Query 011497
Match_columns 484
No_of_seqs 142 out of 596
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:21:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4epl_A Jasmonic acid-amido syn 100.0 7E-110 2E-114 896.9 42.1 464 1-478 103-577 (581)
2 4b2g_A GH3-1 auxin conjugating 100.0 1E-108 3E-113 890.8 36.9 473 1-479 104-586 (609)
3 4eql_A 4-substituted benzoates 100.0 6E-109 2E-113 891.6 32.7 469 1-478 98-579 (581)
4 3qov_A Phenylacetate-coenzyme 99.5 1.1E-12 3.9E-17 136.6 21.9 201 200-439 205-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.5 4.6E-12 1.6E-16 132.3 24.6 201 200-438 211-426 (443)
6 2y27_A Phenylacetate-coenzyme 99.5 1.7E-12 5.8E-17 135.4 21.1 202 200-438 209-422 (437)
7 4fuq_A Malonyl COA synthetase; 98.9 5.8E-08 2E-12 103.0 19.5 130 199-351 266-420 (503)
8 3kxw_A Saframycin MX1 syntheta 98.8 3E-08 1E-12 106.8 15.9 107 288-411 393-529 (590)
9 3l8c_A D-alanine--poly(phospho 98.8 1.3E-07 4.3E-12 100.6 18.1 131 199-351 262-424 (521)
10 1mdb_A 2,3-dihydroxybenzoate-A 98.7 2.7E-07 9.3E-12 98.7 18.9 129 200-351 297-451 (539)
11 3etc_A AMP-binding protein; ad 98.7 2.7E-07 9.1E-12 99.9 17.8 129 200-351 340-496 (580)
12 3rg2_A Enterobactin synthase c 98.6 1.4E-06 4.7E-11 94.9 20.9 130 199-351 300-455 (617)
13 3o83_A Peptide arylation enzym 98.6 3.3E-07 1.1E-11 98.2 13.0 131 200-352 306-461 (544)
14 3e7w_A D-alanine--poly(phospho 98.5 2.4E-06 8.2E-11 90.6 18.1 134 197-352 256-420 (511)
15 2d1s_A Luciferase, luciferin 4 98.5 1.3E-06 4.3E-11 93.8 15.3 131 200-351 308-462 (548)
16 2v7b_A Benzoate-coenzyme A lig 98.5 2.5E-06 8.4E-11 90.8 16.8 116 215-351 314-450 (529)
17 3ipl_A 2-succinylbenzoate--COA 98.5 2.8E-06 9.7E-11 89.6 17.1 57 291-351 345-419 (501)
18 3ni2_A 4-coumarate:COA ligase; 98.4 2.7E-06 9.2E-11 90.8 15.8 131 199-351 295-455 (536)
19 3c5e_A Acyl-coenzyme A synthet 98.4 5E-06 1.7E-10 89.6 17.7 129 200-351 321-477 (570)
20 3nyq_A Malonyl-COA ligase; A/B 98.4 3.2E-06 1.1E-10 89.7 14.1 120 215-351 286-427 (505)
21 3g7s_A Long-chain-fatty-acid-- 98.3 1.6E-06 5.6E-11 92.8 11.5 131 199-351 294-460 (549)
22 1t5h_X 4-chlorobenzoyl COA lig 98.3 4.5E-06 1.5E-10 88.3 14.6 130 200-351 271-423 (504)
23 3fce_A D-alanine--poly(phospho 98.3 2.4E-06 8.3E-11 90.5 12.2 132 198-352 258-421 (512)
24 1pg4_A Acetyl-COA synthetase; 98.3 1.6E-05 5.6E-10 87.1 19.1 226 200-473 377-645 (652)
25 3rix_A Luciferase, luciferin 4 98.2 2.1E-06 7.1E-11 92.0 9.5 132 200-352 306-461 (550)
26 3ivr_A Putative long-chain-fat 98.2 7.4E-07 2.5E-11 94.4 5.7 129 200-352 271-422 (509)
27 3gqw_A Fatty acid AMP ligase; 98.2 1.3E-05 4.3E-10 85.8 15.3 59 289-352 406-483 (576)
28 1ry2_A Acetyl-coenzyme A synth 98.2 1.8E-05 6.2E-10 87.0 16.5 229 200-471 383-659 (663)
29 4gs5_A Acyl-COA synthetase (AM 98.2 3.6E-06 1.2E-10 85.5 9.9 61 289-354 210-274 (358)
30 3r44_A Fatty acyl COA syntheta 98.1 9.7E-06 3.3E-10 86.1 10.1 126 200-351 283-434 (517)
31 1amu_A GRSA, gramicidin synthe 98.0 6.9E-05 2.4E-09 80.6 14.3 130 200-351 292-451 (563)
32 3ite_A SIDN siderophore synthe 98.0 1.4E-05 4.7E-10 85.7 8.5 130 200-352 293-449 (562)
33 3tsy_A Fusion protein 4-coumar 97.9 2E-05 6.8E-10 90.3 9.2 132 200-352 343-503 (979)
34 4gr5_A Non-ribosomal peptide s 97.9 1.7E-05 5.8E-10 85.3 7.5 131 200-352 325-491 (570)
35 4dg8_A PA1221; ANL superfamily 97.9 6.7E-05 2.3E-09 81.8 12.0 131 200-351 275-440 (620)
36 3hgu_A EHPF; phenazine, antibi 97.8 5E-05 1.7E-09 76.8 9.3 101 201-321 231-343 (369)
37 2vsq_A Surfactin synthetase su 97.7 0.00014 4.7E-09 86.0 12.9 129 201-351 720-882 (1304)
38 1v25_A Long-chain-fatty-acid-C 97.4 0.00021 7.1E-09 76.2 8.0 57 292-352 381-457 (541)
39 3lax_A Phenylacetate-coenzyme 95.9 0.019 6.6E-07 47.5 7.3 90 331-439 2-94 (109)
40 3gxs_A Phenylacetate-coenzyme 95.5 0.034 1.1E-06 46.2 7.2 91 330-439 1-94 (109)
41 3t5a_A Long-chain-fatty-acid-- 94.8 0.088 3E-06 54.4 9.6 40 199-242 309-356 (480)
42 3onr_A Protein transport prote 68.0 13 0.00045 28.5 6.1 49 338-387 15-63 (72)
43 2cc6_A VNG1446H, dodecin; flav 64.3 15 0.00051 27.8 5.7 49 338-387 13-61 (68)
44 3hgu_A EHPF; phenazine, antibi 63.1 2.1 7.3E-05 42.4 1.1 21 2-23 97-117 (369)
45 4gs5_A Acyl-COA synthetase (AM 60.0 2.8 9.5E-05 41.7 1.3 20 3-23 44-63 (358)
46 2yiz_A Dodecin; flavoprotein, 58.7 29 0.00098 26.3 6.4 49 338-387 15-63 (69)
47 2ux9_A Dodecin; flavoprotein; 56.6 15 0.00053 27.9 4.6 49 338-387 15-63 (69)
48 2vxa_A Dodecin; flavoprotein, 56.0 16 0.00053 28.0 4.6 49 338-387 16-64 (72)
49 2vjv_A Transposase ORFA; DNA-b 55.9 97 0.0033 26.7 10.7 103 326-444 25-132 (159)
50 3t5a_A Long-chain-fatty-acid-- 49.6 6.6 0.00022 40.0 2.1 21 2-23 189-209 (480)
51 3nyq_A Malonyl-COA ligase; A/B 47.5 7.8 0.00027 40.2 2.3 22 2-24 161-182 (505)
52 3g7s_A Long-chain-fatty-acid-- 46.2 8.6 0.00029 40.3 2.4 21 2-23 186-206 (549)
53 3e7w_A D-alanine--poly(phospho 43.9 9.2 0.00031 39.6 2.2 21 2-23 149-169 (511)
54 2d1s_A Luciferase, luciferin 4 43.6 9.2 0.00032 40.1 2.1 20 2-22 198-217 (548)
55 3gqw_A Fatty acid AMP ligase; 43.3 9.3 0.00032 39.9 2.1 20 2-22 182-201 (576)
56 1t5h_X 4-chlorobenzoyl COA lig 42.6 8.9 0.0003 39.6 1.8 21 2-23 159-179 (504)
57 3r44_A Fatty acyl COA syntheta 41.6 9.3 0.00032 39.7 1.8 21 2-23 176-196 (517)
58 3fce_A D-alanine--poly(phospho 41.5 8.2 0.00028 39.9 1.3 21 2-23 150-170 (512)
59 2fyx_A Transposase, putative; 41.1 1.6E+02 0.0055 24.7 10.6 42 335-388 38-79 (143)
60 3ivr_A Putative long-chain-fat 40.4 8.1 0.00028 39.9 1.1 21 2-23 166-186 (509)
61 3ite_A SIDN siderophore synthe 40.0 11 0.00037 39.5 2.0 22 2-24 181-202 (562)
62 3ni2_A 4-coumarate:COA ligase; 38.7 9.8 0.00033 39.7 1.4 20 2-22 184-203 (536)
63 2f5g_A Transposase, putative; 38.6 1.6E+02 0.0056 24.1 10.7 106 326-447 17-125 (133)
64 1v25_A Long-chain-fatty-acid-C 35.7 8.8 0.0003 40.1 0.4 20 2-22 182-201 (541)
65 4gr5_A Non-ribosomal peptide s 35.5 13 0.00044 39.1 1.7 20 2-22 220-239 (570)
66 3rix_A Luciferase, luciferin 4 35.5 11 0.00037 39.5 1.1 20 2-22 196-215 (550)
67 2v7b_A Benzoate-coenzyme A lig 35.5 8.4 0.00029 40.0 0.2 20 2-22 189-208 (529)
68 1amu_A GRSA, gramicidin synthe 34.2 12 0.0004 39.5 1.1 20 2-22 188-207 (563)
69 3etc_A AMP-binding protein; ad 33.4 13 0.00044 39.4 1.3 20 2-22 231-250 (580)
70 4dg8_A PA1221; ANL superfamily 32.0 13 0.00043 39.9 0.9 20 2-22 170-189 (620)
71 3c5e_A Acyl-coenzyme A synthet 31.7 12 0.00043 39.4 0.8 19 2-21 212-230 (570)
72 1ry2_A Acetyl-coenzyme A synth 28.9 15 0.00052 39.6 0.9 20 2-22 268-287 (663)
73 3ol3_A Putative uncharacterize 28.5 2.1E+02 0.0071 23.5 7.5 53 140-192 46-100 (107)
74 1pg4_A Acetyl-COA synthetase; 28.3 14 0.00048 39.7 0.5 20 2-22 262-281 (652)
75 3tsy_A Fusion protein 4-coumar 26.9 24 0.00083 39.8 2.1 20 2-22 231-250 (979)
76 2m0n_A Putative uncharacterize 26.5 1.6E+02 0.0054 24.4 6.4 53 140-192 43-100 (112)
77 3mwb_A Prephenate dehydratase; 22.6 2.7E+02 0.0091 27.1 8.5 63 320-388 178-253 (313)
78 2qmw_A PDT, prephenate dehydra 20.4 3.7E+02 0.013 25.5 8.8 61 321-387 168-239 (267)
79 1vfg_A A-adding enzyme, poly A 20.3 1.7E+02 0.0058 29.2 6.7 69 129-204 150-226 (390)
No 1
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=6.6e-110 Score=896.86 Aligned_cols=464 Identities=33% Similarity=0.608 Sum_probs=423.1
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCeeEEEEecccccccCCCcEEeeCccccccC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKAGFKVMAASAFPLQG 79 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~ 79 (484)
|++|||||+|++|+||+|+++++.+++ ++.++..+++++ |.++ .||.|+|++++.+.+|++|+|+|++|++.++
T Consensus 103 f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~~S~~~~~- 177 (581)
T 4epl_A 103 ISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYR- 177 (581)
T ss_dssp EEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTTSCEEECHHHHHHT-
T ss_pred EEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCCCceeeechhhhhh-
Confidence 789999999999999999999998654 455666677776 8888 8999998899999999999999999999998
Q ss_pred CCc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011497 80 SSN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPC 156 (484)
Q Consensus 80 ~~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~ 156 (484)
|.+ ++ + ++...+++|.+++.++|+.+++||||||||.++++|.+|+++||++|+++++.|+++|++||+||++|+++
T Consensus 178 s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~dI~~gtl~ 257 (581)
T 4epl_A 178 NPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLS 257 (581)
T ss_dssp STTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 654 33 2 34567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCC-CccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccc
Q 011497 157 LDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDY 235 (484)
Q Consensus 157 ~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~-~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y 235 (484)
++++++++|++|++.+ +|+|++|++|+++|++. +|.|++++|||||++|+||++|+|++|++++++|+|++|+++.+|
T Consensus 258 ~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y 336 (581)
T 4epl_A 258 NRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDY 336 (581)
T ss_dssp TTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSCEEECCE
T ss_pred cCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCccccCce
Confidence 9999999999999999 79999999999999985 699999999999999999999999999999999999999999999
Q ss_pred ccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCceEEEEeccCCceeeeeeCCEEE
Q 011497 236 FASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVK 315 (484)
Q Consensus 236 ~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~ 315 (484)
+||||++|+|+++.+++++..|+++|+.+||||||+++. +.+++++|+++|||+|++|||||||.+||||||+||+|+
T Consensus 337 ~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~ 414 (581)
T 4epl_A 337 GSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVK 414 (581)
T ss_dssp EETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEE
T ss_pred eccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEE
Confidence 999999999999999888889999999999999999865 345678999999999999999999999999999999999
Q ss_pred EeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccc
Q 011497 316 VVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTK 392 (484)
Q Consensus 316 v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~ 392 (484)
|+||+|++|+|+|+||.++ ++|||++|++|++||.+|+++|.+ +|++|.+||+++|.++.||||++|||+.+.
T Consensus 415 v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~hyv~~wE~~~~--- 490 (581)
T 4epl_A 415 VIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEISGE--- 490 (581)
T ss_dssp EEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSCEEEEEEEESSC---
T ss_pred EecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCCcEEEEEeecCC---
Confidence 9999999999999999998 999999999999999999987766 899999999999877779999999999642
Q ss_pred cCCCHHHHHHHHHHHHHHh-ChhHHHhhhcCCCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCccc--CCHHHHHHH
Q 011497 393 LRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIV--RNREIVEFM 469 (484)
Q Consensus 393 ~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~--~~~~~~~~l 469 (484)
++.+.+++||..||++| |++|+.+|..++|+|++|++|++|+|.+|+++++++|++.+|+|+|||+ ++++++++|
T Consensus 491 --~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L 568 (581)
T 4epl_A 491 --TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQIL 568 (581)
T ss_dssp --CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTTCHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCCCHHHHHHH
Confidence 45678999999999999 9999999998999999999999999999999999999999999999999 999999999
Q ss_pred hccceEEEe
Q 011497 470 EGCSLVTVR 478 (484)
Q Consensus 470 ~~~~~~~~~ 478 (484)
+++|++++.
T Consensus 569 ~~~v~~~~~ 577 (581)
T 4epl_A 569 CENVVSSYF 577 (581)
T ss_dssp HTTEEEEEE
T ss_pred Hhccccccc
Confidence 999999875
No 2
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=1e-108 Score=890.83 Aligned_cols=473 Identities=32% Similarity=0.607 Sum_probs=417.3
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS 80 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 80 (484)
|++|||||+|++|+||+|+++++.+++ ++.++..+++++ .|.++.||.|++.+++.+.+|++|+|+|++|+++++ +
T Consensus 104 f~~SSGTT~gk~K~IP~t~~~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~~s~~~~~-s 179 (609)
T 4b2g_A 104 FLTSSGTSAGERKLMPTIQEELDRRQM--LYSLLMPVMNLY-VPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYK-S 179 (609)
T ss_dssp EEEEEEEETTEEEEEEECTTHHHHHHH--HHHHHHHHHHHH-SCCGGGSEEEECCCCCCCEECTTSCEEECHHHHHHT-S
T ss_pred EEeCCCCCCCCceeeecCHHHHHHHHH--HHHHHHHHHHhc-CCcccCCCeEEEcccCCcccCCCCcccccchhhhhc-c
Confidence 689999999999999999999999665 688888887776 577788999998899999999999999999999998 6
Q ss_pred Cc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497 81 SN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL 157 (484)
Q Consensus 81 ~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~ 157 (484)
.+ ++ + .|...|++|.+++.++|+.+++||||||||.++++|+.|+++|+++++++++.|+++|++||+||++|++++
T Consensus 180 ~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~dI~~gtl~~ 259 (609)
T 4b2g_A 180 EHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIRTGTLSP 259 (609)
T ss_dssp HHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred chhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 44 33 2 567789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a 237 (484)
+++++++|.+|++.+ +|+|++|++|+++|++.+|.|++++|||||++|+||++|+|++|++++++|+|++|+++.+|+|
T Consensus 260 ~it~~~~r~a~~~~l-sp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~~p~~~~~Y~A 338 (609)
T 4b2g_A 260 KITDPSVRNCVAGVL-KPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYAS 338 (609)
T ss_dssp TCCCHHHHHHTTTTC-CCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTSCCEECCEEEC
T ss_pred CCCCHHHHHHHhcCC-CcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCCCccccCcccc
Confidence 999999999999999 7999999999999998779999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcC---cccCCCceeecccccCCceEEEEeccCCceeeeeeCCEE
Q 011497 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK---NEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIV 314 (484)
Q Consensus 238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~---~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV 314 (484)
|||++|+|+++.|+++...|+++|+.+||||||+++.+ .+.+++++|+++|||+|++|||||||.+||||||+||+|
T Consensus 339 SEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~~~~~~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v 418 (609)
T 4b2g_A 339 SECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVGDIL 418 (609)
T ss_dssp SSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSCCCSSSCCCCEEGGGCCTTCEEEEEEECTTSCCSEEEEEEE
T ss_pred cceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccccccCCCCccccHhHcCCCCeEEEehhhhhhhhheecCCEE
Confidence 99999999999998877889999999999999987631 024568899999999999999999999999999999999
Q ss_pred EEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCcc
Q 011497 315 KVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCT 391 (484)
Q Consensus 315 ~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~ 391 (484)
+|+||+|++|+|+|+||.++ +.|||++|++|++||.+|++.|.+ +|++|.+||+++|.++.||||++|||+.....
