Query 011500
Match_columns 484
No_of_seqs 222 out of 1684
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 09:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3psg_A Pepsinogen; hydrolase(a 100.0 2.7E-59 9.3E-64 470.0 29.5 306 70-433 52-370 (370)
2 2x0b_A Renin; hydrolase-hormon 100.0 1.5E-59 5.2E-64 472.7 23.2 303 70-433 57-383 (383)
3 1tzs_A Cathepsin E; hydrolase, 100.0 3.6E-58 1.2E-62 459.7 28.7 317 61-441 14-350 (351)
4 3vla_A EDGP; extracellular, in 100.0 5.3E-58 1.8E-62 466.3 28.1 347 59-433 8-399 (413)
5 2apr_A Rhizopuspepsin; hydrola 100.0 1.9E-57 6.6E-62 449.7 27.8 298 71-433 12-324 (325)
6 1j71_A Candidapepsin, aspartic 100.0 3.3E-57 1.1E-61 449.8 28.3 303 72-442 10-333 (334)
7 2qzx_A Candidapepsin-5; aspart 100.0 3E-57 1E-61 451.8 26.8 306 72-442 10-340 (342)
8 1am5_A Pepsin, acid proteinase 100.0 2.4E-57 8.2E-62 449.1 25.5 302 70-433 8-324 (324)
9 1dpj_A Proteinase A; proteinas 100.0 6.9E-57 2.4E-61 446.8 28.3 302 70-433 9-329 (329)
10 4aa9_A Chymosin; hydrolase, as 100.0 2.6E-57 9E-62 448.2 24.8 300 70-433 7-320 (320)
11 1mpp_A Pepsin; hydrolase(acid 100.0 6.8E-57 2.3E-61 452.5 28.0 308 70-438 14-360 (361)
12 3cms_A Chymosin B; hydrolase, 100.0 3.1E-57 1.1E-61 447.9 25.0 300 70-433 10-323 (323)
13 3fv3_A SAPP1P-secreted asparti 100.0 7.1E-57 2.4E-61 448.7 27.6 301 72-442 10-338 (339)
14 3pvk_A Candidapepsin-2; hydrol 100.0 8E-57 2.7E-61 449.0 26.6 307 72-442 10-340 (342)
15 1htr_B Gastricsin; aspartyl pr 100.0 2.2E-56 7.4E-61 443.2 27.7 304 71-433 9-329 (329)
16 3c9x_A Trichoderma reesei aspa 100.0 1.4E-56 4.7E-61 444.3 23.0 300 71-432 12-329 (329)
17 1oew_A Endothiapepsin; hydrola 100.0 1.7E-56 5.9E-61 443.6 22.9 298 72-432 13-329 (329)
18 3k1w_A Renin; protease, altern 100.0 2.1E-56 7.2E-61 445.8 23.3 307 70-433 14-340 (341)
19 1qdm_A Prophytepsin; aspartic 100.0 9.1E-56 3.1E-60 456.9 28.2 314 70-432 48-477 (478)
20 3aup_A SBG7S, BG, basic 7S glo 100.0 2.9E-55 1E-59 446.6 29.1 346 61-436 11-396 (403)
21 3lpj_A Beta-secretase 1; alzhe 100.0 5.4E-55 1.8E-59 451.3 30.4 316 72-437 72-424 (455)
22 1miq_A Plasmepsin; aspartic pr 100.0 8.5E-56 2.9E-60 445.4 23.8 295 70-433 58-374 (375)
23 2ewy_A Beta-secretase 2; BACE2 100.0 8.5E-55 2.9E-59 440.8 29.4 315 71-436 10-358 (383)
24 2qp8_A Beta-secretase 1; BACE1 100.0 1.4E-54 4.7E-59 440.8 30.4 313 72-436 19-370 (395)
25 3vf3_A Beta-secretase 1; struc 100.0 4.1E-54 1.4E-58 438.5 32.5 315 72-436 26-377 (402)
26 3qvc_A Histo-aspartic protease 100.0 4E-55 1.4E-59 448.1 25.0 295 70-433 133-449 (451)
27 1yg9_A Aspartic protease BLA G 100.0 7.2E-55 2.5E-59 432.0 24.6 297 70-433 13-329 (330)
28 2bju_A Plasmepsin II; aspartic 100.0 8.4E-55 2.9E-59 445.1 21.4 296 70-433 134-450 (453)
29 1ibq_A Aspergillopepsin; aspar 100.0 3.2E-54 1.1E-58 426.6 24.1 296 72-433 12-325 (325)
30 1izd_A Aspartic proteinase; su 100.0 3.4E-54 1.2E-58 425.8 23.5 294 72-432 13-322 (323)
31 1t6e_X Xylanase inhibitor; two 100.0 2.3E-53 7.7E-58 429.5 29.7 332 70-434 10-374 (381)
32 1bxo_A Protein (penicillopepsi 100.0 3.1E-54 1.1E-58 426.3 19.0 294 72-433 13-323 (323)
33 1wkr_A Polyporopepsin; hydrola 100.0 1E-52 3.4E-57 418.7 26.7 291 73-437 11-337 (340)
34 1b5f_A Protein (cardosin A); h 100.0 2.2E-42 7.7E-47 326.3 17.0 217 70-333 9-238 (239)
35 1lya_B Cathepsin D; lysosomal 100.0 1.4E-37 4.8E-42 294.4 20.8 219 194-433 5-241 (241)
36 1lya_A Cathepsin D; lysosomal 99.9 2E-22 6.7E-27 161.1 7.9 84 70-183 9-96 (97)
37 1b5f_B Protein (cardosin A); h 99.7 1.3E-17 4.5E-22 130.7 7.8 76 355-433 8-87 (87)
38 3s8i_A Protein DDI1 homolog 1; 95.1 0.02 6.9E-07 48.5 4.7 105 286-432 29-135 (148)
39 2i1a_A DNA damage-inducible pr 95.0 0.047 1.6E-06 46.1 6.8 26 405-430 109-134 (148)
40 2hs1_A HIV-1 protease; ultra-h 84.2 1.2 4E-05 34.5 4.4 28 77-106 10-37 (99)
41 1fmb_A EIAV protease; hydrolas 83.4 1.1 3.7E-05 35.1 3.9 27 76-104 9-35 (104)
42 3ec0_A Protease; HIV-2, inhibi 80.5 2 6.7E-05 33.2 4.4 28 77-106 10-37 (99)
43 3liy_A Protease; hydrolase, hy 79.7 1.6 5.4E-05 34.5 3.6 31 77-107 12-45 (116)
44 2i1a_A DNA damage-inducible pr 79.6 1.6 5.5E-05 36.4 4.0 31 72-104 23-53 (148)
45 2hah_A Protease, retropepsin; 72.9 3.1 0.00011 33.1 3.7 26 76-104 15-40 (116)
46 3s8i_A Protein DDI1 homolog 1; 69.8 3.7 0.00013 34.3 3.7 31 73-105 22-52 (148)
47 3sqf_A Protease; folded monome 66.8 5.7 0.00019 31.4 3.9 28 77-106 11-38 (114)
48 3slz_A GAG-Pro-POL polyprotein 59.4 11 0.00036 30.8 4.4 30 74-105 21-50 (132)
49 3ka2_A [L-Ala51;Gly51']HIV-1 p 52.3 12 0.0004 33.0 3.8 27 76-104 9-35 (203)
50 2rsp_A RSV protease; hydrolase 51.3 14 0.00048 29.7 3.8 23 82-106 27-49 (124)
51 1lya_A Cathepsin D; lysosomal 40.5 23 0.0008 26.9 3.5 15 308-322 30-44 (97)
52 1fmb_A EIAV protease; hydrolas 32.7 24 0.00082 27.3 2.4 33 279-324 6-38 (104)
53 2hs1_A HIV-1 protease; ultra-h 32.6 27 0.00092 26.8 2.6 30 279-321 6-35 (99)
54 3ka2_A [L-Ala51;Gly51']HIV-1 p 29.8 43 0.0015 29.3 3.8 27 76-104 113-139 (203)
55 3slz_A GAG-Pro-POL polyprotein 29.4 45 0.0015 27.0 3.6 26 284-322 25-50 (132)
56 3ec0_A Protease; HIV-2, inhibi 28.6 33 0.0011 26.3 2.5 29 279-320 6-34 (99)
57 2hah_A Protease, retropepsin; 28.0 37 0.0013 26.8 2.8 30 278-321 11-40 (116)
58 1b5f_A Protein (cardosin A); h 26.0 61 0.0021 28.9 4.3 31 74-104 188-226 (239)
59 3c9x_A Trichoderma reesei aspa 21.9 70 0.0024 30.0 4.1 33 73-105 192-230 (329)
No 1
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A
Probab=100.00 E-value=2.7e-59 Score=470.01 Aligned_cols=306 Identities=24% Similarity=0.418 Sum_probs=253.8
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+.+|+++|+||||||+|.|+|||||+++||+|..|..| .|..++.|||++|+||+...
T Consensus 52 n~~d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~-----~C~~~~~y~~~~SsT~~~~~-------------- 112 (370)
T 3psg_A 52 NYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSL-----ACSDHNQFNPDDSSTFEATS-------------- 112 (370)
T ss_dssp GGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSG-----GGTTSCCBCGGGCTTCEEEE--------------
T ss_pred eccCCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCc-----ccCCCCCCCCccCcCcEECC--------------
Confidence 57789999999999999999999999999999999998642 23335799999999999966
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||+....+.+. ....+|||||||++..
T Consensus 113 --------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v--------~~~~Fg~a~~~~~~~~--~~~~~dGIlGLg~~~~s 173 (370)
T 3psg_A 113 --------QELSITYGTGS-MTGILGYDTVQVGGISD--------TNQIFGLSETEPGSFL--YYAPFDGILGLAYPSIS 173 (370)
T ss_dssp --------EEEEEESSSCE-EEEEEEEEEEEETTEEE--------EEEEEEEECSCCCGGG--GGCSCSEEEECSCGGGC
T ss_pred --------cEEEEEeCCce-EEEEEEEEEEeeCCccc--------CCeEEEEEEeeccccc--ccCCccceeccCCcccc
Confidence 79999999998 89999999999988653 3899999998866432 4567899999999754
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
+++++|++||+| +++||+||.+. ..+|.|+|||+|++ +++|+|+. .+.+|+|.+++|+||++.+..
T Consensus 174 ~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~g~l~~~pv~-~~~~w~v~l~~i~v~g~~~~~-- 250 (370)
T 3psg_A 174 ASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVS-VEGYWQITLDSITMDGETIAC-- 250 (370)
T ss_dssp GGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECS-EETTEEEEECEEESSSSEEEC--
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEEccCCCCCeEEEEEeeChHhcCCcceeeccc-ccceeEEEEeEEEECCEEEec--
Confidence 689999999999 69999999985 45899999999975 58999998 578999999999999987642
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
..++.+++||||+++++|.+++++|.+++++... ..+.+.++| .....+|+|+|+| +|.+++||+
T Consensus 251 -----~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~----~~g~~~v~C-----~~~~~lP~i~f~~-~g~~~~l~~ 315 (370)
T 3psg_A 251 -----SGGCQAIVDTGTSLLTGPTSAIANIQSDIGASEN----SDGEMVISC-----SSIDSLPDIVFTI-DGVQYPLSP 315 (370)
T ss_dssp -----TTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEEC----TTCCEECCG-----GGGGGCCCEEEEE-TTEEEEECH
T ss_pred -----CCCceEEEcCCCCcEECCHHHHHHHHHHhCCccc----CCCcEEEEC-----CCcccCCcEEEEE-CCEEEEECH
Confidence 3467899999999999999999999999876532 112233455 4456789999999 999999999
Q ss_pred CeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 378 HEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 378 ~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++|+++ .+..|+ +|...+.+... ++.||||++|||++|+|||++|+|||||+++
T Consensus 316 ~~yi~~-~~~~C~~~~~~~~~~~~~-~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a~ 370 (370)
T 3psg_A 316 SAYILQ-DDDSCTSGFEGMDVPTSS-GELWILGDVFIRQYYTVFDRANNKVGLAPVA 370 (370)
T ss_dssp HHHEEE-CSSCEEESEEEECCCTTS-CCEEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHhccc-CCCEEEEEEEeCCCCCCC-CCcEEeChHHhcceEEEEECCCCEEEEEEcC
Confidence 999998 445797 67765432211 2479999999999999999999999999974
No 2
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=100.00 E-value=1.5e-59 Score=472.68 Aligned_cols=303 Identities=22% Similarity=0.368 Sum_probs=254.5
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK----ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVY 145 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~----~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~ 145 (484)
++.+..|+++|+||||||+|.|+|||||+++||+|..|. .|.. ++.|||++|+||+...
T Consensus 57 n~~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~-------~~~y~~~~SsT~~~~~---------- 119 (383)
T 2x0b_A 57 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVY-------HKLFDASDSSSYKHNG---------- 119 (383)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHT-------SCCBCGGGCTTCEEEE----------
T ss_pred ecCCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccC-------CCCCCCCCCCcEEECC----------
Confidence 457889999999999999999999999999999999885 4654 4699999999999965
Q ss_pred CCCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCC
Q 011500 146 GGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGK 225 (484)
Q Consensus 146 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~ 225 (484)
|.|.+.|++|+ +.|.+++|+|+|++.. ++ +.|||+..+.+..+ ....+|||||||+
T Consensus 120 ------------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~--------v~-~~Fg~a~~~~g~~f--~~~~~dGIlGLg~ 175 (383)
T 2x0b_A 120 ------------TELTLRYSTGT-VSGFLSQDIITVGGIT--------VT-QMFGEVTEMPALPF--MLAEFDGVVGMGF 175 (383)
T ss_dssp ------------EEEEEECSSCE-EEEEEEEEEEEETTEE--------EE-EEEEEEEECCHHHH--TTCSSSEEEECSC
T ss_pred ------------cEEEEEcCCcc-EEEEEEeeEEEEcCce--------EE-EEEEEEEecCCccc--ccCCCceEeccCC
Confidence 79999999998 8999999999998753 44 89999998765322 3457899999999
Q ss_pred CCC------cHHHHHHhcCCC-CcceeeeecCC-C----CcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEc
Q 011500 226 SNS------SMISQLASSGGV-RKMFAHCLDGI-N----GGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVG 289 (484)
Q Consensus 226 ~~~------s~~~~L~~~g~i-~~~FSl~l~~~-~----~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~ 289 (484)
+.. +++++|++||+| +++||+||.+. . .+|.|+|||+|+++ ++|+|+. .+.+|+|.+++|+||
T Consensus 176 ~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv~-~~~~w~v~l~~i~v~ 254 (383)
T 2x0b_A 176 IEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI-KTGVWQIQMKGVSVG 254 (383)
T ss_dssp GGGCGGGCCCHHHHHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEBS-STTSCEEEECEEEES
T ss_pred CccccCCCCcHHHHHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEcC-CCceEEEEEeEEEeC
Confidence 764 589999999999 69999999985 2 38999999999864 7899998 578999999999999
Q ss_pred cEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECC
Q 011500 290 LDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFEN 369 (484)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~g 369 (484)
++.+. ...++.+|+||||+++++|.+++++|.+++++.. ..+.+.++|+ ..+.+|+|+|+| +
T Consensus 255 ~~~~~-------~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-----~~g~~~v~C~-----~~~~~P~i~f~~-~ 316 (383)
T 2x0b_A 255 SSTLL-------CEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-----RLFDYVVKCN-----EGPTLPDISFHL-G 316 (383)
T ss_dssp SCCCB-------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-----CSSCEEEEGG-----GTTTCCCEEEEE-T
T ss_pred CceEE-------cCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-----cCCcEEEecc-----ccccCceEEEEE-C
Confidence 98642 2346789999999999999999999999997653 1223345674 345789999999 8
Q ss_pred CcEEEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 370 SVSLKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 370 g~~~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
|.+|+|||++|+++.. +..|+ +|+..+.+.. ..+.||||++|||++|+|||++|+|||||+++
T Consensus 317 g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~ 383 (383)
T 2x0b_A 317 GKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPP-TGPTWALGATFIRKFYTEFDRRNNRIGFALAR 383 (383)
T ss_dssp TEEEEECHHHHBCCCCCCTTSEEEBSEEECCCCTT-TCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CEEEEECHHHhEeeccCCCCCeEEEEEEecccCCC-CCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence 9999999999998863 46898 7877653221 24689999999999999999999999999864
No 3
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=100.00 E-value=3.6e-58 Score=459.68 Aligned_cols=317 Identities=24% Similarity=0.359 Sum_probs=257.2
Q ss_pred CCCCCCCCCcCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCC
Q 011500 61 DLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQ 138 (484)
Q Consensus 61 ~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~ 138 (484)
..|+. ++.++.|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 14 ~~~l~----n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~--- 79 (351)
T 1tzs_A 14 KEPLI----NYLDMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKT-------HSRFQPSQSSTYSQPG--- 79 (351)
T ss_dssp CCTTG----GGSSSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT-------SCCBCGGGCTTCBCCS---
T ss_pred ceece----ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCC-------CCcCCcccCcceEECC---
Confidence 45665 456789999999999999999999999999999999986 5654 3699999999999854
Q ss_pred cccCCCCCCCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccc
Q 011500 139 EFCHGVYGGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALD 218 (484)
Q Consensus 139 ~~C~~~~~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~ 218 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ .++.|||+....+... .....+
T Consensus 80 -------------------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~~--~~~~~~ 129 (351)
T 1tzs_A 80 -------------------QSFSIQYGTGS-LSGIIGADQVSVEGLTV--------VGQQFGESVTEPGQTF--VDAEFD 129 (351)
T ss_dssp -------------------CEEEEESSSCE-EEEEEEEEEEEETTEEE--------EEEEEEEECSCCCGGG--GGCSCS
T ss_pred -------------------CEEEEEeCCCC-eEEEEEEeEEEECCeEE--------CCeEEEEEEecccccc--ccCCCc
Confidence 79999999998 89999999999987543 3899999988765432 345689
Q ss_pred eeeecCCCCC------cHHHHHHhcCCC-CcceeeeecCCC---CcceEEeCCcCCC----CceEeeCCCCCCceEEEEe
Q 011500 219 GIIGFGKSNS------SMISQLASSGGV-RKMFAHCLDGIN---GGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMT 284 (484)
Q Consensus 219 GIlGLg~~~~------s~~~~L~~~g~i-~~~FSl~l~~~~---~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~ 284 (484)
||||||++.. +++++|++||+| +++||+||.+.. .+|.|+|||+|++ ++.|+|+. .+.+|.|.++
T Consensus 130 GilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~ 208 (351)
T 1tzs_A 130 GILGLGYPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSSNPEGGAGSELIFGGYDHSHFSGSLNWVPVT-KQAYWQIALD 208 (351)
T ss_dssp EEEECSCGGGSGGGCCCHHHHHHHTTCCSSSEEEEECCCCC--CTTCEEEETSCCGGGBCSCCEEEECS-EETTEEEEEE
T ss_pred eEEecCCccccccCCCcHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEECCCCHHHcCCceEEEecC-CCceEEEEeC
Confidence 9999999764 589999999999 699999999852 2799999999975 58999998 5689999999
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEE
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVT 364 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~ 364 (484)
+|+|+++.+. ......+++||||+++++|.+++++|.+++++.... +.+.++|+ ....+|+|+
T Consensus 209 ~i~v~~~~~~-------~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~-----g~~~~~C~-----~~~~~P~i~ 271 (351)
T 1tzs_A 209 NIQVGGTVMF-------CSEGCQAIVDTGTSLITGPSDKIKQLQNAIGAAPVD-----GEYAVECA-----NLNVMPDVT 271 (351)
T ss_dssp EEEETTEEEE-------CTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS-----SSEEECGG-----GGGGSCCEE
T ss_pred EEEECCceEE-------cCCCceEEeccCCcceeCCHHHHHHHHHHhCCcccC-----CeEEEeCC-----CCccCCcEE
Confidence 9999998753 123567999999999999999999999999765421 23445674 335689999
Q ss_pred EEECCCcEEEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCccc
Q 011500 365 FHFENSVSLKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKV 440 (484)
Q Consensus 365 f~f~gg~~~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~~~ 440 (484)
|+| +|++++|||++|+++.. +..|+ +|...+.+.. ..+.||||++|||++|+|||++++|||||+++|.+...+
T Consensus 272 f~f-~g~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~s~~~~ 349 (351)
T 1tzs_A 272 FTI-NGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPP-AGPLWILGDVFIRQFYSVFDRGNNRVGLAPAVPWSHPQF 349 (351)
T ss_dssp EEE-TTEEEEECTTTSEECC-----CCEEESEEECCCCTT-TCSCEEECHHHHHHEEEEEETTTTEEEEEEBC-------
T ss_pred EEE-CCEEEEECHHHhEeeccCCCCCeEEEEEEECCCCCC-CCCeEEEChHHhhheEEEEECCCCEEEEEECCcccchhh
Confidence 999 89999999999999863 46897 6876543211 246799999999999999999999999999999876555
Q ss_pred e
Q 011500 441 R 441 (484)
Q Consensus 441 ~ 441 (484)
+
T Consensus 350 ~ 350 (351)
T 1tzs_A 350 E 350 (351)
T ss_dssp -
T ss_pred c
Confidence 3
No 4
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A
Probab=100.00 E-value=5.3e-58 Score=466.27 Aligned_cols=347 Identities=21% Similarity=0.375 Sum_probs=275.4
Q ss_pred ccCCCCCCCCCcCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCC
Q 011500 59 GVDLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQ 138 (484)
Q Consensus 59 ~~~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~ 138 (484)
++.+|+.+ +..+++|+++|.||||||++.|+|||||+++||+|.+| .+|+||+.++|++
T Consensus 8 ~~~~pv~~---d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~~c------------------~~Sst~~~v~C~s 66 (413)
T 3vla_A 8 ALVVPVKK---DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCDQN------------------YVSSTYRPVRCRT 66 (413)
T ss_dssp EEEEEEEE---CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSS------------------CCCTTCEECBTTS
T ss_pred cEEEEeee---cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccCCC------------------CCCCCcCccCCCc
Confidence 34456654 34688999999999999999999999999999998764 2689999999999
Q ss_pred cccCCCCCCCC--------CCCCCCCCCceeEEe-CCCCcEeEEEEEEEEEEecccCCcc-ccccCcceEEeeeeeccCC
Q 011500 139 EFCHGVYGGPL--------TDCTANTSCPYLEIY-GDGSSTTGYFVQDVVQYDKVSGDLQ-TTSTNGSLIFGCGARQSGN 208 (484)
Q Consensus 139 ~~C~~~~~~~~--------~~c~~~~~~~~~~~Y-~~gs~~~G~~~~D~v~ig~~~~~~~-~~~~~~~~~fg~~~~~~~~ 208 (484)
+.|...+.... +.|. ++.|.|.+.| ++|+.+.|++++|+|+|+...+... ....++++.|||+..+...
