Query 011499
Match_columns 484
No_of_seqs 197 out of 368
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 02:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011499.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011499hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02264 lipoxygenase 100.0 1E-120 3E-125 997.8 31.6 414 1-432 1-418 (919)
2 PLN02305 lipoxygenase 100.0 7E-111 2E-115 920.9 32.0 336 96-433 81-417 (918)
3 PLN02337 lipoxygenase 100.0 1E-109 3E-114 911.6 31.0 334 98-432 20-361 (866)
4 PF00305 Lipoxygenase: Lipoxyg 100.0 3.3E-60 7.2E-65 516.5 7.1 182 245-432 1-183 (667)
5 cd01751 PLAT_LH2 PLAT/ LH2 dom 100.0 4.2E-44 9.2E-49 324.1 14.8 135 98-236 2-137 (137)
6 smart00308 LH2 Lipoxygenase ho 99.4 3.3E-12 7.2E-17 108.5 10.4 83 131-223 20-104 (105)
7 PF01477 PLAT: PLAT/LH2 domain 99.0 1.3E-09 2.8E-14 92.5 9.4 66 169-234 44-113 (113)
8 cd00113 PLAT PLAT (Polycystin- 98.9 2.3E-08 5E-13 86.3 11.1 64 171-234 49-116 (116)
9 cd02899 PLAT_SR Scavenger rece 98.3 4E-06 8.7E-11 74.2 8.6 79 130-223 19-98 (109)
10 cd01753 PLAT_LOX PLAT domain o 98.0 3E-05 6.4E-10 68.4 9.4 54 169-224 49-105 (113)
11 cd01756 PLAT_repeat PLAT/LH2 d 97.8 0.00017 3.7E-09 63.7 9.6 63 169-234 51-118 (120)
12 cd01752 PLAT_polycystin PLAT/L 97.7 0.00024 5.1E-09 62.9 10.0 55 172-226 51-109 (120)
13 cd01757 PLAT_RAB6IP1 PLAT/LH2 97.7 0.0002 4.3E-09 64.0 9.5 47 180-226 50-100 (114)
14 cd01754 PLAT_plant_stress PLAT 97.6 0.00028 6E-09 64.3 7.9 56 169-226 57-119 (129)
15 cd01755 PLAT_lipase PLAT/ LH2 55.2 68 0.0015 28.6 7.9 53 167-219 43-105 (120)
16 PF03802 CitX: Apo-citrate lya 45.0 13 0.00027 35.5 1.7 49 243-308 88-136 (170)
17 KOG2080 Uncharacterized conser 27.1 26 0.00055 41.5 0.7 50 174-224 1015-1068(1295)
18 TIGR03124 ctirate_citX holo-AC 27.1 30 0.00065 33.1 1.1 50 242-308 85-134 (165)
19 KOG4578 Uncharacterized conser 22.5 1.5E+02 0.0033 32.0 5.2 69 273-362 250-318 (421)
20 PF06232 ATS3: Embryo-specific 20.7 1.5E+02 0.0032 27.6 4.1 51 170-223 66-116 (125)
No 1
>PLN02264 lipoxygenase
Probab=100.00 E-value=1.2e-120 Score=997.81 Aligned_cols=414 Identities=70% Similarity=1.094 Sum_probs=375.2
Q ss_pred Cchhhhhccccccc-ccCCCcccccchhcccchhhccccccccccccccccccccccccccccccccccCCcccccccce
Q 011499 1 MALTREFMGAFSIF-ERSSSSSSSSKVLLNQSTFWQNKLLQQKQFLVPVQQRRVHSRKAGAAGVRRGINNPVAALSEDLV 79 (484)
Q Consensus 1 ma~~~~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (484)
||+++|||| ++++ ++++| .+++++++++...+++||+ .+|+. ..+-+|.++ ..+|++++++++
T Consensus 1 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~-------~~~~~~~~~~~~ 64 (919)
T PLN02264 1 MALAKEIMG-GRLIFERSSF-VSSSKHFRNSKRTQRTQFS-INPFR------QEQLRRVVK-------SGVVAAISEDLV 64 (919)
T ss_pred Cchhhhhhc-ceeeccCccc-ccchHHHhhcccchhceec-ccccc------HHHHHHHhc-------cCCeeeehHHHH
Confidence 999999999 6655 99999 9999999998889889994 57874 111122322 337899999988
Q ss_pred eeccccc---ccCCCCCcceEEEEEEEEEEecccccccccccchhhhhhhhcCCcEEEEEeeeecCCCCCCCcccccccc
Q 011499 80 KGAASSA---VPGAAEKPVKFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVL 156 (484)
Q Consensus 80 ~~~~~~~---~~~~~~~~~~~~vka~v~v~~~~~~~~~~~~~~~lD~~~dllGk~v~LqLVS~e~dp~tg~~k~s~~a~l 156 (484)
++...++ +..-.+|++.++|+|+|+|++++++++++..++++|+++|++|++|+|||||+++||+||+||+|++++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~D~~~~~~G~~v~lqLVSs~~~~~tg~~~~~~~a~l 144 (919)
T PLN02264 65 KTLRVSTVRKSEEEEEKAVKFKVRAVVTVRNKNKEDLKETLVKHLDAFTDKIGRNVVLELISTQVDPKTKEPKKSKAAVL 144 (919)
T ss_pred HhhccccccccccCcccceEEEEEEEEEEEeccccchhhcccchhhHHHHHhCCeEEEEEEeccccCCCCCccCCCcchh
Confidence 8765321 1122455677999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccceEEEEEEeccCCCCCceEEEEEecCCCcEEEeEEEEeecCCceEEEEeccceecCCCCCCceEEeeC
Q 011499 157 KDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHPGKRIFFAN 236 (484)
Q Consensus 157 ~~w~~~~~~~~~~~~y~v~F~v~~dfG~PGAi~V~N~h~~EffL~sItle~~p~g~i~FpCnSWV~~~~~~~~~RiFFsn 236 (484)
++|+++....+++.+|+++|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||+++|+.+||||+|
T Consensus 145 ~~~~~~~~~~~~~~~y~~~F~~~~~fG~pGAi~V~N~h~~EffL~~itle~~p~g~v~F~cnSWV~p~~~~~~~RiFF~N 224 (919)
T PLN02264 145 KDWSKKSNIKAERVHYTAEFTVDSAFGSPGAITVTNKHQKEFFLESITIEGFACGPVHFPCNSWVQSQKDHPGKRIFFTN 224 (919)
T ss_pred cccccCCCCCCCceEEEEEEEeccccCCcceEEEEeCCCceEEEEEEEeccCCCCcEEEecCCccccCcCCCCCceEecC
Confidence 99998755567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCCchhhHHHHHHHHHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCC
