Query 011500
Match_columns 484
No_of_seqs 222 out of 1684
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 02:03:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 4.6E-61 1E-65 490.3 44.5 403 7-436 5-430 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 2.6E-58 5.5E-63 472.1 39.4 308 69-437 114-451 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 1.1E-55 2.5E-60 436.7 31.8 300 70-431 5-317 (317)
4 KOG1339 Aspartyl protease [Pos 100.0 4.4E-55 9.5E-60 444.2 36.5 344 68-435 39-397 (398)
5 cd05490 Cathepsin_D2 Cathepsin 100.0 2.6E-55 5.7E-60 435.8 31.9 306 71-431 2-325 (325)
6 cd05477 gastricsin Gastricsins 100.0 9.3E-55 2E-59 430.6 33.5 302 73-432 1-318 (318)
7 cd05486 Cathespin_E Cathepsin 100.0 2.8E-55 6.1E-60 433.7 29.7 296 76-431 1-316 (316)
8 cd06096 Plasmepsin_5 Plasmepsi 100.0 8.3E-55 1.8E-59 431.8 32.6 303 74-435 2-326 (326)
9 cd06098 phytepsin Phytepsin, a 100.0 1.3E-54 2.8E-59 428.8 32.2 292 70-431 5-317 (317)
10 cd05487 renin_like Renin stimu 100.0 2.2E-54 4.8E-59 429.0 32.4 305 70-432 3-326 (326)
11 cd05472 cnd41_like Chloroplast 100.0 7.3E-54 1.6E-58 420.6 33.2 289 75-434 1-299 (299)
12 cd05488 Proteinase_A_fungi Fun 100.0 1.2E-53 2.6E-58 422.6 31.7 301 70-431 5-320 (320)
13 cd05485 Cathepsin_D_like Cathe 100.0 1.4E-53 3E-58 423.5 31.8 306 70-431 6-329 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 5.2E-53 1.1E-57 429.7 32.4 301 70-433 134-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.3E-52 2.8E-57 426.0 32.9 299 70-433 133-449 (450)
16 cd05473 beta_secretase_like Be 100.0 1.1E-51 2.5E-56 415.6 31.1 315 75-438 3-351 (364)
17 cd05475 nucellin_like Nucellin 100.0 3.6E-50 7.9E-55 388.7 31.4 264 74-434 1-273 (273)
18 cd05489 xylanase_inhibitor_I_l 100.0 6.9E-50 1.5E-54 399.5 33.2 325 82-432 2-361 (362)
19 cd05476 pepsin_A_like_plant Ch 100.0 5.8E-50 1.3E-54 385.9 29.7 253 75-434 1-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 6.9E-50 1.5E-54 388.2 26.4 265 76-431 1-278 (278)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.4E-49 5.3E-54 392.2 22.3 300 75-432 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 9.8E-48 2.1E-52 376.8 28.7 266 75-432 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 6E-45 1.3E-49 354.7 29.2 268 76-431 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 5.3E-29 1.1E-33 221.3 15.5 162 76-261 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 2.6E-23 5.6E-28 184.7 14.7 151 278-431 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 2.8E-22 6E-27 166.2 11.8 108 78-223 1-109 (109)
27 cd05483 retropepsin_like_bacte 97.8 4.1E-05 8.9E-10 61.1 6.4 93 75-225 2-94 (96)
28 cd05479 RP_DDI RP_DDI; retrope 96.5 0.015 3.3E-07 48.9 8.1 104 286-429 21-124 (124)
29 TIGR02281 clan_AA_DTGA clan AA 96.2 0.017 3.7E-07 48.3 7.1 31 72-104 8-38 (121)
30 PF08284 RVP_2: Retroviral asp 95.6 0.058 1.3E-06 46.0 7.8 97 308-431 35-131 (135)
31 PF13650 Asp_protease_2: Aspar 95.3 0.11 2.3E-06 40.4 8.0 26 78-105 1-26 (90)
32 cd05479 RP_DDI RP_DDI; retrope 93.8 0.24 5.3E-06 41.5 6.9 33 72-106 13-45 (124)
33 cd05484 retropepsin_like_LTR_2 92.8 0.36 7.9E-06 37.9 6.2 29 76-106 1-29 (91)
34 TIGR02281 clan_AA_DTGA clan AA 92.4 0.42 9E-06 39.9 6.3 36 276-327 9-44 (121)
35 cd06095 RP_RTVL_H_like Retrope 90.2 1.5 3.2E-05 34.0 7.0 26 79-106 2-27 (86)
36 TIGR03698 clan_AA_DTGF clan AA 89.0 2.4 5.3E-05 34.4 7.7 24 404-427 84-107 (107)
37 PF13975 gag-asp_proteas: gag- 87.2 0.99 2.1E-05 33.7 4.0 35 72-108 5-39 (72)
38 PF12384 Peptidase_A2B: Ty3 tr 85.2 3.6 7.7E-05 35.8 6.7 84 307-419 47-132 (177)
39 PF13650 Asp_protease_2: Aspar 85.1 1.2 2.7E-05 34.2 3.9 29 286-327 3-31 (90)
40 PF13975 gag-asp_proteas: gag- 81.5 2.5 5.5E-05 31.5 4.1 29 286-327 13-41 (72)
41 cd05484 retropepsin_like_LTR_2 81.3 2.5 5.4E-05 33.1 4.2 31 285-328 4-34 (91)
42 PF00077 RVP: Retroviral aspar 79.7 2.7 5.9E-05 33.3 4.0 28 77-106 7-34 (100)
43 cd05483 retropepsin_like_bacte 77.7 4.1 8.8E-05 31.7 4.4 30 285-327 6-35 (96)
44 COG3577 Predicted aspartyl pro 77.2 8.4 0.00018 34.9 6.5 76 71-187 101-176 (215)
45 cd06095 RP_RTVL_H_like Retrope 76.7 3.4 7.3E-05 32.0 3.6 29 286-327 3-31 (86)
46 PF02160 Peptidase_A3: Caulifl 76.4 3.3 7.1E-05 37.6 3.8 96 306-431 21-117 (201)
47 cd06094 RP_Saci_like RP_Saci_l 74.3 27 0.00059 27.2 7.8 22 304-325 8-29 (89)
48 cd05482 HIV_retropepsin_like R 70.9 5.4 0.00012 31.1 3.4 25 79-105 2-26 (87)
49 PF11925 DUF3443: Protein of u 70.4 13 0.00027 37.0 6.5 31 75-105 23-58 (370)
50 PF00077 RVP: Retroviral aspar 64.9 7.3 0.00016 30.8 3.2 27 285-324 9-35 (100)
51 PF09668 Asp_protease: Asparty 58.8 11 0.00024 31.5 3.2 30 285-327 28-57 (124)
52 cd05481 retropepsin_like_LTR_1 55.4 14 0.00031 29.0 3.2 22 307-328 12-33 (93)
53 KOG0012 DNA damage inducible p 54.9 63 0.0014 32.0 8.0 106 284-433 238-347 (380)
54 COG3577 Predicted aspartyl pro 53.5 20 0.00043 32.6 4.1 35 276-326 103-137 (215)
55 TIGR03698 clan_AA_DTGF clan AA 49.2 58 0.0012 26.3 6.0 27 77-103 1-32 (107)
56 PF08194 DIM: DIM protein; In 46.0 35 0.00076 21.6 3.2 17 4-20 3-19 (36)
57 PRK14750 kdpF potassium-transp 40.6 36 0.00077 20.2 2.4 22 462-483 5-26 (29)
58 PF12384 Peptidase_A2B: Ty3 tr 40.1 38 0.00082 29.7 3.6 26 79-104 36-61 (177)
59 COG5550 Predicted aspartyl pro 39.4 21 0.00046 29.6 1.9 21 308-328 29-50 (125)
60 PF09668 Asp_protease: Asparty 38.1 53 0.0011 27.5 4.1 38 73-112 22-59 (124)
61 PHA03054 IMV membrane protein; 33.9 43 0.00093 24.6 2.5 29 455-483 43-71 (72)
62 PF12575 DUF3753: Protein of u 33.5 56 0.0012 24.3 3.1 31 452-482 40-70 (72)
63 PRK14756 hypothetical protein; 32.9 56 0.0012 19.3 2.4 23 460-482 7-29 (29)
64 PHA02844 putative transmembran 28.7 61 0.0013 24.1 2.6 26 457-482 45-70 (75)
65 PHA02819 hypothetical protein; 28.2 58 0.0013 24.0 2.4 27 456-482 42-68 (71)
66 PHA02975 hypothetical protein; 28.0 55 0.0012 23.9 2.3 27 456-482 40-66 (69)
67 cd05480 NRIP_C NRIP_C; putativ 27.3 70 0.0015 25.6 2.9 22 403-424 82-103 (103)
68 PRK14748 kdpF potassium-transp 27.2 84 0.0018 18.7 2.5 21 463-483 6-26 (29)
69 PHA02650 hypothetical protein; 24.8 71 0.0015 24.1 2.4 26 457-482 46-71 (81)
70 cd00303 retropepsin_like Retro 23.6 1.2E+02 0.0025 21.7 3.7 20 307-326 11-30 (92)
71 cd05475 nucellin_like Nucellin 23.1 1E+02 0.0023 29.3 4.1 32 74-105 157-194 (273)
72 PF13956 Ibs_toxin: Toxin Ibs, 20.8 58 0.0013 17.1 0.9 12 5-16 2-13 (19)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=4.6e-61 Score=490.31 Aligned_cols=403 Identities=28% Similarity=0.470 Sum_probs=309.2
Q ss_pred HHHHHHHHHHHhhccccCcceeEEeEeecCC------Cc----ccHHHHHHHhHHHHHHHhhc--cCCCCCCCCCcCCcc
Q 011500 7 NCLCIVLIATAAVGGVSSNHGVFSVKYRYAG------RE----RSLSLLKEHDARRQQRILAG--VDLPLGGSSRPDGVG 74 (484)
Q Consensus 7 ~~~~ll~l~~a~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~r~~~~~~~--~~~p~~~~~~~~~~~ 74 (484)
+.++|+.+.+.++..+.....++++.|+.++ +. ..+.+..+++++|.+++.+. ...|+.. +....++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~ 83 (431)
T PLN03146 5 LALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDASPNDPQS-DLISNGG 83 (431)
T ss_pred HHHHHHHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhccccCCcccc-CcccCCc
Confidence 3344444444444555566678888776642 11 22444555666665554321 2234432 2234678
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
.|+++|+||||||++.|++||||+++||+|.+|..|..+. ++.|||++|+||+.++|+++.|..++. ...|..
T Consensus 84 ~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~-----~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~ 156 (431)
T PLN03146 84 EYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV-----SPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSD 156 (431)
T ss_pred cEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC-----CCcccCCCCCCCcccCCCCcccccCCC--CCCCCC
Confidence 9999999999999999999999999999999999998654 379999999999999999999987643 235766
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHHHH
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L 234 (484)
++.|.|.+.|+||+.+.|.+++|+|+|++.... ...++++.|||++...+.|. ...+||||||++..|++.||
T Consensus 157 ~~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~---~~~v~~~~FGc~~~~~g~f~----~~~~GilGLG~~~~Sl~sql 229 (431)
T PLN03146 157 ENTCTYSYSYGDGSFTKGNLAVETLTIGSTSGR---PVSFPGIVFGCGHNNGGTFD----EKGSGIVGLGGGPLSLISQL 229 (431)
T ss_pred CCCCeeEEEeCCCCceeeEEEEEEEEeccCCCC---cceeCCEEEeCCCCCCCCcc----CCCceeEecCCCCccHHHHh
Confidence 677999999999998899999999999875322 12356899999998776552 25799999999999999999
Q ss_pred HhcCCCCcceeeeecCC----CCcceEEeCCcCC---CCceEeeCCCC--CCceEEEEeEEEEccEEeecCCcccccCCC
Q 011500 235 ASSGGVRKMFAHCLDGI----NGGGIFAIGHVVQ---PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDN 305 (484)
Q Consensus 235 ~~~g~i~~~FSl~l~~~----~~~G~l~~Ggid~---~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~ 305 (484)
..+ +.++||+||.+. ...|.|+||+..+ ..+.|+|++.+ +.+|.|++++|+||++.+.++...+...+.
T Consensus 230 ~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~ 307 (431)
T PLN03146 230 GSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEE 307 (431)
T ss_pred hHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCC
Confidence 763 556999999752 2478999999642 24889999843 468999999999999998877665543345
Q ss_pred CcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc-cCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEc
Q 011500 306 KGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT-VHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF 384 (484)
Q Consensus 306 ~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~ 384 (484)
..+||||||++++||+++|+++.+++.+......... ......||..... ..+|+|+|+| +|+.+.|+|++|+++.
T Consensus 308 g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F-~Ga~~~l~~~~~~~~~ 384 (431)
T PLN03146 308 GNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHF-TGADVKLQPLNTFVKV 384 (431)
T ss_pred CcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEE-CCCeeecCcceeEEEc
Confidence 6799999999999999999999999887664322111 1123589874322 4689999999 7899999999999986
Q ss_pred -CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCC
Q 011500 385 -EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSS 436 (484)
Q Consensus 385 -~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~ 436 (484)
++..|+++.... +.||||+.|||++|++||++++|||||+.+|+.