T Consensus 67 ~~C~~~~~~~~~~c~s~~~~~c~-~~~c~~~i~Y~~d~~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~ 145 (413)
T 3vla_A 67 SQCSLSGSIACGDCFNGPRPGCN-NNTCGVFPENPVINTATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQ 145 (413)
T ss_dssp HHHHHTTCCEEECCSSCCBTTBC-SSEEEECCEETTTTEECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGT
T ss_pred ccccccccCCCcccccCCCCCCC-CCcCcceeecCcCCceeeeEEEEEEEEecccCCCCcccceeeCCEEEECccccccc
Confidence 99987654221 2344 4569999999 5888799999999999985433211 0123568999999986322
Q ss_pred CCCCCCcccceeeecCCCCCcHHHHHHhcCCCCcceeeeecCC-CCcceEEeCCcCC---------CC-ceEeeCCCCC-
Q 011500 209 LDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ---------PE-VNKTPLVPNQ- 276 (484)
Q Consensus 209 ~~~~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FSl~l~~~-~~~G~l~~Ggid~---------~~-~~~~p~~~~~- 276 (484)
. ....+|||||||++..|++.||.+++.++++||+||.+. ..+|.|+||++|. .. ++|+|++.++
T Consensus 146 g---~~~~~dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~ 222 (413)
T 3vla_A 146 N---LASGVVGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPV 222 (413)
T ss_dssp T---SCTTCCEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSS
T ss_pred C---cccccccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCc
Confidence 1 234689999999999999999999988899999999974 5679999999874 24 9999998653
Q ss_pred ------------CceEEEEeEEEEccEEeecCCcccccC--CCCcEEEccccceeecChhhHHHHHHHHHhhCC--CCcc
Q 011500 277 ------------PHYSINMTAVQVGLDFLNLPTDVFGVG--DNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP--DLKV 340 (484)
Q Consensus 277 ------------~~w~v~l~~i~v~~~~~~~~~~~~~~~--~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~--~~~~ 340 (484)
.+|+|+|++|+||++.+.++...+..+ +.+++|+||||++++||.++|++|.+++.+... ..+.
T Consensus 223 ~~~~~~~~~~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~ 302 (413)
T 3vla_A 223 STSATSTQGEPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITR 302 (413)
T ss_dssp CCSSSCCTTCCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccCCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCc
Confidence 689999999999999998887766533 357899999999999999999999999987642 1111
Q ss_pred -cccCCCCceeccCCCcc----CCCceEEEEECC-CcEEEECCCeeeEEc-CCeEEEEEeccCcccCCCCCeeeechhhh
Q 011500 341 -HTVHDEYTCFQYSESVD----EGFPNVTFHFEN-SVSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVL 413 (484)
Q Consensus 341 -~~~~~~~~C~~~~~~~~----~~~p~i~f~f~g-g~~~~l~p~~y~~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~fl 413 (484)
........||..++... ..+|+|+|+|+| ++.|+|+|++|+++. ++..|+++..... ...+.||||+.||
T Consensus 303 ~~~~~~~~~C~~~~~~~~~~~~~~lP~i~f~f~g~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~---~~~~~~IlGd~fl 379 (413)
T 3vla_A 303 VASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVDGGS---NLRTSIVIGGHQL 379 (413)
T ss_dssp ECCCTTCSCEEECTTCCEETTEECCCCEEEECSSTTCEEEECHHHHEEEEETTEEEECEEEEES---SCSSSEEECHHHH
T ss_pred CCCCCCCcceeccCCccccccccCCCcEEEEEcCCcEEEEeCccceEEEeCCCcEEEEEEecCC---CcccceeEehhhh
Confidence 11223468998765321 368999999944 389999999999986 5678998887542 1235799999999
Q ss_pred ceeEEEEeCCCCEEEEEeCC
Q 011500 414 SNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 414 r~~y~vfD~~~~rIGfA~~~ 433 (484)
|++|+|||++|+|||||++.
T Consensus 380 ~~~~vvfD~~~~riGfa~~~ 399 (413)
T 3vla_A 380 EDNLVQFDLATSRVGFSGTL 399 (413)
T ss_dssp TTEEEEEETTTTEEEEEEEG
T ss_pred cCeEEEEECCCCEEEEEEec
Confidence 99999999999999999853
No 5
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Probab=100.00 E-value=1.9e-57 Score=449.66 Aligned_cols=298 Identities=24% Similarity=0.403 Sum_probs=250.0
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
..+..|+++|+||||||++.|+|||||+++||+|.+|..| |..++.|||++|+|++...
T Consensus 12 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~c------~~~~~~y~~~~SsT~~~~~--------------- 70 (325)
T 2apr_A 12 GNDIEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNC------GSGQTKYDPNQSSTYQADG--------------- 70 (325)
T ss_dssp TTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSC------CTTSCCBCGGGCTTCEEEE---------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCchH------hcCCCCCCcccCCCeeeCC---------------
Confidence 4678999999999999999999999999999999999888 2335799999999999854
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC--
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 228 (484)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+...++.| .....+||||||++..
T Consensus 71 -------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v--------~~~~fg~~~~~~~~f---~~~~~~GilGLg~~~~s~ 132 (325)
T 2apr_A 71 -------RTWSISYGDGSSASGILAKDNVNLGGLLI--------KGQTIELAKREAASF---ASGPNDGLLGLGFDTITT 132 (325)
T ss_dssp -------EEEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHH---HTSSCSEEEECSCGGGCS
T ss_pred -------CEEEEEECCCCCEEEEEEEEEEEECCEEE--------CcEEEEEEeccCccc---ccCCCceEEEeCCccccc
Confidence 79999999999889999999999987543 389999999876554 2334899999998653
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCC--CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGI--NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~--~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
+++++|++||+| +++||+||.+. ..+|.|+|||+|++ ++.|+|+...+.+|.|.+++|+||++ +.
T Consensus 133 ~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~vg~~-~~-- 209 (325)
T 2apr_A 133 VRGVKTPMDNLISQGLISRPIFGVYLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTS-TV-- 209 (325)
T ss_dssp STTCCCHHHHHHHTTSCSSSEEEEEECCGGGTCCEEEEETCCCGGGBCSCCEEEECBCTTSSCEEEECEEEETTE-EE--
T ss_pred ccCCCCHHHHHHhcCCCCCceEEEEecCCCCCCCCEEEEccCCchhccCceEEEEccCCCCEEEEEEeEEEECCE-ec--
Confidence 589999999999 69999999653 56899999999975 48999998667899999999999993 21
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEEC
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (484)
.....+++||||+++++|+++|+++++++.+..... ..+.++|+ . ..+|+|+|+| +|.+++||
T Consensus 210 ------~~~~~~iiDSGTs~~~lP~~~~~~~~~~~~~~~~~~----g~~~~~C~-----~-~~~p~i~f~f-~g~~~~ip 272 (325)
T 2apr_A 210 ------ASSFDGILDTGTTLLILPNNIAASVARAYGASDNGD----GTYTISCD-----T-SAFKPLVFSI-NGASFQVS 272 (325)
T ss_dssp ------ECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSS----SCEEECSC-----G-GGCCCEEEEE-TTEEEEEC
T ss_pred ------CCCceEEEecCCccEECCHHHHHHHHHHHhcccCCC----CeEEEECC-----C-CCCCcEEEEE-CCEEEEEC
Confidence 234679999999999999999999999997765422 23345674 2 3489999999 66699999
Q ss_pred CCeeeEEcCCeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 377 PHEYLFPFEDLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 377 p~~y~~~~~~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+++|+++..+..|++ |.... .+.||||++|||++|+|||++|+|||||+++
T Consensus 273 ~~~~~~~~~~~~C~~~i~~~~------~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 324 (325)
T 2apr_A 273 PDSLVFEEFQGQCIAGFGYGN------WGFAIIGDTFLKNNYVVFNQGVPEVQIAPVA 324 (325)
T ss_dssp GGGGEEEEETTEEEESEEEES------SSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHHEEEcCCCCeEEEEEEcCC------CCCEEECHHHhcceEEEEECCCCEEEEEecC
Confidence 999998754568974 55433 3579999999999999999999999999874
No 6
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=100.00 E-value=3.3e-57 Score=449.83 Aligned_cols=303 Identities=20% Similarity=0.337 Sum_probs=253.3
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCC--CCCCCCC--cCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI--QCKECPR--RSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~--~c~~C~~--~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
.+..|+++|+||||||++.|+|||||+++||++. +|..|.. ....|..++.|||++|+|++...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------ 77 (334)
T 1j71_A 10 EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLN------------ 77 (334)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEE------------
T ss_pred CCcEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCC------------
Confidence 3678999999999999999999999999999976 6765421 11235566899999999999976
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+.+.|.+++|+|+|++.. ++++.|||+.... ..+||||||++.
T Consensus 78 ----------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------~~~~~fg~~~~~~---------~~~GilGLg~~~ 130 (334)
T 1j71_A 78 ----------QDFSIEYGDLTSSQGSFYKDTVGFGGIS--------IKNQQFADVTTTS---------VDQGIMGIGFTA 130 (334)
T ss_dssp ----------EEEEEEBTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEES---------SSSCEEECSCGG
T ss_pred ----------CceEEEECCCCEEEEEEEEEEEEECCEE--------EccEEEEEEEecC---------CCccEEEEcCCc
Confidence 6999999999988999999999998754 3489999998763 368999999975
Q ss_pred C--------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEe
Q 011500 228 S--------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFL 293 (484)
Q Consensus 228 ~--------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~ 293 (484)
. +++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|.+++|+|+++.+
T Consensus 131 ~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~ 209 (334)
T 1j71_A 131 DEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVT-SSVELRVHLGSINFDGTSV 209 (334)
T ss_dssp GSSTTCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSEEEEEEEEECC-CSSSCEEEEEEEEETTEEE
T ss_pred ccCccccCCcHHHHHHHCCCCCccEEEEEeCCCCCCCeEEEEeeechHHccCceEEEEcc-CCCeEEEEEeEEEECCEec
Confidence 3 799999999999 69999999874 568999999999876 7899998 5569999999999999887
Q ss_pred ecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCC-CceeccCCCccCCCceEEEEECCCcE
Q 011500 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDE-YTCFQYSESVDEGFPNVTFHFENSVS 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~-~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (484)
.. ...+++||||+++++|++++++|++++++... .....+. ++|+ .+|+|+|+|.+|++
T Consensus 210 ~~---------~~~~iiDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~~~~~~~~C~--------~~p~i~f~f~~g~~ 269 (334)
T 1j71_A 210 ST---------NADVVLDSGTTITYFSQSTADKFARIVGATWD---SRNEIYRLPSCD--------LSGDAVFNFDQGVK 269 (334)
T ss_dssp EE---------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEE---TTTTEEECSSSC--------CCSEEEEEESTTCE
T ss_pred cC---------CccEEEeCCCCcEecCHHHHHHHHHHcCCccc---CCCceEEEEcCC--------CCCceEEEEcCCcE
Confidence 43 24699999999999999999999999977652 1111233 5673 37999999977899
Q ss_pred EEECCCeeeEEc-CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCcccee
Q 011500 373 LKVYPHEYLFPF-EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRD 442 (484)
Q Consensus 373 ~~l~p~~y~~~~-~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~~~~~ 442 (484)
++||+++|+++. ++..|+ +|... +.||||++|||++|+|||++++|||||+++|++..+|+.
T Consensus 270 ~~i~~~~y~~~~~~~~~C~~~i~~~--------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~i~~ 333 (334)
T 1j71_A 270 ITVPLSELILKDSDSSICYFGISRN--------DANILGDNFLRRAYIVYDLDDKTISLAQVKYTSSSDISA 333 (334)
T ss_dssp EEEEGGGGEEECSSSSCEEESEEEC--------TTCEECHHHHTTEEEEEETTTTEEEEEEECCCSCCCEEE
T ss_pred EEECHHHheeecCCCCeeEEEEeEC--------CCcEEChHhhccEEEEEECCCCEEEEEecCCCCccceEE
Confidence 999999999987 334597 55542 359999999999999999999999999999997766653
No 7
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=100.00 E-value=3e-57 Score=451.75 Aligned_cols=306 Identities=23% Similarity=0.333 Sum_probs=252.8
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCC--CCCCCCC--cCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI--QCKECPR--RSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~--~c~~C~~--~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
.++.|+++|+||||+|++.|+|||||+++||++. +|..|.. ....|..++.|||++|+|++...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------ 77 (342)
T 2qzx_A 10 EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLN------------ 77 (342)
T ss_dssp CSSCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEE------------
T ss_pred CCeEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCC------------
Confidence 4678999999999999999999999999999976 6765432 12345567899999999999976
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+.+.|.+++|+|+|++.. ++++.|||+.... ..+||||||++.
T Consensus 78 ----------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~--------v~~~~fg~~~~~~---------~~~GilGLg~~~ 130 (342)
T 2qzx_A 78 ----------TRFDIKYGDGSYAKGKLYKDTVGIGGVS--------VRDQLFANVWSTS---------ARKGILGIGFQS 130 (342)
T ss_dssp ----------EEEEEECTTSCEEEEEEEEEEEEETTEE--------EEEEEEEEEEEEC---------SSSCEEECSCGG
T ss_pred ----------CcEEEEeCCCCeEEEEEEEEEEEECCEE--------ecceEEEEEEecC---------CCcCEEEEcccc
Confidence 6999999999988999999999998754 3489999999763 368999999975
Q ss_pred C--------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEe
Q 011500 228 S--------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFL 293 (484)
Q Consensus 228 ~--------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~ 293 (484)
. +++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|++ ...+|.|.+++|+|+++.+
T Consensus 131 ~~~~~~~~~~~~~~L~~qg~i~~~~Fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~ 209 (342)
T 2qzx_A 131 GEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQIIFGGIDKAKYSGSLVDLPIT-SEKKLTVGLRSVNVRGRNV 209 (342)
T ss_dssp GCSSSSCCCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECC-CSSSCEEEEEEEEETTEEE
T ss_pred ccCCCccCccHHHHHHHCCCcCccEEEEEeCCCCCCCeEEEECccchhhEecceEEEecc-CCceEEEEEeEEEECCEec
Confidence 3 899999999999 69999999874 467999999999764 8899998 4569999999999999887
Q ss_pred ecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEE
Q 011500 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSL 373 (484)
Q Consensus 294 ~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~ 373 (484)
.. ...+++||||+++++|++++++|++++++...........+.++| . .+|+|+|+|++|+++
T Consensus 210 ~~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~~~~~~~~~~~C-----~---~~p~i~f~f~~g~~~ 272 (342)
T 2qzx_A 210 DA---------NTNVLLDSGTTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADC-----K---TSGTIDFQFGNNLKI 272 (342)
T ss_dssp EE---------EEEEEECTTCSSEEECHHHHHHHHHHHTCEEEECTTSCEEEEECT-----T---CCCEEEEEETTTEEE
T ss_pred CC---------CcCEEEeCCCCCEEcCHHHHHHHHHHhCCeeeeccCCCcEEEEEC-----C---CCCcEEEEECCCcEE
Confidence 53 246999999999999999999999999765421000111223456 2 379999999768999
Q ss_pred EECCCeeeEEc------CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCcccee
Q 011500 374 KVYPHEYLFPF------EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRD 442 (484)
Q Consensus 374 ~l~p~~y~~~~------~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~~~~~ 442 (484)
+||+++|+++. ++..|+ ++... +.||||++|||++|+|||++++|||||+++|++..+|+.