Q 011499 237 QPYLPSETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGEQRPYPRRCRTGRLPTDT 316 (484)
Q Consensus 237 kaYLPseTP~gL~~lReeEL~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs~~PYPRRcRTGRpptkt 316 (484)
|+|||+|||+||++|||+||++|||||+||||+|||||||||||||||||++++++||||||++||||||||||||||+|
T Consensus 225 k~YLP~~tP~~l~~~Re~eL~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~ 304 (919)
T PLN02264 225 QPYLPSETPAGLRALREKELRNLRGDGKGVRKLSDRIYDFDVYNDLGNPDKSRELARPTLGGKKIPYPRRCRTGRLPTDS 304 (919)
T ss_pred CCcCcccCCHHHHHHHHHHHHHhcCCCCCcCCcccchhhhhhhccCCCCCCCccccCcccCCCCCCCCCCCcCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccCCCCCcccCCCCCCChhhhhhhHhhHHHHHHHhhhhhHHHhhccCCCCCCCHHHHHHhhhcCCCCCcccccc
Q 011499 317 DLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHNLIPLLKASISARNHDFSGFSDIDSLYSEGLLLNLGLKDG 396 (484)
Q Consensus 317 DP~sEsR~~~~~~~YVPRDE~Fs~~K~~dF~~~~lks~~~~liP~l~~~~~~~~~~F~sF~DI~~LY~~Gi~l~~~~~~~ 396 (484)
||+||||.+++.++||||||+|+++|++||+++++||++|+++|+|+++++.+ +|+||+||++||++|++||....++
T Consensus 305 dp~~Esr~~~~~~iYvPrDE~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~--~F~~f~~i~~Ly~~g~~l~~~~~~~ 382 (919)
T PLN02264 305 DMMAESRVEKPLPMYVPRDEQFEESKQDTFAAGRLKAVLHNLIPSLKASILAE--DFANFGEIDSLYKEGLLLKLGFQDD 382 (919)
T ss_pred CCcccccccCCCceeCCCCCCcccchhhhHHHHHHHHHHHHhhhhhhhhcCCC--CCCCHHHHHHHHhcCCcCCcchhhh
Confidence 99999998766668999999999999999999999999999999999998855 9999999999999999999753344
Q ss_pred ccccCCchhhHhhhhccCCcccccCCCcccccCCcc
Q 011499 397 LLKKLPLPNVVSKIQESSQGLLKYNSPKILSSKYSV 432 (484)
Q Consensus 397 ~~~~~p~~~l~k~i~~~~e~~LKFp~P~vi~~Dk~a 432 (484)
.++++|++.++++|+++++.+||||+|+||++||+|
T Consensus 383 ~~~~~p~~~~~~~~~~~~~~~lkf~~P~vi~~d~~~ 418 (919)
T PLN02264 383 IFKKFPLPKVVTTLQESSEGLLKYDTPKILSKDKFA 418 (919)
T ss_pred HhhcCChHHHHHHhhhcccccccCCCCceeecChhh
Confidence 555689988999998889999999999999999987
No 2
>PLN02305 lipoxygenase
Probab=100.00 E-value=7.1e-111 Score=920.86 Aligned_cols=336 Identities=48% Similarity=0.854 Sum_probs=317.5
Q ss_pred eEEEEEEEEEEecccccccccccchhhhhhhhcCCcEEEEEeeeecCCCCCCCccccccccccccccccccccceEEEEE
Q 011499 96 KFKVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAE 175 (484)
Q Consensus 96 ~~~vka~v~v~~~~~~~~~~~~~~~lD~~~dllGk~v~LqLVS~e~dp~tg~~k~s~~a~l~~w~~~~~~~~~~~~y~v~ 175 (484)
..+|+|+|+||+++++++++..++++|+++|++|++|+|||||+++||+||+||++ +++|++|+++....+++.+|+++
T Consensus 81 ~~~i~~~v~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~-~~~l~~~~~~~~~~~~~~~~~~~ 159 (918)
T PLN02305 81 GIDVRAVITIRKKIKEKITEKFEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSV-ESSVRGWLPKPSNDPHIVEYAAD 159 (918)
T ss_pred CCeEEEEEEEEeecccchhhcccchhhHHHHhhCCeEEEEEEeccccCCCCCcccc-cchhhccccCCCCCCCceEEEEE
Confidence 36999999999999999999999999999999999999999999999999999988 99999999764432667799999
Q ss_pred EeccCCCCCceEEEEEecCCCcEEEeEEEEeecCCceEEEEeccceecCCCCCCceEEeeCcccCcCCCchhhHHHHHHH
Q 011499 176 FLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALREKE 255 (484)
Q Consensus 176 F~v~~dfG~PGAi~V~N~h~~EffL~sItle~~p~g~i~FpCnSWV~~~~~~~~~RiFFsnkaYLPseTP~gL~~lReeE 255 (484)
|+||++||+||||+|+|+|++||||++|+|+++|+|+|||+|||||||.++|+.+||||+||+|||+|||+||++|||+|
T Consensus 160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e 239 (918)
T PLN02305 160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED 239 (918)
T ss_pred EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCccccccCCCCCcccCCC
Q 011499 256 LKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGEQRPYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRD 335 (484)
Q Consensus 256 L~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs~~PYPRRcRTGRpptktDP~sEsR~~~~~~~YVPRD 335 (484)
|++|||||+||||+|||||||||||||||||++++++||||||++||||||||||||||+|||+||||.+++.++|||||
T Consensus 240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrD 319 (918)
T PLN02305 240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRD 319 (918)
T ss_pred HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876666899999
Q ss_pred CCCChhhhhhhHhhHHHHHHHhhhhhHHHhhccCCCCCCCHHHHHHhhhcCCCCCccccccccccCCch-hhHhhhhccC
Q 011499 336 EQFEESKQDAFSAGRLKGALHNLIPLLKASISARNHDFSGFSDIDSLYSEGLLLNLGLKDGLLKKLPLP-NVVSKIQESS 414 (484)
Q Consensus 336 E~Fs~~K~~dF~~~~lks~~~~liP~l~~~~~~~~~~F~sF~DI~~LY~~Gi~l~~~~~~~~~~~~p~~-~l~k~i~~~~ 414 (484)
|+|+|+|++||+++++||++|+++|+|+++++.++.+|+||+||++||++|++||.... ..++.+|++ .++++|.+++
T Consensus 320 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~-~~~~~~p~~~~~~~~i~~~~ 398 (918)