T Consensus 385 ~~~~~Cl~~~~~~-------~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 385 SEDLVCFAMIPTS-------SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred CCCcEEEEEecCC-------CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 567899887542 359999999999999999999999999999973
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=2.6e-58 Score=472.08 Aligned_cols=308 Identities=21% Similarity=0.383 Sum_probs=253.5
Q ss_pred CcCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 69 RPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 69 ~~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
.++.+.+|+++|+||||||+|.|+|||||+++||++..|.. |.. ++.|||++|+||+.+.+..
T Consensus 114 ~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~-------~~~yd~s~SSTy~~~~~~~-------- 178 (482)
T PTZ00165 114 LNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAP-------HRKFDPKKSSTYTKLKLGD-------- 178 (482)
T ss_pred ccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccc-------cCCCCccccCCcEecCCCC--------
Confidence 36889999999999999999999999999999999999863 544 4699999999999853210
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
+...+.++|++|+ +.|.+++|+|++|+..++ ++.||++...++..+ ....+|||||||++
T Consensus 179 ---------~~~~~~i~YGsGs-~~G~l~~DtV~ig~l~i~--------~q~FG~a~~~s~~~f--~~~~~DGILGLg~~ 238 (482)
T PTZ00165 179 ---------ESAETYIQYGTGE-CVLALGKDTVKIGGLKVK--------HQSIGLAIEESLHPF--ADLPFDGLVGLGFP 238 (482)
T ss_pred ---------ccceEEEEeCCCc-EEEEEEEEEEEECCEEEc--------cEEEEEEEecccccc--ccccccceeecCCC
Confidence 0125779999998 789999999999986543 799999998765322 34578999999987
Q ss_pred C---------CcHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC------CceEeeCCCCCCceEEEEeEEEEc
Q 011500 227 N---------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP------EVNKTPLVPNQPHYSINMTAVQVG 289 (484)
Q Consensus 227 ~---------~s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~------~~~~~p~~~~~~~w~v~l~~i~v~ 289 (484)
. .+++++|++||++ +++||+||.+. ..+|+++|||+|+. ++.|+|++ ...+|+|++++|+||
T Consensus 239 ~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vg 317 (482)
T PTZ00165 239 DKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILID 317 (482)
T ss_pred cccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEEC
Confidence 5 3689999999999 69999999864 45799999999853 48999997 578999999999999
Q ss_pred cEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECC
Q 011500 290 LDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFEN 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~g 369 (484)
++.+... ..+..+++||||+++++|.+++++|.+++++. .+|. ..+.+|+|+|+| +
T Consensus 318 g~~~~~~------~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~------------~~C~-----~~~~lP~itf~f-~ 373 (482)
T PTZ00165 318 GKSLGFC------DRKCKAAIDTGSSLITGPSSVINPLLEKIPLE------------EDCS-----NKDSLPRISFVL-E 373 (482)
T ss_pred CEEeeec------CCceEEEEcCCCccEeCCHHHHHHHHHHcCCc------------cccc-----ccccCCceEEEE-C
Confidence 9877542 23567999999999999999999999887542 2573 345689999999 6
Q ss_pred Cc-----EEEECCCeeeEEc-----CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCC
Q 011500 370 SV-----SLKVYPHEYLFPF-----EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSS 437 (484)
Q Consensus 370 g~-----~~~l~p~~y~~~~-----~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~ 437 (484)
|. +|+++|++|+++. ++..|+ ++...+... ..++.||||++|||++|+|||.+|+|||||+++|+..
T Consensus 374 g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~-~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 374 DVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPA-PRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred CCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCC-CCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 54 8999999999873 456895 888765422 2246899999999999999999999999999998754
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.1e-55 Score=436.71 Aligned_cols=300 Identities=26% Similarity=0.427 Sum_probs=249.3
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+..|+++|+||||||++.|+|||||+++||+|..|..|. |..++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~-----c~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 5 NYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQA-----CSNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred cccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCccc-----ccccCcCCCCCCcceeeCC--------------
Confidence 567899999999999999999999999999999998886421 2234699999999999854
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC--
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN-- 227 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~-- 227 (484)
+.|.+.|++|+ +.|.+++|+|++|+..+. ++.|||+....+.+. .....+||||||++.
T Consensus 66 --------~~~~~~yg~gs-~~G~~~~D~v~ig~~~i~--------~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s 126 (317)
T cd05478 66 --------QPLSIQYGTGS-MTGILGYDTVQVGGISDT--------NQIFGLSETEPGSFF--YYAPFDGILGLAYPSIA 126 (317)
T ss_pred --------cEEEEEECCce-EEEEEeeeEEEECCEEEC--------CEEEEEEEecCcccc--ccccccceeeeccchhc
Confidence 68999999998 799999999999986533 799999987766542 234589999999864
Q ss_pred ----CcHHHHHHhcCCC-CcceeeeecCCC-CcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 228 ----SSMISQLASSGGV-RKMFAHCLDGIN-GGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 228 ----~s~~~~L~~~g~i-~~~FSl~l~~~~-~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
.+++++|+++|+| +++||+||.+.. .+|.|+|||+|++ +++|+|+. .+.+|.|.+++++||++.+...
T Consensus 127 ~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~- 204 (317)
T cd05478 127 SSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVT-AETYWQITVDSVTINGQVVACS- 204 (317)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECC-CCcEEEEEeeEEEECCEEEccC-
Confidence 3589999999999 699999999752 5689999999865 48999997 5789999999999999987532
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.+..+++||||+++++|++++++|++++++... ....+.++| .....+|+|+|+| +|++++|||
T Consensus 205 ------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~----~~~~~~~~C-----~~~~~~P~~~f~f-~g~~~~i~~ 268 (317)
T cd05478 205 ------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN----QNGEMVVNC-----SSISSMPDVVFTI-NGVQYPLPP 268 (317)
T ss_pred ------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc----cCCcEEeCC-----cCcccCCcEEEEE-CCEEEEECH
Confidence 245799999999999999999999999865432 111223455 4445689999999 899999999
Q ss_pred CeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 378 ~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
++|+.+. ...|+ +|...+ ..+.||||++|||++|+|||++|+|||||+
T Consensus 269 ~~y~~~~-~~~C~~~~~~~~-----~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 269 SAYILQD-QGSCTSGFQSMG-----LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred HHheecC-CCEEeEEEEeCC-----CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 9999875 56897 676643 136799999999999999999999999996
No 4
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-55 Score=444.17 Aligned_cols=344 Identities=35% Similarity=0.626 Sum_probs=283.2
Q ss_pred CCcCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC-CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 68 SRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK-ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 68 ~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~-~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
...+.+++|+++|.||||||+|.|++||||+++||+|..|. .|..+.. +.|||++|+||+.+.|+++.|...+.
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~~-----~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQHN-----PIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccCC-----CccCccccccccccCCCCcccccccc
Confidence 34567889999999999999999999999999999999999 7986421 34999999999999999999999865
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
. |..++.|.|.+.|+||++++|.+++|+|++++.+ ...++++.|||+..+.+. +... .+.|||||||++
T Consensus 114 ~----~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-----~~~~~~~~FGc~~~~~g~-~~~~-~~~dGIlGLg~~ 182 (398)
T KOG1339|consen 114 S----CSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-----SLPVPNQTFGCGTNNPGS-FGLF-AAFDGILGLGRG 182 (398)
T ss_pred C----cccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-----ccccccEEEEeeecCccc-cccc-cccceEeecCCC
Confidence 3 8888999999999998789999999999998843 123457999999999876 2212 678999999999
Q ss_pred CCcHHHHHHhcCCCCcceeeeecCCC----CcceEEeCCcCCCC----ceEeeCCCCCC-ceEEEEeEEEEccEEeecCC
Q 011500 227 NSSMISQLASSGGVRKMFAHCLDGIN----GGGIFAIGHVVQPE----VNKTPLVPNQP-HYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 227 ~~s~~~~L~~~g~i~~~FSl~l~~~~----~~G~l~~Ggid~~~----~~~~p~~~~~~-~w~v~l~~i~v~~~~~~~~~ 297 (484)
..++..|+...+...++||+||.+.+ .+|.|+||++|+.+ +.|+|++.... +|+|.+++|.|+++. .++.
T Consensus 183 ~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~-~~~~ 261 (398)
T KOG1339|consen 183 SLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKR-PIGS 261 (398)
T ss_pred CccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCcc-CCCc
Confidence 99999999987777679999999863 47999999999764 78999985444 999999999999987 6555
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
..+..+ ..++|+||||++++||.++|++|.+++.+.... ......+...|+...... ..+|+|+|+|.+|+.|.+++
T Consensus 262 ~~~~~~-~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~ 338 (398)
T KOG1339|consen 262 SLFCTD-GGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPP 338 (398)
T ss_pred ceEecC-CCCEEEECCcceeeccHHHHHHHHHHHHhheec-cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCc
Confidence 555433 688999999999999999999999999986410 112223446898655433 45999999995489999999
Q ss_pred CeeeEEcCCe-E-EEEEeccCcccCCCCCeeeechhhhceeEEEEeCC-CCEEEEEe--CCCC
Q 011500 378 HEYLFPFEDL-W-CIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLE-NQVIGWTE--YNCS 435 (484)
Q Consensus 378 ~~y~~~~~~~-~-C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~-~~rIGfA~--~~c~ 435 (484)
++|+++.+.. . |+++..... ....||||+.|||+++++||.. ++|||||+ .+|.
T Consensus 339 ~~y~~~~~~~~~~Cl~~~~~~~----~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 339 KNYLVEVSDGGGVCLAFFNGMD----SGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred cceEEEECCCCCceeeEEecCC----CCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9999987332 2 987665431 1158999999999999999999 99999999 5564
No 5
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.6e-55 Score=435.82 Aligned_cols=306 Identities=23% Similarity=0.381 Sum_probs=247.3
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
+.+.+|+++|+||||||++.|+|||||+++||+|..|..|. ..|..++.|||++|+|++...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~---~~C~~~~~y~~~~SsT~~~~~--------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD---IACWLHHKYNSSKSSTYVKNG--------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC---ccccCcCcCCcccCcceeeCC---------------
Confidence 46789999999999999999999999999999999886432 123345799999999998732
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC--
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 228 (484)
+.|.+.|++|+ +.|.+++|+|+|++..++ ++.||++..+.+... .....+||||||++..
T Consensus 64 -------~~~~i~Yg~G~-~~G~~~~D~v~~g~~~~~--------~~~Fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 125 (325)
T cd05490 64 -------TEFAIQYGSGS-LSGYLSQDTVSIGGLQVE--------GQLFGEAVKQPGITF--IAAKFDGILGMAYPRISV 125 (325)
T ss_pred -------cEEEEEECCcE-EEEEEeeeEEEECCEEEc--------CEEEEEEeeccCCcc--cceeeeEEEecCCccccc
Confidence 69999999998 799999999999986543 789999988765322 3356899999998653
Q ss_pred ----cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 229 ----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 229 ----s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
+++++|++||.| +++||+||.+. ..+|+|+|||+|++ ++.|+|+. .+.+|.|++++|+||++....
T Consensus 126 ~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~~- 203 (325)
T cd05490 126 DGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVT-RKAYWQIHMDQVDVGSGLTLC- 203 (325)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcC-cceEEEEEeeEEEECCeeeec-
Confidence 588999999999 69999999863 24699999999975 48899987 567999999999999874321
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEEC
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (484)
.....++|||||+++++|.+++++|.+++++.. .....+.++| .....+|+|+|+| +|+.++|+
T Consensus 204 ------~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~~----~~~~~~~~~C-----~~~~~~P~i~f~f-gg~~~~l~ 267 (325)
T cd05490 204 ------KGGCEAIVDTGTSLITGPVEEVRALQKAIGAVP----LIQGEYMIDC-----EKIPTLPVISFSL-GGKVYPLT 267 (325)
T ss_pred ------CCCCEEEECCCCccccCCHHHHHHHHHHhCCcc----ccCCCEEecc-----cccccCCCEEEEE-CCEEEEEC
Confidence 224679999999999999999999999886431 1112233456 4445689999999 89999999
Q ss_pred CCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 377 PHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 377 p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
|++|+++. +...|+ +|+..+... .+.+.||||++|||++|+|||++++|||||+
T Consensus 268 ~~~y~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 268 GEDYILKVSQRGTTICLSGFMGLDIPP-PAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred hHHeEEeccCCCCCEEeeEEEECCCCC-CCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 99999875 335797 676644322 2346899999999999999999999999995
No 6
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=9.3e-55 Score=430.56 Aligned_cols=302 Identities=26% Similarity=0.443 Sum_probs=249.5
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
|..|+++|+||||||++.|+|||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~-------~~~f~~~~SsT~~~~~--------------- 58 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN-------HTKFNPSQSSTYSTNG--------------- 58 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc-------cCCCCcccCCCceECC---------------
Confidence 4579999999999999999999999999999998863 543 4699999999998744
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC----
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS---- 226 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~---- 226 (484)
|.|++.|++|+ +.|.+++|++++|+..+ +++.|||+....+... .....+||||||++
T Consensus 59 -------~~~~~~Yg~Gs-~~G~~~~D~i~~g~~~i--------~~~~Fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~ 120 (318)
T cd05477 59 -------ETFSLQYGSGS-LTGIFGYDTVTVQGIII--------TNQEFGLSETEPGTNF--VYAQFDGILGLAYPSISA 120 (318)
T ss_pred -------cEEEEEECCcE-EEEEEEeeEEEECCEEE--------cCEEEEEEEecccccc--cccceeeEeecCcccccc
Confidence 79999999998 79999999999988653 3799999998654321 23467999999985
Q ss_pred --CCcHHHHHHhcCCC-CcceeeeecCC--CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 227 --NSSMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 227 --~~s~~~~L~~~g~i-~~~FSl~l~~~--~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
..+++++|+++|.| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|.+++|+|+++.+....