T Consensus 273 ~i~~~~~~~~~~~~~~~~~~~C~~~i~~~--------~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~~~~i~~ 340 (342)
T 2qzx_A 273 SVPVSEFLFQTYYTSGKPFPKCEVRIRES--------EDNILGDNFLRSAYVVYNLDDKKISMAPVKYTSESDIVA 340 (342)
T ss_dssp EEEGGGGEECCBCTTSCBCSSEEESEEEC--------SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCCEEE
T ss_pred EEcHHHhcccccccCCCCCCccEEEEecC--------CCcEeChHhhhcEEEEEECCCCEEEEEeeCCCCCCCeEE
Confidence 99999999973 235797 45442 359999999999999999999999999999998777654
No 8
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=100.00 E-value=2.4e-57 Score=449.09 Aligned_cols=302 Identities=24% Similarity=0.406 Sum_probs=253.7
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 8 n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------ 68 (324)
T 1am5_A 8 NEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSN-------HNKFKPRQSSTYVETG------------ 68 (324)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHT-------SCCBCGGGCTTCEEEE------------
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccC-------CCcCCCccCCCeEeCC------------
Confidence 356789999999999999999999999999999999886 4654 3689999999999865
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+ +.|.+++|+|++++..+ +++.|||+....+.+. .....+||||||++.
T Consensus 69 ----------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~~--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~ 127 (324)
T 1am5_A 69 ----------KTVDLTYGTGG-MRGILGQDTVSVGGGSD--------PNQELGESQTEPGPFQ--AAAPFDGILGLAYPS 127 (324)
T ss_dssp ----------EEEEEECSSCE-EEEEEEEEEEESSSSCE--------EEEEEEEEEECCSTTT--TTCSSSEEEECSCGG
T ss_pred ----------cEEEEEECCCC-eEEEEEECceeECCcEE--------cccEEEEEEecccccc--cCCCCceEEecCCcc
Confidence 69999999998 69999999999987543 3899999998766432 346789999999975
Q ss_pred C------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeec
Q 011500 228 S------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (484)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (484)
. +++++|++||+| +++||+||.+. ..+|.|+|||+|++ ++.|+|+. .+.+|.|.+++|+|+++.+..
T Consensus 128 ~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~ 206 (324)
T 1am5_A 128 IAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVT-AEKYWQVALDGITVNGQTAAC 206 (324)
T ss_dssp GCGGGCCCHHHHHHHTTCSSSSEEEEECCSTTCSCEEEEESSCCGGGBCSCCEEEEEE-EETTEEEEECEEEETTEECCC
T ss_pred ccccCCCchHHhHHhcCCCCCCEEEEEecCCCCCCcEEEECccCHHHcCCceEEEecC-CCcEEEEEEeEEEECCceeec
Confidence 3 589999999999 69999999975 35899999999975 58999997 568999999999999987531
Q ss_pred CCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEE
Q 011500 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (484)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (484)
.+ ..+++||||+++++|++++++|.+++++. . ..+.+.++|+ ..+.+|+|+|+| +|.+++|
T Consensus 207 -------~~-~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g~~~~~C~-----~~~~~P~i~f~f-~g~~~~i 267 (324)
T 1am5_A 207 -------EG-CQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQGEMMGNCA-----SVQSLPDITFTI-NGVKQPL 267 (324)
T ss_dssp -------CC-EEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCCCEECCTT-----SSSSSCCEEEEE-TTEEEEE
T ss_pred -------cC-ceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCCcEEEeCC-----CcccCCcEEEEE-CCEEEEE
Confidence 12 67999999999999999999999999765 1 1222345664 345789999999 8999999
Q ss_pred CCCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 376 YPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 376 ~p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
||++|+++. +..|+ +|...+.+.. ..+.||||++|||++|+|||++++|||||+++
T Consensus 268 ~~~~y~~~~-~~~C~~~~~~~~~~~~-~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a~ 324 (324)
T 1am5_A 268 PPSAYIEGD-QAFCTSGLGSSGVPSN-TSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324 (324)
T ss_dssp CHHHHEEES-SSCEEECEEECCSCCS-SSCEEEECHHHHHHEEEEEETTTTEEEEEEBC
T ss_pred CHHHhcccC-CCeEEEEEEECccCCC-CCCcEEEChHHhccEEEEEECCCCEEEEEECC
Confidence 999999986 66897 7876543211 24689999999999999999999999999974
No 9
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=100.00 E-value=6.9e-57 Score=446.76 Aligned_cols=302 Identities=24% Similarity=0.431 Sum_probs=252.1
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 9 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------ 69 (329)
T 1dpj_A 9 NYLNAQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFL-------HSKYDHEASSSYKANG------------ 69 (329)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT-------SCCBCGGGCTTCEEEE------------
T ss_pred ecCCCEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCC-------cCcCCcccCcCeEECC------------
Confidence 4567899999999999999999999999999999999875 654 3689999999999855
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccC-CCCCCCCcccceeeecCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-NLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~~~~GIlGLg~~ 226 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||++...+ .| .....+||||||++
T Consensus 70 ----------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~f---~~~~~~GilGLg~~ 127 (329)
T 1dpj_A 70 ----------TEFAIQYGTGS-LEGYISQDTLSIGDLTI--------PKQDFAEATSEPGLTF---AFGKFDGILGLGYD 127 (329)
T ss_dssp ----------EEEEEEETTEE-EEEEEEEEEEEETTEEE--------EEEEEEEEEECCHHHH---TTCSCSEEEECSCG
T ss_pred ----------cEEEEEECCce-EEEEEEEEEEEECCeEE--------CCeEEEEEEecCcccc---ccCCcceEEEeCCc
Confidence 79999999995 89999999999987543 3899999998765 23 23568999999997
Q ss_pred CC------cHHHHHHhcCCC-CcceeeeecCCC----CcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccE
Q 011500 227 NS------SMISQLASSGGV-RKMFAHCLDGIN----GGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLD 291 (484)
Q Consensus 227 ~~------s~~~~L~~~g~i-~~~FSl~l~~~~----~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (484)
.. +++++|++||+| +++||+||.+.. .+|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+|+++
T Consensus 128 ~~s~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~ 206 (329)
T 1dpj_A 128 TISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVR-RKAYWEVKFEGIGLGDE 206 (329)
T ss_dssp GGCGGGCCCHHHHHHHTTCCSSSEEEEEECCGGGTCSSSEEEEESSCCGGGEEEEEEEEECS-SBTTBEEEEEEEEETTE
T ss_pred hhhccCCCCHHHHHHhcCCcCCCEEEEEecCCCCCCCCCcEEEEcCCChhhcCCceEEEEcC-CCceEEEEeeeEEECCe
Confidence 64 478999999999 699999998742 37999999999764 7899998 57899999999999998
Q ss_pred EeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCc
Q 011500 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSV 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~ 371 (484)
.+.. .+..+++||||+++++|.+++++|.+++++... . ..||.++|.....+|+|+|+| +|.
T Consensus 207 ~~~~--------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~----~-----~g~~~~~C~~~~~~P~i~f~f-~g~ 268 (329)
T 1dpj_A 207 YAEL--------ESHGAAIDTGTSLITLPSGLAEMINAEIGAKKG----W-----TGQYTLDCNTRDNLPDLIFNF-NGY 268 (329)
T ss_dssp EEEC--------SSCEEEECTTCSCEEECHHHHHHHHHHHTCEEC----T-----TSSEEECGGGGGGCCCEEEEE-TTE
T ss_pred EecC--------CCccEEeeCCCCcEECCHHHHHHHHHHhCCccC----C-----CCeEEEECCCCCcCCcEEEEE-CCE
Confidence 7742 246799999999999999999999999865421 1 124444455556789999999 899
Q ss_pred EEEECCCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 372 SLKVYPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 372 ~~~l~p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+++|||++|+++.+ ..|+ +|...+.+.. ..+.||||++|||++|+|||++|+|||||+++
T Consensus 269 ~~~i~~~~y~~~~~-~~C~~~~~~~~~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 329 (329)
T 1dpj_A 269 NFTIGPYDYTLEVS-GSCISAITPMDFPEP-VGPLAIVGDAFLRKYYSIYDLGNNAVGLAKAI 329 (329)
T ss_dssp EEEECTTTSEEEET-TEEEECEEECCCCTT-TCSEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhEecCC-CEEEEEEEecccCCC-CCCcEEEChHHhcceEEEEECCCCEEEEEECC
Confidence 99999999999865 5897 7776542211 24689999999999999999999999999874
No 10
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=100.00 E-value=2.6e-57 Score=448.25 Aligned_cols=300 Identities=23% Similarity=0.400 Sum_probs=253.0
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.+..|+++|+||||||++.|++||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 7 n~~d~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------ 67 (320)
T 4aa9_A 7 SYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKN-------HHRFDPRKSSTFRNLG------------ 67 (320)
T ss_dssp -CCCCCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT-------SCCBCGGGCTTCEEEE------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCC-------CCCCCCCCCcCeEcCC------------
Confidence 567899999999999999999999999999999999987 3544 4699999999999976
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||+....+... .....+||||||++.
T Consensus 68 ----------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~ 126 (320)
T 4aa9_A 68 ----------KPLSIHYGTGS-MEGFLGYDTVTVSNIVD--------PNQTVGLSTEQPGEVF--TYSEFDGILGLAYPS 126 (320)
T ss_dssp ----------EEEEEEETTEE-EEEEEEEEEEEETTEEE--------EEEEEEEEEECCSHHH--HSCCCSEEEECSCGG
T ss_pred ----------cEEEEEECCcE-EEEEEEEEEEEECCEee--------cCeEEEEEEEcccccc--cccCcccEEecCccc
Confidence 69999999998 89999999999988643 3899999998766321 335679999999864
Q ss_pred ------CcHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 228 ------SSMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 228 ------~s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
.+++++|+++|+| +++||+||.+...+|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+|+++.+..+
T Consensus 127 ~s~~~~~~~~~~l~~~g~i~~~~Fs~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~~~~ 205 (320)
T 4aa9_A 127 LASEYSVPVFDNMMDRHLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVT-LQQYWQFTVDSVTINGVAVACV 205 (320)
T ss_dssp GSCTTCCCHHHHHHHTTCSSSSEEEEECCSSSSCCEEEETCCCGGGEEEEEEEEECS-SBTTBEEEECEEEETTEEEEST
T ss_pred ccccCCCCHHHHHHhCCCCCCceEEEEeCCCCCCeEEEEcccCHHHccCceEEEEcc-cCCceEEEEeEEEECCEEeccC
Confidence 4699999999999 69999999985568999999999875 7899997 6789999999999999887532
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEEC
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (484)
....+++||||+++++|.+++++|++++++... ..+.+.++| .....+|+|+|+| +|.+++||
T Consensus 206 -------~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g~~~~~C-----~~~~~~p~i~f~f-~g~~~~l~ 268 (320)
T 4aa9_A 206 -------GGCQAILDTGTSVLFGPSSDILKIQMAIGATEN----RYGEFDVNC-----GNLRSMPTVVFEI-NGRDYPLS 268 (320)
T ss_dssp -------TCEEEEECTTCSSEEEEHHHHHHHHHHTTCEEC----TTSCEEECG-----GGGGGCCCEEEEE-TTEEEEEC
T ss_pred -------CCcEEEEECCCCcEECCHHHHHHHHHHhCCccc----CCCcEEEeC-----CCCCcCceEEEEE-CCEEEEEC
Confidence 346799999999999999999999999865532 112233455 4445789999999 89999999
Q ss_pred CCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 377 PHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 377 p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
|++|+.+ ++..|+ +|.... ..+.||||++|||++|+|||++++|||||+++
T Consensus 269 ~~~y~~~-~~~~C~~~i~~~~-----~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a~ 320 (320)
T 4aa9_A 269 PSAYTSK-DQGFCTSGFQGDN-----NSELWILGDVFIREYYSVFDRANNRVGLAKAI 320 (320)
T ss_dssp HHHHEEE-ETTEEEESEEEET-----TCCCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhccC-CCCeEEEEEEcCC-----CCCcEEEChHHhcceEEEEECCCCEEEEEecC
Confidence 9999987 456897 677633 23579999999999999999999999999974
No 11
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=100.00 E-value=6.8e-57 Score=452.47 Aligned_cols=308 Identities=22% Similarity=0.343 Sum_probs=257.9
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~---~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..|. .|..+ +.|||++|+|++...
T Consensus 14 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~-------~~y~~~~SsT~~~~~----------- 75 (361)
T 1mpp_A 14 DFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGK-------RFFDPSSSSTFKETD----------- 75 (361)
T ss_dssp ETTTTEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSS-------CCBCGGGCTTCEEEE-----------
T ss_pred cCCCCEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCC-------CcCCCccCCceEecC-----------
Confidence 456789999999999999999999999999999999997 67653 689999999999976
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccC-----CCCCCCCcccceee
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSG-----NLDSTNEEALDGII 221 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~-----~~~~~~~~~~~GIl 221 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||+....+ .+. .....+|||
T Consensus 76 -----------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v--------~~~~fg~~~~~~~~~~~~~~~--~~~~~~Gil 133 (361)
T 1mpp_A 76 -----------YNLNITYGTGG-ANGIYFRDSITVGGATV--------KQQTLAYVDNVSGPTAEQSPD--SELFLDGIF 133 (361)
T ss_dssp -----------EEEEEECSSCE-EEEEEEEEEEEETTEEE--------EEEEEEEEEEEESGGGSSCTT--CSSCCCEEE
T ss_pred -----------CeEEEEECCce-EEEEEEEEEEEECCEEE--------eceEEEEEEeccCcccccccc--ccCCCCCEE
Confidence 69999999999 89999999999987543 4899999998865 222 346789999
Q ss_pred ecCCCC------------CcHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCC---ceEE
Q 011500 222 GFGKSN------------SSMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQP---HYSI 281 (484)
Q Consensus 222 GLg~~~------------~s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~---~w~v 281 (484)
|||++. .+++++|++||+| +++||+||.+...+|.|+|||+|++ ++.|+|++.... +|.|
T Consensus 134 GLg~~~~s~~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~~~v 213 (361)
T 1mpp_A 134 GAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNTNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDA 213 (361)
T ss_dssp ECSCGGGSHHHHHHSCCCCCHHHHHHHTTSSSSSEEEEECCCSSSEEEEEESSCCGGGBSSCCEEEECEEETTEEEEEEE
T ss_pred EeCCcccccccccccccCCCHHHHHHHcCCCCCcEEEEEecCCCCCcEEEEecCChhhcCCceEEEEcccCCCceeEEEE
Confidence 999863 4688899999999 6999999998545899999999975 489999985444 8999
Q ss_pred EEeEEEEccEEeecCCcccccCCCCcEE-EccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCC
Q 011500 282 NMTAVQVGLDFLNLPTDVFGVGDNKGTI-IDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGF 360 (484)
Q Consensus 282 ~l~~i~v~~~~~~~~~~~~~~~~~~~ai-iDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~ 360 (484)
.+++|+|+++.+.. .....+| |||||+++++|.+++++|++++++.+. ...+.+.++|+. ...+
T Consensus 214 ~l~~i~v~~~~~~~-------~~~~~ai~iDSGTt~~~lP~~~~~~l~~~~~~~~~---~~~g~~~~~C~~-----~~~~ 278 (361)
T 1mpp_A 214 PVTGVKIDGSDAVS-------FDGAQAFTIDTGTNFFIAPSSFAEKVVKAALPDAT---ESQQGYTVPCSK-----YQDS 278 (361)
T ss_dssp EEEEEEETTEEEEE-------EEEEEEEEEETTCCSEEEEHHHHHHHHHHHCTTCE---EETTEEEEEHHH-----HTTC
T ss_pred EEeEEEECCeeecc-------CCCCEEEEECCCCCceeCCHHHHHHHHHHhCCccc---CCCCcEEEECCC-----cccC
Confidence 99999999987642 1246799 999999999999999999999976542 122233457753 3457
Q ss_pred -ceEEEEEC-C-----CcEEEECCCeeeEEc--CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEE
Q 011500 361 -PNVTFHFE-N-----SVSLKVYPHEYLFPF--EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWT 430 (484)
Q Consensus 361 -p~i~f~f~-g-----g~~~~l~p~~y~~~~--~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA 430 (484)
|+|+|+|+ + |.+++|||++|+++. ++..|+ +|.... .+.||||++|||++|+|||++++|||||
T Consensus 279 ~p~i~f~f~~g~~~~~g~~~~i~~~~y~~~~~~~~~~C~~~i~~~~------~~~~iLG~~fl~~~yvvfD~~~~~igfa 352 (361)
T 1mpp_A 279 KTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDG------GNQFIVGNLFLRFFVNVYDFGKNRIGFA 352 (361)
T ss_dssp CCEEEEEEECTTCSSCEEEEEEEGGGGEEECSSSSCEEEESEEEES------SSCCEEEHHHHTTEEEEEETTTTEEEEE
T ss_pred CCcEEEEEEcCCcCCCCeEEEECHHHhEEecCCCCCeeEEEEEeCC------CCCEEEChHHhccEEEEEECCCCEEEEE
Confidence 99999993 4 899999999999987 346897 787652 4679999999999999999999999999
Q ss_pred eCCCCCCc
Q 011500 431 EYNCSSSI 438 (484)
Q Consensus 431 ~~~c~~~~ 438 (484)
+++|+..+
T Consensus 353 ~~~~~~~~ 360 (361)
T 1mpp_A 353 PLASGYEN 360 (361)
T ss_dssp EBCTTTCC
T ss_pred EcccCCCC
Confidence 99998653
No 12
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=100.00 E-value=3.1e-57 Score=447.93 Aligned_cols=300 Identities=22% Similarity=0.363 Sum_probs=251.0
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCC--CCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQC--KECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c--~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..| ..|.. ++.|||++|+|++...
T Consensus 10 n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------ 70 (323)
T 3cms_A 10 NYLDSQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKN-------HQRFDPRKSSTFQNLG------------ 70 (323)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT-------SCCBCGGGCTTCEEEE------------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccC-------CCCCCCccCCCeEECC------------
Confidence 45678999999999999999999999999999999998 35654 3689999999999976
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||+....+... .....+||||||++.