T PLN02305 320 ETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEP-KDIGLNPFLGNFMKQVLSVS 398 (918)
T ss_pred CCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhh-hhhhcCCchHHHHHHhhhcc
Confidence 99999999999999999999999999999999899999999999999999999997422 334448886 7889998889
Q ss_pred CcccccCCCcccccCCccc
Q 011499 415 QGLLKYNSPKILSSKYSVS 433 (484)
Q Consensus 415 e~~LKFp~P~vi~~Dk~a~ 433 (484)
|++||||+|+||++|++|=
T Consensus 399 ~~~lkf~~P~vi~~d~~~W 417 (918)
T PLN02305 399 ERLLKYDIPAVIKRDRFAW 417 (918)
T ss_pred cccccCCCcceeecccccc
Confidence 9999999999999999873
No 3
>PLN02337 lipoxygenase
Probab=100.00 E-value=1.5e-109 Score=911.55 Aligned_cols=334 Identities=40% Similarity=0.703 Sum_probs=312.6
Q ss_pred EEEEEEEEEecccccccccccchhhhhhhhcCCcEEEEEeeeecCC-CCC-CCccccccccccccccc-cccccceEEEE
Q 011499 98 KVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDP-RTK-GPKKSREAVLKDWSKKS-NVKAERVHYTA 174 (484)
Q Consensus 98 ~vka~v~v~~~~~~~~~~~~~~~lD~~~dllGk~v~LqLVS~e~dp-~tg-~~k~s~~a~l~~w~~~~-~~~~~~~~y~v 174 (484)
+|+|+|+|+++++++++++.++++|+++|++||+|+|||||+++|| +|| +||+|++++|++|+++. ...+++.+|++
T Consensus 20 ~~~~~v~l~~k~~ld~~~~~~~~lD~~~~l~G~~v~lqLvS~~~~~p~~g~~gk~~k~a~l~~w~~~~~~~~~~~~~y~~ 99 (866)
T PLN02337 20 KIKGTVVLMKKNVLDFNDFNASVLDRVHELLGKGVSLQLISSTVVDPENGLRGKLGKEAYLEKWITTITSLTAGESAFKV 99 (866)
T ss_pred eEEEEEEEEEecccchhhcccchhhhHHHhcCCeEEEEEEeccccccccCCccccCCccchhhhccCCCCCCCCceEEEE
Confidence 8999999999999999999999999999999999999999999887 787 88999999999999763 44677789999
Q ss_pred EEeccCCCCCceEEEEEecCCCcEEEeEEEEeecCC-ceEEEEeccceecCCCCCCceEEeeCcccCcCCCchhhHHHHH
Q 011499 175 EFLVDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFFANQPYLPSETPAGLRALRE 253 (484)
Q Consensus 175 ~F~v~~dfG~PGAi~V~N~h~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~~~~~RiFFsnkaYLPseTP~gL~~lRe 253 (484)
+|+||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||.++|+.+||||+||+|||+|||+||++|||
T Consensus 100 ~F~~~~~fG~pGAi~V~N~h~~EffL~sitle~~p~~g~v~f~cnSWV~~~~~~~~~RiFF~nk~ylp~~tP~~l~~~R~ 179 (866)
T PLN02337 100 TFDWDEKIGVPGAFIIKNNHHSEFYLKTVTLEDVPGHGRVHFVCNSWIYPAKRYRYDRVFFSNKTYLPSQTPAPLRPYRE 179 (866)
T ss_pred EEEecccCCCcceEEEEecCCceEEEEEEEEecCCCCCcEEEecCCccccCCCCCCCceEecCCCcCcccccHHHHHHHH
Confidence 999999999999999999999999999999999997 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCC-CCCCCCccCCCCCCCCCCCccccccCC-CCCcc
Q 011499 254 KELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGE-QRPYPRRCRTGRLPTDTDLLAESRIEK-PLPIY 331 (484)
Q Consensus 254 eEL~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs-~~PYPRRcRTGRpptktDP~sEsR~~~-~~~~Y 331 (484)
+||++|||||+||||+|||||||||||||||||++++++||||||+ +||||||||||||||+|||+||||.+. +.++|
T Consensus 180 ~eL~~lrG~g~gerk~~dRiYdyd~YnDlg~pd~~~~~~RpvLGg~~~~pyPRR~rTgr~~t~~dp~~esr~~~~~~~~y 259 (866)
T PLN02337 180 EELVNLRGDGKGELKEWDRVYDYDYYNDLGDPDKGNPYARPVLGGSQEYPYPRRGRTGRKPTKTDPNSESRLPLLSLNIY 259 (866)
T ss_pred HHHHHhcCCCCCCCCcccchhhhhhhccCCCCCCCccccCccCCCCCCCCCCCcccCCCCCCCCCCccccccccCCCCcc
Confidence 9999999999999999999999999999999999999999999999 799999999999999999999999765 34589
Q ss_pred cCCCCCCChhhhhhhHhhHHHHHHHhhhhhHHHhhccCCCCCCCHHHHHHhhhcCCCCCcc-ccccccccCCchhhHhhh
Q 011499 332 VPRDEQFEESKQDAFSAGRLKGALHNLIPLLKASISARNHDFSGFSDIDSLYSEGLLLNLG-LKDGLLKKLPLPNVVSKI 410 (484)
Q Consensus 332 VPRDE~Fs~~K~~dF~~~~lks~~~~liP~l~~~~~~~~~~F~sF~DI~~LY~~Gi~l~~~-~~~~~~~~~p~~~l~k~i 410 (484)
|||||+|+++|++||+++++||++|+++|+|+++++.+..+|+||+||++||++|++||.. ..+.+.+.+|++ ++++|
T Consensus 260 vPrDE~f~~~k~~~f~~~~l~~~~~~~~p~~~~~~~~~~~~f~~f~~i~~ly~~g~~lp~~~~~~~~~~~~p~~-~~~~~ 338 (866)
T PLN02337 260 VPRDERFGHLKMSDFLAYALKAIAQVLVPELEALFDKTPNEFDSFEDVLKLYEGGIKLPNGPLLEELRKNIPLE-MLKEL 338 (866)
T ss_pred cCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhhcCCCCCCchHHHHhhhcChHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999963 223455567875 45555
Q ss_pred -hccCCcccccCCCcccccCCcc
Q 011499 411 -QESSQGLLKYNSPKILSSKYSV 432 (484)
Q Consensus 411 -~~~~e~~LKFp~P~vi~~Dk~a 432 (484)
.++++.+||||+|+||++|+++
T Consensus 339 ~~~~~~~~l~fp~P~vi~~d~~~ 361 (866)
T PLN02337 339 LRTDGEYLLKFPMPQVIKEDKSA 361 (866)
T ss_pred HhhcccccccCCCCceeeccccc
Confidence 7788999999999999999985
No 4
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents the C-terminal region of these proteins.; GO: 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 2P0M_A 3RDE_B 2IUJ_A 1RRL_B 1JNQ_A ....