T Consensus 121 ~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~ 199 (318)
T cd05477 121 GGATTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVT-SETYWQIGIQGFQINGQATGWCS 199 (318)
T ss_pred cCCCCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecC-CceEEEEEeeEEEECCEEecccC
Confidence 35799999999999 69999999874 246999999999664 8999997 57899999999999998874322
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.+..++|||||+++++|++++++|++++++.... . .+|.++|.....+|+|+|+| +|+++.|||
T Consensus 200 ------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~----~-----~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~ 263 (318)
T cd05477 200 ------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ----Y-----GQYVVNCNNIQNLPTLTFTI-NGVSFPLPP 263 (318)
T ss_pred ------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc----C-----CCEEEeCCccccCCcEEEEE-CCEEEEECH
Confidence 2456999999999999999999999998665421 1 23444445556789999999 899999999
Q ss_pred CeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 378 ~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
++|+.+. ...|+ +|.+...+...+...||||++|||++|++||++|+|||||++
T Consensus 264 ~~y~~~~-~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 264 SAYILQN-NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred HHeEecC-CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 9999985 45785 887654322234457999999999999999999999999985
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.8e-55 Score=433.73 Aligned_cols=296 Identities=25% Similarity=0.423 Sum_probs=243.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (484)
|+++|+||||||+++|+|||||+++||++..|. .|.. ++.|||++|+|++...
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------------ 55 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK-------HNRFQPSESSTYVSNG------------------ 55 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc-------cceECCCCCcccccCC------------------
Confidence 899999999999999999999999999999886 4654 4689999999998854
Q ss_pred CCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-----
Q 011500 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----- 228 (484)
Q Consensus 154 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----- 228 (484)
+.|.+.|++|+ +.|.+++|+|++++..+. ++.||++..+.+... .....+||||||++..
T Consensus 56 ----~~~~i~Yg~g~-~~G~~~~D~v~ig~~~~~--------~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~s~~~~ 120 (316)
T cd05486 56 ----EAFSIQYGTGS-LTGIIGIDQVTVEGITVQ--------NQQFAESVSEPGSTF--QDSEFDGILGLAYPSLAVDGV 120 (316)
T ss_pred ----cEEEEEeCCcE-EEEEeeecEEEECCEEEc--------CEEEEEeeccCcccc--cccccceEeccCchhhccCCC
Confidence 79999999998 899999999999876433 799999887655322 3456899999998654
Q ss_pred -cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCCcc
Q 011500 229 -SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDV 299 (484)
Q Consensus 229 -s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~ 299 (484)
+++++|++||+| +++||+||.+. ..+|.|+|||+|++ ++.|+|+. ...+|.|++++|+||++.+..+
T Consensus 121 ~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~--- 196 (316)
T cd05486 121 TPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVT-VQGYWQIQLDNIQVGGTVIFCS--- 196 (316)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECC-CceEEEEEeeEEEEecceEecC---
Confidence 479999999999 68999999863 24799999999976 48999997 5789999999999999876422
Q ss_pred cccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCe
Q 011500 300 FGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHE 379 (484)
Q Consensus 300 ~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~ 379 (484)
....++|||||+++++|++++++|.+.+++... ...+.++| .....+|+|+|+| +|+.++|+|++
T Consensus 197 ----~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~-----~~~~~~~C-----~~~~~~p~i~f~f-~g~~~~l~~~~ 261 (316)
T cd05486 197 ----DGCQAIVDTGTSLITGPSGDIKQLQNYIGATAT-----DGEYGVDC-----STLSLMPSVTFTI-NGIPYSLSPQA 261 (316)
T ss_pred ----CCCEEEECCCcchhhcCHHHHHHHHHHhCCccc-----CCcEEEec-----cccccCCCEEEEE-CCEEEEeCHHH
Confidence 246799999999999999999999888754321 12233455 4445799999999 89999999999
Q ss_pred eeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 380 YLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 380 y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
|++.. +...|+ +|+...... ...+.||||++|||++|+|||.+++|||||+
T Consensus 262 y~~~~~~~~~~~C~~~~~~~~~~~-~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 262 YTLEDQSDGGGYCSSGFQGLDIPP-PAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred eEEecccCCCCEEeeEEEECCCCC-CCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 99875 456896 676654321 1245799999999999999999999999996
No 8
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=8.3e-55 Score=431.84 Aligned_cols=303 Identities=28% Similarity=0.527 Sum_probs=247.2
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCC
Q 011500 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCT 153 (484)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~ 153 (484)
++|+++|+||||+|++.|+|||||+++||+|..|..|..+. ++.|||++|+|++.+.|++..|.. ...|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~-----~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~- 70 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM-----EPPYNLNNSITSSILYCDCNKCCY-----CLSC- 70 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC-----CCCcCcccccccccccCCCccccc-----cCcC-
Confidence 58999999999999999999999999999999999997643 368999999999999999999953 1345
Q ss_pred CCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC----c
Q 011500 154 ANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS----S 229 (484)
Q Consensus 154 ~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~----s 229 (484)
.++.|.|.+.|++|+.+.|.+++|+|+|++..... ......++.|||+..+.+.+ ..+..+||||||+... +
T Consensus 71 ~~~~~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 71 LNNKCEYSISYSEGSSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLF---LTQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred CCCcCcEEEEECCCCceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCcc---cccccceEEEccCCcccccCc
Confidence 34669999999999888999999999998765431 00112357899999887665 3456899999999763 2
Q ss_pred HHHHHHhcCCC-C--cceeeeecCCCCcceEEeCCcCCC--------------CceEeeCCCCCCceEEEEeEEEEccEE
Q 011500 230 MISQLASSGGV-R--KMFAHCLDGINGGGIFAIGHVVQP--------------EVNKTPLVPNQPHYSINMTAVQVGLDF 292 (484)
Q Consensus 230 ~~~~L~~~g~i-~--~~FSl~l~~~~~~G~l~~Ggid~~--------------~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (484)
...+|.+++.+ . ++||+||.+ .+|.|+||++|++ ++.|+|+. .+.+|.|.+++|+|+++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTT 223 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--CCeEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccc
Confidence 34456666665 3 899999986 5799999999853 47899997 458999999999999886
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcE
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (484)
.... ......+++||||++++||++++++|.+++ |+|+|.|++|++
T Consensus 224 ~~~~-----~~~~~~aivDSGTs~~~lp~~~~~~l~~~~-----------------------------P~i~~~f~~g~~ 269 (326)
T cd06096 224 SNSG-----NTKGLGMLVDSGSTLSHFPEDLYNKINNFF-----------------------------PTITIIFENNLK 269 (326)
T ss_pred ccee-----cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------CcEEEEEcCCcE
Confidence 1100 123577999999999999999999988775 889999954899
Q ss_pred EEECCCeeeEEcCCe-EEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCC
Q 011500 373 LKVYPHEYLFPFEDL-WCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCS 435 (484)
Q Consensus 373 ~~l~p~~y~~~~~~~-~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~ 435 (484)
++++|++|+++.++. +|+++... .+.||||++|||++|+|||++++|||||+++|.
T Consensus 270 ~~i~p~~y~~~~~~~~c~~~~~~~-------~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 270 IDWKPSSYLYKKESFWCKGGEKSV-------SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEECHHHhccccCCceEEEEEecC-------CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 999999999987444 44555432 357999999999999999999999999999994
No 9
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.3e-54 Score=428.80 Aligned_cols=292 Identities=26% Similarity=0.429 Sum_probs=241.1
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~---~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
++.+..|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~~----------- 66 (317)
T cd06098 5 NYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF-------HSKYKSSKSSTYKKNG----------- 66 (317)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc-------cCcCCcccCCCcccCC-----------
Confidence 577899999999999999999999999999999999885 5654 4699999999998744
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
..+.+.|++|+ +.|.+++|+|++++..++ ++.||++....+... .....+||||||++
T Consensus 67 -----------~~~~i~Yg~G~-~~G~~~~D~v~ig~~~v~--------~~~f~~~~~~~~~~~--~~~~~dGilGLg~~ 124 (317)
T cd06098 67 -----------TSASIQYGTGS-ISGFFSQDSVTVGDLVVK--------NQVFIEATKEPGLTF--LLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CEEEEEcCCce-EEEEEEeeEEEECCEEEC--------CEEEEEEEecCCccc--cccccceecccccc
Confidence 68999999998 799999999999886533 799999987654321 34568999999986
Q ss_pred CC------cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEE
Q 011500 227 NS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDF 292 (484)
Q Consensus 227 ~~------s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (484)
.. +++.+|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|++++|+||++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~-~~~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVT-RKGYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecC-cCcEEEEEeCeEEECCEE
Confidence 53 578899999999 68999999864 247999999999764 7899997 578999999999999988
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcE
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (484)
+.... ....+++||||+++++|+++++++. +.++|+. ...+|+|+|+| +|++
T Consensus 204 ~~~~~------~~~~aivDTGTs~~~lP~~~~~~i~----------------~~~~C~~-----~~~~P~i~f~f-~g~~ 255 (317)
T cd06098 204 TGFCA------GGCAAIADSGTSLLAGPTTIVTQIN----------------SAVDCNS-----LSSMPNVSFTI-GGKT 255 (317)
T ss_pred eeecC------CCcEEEEecCCcceeCCHHHHHhhh----------------ccCCccc-----cccCCcEEEEE-CCEE
Confidence 65432 2467999999999999998776553 2357842 34689999999 8999
Q ss_pred EEECCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 373 LKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 373 ~~l~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
++|+|++|+++. ....|+ +|+..+... ...+.||||++|||++|+|||++|+|||||+
T Consensus 256 ~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~-~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 256 FELTPEQYILKVGEGAAAQCISGFTALDVPP-PRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEEChHHeEEeecCCCCCEEeceEEECCCCC-CCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 999999999875 245896 676544222 2245799999999999999999999999995
No 10
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.2e-54 Score=429.02 Aligned_cols=305 Identities=22% Similarity=0.375 Sum_probs=249.2
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+..|+++|+||||+|+++|+|||||+++||++..|..|.. .|..++.|||++|+|++...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYT---ACVTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcch---hhcccCcCCCCCCeeeeECC--------------
Confidence 5678999999999999999999999999999999988865421 23445799999999999744
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccC-CCCCCCCcccceeeecCCCCC
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKSNS 228 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~~~ 228 (484)
|.|++.|++|+ +.|.+++|+|++++... ++.||++..... .+ .....|||||||++..