T Consensus 71 ----------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~ 129 (323)
T 3cms_A 71 ----------KPLSIHYGTGS-MQGILGYDTVTVSNIVD--------IQQTVGLSTQEPGDFF--TYAEFDGILGMAYPS 129 (323)
T ss_dssp ----------EEEEEEETTEE-EEEEEEEEEEEETTEEE--------EEEEEEEEEECCSHHH--HHSSCSEEEECSCGG
T ss_pred ----------cEEEEEeCCCC-eEEEEEEEEEEECCeEE--------eccEEEEEEecccccc--cccCCceEEecCcch
Confidence 69999999998 89999999999987543 3899999998755211 234679999999975
Q ss_pred C------cHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 228 S------SMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 228 ~------s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
. +++++|++||.| +++||+||.+....|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+|+++.+..+
T Consensus 130 ~s~~~~~~~~~~l~~q~~i~~~~FS~~l~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~~ 208 (323)
T 3cms_A 130 LASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVT-VQQYWQFTVDSVTISGVVVACE 208 (323)
T ss_dssp GSCTTCCCHHHHHHHTTCSSSSEEEEECCTTSSCEEEEESCCCGGGEEEEEEEEECS-SBTTBEEEEEEEEETTEEEEST
T ss_pred hhccCCCCHHHHHHHCCCCCCCEEEEEECCCCCCEEEEECCCChhhccCceEEEECc-cCCeEEEEEeeEEECCEEeecC
Confidence 3 689999999999 69999999986445999999999864 7899998 5689999999999999887532
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEEC
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (484)
....+++||||+++++|.+++++|.+++++... ....+.++| ...+.+|+|+|+| +|++++||
T Consensus 209 -------~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~----~~g~~~~~C-----~~~~~~P~i~f~f-~g~~~~i~ 271 (323)
T 3cms_A 209 -------GGCQAILDTGTSKLVGPSSDILNIQQAIGATQN----QYGEFDIDC-----DNLSYMPTVVFEI-NGKMYPLT 271 (323)
T ss_dssp -------TCEEEEECTTCCSEEECHHHHHHHHHHHTCEEE----TTTEEEECT-----TCTTTSCCEEEEE-TTEEEEEC
T ss_pred -------CCcEEEEecCCccEeCCHHHHHHHHHHhCCeec----CCCcEEEEC-----CCCccCceEEEEE-CCEEEEEC
Confidence 356799999999999999999999999865421 112223456 4445789999999 89999999
Q ss_pred CCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 377 PHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 377 p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
|++|+++ ++..|+ +|+..+ ..+.||||++|||++|+|||++|+|||||+++
T Consensus 272 ~~~y~~~-~~~~C~~~i~~~~-----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 323 (323)
T 3cms_A 272 PSAYTSQ-DQGFCTSGFQSEN-----HSQKWILGDVFIREYYSVFDRANNLVGLAKAI 323 (323)
T ss_dssp HHHHEEE-ETTEEEESEEEC--------CCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred HHHhccC-CCCEEEEEEEeCC-----CCCcEEECHHHhhceEEEEECCCCEEEEEECC
Confidence 9999998 566897 677653 24679999999999999999999999999864
No 13
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=100.00 E-value=7.1e-57 Score=448.71 Aligned_cols=301 Identities=23% Similarity=0.350 Sum_probs=252.0
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCC-----CCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI-----QCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~-----~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
.++.|+++|+||||||++.|+|||||+++||++. .|..|.. ++.|||++|+||+...
T Consensus 10 ~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~~----------- 71 (339)
T 3fv3_A 10 EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKS-------SGTFTPSSSSSYKNLG----------- 71 (339)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTT-------TCCBCGGGCTTCEEEE-----------
T ss_pred CCCEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCC-------CCcCCCccCcceeeCC-----------
Confidence 4578999999999999999999999999999954 3445543 4699999999999976
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+....+ .+||||||++
T Consensus 72 -----------~~~~i~Yg~gs~~~G~~~~D~v~~g~~~v--------~~~~fg~~~~~~~---------~~GilGLg~~ 123 (339)
T 3fv3_A 72 -----------AAFTIRYGDGSTSQGTWGKDTVTINGVSI--------TGQQIADVTQTSV---------DQGILGIGYT 123 (339)
T ss_dssp -----------EEEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEESS---------SSCEEECSCG
T ss_pred -----------ceEEEEECCCceEEEEEEEEEEEECCEEE--------CceEEEEEEecCC---------CceeEEecCc
Confidence 69999999998899999999999998653 3899999998653 5899999997
Q ss_pred CC----------------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEe
Q 011500 227 NS----------------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMT 284 (484)
Q Consensus 227 ~~----------------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~ 284 (484)
.. +++++|++||+| +++||+||.+. ...|.|+|||+|+++ +.|+|+. .+.+|.|.++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~L~~~g~i~~~~fsl~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~ 202 (339)
T 3fv3_A 124 SNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVT-SSQALTISLA 202 (339)
T ss_dssp GGCCCBCTTSCBCSCCCCCHHHHHHHTTSCSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEEBC-CSSSCEEEEE
T ss_pred cccccccccccccCccCCcHHHHHHHCCCCCCceEEEEECCCCCCCeEEEEeeechHHeecceEEEecc-cCccEEEEEE
Confidence 53 389999999999 69999999875 458999999999764 8899998 5669999999
Q ss_pred EEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEE
Q 011500 285 AVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVT 364 (484)
Q Consensus 285 ~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~ 364 (484)
+|.|+++.+.. ...+++||||+++++|++++++|++++++.+.........+.++|+ . ..+|+|+
T Consensus 203 ~i~v~g~~~~~---------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C~-----~-~~~p~i~ 267 (339)
T 3fv3_A 203 SVNLKGSSFSF---------GDGALLDSGTTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCN-----T-DTSGTTV 267 (339)
T ss_dssp EEEESSCEEEE---------EEEEEECTTBSSEEECHHHHHHHHHHHTCEEEEEETTEEEEEECTT-----C-CCCSEEE
T ss_pred EEEECCEeecC---------CccEEEeCCCCCEecCHHHHHHHHHHcCCEEccccccCceEEEecC-----C-CCCCcEE
Confidence 99999987753 2569999999999999999999999998664211011223345664 2 4589999
Q ss_pred EEECCCcEEEECCCeeeEEcCCeEE-EEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCcccee
Q 011500 365 FHFENSVSLKVYPHEYLFPFEDLWC-IGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRD 442 (484)
Q Consensus 365 f~f~gg~~~~l~p~~y~~~~~~~~C-~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~~~~~ 442 (484)
|+|.+|.+++||+++|+++.++..| ++|.. . +.||||++|||++|+|||++++|||||+++|++..+++.
T Consensus 268 f~f~~g~~~~v~~~~~~~~~~~~~C~~~i~~-~-------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~~s~i~~ 338 (339)
T 3fv3_A 268 FNFGNGAKITVPNTEYVYQNGDGTCLWGIQP-S-------DDTILGDNFLRHAYLLYNLDANTISIAQVKYTTDSSISA 338 (339)
T ss_dssp EEETTSCEEEEEGGGGEEECSSSCEEESEEE-C-------SSCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCCEEE
T ss_pred EEECCCCEEEECHHHheeeCCCCeEEEEEEe-C-------CcEEeChHHHhCEEEEEECCCCEEEEEecCCCCccceEE
Confidence 9995589999999999998755678 57776 2 469999999999999999999999999999997766653
No 14
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=100.00 E-value=8e-57 Score=448.99 Aligned_cols=307 Identities=23% Similarity=0.369 Sum_probs=252.9
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCC--CCCCCCc--CCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ--CKECPRR--SSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~--c~~C~~~--~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
.++.|+++|+||||||++.|++||||+++||++.. |..|... ...|..++.|||++|+|++...
T Consensus 10 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~------------ 77 (342)
T 3pvk_A 10 EQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLN------------ 77 (342)
T ss_dssp CSSSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEE------------
T ss_pred CCcEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecC------------
Confidence 46789999999999999999999999999999875 7655432 2345567899999999999976
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+.... ..+||||||++.
T Consensus 78 ----------~~~~i~Yg~gs~~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~---------~~~GilGLg~~~ 130 (342)
T 3pvk_A 78 ----------TPFKIGYGDGSSSQGTLYKDTVGFGGVSI--------KNQVLADVDSTS---------IDQGILGVGYKT 130 (342)
T ss_dssp ----------EEEEEECSSSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEES---------SSSCEEECSCGG
T ss_pred ----------CeEEEEecCCCeEEEEEEEEEEEECCEEe--------cceEEEEEEccC---------CCccEEEecCcc
Confidence 69999999999899999999999998643 389999998764 368999999976
Q ss_pred -------CcHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEee
Q 011500 228 -------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLN 294 (484)
Q Consensus 228 -------~s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~ 294 (484)
.+++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|.+++|.|+++.+.
T Consensus 131 ~~~~~~~~~~~~~L~~qg~i~~~~fs~~l~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g~~~~ 209 (342)
T 3pvk_A 131 NEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVT-SDRELRISLGSVEVSGKTIN 209 (342)
T ss_dssp GCSSCSSCCHHHHHHHTTSSSSSEEEEECCCTTCSEEEEEETEEETTSBSSCCEEEECC-CSSSCEEEEEEEEETTEEEE
T ss_pred ccccccCCcHHHHHHhcCCCCCceEEEEeCCCCCCCcEEEECccCccceeeeeEEeecC-ccceEEEEEeEEEECCEEec
Confidence 4799999999999 69999999875 457999999999864 8899998 45699999999999999875
Q ss_pred cCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEE
Q 011500 295 LPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLK 374 (484)
Q Consensus 295 ~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~ 374 (484)
.+ +..+++||||+++++|++++++|++++++...........+.++| . ..|+|+|+|++|.+++
T Consensus 210 ~~--------~~~~iiDSGtt~~~lP~~~~~~i~~~~~~~~~~~~~~~~~~~~~C-----~---~~p~i~f~f~~g~~~~ 273 (342)
T 3pvk_A 210 TD--------NVDVLLDSGTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC-----N---LSGDVVFNFSKNAKIS 273 (342)
T ss_dssp EE--------EEEEEECTTCSSEEECHHHHHHHHHHTTCEEEECTTSCEEEEECS-----C---CCSEEEEEESTTCEEE
T ss_pred CC--------CceEEEeCCCCCeecCHHHHHHHHHHcCCeecccCCCceEEEEec-----C---CCCceEEEECCCCEEE
Confidence 32 356999999999999999999999999766421110111133456 2 3599999995589999
Q ss_pred ECCCeeeEEc---CC---eEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCCCcccee
Q 011500 375 VYPHEYLFPF---ED---LWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSSSIKVRD 442 (484)
Q Consensus 375 l~p~~y~~~~---~~---~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~~~~~~~ 442 (484)
||+++|+++. .+ ..|+ ++... +.||||++|||++|+|||++++|||||+++|++..+++.
T Consensus 274 vp~~~~~~~~~~~~g~~~~~C~~~i~~~--------~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~~~s~iv~ 340 (342)
T 3pvk_A 274 VPASEFAASLQGDDGQPYDKCQLLFDVN--------DANILGDNFLRSAYIVYDLDDNEISLAQVKYTSASSISA 340 (342)
T ss_dssp EEGGGGEEC----------CEEESEEEC--------TTCEECHHHHTTEEEEEETTTTEEEEEEBCCCSCCCEEE
T ss_pred EcHHHheeeccccCCCcCCeeEEEEeeC--------CCeEeCHHHHhcEEEEEECCCCEEEEEecCCCCCCCEEE
Confidence 9999999873 22 6796 55552 469999999999999999999999999999997666654
No 15
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A
Probab=100.00 E-value=2.2e-56 Score=443.20 Aligned_cols=304 Identities=24% Similarity=0.438 Sum_probs=253.2
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCC--CCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKE--CPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGP 148 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~--C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~ 148 (484)
+.++.|+++|+||||||++.|+|||||+++||+|..|.. |.. ++.|||++|+|++...
T Consensus 9 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------- 68 (329)
T 1htr_B 9 YMDAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTS-------HSRFNPSESSTYSTNG------------- 68 (329)
T ss_dssp GTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHT-------SCCBCGGGCTTCEEEE-------------
T ss_pred EcCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCC-------CCcCCCccCCCeEECC-------------
Confidence 467899999999999999999999999999999999863 654 3699999999999866
Q ss_pred CCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC
Q 011500 149 LTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS 228 (484)
Q Consensus 149 ~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~ 228 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ .++.|||+....+.+. .....+||||||++..
T Consensus 69 ---------~~~~i~Yg~gs-~~G~~~~D~v~~g~~~~--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~ 128 (329)
T 1htr_B 69 ---------QTFSLQYGSGS-LTGFFGYDTLTVQSIQV--------PNQEFGLSENEPGTNF--VYAQFDGIMGLAYPAL 128 (329)
T ss_dssp ---------EEEEEEETTEE-EEEEEEEEEEEETTEEE--------EEEEEEEESSCSSGGG--GGCSCCEEEECCCCSC
T ss_pred ---------cEEEEEeCCCC-eEEEEEeeeEEEcceEE--------CceEEEEEEEcccccc--ccCCCceEEecCCCcc
Confidence 69999999998 69999999999987543 3899999998765422 3456899999999764
Q ss_pred ------cHHHHHHhcCCC-CcceeeeecCCC-C-cceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeec
Q 011500 229 ------SMISQLASSGGV-RKMFAHCLDGIN-G-GGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNL 295 (484)
Q Consensus 229 ------s~~~~L~~~g~i-~~~FSl~l~~~~-~-~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~ 295 (484)
+++++|++||+| +++||+||.+.. . +|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+|+++.+..
T Consensus 129 s~~~~~~~~~~l~~qg~i~~~~Fs~~L~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~ 207 (329)
T 1htr_B 129 SVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVT-QELYWQIGIEEFLIGGQASGW 207 (329)
T ss_dssp CCTTCCSHHHHHHHTTCSSSSEEEEEECSSCSSEEEEEEESSCCGGGEEEEEEEEEBC-SSSSCEEEECEEEETTEECCT
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEcCCCCCCCcEEEEcccCHHHcCCceEEEECC-CCceEEEEEeEEEECCceeee
Confidence 589999999999 699999999852 2 7999999999764 7899998 578999999999999987531
Q ss_pred CCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEE
Q 011500 296 PTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKV 375 (484)
Q Consensus 296 ~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l 375 (484)
......+++||||+++++|++++++|.+++++.... .+.+.++|+ ..+.+|+|+|+| +|++++|
T Consensus 208 ------~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~~~~----~g~~~~~C~-----~~~~~P~i~f~f-~g~~~~i 271 (329)
T 1htr_B 208 ------CSEGCQAIVDTGTSLLTVPQQYMSALLQATGAQEDE----YGQFLVNCN-----SIQNLPSLTFII-NGVEFPL 271 (329)
T ss_dssp ------TTTCEEEEECTTCCSEEEEGGGHHHHHHHHTCEECT----TSCEEECGG-----GGGGSCCEEEEE-TTEEEEE
T ss_pred ------cCCCceEEEecCCccEECCHHHHHHHHHHhCCeecC----CCeEEEeCC-----CcccCCcEEEEE-CCEEEEE
Confidence 123567999999999999999999999999765421 122345674 334689999999 8999999
Q ss_pred CCCeeeEEcCCeEEE-EEeccCcccCCCCC-eeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 376 YPHEYLFPFEDLWCI-GWQNSGMQSRDRKN-MTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 376 ~p~~y~~~~~~~~C~-~i~~~~~~~~~~~~-~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
||++|+++..+ .|+ +|...+.+.. ..+ .||||++|||++|+|||++++|||||+++
T Consensus 272 ~~~~y~~~~~g-~C~~~~~~~~~~~~-~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~~ 329 (329)
T 1htr_B 272 PPSSYILSNNG-YCTVGVEPTYLSSQ-NGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 329 (329)
T ss_dssp CHHHHEEECSS-CEEESEEEECCCCT-TSSCEEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred CHHHhcccCCC-EEEEEEEECCCCCC-CCCceEEEChHHhccEEEEEECCCCEEEEEeCC
Confidence 99999998764 897 7876543211 134 89999999999999999999999999864
No 16
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=100.00 E-value=1.4e-56 Score=444.29 Aligned_cols=300 Identities=26% Similarity=0.393 Sum_probs=246.4
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
..++.|+++|+||||||++.|+|||||+++||+|..|..|.. ..++.|||++|+|++.++|
T Consensus 12 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~-----~~~~~y~~~~SsT~~~~~~-------------- 72 (329)
T 3c9x_A 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETPKSSA-----TGHAIYTPSKSSTSKKVSG-------------- 72 (329)
T ss_dssp TTCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCHHHH-----TTSCCBCGGGCTTCEECTT--------------
T ss_pred CCCCEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCCcccc-----CCCCcCCcccCcCceEcCC--------------
Confidence 467889999999999999999999999999999999987642 2247999999999998652
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC--
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 228 (484)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+...++.+. .....+||||||++..
T Consensus 73 -------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~ 135 (329)
T 3c9x_A 73 -------ASWSISYGDGSSSSGDVYTDKVTIGGFSV--------NTQGVESATRVSTEFV--QDTVISGLVGLAFDSGNQ 135 (329)
T ss_dssp -------CBEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--HCTTCCEEEECSCGGGCC
T ss_pred -------CeEEEEeCCCCcEEEEEEEEEEEECCEEE--------cceEEEEEEecCcccc--ccCCCceeEEeCcccccc
Confidence 79999999999889999999999987543 3899999998765442 2246899999999643
Q ss_pred -------cHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 229 -------SMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 229 -------s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
+++++|+++ + +++||+||.+ +.+|.|+|||+|++ ++.|+|+...+.+|.|.+++|+|+++.+.
T Consensus 136 ~~~~~~~~~~~~l~~~--i~~~~FS~~l~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~-- 210 (329)
T 3c9x_A 136 VRPHPQKTWFSNAASS--LAEPLFTADLRH-GQNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLN-- 210 (329)
T ss_dssp CBSSCCCCHHHHHHTT--SSSSEEEEECCS-SSCEEEEESSCCGGGCSSCEEEEECBCTTSSCEEEECCEEETTCCCC--
T ss_pred cCCCCCCCHHHHHHHh--cCCCEEEEEecC-CCCcEEEEeCcChhhcccceEEEEccCCCceEEEEEeeEEECCEecc--
Confidence 589999986 6 7999999987 56899999999965 48899998667899999999999998652
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEEC
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVY 376 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~ 376 (484)
.....+|+||||+++++|++++++|++++.+... ......+.++|+ ..+|+|+|+| +|++++||
T Consensus 211 ------~~~~~aiiDSGTt~~~lp~~~~~~i~~~i~~a~~--~~~~~~~~~~C~-------~~~P~i~f~f-~g~~~~ip 274 (329)
T 3c9x_A 211 ------RNSIDGIADTGTTLLLLDDNVVDAYYANVQSAQY--DNQQEGVVFDCD-------EDLPSFSFGV-GSSTITIP 274 (329)
T ss_dssp ------SCCEEEEECTTCCSEEECHHHHHHHHTTCTTCEE--ETTTTEEEEETT-------CCCCCEEEEE-TTEEEEEC
T ss_pred ------CCCceEEEECCCCcEeCCHHHHHHHHHhCCCcEE--cCCCCEEEEECC-------CCCCcEEEEE-CCEEEEEC
Confidence 2356799999999999999999999988743211 111122335674 4689999999 89999999
Q ss_pred CCeeeEEc-C--CeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 377 PHEYLFPF-E--DLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 377 p~~y~~~~-~--~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
+++|++.. + ...|++ |.... +.+.||||++|||++|+|||++|+|||||+.