Probab=100.00 E-value=3.3e-60 Score=516.49 Aligned_cols=182 Identities=52% Similarity=0.886 Sum_probs=135.5
Q ss_pred chhhHHHHHHHHHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCC-CCCCCCccCCCCCCCCCCCccccc
Q 011499 245 PAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGE-QRPYPRRCRTGRLPTDTDLLAESR 323 (484)
Q Consensus 245 P~gL~~lReeEL~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs-~~PYPRRcRTGRpptktDP~sEsR 323 (484)
|+||++|||+||++|||||+||||+|||||||||||||||||++++++||||||| +|||||||||||+|+++||.+|||
T Consensus 1 ~~~l~~~R~~eL~~lrG~g~gerk~~dRiYdYd~YnDLG~pd~~~~~~RpvlGgs~~~PYPRR~RTGr~~~~~Dp~sEsr 80 (667)
T PF00305_consen 1 PAGLKKLREEELKNLRGDGTGERKEWDRIYDYDVYNDLGNPDKGPELARPVLGGSKEFPYPRRCRTGRPPTKTDPKSESR 80 (667)
T ss_dssp SGGGHHHHHHHHHHHHTTS-S---TT-----EE-B-SSSBGGGTGCG----BSSSSSS----EE----SBESSCTTSBGC
T ss_pred ChHHHHHHHHHHHHhcCCCCCccccccceeeeecccCCCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCccccCc
Confidence 7899999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred cCCCCCcccCCCCCCChhhhhhhHhhHHHHHHHhhhhhHHHhhccCCCCCCCHHHHHHhhhcCCCCCccccccccccCCc
Q 011499 324 IEKPLPIYVPRDEQFEESKQDAFSAGRLKGALHNLIPLLKASISARNHDFSGFSDIDSLYSEGLLLNLGLKDGLLKKLPL 403 (484)
Q Consensus 324 ~~~~~~~YVPRDE~Fs~~K~~dF~~~~lks~~~~liP~l~~~~~~~~~~F~sF~DI~~LY~~Gi~l~~~~~~~~~~~~p~ 403 (484)
.. .+||||||+|++.|+++|.++++||++|.++|.|++++..+..+|+||+||++||++|++||. +.+.+.+|+
T Consensus 81 ~~---~~YVPRDE~F~~~K~~dF~~~~lks~~~~llP~L~~~~~~~~~eF~sF~dId~LY~~g~~l~~---~~~~~~~~~ 154 (667)
T PF00305_consen 81 SG---DIYVPRDERFSEVKQSDFLANALKSLLHALLPALKSLFDDTPNEFDSFEDIDDLYEEGIKLPT---DLLKKLIPL 154 (667)
T ss_dssp -S---SGGS-GGGS-SCSSGGGHHHHHHHHHHHTHHHHHHHHTTSSTSSCSSHHHHHHHHTTTEE--H---HHHCCHTTS
T ss_pred cc---cccCCccccccchhHHHHHHHHHHHHHHhHHHHHHHHhcccCcccCCHHHHHHHHhccccchh---hHhhhcCcH
Confidence 43 699999999999999999999999999999999999988889999999999999999999983 334455677
Q ss_pred hhhHhhhhccCCcccccCCCcccccCCcc
Q 011499 404 PNVVSKIQESSQGLLKYNSPKILSSKYSV 432 (484)
Q Consensus 404 ~~l~k~i~~~~e~~LKFp~P~vi~~Dk~a 432 (484)
+.+.+.+..+++.+||||+|+|++.|+++
T Consensus 155 ~~~~~~~~~~~~~~~kf~~p~v~~~~~~~ 183 (667)
T PF00305_consen 155 ELLKELFRTDGENILKFPTPQVIERDRFA 183 (667)
T ss_dssp TTCCTTSBETSSSEEB----HHHHCHHHH
T ss_pred HHHHHHHhhcccceeeCCCCccchhhhhc
Confidence 65444445578999999999999987643
No 5
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins. Lipoxygenases are nonheme, nonsulfur iron dioxygenases that act on lipid substrates containing one or more (Z,Z)-1,4-pentadiene moieties. In plants, the immediate products are involved in defense mechanisms against pathogens and may be precursors of metabolic regulators. The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=100.00 E-value=4.2e-44 Score=324.14 Aligned_cols=135 Identities=48% Similarity=0.828 Sum_probs=129.2
Q ss_pred EEEEEEEEEecccccccccccchhhhhhhhcCCcEEEEEeeeecCCCCCCCccccccccccccccccccccceEEEEEEe
Q 011499 98 KVRAVLTVRKNIKEDFKETLVNQFDALTEKIGRNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFL 177 (484)
Q Consensus 98 ~vka~v~v~~~~~~~~~~~~~~~lD~~~dllGk~v~LqLVS~e~dp~tg~~k~s~~a~l~~w~~~~~~~~~~~~y~v~F~ 177 (484)
+|+|+|+||+++++++++.. +++|++.|++|++|+|||||+++||+||++|++++++|++|.++. +++.+|+++|+
T Consensus 2 ~vka~V~v~~k~~~~~~~~~-~~~D~~~~llGk~v~lqLVSs~~d~~tg~~k~~~~~~l~~~~~~~---~~e~~y~~~F~ 77 (137)
T cd01751 2 KVKATVTVMKKNKLDLNDDG-SGLDDLDDLLGRSLLLELVSSELDPKTGKGKKGKAAFLEGWGKSL---AGESAYEAEFE 77 (137)
T ss_pred EEEEEEEEEEeecccccccc-chhhhHHHhhCCeEEEEEEEeeecCCCCCcccccceeeecccccC---CcceEEEEEEE
Confidence 78999999999999999887 899999999999999999999999999999999999999998653 56679999999
Q ss_pred ccCCCCCceEEEEEecCCCcEEEeEEEEeecCC-ceEEEEeccceecCCCCCCceEEeeC
Q 011499 178 VDSNFGTPGAITVANKHQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFFAN 236 (484)
Q Consensus 178 v~~dfG~PGAi~V~N~h~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~~~~~RiFFsn 236 (484)
||++||+||||+|+|+|++||||++|+|+++|+ |+|||+|||||||+++||.+||||+|
T Consensus 78 v~~~fG~pGAi~V~N~h~~EffLksitLe~~p~~g~v~F~CNSWVyp~~~~~~~RiFFsN 137 (137)
T cd01751 78 VPASFGPPGAVLVKNEHHSEFFLKSITLEGFGGSGTITFVCNSWVYPKKDYPDKRIFFPN 137 (137)
T ss_pred eecccCCccEEEEEECCCceEEEEEEEEeCCCCCccEEEEccccCccCCCCCCCCEEccC
Confidence 999999999999999999999999999999997 99999999999999999999999997
No 6
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain.
