BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011499
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B
Length = 853
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 104/223 (46%), Positives = 137/223 (61%), Gaps = 8/223 (3%)
Query: 165 VKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFA-CGPVHFQCNSWVQS 223
+ A+ Y A+F DS+FG PGA + N Q EF+L+++ +E G +HF CNSWV +
Sbjct: 88 IGAKEEAYDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYN 147
Query: 224 TKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLG 283
+K + RIFFAN YLPSETPA L RE+ELK++RG G G RK DRIYDYDVYNDLG
Sbjct: 148 SKHYKTDRIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLG 207
Query: 284 NPDRGSEFVRPSLGGEQRPYPRRCRTGRLPTDTDLLAESRIEKPLP-IYVPRDEQFEESK 342
+PD+G ++ RP LGG PYPRR RTGR T D EKP +Y+PRDE F K
Sbjct: 208 DPDKGEKYARPVLGGSALPYPRRGRTGRGKTRKD----PNSEKPGDFVYLPRDEAFGHLK 263
Query: 343 QDAFSAGRLKGALHNLIPLLKASISAR--NHDFSGFSDIDSLY 383
F A +K +++P+L + + DF F+++ LY
Sbjct: 264 SSDFLAYGIKSVAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLY 306
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 197 bits (502), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 151/269 (56%), Gaps = 8/269 (2%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVD 179
D LT +GR+V L+L+ T+ D KG + + + A + + F D
Sbjct: 47 LDTLTAFLGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
Query: 180 SNFGTPGAITVANKHQKEFFLETITIEGFA-CGPVHFQCNSWVQSTKDHPGKRIFFANQP 238
G PGA + N Q EFFL ++T+E G +HF CNSW+ + K RIFFANQ
Sbjct: 107 DGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQT 166
Query: 239 YLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGG 298
YLPSETPA L RE+EL ++RG G G RK +RIYDYDVYNDLG+PD+G RP LGG
Sbjct: 167 YLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
Query: 299 EQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHN 357
PYPRR RTGR PT D +ESR +Y+PRDE F K F LK N
Sbjct: 227 NDTFPYPRRGRTGRKPTRKDPNSESRSND---VYLPRDEAFGHLKSSDFLTYGLKSVSQN 283
Query: 358 LIPLLKAS--ISARNHDFSGFSDIDSLYS 384
++PLL+++ ++ +F F ++ LYS
Sbjct: 284 VLPLLQSAFDLNFTPREFDSFDEVHGLYS 312
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 197 bits (501), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/269 (42%), Positives = 151/269 (56%), Gaps = 8/269 (2%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVD 179
D LT +GR+V L+L+ T+ D KG + + + A + + F D
Sbjct: 47 LDTLTAFLGRSVSLQLISATKADANGKGKLGKATFLEGIITSLPTLGAGQSAFKINFEWD 106
Query: 180 SNFGTPGAITVANKHQKEFFLETITIEGFA-CGPVHFQCNSWVQSTKDHPGKRIFFANQP 238
G PGA + N Q EFFL ++T+E G +HF CNSW+ + K RIFFANQ
Sbjct: 107 DGSGIPGAFYIKNFMQTEFFLVSLTLEDIPNHGSIHFVCNSWIYNAKLFKSDRIFFANQT 166
Query: 239 YLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGG 298
YLPSETPA L RE+EL ++RG G G RK +RIYDYDVYNDLG+PD+G RP LGG
Sbjct: 167 YLPSETPAPLVKYREEELHNLRGDGTGERKEWERIYDYDVYNDLGDPDKGENHARPVLGG 226
Query: 299 EQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHN 357
PYPRR RTGR PT D +ESR +Y+PRDE F K F LK N
Sbjct: 227 NDTFPYPRRGRTGRKPTRKDPNSESRSND---VYLPRDEAFGHLKSSDFLTYGLKSVSQN 283
Query: 358 LIPLLKAS--ISARNHDFSGFSDIDSLYS 384
++PLL+++ ++ +F F ++ LYS
Sbjct: 284 VLPLLQSAFDLNFTPREFDSFDEVHGLYS 312
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant
Length = 839
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
pdb|1F8N|A Chain A, Lipoxygenase-1 (Soybean) At 100k, New Refinement
pdb|1YGE|A Chain A, Lipoxygenase-1 (Soybean) At 100k
pdb|2SBL|A Chain A, The Three-Dimensional Structure Of An Arachidonic Acid 15-
Lipoxygenase
Length = 839
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant
Length = 839
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant
Length = 839
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant
Length = 839
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant
Length = 839
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant
Length = 839
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 163/295 (55%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L + RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant
Length = 839
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant
Length = 839
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement
Length = 839
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant
Length = 839