T Consensus 275 ~~~~~~~~~~~~~~~C~~~i~~~~-----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~ 329 (329)
T 3c9x_A 275 GDLLNLTPLEEGSSTCFGGLQSSS-----GIGINIFGDVALKAALVVFDLGNERLGWAQK 329 (329)
T ss_dssp GGGGEEEESSTTCSEEEESEEECT-----TTTSEEECHHHHTTEEEEEETTTTEEEEEEC
T ss_pred HHHeeeeccCCCCCeEEEEEEcCC-----CCCcEEEChHHhccEEEEEECCCCEEeEecC
Confidence 99999875 2 378984 66543 2467999999999999999999999999974
No 17
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Probab=100.00 E-value=1.7e-56 Score=443.60 Aligned_cols=298 Identities=22% Similarity=0.366 Sum_probs=245.5
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.++.|+++|+||||||++.|+|||||+++||+|.+|..|.. .++.|||++|+|++.++|
T Consensus 13 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~------~~~~y~~~~SsT~~~~~~--------------- 71 (329)
T 1oew_A 13 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEV------XQTIYTPSKSTTAKLLSG--------------- 71 (329)
T ss_dssp TCCCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSCGGGC-------CCCBCGGGCTTCEEEEE---------------
T ss_pred CCCEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCCcccc------ccCccCCccCccceecCC---------------
Confidence 57789999999999999999999999999999999987642 247999999999999752
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS--- 228 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 228 (484)
|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+...++.+. .....+||||||++..
T Consensus 72 ------~~~~i~Yg~Gs~~~G~~~~D~v~~g~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~ 135 (329)
T 1oew_A 72 ------ATWSISYGDGSSSSGDVYTDTVSVGGLTV--------TGQAVESAKKVSSSFT--EDSTIDGLLGLAFSTLNTV 135 (329)
T ss_dssp ------EEEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--HCTTCCEEEECSCGGGCCC
T ss_pred ------CeEEEEeCCCCcEEEEEEEEEEEECCEEE--------eeeEEEEEEecCcccc--ccCCCceEEEecccccccc
Confidence 79999999999889999999999987543 4899999998765442 2246899999999643
Q ss_pred ------cHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 229 ------SMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 229 ------s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
+++++|+++ + +++||+||.+ +.+|.|+|||+|++ ++.|+|+...+.+|.|.+++|+|+++.+.
T Consensus 136 ~~~~~~~~~~~l~~~--i~~~~FS~~L~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~v~l~~i~v~~~~~~--- 209 (329)
T 1oew_A 136 SPTQQKTFFDNAKAS--LDSPVFTADLGY-HAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFK--- 209 (329)
T ss_dssp BSSCCCCHHHHHTTT--SSSSEEEEECCS-SSCEEEEESCCCTTSSSSCCEEEECBCTTSSCEEEEEEEEETTSCCE---
T ss_pred CcCCCCCHHHHHHHh--ccCcEEEEEccC-CCCeEEEEeccChHhcccceEEEEccCCCceEEEEEeeEEECCeecc---
Confidence 588999886 6 7999999987 57899999999976 48899998667899999999999997653
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.....+|+||||+++++|++++++|++++.+... ......+.++|+ ..+|+|+|+| +|++++||+
T Consensus 210 -----~~~~~aiiDSGTt~~~lP~~~~~~l~~~i~~a~~--~~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~ip~ 274 (329)
T 1oew_A 210 -----STSIDGIADTGTTLLYLPATVVSAYWAQVSGAKS--SSSVGGYVFPCS-------ATLPSFTFGV-GSARIVIPG 274 (329)
T ss_dssp -----EEEEEEEECTTCCSEEECHHHHHHHHTTSTTCEE--ETTTTEEEEETT-------CCCCCEEEEE-TTEEEEECH
T ss_pred -----CCCceEEEeCCCCCEECCHHHHHHHHHhCCCcEE--cCCCCEEEEECC-------CCCCcEEEEE-CCEEEEECH
Confidence 1245799999999999999999999988743211 011122335674 4689999999 999999999
Q ss_pred CeeeEEc---CCeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeC-CCCEEEEEeC
Q 011500 378 HEYLFPF---EDLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDL-ENQVIGWTEY 432 (484)
Q Consensus 378 ~~y~~~~---~~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~-~~~rIGfA~~ 432 (484)
++|+++. +...|++ |.... +.+.||||++|||++|+|||+ +|+|||||+.
T Consensus 275 ~~~~~~~~~~~~~~C~~~i~~~~-----~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~~ 329 (329)
T 1oew_A 275 DYIDFGPISTGSSSCFGGIQSSA-----GIGINIFGDVALKAAFVVFNGATTPTLGFASK 329 (329)
T ss_dssp HHHEEEESSTTCSEEEESEEEST-----TTSSEEECHHHHTTEEEEEECSSSCEEEEEEC
T ss_pred HHeeeeecCCCCCeEEEEEEeCC-----CCCceEEChHHhcCEEEEEECCCCceEEEecC
Confidence 9999875 2468974 66543 246799999999999999999 9999999974
No 18
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=100.00 E-value=2.1e-56 Score=445.77 Aligned_cols=307 Identities=21% Similarity=0.342 Sum_probs=254.2
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+..|+++|+||||||++.|++||||+++||+|..|..|.. .|..++.|||++|+|++...
T Consensus 14 n~~d~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~---~C~~~~~y~~~~SsT~~~~~-------------- 76 (341)
T 3k1w_A 14 NYMDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYT---ACVYHKLFDASDSSSYKHNG-------------- 76 (341)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCH---HHHTSCCBCGGGCTTCEEEE--------------
T ss_pred EccCCEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCC---cccCCCCCCCCcCcCeeECC--------------
Confidence 4568899999999999999999999999999999999873211 12234699999999999865
Q ss_pred CCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC-
Q 011500 150 TDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS- 228 (484)
Q Consensus 150 ~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~- 228 (484)
|.|.+.|++|+ +.|.+++|+|+|++.. + ++.|||+....+... .....+||||||++..
T Consensus 77 --------~~~~i~Yg~gs-~~G~~~~D~v~ig~~~--------v-~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s 136 (341)
T 3k1w_A 77 --------TELTLRYSTGT-VSGFLSQDIITVGGIT--------V-TQMFGEVTEMPALPF--MLAEFDGVVGMGFIEQA 136 (341)
T ss_dssp --------EEEEEEETTEE-EEEEEEEEEEEETTEE--------E-EEEEEEEEECCHHHH--TTCSSSEEEECSCGGGC
T ss_pred --------CEEEEEECCcE-EEEEEEEEEEEECCce--------e-eEEEEEEEEcccccc--ccCCcceEEECCchhhc
Confidence 79999999998 8999999999998753 3 699999998765411 3456899999999764
Q ss_pred -----cHHHHHHhcCCC-CcceeeeecCCC-----CcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEe
Q 011500 229 -----SMISQLASSGGV-RKMFAHCLDGIN-----GGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFL 293 (484)
Q Consensus 229 -----s~~~~L~~~g~i-~~~FSl~l~~~~-----~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~ 293 (484)
+++++|++||+| +++||+||.+.. .+|.|+|||+|+++ ++|+|+. .+.+|.|.+++|+|+++.+
T Consensus 137 ~~~~~~~~~~l~~qg~i~~~~Fs~~l~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~ 215 (341)
T 3k1w_A 137 IGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLI-KTGVWQIQMKGVSVGSSTL 215 (341)
T ss_dssp GGGCCCHHHHHHHHTCBSSSEEEEEECCCC-----CCEEEEESSCCGGGEEEEEEEEECS-STTSCEEEECCEEETTEEE
T ss_pred ccCCCCHHHHHHHCCCCCCCEEEEEEeCCCCcCCCCCCEEEECccChHHccCceEEEecC-CCCEEEEEEeEEEECCEEe
Confidence 589999999999 699999999752 37999999999875 7899998 6789999999999999875
Q ss_pred ecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEE
Q 011500 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSL 373 (484)
Q Consensus 294 ~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~ 373 (484)
.. .....+++||||+++++|.+++++|++++++.... .+ +.++| .....+|+|+|+| +|.++
T Consensus 216 ~~-------~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~----~g-~~~~C-----~~~~~~p~i~f~f-~g~~~ 277 (341)
T 3k1w_A 216 LC-------EDGCLALVDTGASYISGSTSSIEKLMEALGAKKRL----FD-YVVKC-----NEGPTLPDISFHL-GGKEY 277 (341)
T ss_dssp EC-------TTCEEEEECTTCSSEEECHHHHHHHHHHHTCEECS----SC-EEEEG-----GGGGGCCCEEEEE-TTEEE
T ss_pred ec-------CCCCEEEEECCCChhcCCHHHHHHHHHHcCCeecC----CC-eEEeC-----CCCCcCCcEEEEE-CCEEE
Confidence 32 23467999999999999999999999999765421 11 33455 4445689999999 89999
Q ss_pred EECCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 374 KVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 374 ~l~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+|||++|+++. ++..|+ +|...+.+. ...+.||||++|||++|+|||++++|||||+++
T Consensus 278 ~l~~~~~~~~~~~~~~~~C~~~i~~~~~~~-~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a~ 340 (341)
T 3k1w_A 278 TLTSADYVFQESYSSKKLCTLAIHAMDIPP-PTGPTWALGATFIRKFYTEFDRRNNRIGFALAR 340 (341)
T ss_dssp EECHHHHBCCSCCCTTSEEEBSEEECCCCT-TTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EECHHHheeEccCCCCCeEEeEEEecccCC-CCCCeEEEChHHhcceEEEEeCCCCEEEEEECC
Confidence 99999999876 367897 677643221 124679999999999999999999999999976
No 19
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=100.00 E-value=9.1e-56 Score=456.95 Aligned_cols=314 Identities=24% Similarity=0.382 Sum_probs=250.5
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~---~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+||+...
T Consensus 48 n~~~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~~----------- 109 (478)
T 1qdm_A 48 NYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYL-------HSRYKAGASSTYKKNG----------- 109 (478)
T ss_dssp CGGGCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGG-------SCCBCGGGCTTCBCCC-----------
T ss_pred eccCCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccC-------CCCCCcccCCCeeeCC-----------
Confidence 356789999999999999999999999999999999885 4544 4699999999999844
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
+.|.+.|++|+ +.|.+++|+|+|++..+ +++.||++....+..+ ....+|||||||++
T Consensus 110 -----------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v--------~~~~Fg~a~~~~~~~f--~~~~~dGIlGLg~~ 167 (478)
T 1qdm_A 110 -----------KPAAIQYGTGS-IAGYFSEDSVTVGDLVV--------KDQEFIEATKEPGITF--LVAKFDGILGLGFK 167 (478)
T ss_dssp -----------CEEEEEETTEE-EEEEEEEEEEEETTEEE--------EEEEEEEEEECCBSHH--HHCSSSEEEECSCG
T ss_pred -----------cEEEEEcCCCC-eEEEEEEEEEEECCeEE--------CCEEEEEEEecCCccc--ccccccceeccccc
Confidence 79999999998 89999999999987643 3799999998655321 23467999999997
Q ss_pred CC------cHHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEE
Q 011500 227 NS------SMISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDF 292 (484)
Q Consensus 227 ~~------s~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~ 292 (484)
.. +++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|+|.+++|.||++.
T Consensus 168 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~G~l~~~pv~-~~~~w~v~l~~i~v~g~~ 246 (478)
T 1qdm_A 168 EISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEGEGGEIIFGGMDPKHYVGEHTYVPVT-QKGYWQFDMGDVLVGGKS 246 (478)
T ss_dssp GGCGGGCCCHHHHHTTTTCCSSSEEEEECCCC-----CEEEEETCCCTTSEEEEEEEEEEE-EETTEEEEECCEEETTEE
T ss_pred ccccCCCCcHHHHHHHCCCCCCCEEEEEeecCCCCCCCeEEEeCCcCHhhcCCCceEEecc-CCCeEEEEEeEEEECCEE
Confidence 65 478999999999 69999999874 357999999999875 7899997 578999999999999988
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCC----------------------CCccc---------
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP----------------------DLKVH--------- 341 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~----------------------~~~~~--------- 341 (484)
+.++ ..+..+|+||||+++++|.+++++|.+++++... .....
T Consensus 247 ~~~~------~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~s~~Ck~~v~~yg~~ii~~l~~~~~p~~vC~~iglC 320 (478)
T 1qdm_A 247 TGFC------AGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQQILDLLLAETQPKKICSQVGLC 320 (478)
T ss_dssp CSTT------TTCEEEEECSSCCSEEECHHHHHHHHHHHTCCCBCCHHHHHHHHHTHHHHHHHHHTTCCHHHHHHHTTCC
T ss_pred Eeec------CCCceEEEcCCCCceeCCHHHHHHHHHHhCccccccccccchhhhhhhHHHHhhhhccChhhhhcccccc
Confidence 7543 2357799999999999999999999998865310 00000
Q ss_pred ------------------------ccCC-------------------------------CCcee---------ccCCCcc
Q 011500 342 ------------------------TVHD-------------------------------EYTCF---------QYSESVD 357 (484)
Q Consensus 342 ------------------------~~~~-------------------------------~~~C~---------~~~~~~~ 357 (484)
.... ...|+ .++|+..
T Consensus 321 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~C~~Ce~~v~~~~~~l~~n~t~~~I~~~~~~~C~~~~~~~g~~~v~C~~~ 400 (478)
T 1qdm_A 321 TFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSL 400 (478)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCBCCSSSCCEECGGGG
T ss_pred ccCccccccccccccccccccccccccccccchHHHHHHHHHHHHHhccccHHHHHHHHHHHhhccCCCCCeEEeecccc
Confidence 0000 00121 2233444
Q ss_pred CCCceEEEEECCCcEEEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 358 EGFPNVTFHFENSVSLKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 358 ~~~p~i~f~f~gg~~~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
..+|+|+|+| +|+.|+|+|++|+++.+ ...|+ +|...+.+.. ..+.||||+.|||++|+|||++|+|||||++
T Consensus 401 ~~lP~i~f~~-gg~~~~l~p~~yi~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ILGd~fl~~~y~vfD~~~~rIGfA~a 477 (478)
T 1qdm_A 401 GSMPDIEFTI-GGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPP-RGPLWILGDVFMGPYHTVFDYGKLRIGFAKA 477 (478)
T ss_dssp TTCCCEEEEE-TTEEEEECHHHHEEECSCGGGCCEEESEEECCCCTT-SCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccccEEEEE-CCEEEEEChHHhEEEccCCCCCeEEEEEEeccCCCC-CCCcEEECHHHhccEEEEEECCCCEEEEEeC
Confidence 6799999999 89999999999999873 35897 5776543222 2468999999999999999999999999986
No 20
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=100.00 E-value=2.9e-55 Score=446.56 Aligned_cols=346 Identities=22% Similarity=0.383 Sum_probs=260.9
Q ss_pred CCCCCCCCCcCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcc
Q 011500 61 DLPLGGSSRPDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEF 140 (484)
Q Consensus 61 ~~p~~~~~~~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~ 140 (484)
..|+.. ++.+++|+++|+||||||++.|+|||||+++||+|.+| .+|+|++.++|.++.
T Consensus 11 ~~pl~~---~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~------------------~~Sst~~~~~C~s~~ 69 (403)
T 3aup_A 11 VLPVQN---DGSTGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ------------------YSSKTYQAPFCHSTQ 69 (403)
T ss_dssp EEEEEE---CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECSSC------------------CCCSSCBCCCTTBHH
T ss_pred EEeeec---CCCCceEEEEEECCCCCceeEEEEECCCCceeECCCCC------------------CCCCCCCccCCCCcc
Confidence 456542 34678999999999999999999999999999998653 368899999999988
Q ss_pred cCCCCCC--------CCCCCCCCCCCceeEEeC-CCCcEeEEEEEEEEEEecccCCcc---ccccCcceEEeeeeeccCC
Q 011500 141 CHGVYGG--------PLTDCTANTSCPYLEIYG-DGSSTTGYFVQDVVQYDKVSGDLQ---TTSTNGSLIFGCGARQSGN 208 (484)
Q Consensus 141 C~~~~~~--------~~~~c~~~~~~~~~~~Y~-~gs~~~G~~~~D~v~ig~~~~~~~---~~~~~~~~~fg~~~~~~~~ 208 (484)
|...+.. ..+.|. ++.|.|.+.|+ +|+.+.|.+++|+|+|++..+..+ ....++++.|||+......
T Consensus 70 C~~~~~~~c~~c~~~~~s~~~-~~~~~~~~~Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~ 148 (403)
T 3aup_A 70 CSRANTHQCLSCPAASRPGCH-KNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQ 148 (403)
T ss_dssp HHHTTCCCEEECSSSCBTTBC-SSEEEEEEEETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGS
T ss_pred ccCccccCccccCCCCCCCCC-CCcceeEeecCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccc
Confidence 9765432 123454 35799999998 788899999999999988432210 0123558999999987543
Q ss_pred CCCCCCcccceeeecCCCCCcHHHHHHhcCCCCcceeeeecCC-CCcceEEeCCcCC-------C-----CceEeeCCCC
Q 011500 209 LDSTNEEALDGIIGFGKSNSSMISQLASSGGVRKMFAHCLDGI-NGGGIFAIGHVVQ-------P-----EVNKTPLVPN 275 (484)
Q Consensus 209 ~~~~~~~~~~GIlGLg~~~~s~~~~L~~~g~i~~~FSl~l~~~-~~~G~l~~Ggid~-------~-----~~~~~p~~~~ 275 (484)
.+ .....+||||||++..+++.+|.+..+.+++||+||.+. ..+|.|+||| |+ . ++.|+|++.+
T Consensus 149 ~~--~~~~~dGIlGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~~~~~G~l~fGg-d~~~~~~~~G~~~~~~l~~~Pl~~~ 225 (403)
T 3aup_A 149 KG--LPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGD-APNNMRQFQNQDIFHDLAFTPLTIT 225 (403)
T ss_dssp SS--SSTTCCEEEECSSSTTSHHHHHHHHHTCCSEEEEECCSCTTSCEEEEESC-HHHHC--CTTCCTTTTEEEEECEEC
T ss_pred cC--CCCCCceEEECCCCCcCHHHHHHhhcCCCCeEEEEcCCCCCCCeeEEECC-CchhccccccccccCceeecccccC
Confidence 11 345689999999999999999976554479999999874 5689999999 63 2 6899999854
Q ss_pred -CCceEEEEeEEEEccEEe-ecCCcccc--cCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCccc-ccCCCCcee
Q 011500 276 -QPHYSINMTAVQVGLDFL-NLPTDVFG--VGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVH-TVHDEYTCF 350 (484)
Q Consensus 276 -~~~w~v~l~~i~v~~~~~-~~~~~~~~--~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~-~~~~~~~C~ 350 (484)
..+|.|.+++|+||++.+ .++...+. ..+...+||||||++++||+++|++|++++.+........ .......|+
T Consensus 226 ~~~~y~v~l~~i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~c~ 305 (403)
T 3aup_A 226 LQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCF 305 (403)
T ss_dssp TTSCEEECEEEEEETTEEEECC------------CCEEECSSCSSEEECHHHHHHHHHHHHHTSCGGGEECCCTTCSCEE
T ss_pred CCCcceEEEEEEEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHHHHHHHHHhccccccCCCCCCCceE
Confidence 369999999999999988 66654442 1234679999999999999999999999997665321111 001122465
Q ss_pred ccCCCccCCCceEEEEECCC--cEEEECCCeeeEEc-CCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEE
Q 011500 351 QYSESVDEGFPNVTFHFENS--VSLKVYPHEYLFPF-EDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVI 427 (484)
Q Consensus 351 ~~~~~~~~~~p~i~f~f~gg--~~~~l~p~~y~~~~-~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rI 427 (484)
. |+..+.+|+|+|+|.|+ ++|+|||++|+++. ++..|++|+.... +..+.||||+.|||++|+|||++|+||
T Consensus 306 ~--c~~~~~~P~i~f~f~g~~~~~~~l~~~~y~~~~~~~~~C~~~~~~~~---~~~~~~ILG~~fl~~~yvvfD~~~~rI 380 (403)
T 3aup_A 306 N--SNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGM---QPRAEITLGARQLEENLVVFDLARSRV 380 (403)
T ss_dssp C--GGGCCCCCCEEEEESSTTCCEEEECHHHHEEEC---CEEECEEECCS---CCSSSEEECHHHHTTSCEEEETTTTEE
T ss_pred E--CCCcCcCCcEEEEEcCCCceEEEEcccceEEEcCCCeEEEEEEcCCC---CCCCcEEEChHHhcCeEEEEECCCCEE
Confidence 3 33344789999999444 59999999999987 4568999887652 113579999999999999999999999
Q ss_pred EE-------EeCCCCC
Q 011500 428 GW-------TEYNCSS 436 (484)
Q Consensus 428 Gf-------A~~~c~~ 436 (484)
|| ++++|+.