Probab=99.37 E-value=3.3e-12 Score=108.48 Aligned_cols=83 Identities=41% Similarity=0.664 Sum_probs=65.1
Q ss_pred cEEEEEeeeecCCCCCCCccccccccccccccccccccceEEEEEEeccCCCCCceEEEEEecC-CCcEEEeEEEEeecC
Q 011499 131 NVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKH-QKEFFLETITIEGFA 209 (484)
Q Consensus 131 ~v~LqLVS~e~dp~tg~~k~s~~a~l~~w~~~~~~~~~~~~y~v~F~v~~dfG~PGAi~V~N~h-~~EffL~sItle~~p 209 (484)
+|.|+|++++.| +| .+....++.|. -..+..|+..|+++.++|++++|.|+|++ +.+|||++|+|++.+
T Consensus 20 ~V~l~L~g~~~~--s~---~~~~~~~~~~~-----f~~g~~~~f~v~~~~~lG~l~~v~v~~d~~~~~w~l~~V~V~~~~ 89 (105)
T smart00308 20 SVSLSLVGAEGD--GK---ESKLDYLFKGI-----FARGSTYEFTFDVDEDFGELGAVKIKNEHRHPEWFLKSITVKDLP 89 (105)
T ss_pred eEEEEEEeCCCC--Cc---ceeccccCCcc-----ccCCceEEEEEecccCCCCcEEEEEEeCCCCCCeEEEEEEEEECC
Confidence 799999998876 22 12233444442 23345677788899999999999999999 899999999998876
Q ss_pred C-ceEEEEeccceec
Q 011499 210 C-GPVHFQCNSWVQS 223 (484)
Q Consensus 210 ~-g~i~FpCnSWV~~ 223 (484)
+ ..++|+||+||++
T Consensus 90 ~~~~~~F~c~~Wl~~ 104 (105)
T smart00308 90 TGGKYHFPCNSWVYP 104 (105)
T ss_pred CCCEEEEEcCceeCC
Confidence 5 7899999999986
No 7
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1.13.11.- from EC) are a class of iron-containing dioxygenases which catalyses the hydroperoxidation of lipids, containing a cis,cis-1,4-pentadiene structure. They are common in plants where they may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. In mammals a number of lipoxygenases isozymes are involved in the metabolism of prostaglandins and leukotrienes []. Sequence data is available for the following lipoxygenases: Plant lipoxygenases (1.13.11.12 from EC, IPR001246 from INTERPRO). Plants express a variety of cytosolic isozymes as well as what seems to be a chloroplast isozyme []. Mammalian arachidonate 5-lipoxygenase (1.13.11.34 from EC, IPR001885 from INTERPRO). Mammalian arachidonate 12-lipoxygenase (1.13.11.31 from EC, IPR001885 from INTERPRO). Mammalian erythroid cell-specific 15-lipoxygenase (1.13.11.33 from EC, IPR001885 from INTERPRO). The iron atom in lipoxygenases is bound by four ligands, three of which are histidine residues []. Six histidines are conserved in all lipoxygenase sequences, five of them are found clustered in a stretch of 40 amino acids. This region contains two of the three iron-ligands; the other histidines have been shown [] to be important for the activity of lipoxygenases. This entry represents a domain found in lipoxygenases and other enzymes. It is known as the PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology) domain, is found in a variety of membrane or lipid associated proteins. Structurally, this domain forms a beta-sandwich composed of two sheets of four strands each [, , ]. The most highly conserved regions coincide with the beta-strands, with most of the highly conserved residues being buried within the protein. An exception to this is a surface lysine or arginine that occurs on the surface of the fifth beta-strand of the eukaryotic domains. In pancreatic lipase, the lysine in this position forms a salt bridge with the procolipase protein. The conservation of a charged surface residue may indicate the location of a conserved ligand-binding site. It is thought that this domain may mediate membrane attachment via other protein binding partners.; GO: 0005515 protein binding; PDB: 3FG3_D 3FG1_C 3FG4_D 3DY5_A 2FNQ_B 3O8Y_B 3V99_B 3V92_A 3V98_B 1HPL_A ....
Probab=99.03 E-value=1.3e-09 Score=92.54 Aligned_cols=66 Identities=20% Similarity=0.427 Sum_probs=57.0
Q ss_pred ceEEEEEEeccCCCCCceEEEEEec---CCCcEEEeEEEEeecCC-ceEEEEeccceecCCCCCCceEEe
Q 011499 169 RVHYTAEFLVDSNFGTPGAITVANK---HQKEFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFF 234 (484)
Q Consensus 169 ~~~y~v~F~v~~dfG~PGAi~V~N~---h~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~~~~~RiFF 234 (484)
+...+..|+.+.++|+|.+|.|.++ +...|||++|+|...+. ....|+||+||....+++.+|+||
T Consensus 44 g~~d~F~i~~~~~lG~i~~i~i~~~~~~~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~rvf~ 113 (113)
T PF01477_consen 44 GSTDTFTIETPEDLGEIQKIRIWHDGSGPSPSWYLDSVVVTDGETGRTYTFPCNRWLDPDKDYKTERVFF 113 (113)
T ss_dssp TEEEEEEEEESSCGCSEEEEEEEEESSSSSSEEEEEEEEEEETTTSEEEEEEEEEEESTTEGCSSEEEEE
T ss_pred CceEEeeeeecccCCCCcEEEEEEccCCCccceEEEEEEEEeCCCCcEEEEEcCCEECCCCCCCCccEEC
Confidence 3444445557889999999999999 68899999999988664 789999999999999999999998
No 8
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates.
Probab=98.86 E-value=2.3e-08 Score=86.27 Aligned_cols=64 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred EEEEEEeccCCCCCceEEEEEecCCC---cEEEeEEEEeecCC-ceEEEEeccceecCCCCCCceEEe
Q 011499 171 HYTAEFLVDSNFGTPGAITVANKHQK---EFFLETITIEGFAC-GPVHFQCNSWVQSTKDHPGKRIFF 234 (484)
Q Consensus 171 ~y~v~F~v~~dfG~PGAi~V~N~h~~---EffL~sItle~~p~-g~i~FpCnSWV~~~~~~~~~RiFF 234 (484)
.++..++.+.++|++.+|.|++++.. +|||++|+|++... ..++|+||+||.....++..|+|.