T Consensus 66 --------~~~~~~Yg~g~-~~G~~~~D~v~~g~~~~---------~~~fg~~~~~~~~~~---~~~~~dGilGLg~~~~ 124 (326)
T cd05487 66 --------TEFTIHYASGT-VKGFLSQDIVTVGGIPV---------TQMFGEVTALPAIPF---MLAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------EEEEEEeCCce-EEEEEeeeEEEECCEEe---------eEEEEEEEeccCCcc---ceeecceEEecCChhh
Confidence 79999999998 89999999999987542 367999887643 22 2345899999998643
Q ss_pred ------cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEee
Q 011500 229 ------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (484)
Q Consensus 229 ------s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (484)
+++++|++||.| +++||+||.+. ..+|.|+|||+|+++ ++|+|+. ...+|+|++++++|+++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~-~~~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS-KTGFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC-cCceEEEEecEEEECCEEEe
Confidence 689999999999 69999999874 347999999999764 7899986 57899999999999998764
Q ss_pred cCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEE
Q 011500 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLK 374 (484)
Q Consensus 295 ~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~ 374 (484)
.. .+..++|||||+++++|.++++++++++++... ...+.++| +....+|+|+|+| ++.+++
T Consensus 204 ~~-------~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~~C-----~~~~~~P~i~f~f-gg~~~~ 265 (326)
T cd05487 204 CE-------DGCTAVVDTGASFISGPTSSISKLMEALGAKER-----LGDYVVKC-----NEVPTLPDISFHL-GGKEYT 265 (326)
T ss_pred cC-------CCCEEEECCCccchhCcHHHHHHHHHHhCCccc-----CCCEEEec-----cccCCCCCEEEEE-CCEEEE
Confidence 22 245799999999999999999999999865432 11223455 5556689999999 899999
Q ss_pred ECCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 375 VYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 375 l~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
|++++|+++. .+..|+ +|+..+.+.. ..+.||||++|||++|+|||++|+|||||++
T Consensus 266 v~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 266 LSSSDYVLQDSDFSDKLCTVAFHAMDIPPP-TGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred eCHHHhEEeccCCCCCEEEEEEEeCCCCCC-CCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 9999999986 356786 7776543222 2357999999999999999999999999985
No 11
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=7.3e-54 Score=420.64 Aligned_cols=289 Identities=29% Similarity=0.565 Sum_probs=237.6
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
+|+++|+||||||++.|+|||||+++||+|.+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c----------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC----------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC-----------------------------------------------
Confidence 599999999999999999999999999986543
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHHHH
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L 234 (484)
|.|.+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||++..+++.||
T Consensus 34 ---~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~-----~~~~GilGLg~~~~s~~~ql 98 (299)
T cd05472 34 ---CLYQVSYGDGSYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLF-----GGAAGLLGLGRGKLSLPSQT 98 (299)
T ss_pred ---CeeeeEeCCCceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCcc-----CCCCEEEECCCCcchHHHHh
Confidence 3789999999977999999999998751 23479999998876644 25899999999999999998
Q ss_pred HhcCCCCcceeeeecCC--CCcceEEeCCcCC--CCceEeeCCCCC---CceEEEEeEEEEccEEeecCCcccccCCCCc
Q 011500 235 ASSGGVRKMFAHCLDGI--NGGGIFAIGHVVQ--PEVNKTPLVPNQ---PHYSINMTAVQVGLDFLNLPTDVFGVGDNKG 307 (484)
Q Consensus 235 ~~~g~i~~~FSl~l~~~--~~~G~l~~Ggid~--~~~~~~p~~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 307 (484)
..+ .+++||+||.+. ..+|+|+||++|+ .++.|+|++.++ .+|.|++++|+||++.+..+... .....
T Consensus 99 ~~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~---~~~~~ 173 (299)
T cd05472 99 ASS--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPAS---FGAGG 173 (299)
T ss_pred hHh--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccc---cCCCC
Confidence 764 468999999863 4579999999997 579999998543 58999999999999988654321 23567
Q ss_pred EEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCC-ceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEc--
Q 011500 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEY-TCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF-- 384 (484)
Q Consensus 308 aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~-- 384 (484)
+++||||+++++|++++++|.+++.+.............+ .||..++.....+|+|+|+|+++.+++|+|++|+++.
T Consensus 174 ~ivDSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~ 253 (299)
T cd05472 174 VIIDSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD 253 (299)
T ss_pred eEEeCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC
Confidence 9999999999999999999999998765322111112223 4987766555679999999955899999999999843
Q ss_pred CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
.+..|+++.... .+.+.||||+.|||++|+|||++++|||||+++|
T Consensus 254 ~~~~C~~~~~~~----~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 254 SSQVCLAFAGTS----DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred CCCEEEEEeCCC----CCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 567899887653 1245799999999999999999999999999999
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.2e-53 Score=422.60 Aligned_cols=301 Identities=24% Similarity=0.433 Sum_probs=246.4
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.+..|+++|+||||+|++.|+|||||+++||+|..|. .|.. ++.|++++|+|++...
T Consensus 5 n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~-------~~~y~~~~Sst~~~~~------------ 65 (320)
T cd05488 5 NYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL-------HSKYDSSASSTYKANG------------ 65 (320)
T ss_pred ccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC-------cceECCCCCcceeeCC------------
Confidence 567889999999999999999999999999999999986 4654 3699999999998743
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.+.+.|++|+ +.|.+++|++++++.+.. ++.|||+....+... .....|||||||++.
T Consensus 66 ----------~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~--------~~~f~~a~~~~g~~~--~~~~~dGilGLg~~~ 124 (320)
T cd05488 66 ----------TEFKIQYGSGS-LEGFVSQDTLSIGDLTIK--------KQDFAEATSEPGLAF--AFGKFDGILGLAYDT 124 (320)
T ss_pred ----------CEEEEEECCce-EEEEEEEeEEEECCEEEC--------CEEEEEEecCCCcce--eeeeeceEEecCCcc
Confidence 79999999998 899999999999886543 789999987755421 234579999999976
Q ss_pred C------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeec
Q 011500 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (484)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (484)
. +.+.+|++||+| +++||+||.+. ..+|.|+|||+|++ +++|+|++ ...+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVR-RKAYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCC-cCcEEEEEeCeEEECCEEecc
Confidence 4 456789999999 69999999975 46799999999865 58999998 578999999999999987753
Q ss_pred CCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEE
Q 011500 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (484)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (484)
+ +..++|||||+++++|+++++++.+++++... .. .+|.++|.....+|+|+|+| +|+++.|
T Consensus 204 ~--------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~----~~-----~~~~~~C~~~~~~P~i~f~f-~g~~~~i 265 (320)
T cd05488 204 E--------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS----WN-----GQYTVDCSKVDSLPDLTFNF-DGYNFTL 265 (320)
T ss_pred C--------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc----cC-----CcEEeeccccccCCCEEEEE-CCEEEEE
Confidence 2 35699999999999999999999988864431 11 23333445456789999999 8999999
Q ss_pred CCCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 376 YPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 376 ~p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
||++|+++.+ ..|+ .+...+... ...+.||||++|||++|+|||++++|||||+
T Consensus 266 ~~~~y~~~~~-g~C~~~~~~~~~~~-~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 266 GPFDYTLEVS-GSCISAFTGMDFPE-PVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CHHHheecCC-CeEEEEEEECcCCC-CCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 9999998754 4797 555543211 1234799999999999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.4e-53 Score=423.47 Aligned_cols=306 Identities=24% Similarity=0.360 Sum_probs=249.4
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+..|+++|+||||+|++.|++||||+++||+|..|..|.. .|..++.|||++|+|++...
T Consensus 6 n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~c~~~~~y~~~~Sst~~~~~-------------- 68 (329)
T cd05485 6 NYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNI---ACLLHNKYDSTKSSTYKKNG-------------- 68 (329)
T ss_pred eccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCc---cccCCCeECCcCCCCeEECC--------------
Confidence 6788999999999999999999999999999999988864321 23335689999999999854
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (484)
|.|.+.|++|+ +.|.+++|++++++...+ ++.||++..+.+... .....+||||||++..
T Consensus 69 --------~~~~i~Y~~g~-~~G~~~~D~v~ig~~~~~--------~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s 129 (329)
T cd05485 69 --------TEFAIQYGSGS-LSGFLSTDTVSVGGVSVK--------GQTFAEAINEPGLTF--VAAKFDGILGMGYSSIS 129 (329)
T ss_pred --------eEEEEEECCce-EEEEEecCcEEECCEEEC--------CEEEEEEEecCCccc--cccccceEEEcCCcccc
Confidence 79999999998 899999999999886533 799999987655321 3456899999999754
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeec
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (484)
+++.+|++||+| +++||+||.+. ..+|+|+|||+|++ ++.|+|+. .+.+|.|.+++++++++.+.
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~~~~i~v~~~~~~- 207 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVT-RKGYWQFKMDSVSVGEGEFC- 207 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcC-CceEEEEEeeEEEECCeeec-
Confidence 468999999999 69999999864 24699999999865 47899997 57899999999999998653
Q ss_pred CCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEE
Q 011500 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (484)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (484)
..+..++|||||+++++|++++++|.+++++... .. .||.++|.....+|+|+|+| +|+++.|
T Consensus 208 -------~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~----~~-----~~~~~~C~~~~~~p~i~f~f-gg~~~~i 270 (329)
T cd05485 208 -------SGGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI----IG-----GEYMVNCSAIPSLPDITFVL-GGKSFSL 270 (329)
T ss_pred -------CCCcEEEEccCCcceeCCHHHHHHHHHHhCCccc----cC-----CcEEEeccccccCCcEEEEE-CCEEeEE
Confidence 2245699999999999999999999988865321 11 23444445555689999999 8999999
Q ss_pred CCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 376 YPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 376 ~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
+|++|+++. +...|+ +++..+... ...+.||||++|||++|+|||++++|||||+
T Consensus 271 ~~~~yi~~~~~~~~~~C~~~~~~~~~~~-~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 271 TGKDYVLKVTQMGQTICLSGFMGIDIPP-PAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred ChHHeEEEecCCCCCEEeeeEEECcCCC-CCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 999999986 346897 677644322 2245799999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.2e-53 Score=429.72 Aligned_cols=301 Identities=21% Similarity=0.325 Sum_probs=241.1
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+.+|+++|+||||||++.|+|||||+++||+|..|..| .|..++.|||++|+|++...
T Consensus 134 n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~-----~C~~~~~yd~s~SsT~~~~~-------------- 194 (453)
T PTZ00147 134 DLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTE-----GCETKNLYDSSKSKTYEKDG-------------- 194 (453)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcc-----cccCCCccCCccCcceEECC--------------
Confidence 56788999999999999999999999999999999998632 12334699999999998854
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (484)
+.|++.|++|+ +.|.+++|+|++|+.... ..|+++.+..+..........|||||||++..
T Consensus 195 --------~~f~i~Yg~Gs-vsG~~~~DtVtiG~~~v~---------~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 195 --------TKVEMNYVSGT-VSGFFSKDLVTIGNLSVP---------YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred --------CEEEEEeCCCC-EEEEEEEEEEEECCEEEE---------EEEEEEEeccCcccccccccccceecccCCccc
Confidence 68999999997 899999999999886432 46888876644200003446899999999754
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
+++.+|++||.| +++||+||.+. ..+|.|+|||+|++ ++.|+|+. .+.+|.|.++ +.+++...
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~-~~~~W~V~l~-~~vg~~~~---- 330 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN-HDLYWQVDLD-VHFGNVSS---- 330 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC-CCceEEEEEE-EEECCEec----
Confidence 578899999999 68999999864 45799999999976 48899997 6789999998 57776432
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
....+++||||+++++|+++++++++++++.... ....+..+|+ . ..+|+|+|.| +|..++|+|
T Consensus 331 ------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~~---~~~~y~~~C~-----~-~~lP~~~f~f-~g~~~~L~p 394 (453)
T PTZ00147 331 ------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKVP---FLPLYVTTCN-----N-TKLPTLEFRS-PNKVYTLEP 394 (453)
T ss_pred ------CceeEEECCCCchhcCCHHHHHHHHHHhCCeecC---CCCeEEEeCC-----C-CCCCeEEEEE-CCEEEEECH
Confidence 2467999999999999999999999998543211 1112234664 2 4589999999 899999999
Q ss_pred CeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 378 HEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 378 ~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++|+.+. ....|+ +++..+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 395 ~~yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 395 EYYLQPIEDIGSALCMLNIIPIDL----EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred HHheeccccCCCcEEEEEEEECCC----CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9999764 345796 6776531 23579999999999999999999999999986
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.3e-52 Score=425.97 Aligned_cols=299 Identities=20% Similarity=0.361 Sum_probs=239.5
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.+.+|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 133 d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~-------~~~yd~s~SsT~~~~~------------ 193 (450)
T PTZ00013 133 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI-------KNLYDSSKSKSYEKDG------------ 193 (450)
T ss_pred ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc-------CCCccCccCcccccCC------------
Confidence 567889999999999999999999999999999999986 4554 4699999999998854
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
+.+.+.|++|+ +.|.+++|+|++|+.... .+|+++.+..+.........+|||||||++.
T Consensus 194 ----------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~~~~---------~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~ 253 (450)
T PTZ00013 194 ----------TKVDITYGSGT-VKGFFSKDLVTLGHLSMP---------YKFIEVTDTDDLEPIYSSSEFDGILGLGWKD 253 (450)
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECCEEEc---------cEEEEEEeccccccceecccccceecccCCc
Confidence 68999999998 899999999999886432 5788877653210000234689999999975
Q ss_pred C------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeec
Q 011500 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (484)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (484)
. +++.+|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. .+.+|.|.++ +.+|....
T Consensus 254 ~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~-~~~yW~I~l~-v~~G~~~~-- 329 (450)
T PTZ00013 254 LSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQTM-- 329 (450)
T ss_pred cccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC-cCceEEEEEE-EEECceec--
Confidence 4 588999999999 58999999864 457999999999764 8899997 5789999998 66664432
Q ss_pred CCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEE
Q 011500 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (484)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (484)
....+++||||+++++|+++++++++++++.... ....+..+|+ . ..+|+|+|.| +|.+++|
T Consensus 330 --------~~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~~---~~~~y~~~C~-----~-~~lP~i~F~~-~g~~~~L 391 (450)
T PTZ00013 330 --------QKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP---FLPFYVTTCD-----N-KEMPTLEFKS-ANNTYTL 391 (450)
T ss_pred --------cccceEECCCCccccCCHHHHHHHHHHhCCeecC---CCCeEEeecC-----C-CCCCeEEEEE-CCEEEEE
Confidence 1456999999999999999999999988654211 1112334563 2 4689999999 8899999
Q ss_pred CCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 376 YPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 376 ~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+|++|+.+. ++..|+ ++.+... +.+.||||++|||++|+|||++++|||||+++
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDI----DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCC----CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 999999753 456896 7765431 23579999999999999999999999999975
No 16
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.1e-51 Score=415.56 Aligned_cols=315 Identities=24% Similarity=0.341 Sum_probs=240.8
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
.|+++|+||||+|++.|+|||||+++||+|..|..| ++.|||++|+|++...