T Consensus 419 ~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~-~g~~l~eft~~~d~~~~p~Hyv~~wEl~~~~~ 497 (609)
T 4b2g_A 419 RVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLRE-VNTSVVEYTSFADTKTIPGHYVIYWELLVKDS 497 (609)
T ss_dssp EEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGG-TTEEEEEEEEEEECSSSSCEEEEEEEEEESCG
T ss_pred EEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhc-cCCeEEEEEEecCCCCCCCcEEEEEEEecccc
Confidence 99999999999999999998 999999999999999999976656 89999999999887777899999999962100
Q ss_pred ccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHHHHh
Q 011497 392 KLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFME 470 (484)
Q Consensus 392 ~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~ 470 (484)
..+++++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|++.+|+|+|||+++++++++|+
T Consensus 498 ~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~~~~~~~~~L~ 577 (609)
T 4b2g_A 498 ANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLD 577 (609)
T ss_dssp GGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC----------------CCSSCC--CCHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcccCCHHHHHHHH
Confidence 0234668999999999999999999999 545999999999999999999999999999999999999999999999999
Q ss_pred ccceEEEec
Q 011497 471 GCSLVTVRL 479 (484)
Q Consensus 471 ~~~~~~~~~ 479 (484)
++|++++.-
T Consensus 578 ~~v~~~~~s 586 (609)
T 4b2g_A 578 SRVVSSHFS 586 (609)
T ss_dssp TTEEEEEEC
T ss_pred hcccccccC
Confidence 999998763
No 3
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=5.6e-109 Score=891.61 Aligned_cols=469 Identities=31% Similarity=0.623 Sum_probs=374.3
Q ss_pred CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497 1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS 80 (484)
Q Consensus 1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~ 80 (484)
|++|||||+|++|+||+|+++++.+++ ++.++..+++++ .|.++.||.|++++.+.+.+|++|+|+|++|+++++ +
T Consensus 98 F~~SSGTT~g~~K~IP~T~e~l~~~~~--~~~~~~~~~~~~-~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~s~~~~~-~ 173 (581)
T 4eql_A 98 FLLSSGTSGGAQKMMPWNNKYLDNLTF--IYDLRMQVITKH-VKGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFK-S 173 (581)
T ss_dssp EEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH-CCSCTTSEEEECCCCCCCEECTTSCEEECHHHHHHT-S
T ss_pred EEeCCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHHhc-CCccccCCEEEEeccCCcccCCCCeeecccchhhhh-c
Confidence 789999999999999999999999765 678888877776 578888999999999999999999999999999998 5
Q ss_pred Cc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497 81 SN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL 157 (484)
Q Consensus 81 ~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~ 157 (484)
.+ ++ + .|...|++|.+++.++|+.+++||||||||.++++|+.|+++|+++|+++++.|+++|++||+||++|++++
T Consensus 174 ~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI~~gtl~~ 253 (581)
T 4eql_A 174 DYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSN 253 (581)
T ss_dssp HHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred chhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 44 33 2 667789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497 158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA 237 (484)
Q Consensus 158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a 237 (484)
+++++++|.++...|..|||++|++|+++|++.+|.|++++|||||++|+||+||+|++|++++++|+|++|+++++|+|
T Consensus 254 ~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y~A 333 (581)
T 4eql_A 254 WVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGS 333 (581)
T ss_dssp TCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTTCCEECCEEEC
T ss_pred cCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCCCccccCcccc
Confidence 99999999999999955999999999999998779999999999999999999999999999999999999999999999
Q ss_pred CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCceEEEEeccCCceeeeeeCCEEEEe
Q 011497 238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVV 317 (484)
Q Consensus 238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~v~ 317 (484)
|||++|+|+++.|+++...|+++|+.+||||||+++. +++++++++|||.|++|||||||.+||||||+||+|+|+
T Consensus 334 SEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~----~~~~~v~l~eVe~G~~YelViTt~~GL~RYr~GD~v~v~ 409 (581)
T 4eql_A 334 SETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGG----DKNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVT 409 (581)
T ss_dssp SSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTT----CCSSCEEGGGCCTTCEEEEEEECSSSCCSEECCEEEEEE
T ss_pred ccceeeeccCCCCCcccCceeecCCcEEEEEEecccc----CCCcEeCHHHcCCCceEEEEEeeccceeeEEcCCEEEEc
Confidence 9999999999999887778889999999999999853 357899999999999999999999999999999999999
Q ss_pred eeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec-Cc---
Q 011497 318 DFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE-GC--- 390 (484)
Q Consensus 318 g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~-~~--- 390 (484)
||++++|+|+|+||.++ ++|||++|++|++||.+|++.|.+ +|++|.+||+++|.++.|+||++|||++. ++
T Consensus 410 ~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~-~g~~l~eft~~~~~~~~p~Hy~~~wel~~~~~~~~ 488 (581)
T 4eql_A 410 GFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEK 488 (581)
T ss_dssp EEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC---------------CEEEECSSSSBEEEEECC---------
T ss_pred ccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhh-cCCEEEEEEEecCCCCCCCeEEEEEEEeccccccc
Confidence 99999999999999998 999999999999999999965546 89999999999987777899999999852 00
Q ss_pred --cccCCCHHHHHHHHHHHHHHhChhHHHhh-hcCCCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccCCHHHHH
Q 011497 391 --TKLRDSVAILRRCCSSLEDAFGSIYKVQR-DRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVE 467 (484)
Q Consensus 391 --~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R-~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~ 467 (484)
....++++.+++||..||++||++|+.+| ..++|+|++|++|++|+|.+|+++++++|++.||||+|||++++++++
T Consensus 489 ~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~~~gQ~K~PR~~~~~~~~~ 568 (581)
T 4eql_A 489 ETAQFELDEEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQ 568 (581)
T ss_dssp ------CCHHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC------------------------------------
T ss_pred ccccCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCcCCCcccCCHHHHH
Confidence 00123457899999999999999999999 555999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEEe
Q 011497 468 FMEGCSLVTVR 478 (484)
Q Consensus 468 ~l~~~~~~~~~ 478 (484)
+|+++|++++.
T Consensus 569 ~L~~~v~~~~~ 579 (581)
T 4eql_A 569 VLETCVVAKFF 579 (581)
T ss_dssp --------CEE
T ss_pred HHHhcchheee
Confidence 99999998764
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.50 E-value=1.1e-12 Score=136.64 Aligned_cols=201 Identities=15% Similarity=0.169 Sum_probs=125.6
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCce-eEEeecCCCCCCCCcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg-~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
.++|+.| .+|| ....++++++.+| ++++ +.||+||+ ..++...+. ...+.. +.......|.+++++
T Consensus 205 ~~~lr~i---~~gGe~l~~~~~~~~~~~~g-~~v~-~~YG~TE~~~~~~~~~~~--~~~g~~-~~~~~~~v~i~d~~~-- 274 (436)
T 3qov_A 205 ETTLKTL---VIGAEPHTDEQRRKIERMLN-VKAY-NSFGMTEMNGPGVAFECQ--EQNGMH-FWEDCYLVEIIDPET-- 274 (436)
T ss_dssp SSSCCEE---EEESSCCCHHHHHHHHHHHT-SEEE-EEEEEGGGTEEEEEEECT--TCSSEE-ECTTTEEEEEECTTT--
T ss_pred cCCccEE---EEeCCcCCHHHHHHHHHHhC-ccEE-ecCcchhhcCCeeEEecC--CCCeeE-EccCceEEEEEECCC--
Confidence 4677754 3333 3556678888785 8998 99999997 332322222 222444 343456788888654
Q ss_pred cccCCCceeecccccCCceEEEEeccCC----ceeeeeeCCEEEEeeeeCC----CcEE-EEeeeCCC---cceeecCHH
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTYR----GFYRYRLGDIVKVVDFYNS----SPQV-EFVMRAPK---SSFEIISER 343 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~~----GLyRYr~GDvV~v~g~~~~----~P~i-~F~gR~~~---i~gEkl~e~ 343 (484)
+++ +..|+.+||+||+.. .+.||+|||++++..-.|. .|++ .|+||.++ +.|+++++.
T Consensus 275 -----g~~-----~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~ 344 (436)
T 3qov_A 275 -----GEP-----VPEGEIGELVLTTLDREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPM 344 (436)
T ss_dssp -----CSB-----CSTTCCEEEEEEESSCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHH
T ss_pred -----CCC-----CCCCCceEEEEeccCcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHH
Confidence 333 458999999999752 2678999999999764321 4566 99999998 889999999
Q ss_pred HHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCC
Q 011497 344 DLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGE 423 (484)
Q Consensus 344 ~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~ 423 (484)
+|++++.+. .++.- .+.+..+........+++|+.. +. ...+....+++.+.+.+.| +.|.
T Consensus 345 eiE~~l~~~-------p~v~~-~~vv~~~~~~~~~~l~a~v~~~-~~--~~~~~~~~~~l~~~l~~~l-~~~~------- 405 (436)
T 3qov_A 345 QVEKILVQF-------PELGS-NYLITLETVNNQDEMIVEVELS-DL--STDNYIELEKIRRDIIRQL-KDEI------- 405 (436)
T ss_dssp HHHHHHTTC-------TTEEE-EEEEEEEEETTEEEEEEEEEEC-TT--CCCCHHHHHHHHHHHHHHH-HHHH-------
T ss_pred HHHHHHHhC-------cCcCC-cEEEEEEcCCCCcEEEEEEEEc-Cc--cccchhhHHHHHHHHHHHH-HHhc-------
Confidence 999888743 23221 2333322211234566888886 31 1111223444556666666 1111
Q ss_pred CCCcEEEEeCCChHHH
Q 011497 424 ISPLSVSIVKPGTFDR 439 (484)
Q Consensus 424 l~p~~v~~v~~gtf~~ 439 (484)
--|..|.+|+.+.|++
T Consensus 406 ~~p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 406 LVTPKVKLVKKGSLPQ 421 (436)
T ss_dssp SSCCEEEEECTTCCC-
T ss_pred CCceEEEEeCCCcccC
Confidence 2456899999888774
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.48 E-value=4.6e-12 Score=132.32 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCce-e--EEeecCCCCCCCCcceeccCCceEEEeeecCCcCc
Q 011497 200 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASEC-Y--VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 200 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg-~--~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
+++|+.|.+-...-....++++++.+| ++++ +.||+||+ . +++..... . .+.. +.....++|++++++
T Consensus 211 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~-~~YG~TE~~g~~~~~~~~~~--~-~g~~-~~~~~~~~~i~d~~~--- 281 (443)
T 2y4o_A 211 ESSLKIGIFGAEPWTQALRNEVETRVG-IDAL-DIYGLSEVMGPGVACECVET--K-DGPV-IWEDHFYPEIIDPVT--- 281 (443)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHT-CEEE-EEEEETTTTEEEEEEECTTT--C-CSEE-ECTTTEEEEEECTTT---
T ss_pred cCCceEEEECCCcCCHHHHHHHHHHhC-cCEE-eccCchhhcCCeEEeccCCC--C-CceE-EccCCeEEEEEcCCC---
Confidence 478875522211114567788887775 8888 99999994 3 44433211 1 1333 344556789988653
Q ss_pred ccCCCceeecccccCCceEEEEeccCCc----eeeeeeCCEEEEeeee-C-CCcEE-EEeeeCCC---cceeecCHHHHH
Q 011497 277 EAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFY-N-SSPQV-EFVMRAPK---SSFEIISERDLM 346 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~~YeLVvTt~~G----LyRYr~GDvV~v~g~~-~-~~P~i-~F~gR~~~---i~gEkl~e~~v~ 346 (484)
+++ +..|+.+||+||+... +.||+|||++++.. . + ..|+| .|+||.++ +.|+++++.+|+
T Consensus 282 ----g~~-----~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~-~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE 351 (443)
T 2y4o_A 282 ----GEV-----LPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLP-PTARAMRRLAKITGRSDDMLIVRGVNVFPSQIE 351 (443)
T ss_dssp ----CCB-----CCTTCCEEEEEEESSCSSSCCSSEEEEEEECEEC-CSSSSSCEECCCCEESSCCEEETTEEECHHHHH
T ss_pred ----CCC-----CCCCCceEEEEeCCCcccChhheeecCCEEEEcC-CCCCCccccCccccccCCeEEECCEEECHHHHH
Confidence 333 3489999999997643 57999999999986 3 2 34788 89999998 789999999999
Q ss_pred HHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec--CccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCC
Q 011497 347 SAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE--GCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEI 424 (484)
Q Consensus 347 ~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~--~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l 424 (484)
+++.+. .++.- .+.+..+........+++|+... +. .......+++.+.+.+.| .. ..-
T Consensus 352 ~~l~~~-------p~V~~-~~vv~~~~~~~~~~~~a~v~~~~~~~~---~~~~~~~~~l~~~l~~~l-------~~-~~~ 412 (443)
T 2y4o_A 352 EIVVAL-------PLLSG-QFQITLSRDGHMDRLDLAVELRSEAAA---SVTDGERAALARELQHRI-------KT-MVG 412 (443)
T ss_dssp HHHHTS-------TTEEE-EEEEEEEEETTEEEEEEEEEECHHHHT---TCCHHHHHHHHHHHHHHH-------HH-HTC
T ss_pred HHHHhC-------cCcCc-cEEEEEecCCCCceEEEEEEECCcccc---cchhhHHHHHHHHHHHHH-------HH-HhC
Confidence 888743 23221 23333221111245567888753 10 011223344455555555 21 111
Q ss_pred CCcEEEEeCCChHH
Q 011497 425 SPLSVSIVKPGTFD 438 (484)
Q Consensus 425 ~p~~v~~v~~gtf~ 438 (484)
-|.+|.+|+.+.|+
T Consensus 413 ~p~~v~~v~~~~lP 426 (443)
T 2y4o_A 413 VSSGVTVLAAGGIP 426 (443)
T ss_dssp CCCEEEEECTTCSC
T ss_pred CceEEEEeCCCccc
Confidence 35678889877776
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.48 E-value=1.7e-12 Score=135.37 Aligned_cols=202 Identities=13% Similarity=0.058 Sum_probs=124.1
Q ss_pred CCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCce-e--EEeecCCCCCCCCcceeccCCceEEEeeecCCcCc
Q 011497 200 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASEC-Y--VGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 200 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg-~--~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
+++++.|.+-...-....++++++.+| ++++ ..||+||+ . ++++.... . .+.. +.....++|++++++
T Consensus 209 ~~~lr~i~~gGe~l~~~~~~~~~~~~g-~~v~-~~YG~TE~~g~~~~~~~~~~--~-~g~~-~~~~~~~~~i~d~~~--- 279 (437)
T 2y27_A 209 QSSLRIGIFGAEPWTNDMRVAIEQRMG-IDAV-DIYGLSEVMGPGVASECVET--K-DGPT-IWEDHFYPEIIDPET--- 279 (437)
T ss_dssp GSSCCEEEEESSCCCHHHHHHHHHHHT-SEEE-EEEEETTTTEEEEEECCTTT--C-SSCE-ECTTTEEEEEECTTT---
T ss_pred cCCeeEEEEcCccCCHHHHHHHHHHHC-cCEE-ecCCchhhcCCeeEEecCCC--C-Ccee-EccCceEEEEEcCCC---
Confidence 578885532211114566778887775 8988 99999994 2 45432211 1 1333 344556889998653
Q ss_pred ccCCCceeecccccCCceEEEEeccCCc----eeeeeeCCEEEEeeeeC-CCcEE-EEeeeCCC---cceeecCHHHHHH
Q 011497 277 EAVGEETVDFSGVEIGKMYEVVVTTYRG----FYRYRLGDIVKVVDFYN-SSPQV-EFVMRAPK---SSFEIISERDLMS 347 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~~YeLVvTt~~G----LyRYr~GDvV~v~g~~~-~~P~i-~F~gR~~~---i~gEkl~e~~v~~ 347 (484)
+++ +..|+.+||+||+... +.||+|||++++....+ ..|++ .|+||.++ +.|+++++.+|++
T Consensus 280 ----g~~-----~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~ 350 (437)
T 2y27_A 280 ----GEV-----LPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEE 350 (437)
T ss_dssp ----CCB-----CCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHH
T ss_pred ----CCC-----CCCCCccEEEEecCCcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHH
Confidence 333 3489999999997643 67999999999976322 46888 89999998 7899999999998
Q ss_pred HHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcCCCCCc
Q 011497 348 AMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPL 427 (484)
Q Consensus 348 av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~ 427 (484)
++.+. .++.- .+.+..+........+++|+...+. ..+....+++.+.+.+.| +.|. --|.