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant
Length = 839
Score = 186 bits (472), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/295 (40%), Positives = 162/295 (54%), Gaps = 15/295 (5%)
Query: 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREA 154
K K VL + ++ + + V+ +A +GR+V L+L+ T+ D KG K ++
Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAVDNLNAF---LGRSVSLQLISATKADAHGKG-KVGKDT 62
Query: 155 VLKDWSKK-SNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GP 212
L+ + + A + F D + G PGA + N Q EFFL+++T+E + G
Sbjct: 63 FLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQGT 122
Query: 213 VHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDR 272
+ F CNSWV +TK + RIFFAN Y+PSETPA L RE+ELK +RG G G RK DR
Sbjct: 123 IRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVEYREEELKSLRGNGTGERKEYDR 182
Query: 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQR-PYPRRCRTGRLPTDTDLLAESRIEKPLPIY 331
IYDYDVYNDLGNPD+ + RP LGG PYPRR RTGR PT TD E + E Y
Sbjct: 183 IYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEV---FY 239
Query: 332 VPRDEQFEESK-QDAFSAGRLKGALHNLIPLLKASISARNH--DFSGFSDIDSLY 383
VPRDE K +DA G K + P +++ ++ +F F D+ LY
Sbjct: 240 VPRDENLGHLKSKDALEIGT-KSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLY 293
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D
pdb|2IUK|B Chain B, Crystal Structure Of Soybean Lipoxygenase-D
Length = 864
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 113/270 (41%), Positives = 147/270 (54%), Gaps = 14/270 (5%)
Query: 121 FDALTEKIGRNVVLELV-GTEVDPRTKGPKKSREAVL-KDWSKKSNVKAERVHYTAEFLV 178
D T +GRN+ ++L+ T+ D G K +E L K + A + ++ F
Sbjct: 55 IDTATSFLGRNISMQLISATQTDGSGNG-KVGKEVYLEKHLPTLPTLGARQDAFSIFFEW 113
Query: 179 DSNFGTPGAITVANKHQKEFFLETITIEGFA-CGPVHFQCNSWVQSTKDHPGKRIFFANQ 237
D++FG PGA + N EFFL ++ +E G + F CNSWV + + + RIFF N
Sbjct: 114 DASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYKKNRIFFVND 173
Query: 238 PYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLG 297
YLPS TPA L R++E + +RG G G RK DRIYDYDVYNDLGNPD G RP LG
Sbjct: 174 TYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILG 231
Query: 298 G-EQRPYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALH 356
G PYP R RTGR T TD EKP +YVPRDE F K F +K H
Sbjct: 232 GCSIYPYPLRVRTGRERTRTD----PNSEKPGEVYVPRDENFGHLKSSDFLTYGIKSLSH 287
Query: 357 NLIPLLKASI---SARNHDFSGFSDIDSLY 383
++IPL K++I + +F F D+ SLY
Sbjct: 288 DVIPLFKSAIFQLRVTSSEFESFEDVRSLY 317
>pdb|3IVD|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVD|B Chain B, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Uridine
pdb|3IVE|A Chain A, Putative 5'-Nucleotidase (C4898) From Escherichia Coli In
Complex With Cytidine
Length = 509
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 56/160 (35%), Gaps = 14/160 (8%)
Query: 34 WQNKLLQQKQFLVPVQQRRVHSRKAGAAGVRRGINNPVAALSEDLVK-GAASSAVPGAAE 92
W N LLQ Q P+ Q + + + + + P + +D VK G A
Sbjct: 100 WDNTLLQLSQAKFPIVQGNIFYQNSS----KSFWDKPYTIIEKDGVKIGVIGLHGVFAFN 155
Query: 93 KPVKFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSR 152
V R + R IK L D L K+ V L G + G R
Sbjct: 156 DTVSAATRVGIEARDEIK-----WLQRYIDELKGKVDLTVALIHEGVPARQSSXGGTDVR 210
Query: 153 EAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVAN 192
A+ KD S VK + T ++ GTP I V N
Sbjct: 211 RALDKDIQTASQVKGLDILITGH----AHVGTPEPIKVGN 246
>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox)
pdb|2DYB|B Chain B, The Crystal Structure Of Human P40(Phox)
Length = 341
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 220 WVQSTKDHPGKRIFFANQPYLPSETPAGLRAL--REKELKDIRGTGKGVRKLS 270
WV +D RIFF PY + P LR L R +++K + G V +++
Sbjct: 124 WVLMDED---VRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMA 173
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Query: 112 DFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVH 171
DF+ L +LTE+ + E G + T KK EA + K N+ A R+H
Sbjct: 206 DFERILTEPHASLTEQYKALMATE--GVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLH 263
Query: 172 YTAEFLVD 179
E L+D
Sbjct: 264 TVMERLMD 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,467,764
Number of Sequences: 62578
Number of extensions: 504891
Number of successful extensions: 1133
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 33
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)