T Consensus 49 ~~~f~v~~~~~lG~i~~v~l~~d~~g~~~~W~l~~V~V~~~~~~~~~~F~~~~Wl~~~~~~~~~r~~~ 116 (116)
T cd00113 49 TDTFQIDLKLDIGDITKVYLRRDGSGLSDGWYCESITVQALGTKKVYTFPVNRWVLGGKWYTSVRSLK 116 (116)
T ss_pred ceEEEEeccCCCcCeEEEEEEECCCCCCCCEEEeEEEEEeCCCCCEEEEEeCCCcccCCCCCceeecC
Confidence 44445568889999999999999865 99999999988775 789999999999998888888863
No 9
>cd02899 PLAT_SR Scavenger receptor protein. A subfamily of PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain. It consists of an eight stranded beta-barrel. The domain can be found in various domain architectures, in case of lipoxygenases, alpha toxin, lipases and polycystin, but also as a single domain or as repeats.The putative function of this domain is to facilitate access to sequestered membrane or micelle bound substrates. This subfamily contains Toxoplasma gondii Scavenger protein TgSR1.
Probab=98.27 E-value=4e-06 Score=74.15 Aligned_cols=79 Identities=13% Similarity=0.249 Sum_probs=55.2
Q ss_pred CcEEEEEeeeecCCCCCCCccccccccccccccccccccceEEEEEEeccCCCCCceEEEEEecC-CCcEEEeEEEEeec
Q 011499 130 RNVVLELVGTEVDPRTKGPKKSREAVLKDWSKKSNVKAERVHYTAEFLVDSNFGTPGAITVANKH-QKEFFLETITIEGF 208 (484)
Q Consensus 130 k~v~LqLVS~e~dp~tg~~k~s~~a~l~~w~~~~~~~~~~~~y~v~F~v~~dfG~PGAi~V~N~h-~~EffL~sItle~~ 208 (484)
-+|.|+|+-++-+ ++.. .|.+ .=.....+.|.++ ++++|++-.|.|.|.. .+.|||+.|+|++.
T Consensus 19 ~~V~i~L~G~~g~--S~~~------~L~~----~F~~G~~d~F~v~---~~dLG~l~~i~l~n~g~~~~Wf~~~V~V~~~ 83 (109)
T cd02899 19 GTIEITLLGSSGR--SNPK------TLSQ----GFYPGSLKRIRFR---AADVGDINAIILSNTALNDPWYCDYVRIKSE 83 (109)
T ss_pred ceEEEEEEECCCC--cCCE------EccC----ccCCCceEEEEEC---ccccCceEEEEEECCCCCCCceeeEEEEECC
Confidence 3588999976532 2222 2221 0011334577655 8999999999998877 67899999999873
Q ss_pred CCceEEEEeccceec
Q 011499 209 ACGPVHFQCNSWVQS 223 (484)
Q Consensus 209 p~g~i~FpCnSWV~~ 223 (484)
.+...+||||+|+..
T Consensus 84 ~g~~~~Fpc~rWla~ 98 (109)
T cd02899 84 DGKVFAFNVKRWIGY 98 (109)
T ss_pred CCCEEEEEcceeeCC
Confidence 346788999999965
No 10
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a unique subfamily of the mammalian lipoxygenases, they catalyze enzymatic lipid peroxidation in complex biological structures via direct dioxygenation of phospholipids and cholesterol esters of biomembranes and plasma lipoproteins. Both types of enzymes are cytosolic but need this domain to access their sequestered membrane or micelle bound substrates.
Probab=98.04 E-value=3e-05 Score=68.42 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=45.3
Q ss_pred ceEEEEEEeccCCCCCceEEEEEecC---CCcEEEeEEEEeecCCceEEEEeccceecC
Q 011499 169 RVHYTAEFLVDSNFGTPGAITVANKH---QKEFFLETITIEGFACGPVHFQCNSWVQST 224 (484)
Q Consensus 169 ~~~y~v~F~v~~dfG~PGAi~V~N~h---~~EffL~sItle~~p~g~i~FpCnSWV~~~ 224 (484)
.+.|.++ .+.++|++-.|.|.+++ ...|||+.|+|++..+...+||||+|+...
T Consensus 49 ~d~F~v~--~~~~lG~l~~i~i~~d~~g~~~~W~l~~V~V~~~~~~~~~F~c~rWl~~~ 105 (113)
T cd01753 49 VDEYKVK--VPEDLGELLLVRLRKRKYLLFDAWFCNYITVTGPGGDEYHFPCYRWIEGY 105 (113)
T ss_pred eeEEEEe--cccCCCCcEEEEEEECCCCCCCCeeecEEEEEcCCCCEEEEEhHHeECCC
Confidence 3466655 78899999999999887 678999999998766677889999999764
No 11
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.78 E-value=0.00017 Score=63.67 Aligned_cols=63 Identities=21% Similarity=0.464 Sum_probs=48.3
Q ss_pred ceEEEEEEeccCCCCCceEEEEEecC---CCcEEEeEEEEeecCC-ceEEEEeccceecCCC-CCCceEEe
Q 011499 169 RVHYTAEFLVDSNFGTPGAITVANKH---QKEFFLETITIEGFAC-GPVHFQCNSWVQSTKD-HPGKRIFF 234 (484)
Q Consensus 169 ~~~y~v~F~v~~dfG~PGAi~V~N~h---~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~-~~~~RiFF 234 (484)
.++|.++ . .++|++-.|.|..+. ...|||+.|+|.+... ...+|+||+|+...+. -.-.|++.
T Consensus 51 ~d~F~i~--~-~~lG~l~~i~i~~d~~g~~~~W~~~~V~V~~~~~~~~~~F~~~~Wl~~~~~dg~~~r~~~ 118 (120)
T cd01756 51 TDKFTVE--A-VDLGKLKKIRIGHDNSGLGAGWFLDKVEIREPGTGDEYTFPCNRWLDKDEDDGQIVRELY 118 (120)
T ss_pred eEEEEEE--e-cCCCCeEEEEEEECCCCCCCCcEEeEEEEEECCCceEEEEEeCCccCCCCCCCEEEEEEE
Confidence 3467666 5 799999999999877 4689999999987664 6788999999987653 22235543
No 12
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins. Polycystins are a large family of membrane proteins composed of multiple domains, present in fish, invertebrates, mammals, and humans that are widely expressed in various cell types and whose biological functions remain poorly defined. In human, mutations in polycystin-1 (PKD1) and polycystin-2 (PKD2) have been shown to be the cause for autosomal dominant polycystic kidney disease (ADPKD). The generally proposed function of PLAT/LH2 domains is to mediate interaction with lipids or membrane bound proteins.