T Consensus 351 ~l~~~-------p~V~~-~~vv~~~~~~~~~~l~a~v~~~~~~---~~~~~~~~~l~~~l~~~l-~~~~-------~~p~ 411 (437)
T 2y27_A 351 QLLKQ-------RALAP-HYQIVLTKEGPLDVLTLNVEPCPET---APDTAAIQVAKQALAYDI-KSLI-------GVTA 411 (437)
T ss_dssp HHTTC-------TTBCS-CCEEEEEEETTEEEEEEEECBCTTT---TTCHHHHHHHHHHHHHHH-HHHH-------CCCE
T ss_pred HHHhC-------cCcCc-cEEEEEeecCCCceEEEEEEECCCc---cchhhhHHHHHHHHHHHH-HHhc-------CCce
Confidence 88753 22211 2333222111234566888875420 011122334445555555 1111 1355
Q ss_pred EEEEeCCChHH
Q 011497 428 SVSIVKPGTFD 438 (484)
Q Consensus 428 ~v~~v~~gtf~ 438 (484)
.|.+|+.+.|+
T Consensus 412 ~v~~v~~~~lP 422 (437)
T 2y27_A 412 VINVLPVNGIE 422 (437)
T ss_dssp EEEECCTTCSC
T ss_pred EEEEeCCCCcc
Confidence 78888877765
No 7
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.89 E-value=5.8e-08 Score=103.03 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=83.9
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCC--CCCCCCcceeccCCceEEEeeecCC
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDI--AQPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~--~~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
..++|+++ .+|+ .....+++++.+| ++++ +.||.||+.+...... ...+. ......|+. -.+.++.++
T Consensus 266 ~~~~lr~~---~~gg~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~-~~G~p~~~~-~~~i~d~~~ 338 (503)
T 4fuq_A 266 TTGHMRLF---ISGSAPLLADTHREWSAKTG-HAVL-ERYGMTETNMNTSNPYDGDRVPG-AVGPALPGV-SARVTDPET 338 (503)
T ss_dssp TTTTCCEE---EECSSCCCHHHHHHHHHHHS-CCEE-ECCEETTTEECBCCCSSSCCCTT-EEEEBCTTC-EEEEECTTT
T ss_pred chhhcEEE---EECCCCCCHHHHHHHHHHhC-CCcc-ceEcccccCcccccCCCCCCcCC-ccccCCCCe-EEEEEECCC
Confidence 35677744 4444 3444566666666 7888 9999999765331111 11111 122223333 345565432
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Cceee--------------eeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFYR--------------YRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLyR--------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
++. +..|+.+||+|+.. .|.|. |||||++++.. .-.+.|+||.|+
T Consensus 339 -------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~dd~i 402 (503)
T 4fuq_A 339 -------GKE-----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RGYVHILGRGKDLV 402 (503)
T ss_dssp -------CCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TCEEEECCSSTTCE
T ss_pred -------CCC-----CcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CCcEEEEecCCCEE
Confidence 333 45899999999864 33322 99999999832 348999999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~ 351 (484)
++|+++...+|++++.+
T Consensus 403 k~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 403 ITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp EETTEEECHHHHHHHHHT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 89999999999998874
No 8
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=98.85 E-value=3e-08 Score=106.81 Aligned_cols=107 Identities=11% Similarity=0.064 Sum_probs=67.8
Q ss_pred cccCCceEEEEeccC---Cc----------------------eeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceee
Q 011497 288 GVEIGKMYEVVVTTY---RG----------------------FYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEI 339 (484)
Q Consensus 288 ele~G~~YeLVvTt~---~G----------------------LyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEk 339 (484)
++..|+.+||+|+.. .| ...|||||++++. . -.+.|+||.++ +.|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d--d---G~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH--E---NELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE--T---TEEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE--C---CEEEEEcCccceEEECCEe
Confidence 356899999999874 22 2269999999885 1 25899999999 88999
Q ss_pred cCHHHHHHHHHHHHHHhccccCceEEEEEEe--ecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHHHHHh
Q 011497 340 ISERDLMSAMESFQMMLRNVMAVEIVEFAGY--TNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF 411 (484)
Q Consensus 340 l~e~~v~~av~~~~~~~~~~~g~~l~~f~~~--~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ld~~L 411 (484)
+++.+|++++..... ++...+.+++ .+. .....+++++.... ..+....+++.+.+.+.|
T Consensus 468 v~p~eIE~~l~~~~~------~v~~~~~~v~~~~~~--~~~~~~~~v~~~~~----~~~~~~~~~l~~~l~~~l 529 (590)
T 3kxw_A 468 HYPQDIEFSLMHSPL------HHVLGKCAAFVIQEE--HEYKLTVMCEVKNR----FMDDVAQDNLFNEIFELV 529 (590)
T ss_dssp THHHHHHHHHHHSGG------GGGEEEEEEEEEEET--TEEEEEEEEEESCT----TCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCc------cccCccEEEEEecCC--CCceEEEEEEeccc----cccchhHHHHHHHHHHHH
Confidence 999999999854332 2322123322 232 12445678877542 112233344555555555
No 9
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.79 E-value=1.3e-07 Score=100.57 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=79.0
Q ss_pred cCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEee---cCCC----CCCCCcceeccCCceEEEee
Q 011497 199 LWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGIN---LDIA----QPPQTTRFVMLPTAAYFEFL 269 (484)
Q Consensus 199 lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~---~~~~----~~~~~~~~~l~~~~~ffEFi 269 (484)
-.|+|+.+ +.+|. ......++.+.+++++++ .+||.||+.+.+. .... .... ......|+. -.+.+
T Consensus 262 ~~~~lr~~--~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~vG~p~~~~-~~~i~ 336 (521)
T 3l8c_A 262 KMPALTHF--YFDGEELTVSTARKLFERFPSAKII-NAYGPTEATVALSAIEITREMVDNYTRL-PIGYPKPDS-PTYII 336 (521)
T ss_dssp TCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEEECHHHHHHCSSC-EEEEECTTS-CEEEE
T ss_pred cCccceEE--EEecccCCHHHHHHHHHHCCCceEE-eCcCccHHhhhhceeecccccccCCCcc-ccccccCCC-EEEEE
Confidence 35777744 23333 345567777788889999 9999999743221 1100 0000 111122332 23444
Q ss_pred ecCCcCcccCCCceeecccccCCceEEEEeccC---Ccee-----------------eeeeCCEEEEeeeeCCCcEEEEe
Q 011497 270 PFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 270 p~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-----------------RYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
+.+ +. ++..|+.+||+|+.. .|.| -|+|||++++.. .-.+.|+
T Consensus 337 d~~--------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~----dG~l~~~ 399 (521)
T 3l8c_A 337 DED--------GK-----ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE----DNILLYG 399 (521)
T ss_dssp CTT--------SC-----BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS----SSCEEEE
T ss_pred CCC--------cC-----CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC----CCeEEEe
Confidence 422 22 256899999999874 2322 399999999843 3468999
Q ss_pred eeCCC---cceeecCHHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
||.++ +.|+++++.+|++++.+
T Consensus 400 GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 400 GRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp EEGGGBCC-----CBHHHHHHHHHT
T ss_pred CcccceEeECCEEeCHHHHHHHHHc
Confidence 99998 88999999999998874
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.74 E-value=2.7e-07 Score=98.72 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=81.9
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC---CCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~---~~~~~~l~~~~~ffEFip~~~ 273 (484)
.++|+.+ ..|| .....+++++.+| ++++ ++||.||+.+.+........ ..... ..++..-...++.+
T Consensus 297 l~~lr~~---~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~-p~~~~~~~~i~d~~- 369 (539)
T 1mdb_A 297 LSSLQVL---QVGGAKFSAEAARRVKAVFG-CTLQ-QVFGMAEGLVNYTRLDDPEEIIVNTQGK-PMSPYDESRVWDDH- 369 (539)
T ss_dssp CTTCCEE---EEESSCCCHHHHTTHHHHTC-SEEE-EEEECTTSCEEECCTTSCHHHHHHCCCE-ESSTTCEEEEECTT-
T ss_pred ccceeEE---EEcCCCCCHHHHHHHHHHhC-CcEE-EEEcCCCCcccccCCCCcHHhcCCCCCc-ccCCCceEEEECCC-
Confidence 4778754 3333 3445566666675 8888 99999998665532111000 00111 12222224444422
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
++. +..|+.+||+|+.. .|-| .|||||++++.. .-.+.|+||.++
T Consensus 370 -------~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~i 433 (539)
T 1mdb_A 370 -------DRD-----VKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----DGYIVVEGRAKDQI 433 (539)
T ss_dssp -------SCB-----CCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEEGGGCE
T ss_pred -------CCC-----CcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----CCcEEEeccccceE
Confidence 222 55899999999864 2221 399999999842 246999999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~ 351 (484)
++|++++..+|++++.+
T Consensus 434 k~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 434 NRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp ECSSCEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 88999999999988874
No 11
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.71 E-value=2.7e-07 Score=99.92 Aligned_cols=129 Identities=19% Similarity=0.259 Sum_probs=84.5
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC-CCcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP-QTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~-~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
.++|+.| .+|| .....+++++.+| ++++ ++||.||+.+.+...+..+. ........|+. -.+.++.+
T Consensus 340 l~~lr~i---~~gGe~l~~~~~~~~~~~~g-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~p~~~~-~v~ivd~~--- 410 (580)
T 3etc_A 340 FSTLKYA---VVAGEPLNPEVFNRFLEFTG-IKLM-EGFGQTETVVTIATFPWMEPKPGSIGKPTPGY-KIELMDRD--- 410 (580)
T ss_dssp CTTCCEE---EECSSCCCHHHHHHHHHHHS-CCCE-EEECCTTSSCCEECCTTSCCCTTCCBEECTTC-EEEEECTT---
T ss_pred CccceEE---EEccCCCCHHHHHHHHHHhC-CeEe-cccccccccceeecCCCCCCCCCccccCCCCC-EEEEECCC---
Confidence 4778744 4443 3444566666675 8888 99999998543322221111 11223334443 35556533
Q ss_pred cccCCCceeecccccCCceEEEEeccCC----ceee-----------------eeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTYR----GFYR-----------------YRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~~----GLyR-----------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
++. +.+|+.+||+|++.. ++.+ |||||++++.. .-.+.|+||.|+
T Consensus 411 -----g~~-----~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~----dG~l~~~GR~dd 476 (580)
T 3etc_A 411 -----GRL-----CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE----DGYLWFVGRADD 476 (580)
T ss_dssp -----SCB-----CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEESSS
T ss_pred -----CCC-----CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC----CCcEEEEecCCC
Confidence 232 558999999998642 3433 99999998842 347899999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 011497 335 ---SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 ---i~gEkl~e~~v~~av~~ 351 (484)
+.|+++.+.+|+++|.+
T Consensus 477 ~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 477 IIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp CEEETTEEECHHHHHHHHTT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 12
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.64 E-value=1.4e-06 Score=94.88 Aligned_cols=130 Identities=14% Similarity=0.184 Sum_probs=82.3
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC---CCcceeccCCceEEEeeecC
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~---~~~~~~l~~~~~ffEFip~~ 272 (484)
-.++|+.| ..|| .....+++++.++ ++++ +.||.||+.+.......... ......+.++. -...++.+
T Consensus 300 ~l~~lr~i---~~gGe~l~~~~~~~~~~~~~-~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~~i~d~~ 373 (617)
T 3rg2_A 300 QLASLKLL---QVGGARLSATLAARIPAEIG-CQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD-EVWVADAE 373 (617)
T ss_dssp TTTTCCEE---EEESSCCCHHHHHHHHHHTC-SEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC-EEEEECTT
T ss_pred cCCCccEE---EEcCCcCCHHHHHHHHHHhC-CcEE-EEeccCcceeecccCCCcccccccCCCccCCCCc-eEEEECCC
Confidence 35778755 3333 3445566666665 8888 99999998764422111100 00111112222 23344422
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
++. +..|+.+||+|+.. .|-| -|||||++++.. .-.+.|+||.|+
T Consensus 374 --------~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----dG~l~~~GR~dd~ 436 (617)
T 3rg2_A 374 --------GNP-----LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----EGYITVQGREKDQ 436 (617)
T ss_dssp --------SCB-----CCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEECSSE
T ss_pred --------CCC-----CCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----CceEEEEeecCCE
Confidence 333 45899999999865 2322 299999999842 347999999998
Q ss_pred --cceeecCHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~ 351 (484)
++|+++...+|++++.+
T Consensus 437 iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 437 INRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp EEETTEEEEHHHHHHHHTT
T ss_pred EEECCEEeCHHHHHHHHHh
Confidence 99999999999988875
No 13
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.56 E-value=3.3e-07 Score=98.20 Aligned_cols=131 Identities=11% Similarity=0.082 Sum_probs=66.1
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC---CCcceeccCCceEEEeeecCCc
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP---QTTRFVMLPTAAYFEFLPFDME 274 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~---~~~~~~l~~~~~ffEFip~~~~ 274 (484)
.++|+.|. .+|. .....+++++.++ ++++ ..||.||+.+.+........ ......+.+ ..-.+.++.+
T Consensus 306 ~~~lr~i~--~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~-~~~~~i~d~~-- 378 (544)
T 3o83_A 306 IQSLKLLQ--VGGASFPESLARQVPEVLN-CKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISS-DDEIKIVDEQ-- 378 (544)
T ss_dssp HTTCCEEE--EESSCCCHHHHTHHHHHHC-SEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCT-TCEEEEECTT--
T ss_pred CCcceEEE--EcCCCCCHHHHHHHHHHhC-CcEE-eeeccccccceeecCCCchhhccCCCceecCC-CcEEEEECCC--
Confidence 35677542 2332 3455566777775 8888 99999998654422111100 001111122 2234555522
Q ss_pred CcccCCCceeecccccCCceEEEEeccCC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---
Q 011497 275 KNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK--- 334 (484)
Q Consensus 275 ~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~--- 334 (484)
++. +..|+.+||+|+..+ |. -.|||||++++.. .-.+.|+||.++
T Consensus 379 ------~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik 443 (544)
T 3o83_A 379 ------YRE-----VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DGNLRVVGRIKDQIN 443 (544)
T ss_dssp ------SCB-----CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TSCEEEEEEEC----
T ss_pred ------CCC-----CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CCCEEEEeecCCEEE
Confidence 222 458999999998752 22 2399999999842 347899999998
Q ss_pred cceeecCHHHHHHHHHHH
Q 011497 335 SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|++++.+.
T Consensus 444 ~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 444 RGGEKIASEEIEKLILLH 461 (544)
T ss_dssp ------------------
T ss_pred eCCEEECHHHHHHHHHhC
Confidence 899999999999998864
No 14
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.52 E-value=2.4e-06 Score=90.59 Aligned_cols=134 Identities=13% Similarity=0.104 Sum_probs=86.4
Q ss_pred cccCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEe---ecCCC---CCCCCcceeccCCceEEEe
Q 011497 197 SKLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIA---QPPQTTRFVMLPTAAYFEF 268 (484)
Q Consensus 197 ~~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i---~~~~~---~~~~~~~~~l~~~~~ffEF 268 (484)
....|.++.+ +.+|. .....+++++.+++++++ ..||.||+.+.+ ..... ...........|+. -.+.
T Consensus 256 ~~~~~~l~~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i 331 (511)
T 3e7w_A 256 QDLLPHADTF--MFCGEVLPVSVAKALLERFPKAKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDM-NIFI 331 (511)
T ss_dssp TTTCTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTC-EEEE
T ss_pred cccCCcccEE--EEecCCCCHHHHHHHHHHCCCcEEE-eCcccchheeeeeEEeccccccccCCcCCCcceeCCC-EEEE
Confidence 3456788754 23333 355667788888889999 999999964321 11100 00000112223333 2445
Q ss_pred eecCCcCcccCCCceeecccccCCceEEEEeccC--------------------CceeeeeeCCEEEEeeeeCCCcEEEE
Q 011497 269 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY--------------------RGFYRYRLGDIVKVVDFYNSSPQVEF 328 (484)
Q Consensus 269 ip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~--------------------~GLyRYr~GDvV~v~g~~~~~P~i~F 328 (484)
++.+ ++. +..|+.+||+|+.. .|-+.|||||++++ . .-.+.|
T Consensus 332 ~d~~--------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~----dG~l~~ 393 (511)
T 3e7w_A 332 MDEE--------GQP-----LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-Q----DGQIFC 393 (511)
T ss_dssp ECTT--------SCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-E----TTEEEE
T ss_pred ECCC--------CCC-----CCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-c----CCeEEE
Confidence 5432 333 45899999999853 23346999999987 2 247899
Q ss_pred eeeCCC---cceeecCHHHHHHHHHHH
Q 011497 329 VMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 329 ~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+||.++ +.|+++++.+|++++.+.