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~---------~~~f~~~~SsT~~~~~------------------- 54 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI---------HTYFHRELSSTYRDLG------------------- 54 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcCCCccc---------cccCCchhCcCcccCC-------------------
Confidence 599999999999999999999999999999877322 2589999999999865
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC-------
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------- 227 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------- 227 (484)
|.|++.|++|+ +.|.+++|+|+|++.. .+ ...+.|++.....+.+. .....|||||||++.
T Consensus 55 ---~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~--~~----~~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 55 ---KGVTVPYTQGS-WEGELGTDLVSIPKGP--NV----TFRANIAAITESENFFL--NGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---ceEEEEECcce-EEEEEEEEEEEECCCC--cc----ceEEeeEEEecccccee--cccccceeeeecccccccCCCC
Confidence 69999999998 7999999999998631 11 01133555554443321 223579999999864
Q ss_pred -CcHHHHHHhcCCCCcceeeeecCC----------CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEE
Q 011500 228 -SSMISQLASSGGVRKMFAHCLDGI----------NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDF 292 (484)
Q Consensus 228 -~s~~~~L~~~g~i~~~FSl~l~~~----------~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (484)
.+++++|.+|+.++++||+||... ..+|.|+|||+|++ .+.|+|++ ...+|.|.+++|+|+++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~-~~~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIR-EEWYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecC-cceeEEEEEEEEEECCEe
Confidence 368899999999888999988521 24799999999965 48899997 567999999999999998
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc---cCCCCceeccCCCccCCCceEEEEECC
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVTFHFEN 369 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~f~f~g 369 (484)
+..+...+. ...+|+||||+++++|++++++|.++++++........ ....++|+.........+|+|+|+|+|
T Consensus 202 ~~~~~~~~~---~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g 278 (364)
T cd05473 202 LNLDCKEYN---YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRD 278 (364)
T ss_pred ccccccccc---CccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEcc
Confidence 875433221 24699999999999999999999999987653211111 112257875432222358999999954
Q ss_pred C-----cEEEECCCeeeEEc----CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCc
Q 011500 370 S-----VSLKVYPHEYLFPF----EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSI 438 (484)
Q Consensus 370 g-----~~~~l~p~~y~~~~----~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~ 438 (484)
+ ..+.|+|++|+... ....|+.+.... ..+.||||+.|||++|+|||++|+|||||+++|....
T Consensus 279 ~~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~-----~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~ 351 (364)
T cd05473 279 ENSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQ-----STNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHD 351 (364)
T ss_pred CCCCceEEEEECHHHhhhhhccCCCcceeeEEeeec-----CCCceEEeeeeEcceEEEEECCCCEEeeEeccccccc
Confidence 2 47899999999864 246897532211 1356999999999999999999999999999998643
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=3.6e-50 Score=388.70 Aligned_cols=264 Identities=34% Similarity=0.690 Sum_probs=217.9
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCC-CCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCC
Q 011500 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (484)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~-~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (484)
++|+++|+||||||++.|+|||||+++||+|. +|..| .
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------~----------------- 39 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------Q----------------- 39 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC------------------------c-----------------
Confidence 47999999999999999999999999999983 55544 1
Q ss_pred CCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHH
Q 011500 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMIS 232 (484)
Q Consensus 153 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ 232 (484)
|.|++.|+||+.+.|.+++|+|+++..... ..++++.|||+..+.+.+.. .....|||||||++..++++
T Consensus 40 -----c~~~i~Ygd~~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~-~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 40 -----CDYEIEYADGGSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLN-PPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred -----CccEeEeCCCCceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccC-CCccCCEEEECCCCCCCHHH
Confidence 689999998888999999999999754222 13458999999876654321 34568999999999999999
Q ss_pred HHHhcCCCCcceeeeecCCCCcceEEeCCcCC--CCceEeeCCCC--CCceEEEEeEEEEccEEeecCCcccccCCCCcE
Q 011500 233 QLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ--PEVNKTPLVPN--QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGT 308 (484)
Q Consensus 233 ~L~~~g~i~~~FSl~l~~~~~~G~l~~Ggid~--~~~~~~p~~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~a 308 (484)
||+++++|+++||+||.+ ..+|.|+||+... ..+.|+|+..+ ..+|.|++.+|+||++... .....+
T Consensus 110 ql~~~~~i~~~Fs~~l~~-~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~--------~~~~~~ 180 (273)
T cd05475 110 QLASQGIIKNVIGHCLSS-NGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTG--------GKGLEV 180 (273)
T ss_pred HHHhcCCcCceEEEEccC-CCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECc--------CCCceE
Confidence 999999999999999987 5578999996532 35899999854 4789999999999998542 235679
Q ss_pred EEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCC---cEEEECCCeeeEEc-
Q 011500 309 IIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENS---VSLKVYPHEYLFPF- 384 (484)
Q Consensus 309 iiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg---~~~~l~p~~y~~~~- 384 (484)
++||||+++++|+++| +|+|+|+|+++ ++++|||++|++..
T Consensus 181 ivDTGTt~t~lp~~~y-----------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~ 225 (273)
T cd05475 181 VFDSGSSYTYFNAQAY-----------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISE 225 (273)
T ss_pred EEECCCceEEcCCccc-----------------------------------cccEEEEECCCCceeEEEeCCCceEEEcC
Confidence 9999999999999876 48899999433 79999999999875
Q ss_pred CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
++..|+++..... ....+.||||+.|||++|+|||++++|||||+++|
T Consensus 226 ~~~~Cl~~~~~~~--~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 226 KGNVCLGILNGSE--IGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCCEEEEEecCCC--cCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 5668998775431 11235799999999999999999999999999998
No 18
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=6.9e-50 Score=399.52 Aligned_cols=325 Identities=20% Similarity=0.339 Sum_probs=253.0
Q ss_pred eCCCCce-EEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCC---------CCC
Q 011500 82 IGTPPKD-YYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP---------LTD 151 (484)
Q Consensus 82 iGtP~q~-~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~---------~~~ 151 (484)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|...+... ...
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~-------------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~ 62 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA-------------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPG 62 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC-------------------CCcCCCCccCcCChhhccccccCCCccccCCCCCC
Confidence 5788777 999999999999999854 35789999999999998764321 124
Q ss_pred CCCCCCCceeEE-eCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcH
Q 011500 152 CTANTSCPYLEI-YGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSM 230 (484)
Q Consensus 152 c~~~~~~~~~~~-Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~ 230 (484)
|. ++.|.|... |++|+...|++++|+|+|+...........++++.|||+....... ....+|||||||++..|+
T Consensus 63 c~-~~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~---~~~~~dGIlGLg~~~lSl 138 (362)
T cd05489 63 CG-NNTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKG---LPPGAQGVAGLGRSPLSL 138 (362)
T ss_pred CC-CCcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccC---CccccccccccCCCccch
Confidence 53 345888665 7899889999999999997643321111235689999998753211 123489999999999999
Q ss_pred HHHHHhcCCCCcceeeeecCC-CCcceEEeCCcCC----------CCceEeeCCCC---CCceEEEEeEEEEccEEeecC
Q 011500 231 ISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ----------PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 231 ~~~L~~~g~i~~~FSl~l~~~-~~~G~l~~Ggid~----------~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~ 296 (484)
+.||..++..+++||+||.+. ..+|.|+||+.+. ..++|+|++.+ ..+|.|++++|+||++.+.++
T Consensus 139 ~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~ 218 (362)
T cd05489 139 PAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLN 218 (362)
T ss_pred HHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCC
Confidence 999988766678999999864 3579999999874 45899999865 368999999999999999876
Q ss_pred Ccccc--cCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCccccc--CCCCceeccCC----CccCCCceEEEEEC
Q 011500 297 TDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV--HDEYTCFQYSE----SVDEGFPNVTFHFE 368 (484)
Q Consensus 297 ~~~~~--~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~--~~~~~C~~~~~----~~~~~~p~i~f~f~ 368 (484)
+..+. ..+..++||||||++++||+++|++|.+++.+.......... .....||.... .....+|+|+|+|+
T Consensus 219 ~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~ 298 (362)
T cd05489 219 PTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLD 298 (362)
T ss_pred chhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEe
Confidence 65443 234568999999999999999999999999877543221111 11248987532 22457999999996
Q ss_pred C-CcEEEECCCeeeEEc-CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 369 N-SVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 369 g-g~~~~l~p~~y~~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
| |++++|+|++|+++. ++..|++|...+.. ..+.||||+.|||++|++||++++|||||++
T Consensus 299 g~g~~~~l~~~ny~~~~~~~~~Cl~f~~~~~~---~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 299 GGGVNWTIFGANSMVQVKGGVACLAFVDGGSE---PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred CCCeEEEEcCCceEEEcCCCcEEEEEeeCCCC---CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 5 699999999999987 56789999876521 1357999999999999999999999999974
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.8e-50 Score=385.91 Aligned_cols=253 Identities=38% Similarity=0.728 Sum_probs=219.4
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
+|+++|+||||||++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999974
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHHHH
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQL 234 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L 234 (484)
|.|.+.|+||+.+.|.+++|+++|++.. ..++++.|||+.+..+ + .....+||||||++..|++.||
T Consensus 31 ---~~~~~~Y~dg~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~---~~~~~~GIlGLg~~~~s~~~ql 97 (265)
T cd05476 31 ---CSYEYSYGDGSSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G---SFGGADGILGLGRGPLSLVSQL 97 (265)
T ss_pred ---CceEeEeCCCceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C---ccCCCCEEEECCCCcccHHHHh
Confidence 2688999999889999999999998862 1234799999998876 3 4567899999999999999999
Q ss_pred HhcCCCCcceeeeecCC---CCcceEEeCCcCC---CCceEeeCCCC---CCceEEEEeEEEEccEEeecCCcccc--cC
Q 011500 235 ASSGGVRKMFAHCLDGI---NGGGIFAIGHVVQ---PEVNKTPLVPN---QPHYSINMTAVQVGLDFLNLPTDVFG--VG 303 (484)
Q Consensus 235 ~~~g~i~~~FSl~l~~~---~~~G~l~~Ggid~---~~~~~~p~~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~--~~ 303 (484)
..++ ++||+||.+. ..+|+|+||++|+ ..+.|+|++.+ ..+|.|++++|+|+++.+.++...+. ..
T Consensus 98 ~~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~ 174 (265)
T cd05476 98 GSTG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSD 174 (265)
T ss_pred hccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccC
Confidence 9887 8999999873 4689999999997 57999999865 57899999999999998876543322 23
Q ss_pred CCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEE
Q 011500 304 DNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFP 383 (484)
Q Consensus 304 ~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~ 383 (484)
....+++||||+++++|++++ |+|+|+|+++.++.+++++|+++
T Consensus 175 ~~~~ai~DTGTs~~~lp~~~~------------------------------------P~i~~~f~~~~~~~i~~~~y~~~ 218 (265)
T cd05476 175 GSGGTIIDSGTTLTYLPDPAY------------------------------------PDLTLHFDGGADLELPPENYFVD 218 (265)
T ss_pred CCCcEEEeCCCcceEcCcccc------------------------------------CCEEEEECCCCEEEeCcccEEEE
Confidence 467899999999999999987 78999994489999999999997
Q ss_pred c-CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 384 F-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 384 ~-~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
. .+..|+++.... ..+.||||++|||++|++||.+++|||||+++|
T Consensus 219 ~~~~~~C~~~~~~~-----~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 219 VGEGVVCLAILSSS-----SGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCCCCEEEEEecCC-----CCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 6 667999887653 256899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=6.9e-50 Score=388.22 Aligned_cols=265 Identities=26% Similarity=0.433 Sum_probs=218.5
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (484)
|+++|+||||||++.|+|||||+++||++..|..|..+. ++.||+++|+|++..+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~-----~~~y~~~~Sst~~~~~-------------------- 55 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG-----HKLYDPSKSSTAKLLP-------------------- 55 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc-----CCcCCCccCccceecC--------------------
Confidence 899999999999999999999999999999998886432 3679999999998743
Q ss_pred CCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-------
Q 011500 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------- 228 (484)
Q Consensus 156 ~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------- 228 (484)
.+.|.+.|++|+.+.|.+++|+|+|++..++ ++.||+++..++.+. .....+||||||++..