Probab=97.75 E-value=0.00024 Score=62.86 Aligned_cols=55 Identities=13% Similarity=0.330 Sum_probs=43.8
Q ss_pred EEEEEeccCCCCCceEEEEEecC---CCcEEEeEEEEeecCC-ceEEEEeccceecCCC
Q 011499 172 YTAEFLVDSNFGTPGAITVANKH---QKEFFLETITIEGFAC-GPVHFQCNSWVQSTKD 226 (484)
Q Consensus 172 y~v~F~v~~dfG~PGAi~V~N~h---~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~ 226 (484)
++..+..+.++|.+-.|.|..+. ...|||++|+|.+... ...+|+||+|+...+.
T Consensus 51 ~~f~i~~~~dlG~l~~i~l~hd~~g~~~~W~l~~V~V~~~~t~~~~~F~~~rWl~~~~~ 109 (120)
T cd01752 51 DSFLLTTPFPLGELQSIRLWHDNSGLSPSWYLSRVIVRDLQTGKKWFFLCNDWLSVEEG 109 (120)
T ss_pred eEEEecCccCCCCccEEEEEECCCCCCCCeEEEEEEEEECCCCcEEEEEeCcEECCcCC
Confidence 33344477899999999998766 5689999999987654 6788999999987643
No 13
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family. PLAT/LH2 domains consists of an eight stranded beta-barrel. In RabIP1 this domain may participate in lipid-mediated modulation of Rab6IP1's function via it's generally proposed function of mediating interaction with lipids or membrane bound proteins.
Probab=97.75 E-value=0.0002 Score=63.99 Aligned_cols=47 Identities=15% Similarity=0.446 Sum_probs=41.0
Q ss_pred CCCCCceEEEEEecC---CCcEEEeEEEEeecCC-ceEEEEeccceecCCC
Q 011499 180 SNFGTPGAITVANKH---QKEFFLETITIEGFAC-GPVHFQCNSWVQSTKD 226 (484)
Q Consensus 180 ~dfG~PGAi~V~N~h---~~EffL~sItle~~p~-g~i~FpCnSWV~~~~~ 226 (484)
.++|..-.|.|...+ ...|||+.|+|++.+. ...+||||+|+....+
T Consensus 50 ~~LG~L~~irIwHDnsG~~~~Wfl~~V~V~d~~t~~~~~FpC~rWLa~~~~ 100 (114)
T cd01757 50 QNLGKLTTVQIGHDNSGLLAKWLVEYVMVRNEITGHTYKFPCGRWLGEGVD 100 (114)
T ss_pred CCcCCcEEEEEEECCCCCCCCeeeeEEEEEeCCCCCEEEEecCceecCCCC
Confidence 999999999999877 6789999999998765 6789999999987543
No 14
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function. Many of its members are stress induced. In general, PLAT/LH2 consists of an eight stranded beta-barrel and it's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=97.57 E-value=0.00028 Score=64.25 Aligned_cols=56 Identities=5% Similarity=0.178 Sum_probs=46.0
Q ss_pred ceEEEEEEeccCCCCCceEEEEEecC---CCcEEEeEEEEeecCC----ceEEEEeccceecCCC
Q 011499 169 RVHYTAEFLVDSNFGTPGAITVANKH---QKEFFLETITIEGFAC----GPVHFQCNSWVQSTKD 226 (484)
Q Consensus 169 ~~~y~v~F~v~~dfG~PGAi~V~N~h---~~EffL~sItle~~p~----g~i~FpCnSWV~~~~~ 226 (484)
.+.|.++ .+.+.|++-.|.|+... ...|||..|+|.+... ...+||||+|+...++
T Consensus 57 ~d~F~v~--~~~~lG~l~~irI~HDn~G~~p~W~l~~V~V~d~~~~~~~~~~~F~c~rWLa~d~~ 119 (129)
T cd01754 57 LDRFSGR--GPCLPSPPCWMNLTSDGTGNHPGWYVNYVEVTQAGQHAPCMQHLFAVEQWLATDES 119 (129)
T ss_pred ccEEEEE--eccCCCCeEEEEEEECCCCCCCCcccCEEEEEeCCCCCcCcEEEEEecEeccCCCC
Confidence 4578777 78889999999999766 6789999999987643 3799999999976654
No 15
>cd01755 PLAT_lipase PLAT/ LH2 domain present in connection with a lipase domain. This family contains two major subgroups, the lipoprotein lipase (LPL) and the pancreatic triglyceride lipase. LPL is a key enzyme in catabolism of plasma lipoprotein triglycerides (TGs). The central role of triglyceride lipases is in energy production. In general, PLAT/LH2 domain's proposed function is to mediate interaction with lipids or membrane bound proteins.
Probab=55.16 E-value=68 Score=28.61 Aligned_cols=53 Identities=8% Similarity=0.061 Sum_probs=40.7
Q ss_pred ccceEEEEEEeccCCCCCceEEEEEecCC----------CcEEEeEEEEeecCCceEEEEecc
Q 011499 167 AERVHYTAEFLVDSNFGTPGAITVANKHQ----------KEFFLETITIEGFACGPVHFQCNS 219 (484)
Q Consensus 167 ~~~~~y~v~F~v~~dfG~PGAi~V~N~h~----------~EffL~sItle~~p~g~i~FpCnS 219 (484)
..+..|+.-+..+.++|..-.|.++-+.. ..||++.|+|++..++.-..-|.+
T Consensus 43 ~~g~~~sfli~t~~~lG~l~~v~~~~dn~~~~~~~~~~~p~~~~~~I~Vq~get~~~~~FC~~ 105 (120)
T cd01755 43 KPNKTYSFLIDTEVDIGDLLKVKFKWENNVINSNSGETLPKLGARKIRVKSGETQKKFTFCSQ 105 (120)
T ss_pred cCCCEEEEEEEcCCCccceEEEEEEEcCCCcccccccCCCcEEEEEEEEEECCCCCEEEEECC
Confidence 34456776777889999998888876542 379999999998877777777876
No 16
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=45.00 E-value=13 Score=35.53 Aligned_cols=49 Identities=29% Similarity=0.414 Sum_probs=32.1
Q ss_pred CCchhhHHHHHHHHHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCCCCCCCCccC
Q 011499 243 ETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGEQRPYPRRCR 308 (484)
Q Consensus 243 eTP~gL~~lReeEL~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs~~PYPRRcR 308 (484)
+.++-..+..-=+|++-- .+=|++|-|||+.-| ..+.|.-||-. ||||=
T Consensus 88 ~~~a~~vK~~~i~iEe~h--------plGRL~DiDV~~~~g-----~~iSR~~lg~~----~R~Cl 136 (170)
T PF03802_consen 88 DGDAEEVKRIMIEIEESH--------PLGRLFDIDVLDPDG-----KQISREDLGLP----PRRCL 136 (170)
T ss_pred CCCHHHHHHHHHHHHccC--------cchheEEEeeecCCC-----CccCHHHcCCC----CCccc
Confidence 334555555555665543 344899999995433 44778888876 88884
No 17
>KOG2080 consensus Uncharacterized conserved protein, contains DENN and RUN domains [Signal transduction mechanisms]
Probab=27.15 E-value=26 Score=41.55 Aligned_cols=50 Identities=18% Similarity=0.482 Sum_probs=36.2
Q ss_pred EEEeccCCCCCceEEEEEecC---CCcEEEeEEEEee-cCCceEEEEeccceecC
Q 011499 174 AEFLVDSNFGTPGAITVANKH---QKEFFLETITIEG-FACGPVHFQCNSWVQST 224 (484)
Q Consensus 174 v~F~v~~dfG~PGAi~V~N~h---~~EffL~sItle~-~p~g~i~FpCnSWV~~~ 224 (484)
..|+. .++|..--+.|-... ...||++.|.+.. +-+.++.|||++|.-+.