T Consensus 394 ~GR~~d~ik~~G~~v~p~eIE~~l~~~ 420 (511)
T 3e7w_A 394 QGRLDFQIKLHGYRMELEEIEFHVRQS 420 (511)
T ss_dssp EEESSSEEEETTEEEEHHHHHHHHHHS
T ss_pred EccccCEEEECCEEeCHHHHHHHHHhC
Confidence 999999 889999999999988853
No 15
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.50 E-value=1.3e-06 Score=93.80 Aligned_cols=131 Identities=15% Similarity=0.071 Sum_probs=85.8
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCC-CCcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPP-QTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~-~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
+++|+.+ .+|+ ....++++++.+++++++ .+||.||+...+...+.... ........|+. -.+.+++++
T Consensus 308 l~~lr~i---~~gG~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~~~~~~-~~~i~d~~~-- 380 (548)
T 2d1s_A 308 LSNLVEI---ASGGAPLSKEVGEAVARRFNLPGVR-QGYGLTETTSAIIITPEGDDKPGASGKVVPLF-KAKVIDLDT-- 380 (548)
T ss_dssp CTTCCEE---EECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTCCBEECTTC-EEEEECTTT--
T ss_pred ccceeEE---EEcCccCCHHHHHHHHHHcCCCcee-eccccccccceeeecCcccCCCCCCCccCCCc-eEEEEeCCc--
Confidence 4778754 3343 355667788888888898 99999996432211211110 00112223333 356665432
Q ss_pred cccCCCceeecccccCCceEEEEeccCC---ce--------------eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---c
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 335 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL--------------yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i 335 (484)
++. +..|+.+||+|+..+ |. -.|||||++++.. .-.+.|+||.++ +
T Consensus 381 -----~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~~d~ik~ 446 (548)
T 2d1s_A 381 -----KKS-----LGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKHFFIVDRLKSLIKY 446 (548)
T ss_dssp -----CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEEEEGGGCBCB
T ss_pred -----Ccc-----CCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCeEEEeccccceEEE
Confidence 233 458999999998742 21 2499999999842 236899999998 8
Q ss_pred ceeecCHHHHHHHHHH
Q 011497 336 SFEIISERDLMSAMES 351 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~ 351 (484)
.|+++++.+|++++.+
T Consensus 447 ~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 447 KGYQVPPAELESVLLQ 462 (548)
T ss_dssp TTCCBCHHHHHHHHHT
T ss_pred CCEEECHHHHHHHHHh
Confidence 8999999999988874
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.48 E-value=2.5e-06 Score=90.81 Aligned_cols=116 Identities=12% Similarity=0.045 Sum_probs=74.4
Q ss_pred hhhHHHHHHHhCCCCccccccccCce-eEEeecCCC-CCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCC
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASEC-YVGINLDIA-QPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIG 292 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg-~~~i~~~~~-~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G 292 (484)
...++++++.+| ++++ .+||.||+ .+.+...+. .... ......|+. -.+.++.+ ++. +..|
T Consensus 314 ~~~~~~~~~~~g-~~i~-~~YG~TE~~~~~~~~~~~~~~~~-~~G~p~~~~-~~~i~d~~--------g~~-----~~~g 376 (529)
T 2v7b_A 314 REIGERFTAHFG-CEIL-DGIGSTEMLHIFLSNRAGAVEYG-TTGRPVPGY-EIELRDEA--------GHA-----VPDG 376 (529)
T ss_dssp HHHHHHHHHHHS-CCEE-EEEECTTTSSEEEECCTTCCCTT-SCCEECTTC-EEEEECTT--------SCB-----CCTT
T ss_pred HHHHHHHHHHhC-Ccee-eeEchhhcCceeeccccCCCccC-CcccCCCCC-EEEEECCC--------CCC-----CCCC
Confidence 455567777775 8888 99999997 333322211 1111 122233333 35666532 333 4589
Q ss_pred ceEEEEeccC---Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 293 KMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 293 ~~YeLVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
+.+||+|+.. .|.|+ |+|||++++.. .-.+.|+||.++ +.|++++..+|++++.+
T Consensus 377 ~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 377 EVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp SCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCBC----CBCHHHHHHHHTT
T ss_pred CccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCccCCeEEECCEEECHHHHHHHHHh
Confidence 9999999875 34443 89999998843 347899999998 88999999999988874
No 17
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=98.47 E-value=2.8e-06 Score=89.62 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=45.8
Q ss_pred CCceEEEEeccC---Cceee------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 291 IGKMYEVVVTTY---RGFYR------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 291 ~G~~YeLVvTt~---~GLyR------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
.|+.+||+|... .|-|. |+|||++++.. .-.+.|+||.++ ++|++++..+|++++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 577899999764 33222 99999999842 358999999998 89999999999988874
No 18
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.43 E-value=2.7e-06 Score=90.81 Aligned_cols=131 Identities=13% Similarity=0.104 Sum_probs=86.1
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE--EeecC----CC-CCCCCcceeccCCceEEEe
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD----IA-QPPQTTRFVMLPTAAYFEF 268 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~----~~-~~~~~~~~~l~~~~~ffEF 268 (484)
-.++|+.| .+|+ .....+++++.+++++++ +.||.||+.. +.... +. ..++ ......|+. -.+.
T Consensus 295 ~l~~lr~i---~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~~-~~~i 368 (536)
T 3ni2_A 295 DLSSLRMI---KSGGAPLGKELEDTVRAKFPQARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPG-ACGTVVRNA-EMKI 368 (536)
T ss_dssp CCTTCCEE---EEESSCCCHHHHHHHHHHCTTSEEE-EEEECGGGSSEEEECGGGSSSCCCCCTT-CCCEECSSC-EEEE
T ss_pred CCccceEE---EECCCCCCHHHHHHHHHHCCCCCcc-ccccccccchhhhcccccCCccccCCCC-CeeEeCCCc-EEEE
Confidence 45788754 3333 355567788888889999 9999999742 22211 10 0111 112223333 3566
Q ss_pred eecCCcCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeee
Q 011497 269 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMR 331 (484)
Q Consensus 269 ip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR 331 (484)
++.++ +.. +..|+.+||+|+.. .|-| .|||||++++.. .-.+.|+||
T Consensus 369 ~d~~~-------~~~-----~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR 432 (536)
T 3ni2_A 369 VDPET-------GAS-----LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD----DDELFIVDR 432 (536)
T ss_dssp ECTTT-------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred EeCCC-------CcC-----CCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC----CceEEEEec
Confidence 66443 333 45899999999854 2222 399999999842 347899999
Q ss_pred CCC---cceeecCHHHHHHHHHH
Q 011497 332 APK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 332 ~~~---i~gEkl~e~~v~~av~~ 351 (484)
.++ ++|++++..+|++++.+
T Consensus 433 ~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 433 LKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp CSCCEEETTEEECHHHHHHHHHT
T ss_pred ccceEEECCEEECHHHHHHHHHh
Confidence 998 88999999999988874
No 19
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=98.42 E-value=5e-06 Score=89.64 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=81.9
Q ss_pred CCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEeecCCC--CCCCCcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIA--QPPQTTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~--~~~~~~~~~l~~~~~ffEFip~~~~~ 275 (484)
.++|+.+. .+|. ....++++++.++ ++++ +.||.||+.+.+...+. ..+. ......|+. -.+.++.+
T Consensus 321 ~~~lr~i~--~gGe~l~~~~~~~~~~~~g-~~i~-~~YG~TE~~~~~~~~~~~~~~~~-~vG~p~~~~-~v~i~d~~--- 391 (570)
T 3c5e_A 321 FPHLQNCV--TVGESLLPETLENWRAQTG-LDIR-ESYGQTETGLTCMVSKTMKIKPG-YMGTAASCY-DVQIIDDK--- 391 (570)
T ss_dssp CTTCCEEE--EESSCCCHHHHHHHHHHHS-CCCE-EEEEETTTEEEEECCTTSCCCTT-CCCEECTTC-CEEEECTT---
T ss_pred cccceEEE--EcCCcCCHHHHHHHHHHhC-Cchh-hccchhhcccceecCcccccCCC-cccccCCCc-eEEEECCC---
Confidence 47787552 2332 3455567776675 8888 99999997553322211 1111 111123332 24555532
Q ss_pred cccCCCceeecccccCCceEEEEec-----cC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVT-----TY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK 334 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvT-----t~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~ 334 (484)
++. +..|+.+||+|+ .. .|.| .|+|||++++.. .-.+.|+||.++
T Consensus 392 -----g~~-----~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~----dG~l~~~GR~dd 457 (570)
T 3c5e_A 392 -----GNV-----LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE----DGYFQFMGRADD 457 (570)
T ss_dssp -----SCB-----CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEEEGGG
T ss_pred -----CCC-----CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC----CceEEEEecCCC
Confidence 333 458999999998 21 2322 299999998842 236899999998
Q ss_pred ---cceeecCHHHHHHHHHH
Q 011497 335 ---SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 ---i~gEkl~e~~v~~av~~ 351 (484)
+.|+++++.+|++++.+
T Consensus 458 ~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 458 IINSSGYRIGPSEVENALME 477 (570)
T ss_dssp CEEETTEEECHHHHHHHHHT
T ss_pred EEEECCEEECHHHHHHHHHh
Confidence 88999999999988875
No 20
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=98.36 E-value=3.2e-06 Score=89.70 Aligned_cols=120 Identities=18% Similarity=0.179 Sum_probs=73.5
Q ss_pred hhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC-CcceeccCCceEEEeeecCCcCcccCCCceeecccccCCc
Q 011497 215 SQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ-TTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGK 293 (484)
Q Consensus 215 ~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~-~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~ 293 (484)
....+++++.++ ++++ +.||.||+.+........... .......|+. -.+.++.+ +.++. .+..|+
T Consensus 286 ~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~~~-~~~i~d~~--------g~~~~--~~~~g~ 352 (505)
T 3nyq_A 286 VHDHERIAAATG-RRVI-ERYGMTETLMNTSVRADGEPRAGTVGVPLPGV-ELRLVEED--------GTPIA--ALDGES 352 (505)
T ss_dssp HHHHHHHHHHHS-CCCE-EEEEETTTEEEEECCTTSCCCTTCCCEECTTC-EEEEC-------------CCC--CCCSCC
T ss_pred HHHHHHHHHhcC-Ceee-cccchhhcccccccCCCCCCCCCCcccCCCCC-EEEEECCC--------CCCcc--cCCCCc
Confidence 344456666665 8888 999999986544322221110 0112223333 34555432 22221 133589
Q ss_pred eEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCC-C---cceeecCHHHHHHHHHH
Q 011497 294 MYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAP-K---SSFEIISERDLMSAMES 351 (484)
Q Consensus 294 ~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~-~---i~gEkl~e~~v~~av~~ 351 (484)
.+||+|+.. .|.| -|||||++++.. .-.+.|+||.+ + +.|+++...+|++++.+
T Consensus 353 ~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGRKATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp CEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEESSCCCEEETTEEECHHHHHHHHTT
T ss_pred eEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCCccCceEEeCCEEECHHHHHHHHHH
Confidence 999999864 2322 299999999842 34789999974 5 88999999999988874
No 21
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.34 E-value=1.6e-06 Score=92.79 Aligned_cols=131 Identities=14% Similarity=0.178 Sum_probs=74.6
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHH----hCC--CCccccccccCceeEEeecCC-C--CCCCCcceeccCCceEE
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYY----AGE--VPVLGGDYFASECYVGINLDI-A--QPPQTTRFVMLPTAAYF 266 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~----~g~--v~~~~~~y~aSEg~~~i~~~~-~--~~~~~~~~~l~~~~~ff 266 (484)
-++.|+.+ .+|+ .....+++++. ++. +.++ ..||.||+...+...+ . .... ......|+. -.
T Consensus 294 ~~~~lr~~---~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-~~G~p~~~~-~~ 367 (549)
T 3g7s_A 294 DWSYLKVF---ATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKST-TQGVPMSDI-EL 367 (549)
T ss_dssp CCTTCCEE---EEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTT-SCCEECTTC-EE
T ss_pred CccceeEE---EeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCC-CccccCCCC-EE
Confidence 36788754 3333 34444566655 543 8888 9999999643221111 1 0011 112223333 35
Q ss_pred EeeecCCcCcccCCCceeecccccCCceEEEEeccCC---ce------------------eeeeeCCEEEEeeeeCCCcE
Q 011497 267 EFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GF------------------YRYRLGDIVKVVDFYNSSPQ 325 (484)
Q Consensus 267 EFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL------------------yRYr~GDvV~v~g~~~~~P~ 325 (484)
+.++.++ +.. +..|+.+||+|+..+ |- -.|||||++++.. .-.
T Consensus 368 ~i~d~~~-------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~----dG~ 431 (549)
T 3g7s_A 368 KVISLED-------GRE-----LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDE----EGF 431 (549)
T ss_dssp EEECSSS-------CCE-----ECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECT----TSC
T ss_pred EEEeCCC-------CcC-----CCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcC----Cce
Confidence 6666443 333 458999999998642 21 1799999999842 347
Q ss_pred EEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 326 VEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 326 i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
+.|+||.|+ ++|+++...+|++++.+
T Consensus 432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 432 LHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp EEEEEEC------------CHHHHHHHTT
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHh
Confidence 999999998 89999999999988874
No 22
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.34 E-value=4.5e-06 Score=88.29 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=82.5
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN 276 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~ 276 (484)
.++|+.| ..|| .....+++++.+| ++++ +.||.||+.+.+...... .. ......++. -...++.+.
T Consensus 271 l~~lr~~---~~gG~~l~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~-~~-~~g~p~~~~-~~~i~~~~~--- 339 (504)
T 1t5h_X 271 LDSLRHV---TFAGATMPDAVLETVHQHLP-GEKV-NIYGTTEAMNSLYMRQPK-TG-TEMAPGFFS-EVRIVRIGG--- 339 (504)
T ss_dssp CTTCCEE---EECCTTCCHHHHHHHHHHCC-SEEE-EEEEETTTEEEEEEESCS-SS-SEEBCCTTC-CEEEECTTS---
T ss_pred CccccEE---EEcCCcCCHHHHHHHHHhcC-ccee-eeeccccccccccccCCC-CC-ccccCCCCC-ceeEEeccC---
Confidence 4778754 4444 3445567777776 7788 999999985444321111 11 111112222 233444321
Q ss_pred ccCCCceeecccccCCceEEEEec-cC---Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cc
Q 011497 277 EAVGEETVDFSGVEIGKMYEVVVT-TY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SS 336 (484)
Q Consensus 277 ~~~~~~~l~l~ele~G~~YeLVvT-t~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~ 336 (484)
...+ .+..|+.+||+|+ .. .|.|+ |||||++++.. .-.+.|+||.++ +.
T Consensus 340 --~~~~-----~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~~~GR~dd~ik~~ 408 (504)
T 1t5h_X 340 --GVDE-----IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVRILGRVDDMIISG 408 (504)
T ss_dssp --CTTC-----BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEGGGCEEET
T ss_pred --CCCC-----cCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEEEeCcccCEEEEC
Confidence 1112 3568999999998 32 45554 99999999853 236899999998 88
Q ss_pred eeecCHHHHHHHHHH
Q 011497 337 FEIISERDLMSAMES 351 (484)
Q Consensus 337 gEkl~e~~v~~av~~ 351 (484)
|+++...+|++++.+
T Consensus 409 G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 409 GENIHPSEIERVLGT 423 (504)
T ss_dssp TEEECHHHHHHHHTT
T ss_pred CEEECHHHHHHHHHh
Confidence 999999999988874
No 23
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=98.33 E-value=2.4e-06 Score=90.48 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=84.2
Q ss_pred ccCCCCceEEEEecCc--hhhhHHHHHHHhCCCCccccccccCceeEEe---ecCCC----CCCCCcceeccCCceEEEe
Q 011497 198 KLWPNVRYIKCVTTGS--MSQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIA----QPPQTTRFVMLPTAAYFEF 268 (484)
Q Consensus 198 ~lWP~L~~i~~~~~G~--~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i---~~~~~----~~~~~~~~~l~~~~~ffEF 268 (484)
...|+|+.+ +.+|. .....+++++.+++++++ ..||.||+.+.+ ..... .... ......++. -...
