52 (178)
T cd01683 38 KGLAEDIENGQLKLS 52 (178)
T ss_pred HHHHHHHHcCCCCcC
Confidence 468999999998764
No 234
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=20.51 E-value=80 Score=30.89 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=27.3
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH 46 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~ 46 (484)
|.+|||.+ |-+=++|...++--+-.+.++..+...+-+.+ |..
T Consensus 136 f~KTSG~k-GlHv~vPl~~~~~~~~~r~fa~~lA~~l~~~~--P~~ 178 (228)
T cd04864 136 FVKTTGSR-GFHVVVPLDGRGDFDDVRAFAAEAADALAKRD--PDL 178 (228)
T ss_pred ceEccCCC-eEEEEEEcCCCCCHHHHHHHHHHHHHHHHHHC--chh
Confidence 67899999 99999999886432222233444444444444 765
No 235
>cd05830 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5 represented by Streptomyces avermitilis SAV4337. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=20.18 E-value=96 Score=27.45 Aligned_cols=29 Identities=28% Similarity=0.479 Sum_probs=22.6
Q ss_pred cccccCCceEEEEeccCCceeeeeeCCEEEE
Q 011497 286 FSGVEIGKMYEVVVTTYRGFYRYRLGDIVKV 316 (484)
Q Consensus 286 l~ele~G~~YeLVvTt~~GLyRYr~GDvV~v 316 (484)
|.+++.|. ++.+++..|-|+|++=++..|
T Consensus 63 L~~l~~Gd--~i~v~~~~~~~~Y~V~~~~~v 91 (137)
T cd05830 63 LDKLRPGD--KIVVETADGWYTYVVRSSEIV 91 (137)
T ss_pred HhhCCCCC--EEEEEECCeEEEEEEeEEEEE
Confidence 55678887 777888888899988777655
Done!