T Consensus 381 Gf~A~~~~~~~~~C~~ 396 (403)
T 3aup_A 381 GFSTSSLHSHGVKCAD 396 (403)
T ss_dssp EEESSCGGGGTCCGGG
T ss_pred EEecccccccCCCccc
Confidence 99 5566764
No 21
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*
Probab=100.00 E-value=5.4e-55 Score=451.28 Aligned_cols=316 Identities=22% Similarity=0.322 Sum_probs=254.9
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+||||||++.|+|||||+++||+|..| |.. ++.|||++|+||+...
T Consensus 72 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c--c~~-------~~~y~~~~SsT~~~~~---------------- 126 (455)
T 3lpj_A 72 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL-------HRYYQRQLSSTYRDLR---------------- 126 (455)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC-------SCCCCGGGCTTCEEEE----------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEcCCCcceEEecccc--ccc-------CCcccCCCCCCcccCC----------------
Confidence 456899999999999999999999999999999887 433 3699999999999976
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEecc-cCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKV-SGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN--- 227 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~-~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~--- 227 (484)
|.|.+.|++|+ +.|.+++|+|+|++. ... .++.|+++....+.+. .....+||||||++.
T Consensus 127 ------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~~s~ 190 (455)
T 3lpj_A 127 ------KGVYVPYTQGK-WEGELGTDLVSIPHGPNVT-------VRANIAAITESDKFFI--NGSNWEGILGLAYAEIAR 190 (455)
T ss_dssp ------EEEEEECSSCE-EEEEEEEEEEECTTSCSCE-------EEEEEEEEEEEESCSC--TTCCCCEEEECSCGGGCS
T ss_pred ------ccEEEEeCCeE-EEEEEEEEEEEECCCccee-------eEEEEEEEEccCcccc--cCCCcceEEEeCcccccc
Confidence 69999999999 699999999999752 111 1357888887766552 235689999999864
Q ss_pred -----CcHHHHHHhcCCCCcceeeeecCC-----------CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEE
Q 011500 228 -----SSMISQLASSGGVRKMFAHCLDGI-----------NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQ 287 (484)
Q Consensus 228 -----~s~~~~L~~~g~i~~~FSl~l~~~-----------~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~ 287 (484)
.+++++|++|+.|+++||+||.+. ..+|.|+|||+|+++ +.|+|+. ...+|.|.+++|.
T Consensus 191 ~~~~~~~~~~~L~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~ 269 (455)
T 3lpj_A 191 PDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVE 269 (455)
T ss_dssp SCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC-SBTTBBCCEEEEE
T ss_pred ccCCCCcHHHHHHHccCCCceeEEEeccccccccccccccCCCceEEECCcCcccccCceEEEecC-CCceeEEEEeEEE
Confidence 478999999999988999999742 457999999999865 7899998 5789999999999
Q ss_pred EccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc---cCCCCceeccCCCccCCCceEE
Q 011500 288 VGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVT 364 (484)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~ 364 (484)
|+++.+.++...+ ....+||||||+++++|.+++++|++++++......... ..+.++|+.........+|+|+
T Consensus 270 v~g~~~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~g~~~~C~~~~~~~~~~~P~i~ 346 (455)
T 3lpj_A 270 INGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVIS 346 (455)
T ss_dssp ETTEECCCCGGGG---GSSCEEECTTSSSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEE
T ss_pred ECCEEcccccccc---CCCeEEEECCCcceeCCHHHHHHHHHHhhhhccccccCcccccCcceecccccCCchhcCCcEE
Confidence 9999987665433 246799999999999999999999999998853211111 2235789865543334589999
Q ss_pred EEECCCc-----EEEECCCeeeEEcC-----CeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 365 FHFENSV-----SLKVYPHEYLFPFE-----DLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 365 f~f~gg~-----~~~l~p~~y~~~~~-----~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
|+|.++. +|+|+|++|+++.. ...|+++.... ..+.||||++|||++|+|||++|+|||||+++|
T Consensus 347 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~f~~~~-----~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 421 (455)
T 3lpj_A 347 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-----SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 421 (455)
T ss_dssp EEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEE-----ESSCEEECHHHHTTEEEEEETTTTEEEEEEETT
T ss_pred EEEcCCCcCceEEEEECHHHheEeccCCCCCCceEEEEeccC-----CCCcEEEChHHhCCeEEEEECCCCEEEEEeccc
Confidence 9994432 59999999999862 25898643211 135799999999999999999999999999999
Q ss_pred CCC
Q 011500 435 SSS 437 (484)
Q Consensus 435 ~~~ 437 (484)
+..
T Consensus 422 ~~~ 424 (455)
T 3lpj_A 422 HVH 424 (455)
T ss_dssp CCC
T ss_pred ccc
Confidence 764
No 22
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=100.00 E-value=8.5e-56 Score=445.39 Aligned_cols=295 Identities=20% Similarity=0.372 Sum_probs=249.1
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.++.|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 58 ~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~-------~~~y~~~~SsT~~~~~------------ 118 (375)
T 1miq_A 58 DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSI-------KNLYDSSKSKSYEKDG------------ 118 (375)
T ss_dssp GTBCEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGG-------SCCBCGGGCTTCEEEE------------
T ss_pred cCCCCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccC-------CCcCCCccCCceEECC------------
Confidence 356789999999999999999999999999999999986 4654 4699999999999865
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeee----ccCCCCCCCCcccceeeec
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGAR----QSGNLDSTNEEALDGIIGF 223 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~----~~~~~~~~~~~~~~GIlGL 223 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ ++ .|||+.. ++ .| .....+|||||
T Consensus 119 ----------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~v--------~~-~Fg~~~~~~~~~~-~f---~~~~~dGilGL 174 (375)
T 1miq_A 119 ----------TKVDITYGSGT-VKGFFSKDLVTLGHLSM--------PY-KFIEVTDTDDLEP-IY---SSVEFDGILGL 174 (375)
T ss_dssp ----------EEEEEEETTEE-EEEEEEEEEEEETTEEE--------EE-EEEEEEECGGGTT-HH---HHSCCCEEEEC
T ss_pred ----------cEEEEEeCCCe-EEEEEEEEEEEEcCceE--------Cc-EEEEEEecccccc-cc---ccCCCceEEeC
Confidence 69999999999 89999999999987543 37 9999998 44 33 23568999999
Q ss_pred CCCCC------cHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccE
Q 011500 224 GKSNS------SMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLD 291 (484)
Q Consensus 224 g~~~~------s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (484)
|++.. +++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. .+.+|.|.++ |+||++
T Consensus 175 g~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~-i~v~g~ 252 (375)
T 1miq_A 175 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN-HDLYWQIDLD-VHFGKQ 252 (375)
T ss_dssp SSCCTTCSSCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEEBS-SSSSSEEEEE-EEETTE
T ss_pred CCCcccccCCCCHHHHHHhccCcCCCEEEEEecCCCCCCeEEEEcccCHHHcCCceEEEecC-CCceEEEEEE-EEECCE
Confidence 99764 689999999999 69999999985 358999999999764 7899997 5789999999 999998
Q ss_pred EeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCc
Q 011500 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSV 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~ 371 (484)
.+ ....+++||||+++++|.+++++|.+++++.+.. ..+.+.++|+ . ..+|+|+|+| +|+
T Consensus 253 ~~----------~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~~---~~g~~~~~C~-----~-~~~P~i~f~f-~g~ 312 (375)
T 1miq_A 253 TM----------EKANVIVDSGTTTITAPSEFLNKFFANLNVIKVP---FLPFYVTTCD-----N-KEMPTLEFKS-ANN 312 (375)
T ss_dssp EE----------EEEEEEECTTBSSEEECHHHHHHHHHHHTCEECT---TSSCEEEETT-----C-TTCCCEEEEC-SSC
T ss_pred Ec----------ccceEEecCCCccEEcCHHHHHHHHHHhCCcccC---CCCeEEEECC-----C-CCCCcEEEEE-CCE
Confidence 76 1356999999999999999999999999765321 1222345674 2 5689999999 899
Q ss_pred EEEECCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 372 SLKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 372 ~~~l~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+++|||++|+++. +...|+ +|+..+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 313 ~~~l~~~~yi~~~~~~g~~~C~~~~~~~~~----~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~~ 374 (375)
T 1miq_A 313 TYTLEPEYYMNPILEVDDTLCMITMLPVDI----DSNTFILGDPFMRKYFTVFDYDKESVGFAIAK 374 (375)
T ss_dssp EEEECGGGSEEESSSSSCSEEEESEEECCS----SSSEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEECHHHhEeeccCCCCCeEEEEEEECCC----CCCcEEECHHHhccEEEEEECCCCEEEEEEcC
Confidence 9999999999987 245897 8887542 12689999999999999999999999999874
No 23
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=100.00 E-value=8.5e-55 Score=440.83 Aligned_cols=315 Identities=23% Similarity=0.366 Sum_probs=251.8
Q ss_pred CCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCC
Q 011500 71 DGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLT 150 (484)
Q Consensus 71 ~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~ 150 (484)
..+..|+++|+||||||++.|+|||||+++||+|.+|..|. +.|||++|+||+...
T Consensus 10 ~~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~~~---------~~f~~~~SsT~~~~~--------------- 65 (383)
T 2ewy_A 10 DSGRGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSYID---------TYFDTERSSTYRSKG--------------- 65 (383)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTTBS---------CCCCGGGCTTCEEEE---------------
T ss_pred CCCCcEEEEEEecCCCceEEEEEecCCCceEEecCCCCccc---------cCcccccCccceeCC---------------
Confidence 34567999999999999999999999999999999886653 589999999999976
Q ss_pred CCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC--
Q 011500 151 DCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS-- 228 (484)
Q Consensus 151 ~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~-- 228 (484)
|.|.+.|++|+ +.|.+++|+|+|++.... ...+.|++..+..+.+. .....+||||||++..
T Consensus 66 -------~~~~i~Yg~Gs-~~G~~~~Dtv~i~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~dGilGLg~~~~s~ 129 (383)
T 2ewy_A 66 -------FDVTVKYTQGS-WTGFVGEDLVTIPKGFNT------SFLVNIATIFESENFFL--PGIKWNGILGLAYATLAK 129 (383)
T ss_dssp -------EEEEEECSSCE-EEEEEEEEEEEETTTEEE------EEEEEEEEEEEEESCSC--TTCCCCEEEECSCGGGCS
T ss_pred -------ceEEEEECCcE-EEEEEEEEEEEECCCccc------eeEEEEEEEEeecceee--ccCcCceEEecCchhccc
Confidence 69999999998 799999999999753211 11367888776555442 2356899999998653
Q ss_pred ------cHHHHHHhcCCCCcceeeeecC--------CCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEcc
Q 011500 229 ------SMISQLASSGGVRKMFAHCLDG--------INGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGL 290 (484)
Q Consensus 229 ------s~~~~L~~~g~i~~~FSl~l~~--------~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~ 290 (484)
+++++|++|+.++++||+||.+ ...+|.|+|||+|++ ++.|+|+. ...+|.|.+++|+||+
T Consensus 130 ~~~~~~~~~~~l~~q~~i~~~FS~~l~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~g 208 (383)
T 2ewy_A 130 PSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIK-EEWYYQIEILKLEIGG 208 (383)
T ss_dssp SCTTSCCHHHHHHHHHTCCSCEEEEECCC---------CCEEEEETSCCGGGCCSCEEEEECS-SBTTBBCCEEEEEETT
T ss_pred ccccccCHHHHHHHccCCCcceEEEeeccccccccCCCCCeEEEeCccchhhccCccEEEecC-CCceEEEEEEEEEECC
Confidence 5889999999888899999963 145799999999965 48999998 5689999999999999
Q ss_pred EEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc---cCCCCceeccCCCccCCCceEEEEE
Q 011500 291 DFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVTFHF 367 (484)
Q Consensus 291 ~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~f~f 367 (484)
+.+.++...+. ...+||||||+++++|++++++|++++.+......... ..+.++|+..+......+|+|+|+|
T Consensus 209 ~~~~~~~~~~~---~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f 285 (383)
T 2ewy_A 209 QSLNLDCREYN---ADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWSYFPKISIYL 285 (383)
T ss_dssp EECCCCTTTTT---SSCEEECTTCSSEEEEHHHHHHHHHHHHHTTCSSCCCHHHHHTSEEEEECSSSCGGGGSCCEEEEE
T ss_pred EEccccccccC---CccEEEEcCCccccCCHHHHHHHHHHHhhhcccccCccccccccccccccCCcccHhhCCcEEEEE
Confidence 98876554332 46799999999999999999999999988754211111 1234689865443334689999999
Q ss_pred CCC-----cEEEECCCeeeEEc----CCeEEEE--EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCC
Q 011500 368 ENS-----VSLKVYPHEYLFPF----EDLWCIG--WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSS 436 (484)
Q Consensus 368 ~gg-----~~~~l~p~~y~~~~----~~~~C~~--i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~ 436 (484)
.++ .+++|||++|+.+. .+..|++ +... .+.||||++|||++|+|||++|+|||||+++|+.
T Consensus 286 ~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~C~~~~i~~~-------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c~~ 358 (383)
T 2ewy_A 286 RDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPS-------TNALVIGATVMEGFYVIFDRAQKRVGFAASPCAE 358 (383)
T ss_dssp ECSSTTEEEEEEECHHHHEEEECCCTTCSEEEEESEEEE-------SSCEEECHHHHTTEEEEEETTTTEEEEEECTTCB
T ss_pred CCCCCCceEEEEEChHHheeecccCCCCceeEEEEecCC-------CCcEEEChHHhCCeeEEEECCCCeEEEEeccCCC
Confidence 443 37999999999876 2568975 3332 2569999999999999999999999999999974
No 24
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...
Probab=100.00 E-value=1.4e-54 Score=440.80 Aligned_cols=313 Identities=22% Similarity=0.329 Sum_probs=252.6
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+||||||++.|+|||||+++||+|..|..|. +.|||++|+||+...
T Consensus 19 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~~~---------~~y~~~~SsT~~~~~---------------- 73 (395)
T 2qp8_A 19 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPFLH---------RYYQRQLSSTYRDLR---------------- 73 (395)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTTCS---------CCCCGGGCTTCEEEE----------------
T ss_pred CCceEEEEEEecCCCceEEEEEecCCCceEEECCCCcccc---------CCcCcccCCCceeCC----------------
Confidence 4568999999999999999999999999999999886542 589999999999976
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEe-cccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYD-KVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN--- 227 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig-~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~--- 227 (484)
|.|.+.|++|+ +.|.+++|+|+|+ +.... ..+.|++.....+.|. .....+||||||++.
T Consensus 74 ------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~g~~~~-------~~~~~~~~~~~~~~f~--~~~~~dGIlGLg~~~~s~ 137 (395)
T 2qp8_A 74 ------KGVYVPYTQGK-WEGELGTDLVSIPHGPNVT-------VRANIAAITESDKFFI--NGSNWEGILGLAYAEIAR 137 (395)
T ss_dssp ------EEEEEECSSCE-EEEEEEEEEEECTTSCSCE-------EEEEEEEEEEEESCSC--TTCCCCEEEECSCGGGCS
T ss_pred ------ceEEEEECCcE-EEEEEEeEEEEECCCCCce-------EEEEEEEEEccCcccc--cccCccceEEcCchhhcc
Confidence 69999999998 6999999999997 33222 1356887776555442 235689999999864
Q ss_pred -----CcHHHHHHhcCCCCcceeeeecCC-----------CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEE
Q 011500 228 -----SSMISQLASSGGVRKMFAHCLDGI-----------NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQ 287 (484)
Q Consensus 228 -----~s~~~~L~~~g~i~~~FSl~l~~~-----------~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~ 287 (484)
.+++++|++|+.++++||+||.+. ..+|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+
T Consensus 138 ~~~~~~~~~~~l~~q~~i~~~FS~~L~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~ 216 (395)
T 2qp8_A 138 PDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVE 216 (395)
T ss_dssp SCTTSCCHHHHHHHHSCCCSCEEEEECCCSSCCCHHHHHHSCCEEEEETSCCGGGEEEEEEEEECC-SBTTBBCCEEEEE
T ss_pred CCCCCCCHHHHHHHccCCcceEEEEeccccccccccccccCCCcEEEECCcCcccccCceEEeccC-CCceEEEEEEEEE
Confidence 368999999999988999999752 367999999999764 7899998 5689999999999
Q ss_pred EccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc---cCCCCceeccCCCccCCCceEE
Q 011500 288 VGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVT 364 (484)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~ 364 (484)
|+++.+.++...+. ...+||||||+++++|++++++|++++.+......... ..+.++|+..+......+|+|+
T Consensus 217 v~g~~~~~~~~~~~---~~~aiiDSGTt~~~lP~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~ 293 (395)
T 2qp8_A 217 INGQDLKMDCKEYN---YDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVIS 293 (395)
T ss_dssp ETTEECCCCGGGGG---SSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCHHHHTTCSCEEESTTCCCGGGSCCEE
T ss_pred ECCEEcccCccccC---CceEEEEcCCCcEecCHHHHHHHHHHHhhhcccccCCccccccccccccccccchHhhCCcEE
Confidence 99998876554332 46799999999999999999999999988754221111 1124689865543334689999
Q ss_pred EEECCCc-----EEEECCCeeeEEcC-----CeEEE--EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 365 FHFENSV-----SLKVYPHEYLFPFE-----DLWCI--GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 365 f~f~gg~-----~~~l~p~~y~~~~~-----~~~C~--~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
|+|.|+. +++|+|++|+.+.. ...|+ ++... .+.||||++|||++|+|||++|+|||||++
T Consensus 294 f~f~g~~~~~~~~~~l~p~~yi~~~~~~~~~~~~C~~~~i~~~-------~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~ 366 (395)
T 2qp8_A 294 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQS-------STGTVMGAVIMEGFYVVFDRARKRIGFAVS 366 (395)
T ss_dssp EEEECSSTTEEEEEEECHHHHEEEECCTTCCSCEEEEECEEEE-------SSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EEEccCCCCceEEEEECHHHhEeecccCCCCCceEEEEEecCC-------CCcEEEChHHhCCeeEEEECCCCEEEEEec
Confidence 9994442 79999999998752 24896 45432 256999999999999999999999999999
Q ss_pred CCCC
Q 011500 433 NCSS 436 (484)
Q Consensus 433 ~c~~ 436 (484)
+|+.