T Consensus 258 ~~~~~lr~~--~~~G~~l~~~~~~~~~~~~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~-~~G~~~~~~-~~~i 332 (512)
T 3fce_A 258 SMLPNMKTF--LFCGEVLPNEVARKLIERFPKATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSL-PVGYCKSDC-RLLI 332 (512)
T ss_dssp TTSTTCCEE--EECSSCCCHHHHHHHHHHCTTCEEE-EEECCGGGSSCSEEEECCHHHHHHCSSC-CCEEECTTC-EEEE
T ss_pred hhCccccEE--EEecCcCCHHHHHHHHHHCCCCEEE-eCcccChhhhheeeEEeccccccccCCC-ccccccCCc-EEEE
Confidence 346788854 22332 355567788888889999 999999974322 11110 0000 111122222 2344
Q ss_pred eecCCcCcccCCCceeecccccCCceEEEEeccC---Ccee-----------------eeeeCCEEEEeeeeCCCcEEEE
Q 011497 269 LPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-----------------RYRLGDIVKVVDFYNSSPQVEF 328 (484)
Q Consensus 269 ip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-----------------RYr~GDvV~v~g~~~~~P~i~F 328 (484)
++.+ +.. +..|+.+||+|+.. .|.| -|||||++++ . .-.+.|
T Consensus 333 ~d~~--------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~----dG~l~i 394 (512)
T 3fce_A 333 MKED--------GTI-----APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-E----NGLLFY 394 (512)
T ss_dssp ECSS--------SCB-----CCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-E----TTEEEE
T ss_pred ECCC--------CCC-----CCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-c----CCEEEE
Confidence 4422 333 45899999999854 2322 4999999977 2 247999
Q ss_pred eeeCCC---cceeecCHHHHHHHHHHH
Q 011497 329 VMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 329 ~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
+||.++ +.|+++++.+|++++.+.
T Consensus 395 ~GR~~d~ik~~G~~v~p~eIE~~l~~~ 421 (512)
T 3fce_A 395 NGRLDFQIKLHGYRMELEEIEHHLRAC 421 (512)
T ss_dssp EEEGGGCEEETTEEECHHHHHHHHHHS
T ss_pred ecccCCEEEECCEEECHHHHHHHHHhC
Confidence 999998 889999999999988753
No 24
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.33 E-value=1.6e-05 Score=87.05 Aligned_cols=226 Identities=13% Similarity=0.082 Sum_probs=119.4
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhC--CCCccccccccCceeEEeecC-CCC---CCCCcceeccCCceEEEeee
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAG--EVPVLGGDYFASECYVGINLD-IAQ---PPQTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g--~v~~~~~~y~aSEg~~~i~~~-~~~---~~~~~~~~l~~~~~ffEFip 270 (484)
.++|++| .+|| .....+.+++.+| +++++ +.||.||+...+-.. +.. .++ ......|+.. ...++
T Consensus 377 l~sLr~i---~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~-s~G~p~~g~~-v~i~d 450 (652)
T 1pg4_A 377 RSSLRIL---GSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAG-SATRPFFGVQ-PALVD 450 (652)
T ss_dssp CTTCCEE---EEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTT-CCBSBCTTCC-EEEEC
T ss_pred cCceEEE---EEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCC-ccccCcCCCe-EEEEC
Confidence 4777755 3333 2444566666666 38898 999999964322111 110 011 1111223322 33443
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC-----Ccee----------------eeeeCCEEEEeeeeCCCcEEEEe
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
.+ ++. +..|+.+||+|+.. .|.| -|+|||++++.. .-.+.|+
T Consensus 451 ~~--------g~~-----v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~i~ 513 (652)
T 1pg4_A 451 NE--------GHP-----QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWIT 513 (652)
T ss_dssp TT--------CCB-----CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEE
T ss_pred CC--------CCC-----cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CCcEEEE
Confidence 22 332 45799999999872 1221 299999999842 2368999
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCC 404 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~--~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~ 404 (484)
||.|+ +.|+++...+|+++|.+. .+ +.+.+|+. +.. .....+.||.+..+ ...+.+..+++.
T Consensus 514 GR~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~-~g~~l~a~Vv~~~~---~~~~~~~~~~l~ 580 (652)
T 1pg4_A 514 GRVDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHG---EEPSPELYAEVR 580 (652)
T ss_dssp EESSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETT-TEEEEEEEEEECTT---CCCCHHHHHHHH
T ss_pred ecCCCEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEEcCC-CCeEEEEEEEECCC---CCCCHHHHHHHH
Confidence 99998 889999999999998743 22 44555443 221 11234577877543 112222333444
Q ss_pred HHHHHHhChhHHHhhhcCCCCCcEEEEeCC------ChHH--HHHHHHHHcCCCCCCCCCCcccCCHHHHHHHhccc
Q 011497 405 SSLEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFD--RLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCS 473 (484)
Q Consensus 405 ~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------gtf~--~~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~~~~ 473 (484)
+.+.+.| +.| ..|-.|.+|+. |-.. .+++. ..+. ..+++.+--+.|++.++.+.+.+
T Consensus 581 ~~l~~~l-~~~--------~~P~~i~~v~~lP~T~sGKi~R~~L~~~--~~~~-~~~~~~~~~l~~p~~~~~~~~~~ 645 (652)
T 1pg4_A 581 NWVRKEI-GPL--------ATPDVLHWTDSLPKTRSGKIMRRILRKI--AAGD-TSNLGDTSTLADPGVVEKLLEEK 645 (652)
T ss_dssp HHHHHHT-CGG--------GCCSEEEECSCCCBCTTSCBCHHHHHHH--HHTC-----------CCTTHHHHHHHHH
T ss_pred HHHHHhC-CCC--------cCCeEEEEcCCCCCCCCccchHHHHHHH--HhCC-CCCCCCccccCCHHHHHHHHHHh
Confidence 4444444 112 34566666542 3222 22222 2222 13566677788999888887644
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.25 E-value=2.1e-06 Score=92.00 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=64.8
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEEeecCCCCCCC-CcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQ-TTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i~~~~~~~~~-~~~~~l~~~~~ffEFip~~~~~ 275 (484)
.++|+.| .+|| .....+++++.+|...++ ++||.||+...+...+..... .......|+. -.+.+++++
T Consensus 306 l~~lr~i---~~gG~~l~~~~~~~~~~~~~~~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~~~~~~-~~~i~d~~~-- 378 (550)
T 3rix_A 306 LSNLHEI---ASGGAPLSKEVGEAVAKRFHLPGIR-QGYGLTETTSAILITPEGDDKPGAVGKVVPFF-EAKVVDLDT-- 378 (550)
T ss_dssp CTTCCEE---EECSSCCCHHHHHHHHHHTTCSCCE-EEEECGGGSSEEEECCTTCCCTTEEEEECTTC-EEEEECTTT--
T ss_pred cccccEE---EEecCCCCHHHHHHHHHHcCCCccc-cccCcCccccceecCCCCCCCCCCcccccCCc-EEEEEeCCC--
Confidence 5778744 4444 345567777778744577 999999975433222221111 1122233333 356666543
Q ss_pred cccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---c
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---S 335 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i 335 (484)
++. +..|+.+||+|+.. .|.| .|||||++++.. .-.+.|+||.++ +
T Consensus 379 -----~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~ 444 (550)
T 3rix_A 379 -----GKT-----LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEHFFIVDRLKSLIKY 444 (550)
T ss_dssp -----CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCCEEEC---------
T ss_pred -----CcC-----CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----CceEEEEecchheeEE
Confidence 233 45899999999864 2221 399999999842 347899999998 8
Q ss_pred ceeecCHHHHHHHHHHH
Q 011497 336 SFEIISERDLMSAMESF 352 (484)
Q Consensus 336 ~gEkl~e~~v~~av~~~ 352 (484)
.|++++..+|++++.+.
T Consensus 445 ~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 445 KGYQVAPAELESILLQH 461 (550)
T ss_dssp -----------------
T ss_pred CCEEECHHHHHHHHHhC
Confidence 89999999999998864
No 26
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.24 E-value=7.4e-07 Score=94.41 Aligned_cols=129 Identities=12% Similarity=0.122 Sum_probs=69.2
Q ss_pred CCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCceeE--EeecCCCCCCCCcceeccCCceEEEeeecCCcCcc
Q 011497 200 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNE 277 (484)
Q Consensus 200 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~ 277 (484)
.+.|+.+ ..|+.....+++++.+++++++ +.||.||+.. ........ +. ......|+. -.+.++.+
T Consensus 271 l~~lr~~---~~~g~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~-~~-~~G~p~~~~-~~~i~d~~----- 338 (509)
T 3ivr_A 271 LASLRAV---TGLDTPETIERFEATCPNATFW-ATFGQSETSGLSTFAPYRDR-PK-SAGRPLFWR-TVAVVDAE----- 338 (509)
T ss_dssp GTTCCEE---EEECCHHHHHHHHHHCTTCEEE-EEEEEGGGTEEEEEEEGGGS-TT-SCCEECTTC-EEEEECTT-----
T ss_pred hhhhhee---cccCChHHHHHHHHhcCCCeEE-cccCccccccccccCccccC-CC-cccccCCCc-EEEEECCC-----
Confidence 3566644 4455557778888888889999 9999999743 22211111 11 122223333 34555532
Q ss_pred cCCCceeecccccCCceEEEEeccC---Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeC--CC---cc
Q 011497 278 AVGEETVDFSGVEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRA--PK---SS 336 (484)
Q Consensus 278 ~~~~~~l~l~ele~G~~YeLVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~--~~---i~ 336 (484)
++. +..|+.+||+|+.. .|.|+ |||||++++.. .-.+.|+||. ++ ++
T Consensus 339 ---~~~-----~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d~ik~~ 406 (509)
T 3ivr_A 339 ---DRP-----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKELIKTG 406 (509)
T ss_dssp ---SCB-----CCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC---------
T ss_pred ---CCC-----CCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcceeEEEC
Confidence 222 45899999999874 44444 99999999842 3479999998 65 88
Q ss_pred eeecCHHHHHHHHHHH
Q 011497 337 FEIISERDLMSAMESF 352 (484)
Q Consensus 337 gEkl~e~~v~~av~~~ 352 (484)
|++++..+|++++.+.
T Consensus 407 G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 407 GENVYPAEVEGALKQH 422 (509)
T ss_dssp ----------------
T ss_pred CEEECHHHHHHHHHhC
Confidence 9999999999988864
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.23 E-value=1.3e-05 Score=85.80 Aligned_cols=59 Identities=14% Similarity=0.063 Sum_probs=48.4
Q ss_pred ccCCceEEEEeccC---Cceee-------------eeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTY---RGFYR-------------YRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAM 349 (484)
Q Consensus 289 le~G~~YeLVvTt~---~GLyR-------------Yr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av 349 (484)
+..|+.+||+|... .|.|+ |||||++++ . .-.+.|+||.++ +.|++++..+|++++
T Consensus 406 ~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l 480 (576)
T 3gqw_A 406 VAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-L----DGYLYVTGRIKDLIIIRGRNIWPQDIEYIA 480 (576)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-E----TTEEEEEEETTTCEEETTEEECHHHHHHHH
T ss_pred CCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-E----CCEEEEEecCcceEEECCEEECHHHHHHHH
Confidence 45899999999875 34333 999999987 3 247999999998 889999999999888
Q ss_pred HHH
Q 011497 350 ESF 352 (484)
Q Consensus 350 ~~~ 352 (484)
.+.
T Consensus 481 ~~~ 483 (576)
T 3gqw_A 481 EQE 483 (576)
T ss_dssp TTS
T ss_pred HhC
Confidence 753
No 28
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.22 E-value=1.8e-05 Score=86.97 Aligned_cols=229 Identities=14% Similarity=0.102 Sum_probs=115.4
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhC--CCCccccccccCceeE--EeecC-CCC--CCCCcceeccCCceEEEee
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAG--EVPVLGGDYFASECYV--GINLD-IAQ--PPQTTRFVMLPTAAYFEFL 269 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g--~v~~~~~~y~aSEg~~--~i~~~-~~~--~~~~~~~~l~~~~~ffEFi 269 (484)
.+.|+++ .+|| .....+.+++.+| +++++ ..||.||+.. ..+.. ... .++ ......|+. -.+.+
T Consensus 383 l~sLr~i---~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~g-s~G~p~~g~-~v~i~ 456 (663)
T 1ry2_A 383 LKSLRCL---GSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPG-SASFPFFGI-DAVVL 456 (663)
T ss_dssp CTTCCEE---EECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTT-CCCEECTTC-CEEEE
T ss_pred cCceEEE---EEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCC-ccccCcCCC-eEEEE
Confidence 4677744 4444 2444566666665 38999 9999999642 22211 010 111 111122332 24455
Q ss_pred ecCCcCcccCCCceeecccccC-CceEEEEeccC-----Ccee----------------eeeeCCEEEEeeeeCCCcEEE
Q 011497 270 PFDMEKNEAVGEETVDFSGVEI-GKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVE 327 (484)
Q Consensus 270 p~~~~~~~~~~~~~l~l~ele~-G~~YeLVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~ 327 (484)
+.++ ++.+ .. |+.+||+|+.. .|.| .|+|||++++.. .-.+.
T Consensus 457 d~~~-------g~~v-----~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~----dG~l~ 520 (663)
T 1ry2_A 457 DPNT-------GEEL-----NTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK----DGYIW 520 (663)
T ss_dssp CSSS-------TTCE-----ECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT----TCCEE
T ss_pred cCCC-------CCcC-----CCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC----CCCEE
Confidence 4322 3333 35 89999999873 2222 399999999853 23689
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCC-CCCceEEEEEEeecCccccCC-CH---HH
Q 011497 328 FVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLE-SSPKKLMIFVEIREGCTKLRD-SV---AI 399 (484)
Q Consensus 328 F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~-~~~~~Y~l~vE~~~~~~~~~~-~~---~~ 399 (484)
|+||.|+ +.|+++...+|+++|.+. .+ +.+.+|+.-.. ......+.||.+..+...... +. +.
T Consensus 521 i~GR~dd~Ik~~G~rI~~~eIE~~l~~~-------p~--V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l 591 (663)
T 1ry2_A 521 ILGRVDDVVNVSGHRLSTAEIEAAIIED-------PI--VAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDELQDI 591 (663)
T ss_dssp ECSCTTSCBCSSSCCBCHHHHHHHHHSS-------TT--EEEEEEECCCCCTTSCCCEEEEEEC------------CCSH
T ss_pred EEeecCCEEEECCEEcCHHHHHHHHHhC-------CC--cceEEEEEEecCCCCeEEEEEEEEcCCCccccccchhHHHH
Confidence 9999998 889999999999988742 22 44555543211 111233567776532000000 00 11
Q ss_pred HHHHHHHHHHHhChhHHHhhhcCCCCCcEEEEeCC------ChHHHHHHHHHHcCCCC--CCCCCCcccCCHHHHHHHhc
Q 011497 400 LRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFDRLLQVAIEKGAPA--SQYKPPKIVRNREIVEFMEG 471 (484)
Q Consensus 400 l~~~~~~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------gtf~~~~~~~~~~G~~~--~Q~K~Pr~~~~~~~~~~l~~ 471 (484)
.+++.+.+.+.| .....|-+|.+|+. |- ..+..+.+=... .+++.+-.+.|++.++.+..
T Consensus 592 ~~~l~~~l~~~L---------~~~~~P~~i~~v~~lP~T~sGK---i~R~~L~~~~~~~~~~~~~~~~l~~p~~~~~~~~ 659 (663)
T 1ry2_A 592 KKHLVFTVRKDI---------GPFAAPKLIILVDDLPKTRSGK---IMRRILRKILAGESDQLGDVSTLSNPGIVRHLID 659 (663)
T ss_dssp HHHHHHHHHHHT---------CTTTSCSEEEECSCCCBCTTSC---BCHHHHHHSCC-------------CCHHHHHHHH
T ss_pred HHHHHHHHHHhC---------CCCcCCeEEEEcCCCCCCCccC---chHHHHHHHHcCCCCCCCCcccccCHHHHHHHHH
Confidence 222333333333 12346777777653 32 222222221112 26778888999999998866
No 29
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.21 E-value=3.6e-06 Score=85.51 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=45.8
Q ss_pred ccCCceEEEEeccC-CceeeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHH
Q 011497 289 VEIGKMYEVVVTTY-RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQM 354 (484)
Q Consensus 289 le~G~~YeLVvTt~-~GLyRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~ 354 (484)
+..++..|+++... ..-.-|||||++++.. . .+.|+||.|+ +.|++++..+|++++.....