T Consensus 1015 f~F~~-kNLG~LtT~rIGHdnS~~~~kW~vEyV~vRNEiTG~TYKFPCGrw~G~g 1068 (1295)
T KOG2080|consen 1015 FKFDH-KNLGILSTLRIGHQQSEKPVQWFLEYVLVRNEITGQTYKFPCGRWFGNG 1068 (1295)
T ss_pred eEEec-cccceeeeEEecccCCCcchHHHHHHhhhhceeccceeccccccccCCc
Confidence 34444 789988888776443 3469999987743 44578999999999764
No 18
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=27.07 E-value=30 Score=33.08 Aligned_cols=50 Identities=28% Similarity=0.417 Sum_probs=29.3
Q ss_pred CCCchhhHHHHHHHHHHhhCCCCCcccccCeeeecccccCCCCCCCCCCCcccccCCCCCCCCCccC
Q 011499 242 SETPAGLRALREKELKDIRGTGKGVRKLSDRIYDYDVYNDLGNPDRGSEFVRPSLGGEQRPYPRRCR 308 (484)
Q Consensus 242 seTP~gL~~lReeEL~~LRGdGtGeRK~~DRIYDYdvYNDLGnPDk~~~l~RPVLGGs~~PYPRRcR 308 (484)
-+.|+.-.+..-=+|++-- .-=|++|-|||+.-| ..+.|--||=. ||||=
T Consensus 85 v~~~a~~vK~~~i~iEe~h--------plGRL~DlDV~~~~g-----~~iSR~~lg~~----~R~Cl 134 (165)
T TIGR03124 85 VDAPALELKRLMIKLEESH--------PLGRLWDIDVLDADG-----KSLSRTDLGLP----PRKCL 134 (165)
T ss_pred eCCCHHHHHHHHHHHHhCC--------chhhheeheeecCCC-----CCcCHHHcCCC----CCeee
Confidence 3445444555555555433 122899999996333 34667766643 88884
No 19
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=22.49 E-value=1.5e+02 Score=32.01 Aligned_cols=69 Identities=23% Similarity=0.245 Sum_probs=47.6
Q ss_pred eeecccccCCCCCCCCCCCcccccCCCCCCCCCccCCCCCCCCCCCccccccCCCCCcccCCCCCCChhhhhhhHhhHHH
Q 011499 273 IYDYDVYNDLGNPDRGSEFVRPSLGGEQRPYPRRCRTGRLPTDTDLLAESRIEKPLPIYVPRDEQFEESKQDAFSAGRLK 352 (484)
Q Consensus 273 IYDYdvYNDLGnPDk~~~l~RPVLGGs~~PYPRRcRTGRpptktDP~sEsR~~~~~~~YVPRDE~Fs~~K~~dF~~~~lk 352 (484)
+|-|-|--|-| ||++|-| -|-|+|-++.+|.. .+. ++-|=+--.=.+-|...|+...+-
T Consensus 250 ~YCWCV~edTG---------rpipGTS-------tr~~~PkCe~tar~-a~d----p~kvR~l~gC~e~KKteFL~~Ll~ 308 (421)
T KOG4578|consen 250 GYCWCVLEDTG---------RPIPGTS-------TRYGKPKCEETART-AVD----PKKVRRLNGCPEKKKTEFLTSLLD 308 (421)
T ss_pred ceEEEEeecCC---------CccCCcc-------cccCCCCccccccc-ccc----cccccccCCCCcchhhHHHHHHHH
Confidence 58888877756 9999998 36688888877652 111 244555556678899999877776
Q ss_pred HHHHhhhhhH
Q 011499 353 GALHNLIPLL 362 (484)
Q Consensus 353 s~~~~liP~l 362 (484)
++..-+|++.
T Consensus 309 aL~Tdmv~s~ 318 (421)
T KOG4578|consen 309 ALKTDMVMSG 318 (421)
T ss_pred HHhhhhhhhc
Confidence 6666666544
No 20
>PF06232 ATS3: Embryo-specific protein 3, (ATS3); InterPro: IPR010417 This is a family of plant seed-specific proteins identified in Arabidopsis thaliana (Mouse-ear cress). ATS3 is expressed in a pattern similar to the Arabidopsis seed storage protein genes [].
Probab=20.72 E-value=1.5e+02 Score=27.58 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=38.1
Q ss_pred eEEEEEEeccCCCCCceEEEEEecCCCcEEEeEEEEeecCCceEEEEeccceec
Q 011499 170 VHYTAEFLVDSNFGTPGAITVANKHQKEFFLETITIEGFACGPVHFQCNSWVQS 223 (484)
Q Consensus 170 ~~y~v~F~v~~dfG~PGAi~V~N~h~~EffL~sItle~~p~g~i~FpCnSWV~~ 223 (484)
+.|++. -+. ++.+=-+.+.....+.|+.++|+|.+-...+++|.-|.||..
T Consensus 66 DtF~v~--G~C-~~~IC~lyL~r~G~dGW~Pe~V~Iy~~~~~~~~F~~~~~lp~ 116 (125)
T PF06232_consen 66 DTFQVT--GPC-LYQICYLYLYRSGSDGWKPEWVQIYGSGSKPVTFYFNTFLPN 116 (125)
T ss_pred ceeEee--ccc-CCcccEEEEEEccCCCCEeCeEEEEEcCCCCeEEECCCcCCC
Confidence 567765 333 335556666666678999999999775558999999999965
Done!