T Consensus 367 ~c~~ 370 (395)
T 2qp8_A 367 ACHV 370 (395)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9985
No 25
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...
Probab=100.00 E-value=4.1e-54 Score=438.47 Aligned_cols=315 Identities=23% Similarity=0.329 Sum_probs=251.3
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+||||||++.|+|||||+++||+|.+| |.. ++.|||++|+||+...
T Consensus 26 ~~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c--~~~-------~~~y~~~~SsT~~~~~---------------- 80 (402)
T 3vf3_A 26 SGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH--PFL-------HRYYQRQLSSTYRDLR---------------- 80 (402)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC--TTC-------SCCCCGGGCTTCEEEE----------------
T ss_pred CCCEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC--Ccc-------cCCcCcccCcccccCC----------------
Confidence 356899999999999999999999999999999987 432 3699999999999976
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEec-ccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDK-VSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN--- 227 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~-~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~--- 227 (484)
|.|.+.|++|+ +.|.+++|+|+|++ .... ..+.|+++....+.+. .....+||||||++.
T Consensus 81 ------~~~~i~Yg~Gs-~~G~~~~D~v~ig~~~~~~-------~~~~~~~~~~~~~~~~--~~~~~dGIlGLg~~~~s~ 144 (402)
T 3vf3_A 81 ------KGVYVPYTQGK-WEGELGTDLVSIPHGPNVT-------VRANIAAITESDKFFI--NGSNWEGILGLAYAEIAR 144 (402)
T ss_dssp ------EEEEEECSSCE-EEEEEEEEEEECTTSCSCE-------EEEEEEEEEEEESCSC--TTCCCCEEEECSCGGGCS
T ss_pred ------CEEEEEECcEE-EEEEEEEEEEEECCccccc-------eeeeEEEEEccccccc--cCCCccceEEcCchhhcc
Confidence 69999999999 79999999999984 2221 1245788777665542 245689999999864
Q ss_pred -----CcHHHHHHhcCCCCcceeeeecC-----------CCCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEE
Q 011500 228 -----SSMISQLASSGGVRKMFAHCLDG-----------INGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQ 287 (484)
Q Consensus 228 -----~s~~~~L~~~g~i~~~FSl~l~~-----------~~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~ 287 (484)
.+++++|++|+.|+++||+||.+ ...+|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+
T Consensus 145 ~~~~~~~~~~~L~~q~~i~~~FS~~l~~~~~~~~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~ 223 (402)
T 3vf3_A 145 PDDSLEPFFDSLVKQTHVPNLFSLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIR-REWYYEVIIVRVE 223 (402)
T ss_dssp SCTTSCCHHHHHHHHSCCCSCEEEEECCCC-------------EEEEESSCCGGGEEEEEEEEECS-SBTTBEECEEEEE
T ss_pred cCCcCCcHHHHHHHccCCccceEEEeecccccccccccccCCCCEEEeCCcCcccccCceEEEeCC-cCcEEEEEEeEEE
Confidence 47899999999998899999974 1347999999999875 7899998 5789999999999
Q ss_pred EccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccc---cCCCCceeccCCCccCCCceEE
Q 011500 288 VGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHT---VHDEYTCFQYSESVDEGFPNVT 364 (484)
Q Consensus 288 v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~---~~~~~~C~~~~~~~~~~~p~i~ 364 (484)
|+++.+.++...+ ....++|||||+++++|.+++++|++++++......... ..+.++|+.........+|+|+
T Consensus 224 v~g~~~~~~~~~~---~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~ 300 (402)
T 3vf3_A 224 INGQDLKMDCKEY---NYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCWQAGTTPWNIFPVIS 300 (402)
T ss_dssp ETTEECCCCGGGG---GSSCEEECTTCCSEEEEHHHHHHHHHHHHHHTTTSCCCTTGGGTCSCEEEETTCCCGGGSCCEE
T ss_pred ECCEEeccccccc---CCCeEEEECCCCcccCCHHHHHHHHHHHhhhccccccCccccccccccccccccchHhhCCceE
Confidence 9999987654433 246799999999999999999999999998853211111 1235789865543334689999
Q ss_pred EEECCCc-----EEEECCCeeeEEcCC-----eEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 365 FHFENSV-----SLKVYPHEYLFPFED-----LWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 365 f~f~gg~-----~~~l~p~~y~~~~~~-----~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
|+|.++. +++|+|++|+.+... ..|+++.... ..+.||||++|||++|+|||++++|||||+++|
T Consensus 301 f~f~g~~~~~~~~~~l~~~~yi~~~~~~~~~~~~C~~~~~~~-----~~~~~ILG~~fl~~~yvvfD~~~~rIGfA~~~c 375 (402)
T 3vf3_A 301 LYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFAISQ-----SSTGTVMGAVIMEGFYVVFDRARKRIGFAVSAC 375 (402)
T ss_dssp EEEECSSTTEEEEEEECHHHHEEECCCGGGTTEEEEEECEEE-----ESSCEEECHHHHTTEEEEEEGGGTEEEEEEETT
T ss_pred EEEecCCCCceEEEEECHHHheehhccCCCCCceEEEEeccC-----CCCcEEEChHHhCCeEEEEECCCCEEEEEeccc
Confidence 9994432 599999999998622 5898532211 135799999999999999999999999999999
Q ss_pred CC
Q 011500 435 SS 436 (484)
Q Consensus 435 ~~ 436 (484)
+.
T Consensus 376 ~~ 377 (402)
T 3vf3_A 376 HV 377 (402)
T ss_dssp CC
T ss_pred Cc
Confidence 95
No 26
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=100.00 E-value=4e-55 Score=448.11 Aligned_cols=295 Identities=20% Similarity=0.354 Sum_probs=248.5
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.+..|+++|+||||||++.|++||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 133 n~~d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~-------~~~ydps~SsT~~~~~------------ 193 (451)
T 3qvc_A 133 DLANVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCES-------KNHYDSSKSKTYEKDD------------ 193 (451)
T ss_dssp GGBCEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTT-------SCCBCGGGCTTCEEEE------------
T ss_pred ecCCCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCC-------CCCCCCCCCcccccCC------------
Confidence 456889999999999999999999999999999999984 5654 4699999999999865
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeee----ccCCCCCCCCcccceeeec
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGAR----QSGNLDSTNEEALDGIIGF 223 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~----~~~~~~~~~~~~~~GIlGL 223 (484)
+.|.+.|++|+ +.|.+++|+|++|+.. ++ +.|||+.. .++ + .....+|||||
T Consensus 194 ----------~~f~i~YgdGs-~~G~~~~Dtv~igg~~--------v~-~~Fg~a~~t~~~~~~-f---~~~~~dGILGL 249 (451)
T 3qvc_A 194 ----------TPVKLTSKAGT-ISGIFSKDLVTIGKLS--------VP-YKFIEMTEIVGFEPF-Y---SESDVDGVFGL 249 (451)
T ss_dssp ----------EEEEEECSSEE-EEEEEEEEEEEETTEE--------EE-EEEEEEEEEEECTTH-H---HHSCCCEEEEC
T ss_pred ----------CEEEEEECCCE-EEEEEEEEEEEECCEE--------EE-EEEEEEEeccccCCC-c---cCCCCCEEEec
Confidence 79999999999 9999999999998753 44 89999988 554 3 34467999999
Q ss_pred CCCC------CcHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccE
Q 011500 224 GKSN------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLD 291 (484)
Q Consensus 224 g~~~------~s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~ 291 (484)
|++. .+++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. ++.+|.|.++ |+||++
T Consensus 250 g~~~~s~~~~~~~~~~L~~qg~I~~~~FS~~L~~~~~~~G~l~fGgiD~s~y~G~l~~~pv~-~~~~w~v~l~-I~Vgg~ 327 (451)
T 3qvc_A 250 GWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLN-HDLMWQVDLD-VHFGNV 327 (451)
T ss_dssp SSBCSSSSCCCCHHHHHHHTTSSSSSEEEEECCTTCTTEEEEEESSCCGGGEEEEEEEEECS-STTSSEEEEE-EEETTE
T ss_pred CCCcccccCCCCHHHHHHHcCCCCCCEEEEEEcCCCCCCCEEEECCcchhhcCCceEEEEcc-cCCeeEEEEE-EEECCc
Confidence 9975 4699999999999 69999999985 357999999999874 8899998 6789999999 999998
Q ss_pred EeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCc
Q 011500 292 FLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSV 371 (484)
Q Consensus 292 ~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~ 371 (484)
. .....+++||||+++++|++++++|.+++++.... .. .+|.++|. ...+|+|+|+| +|.
T Consensus 328 -~---------~~~~~aiiDSGTt~i~lP~~~~~~i~~~i~a~~~~---~~-----g~y~v~C~-~~~~P~itf~f-gg~ 387 (451)
T 3qvc_A 328 -S---------SKKANVILDSATSVITVPTEFFNQFVESASVFKVP---FL-----SLYVTTCG-NTKLPTLEYRS-PNK 387 (451)
T ss_dssp -E---------EEEEEEEECTTBSSEEECHHHHHHHHTTTTCEECT---TS-----SCEEEETT-CTTCCCEEEEE-TTE
T ss_pred -c---------CCCceEEEeCCCccccCCHHHHHHHHHHcCCeecC---CC-----CeEEeeCC-cCcCCcEEEEE-CCE
Confidence 1 12467999999999999999999999998665421 11 23344445 46789999999 899
Q ss_pred EEEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 372 SLKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 372 ~~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
+++|||++|+++.. +..|+ ++...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 388 ~i~lp~~~yi~~~~~~~~~~C~~~i~~~~~----~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak 449 (451)
T 3qvc_A 388 VYTLEPKQYLEPLENIFSALCMLNIVPIDL----EKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK 449 (451)
T ss_dssp EEEECHHHHEEECTTTSTTEEEECEEECCC----STTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEEEcHHHheeecccCCCCeEEEEEEeCCC----CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 99999999999862 46886 6766541 14689999999999999999999999999975
No 27
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=100.00 E-value=7.2e-55 Score=431.99 Aligned_cols=297 Identities=17% Similarity=0.254 Sum_probs=247.7
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.+..|+++|+|| ||++.|+|||||+++||+|..|. .|.. ..++.|||++| |++...
T Consensus 13 n~~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~-----~~~~~y~~~~S-T~~~~~------------ 72 (330)
T 1yg9_A 13 VFINTQYAGITKIG--NQNFLTVFDSTSCNVVVASQECVGGACVC-----PNLQKYEKLKP-KYISDG------------ 72 (330)
T ss_dssp EEECTTSEEEEEET--TEEEEEEEETTCCCEEEECTTCCSGGGGS-----TTCCCCCCSSC-EEEEEE------------
T ss_pred cCCCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCCccCcc-----cccCccCCCCC-ceEECC------------
Confidence 45678999999999 89999999999999999999986 5721 22469999999 999855
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN 227 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~ 227 (484)
+.|.+.|++|+ +.|.+++|+|+|++.++ +++.|||+......| ....++||||||++.
T Consensus 73 ----------~~~~i~Yg~Gs-~~G~~~~Dtv~ig~~~~--------~~~~fg~~~~~~~~f---~~~~~~GilGLg~~~ 130 (330)
T 1yg9_A 73 ----------NVQVKFFDTGS-AVGRGIEDSLTISQLTT--------SQQDIVLADELSQEV---CILSADVVVGIAAPG 130 (330)
T ss_dssp ----------EEEEEETTTEE-EEEEEEEEEEEETTEEE--------EEEEEEEEEEECTHH---HHTTCSEEEECSCTT
T ss_pred ----------CEEEEEECCce-EEEEEEEEEEEECCEEE--------cCeEEEEEEEccccc---ccccCceEEEcCcch
Confidence 69999999998 59999999999987543 389999999874333 234689999999987
Q ss_pred Cc-------HHHHHHhcCCCCcceeeeecCC-CC--cceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEe
Q 011500 228 SS-------MISQLASSGGVRKMFAHCLDGI-NG--GGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFL 293 (484)
Q Consensus 228 ~s-------~~~~L~~~g~i~~~FSl~l~~~-~~--~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~ 293 (484)
.+ ++++|++||+++++||+||.+. +. +|.|+|||+|+++ +.|+|+. .+.+|.|.+++|+|+++.+
T Consensus 131 ~s~~~~~~~~~~~l~~qg~i~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~w~v~l~~i~v~~~~~ 209 (330)
T 1yg9_A 131 CPNALKGKTVLENFVEENLIAPVFSIHHARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLV-GDDSWKFRLDGVKIGDTTV 209 (330)
T ss_dssp SCCTTSCCCHHHHHHHTTSSCSEEEEEEEECTTSCEEEEEEETSCCGGGEEEEEEEEEBS-CTTSCCEECSEEEETTEEE
T ss_pred hccccCCCCHHHHHHhcCCCCceEEEEEcCCCCCCCCCEEEECCcCHHHccCceEEEECC-CCCEEEEEeCeEEECCEEE
Confidence 55 9999999998889999999875 22 7999999999864 7899998 6789999999999999876
Q ss_pred ecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCccccc--CC-CCceeccCCCccCCCceEEEEECCC
Q 011500 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV--HD-EYTCFQYSESVDEGFPNVTFHFENS 370 (484)
Q Consensus 294 ~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~--~~-~~~C~~~~~~~~~~~p~i~f~f~gg 370 (484)
. ..+..+|+||||+++++|++++++|++++++... ..+ .+ .++| .....+|+|+|+| +|
T Consensus 210 ~--------~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~~~----~~g~~~~~~~~C-----~~~~~~p~i~f~f-gg 271 (330)
T 1yg9_A 210 A--------PAGTQAIIDTSKAIIVGPKAYVNPINEAIGCVVE----KTTTRRICKLDC-----SKIPSLPDVTFVI-NG 271 (330)
T ss_dssp E--------CTTCEEEECTTCSSEEEEHHHHHHHHHHHTCEEE----ECSSCEEEEECG-----GGGGGSCCEEEEE-TT
T ss_pred c--------CCCcEEEEecCCccccCCHHHHHHHHHHhCCccc----CCCceEEEEEEC-----CCccccCcEEEEE-CC
Confidence 3 2256799999999999999999999999966531 111 22 3455 4445689999999 99
Q ss_pred cEEEECCCeeeEEcCCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 371 VSLKVYPHEYLFPFEDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 371 ~~~~l~p~~y~~~~~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++++|||++|+++. +..|+ +|.... ..+.||||++|||++|+|||++|+|||||+++
T Consensus 272 ~~~~l~~~~y~~~~-~~~C~~~i~~~~-----~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~~ 329 (330)
T 1yg9_A 272 RNFNISSQYYIQQN-GNLCYSGFQPCG-----HSDHFFIGDFFVDHYYSEFNWENKTMGFGRSV 329 (330)
T ss_dssp EEEEECHHHHEEEE-TTEEEESEEEET-----TCSSEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred EEEEECHHHhcccC-CCcEEEEEEeCC-----CCCeEEecHHHhhheEEEEECCCCEEEEEECC
Confidence 99999999999986 56897 676542 24579999999999999999999999999874
No 28
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=100.00 E-value=8.4e-55 Score=445.08 Aligned_cols=296 Identities=20% Similarity=0.337 Sum_probs=247.1
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC--CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK--ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGG 147 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~--~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~ 147 (484)
++.++.|+++|+||||||++.|++||||+++||+|..|. .|.. ++.|||++|+|++...
T Consensus 134 n~~~~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~-------~~~ydps~SsT~~~~~------------ 194 (453)
T 2bju_A 134 DFQNIMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLT-------KHLYDSSKSRTYEKDG------------ 194 (453)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGG-------SCCBCGGGCTTCEEEE------------
T ss_pred ecCCCEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCC-------CCcCCCccCCceeECC------------
Confidence 356789999999999999999999999999999999986 5654 4699999999999965
Q ss_pred CCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeecc--CCCCCCCCcccceeeecCC
Q 011500 148 PLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQS--GNLDSTNEEALDGIIGFGK 225 (484)
Q Consensus 148 ~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~--~~~~~~~~~~~~GIlGLg~ 225 (484)
|.|.+.|++|+ +.|.+++|+|++++.+ ++ +.|||+.... +... .....+||||||+
T Consensus 195 ----------~~~~i~YgdGs-~~G~~~~Dtv~ig~~~--------v~-~~Fg~a~~~~~~g~~f--~~~~~dGIlGLg~ 252 (453)
T 2bju_A 195 ----------TKVEMNYVSGT-VSGFFSKDLVTVGNLS--------LP-YKFIEVIDTNGFEPTY--TASTFDGILGLGW 252 (453)
T ss_dssp ----------EEEEEECSSSE-EEEEEEEEEEEETTEE--------EE-EEEEEEEECGGGTTHH--HHSSCCEEEECSC
T ss_pred ----------cEEEEEcCCCC-eEEEEEEEEEEEeCcE--------EE-EEEEEEEEecccCccc--cccCCceeEeccC
Confidence 79999999999 8999999999998743 44 8999999876 4321 2346899999999
Q ss_pred CC------CcHHHHHHhcCCC-CcceeeeecCC-CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEe
Q 011500 226 SN------SSMISQLASSGGV-RKMFAHCLDGI-NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFL 293 (484)
Q Consensus 226 ~~------~s~~~~L~~~g~i-~~~FSl~l~~~-~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~ 293 (484)
+. .+++++|++||+| +++||+||.+. ..+|.|+|||+|+++ +.|+|+. .+.+|.|.++ |+||+ .+
T Consensus 253 ~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~D~~~y~G~l~~~pv~-~~~~w~V~l~-I~Vgg-~~ 329 (453)
T 2bju_A 253 KDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLN-HDLYWQITLD-AHVGN-IM 329 (453)
T ss_dssp GGGSTTCCCCHHHHHHHTTSSSSCEEEEECCBTTTBCEEEEESSCCGGGEEEEEEEEEEE-EETTEEEEEE-EEETT-EE
T ss_pred CcccccCCCcHHHHHHHCCCCCCCEEEEEeCCCCCCCeEEEECCCCHHHcCCceEEEecC-CCceEEEEEE-EEECc-EE
Confidence 65 3689999999999 69999999985 358999999999764 7899997 5789999999 99999 33
Q ss_pred ecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCccccc-CCCCceeccCCCccCCCceEEEEECCCcE
Q 011500 294 NLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTV-HDEYTCFQYSESVDEGFPNVTFHFENSVS 372 (484)
Q Consensus 294 ~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~-~~~~~C~~~~~~~~~~~p~i~f~f~gg~~ 372 (484)
. .+..+|+||||+++++|++++++|.+++++... ..+ .+.++|+ . ..+|+|+|+| +|.+
T Consensus 330 -~--------~~~~aIiDSGTsl~~lP~~~~~~l~~~i~~~~~----~~g~~~~v~C~-----~-~~~P~itf~f-gg~~ 389 (453)
T 2bju_A 330 -L--------EKANCIVDSGTSAITVPTDFLNKMLQNLDVIKV----PFLPFYVTLCN-----N-SKLPTFEFTS-ENGK 389 (453)
T ss_dssp -E--------EEEEEEECTTCCSEEECHHHHHHHTTTSSCEEC----TTSSCEEEETT-----C-TTCCCEEEEC-SSCE
T ss_pred -e--------ccccEEEcCCCCeEecCHHHHHHHHHHhCCccc----CCCceEEEecC-----C-CCCCcEEEEE-CCEE
Confidence 1 246799999999999999999999988765321 111 2334563 3 5689999999 8999
Q ss_pred EEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 373 LKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 373 ~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++|||++|+++.. +..|+ +|...+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 390 ~~l~~~~yi~~~~~~g~~~C~~~~~~~~~----~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~ 450 (453)
T 2bju_A 390 YTLEPEYYLQHIEDVGPGLCMLNIIGLDF----PVPTFILGDPFMRKYFTVFDYDNHSVGIALAK 450 (453)
T ss_dssp EEECHHHHEEECTTTSTTEEEECEEECCC----SSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred EEECHHHhEeecccCCCceEEEEEEeCCC----CCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence 9999999999873 35897 7876542 13589999999999999999999999999975
No 29
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2
Probab=100.00 E-value=3.2e-54 Score=426.57 Aligned_cols=296 Identities=20% Similarity=0.320 Sum_probs=242.1
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+|| ||++.|+|||||+++||+|..|..|.- ..++.|||++|+ ++.