T Consensus 210 ~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~---~--g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~ 274 (358)
T 4gs5_A 210 YGVDERGCLHISGAVTNGQTVQTNDLVEIHG---N--AFQWIGRADNVINSGGVKIVLDQIDQRIAAVFH 274 (358)
T ss_dssp EEECTTSEEEEESGGGTTCCEEEEEEEEECS---S--EEEEEEEGGGEEEETTEEEEHHHHHHHHHHHHH
T ss_pred EEecCcCceEEecccccCcceecCCcccccc---C--ceEEcccccCeEEECCEEECHHHHHHHHHHhcc
Confidence 34566678887653 1123589999999854 2 3889999998 88999999999998876543
No 30
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.07 E-value=9.7e-06 Score=86.14 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=75.8
Q ss_pred CCCCceEEEEecCch---hhhHHHHHHHhCCCCccccccccCceeE--EeecCC--CCCCCCcceeccCCceEEEeeecC
Q 011497 200 WPNVRYIKCVTTGSM---SQYCSKIKYYAGEVPVLGGDYFASECYV--GINLDI--AQPPQTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 200 WP~L~~i~~~~~G~~---~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~~--~~~~~~~~~~l~~~~~ffEFip~~ 272 (484)
.|+|+++ .+|+. ....+.+++. +++++ ++||.||+.. .+.... ..... ......++. -.+.++.+
T Consensus 283 ~~~lr~i---~~gGe~l~~~~~~~~~~~--~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~-~~G~~~~~~-~~~i~d~~ 354 (517)
T 3r44_A 283 APDFRYF---ITGGAPMPEALIKIYAAK--NIEVV-QGYALTESCGGGTLLLSEDALRKAG-SAGRATMFT-DVAVRGDD 354 (517)
T ss_dssp CTTCCEE---EECSSCCCHHHHHHHHHT--TCEEE-EEEECGGGTTCEEEECGGGTTTTTT-CCBEECTTE-EEEEECTT
T ss_pred CCcccEE---EECCCCCCHHHHHHHHhc--CCcEE-EeecccccccceeecCCccccccCC-CCCcCCCCe-EEEEECCC
Confidence 4677744 44442 3333444443 58898 9999999633 222111 11111 111112222 23333321
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---Ccee-------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC--
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY-------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK-- 334 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy-------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~-- 334 (484)
+.. +..| .+||+|+.. .|.| .|||||++++.. .-.+.|+||.|+
T Consensus 355 --------~~~-----~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~i 416 (517)
T 3r44_A 355 --------GVI-----REHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMI 416 (517)
T ss_dssp --------SCE-----ESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCE
T ss_pred --------CCC-----CCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEE
Confidence 333 2366 899999874 3433 399999999843 347899999998
Q ss_pred -cceeecCHHHHHHHHHH
Q 011497 335 -SSFEIISERDLMSAMES 351 (484)
Q Consensus 335 -i~gEkl~e~~v~~av~~ 351 (484)
++|+++...+|++++.+
T Consensus 417 k~~G~~v~p~eIE~~l~~ 434 (517)
T 3r44_A 417 ISGGENVYPAEIESVIIG 434 (517)
T ss_dssp EETTEEECHHHHHHHHTT
T ss_pred EECCEEECHHHHHHHHHh
Confidence 89999999999988874
No 31
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=97.96 E-value=6.9e-05 Score=80.57 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=78.0
Q ss_pred CCCCceEEEEecCchhhhHHHHHHHhCCCCccccccccCceeE--Eeec-CCCCCCC-CcceeccCCceEEEeeecCCcC
Q 011497 200 WPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV--GINL-DIAQPPQ-TTRFVMLPTAAYFEFLPFDMEK 275 (484)
Q Consensus 200 WP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~-~~~~~~~-~~~~~l~~~~~ffEFip~~~~~ 275 (484)
.++|+.+ ..|+.....+.++.+...++++ .+||.||+.+ .... ....... .......|+. -.+.++.+
T Consensus 292 ~~~lr~~---~~gG~~l~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~-~v~i~d~~--- 363 (563)
T 1amu_A 292 ILSIQTL---ITAGSATSPSLVNKWKEKVTYI-NAYGPTETTICATTWVATKETIGHSVPIGAPIQNT-QIYIVDEN--- 363 (563)
T ss_dssp CCSCSEE---EEESSCCCHHHHHHHTTTSEEE-EEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTE-EEEEECTT---
T ss_pred cccccEE---EEEEecCCHHHHHHHHhCCeEE-EEECcCHHhHhheeeecccccCCCCCcccceeCCC-EEEEECCC---
Confidence 3567644 4444333333334444448888 9999999643 2211 1111000 0111223332 23444422
Q ss_pred cccCCCceeecccccCCceEEEEeccCC---ce--------------------eeeeeCCEEEEeeeeCCCcEEEEeeeC
Q 011497 276 NEAVGEETVDFSGVEIGKMYEVVVTTYR---GF--------------------YRYRLGDIVKVVDFYNSSPQVEFVMRA 332 (484)
Q Consensus 276 ~~~~~~~~l~l~ele~G~~YeLVvTt~~---GL--------------------yRYr~GDvV~v~g~~~~~P~i~F~gR~ 332 (484)
++. +..|+.+||+|+..+ |. -.|+|||++++.. .-.+.|+||.
T Consensus 364 -----~~~-----~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~ 429 (563)
T 1amu_A 364 -----LQL-----KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRI 429 (563)
T ss_dssp -----SCB-----CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEG
T ss_pred -----cCC-----CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEeccc
Confidence 233 458999999998642 22 2699999998842 2368999999
Q ss_pred CC---cceeecCHHHHHHHHHH
Q 011497 333 PK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 333 ~~---i~gEkl~e~~v~~av~~ 351 (484)
++ +.|+++++.+|++++.+
T Consensus 430 ~d~Ik~~G~~V~p~eIE~~l~~ 451 (563)
T 1amu_A 430 DNQVKIRGHRVELEEVESILLK 451 (563)
T ss_dssp GGEEEETTEEEEHHHHHHHHTT
T ss_pred cCEEEECCEEeCHHHHHHHHHh
Confidence 98 88999999999988874
No 32
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=97.95 E-value=1.4e-05 Score=85.67 Aligned_cols=130 Identities=19% Similarity=0.238 Sum_probs=61.6
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeEEe---ecCCCCCCCCcceeccCCceEEEeeecCC
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVGI---NLDIAQPPQTTRFVMLPTAAYFEFLPFDM 273 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~i---~~~~~~~~~~~~~~l~~~~~ffEFip~~~ 273 (484)
.++|+.+ .+|+ + ....+++++. .+++++ ++||.||+.+.. +..+..... ......++. -...++.+.
T Consensus 293 ~~~lr~~---~~gG~~l~~~~~~~~~~~-~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~-~~G~p~~~~-~~~i~d~~~ 365 (562)
T 3ite_A 293 APHLVYL---GVGGEKMTPRTQQIWSSS-DRVALV-NVYGPTEVTIGCSAGRILPDSDTR-CIGHPLGDS-VAHVLAPGS 365 (562)
T ss_dssp STTCCEE---EEESSCCCHHHHHHHTTC-SSCEEE-EEECCGGGCSCSEEEECCTTSCTT-EEEEECTTC-EEEEECTTS
T ss_pred cCceEEE---EEecCCCCHHHHHHHhhC-CCcEEE-EeeccchheeeeeeeeecCCCCCc-cccccCCCC-eEEEEeCCC
Confidence 4677744 3343 2 2222333332 348888 999999964322 112211111 112222332 244454332
Q ss_pred cCcccCCCceeecccccCCceEEEEeccC---Ccee---------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC-
Q 011497 274 EKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY---------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK- 334 (484)
Q Consensus 274 ~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy---------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~- 334 (484)
++. +.+|+.+||+|... .|-| .|+|||++++.. .-.+.|+||.++
T Consensus 366 -------~~~-----~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~ 429 (562)
T 3ite_A 366 -------NEH-----VKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQ 429 (562)
T ss_dssp -------SCB-----CCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC---
T ss_pred -------CCC-----CCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCE
Confidence 222 55899999999764 2322 599999999832 347899999998
Q ss_pred --cceeecCHHHHHHHHHHH
Q 011497 335 --SSFEIISERDLMSAMESF 352 (484)
Q Consensus 335 --i~gEkl~e~~v~~av~~~ 352 (484)
+.|++++..+|+++|.+.
T Consensus 430 Ik~~G~~v~p~eIE~~l~~~ 449 (562)
T 3ite_A 430 VKVRGQRLELGEVSEVIRSL 449 (562)
T ss_dssp --------------------
T ss_pred EeECcEEECHHHHHHHHHhc
Confidence 889999999999998865
No 33
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.90 E-value=2e-05 Score=90.33 Aligned_cols=132 Identities=12% Similarity=0.108 Sum_probs=70.0
Q ss_pred CCCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeE--EeecC----CCCCCCCcceeccCCceEEEeee
Q 011497 200 WPNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYV--GINLD----IAQPPQTTRFVMLPTAAYFEFLP 270 (484)
Q Consensus 200 WP~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~~~----~~~~~~~~~~~l~~~~~ffEFip 270 (484)
.++|++| .+|+ .....+++++.+++++++ +.||.||+.. ..... +............|+. -.+.++
T Consensus 343 l~~lr~~---~~gg~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~-~~~i~d 417 (979)
T 3tsy_A 343 LSSIRVV---KSGAAPLGKELEDAVNAKFPNAKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA-EMKIVD 417 (979)
T ss_dssp CTTCCEE---EESSCCCCSSHHHHHHHHCTTCEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSC-EEEEEC
T ss_pred ccceEEE---EEcCCCCCHHHHHHHHHHCCCCeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCc-EEEEEe
Confidence 4677744 4444 345567788888889999 9999999743 22211 1000000112223333 355666
Q ss_pred cCCcCcccCCCceeecccccCCceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCC
Q 011497 271 FDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAP 333 (484)
Q Consensus 271 ~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~ 333 (484)
+++ ++. +..|+.+||+|+.. .|-| -|||||++++.. .-.+.|+||.|
T Consensus 418 ~~~-------~~~-----~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l~~~GR~d 481 (979)
T 3tsy_A 418 PDT-------GDS-----LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDELFIVDRLK 481 (979)
T ss_dssp TTS-------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCEEEEEESC
T ss_pred CCC-------CCC-----CCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceEEEecCCC
Confidence 443 333 45899999999854 2322 299999999842 23789999999
Q ss_pred C---cceeecCHHHHHHHHHHH
Q 011497 334 K---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 334 ~---i~gEkl~e~~v~~av~~~ 352 (484)
+ ++|+++...+|+++|.+.
T Consensus 482 d~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 482 ELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp C---------------------
T ss_pred CEEEECCEEECHHHHHHHHHhC
Confidence 8 899999999999988864
No 34
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.87 E-value=1.7e-05 Score=85.27 Aligned_cols=131 Identities=19% Similarity=0.160 Sum_probs=63.7
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeE--Eee-cCCCCCCCC--cceeccCCceEEEeeec
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYV--GIN-LDIAQPPQT--TRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~--~i~-~~~~~~~~~--~~~~l~~~~~ffEFip~ 271 (484)
.++|+.+ .+|+ + .....++.+.+++++++ .+||.||+.. ... ......... ......|+. -...++.
T Consensus 325 ~~~lr~~---~~gG~~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~v~i~d~ 399 (570)
T 4gr5_A 325 FEGVRYA---ITGGEPASVPHVAKARRDHPALRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGK-RAYVLDD 399 (570)
T ss_dssp GTTCSEE---EEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTE-EEEEECT
T ss_pred CCCceEE---EEecccCCHHHHHHHHHhCCCcEEE-EeechhhheeeeeeeeecccccCCCccccceeeCCC-EEEEECC
Confidence 4677754 3333 2 34556777778789999 9999999633 221 111100000 012222332 2344442
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccC---Ccee----------------------eeeeCCEEEEeeeeCCCcEE
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGFY----------------------RYRLGDIVKVVDFYNSSPQV 326 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GLy----------------------RYr~GDvV~v~g~~~~~P~i 326 (484)
+ ++. +..|+.+||+|... .|-| -|||||++++.. .-.+
T Consensus 400 ~--------~~~-----~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~----dG~l 462 (570)
T 4gr5_A 400 D--------LKP-----AANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRA----DGVL 462 (570)
T ss_dssp T--------SCB-----CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECT----TSCE
T ss_pred C--------CCC-----CCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECC----CCeE
Confidence 2 222 55899999999763 2222 499999999842 3479
Q ss_pred EEeeeCCC---cceeecCHHHHHHHHHHH
Q 011497 327 EFVMRAPK---SSFEIISERDLMSAMESF 352 (484)
Q Consensus 327 ~F~gR~~~---i~gEkl~e~~v~~av~~~ 352 (484)
.|+||.++ +.|+++++.+|+++|.+.
T Consensus 463 ~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 463 EYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp EEEEC------------------------
T ss_pred EEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 99999998 889999999999998864
No 35
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.85 E-value=6.7e-05 Score=81.81 Aligned_cols=131 Identities=13% Similarity=0.102 Sum_probs=80.5
Q ss_pred CCCCceEEEEecCc--h-hhhHHHHHHHhCCCCccccccccCceeEE--e-ecCCCCCC--CCcceeccCCceEEEeeec
Q 011497 200 WPNVRYIKCVTTGS--M-SQYCSKIKYYAGEVPVLGGDYFASECYVG--I-NLDIAQPP--QTTRFVMLPTAAYFEFLPF 271 (484)
Q Consensus 200 WP~L~~i~~~~~G~--~-~~y~~~l~~~~g~v~~~~~~y~aSEg~~~--i-~~~~~~~~--~~~~~~l~~~~~ffEFip~ 271 (484)
.++|+.| ..|| + .....++.+.+++++++ +.||.||+.+. . ...+.... ........++. -...++.
T Consensus 275 l~~lr~v---~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~i~d~ 349 (620)
T 4dg8_A 275 LGGLRQL---LTGGDILSVPHVRRALLRHPRLHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGT-AVLLLDE 349 (620)
T ss_dssp GTTCSEE---EEESSCCCHHHHHHHHHHCTTCEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTE-EEEEECT
T ss_pred CCCccEE---EEEeCcCCHHHHHHHHHhCCCeEEE-eeEchhhhhhheEEEeccccccCCCCCCceecccCc-EEEEECc
Confidence 4677754 4344 2 24445555556779999 99999997432 1 11111000 00111122332 2444543
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccC---Cce---------------------eeeeeCCEEEEeeeeCCCcEEE
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY---RGF---------------------YRYRLGDIVKVVDFYNSSPQVE 327 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~GL---------------------yRYr~GDvV~v~g~~~~~P~i~ 327 (484)
+ +..+ +.+|+.+||+|... .|- -.|||||+++... .-.+.
T Consensus 350 ~--------~~~~----~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~----dG~l~ 413 (620)
T 4dg8_A 350 H--------GQEI----AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDE----QGRLR 413 (620)
T ss_dssp T--------SCBC----CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECT----TSCEE
T ss_pred c--------CCCC----CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECC----CCeEE
Confidence 2 1111 45899999999643 221 2499999999832 34799
Q ss_pred EeeeCCC---cceeecCHHHHHHHHHH
Q 011497 328 FVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 328 F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
|+||.|+ ++|+++...+|++++.+
T Consensus 414 ~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 414 FIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred EEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 9999998 99999999999998885
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.80 E-value=5e-05 Score=76.80 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=64.5
Q ss_pred CCCceEEEEecCc---hhhhHHHHH-HHhCCCCccccccccCceeE-EeecCCCCCCCCcceec----cCCceEEEeeec
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIK-YYAGEVPVLGGDYFASECYV-GINLDIAQPPQTTRFVM----LPTAAYFEFLPF 271 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~-~~~g~v~~~~~~y~aSEg~~-~i~~~~~~~~~~~~~~l----~~~~~ffEFip~ 271 (484)
++|+.| .+|| ....+++++ +.+|+++++ +.||.||+.. +.. .+..+. |..+. .|+ ...+.++.