T Consensus 56 -~~~~~i~Y~~G~~~~G~~~~D~v~ig~~~~~--------~~~fg~~~~~~~~~~--~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 56 -GATWSISYGDGSSASGIVYTDTVSIGGVEVP--------NQAIELATAVSASFF--SDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CcEEEEEeCCCCeEEEEEEEEEEEECCEEEC--------CeEEEEEeecCcccc--ccccccceeeeccccccccccCC
Confidence 3689999999987899999999999886533 789999998765332 3457999999998643
Q ss_pred --cHHHHHHhcCCCCcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCCccccc
Q 011500 229 --SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGV 302 (484)
Q Consensus 229 --s~~~~L~~~g~i~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~ 302 (484)
+++++|.+++. +++||+||.+ ...|+|+|||+|++ +++|+|++....+|.|++++|+||++... .
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~-~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-------~ 195 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRK-AAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-------S 195 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecC-CCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-------e
Confidence 57889998865 8999999987 56899999999965 58999998557899999999999988432 1
Q ss_pred CCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeE
Q 011500 303 GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLF 382 (484)
Q Consensus 303 ~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~ 382 (484)
.....++|||||+++++|.++++++.+++.+... ... ..+|.++|+.. +|+|+|+|
T Consensus 196 ~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~--~~~-----~~~~~~~C~~~--~P~i~f~~--------------- 251 (278)
T cd06097 196 RSGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY--DSE-----YGGWVFPCDTT--LPDLSFAV--------------- 251 (278)
T ss_pred cCCceEEeecCCchhcCCHHHHHHHHHhCcCCcc--cCC-----CCEEEEECCCC--CCCEEEEE---------------
Confidence 2356799999999999999999999998843221 011 12344444432 89999998
Q ss_pred EcCCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 383 PFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 383 ~~~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
.||||++|||++|+|||++|+|||||+
T Consensus 252 ----------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 ----------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred ----------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 499999999999999999999999995
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.4e-49 Score=392.16 Aligned_cols=300 Identities=27% Similarity=0.514 Sum_probs=246.8
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
.|+++|+||||+|+++|++||||+++||++..|..|. .|...+.|++.+|+|++...
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~----~~~~~~~y~~~~S~t~~~~~------------------- 57 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS----SCASSGFYNPSKSSTFSNQG------------------- 57 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT----HHCTSC-BBGGGSTTEEEEE-------------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc----ccccccccccccccccccce-------------------
Confidence 4999999999999999999999999999999998761 12234699999999999865
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC-------C
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS-------N 227 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~-------~ 227 (484)
+.+.+.|++|+ ++|.+++|+++|++.... ++.||++....+... .....+||||||++ .
T Consensus 58 ---~~~~~~y~~g~-~~G~~~~D~v~ig~~~~~--------~~~f~~~~~~~~~~~--~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 58 ---KPFSISYGDGS-VSGNLVSDTVSIGGLTIP--------NQTFGLADSYSGDPF--SPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEETTEE-EEEEEEEEEEEETTEEEE--------EEEEEEEEEEESHHH--HHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeccCcc-cccccccceEeeeecccc--------ccceecccccccccc--ccccccccccccCCcccccccC
Confidence 68999999999 999999999999886543 789999998654311 24568999999974 3
Q ss_pred CcHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecCCcccc
Q 011500 228 SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFG 301 (484)
Q Consensus 228 ~s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ 301 (484)
.+++++|+++|+| +++||++|.+. ...|.|+|||+|+++ +.|+|+. ...+|.+.+++|.++++....
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~-~~~~w~v~~~~i~i~~~~~~~------ 196 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV-SSGYWSVPLDSISIGGESVFS------ 196 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS-STTTTEEEEEEEEETTEEEEE------
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc-ccccccccccccccccccccc------
Confidence 5899999999999 69999999985 256999999999764 7899998 788999999999999993221
Q ss_pred cCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeee
Q 011500 302 VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYL 381 (484)
Q Consensus 302 ~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~ 381 (484)
.....++||||++++++|.+++++|++++++.... .++.++|+....+|.|+|.| ++.+++|||++|+
T Consensus 197 -~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~ 264 (317)
T PF00026_consen 197 -SSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYI 264 (317)
T ss_dssp -EEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHE
T ss_pred -ccceeeecccccccccccchhhHHHHhhhcccccc----------eeEEEecccccccceEEEee-CCEEEEecchHhc
Confidence 12345999999999999999999999999776532 34455556666789999999 8999999999999
Q ss_pred EEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 382 FPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 382 ~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
.+. ....|. +|...+. ......+|||.+|||++|++||++++|||||++
T Consensus 265 ~~~~~~~~~~C~~~i~~~~~--~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 265 FKIEDGNGGYCYLGIQPMDS--SDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEESSTTSSEEEESEEEESS--TTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccccccceeEeeeecccc--cccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 987 233785 6766332 223578999999999999999999999999985
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=9.8e-48 Score=376.83 Aligned_cols=266 Identities=26% Similarity=0.457 Sum_probs=223.3
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
+|+++|+||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 69999999999999999999999999996
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC------
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------ 228 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------ 228 (484)
.|++.|++|+.+.|.+++|+|++++..++ ++.|||+++.. ..+||||||++..
T Consensus 31 ----~~~~~Y~~g~~~~G~~~~D~v~~g~~~~~--------~~~fg~~~~~~---------~~~GilGLg~~~~~~~~~~ 89 (295)
T cd05474 31 ----DFSISYGDGTSASGTWGTDTVSIGGATVK--------NLQFAVANSTS---------SDVGVLGIGLPGNEATYGT 89 (295)
T ss_pred ----eeEEEeccCCcEEEEEEEEEEEECCeEec--------ceEEEEEecCC---------CCcceeeECCCCCcccccC
Confidence 36888999877999999999999886433 79999998742 3689999999775
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCC-----CceEEEEeEEEEccEE
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQ-----PHYSINMTAVQVGLDF 292 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~-----~~w~v~l~~i~v~~~~ 292 (484)
+++++|+++|+| +++||+||.+. ...|.|+|||+|+++ ++|+|+.... .+|.|.+++|+++++.
T Consensus 90 ~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~ 169 (295)
T cd05474 90 GYTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSS 169 (295)
T ss_pred CCcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCC
Confidence 799999999999 69999999975 457999999999764 7899998553 6799999999999988
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcE
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (484)
+..+. ......++|||||+++++|.+++++|++++.+..... ...+..+|+ .... |+|+|+| +|.+
T Consensus 170 ~~~~~----~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~~~~C~-----~~~~-p~i~f~f-~g~~ 235 (295)
T cd05474 170 GNTTL----LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLYVVDCD-----AKDD-GSLTFNF-GGAT 235 (295)
T ss_pred Ccccc----cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEEEEeCC-----CCCC-CEEEEEE-CCeE
Confidence 65321 2345789999999999999999999999997765321 223345664 3334 9999999 8899
Q ss_pred EEECCCeeeEEcC-----CeEE-EEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 373 LKVYPHEYLFPFE-----DLWC-IGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 373 ~~l~p~~y~~~~~-----~~~C-~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
++||+++|+++.. +..| ++|.... .+.||||++|||++|++||.+++|||||++
T Consensus 236 ~~i~~~~~~~~~~~~~~~~~~C~~~i~~~~------~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 236 ISVPLSDLVLPASTDDGGDGACYLGIQPST------SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEHHHhEeccccCCCCCCCeEEEEEeCC------CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 9999999998762 6678 5887754 267999999999999999999999999985
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=6e-45 Score=354.73 Aligned_cols=268 Identities=32% Similarity=0.598 Sum_probs=224.4
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (484)
|+++|.||||+|++.|++||||+++||+|..|..|..+.. ....|++..|+++...
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~---~~~~~~~~~s~~~~~~--------------------- 56 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH---PRFKYDSSKSSTYKDT--------------------- 56 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC---CCCccCccCCceeecC---------------------
Confidence 7899999999999999999999999999999987765431 0112677777776653
Q ss_pred CCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC------Cc
Q 011500 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN------SS 229 (484)
Q Consensus 156 ~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~------~s 229 (484)
.|.+.+.|++|+ +.|.+++|+++|++.. ++++.|||+......+ .....+||||||+.. .+
T Consensus 57 -~~~~~~~Y~~g~-~~g~~~~D~v~~~~~~--------~~~~~fg~~~~~~~~~---~~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 57 -GCTFSITYGDGS-VTGGLGTDTVTIGGLT--------IPNQTFGCATSESGDF---SSSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCEEEEEECCCe-EEEEEEEeEEEECCEE--------EeceEEEEEeccCCcc---cccccceEeecCCcccccccCCC
Confidence 479999999987 8999999999998865 3379999999887633 456789999999988 79
Q ss_pred HHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCC----CceEeeCCCC-CCceEEEEeEEEEccEEeecCCccc
Q 011500 230 MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQP----EVNKTPLVPN-QPHYSINMTAVQVGLDFLNLPTDVF 300 (484)
Q Consensus 230 ~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~----~~~~~p~~~~-~~~w~v~l~~i~v~~~~~~~~~~~~ 300 (484)
++++|.++++| +++||+||.+. ...|.|+|||+|++ ++.|+|++.. ..+|.|.+++|.|+++...
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~------ 197 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVI------ 197 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceee------
Confidence 99999999999 69999999984 47899999999974 5899999865 7799999999999997511
Q ss_pred ccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCee
Q 011500 301 GVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEY 380 (484)
Q Consensus 301 ~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y 380 (484)
.......++|||||+++++|.+++++|++++.+.... ...|+..+|.....+|+|+|+|
T Consensus 198 ~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~p~i~f~f------------- 256 (283)
T cd05471 198 SSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS--------SDGGYGVDCSPCDTLPDITFTF------------- 256 (283)
T ss_pred ecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc--------cCCcEEEeCcccCcCCCEEEEE-------------
Confidence 1234577999999999999999999999999877642 2244555556667899999999
Q ss_pred eEEcCCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 381 LFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 381 ~~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
.+|||++|||++|++||++++|||||+
T Consensus 257 ------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 489999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.96 E-value=5.3e-29 Score=221.28 Aligned_cols=162 Identities=38% Similarity=0.716 Sum_probs=130.9
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCCC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTAN 155 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~ 155 (484)
|+++|.||||+|++.|++||||+.+|++|. .+.|+|.+|+||+.++|+++.|...++.....|..+
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~--------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~ 66 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP--------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSN 66 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCES
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC--------------CcccCCccCCcccccCCCCcchhhcccccccCCCCc
Confidence 899999999999999999999999999981 269999999999999999999998765423344557
Q ss_pred CCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCCcHHHHHH
Q 011500 156 TSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNSSMISQLA 235 (484)
Q Consensus 156 ~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~s~~~~L~ 235 (484)
+.|.|.+.|++++.+.|.+++|+|+++....+. ....++.|||+....+.+. ..+||||||+.+.||+.||.
T Consensus 67 ~~C~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~-----~~~GilGLg~~~~Sl~sQl~ 138 (164)
T PF14543_consen 67 NSCPYSQSYGDGSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY-----GADGILGLGRGPLSLPSQLA 138 (164)
T ss_dssp SEEEEEEEETTTEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST-----TEEEEEE-SSSTTSHHHHHH
T ss_pred CcccceeecCCCccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc-----CCCcccccCCCcccHHHHHH
Confidence 789999999999999999999999998865332 2345899999999886552 69999999999999999998
Q ss_pred hcCCCCcceeeeecC--CCCcceEEeCC
Q 011500 236 SSGGVRKMFAHCLDG--INGGGIFAIGH 261 (484)
Q Consensus 236 ~~g~i~~~FSl~l~~--~~~~G~l~~Gg 261 (484)
++ ..++||+||.+ ....|.|+||+
T Consensus 139 ~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 139 SS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred Hh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 87 66899999998 36789999995
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.90 E-value=2.6e-23 Score=184.66 Aligned_cols=151 Identities=32% Similarity=0.586 Sum_probs=117.3
Q ss_pred ceEEEEeEEEEccEEeecCCccccc-CCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCc----ccccCCCCceecc
Q 011500 278 HYSINMTAVQVGLDFLNLPTDVFGV-GDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK----VHTVHDEYTCFQY 352 (484)
Q Consensus 278 ~w~v~l~~i~v~~~~~~~~~~~~~~-~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~----~~~~~~~~~C~~~ 352 (484)
+|.|++.+|+||++.+.++...|.. ++..+++|||||++++||+++|+++.+++.+...... .........||..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999999999887642 3468899999999999999999999999987654332 1223445689998
Q ss_pred CC----CccCCCceEEEEECCCcEEEECCCeeeEEc-CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEE
Q 011500 353 SE----SVDEGFPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVI 427 (484)
Q Consensus 353 ~~----~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rI 427 (484)
+. .....+|+|+|+|++|+.++|+|++|++.. ++..|++|.... .++.+..|||..+|++++++||++++||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~---~~~~~~~viG~~~~~~~~v~fDl~~~~i 157 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSD---ADDDGVSVIGNFQQQNYHVVFDLENGRI 157 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEET---STTSSSEEE-HHHCCTEEEEEETTTTEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccC---CCCCCcEEECHHHhcCcEEEEECCCCEE
Confidence 87 345679999999988999999999999988 778999998871 1235789999999999999999999999
Q ss_pred EEEe
Q 011500 428 GWTE 431 (484)
Q Consensus 428 GfA~ 431 (484)
||+|
T Consensus 158 gF~~ 161 (161)
T PF14541_consen 158 GFAP 161 (161)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 9986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=2.8e-22 Score=166.22 Aligned_cols=108 Identities=34% Similarity=0.592 Sum_probs=90.9
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCcc-CCCCCCccceecCCCcccCCCCCCCCCCCCCCC
Q 011500 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLY-DIKDSSTGKFVTCDQEFCHGVYGGPLTDCTANT 156 (484)
Q Consensus 78 ~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f-~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~~~ 156 (484)
++|.||||||++.|+|||||+++||+|..|..|..+. ++.| +|..|++++...