T Consensus 231 ~~lr~i---~~gGe~l~~~~~~~~~~~~~p~~~v~-~~YG~TE~~~~~~~-~~~~~~--G~~~~~~~~~~~-~~v~ivD~ 302 (369)
T 3hgu_A 231 QSLAQI---TLGGTELNLDEIKFIASEILPDCEFS-ASYGSTSALGVSRS-LLITSE--SQQVIYDSFSPF-ITYDVVDS 302 (369)
T ss_dssp HHCSEE---EEESSCCCHHHHHHHHHHTCTTSEEE-EEEEEGGGTEEEEE-CCBCTT--CSSCEEECCTTT-EEEEEECT
T ss_pred CCeeEE---EECCccCCHHHHHHHHHHhCCCcEEE-cccCchhhhcceec-cccccC--CCcccccCCCCC-eEEEEECC
Confidence 456643 3333 356667888 888789999 9999999643 321 111111 22211 333 45677765
Q ss_pred CCcCcccCCCceeecccccCCceEEEEeccCC---ceeeeeeCCEEEEeeeeC
Q 011497 272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTYR---GFYRYRLGDIVKVVDFYN 321 (484)
Q Consensus 272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~---GLyRYr~GDvV~v~g~~~ 321 (484)
++ +++ |..|+.+||+||+.. .+.||++||+.+.....+
T Consensus 303 ~~-------g~~-----vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~ 343 (369)
T 3hgu_A 303 IT-------AQT-----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVS 343 (369)
T ss_dssp TT-------CSB-----CCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCST
T ss_pred CC-------CcC-----CCCCCceEEEEEEcCcccccccccCCceEEEecCCC
Confidence 43 334 448999999999863 289999999988766543
No 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.73 E-value=0.00014 Score=85.98 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=80.6
Q ss_pred CCCceEEEEecCc---hhhhHHHHHHHhCCCCccccccccCceeEE--e-ecCCCCCC--CCcceeccCCceEEEeeecC
Q 011497 201 PNVRYIKCVTTGS---MSQYCSKIKYYAGEVPVLGGDYFASECYVG--I-NLDIAQPP--QTTRFVMLPTAAYFEFLPFD 272 (484)
Q Consensus 201 P~L~~i~~~~~G~---~~~y~~~l~~~~g~v~~~~~~y~aSEg~~~--i-~~~~~~~~--~~~~~~l~~~~~ffEFip~~ 272 (484)
++|+.| ..|| ......++.+.++++.++ ++||.||+.+. . ........ ........++.. ...++.+
T Consensus 720 ~~lr~~---~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~i~d~~ 794 (1304)
T 2vsq_A 720 KGLRCI---LFGGERASVPHVRKALRIMGPGKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNAS-VYILNEQ 794 (1304)
T ss_dssp HTCSEE---EEESSCCCHHHHHHHHHHHCTTCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEE-EEEECTT
T ss_pred CCccEE---EEecCCCCHHHHHHHHHhCCCCEEE-EeEChhHHhHHheeeeccCccccCCCCCCceeeCCCE-EEEECCC
Confidence 566644 3343 234556666777878898 99999997542 2 11110000 001112233332 2223321
Q ss_pred CcCcccCCCceeecccccCCceEEEEeccC---C--------------------ceeeeeeCCEEEEeeeeCCCcEEEEe
Q 011497 273 MEKNEAVGEETVDFSGVEIGKMYEVVVTTY---R--------------------GFYRYRLGDIVKVVDFYNSSPQVEFV 329 (484)
Q Consensus 273 ~~~~~~~~~~~l~l~ele~G~~YeLVvTt~---~--------------------GLyRYr~GDvV~v~g~~~~~P~i~F~ 329 (484)
.++ +..|+.+||+|... . |--.|||||+++... .-.++|+
T Consensus 795 --------~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~ 857 (1304)
T 2vsq_A 795 --------SQL-----QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP----DGTIEYA 857 (1304)
T ss_dssp --------SCB-----CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT----TSCEEEE
T ss_pred --------cCC-----CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC----CCeEEEE
Confidence 233 34899999999753 1 222699999999843 2379999
Q ss_pred eeCCC---cceeecCHHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
||.|+ |+|+++...+|+.++.+
T Consensus 858 GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 858 GRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp EEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred cCCCCEEEECCEeeCHHHHHHHHHh
Confidence 99998 99999999999998875
No 38
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=97.43 E-value=0.00021 Score=76.24 Aligned_cols=57 Identities=32% Similarity=0.314 Sum_probs=42.9
Q ss_pred CceEEEEeccC---Ccee--------------eeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHH
Q 011497 292 GKMYEVVVTTY---RGFY--------------RYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMES 351 (484)
Q Consensus 292 G~~YeLVvTt~---~GLy--------------RYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~ 351 (484)
|+.+||+|+.. .|.| -|||||++++.. .-.+.|+||.++ +.|++++..+|++++.+
T Consensus 381 ~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 36899999864 3322 299999999843 237999999999 88999999999999886
Q ss_pred H
Q 011497 352 F 352 (484)
Q Consensus 352 ~ 352 (484)
.
T Consensus 457 ~ 457 (541)
T 1v25_A 457 H 457 (541)
T ss_dssp -
T ss_pred C
Confidence 4
No 39
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=95.89 E-value=0.019 Score=47.49 Aligned_cols=90 Identities=13% Similarity=0.144 Sum_probs=55.7
Q ss_pred eCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHHH
Q 011497 331 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSL 407 (484)
Q Consensus 331 R~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~l 407 (484)
|.|+ ++|.++++.+|+++|.+. .++.- .+++..+.........+++|.... ...+...++++++.+
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~-------p~v~~-~~vv~v~~~~~~~~~~~~V~~~~~---~~~~~~~~~~l~~~i 70 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF-------KELGS-DYLITLETAESNDEMTVEVELSQL---FTDDYGRLQALTREI 70 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC-------TTEEE-EEEEEEEEETTEEEEEEEEEECTT---CCCCHHHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC-------CCccc-ceEEEEeccccceeEEEEEEEeec---cccccchhhhhHHHH
Confidence 6777 899999999999988743 23211 233333221112344578887643 123455666777777
Q ss_pred HHHhChhHHHhhhcCCCCCcEEEEeCCChHHH
Q 011497 408 EDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 439 (484)
Q Consensus 408 d~~Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~~ 439 (484)
.+++ +....+ ++.|.+|++|++++
T Consensus 71 ~~~l-------~~~~gv-~~~v~~v~~~~lPr 94 (109)
T 3lax_A 71 TRQL-------KDEILV-TPRVKLVPKGALPK 94 (109)
T ss_dssp HHHH-------HHHHSS-CCEEEEECTTCSCC
T ss_pred HHHH-------HHHhCC-ccceEEEcCCeecC
Confidence 7777 221224 45799999999883
No 40
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=95.50 E-value=0.034 Score=46.21 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=54.7
Q ss_pred eeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHHHH
Q 011497 330 MRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSS 406 (484)
Q Consensus 330 gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~~ 406 (484)
||.++ ++|.++++.+|++++.+. + ++. ..|++..+.....-..++++|. .+. ...+....+++.+.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p------~v~-~~~~v~v~~~~~~e~l~~~ve~-~~~--~~~~~~~~~~l~~~ 69 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K------ELG-SDYLITLETAESNDEMTVEVEL-SQL--FTDDYGRLQALTRE 69 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T------TEE-EEEEEEEEEETTEEEEEEEEEE-CTT--CCCCHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C------CcC-CcEEEEEEcCCCceEEEEEEEE-cCc--cccchhHHHHHHHH
Confidence 68888 899999999999998863 2 221 1454433221112345689998 431 00112344556666
Q ss_pred HHHHhChhHHHhhhcCCCCCcEEEEeCCChHHH
Q 011497 407 LEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDR 439 (484)
Q Consensus 407 ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~gtf~~ 439 (484)
+.+.+ +..-.+.+ +|.+|++|++++
T Consensus 70 i~~~l-------~~~~~~~~-~v~~v~~~~lPr 94 (109)
T 3gxs_A 70 ITRQL-------KDEILVTP-RVKLVPKGALPK 94 (109)
T ss_dssp HHHHH-------HHHHSSCC-EEEEECTTCSCC
T ss_pred HHHHH-------HHhhCCce-EEEEECCCCccC
Confidence 66666 32223544 899999999774
No 41
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=94.82 E-value=0.088 Score=54.35 Aligned_cols=40 Identities=20% Similarity=0.168 Sum_probs=25.9
Q ss_pred cCCCCceEEEEecCc---hhhhHHHHHHHhC-----CCCccccccccCceeE
Q 011497 199 LWPNVRYIKCVTTGS---MSQYCSKIKYYAG-----EVPVLGGDYFASECYV 242 (484)
Q Consensus 199 lWP~L~~i~~~~~G~---~~~y~~~l~~~~g-----~v~~~~~~y~aSEg~~ 242 (484)
-.++|+.| ..|+ .....+++++.++ ++.++ .+||.||+.+
T Consensus 309 ~l~~lr~i---~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~ 356 (480)
T 3t5a_A 309 DLGNILTI---LSGSERVQAATIKRFADRFARFNLQERVIR-PSYWLAEATV 356 (480)
T ss_dssp CCTTCCEE---EECCTTCCHHHHHHHHHHSGGGTCCGGGEE-EEEEETTTTE
T ss_pred chhhhhee---eecCCcCCHHHHHHHHHHHhhcCCChhhcc-ccccccccce
Confidence 35777744 4444 2445566776664 35677 9999999754
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=67.97 E-value=13 Score=28.45 Aligned_cols=49 Identities=10% Similarity=0.073 Sum_probs=38.3
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
.+..|+.+++||.+|.++++...++++.+..+..+. +.-.||.+-+...
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~ 63 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVS 63 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 456699999999999998877678888888877654 3468998766653
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=64.31 E-value=15 Score=27.82 Aligned_cols=49 Identities=16% Similarity=0.075 Sum_probs=37.2
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
.+..|+.+++||.+|.++++...++++.+..+..+. +.-.||.+-+...
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~ 61 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQVA 61 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 456699999999999998876667777777776644 3468998776653
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=63.10 E-value=2.1 Score=42.36 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=15.1
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+.+|.+.+.
T Consensus 97 ~~TSGTT-G~PKgv~~t~~~~~ 117 (369)
T 3hgu_A 97 YESGGTT-GAPKYVVAYDAWIE 117 (369)
T ss_dssp EEECC----CCEEEEECHHHHH
T ss_pred EECCCCC-CCCCEEEECHHHHH
Confidence 4699999 99999999988653
No 45
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=60.01 E-value=2.8 Score=41.71 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.3
Q ss_pred cCCCCCCCCccccccCchHHH
Q 011497 3 SSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 3 ~TSGTT~g~~K~IP~t~~~l~ 23 (484)
.||||| |+||-+..|.+.+.
T Consensus 44 ~TSGTT-G~PKgV~~th~~l~ 63 (358)
T 4gs5_A 44 HTSGST-GMPKPITVTRAQLA 63 (358)
T ss_dssp EEECTT-SSEEEEEEEHHHHH
T ss_pred ECCccc-ccCcEEEEeHHHHH
Confidence 599999 99999999987653
No 46
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=58.67 E-value=29 Score=26.35 Aligned_cols=49 Identities=6% Similarity=0.037 Sum_probs=36.2
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
.+..|+.+++||.+|.++++...++++.+..+..+. +.-.||.+-+...
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkv~ 63 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVD-GAVAHFQVTMKVG 63 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 455699999999999998876667777777766643 3357888666553
No 47
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=56.56 E-value=15 Score=27.85 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=36.4
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
.+..|+.+++||.+|.++++...++++.+..+..+. +.-.||.+-+...
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkV~ 63 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGE-AGVKEYQVVLEVG 63 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 456699999999999998876667777777766643 3357888766653
No 48
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=56.02 E-value=16 Score=28.05 Aligned_cols=49 Identities=16% Similarity=0.110 Sum_probs=36.6
Q ss_pred eecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 338 EIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 338 Ekl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
.+..|+.+++||.+|.++++...++++.+..+..+. +.-.||.+-+...
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV~ 64 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKVG 64 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEE
Confidence 456699999999999998876667777777776643 3457898666653
No 49
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH motif, DNA stem loop, transposition; 1.90A {Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A 2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Probab=55.92 E-value=97 Score=26.74 Aligned_cols=103 Identities=11% Similarity=0.170 Sum_probs=58.6
Q ss_pred EEEeeeCCC--cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHH
Q 011497 326 VEFVMRAPK--SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRC 403 (484)
Q Consensus 326 i~F~gR~~~--i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~ 403 (484)
|.|+++... +.++ ..+.+.+.+.+++. + .++.+.+|++.+ -|.+++|++... . .-...+..+
T Consensus 25 iv~~~k~R~~vf~~~--~~~~l~~~l~~~~~---~-~~~~i~a~~vmp------DHVHlLv~~~p~---~-slS~~~~~l 88 (159)
T 2vjv_A 25 IVWCPKYRRKVLVGA--VEMRLKEIIQEVAK---E-LRVEIIEMQTDK------DHIHILADIDPS---F-GVMKFIKTA 88 (159)
T ss_dssp EEECBGGGCCCCSHH--HHHHHHHHHHHHHH---H-TTCEEEEEEEET------TEEEEEEECCTT---T-CHHHHHHHH
T ss_pred EEEeccCCccccCcc--HHHHHHHHHHHhhc---c-CCEEEEEEeecC------CcEEEEEecCCC---c-chhHHHhhc
Confidence 344444333 4443 35678888888887 6 789999998764 488899987532 0 111222222
Q ss_pred HHHHHHHhChhHHHhhhc-CCC--CCcEEEEeCCChHHHHHHHH
Q 011497 404 CSSLEDAFGSIYKVQRDR-GEI--SPLSVSIVKPGTFDRLLQVA 444 (484)
Q Consensus 404 ~~~ld~~Ln~~Y~~~R~~-g~l--~p~~v~~v~~gtf~~~~~~~ 444 (484)
...--..+|..|...|.. +.+ ..--+..|...++....++.
T Consensus 89 K~~sSr~i~~~~~~~~~~~~~lWq~~Y~~~tv~~~~~~~i~~YI 132 (159)
T 2vjv_A 89 KGRSSRILRQEFNHLKTKLPTLWTNSCFISTVGGAPLNVVKQYI 132 (159)
T ss_dssp HHHHHHHHHHHCHHHHHSCSCSBCSCEEEEEECSSCHHHHHHHH
T ss_pred cccccHHHHHHchhhhhcCccceeCCEEeEEeCCccHHHHHHHH
Confidence 222222234444433222 434 44557777766788888874
No 50
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=49.57 E-value=6.6 Score=40.00 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=12.3
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 189 ~~TSGTT-G~PKgV~~th~~l~ 209 (480)
T 3t5a_A 189 QYTSGST-RTPAGVVMSHQNVR 209 (480)
T ss_dssp ECC-------CCCEEEEHHHHH
T ss_pred EecCCCC-CCCcEEEEeHHHHH
Confidence 4699999 99999999988653
No 51
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=47.49 E-value=7.8 Score=40.16 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=18.4
Q ss_pred ccCCCCCCCCccccccCchHHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALSK 24 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~~ 24 (484)
..||||| |+||-+..|.+.+..
T Consensus 161 ~~TSGTT-G~PKgV~~sh~~l~~ 182 (505)
T 3nyq_A 161 VYTSGTT-GPPKGAVIPRRALAT 182 (505)
T ss_dssp EEECCSS-SSCEEEEEEHHHHHH
T ss_pred EeCCCCc-CCCCeEEEeHHHHHH
Confidence 4699999 999999999886543
No 52
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=46.16 E-value=8.6 Score=40.26 Aligned_cols=21 Identities=24% Similarity=0.172 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 186 ~~TSGTT-G~PKgV~~sh~~l~ 206 (549)
T 3g7s_A 186 PYTGGTT-GMPKGVMLTHFNLA 206 (549)
T ss_dssp CEECCCC-C-CEEEEEEHHHHH
T ss_pred EECCCcc-CCCceEEEcHHHHH
Confidence 4699999 99999999988654
No 53
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=43.88 E-value=9.2 Score=39.56 Aligned_cols=21 Identities=24% Similarity=0.350 Sum_probs=17.7
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 149 ~~TSGTT-G~PKgV~~sh~~l~ 169 (511)
T 3e7w_A 149 IYTSGST-GNPKGVQISAANLQ 169 (511)
T ss_dssp EEECCTT-SSCEEEEEEHHHHH
T ss_pred EECCCCC-CCCCEEEEcHHHHH
Confidence 3699999 99999999987653
No 54
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=43.60 E-value=9.2 Score=40.08 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 198 ~~TSGTT-G~PKgv~~sh~~~ 217 (548)
T 2d1s_A 198 MNSSGST-GLPKGVQLTHENI 217 (548)
T ss_dssp ECCSSCS-SSCCCEEEEHHHH
T ss_pred EeCCCCC-CCCCEEEecHHHH
Confidence 4699999 9999999998764
No 55
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=43.26 E-value=9.3 Score=39.89 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 182 ~~TSGTT-G~PKgV~~sh~~~ 201 (576)
T 3gqw_A 182 QYTSGST-RFPRGVIITHREV 201 (576)
T ss_dssp ECTTSCS-SSCCCEEEEHHHH
T ss_pred EeCCCCC-CCCceEEeeHHHH
Confidence 4699999 9999999998765
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=42.59 E-value=8.9 Score=39.60 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=15.2
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 159 ~~TSGTT-G~PKgV~~sh~~~~ 179 (504)
T 1t5h_X 159 FYTSGTT-GLPKAAIIPQRAAE 179 (504)
T ss_dssp EECCC----CCCEEEEEGGGHH
T ss_pred EeCCCCC-CCCCEEEecHHHHH
Confidence 4699999 99999999998654
No 57
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=41.63 E-value=9.3 Score=39.66 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=15.0
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+.+|.+.+.
T Consensus 176 ~~TSGTT-G~PKgV~~sh~~l~ 196 (517)
T 3r44_A 176 MYTSGTT-GHPKGVVHTHESVH 196 (517)
T ss_dssp EEECC----CCEEEEEEHHHHH
T ss_pred EECCccc-ccCceeeeeHHHHH
Confidence 4699999 99999999988653
No 58
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=41.52 E-value=8.2 Score=39.90 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=13.8
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 150 ~~TSGTT-G~PKgv~~th~~l~ 170 (512)
T 3fce_A 150 IYTSGST-GNPKGVQITYNCLV 170 (512)
T ss_dssp EEECC-----CEEEEEEHHHHH
T ss_pred EECCCCC-CCCceEEEehHHHH
Confidence 4699999 99999999987653
No 59
>2fyx_A Transposase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Deinococcus radiodurans} SCOP: d.58.57.1 PDB: 2xqc_A 2xm3_A 2xma_A 2xo6_A
Probab=41.11 E-value=1.6e+02 Score=24.72 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=31.5
Q ss_pred cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeec
Q 011497 335 SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIRE 388 (484)
Q Consensus 335 i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~ 388 (484)
+.++ ..+.+.+++.+++. + .++.+.+|++.+ -|..++|++..