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~-----~~~~~~~~~sst~~~~~--------------------- 54 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS-----HSSYDDPSASSTYSDNG--------------------- 54 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc-----ccccCCcCCCCCCCCCC---------------------
Confidence 4799999999999999999999999999998775432 2456 999999988754
Q ss_pred CCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeec
Q 011500 157 SCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGF 223 (484)
Q Consensus 157 ~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGL 223 (484)
|.|.+.|++|+ +.|.+++|+|+|++... +++.|||+....+.+. .....+|||||
T Consensus 55 -~~~~~~Y~~g~-~~g~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~~--~~~~~~GilGL 109 (109)
T cd05470 55 -CTFSITYGTGS-LSGGLSTDTVSIGDIEV--------VGQAFGCATDEPGATF--LPALFDGILGL 109 (109)
T ss_pred -cEEEEEeCCCe-EEEEEEEEEEEECCEEE--------CCEEEEEEEecCCccc--cccccccccCC
Confidence 79999999997 78999999999988643 3799999999877643 34578999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.85 E-value=4.1e-05 Score=61.07 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=62.4
Q ss_pred cEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCCCC
Q 011500 75 LYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDCTA 154 (484)
Q Consensus 75 ~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c~~ 154 (484)
.|++++.|+ ++++.+++|||++.+|+.......+. . ...
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~----------~-------~~~---------------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG----------L-------PLT---------------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC----------C-------Ccc----------------------
Confidence 589999999 69999999999999999763211111 0 000
Q ss_pred CCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCC
Q 011500 155 NTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (484)
Q Consensus 155 ~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 225 (484)
......+..++|.........+.+++|+.... ++.+........ ..+||||+.+
T Consensus 41 -~~~~~~~~~~~G~~~~~~~~~~~i~ig~~~~~--------~~~~~v~d~~~~--------~~~gIlG~d~ 94 (96)
T cd05483 41 -LGGKVTVQTANGRVRAARVRLDSLQIGGITLR--------NVPAVVLPGDAL--------GVDGLLGMDF 94 (96)
T ss_pred -CCCcEEEEecCCCccceEEEcceEEECCcEEe--------ccEEEEeCCccc--------CCceEeChHH
Confidence 11356677788876666677899999886433 455555443221 3799999853
No 28
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=96.46 E-value=0.015 Score=48.90 Aligned_cols=104 Identities=12% Similarity=0.074 Sum_probs=57.3
Q ss_pred EEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEE
Q 011500 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTF 365 (484)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f 365 (484)
+.|||..+. +++|||++.+.++.+..+++--.............+.+...+ ........+
T Consensus 21 ~~Ing~~~~-------------~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~-------~g~~~~~~l 80 (124)
T cd05479 21 VEINGVPVK-------------AFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKI-------LGRIHLAQV 80 (124)
T ss_pred EEECCEEEE-------------EEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEE-------EeEEEEEEE
Confidence 456777654 899999999999999776633111000000000000010111 011234555
Q ss_pred EECCCcEEEECCCeeeEEcCCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEE
Q 011500 366 HFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGW 429 (484)
Q Consensus 366 ~f~gg~~~~l~p~~y~~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGf 429 (484)
.+ ++..+.+ +++ +.+.. ....|||..||+.+-.+.|+.+++|-|
T Consensus 81 ~i-~~~~~~~---~~~----------Vl~~~------~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 81 KI-GNLFLPC---SFT----------VLEDD------DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred EE-CCEEeee---EEE----------EECCC------CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 55 5544321 111 11111 234799999999999999999998853
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.24 E-value=0.017 Score=48.34 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=27.8
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
.+|.|++++.|. ++++.+++|||++.+.++.
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 578999999997 6899999999999998865
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=95.63 E-value=0.058 Score=46.04 Aligned_cols=97 Identities=18% Similarity=0.277 Sum_probs=54.9
Q ss_pred EEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEcCCe
Q 011500 308 TIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFEDL 387 (484)
Q Consensus 308 aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~~~~ 387 (484)
++||||++-.++......++--.+.................| ....+.+.+.+ +|..+.. +++
T Consensus 35 vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~~V~~~g~~~~~-------~~~~~~~~~~i-~g~~~~~---dl~------ 97 (135)
T PF08284_consen 35 VLIDSGATHSFISSSFAKKLGLPLEPLPRPIVVSAPGGSINC-------EGVCPDVPLSI-QGHEFVV---DLL------ 97 (135)
T ss_pred EEEecCCCcEEccHHHHHhcCCEEEEccCeeEEecccccccc-------cceeeeEEEEE-CCeEEEe---eeE------
Confidence 899999999999888655432111110000001110111112 12245566666 5544432 111
Q ss_pred EEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 388 WCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 388 ~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
.+. .. .-..|||.++|+.+..+-|..+++|-|-.
T Consensus 98 -vl~---l~------~~DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 98 -VLD---LG------GYDVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred -Eec---cc------ceeeEeccchHHhCCCEEEccCCEEEEeC
Confidence 111 11 23489999999999999999999999864
No 31
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.32 E-value=0.11 Score=40.43 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.1
Q ss_pred EEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011500 78 AKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 78 ~~i~iGtP~q~~~l~~DTGSs~~wv~~~ 105 (484)
+++.|+ ++++.+++|||++.+.+...
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH
Confidence 357777 58999999999998888643
No 32
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.75 E-value=0.24 Score=41.53 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=28.1
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
....+++++.|+ ++++.+++|||++..++...-
T Consensus 13 ~~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~ 45 (124)
T cd05479 13 KVPMLYINVEIN--GVPVKAFVDSGAQMTIMSKAC 45 (124)
T ss_pred eeeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHH
Confidence 456799999999 689999999999999986543
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.85 E-value=0.36 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.196 Sum_probs=25.3
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
|++++.|+ ++++.+++||||+..++....
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~ 29 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKT 29 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHH
Confidence 57899999 699999999999999997543
No 34
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=92.41 E-value=0.42 Score=39.93 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=27.2
Q ss_pred CCceEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
.++|.++ +.|||+.+. +++|||++.+.++.++.+++
T Consensus 9 ~g~~~v~---~~InG~~~~-------------flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNVR-------------FLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 3455443 567888654 89999999999999977654
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.15 E-value=1.5 Score=34.04 Aligned_cols=26 Identities=19% Similarity=0.097 Sum_probs=21.1
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 79 KIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 79 ~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
.+.|. ++++.+++|||++.+-+....
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~ 27 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDL 27 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHH
Confidence 35565 699999999999999997643
No 36
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=89.02 E-value=2.4 Score=34.43 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.9
Q ss_pred CeeeechhhhceeEEEEeCCCCEE
Q 011500 404 NMTLLGDLVLSNKLVLYDLENQVI 427 (484)
Q Consensus 404 ~~~iLG~~flr~~y~vfD~~~~rI 427 (484)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 367999999999999999988753
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=87.19 E-value=0.99 Score=33.75 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=29.9
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK 108 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~ 108 (484)
..+.+++.+.|| ++.+..++|||++...|+...+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 567899999999 59999999999999988765443
No 38
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=85.20 E-value=3.6 Score=35.81 Aligned_cols=84 Identities=14% Similarity=0.248 Sum_probs=48.2
Q ss_pred cEEEccccceeecChhhHHHHHHHHHhhCCCCcccc--cCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEc
Q 011500 307 GTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT--VHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF 384 (484)
Q Consensus 307 ~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~ 384 (484)
.++||||++..+.-.++.++|-=.....-. ..... ......| ...-.|.|.. ++..++++ .|+...
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~L~~~~app-~~fRG~vs~~~~~t--------sEAv~ld~~i-~n~~i~i~--aYV~d~ 114 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLELPTHDAPP-FRFRGFVSGESATT--------SEAVTLDFYI-DNKLIDIA--AYVTDN 114 (177)
T ss_pred EEEEeCCCccceeehhhHHhhCCccccCCC-EEEeeeccCCceEE--------EEeEEEEEEE-CCeEEEEE--EEEecc
Confidence 489999999999998877665433322111 11100 0111223 2345677777 66666653 344321
Q ss_pred CCeEEEEEeccCcccCCCCCeeeechhhhceeEEE
Q 011500 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVL 419 (484)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~v 419 (484)
+ ....|+|.|+||.|=.+
T Consensus 115 --------m---------~~dlIIGnPiL~ryp~l 132 (177)
T PF12384_consen 115 --------M---------DHDLIIGNPILDRYPTL 132 (177)
T ss_pred --------C---------CcceEeccHHHhhhHHH
Confidence 0 24589999999987544
No 39
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.13 E-value=1.2 Score=34.25 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
++|||+.+. +++|||++.+.++++.++++
T Consensus 3 v~vng~~~~-------------~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPVR-------------FLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEEE-------------EEEcCCCCcEEECHHHHHHc
Confidence 567887654 89999999999999877665
No 40
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.50 E-value=2.5 Score=31.51 Aligned_cols=29 Identities=24% Similarity=0.468 Sum_probs=24.7
Q ss_pred EEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
+.|+++.+. +++|||++-.+++.+.++++
T Consensus 13 ~~I~g~~~~-------------alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-------------ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-------------EEEeCCCcceecCHHHHHHh
Confidence 567887764 89999999999999987776
No 41
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.32 E-value=2.5 Score=33.07 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=26.1
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHH
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLV 328 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~ 328 (484)
.+.|||+.+. ..+|||++.+.++.+.+.++-
T Consensus 4 ~~~Ing~~i~-------------~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-------------FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-------------EEEcCCcceEEeCHHHHHHhC
Confidence 4678888775 899999999999999877653
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=79.67 E-value=2.7 Score=33.34 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 77 ~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
+.+|.|. ++++.+++||||+.+-++...
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESSGG
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecccc
Confidence 5678888 589999999999999987643
No 43
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=77.74 E-value=4.1 Score=31.69 Aligned_cols=30 Identities=20% Similarity=0.330 Sum_probs=24.1
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
.+.||++.+. +++|||++.+.++.+..+++
T Consensus 6 ~v~i~~~~~~-------------~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPVR-------------FLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEEE-------------EEEECCCCcEEcCHHHHHHc
Confidence 4667777664 89999999999999876654
No 44
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=77.16 E-value=8.4 Score=34.89 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
..+|.|.++..|- +|+++.++|||-+.+.++...... -.||.+..
T Consensus 101 ~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~R-----------lGid~~~l---------------------- 145 (215)
T COG3577 101 SRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDARR-----------LGIDLNSL---------------------- 145 (215)
T ss_pred cCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHHH-----------hCCCcccc----------------------
Confidence 4789999999998 799999999999999887644211 13443221
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCC
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGD 187 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~ 187 (484)
..++.+.-..|......+-.|.+.||+...+
T Consensus 146 ------~y~~~v~TANG~~~AA~V~Ld~v~IG~I~~~ 176 (215)
T COG3577 146 ------DYTITVSTANGRARAAPVTLDRVQIGGIRVK 176 (215)
T ss_pred ------CCceEEEccCCccccceEEeeeEEEccEEEc
Confidence 1356666778886566788999999986544
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=76.69 E-value=3.4 Score=31.99 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred EEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
+.|||+.+. .++|||.+.+.++.+..+.+
T Consensus 3 v~InG~~~~-------------fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-------------FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-------------EEEECCCCeEEECHHHhhhc
Confidence 678888765 89999999999999988775
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=76.37 E-value=3.3 Score=37.58 Aligned_cols=96 Identities=16% Similarity=0.182 Sum_probs=52.3
Q ss_pred CcEEEccccceeecChhhH-HHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEc
Q 011500 306 KGTIIDSGTTLAYLPEMVY-EPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPF 384 (484)
Q Consensus 306 ~~aiiDTGtt~~~lp~~~~-~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~ 384 (484)
..+++|||.+.-.....+. ++.++...... ......+... ......+++.+.+ ++..|.+|- ++..
T Consensus 21 ~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i---~v~~an~~~~------~i~~~~~~~~i~I-~~~~F~IP~---iYq~ 87 (201)
T PF02160_consen 21 YHCYVDTGATICCASKKIIPEEYWEKSKKPI---KVKGANGSII------QINKKAKNGKIQI-ADKIFRIPT---IYQQ 87 (201)
T ss_pred EEEEEeCCCceEEecCCcCCHHHHHhCCCcE---EEEEecCCce------EEEEEecCceEEE-ccEEEeccE---EEEe
Confidence 4489999999988766654 23333322111 0110010000 0112346677777 666666642 2111
Q ss_pred CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEe
Q 011500 385 EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTE 431 (484)
Q Consensus 385 ~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~ 431 (484)
+ + +-..|||.+|+|.|+=....+ .+|-|-.