T Consensus 38 f~~~--~~~~l~~~l~~~~~---~-~~~~i~a~~vmp------DHvHlLv~~~p 79 (143)
T 2fyx_A 38 LVDE--VADGLKDILRDIAT---Q-NGLELVALEVMP------DYVHLLLGATP 79 (143)
T ss_dssp CCHH--HHHHHHHHHHHHHH---H-TTCEEEEEEECS------SEEEEEEEECT
T ss_pred cChH--HHHHHHHHHHHHHh---h-cCeEEEEEEecC------CeEEEEEecCC
Confidence 4444 46678888888887 6 789999998664 48889998753
No 60
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=40.35 E-value=8.1 Score=39.89 Aligned_cols=21 Identities=10% Similarity=0.121 Sum_probs=16.0
Q ss_pred ccCCCCCCCCccccccCchHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALS 23 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~ 23 (484)
..||||| |+||-+..|.+.+.
T Consensus 166 ~~TSGTT-G~PKgV~~sh~~l~ 186 (509)
T 3ivr_A 166 IHTAAVG-GRPRGALISQGNLL 186 (509)
T ss_dssp EEEEC---CCEEEEEEEHHHHH
T ss_pred EeCCCCC-CCCcEEEEehHHHH
Confidence 3699999 99999999988653
No 61
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=39.96 E-value=11 Score=39.51 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=15.7
Q ss_pred ccCCCCCCCCccccccCchHHHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSALSK 24 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l~~ 24 (484)
..||||| |+||-+..|.+.+..
T Consensus 181 ~~TSGTT-G~PKgV~~th~~l~~ 202 (562)
T 3ite_A 181 LYTSGST-GTPKGVRVSRHNLSS 202 (562)
T ss_dssp EEECC----CCEEEEEEHHHHHH
T ss_pred EECCCCC-CCCcEEEECchhHHH
Confidence 4699999 999999999886644
No 62
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=38.75 E-value=9.8 Score=39.67 Aligned_cols=20 Identities=35% Similarity=0.253 Sum_probs=17.4
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 184 ~~TSGTT-G~PKgv~~th~~l 203 (536)
T 3ni2_A 184 PYSSGTT-GLPKGVMLTHKGL 203 (536)
T ss_dssp CEECTTS-SSCEEEEEEHHHH
T ss_pred EcCCCcc-ccchHHHhhHHHH
Confidence 4699999 9999999998764
No 63
>2f5g_A Transposase, putative; dimer, stem-loop binding, gene regulation; 1.70A {Sulfolobus solfataricus} SCOP: d.58.57.1 PDB: 2f4f_A 2ec2_A
Probab=38.58 E-value=1.6e+02 Score=24.09 Aligned_cols=106 Identities=8% Similarity=0.087 Sum_probs=55.2
Q ss_pred EEEeeeCCC-cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccccCCCHHHHHHHH
Q 011497 326 VEFVMRAPK-SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCC 404 (484)
Q Consensus 326 i~F~gR~~~-i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~ 404 (484)
|.|++.... +..+. ..+.+.+++.+++. + .++.+.+|++.+ -|.+++|++... . .-...+..+.
T Consensus 17 i~~~~~~R~~v~~~~-~~~~l~~~l~~~~~---~-~~~~i~a~~imp------dHvHllv~~~~~---~-~ls~~~~~lK 81 (133)
T 2f5g_A 17 FVWIPKHRRNTLVNE-IAEYTKEVLKSIAE---E-LGCEIIALEVMP------DHIHLFVNCPPR---Y-APSYLANYFK 81 (133)
T ss_dssp EEECBSSCTTCSCHH-HHHHHHHHHHHHHH---H-HTCEEEEEEEET------TEEEEEEECCTT---S-CHHHHHHHHH
T ss_pred EEEecCcchhhhchh-HHHHHHHHHHHHHH---h-CCeEEeeeeecC------CcEEEEEEecCC---c-cHHHHHHHHh
Confidence 344444333 33333 35567788888877 5 689999998764 488999987532 0 0112222222
Q ss_pred HHHHHHhChhHHHhhhcCCC--CCcEEEEeCCChHHHHHHHHHHc
Q 011497 405 SSLEDAFGSIYKVQRDRGEI--SPLSVSIVKPGTFDRLLQVAIEK 447 (484)
Q Consensus 405 ~~ld~~Ln~~Y~~~R~~g~l--~p~~v~~v~~gtf~~~~~~~~~~ 447 (484)
..--..+|..|...+ .+.+ ..--...|...+++...++...+
T Consensus 82 ~~ss~~i~~~~~~~~-~~~lWq~~y~~~~i~~~~~~~i~~YI~~n 125 (133)
T 2f5g_A 82 GKSARLILKKFPQLN-KGKLWTRSYFVATAGNVSSEVIKKYIEEQ 125 (133)
T ss_dssp HHHHHHHHHHCGGGC-SSCSBCSCEEEEEEBCCCHHHHHHHHHHH
T ss_pred hHhHHHHHHhchhhc-CCCEEEcCeeeEeecCCCHHHHHHHHHhC
Confidence 222222233222211 2334 33456667655677666654433
No 64
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=35.74 E-value=8.8 Score=40.11 Aligned_cols=20 Identities=35% Similarity=0.404 Sum_probs=17.0
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 182 ~~TSGTT-G~PKgV~~sh~~l 201 (541)
T 1v25_A 182 AYTTGTT-GLPKGVVYSHRAL 201 (541)
T ss_dssp EEECSSS-SSCEEEEEEHHHH
T ss_pred EECCCCC-CCCcEeeeehHHH
Confidence 3599999 9999999988754
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=35.54 E-value=13 Score=39.14 Aligned_cols=20 Identities=30% Similarity=0.343 Sum_probs=16.9
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 220 ~~TSGTT-G~PKgV~~th~~l 239 (570)
T 4gr5_A 220 MFTSGST-GRPKGVMSPHRAL 239 (570)
T ss_dssp ECCSSCC-SSCCCEEEEHHHH
T ss_pred EECCcCC-CCCeEEEEecHHH
Confidence 4699999 9999999887754
No 66
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=35.49 E-value=11 Score=39.48 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=12.3
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 196 ~~TSGTT-G~PKgV~~th~~~ 215 (550)
T 3rix_A 196 MNSSGST-GLPKGVALPHRTA 215 (550)
T ss_dssp EEC------CCCEEEEEHHHH
T ss_pred EECCCcc-cCcchhhhhHHHH
Confidence 4699999 9999999998754
No 67
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=35.46 E-value=8.4 Score=40.02 Aligned_cols=20 Identities=40% Similarity=0.345 Sum_probs=12.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 189 ~~TSGTT-G~PKgv~~sh~~l 208 (529)
T 2v7b_A 189 LYSSGST-GKPKGTVHTHANL 208 (529)
T ss_dssp EEC------CCCEEEEEHHHH
T ss_pred EECCCCC-CCCceEEEEhhHH
Confidence 3699999 9999999988753
No 68
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=34.19 E-value=12 Score=39.48 Aligned_cols=20 Identities=25% Similarity=0.265 Sum_probs=12.7
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|.+.+
T Consensus 188 ~~TSGTT-G~PKgV~~th~~l 207 (563)
T 1amu_A 188 IYTSGTT-GNPKGTMLEHKGI 207 (563)
T ss_dssp EEEC------CEEEEEESHHH
T ss_pred EECCCCC-CCCcEEEEehHHH
Confidence 4699999 9999999998865
No 69
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=33.39 E-value=13 Score=39.36 Aligned_cols=20 Identities=30% Similarity=0.230 Sum_probs=16.6
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 231 ~~TSGTT-G~PKgV~~~~~~~ 250 (580)
T 3etc_A 231 YFSSGTA-GFPKMVEHDNTYP 250 (580)
T ss_dssp EEECCSS-SSCEEEEEETTHH
T ss_pred EEeCCCC-CCccEEEeccHHH
Confidence 3599999 9999999887743
No 70
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=32.02 E-value=13 Score=39.90 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.1
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+.+|.+.+
T Consensus 170 iyTSGST-G~PKgV~~th~~l 189 (620)
T 4dg8_A 170 NFSSGTT-GRPKAIACTHAGI 189 (620)
T ss_dssp EEEBSSS-SSCEEEEEEHHHH
T ss_pred EECCCcc-ccCeEEEEchHHH
Confidence 3699999 9999999998754
No 71
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=31.73 E-value=12 Score=39.35 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=16.4
Q ss_pred ccCCCCCCCCccccccCchH
Q 011497 2 LSSSGTSSMKPKLIPYFDSA 21 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~ 21 (484)
..||||| |+||-+..|.+.
T Consensus 212 ~~TSGTT-G~PKgV~~sh~~ 230 (570)
T 3c5e_A 212 YFTSGTS-GLPKMAEHSYSS 230 (570)
T ss_dssp EECCCSS-SSCCEEEEEHHH
T ss_pred EECCCCC-CCCCEEEechHH
Confidence 3699999 999999998873
No 72
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=28.95 E-value=15 Score=39.61 Aligned_cols=20 Identities=25% Similarity=0.291 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 268 lyTSGTT-G~PKgV~~sh~~~ 287 (663)
T 1ry2_A 268 LYTSGST-GAPKGVQHSTAGY 287 (663)
T ss_dssp EEECCSS-SSCEEEEECSHHH
T ss_pred EeccCCC-CCCceEEEchhHH
Confidence 3699999 9999999998754
No 73
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=28.54 E-value=2.1e+02 Score=23.47 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCCCC-CCChHHHHHHHHHHhC-CCCHHHHHHHHHHhcCCCc
Q 011497 140 ESKWEQLCDDLENGYPCL-DITEVAMRDSVIEVLG-GPQPDLSKRIRSICGESNW 192 (484)
Q Consensus 140 e~~w~el~~dI~~Gt~~~-~i~~~~iR~~l~~~lg-~p~p~rA~~L~~~~~~~~~ 192 (484)
++.=.+++..+.+..-.. .++..+|+..+.++.. .|+|+-.+++++.+...||
T Consensus 46 ddev~~Va~~L~~~~~~~~pi~~~dI~~~It~vT~~~P~~eDi~RV~arLaa~GW 100 (107)
T 3ol3_A 46 EDEVVRAAQAILRSTDGQSPVTDDDIRNAVHQIIEKEPTAEEINQVAARLASVGW 100 (107)
T ss_dssp HHHHHHHHHHHHHHCCSSSCBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHhcCCcCHHHHHHHHHHHHhcCC
Confidence 555667777776654433 4888899999999887 4899988888888877665
No 74
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=28.34 E-value=14 Score=39.69 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.2
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+..|...+
T Consensus 262 lyTSGTT-G~PKgV~~sh~~~ 281 (652)
T 1pg4_A 262 LYTSGST-GKPKGVLHTTGGY 281 (652)
T ss_dssp EEECCSS-SSCEEEEEESHHH
T ss_pred EeccCCC-CCCceEEECchHH
Confidence 4699999 9999999998754
No 75
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=26.94 E-value=24 Score=39.78 Aligned_cols=20 Identities=35% Similarity=0.253 Sum_probs=17.5
Q ss_pred ccCCCCCCCCccccccCchHH
Q 011497 2 LSSSGTSSMKPKLIPYFDSAL 22 (484)
Q Consensus 2 ~~TSGTT~g~~K~IP~t~~~l 22 (484)
..||||| |+||-+.+|.+.+
T Consensus 231 ~~TSGTT-G~PKgV~~sh~~l 250 (979)
T 3tsy_A 231 PYSSGTT-GLPKGVMLTHKGL 250 (979)
T ss_dssp CBCCCSS-SSCCBEEEEHHHH
T ss_pred EeCCCCC-CCCeEEEechHHH
Confidence 4699999 9999999998765
No 76
>2m0n_A Putative uncharacterized protein; tuberculosis, structural genomics, seattle structural genomi for infectious disease, ssgcid; NMR {Mycobacterium abscessus}
Probab=26.55 E-value=1.6e+02 Score=24.39 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHhcCCC----CCCChHHHHHHHHHHhC-CCCHHHHHHHHHHhcCCCc
Q 011497 140 ESKWEQLCDDLENGYPC----LDITEVAMRDSVIEVLG-GPQPDLSKRIRSICGESNW 192 (484)
Q Consensus 140 e~~w~el~~dI~~Gt~~----~~i~~~~iR~~l~~~lg-~p~p~rA~~L~~~~~~~~~ 192 (484)
++.=.+++..+.+..-. ..++..+|+..+.++.. -|+|+-.+++++.+...||
T Consensus 43 deEV~~Va~~L~~~~~~~~~~~~i~~~dI~v~It~VT~e~P~peDI~RV~arLaA~GW 100 (112)
T 2m0n_A 43 EEQVQEVVAKLTDPESSAQIDGVVSKDEIEKFIADVTKDEPTAQDISRVASRLAAGGW 100 (112)
T ss_dssp HHHHHHHHHHHTCTTTHHHHTSCCCTTHHHHHHHHTTTCCCCHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHhccCcccCCCCCCHHHHHHHHHHHhccCcCHHHHHHHHHHHHhcCC
Confidence 55667778877665442 34788899999999886 4899988888887776565
No 77
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=22.57 E-value=2.7e+02 Score=27.14 Aligned_cols=63 Identities=10% Similarity=0.041 Sum_probs=40.3
Q ss_pred eCCCcEEEEeeeCCC------------cceee-cCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEe
Q 011497 320 YNSSPQVEFVMRAPK------------SSFEI-ISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI 386 (484)
Q Consensus 320 ~~~~P~i~F~gR~~~------------i~gEk-l~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~ 386 (484)
.++.-||-.++|... +..-+ -.+-.+.+++..+.. .|+.|...-..+-. ..++.|.+|||+
T Consensus 178 ~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~-----~gINLtkIESRP~~-~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 178 PDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFAS-----RGVNLSRIESRPTG-QYLGHYFFSIDA 251 (313)
T ss_dssp TTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHT-----TTCCEEEEEEEECS-SSTTSEEEEEEE
T ss_pred CcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHH-----CCccEEEEEEeecC-CCCccEEEEEEE
Confidence 345667777777541 11121 235667788887755 67777666666533 347899999999
Q ss_pred ec
Q 011497 387 RE 388 (484)
Q Consensus 387 ~~ 388 (484)
.+
T Consensus 252 eg 253 (313)
T 3mwb_A 252 DG 253 (313)
T ss_dssp ES
T ss_pred eC
Confidence 75
No 78
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=20.36 E-value=3.7e+02 Score=25.46 Aligned_cols=61 Identities=8% Similarity=0.053 Sum_probs=39.8
Q ss_pred CCCcEEEEeeeC-----CC---ccee---ecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEee
Q 011497 321 NSSPQVEFVMRA-----PK---SSFE---IISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIR 387 (484)
Q Consensus 321 ~~~P~i~F~gR~-----~~---i~gE---kl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~ 387 (484)
++.-||-.++|. +. +..- +-.+-.+.+++..+.. .|+.|...-..+.. +.++.|.+|||+.
T Consensus 168 ~N~TRF~vl~~~~~~~~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~-----~gINLtkIESRP~~-~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 168 HNVTRFLVIKNQQQFDQNATSLMFLITPMHDKPGLLASVLNTFAL-----FNINLSWIESRPLK-TQLGMYRFFVQAD 239 (267)
T ss_dssp CCEEEEEEEESCCCCCSSCSEEEEEEEESSCCTTHHHHHHHHHHT-----TTCCEEEEEEEECS-SSTTCEEEEEEES
T ss_pred CCceEEEEEecCCCCCCCeEEEEEEcCCCCCCcChHHHHHHHHHH-----cCCCeeEEEEeecC-CCCccEEEEEEEe
Confidence 455577777663 22 2223 3346678888887755 68777776666543 3478999999997
No 79
>1vfg_A A-adding enzyme, poly A polymerase; transferase, RNA, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: APC; 2.80A {Aquifex aeolicus} SCOP: a.173.1.1 d.218.1.4
Probab=20.32 E-value=1.7e+02 Score=29.24 Aligned_cols=69 Identities=7% Similarity=-0.022 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHH----hcCCCCCCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccC
Q 011497 129 AIGLIGAFSFFESKW----EQLCDDLE----NGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLW 200 (484)
Q Consensus 129 ~~~l~~~~~~le~~w----~el~~dI~----~Gt~~~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lW 200 (484)
|.-+++++++..+.- ++..+.|+ .+.+.. +..+.++..+.+.|..|+|..+=++...+ |++..++
T Consensus 150 PlRiLRa~Rfaa~~gf~i~~~T~~~i~~~~~~~~l~~-~s~eRi~~El~kiL~~~~~~~~l~~l~~~------glL~~~l 222 (390)
T 1vfg_A 150 PVRILRALRFAGRLNFKLSRSTEKLLKQAVNLGLLKE-APRGRLINEIKLALREDRFLEILELYRKY------RVLEEII 222 (390)
T ss_dssp TTHHHHHHHHHHHHTCEECHHHHHHHHHHHHTTGGGT-SCHHHHHHHHHHHHHCSSHHHHHHHHHHT------TCHHHHS
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhhhhc-cCHHHHHHHHHHHHcCCCHHHHHHHHHHc------CCHHHHh
Confidence 566777777766541 23333333 233443 78889999999999888887765555454 3788999
Q ss_pred CCCc
Q 011497 201 PNVR 204 (484)
Q Consensus 201 P~L~ 204 (484)
|.+.
T Consensus 223 Pe~~ 226 (390)
T 1vfg_A 223 EGFQ 226 (390)
T ss_dssp TTCC
T ss_pred Hhhh
Confidence 9986
Done!