T Consensus 88 ~---------~-------g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 88 E---------S-------GIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred c---------C-------CCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 1 1 245899999999887666664 4677765
No 47
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=74.28 E-value=27 Score=27.23 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.0
Q ss_pred CCCcEEEccccceeecChhhHH
Q 011500 304 DNKGTIIDSGTTLAYLPEMVYE 325 (484)
Q Consensus 304 ~~~~aiiDTGtt~~~lp~~~~~ 325 (484)
.+...++|||+....+|....+
T Consensus 8 s~~~fLVDTGA~vSviP~~~~~ 29 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASSTK 29 (89)
T ss_pred CCcEEEEeCCCceEeecccccc
Confidence 3566899999999999987543
No 48
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=70.89 E-value=5.4 Score=31.06 Aligned_cols=25 Identities=24% Similarity=0.225 Sum_probs=21.2
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeCC
Q 011500 79 KIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 79 ~i~iGtP~q~~~l~~DTGSs~~wv~~~ 105 (484)
.+.|+ +|.+++++|||++++.+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 46677 69999999999999999753
No 49
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=70.39 E-value=13 Score=36.99 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCC----ceE-EEEEEcCCCceeEeCC
Q 011500 75 LYYAKIGIGTPP----KDY-YVQVDTGSDIMWVNCI 105 (484)
Q Consensus 75 ~Y~~~i~iGtP~----q~~-~l~~DTGSs~~wv~~~ 105 (484)
.=++.|+|=-|+ |.+ +++|||||.-|=+..+
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~s 58 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFAS 58 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHh
Confidence 345667775554 566 8999999998877653
No 50
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=64.93 E-value=7.3 Score=30.81 Aligned_cols=27 Identities=15% Similarity=0.418 Sum_probs=22.1
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhH
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVY 324 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~ 324 (484)
.|.++|+.+. +++|||+..+.++...+
T Consensus 9 ~v~i~g~~i~-------------~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-------------ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-------------EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-------------EEEecCCCcceeccccc
Confidence 4677888765 99999999999998743
No 51
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=58.79 E-value=11 Score=31.48 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=23.7
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL 327 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l 327 (484)
.+++||+.+. |++|||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-------------A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-------------AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-------------EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-------------EEEeCCCCccccCHHHHHHc
Confidence 4678999875 99999999999999987774
No 52
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=55.44 E-value=14 Score=29.05 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.0
Q ss_pred cEEEccccceeecChhhHHHHH
Q 011500 307 GTIIDSGTTLAYLPEMVYEPLV 328 (484)
Q Consensus 307 ~aiiDTGtt~~~lp~~~~~~l~ 328 (484)
.+.+|||++...+|...++.+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 3899999999999999777664
No 53
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=54.90 E-value=63 Score=31.98 Aligned_cols=106 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred eEEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHH--HHHHHhhCCCCcccccCC-CCceeccCCCccCCC
Q 011500 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPL--VSKIISQQPDLKVHTVHD-EYTCFQYSESVDEGF 360 (484)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l--~~~i~~~~~~~~~~~~~~-~~~C~~~~~~~~~~~ 360 (484)
-++.+||..+. |.+|||+-++.+..+-.++. -+.+..+..+.....+.. ...| .
T Consensus 238 iN~~ing~~VK-------------AfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~----------I 294 (380)
T KOG0012|consen 238 INCEINGVPVK-------------AFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGR----------I 294 (380)
T ss_pred EEEEECCEEEE-------------EEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccce----------e
Confidence 44667888886 99999999998888766543 222322222111111000 0111 1
Q ss_pred ceEEEEECCCcEEEECCCeeeEEcCCeEE-EEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 361 PNVTFHFENSVSLKVYPHEYLFPFEDLWC-IGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 361 p~i~f~f~gg~~~~l~p~~y~~~~~~~~C-~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
-.+.+++ |+. | ..| +.+.... +....||...||.+--.-|++++++-|+...
T Consensus 295 h~~~lki-~~~--------~------l~c~ftV~d~~------~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~ 347 (380)
T KOG0012|consen 295 HQAQLKI-EDL--------Y------LPCSFTVLDRR------DMDLLLGLDMLRRHQCCIDLKTNVLRIGNTE 347 (380)
T ss_pred EEEEEEe-ccE--------e------eccceEEecCC------CcchhhhHHHHHhccceeecccCeEEecCCC
Confidence 2334444 221 1 235 4454433 3457899999999999999999999998653
No 54
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.54 E-value=20 Score=32.57 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCceEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHH
Q 011500 276 QPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEP 326 (484)
Q Consensus 276 ~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~ 326 (484)
++||+++ ..|||+.+. .++|||.|.+.++.+..++
T Consensus 103 ~GHF~a~---~~VNGk~v~-------------fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-------------FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CCcEEEE---EEECCEEEE-------------EEEecCcceeecCHHHHHH
Confidence 4677644 569999886 7999999999999986544
No 55
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=49.24 E-value=58 Score=26.32 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=20.5
Q ss_pred EEEEEeCCCCc----eEEEEEEcCCCcee-Ee
Q 011500 77 YAKIGIGTPPK----DYYVQVDTGSDIMW-VN 103 (484)
Q Consensus 77 ~~~i~iGtP~q----~~~l~~DTGSs~~w-v~ 103 (484)
++++.|..|.| ++.+++|||.+..- ++
T Consensus 1 ~~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~ 32 (107)
T TIGR03698 1 TLDVELSNPKNPEFMEVRALVDTGFSGFLLVP 32 (107)
T ss_pred CEEEEEeCCCCCCceEEEEEEECCCCeEEecC
Confidence 36788988843 68999999998664 54
No 56
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=46.04 E-value=35 Score=21.63 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=8.0
Q ss_pred chhHHHHHHHHHHHhhc
Q 011500 4 CLRNCLCIVLIATAAVG 20 (484)
Q Consensus 4 ~~~~~~~ll~l~~a~~~ 20 (484)
++...+.+++++++++.
T Consensus 3 ~l~~a~~l~lLal~~a~ 19 (36)
T PF08194_consen 3 CLSLAFALLLLALAAAV 19 (36)
T ss_pred eeHHHHHHHHHHHHhcc
Confidence 34444455555554433
No 57
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=40.59 E-value=36 Score=20.23 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=15.7
Q ss_pred chhhHHHHHHHHHHHHHHhhcc
Q 011500 462 LNTQWCIILLLLSLLLHLLIHQ 483 (484)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~ 483 (484)
+....+++++|+.-+.|.|+|+
T Consensus 5 vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 5 IVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHcCc
Confidence 3446667777777778888876
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=40.12 E-value=38 Score=29.67 Aligned_cols=26 Identities=15% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 79 KIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 79 ~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
.+.++..+.++.++|||||..-.+..
T Consensus 36 ~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 36 IVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEeecCcEEEEEEeCCCccceeeh
Confidence 44455556999999999999887765
No 59
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.42 E-value=21 Score=29.56 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.2
Q ss_pred EEEccccc-eeecChhhHHHHH
Q 011500 308 TIIDSGTT-LAYLPEMVYEPLV 328 (484)
Q Consensus 308 aiiDTGtt-~~~lp~~~~~~l~ 328 (484)
.++|||-+ ++.+|.++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999887754
No 60
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=38.07 E-value=53 Score=27.45 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=25.6
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCC
Q 011500 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPR 112 (484)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~ 112 (484)
....|++++|+ ++++..++|||.-.+-+...-+..|.-
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~gL 59 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCGL 59 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTTG
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcCC
Confidence 45789999999 599999999999998887543345543
No 61
>PHA03054 IMV membrane protein; Provisional
Probab=33.92 E-value=43 Score=24.63 Aligned_cols=29 Identities=21% Similarity=0.097 Sum_probs=17.2
Q ss_pred cccccccchhhHHHHHHHHHHHHHHhhcc
Q 011500 455 YLTSDCSLNTQWCIILLLLSLLLHLLIHQ 483 (484)
Q Consensus 455 ~~ss~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (484)
.-++.|.+....+.++++++++++++++.
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~~flYLK~ 71 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLLIYLYLKV 71 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33555555555566666666677776653
No 62
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=33.46 E-value=56 Score=24.29 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=16.7
Q ss_pred ccCcccccccchhhHHHHHHHHHHHHHHhhc
Q 011500 452 GSHYLTSDCSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 452 ~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
..+...++|.+....+.++++++++++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444555555566666656666654
No 63
>PRK14756 hypothetical protein; Provisional
Probab=32.94 E-value=56 Score=19.29 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=17.3
Q ss_pred ccchhhHHHHHHHHHHHHHHhhc
Q 011500 460 CSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
.++...++.+.++++.++...+|
T Consensus 7 ~SL~tTvvaL~~Iva~~~ta~Lh 29 (29)
T PRK14756 7 FSLVTTIIVLGLIVAVGLTAALH 29 (29)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777888888878888777
No 64
>PHA02844 putative transmembrane protein; Provisional
Probab=28.66 E-value=61 Score=24.14 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=15.7
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhc
Q 011500 457 TSDCSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 457 ss~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
++.|.+....+.++++++++++++++
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555444556666666666676665
No 65
>PHA02819 hypothetical protein; Provisional
Probab=28.24 E-value=58 Score=23.99 Aligned_cols=27 Identities=0% Similarity=-0.030 Sum_probs=15.8
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhhc
Q 011500 456 LTSDCSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 456 ~ss~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
-++.|.+....+.++++++++++++++
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666665
No 66
>PHA02975 hypothetical protein; Provisional
Probab=28.04 E-value=55 Score=23.94 Aligned_cols=27 Identities=11% Similarity=0.180 Sum_probs=16.8
Q ss_pred ccccccchhhHHHHHHHHHHHHHHhhc
Q 011500 456 LTSDCSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 456 ~ss~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
.++.|.+....+.++++++++++++++
T Consensus 40 ~~~~~~~~ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 40 KSSLSIILIIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666667767777665
No 67
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=27.26 E-value=70 Score=25.57 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=18.3
Q ss_pred CCeeeechhhhceeEEEEeCCC
Q 011500 403 KNMTLLGDLVLSNKLVLYDLEN 424 (484)
Q Consensus 403 ~~~~iLG~~flr~~y~vfD~~~ 424 (484)
.-..+||...||.+--.-|+++
T Consensus 82 ~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 82 EKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred CcceEeeHHHHhhcceeeeccC
Confidence 3468999999999998888764
No 68
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=27.20 E-value=84 Score=18.71 Aligned_cols=21 Identities=33% Similarity=0.418 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHhhcc
Q 011500 463 NTQWCIILLLLSLLLHLLIHQ 483 (484)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (484)
....+++++|+.-+++.|+|+
T Consensus 6 i~G~ilv~lLlgYLvyALi~a 26 (29)
T PRK14748 6 ITGVLLVFLLLGYLVYALINA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHhCc
Confidence 445666677777677888775
No 69
>PHA02650 hypothetical protein; Provisional
Probab=24.80 E-value=71 Score=24.09 Aligned_cols=26 Identities=8% Similarity=0.052 Sum_probs=14.5
Q ss_pred cccccchhhHHHHHHHHHHHHHHhhc
Q 011500 457 TSDCSLNTQWCIILLLLSLLLHLLIH 482 (484)
Q Consensus 457 ss~~~~~~~~~~~~~~~~~~~~~~~~ 482 (484)
++.|.+....+.++++++++++++++
T Consensus 46 ~~~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 46 WFNGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566666666666654
No 70
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.58 E-value=1.2e+02 Score=21.70 Aligned_cols=20 Identities=20% Similarity=0.556 Sum_probs=16.7
Q ss_pred cEEEccccceeecChhhHHH
Q 011500 307 GTIIDSGTTLAYLPEMVYEP 326 (484)
Q Consensus 307 ~aiiDTGtt~~~lp~~~~~~ 326 (484)
.+++|||++...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 38999999999988887654
No 71
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=23.13 E-value=1e+02 Score=29.32 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=23.3
Q ss_pred ccEEEE---EEeCC---CCceEEEEEEcCCCceeEeCC
Q 011500 74 GLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 74 ~~Y~~~---i~iGt---P~q~~~l~~DTGSs~~wv~~~ 105 (484)
..|.++ |+||. +.....+++|||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 466655 68874 223467999999999999864
No 72
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=20.83 E-value=58 Score=17.13 Aligned_cols=12 Identities=8% Similarity=0.348 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 011500 5 LRNCLCIVLIAT 16 (484)
Q Consensus 5 ~~~~~~ll~l~~ 16 (484)
|+++++++.+++
T Consensus 2 Mk~vIIlvvLLl 13 (19)
T PF13956_consen 2 MKLVIILVVLLL 13 (19)
T ss_pred ceehHHHHHHHh
Confidence 445555443433
Done!