T Consensus 12 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c-----~~~~~y~~~~Ss-~~~------------------ 65 (325)
T 1ibq_A 12 NDEEYLTPVTVG--KSTLHLDFDTGSADLWVFSDELPSSEQ-----TGHDLYTPSSSA-TKL------------------ 65 (325)
T ss_dssp TTSCEEEEEEEB--TEEEEEEEETTCCCEEEECTTSCHHHH-----TTSCCCBCCSSC-EEC------------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCccceEeeCCCCcccc-----CCCCCCCchhcC-Ccc------------------
Confidence 578899999999 899999999999999999999986632 234799999998 443
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS--- 228 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 228 (484)
+.|.|.+.|++|+.+.|.+++|+|+|++..+ +++.|||+...++.+. .....+||||||++..
T Consensus 66 ----~~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~ 131 (325)
T 1ibq_A 66 ----SGYSWDISYGDGSSASGDVYRDTVTVGGVTT--------NKQAVEAASKISSEFV--QDTANDGLLGLAFSSINTV 131 (325)
T ss_dssp ----TTCBEEEECSSSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--TSTTCCEEEECSCGGGCCC
T ss_pred ----CCCEEEEEeCCCCEEEEEEEEeEEEECCEEE--------cceEEEEEEecCcccc--ccCCCceEEEeCccccccc
Confidence 1379999999999889999999999987543 3899999998765442 2346899999999653
Q ss_pred ------cHHHHHHhcCCCCcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCCc
Q 011500 229 ------SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPTD 298 (484)
Q Consensus 229 ------s~~~~L~~~g~i~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~ 298 (484)
+++++|+++ +.+++||+||.+ +.+|.|+|||+|++ ++.|+|+.....+|.|++++|+|+++.+.
T Consensus 132 ~p~~~~~~~~~l~~~-i~~~~FS~~l~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~~~~~---- 205 (325)
T 1ibq_A 132 QPKAQTTFFDTVKSQ-LDSPLFAVQLKH-DAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSS---- 205 (325)
T ss_dssp BSSCCCCHHHHHGGG-SSSSEEEEEEET-TEEEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEECEEEETTSCCB----
T ss_pred CcCCCCCHHHHHHHh-cCCcEEEEEecC-CCCceEEECCcChhhccCceEEEEcCCCCceEEEEECcEEECCeecc----
Confidence 478999987 337999999987 46899999999975 48899998667899999999999998652
Q ss_pred ccccCCCCcEEEccccceeecChhhHHHHHHHHH-hhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 299 VFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKII-SQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 299 ~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~-~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.....+|+||||+++++|++++++|++++. +... .....+.++|+ ..+|+|+|+| +|++++||+
T Consensus 206 ----~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~~a~~~---~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~i~~ 270 (325)
T 1ibq_A 206 ----SSGFSAIADTGTTLILLDDEIVSAYYEQVSGAQES---YEAGGYVFSCS-------TDLPDFTVVI-GDYKAVVPG 270 (325)
T ss_dssp ----SCCEEEEECTTCCSEEECHHHHHHHHTTSTTCBCC---SSSSSCEEETT-------CCCCCEEEEE-TTEEEEECH
T ss_pred ----CCCceEEEeCCCCcEeCCHHHHHHHHHhCCCceEc---CcCCeEEEEcC-------CCCCcEEEEE-CCEEEEECH
Confidence 235679999999999999999999999884 3322 11223445674 4689999999 999999999
Q ss_pred CeeeEEc---CCeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 378 HEYLFPF---EDLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 378 ~~y~~~~---~~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++|+++. +...|++ |+... +.+.||||++|||++|+|||++|+|||||+++
T Consensus 271 ~~~~~~~~~~~~~~C~~~i~~~~-----~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~ 325 (325)
T 1ibq_A 271 KYINYAPVSTGSSTCYGGIQSNS-----GLGLSILGDVFLKSQYVVFNSEGPKLGFAAQA 325 (325)
T ss_dssp HHHEEEESSTTCSEEEESEEECT-----TTCSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHhcccccCCCCCeEEEEEEcCC-----CCCceEEChHHhcCEEEEEECCCCEEEeeeCC
Confidence 9999875 2378974 66542 24679999999999999999999999999863
No 30
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*
Probab=100.00 E-value=3.4e-54 Score=425.85 Aligned_cols=294 Identities=21% Similarity=0.303 Sum_probs=240.7
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+|| ||++.|+|||||+++||+|..|..|.- ..++.|||++|+ ++..
T Consensus 13 ~~~~Y~~~i~iG--~q~~~v~~DTGSs~lWv~~~~C~~~~c-----~~~~~y~~~~Ss-~~~~----------------- 67 (323)
T 1izd_A 13 NDEEYITQVTVG--DDTLGLDFDTGSADLWVFSSQTPSSER-----SGHDYYTPGSSA-QKID----------------- 67 (323)
T ss_dssp GGCCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHH-----TTCCCBCCCTTC-EEEE-----------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEcCCCcceEEecCCCCcccc-----cCCCCCCccccC-CccC-----------------
Confidence 567899999999 899999999999999999999986532 234699999998 5532
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC---
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS--- 228 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~--- 228 (484)
.|.|.+.|++|+.+.|.+++|+|+|++.++ +++.|||++..++.+. .....+||||||++..
T Consensus 68 -----~~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~ 132 (323)
T 1izd_A 68 -----GATWSISYGDGSSASGDVYKDKVTVGGVSY--------DSQAVESAEKVSSEFT--QDTANDGLLGLAFSSINTV 132 (323)
T ss_dssp -----EEEEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--HCTTCCEEEECSCGGGCCC
T ss_pred -----CCeEEEEcCCCCeEEEEEEEEEEEECCEEE--------CceEEEEEEecccccc--ccCCCceEEecCccccccc
Confidence 279999999999889999999999987543 3899999998765432 2246799999999643
Q ss_pred ------cHHHHHHhcCCCCcceeeeecCCCCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecCCc
Q 011500 229 ------SMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTD 298 (484)
Q Consensus 229 ------s~~~~L~~~g~i~~~FSl~l~~~~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~ 298 (484)
+++++|+++ +.+++||+||.+ +.+|.|+|||+|+++ +.|+|+...+.+|.|++++|+||+ .+.
T Consensus 133 ~p~~~~~~~~~l~~~-i~~~~FS~~L~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~~---- 205 (323)
T 1izd_A 133 QPTPQKTFFDNVKSS-LSEPIFAVALKH-NAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGS-DSS---- 205 (323)
T ss_dssp BSSCCCCHHHHHGGG-SSSSEEEEECCT-TSCEEEEESSCCTTSEEEEEEEEECBCTTSSCEEEESEEEETT-EEE----
T ss_pred CCCCCCCHHHHHHHh-ccCcEEEEEccC-CCCCEEEECCcCccccccceEEEECCCCCceEEEEECeEEECC-ccc----
Confidence 578999987 337999999987 468999999999875 789999866789999999999999 442
Q ss_pred ccccCCCCcEEEccccceeecChhhHHHHHHHHHh-hCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 299 VFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIIS-QQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 299 ~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~-~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.....+|+||||+++++|++++++|++++.+ ... ...+.+.++|+ +.+|+|+|+| +|++++||+
T Consensus 206 ----~~~~~aiiDSGTs~~~lp~~~~~~i~~~i~ga~~~---~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~i~~ 270 (323)
T 1izd_A 206 ----SDSITGIADTGTTLLLLDDSIVDAYYEQVNGASYD---SSQGGYVFPSS-------ASLPDFSVTI-GDYTATVPG 270 (323)
T ss_dssp ----CCCEEEEECTTCCSEEECHHHHHHHHTTSTTCEEE---TTTTEEEEETT-------CCCCCEEEEE-TTEEEEECH
T ss_pred ----CCCceEEEeCCCcceeCCHHHHHHHHHhCCCcEEc---CcCCEEEEECC-------CCCceEEEEE-CCEEEecCH
Confidence 2356799999999999999999999988742 221 11122334663 4689999999 999999999
Q ss_pred CeeeEEc-CCeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 378 HEYLFPF-EDLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 378 ~~y~~~~-~~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
++|+++. ++..|++ |.... +.+.||||++|||++|+|||++|+|||||++
T Consensus 271 ~~~~~~~~~~~~C~~~i~~~~-----~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~ 322 (323)
T 1izd_A 271 EYISFADVGNGQTFGGIQSNS-----GIGFSIFGDVFLKSQYVVFDASGPRLGFAAQ 322 (323)
T ss_dssp HHHEEEECSTTEEEESEEECT-----TTSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred HHeEEecCCCCeEEEEEEcCC-----CCCcEEEChHHhcCEEEEEECCCCEEEEeeC
Confidence 9999876 5678984 76543 2467999999999999999999999999986
No 31
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A
Probab=100.00 E-value=2.3e-53 Score=429.49 Aligned_cols=332 Identities=17% Similarity=0.312 Sum_probs=247.3
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPL 149 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~ 149 (484)
++.+.+|+++|+|||| |+|||||+++||+|.+|. +++.++|+++.|...+....
T Consensus 10 ~~~~~~Y~~~i~iGtP-----v~~DTGSs~lWv~c~~~~---------------------~~~~~~C~s~~C~~~~~~~~ 63 (381)
T 1t6e_X 10 DPATSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ---------------------PPAEIPCSSPTCLLANAYPA 63 (381)
T ss_dssp CTTTCCEEEEEETTEE-----EEEETTCCCEEECCCTTC---------------------CCCCCBTTSHHHHHHHSSCC
T ss_pred cCCCcEEEEEEeCCCE-----EEEECCCCceEEeCCCCC---------------------CCCccCCCCchhccccCCCC
Confidence 4568899999999998 999999999999987641 13344555555543322112
Q ss_pred CCCCC--------CCCC-ceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCccccee
Q 011500 150 TDCTA--------NTSC-PYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGI 220 (484)
Q Consensus 150 ~~c~~--------~~~~-~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GI 220 (484)
..|.. ++.| .|.++|++|+.+.|.+++|+|++++............++.|||+..+.... ....+|||
T Consensus 64 ~sc~~~~~~~~~~~~~c~~f~i~YgdGs~~~G~l~~Dtv~ig~~~g~~~v~~~~~~~~Fg~~~~~~~~~---~~~~~dGI 140 (381)
T 1t6e_X 64 PGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPSKLLAS---LPRGSTGV 140 (381)
T ss_dssp TTCCCCCC------CBCEECCBCTTTCCBCCEEEEEEEEEEEEESSSSEEEEEEEEEEEEECCGGGGTT---SCTTEEEE
T ss_pred CCCCCccCCcCcCCCccccccccccCCceeeEEEEEEEEEeeccCCCccccceeeeeEeecCcccccCC---CCCCCceE
Confidence 23431 2346 599999999977999999999998743211111001124689998763211 12468999
Q ss_pred eecCCCCCcHHHHHHhcCCCCcceeeeecCCCCcceEEeCCcCC------CCceEeeCCCC--CCceEEEEeEEEEccEE
Q 011500 221 IGFGKSNSSMISQLASSGGVRKMFAHCLDGINGGGIFAIGHVVQ------PEVNKTPLVPN--QPHYSINMTAVQVGLDF 292 (484)
Q Consensus 221 lGLg~~~~s~~~~L~~~g~i~~~FSl~l~~~~~~G~l~~Ggid~------~~~~~~p~~~~--~~~w~v~l~~i~v~~~~ 292 (484)
||||++..+++.||.++++++++||+||.+. .+|.|+||++|. .++.|+|++.+ ..+|+|++++|+||++.
T Consensus 141 lGLg~~~~s~~~ql~~~~~~~~~FS~~L~~~-~~G~l~fGg~~~~~~~~~g~l~~tPl~~~~~~~~y~v~l~~i~vg~~~ 219 (381)
T 1t6e_X 141 AGLANSGLALPAQVASAQKVANRFLLCLPTG-GPGVAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTR 219 (381)
T ss_dssp EECSSSTTSHHHHHHHHHTCCSEEEEECCSS-SCEEEEESCCSCSCHHHHTTCCEEECBCCTTCCSCEECEEEEEETTEE
T ss_pred EEeCCCcchhHHHHhhhcccCceEEEEeCCC-CCeeEEeCCcccccccccCcceeeccccCCCCcceEEEEEEEEEcCEE
Confidence 9999999999999999987789999999874 789999999875 35899999854 25788999999999998
Q ss_pred eecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCC-------CCcc--cccCCCCceeccCCCc----cCC
Q 011500 293 LNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQP-------DLKV--HTVHDEYTCFQYSESV----DEG 359 (484)
Q Consensus 293 ~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~-------~~~~--~~~~~~~~C~~~~~~~----~~~ 359 (484)
+.++...+. ..++|+||||+++++|+++|++|.+++.+... .... ........||..++.. ...
T Consensus 220 ~~~~~~~~~---~~~~iiDTGTtl~~lp~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 296 (381)
T 1t6e_X 220 VPVPEGALA---TGGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYA 296 (381)
T ss_dssp CCCCTTCSC---TTCEEECSSCSSEEECHHHHHHHHHHHHHHHHHC-------CCEECCCTTCSCEEEGGGCCEETTEEC
T ss_pred ecCCHHHcc---CCCEEEECCCccEEeCHHHHHHHHHHHHHhhcccccccccccccCCCCCCCCccCCCCCCcccccCCc
Confidence 876655443 46799999999999999999999999876542 1111 1122346899766432 136
Q ss_pred CceEEEEECCCcEEEECCCeeeEEc-CCeEEEEEeccCccc--CCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCC
Q 011500 360 FPNVTFHFENSVSLKVYPHEYLFPF-EDLWCIGWQNSGMQS--RDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNC 434 (484)
Q Consensus 360 ~p~i~f~f~gg~~~~l~p~~y~~~~-~~~~C~~i~~~~~~~--~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c 434 (484)
+|+|+|+|+||++++||+++|+++. ++..|++|+...... .+..+.||||+.|||++|+|||++|+|||||+++.
T Consensus 297 ~P~i~f~f~gg~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~~~~~ILGd~fl~~~yvvfD~~~~riGfA~~~~ 374 (381)
T 1t6e_X 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGFSRLPH 374 (381)
T ss_dssp CCCEEEEETTSCEEEECHHHHEEEEETTEEEESEEECCCCC------CSEEECHHHHTTEEEEEETTTTEEEEEECCT
T ss_pred CCeEEEEECCCcEEEeCCCeEEEEcCCCeEEEEEEcCCCcccccCCCceEEEChHHhCCcEEEEECCCCEEEEecccC
Confidence 8999999955799999999999986 567999988754210 01125799999999999999999999999999764
No 32
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=100.00 E-value=3.1e-54 Score=426.30 Aligned_cols=294 Identities=21% Similarity=0.361 Sum_probs=239.6
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTD 151 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~ 151 (484)
.+..|+++|+|| ||++.|+|||||+++||+|.+|..|.. ..++.|||++|+ ++...
T Consensus 13 ~~~~Y~~~i~iG--~Q~~~v~~DTGSs~lWv~~~~C~~~~c-----~~~~~y~~~~Ss-~~~~~---------------- 68 (323)
T 1bxo_A 13 NDEEYITPVTIG--GTTLNLNFDTGSADLWVFSTELPASQQ-----SGHSVYNPSATG-KELSG---------------- 68 (323)
T ss_dssp GGSCEEEEEEET--TEEEEEEEETTCCCEEECBTTSCHHHH-----TTSCCBCHHHHC-EEEEE----------------
T ss_pred CCCEEEEEEEEC--CEEEEEEEeCCCcceEEecCCCCchhc-----cCCCCCCcccCC-cccCC----------------
Confidence 567899999999 899999999999999999999986632 234799999998 65422
Q ss_pred CCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCC----
Q 011500 152 CTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSN---- 227 (484)
Q Consensus 152 c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~---- 227 (484)
|.|.+.|++|+.+.|.+++|+|+|++.++ +++.|||++..++.+. .....+||||||++.
T Consensus 69 ------~~~~i~Yg~Gs~~~G~~~~D~v~ig~~~v--------~~~~fg~~~~~~~~~~--~~~~~~GilGLg~~~~s~~ 132 (323)
T 1bxo_A 69 ------YTWSISYGDGSSASGNVFTDSVTVGGVTA--------HGQAVQAAQQISAQFQ--QDTNNDGLLGLAFSSINTV 132 (323)
T ss_dssp ------EEEEEECTTSCEEEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--TCTTCSEEEECSCGGGCCC
T ss_pred ------CeEEEEeCCCCeEEEEEEEEEEEECCEEE--------CcEEEEEEEecCcccc--cCCCCceEEEeCccccccc
Confidence 79999999999889999999999987643 3899999998765442 224689999999964
Q ss_pred -----CcHHHHHHhcCCC-CcceeeeecCCCCcceEEeCCcCCC----CceEeeCCCCCCceEEEEeEEEEccEEeecCC
Q 011500 228 -----SSMISQLASSGGV-RKMFAHCLDGINGGGIFAIGHVVQP----EVNKTPLVPNQPHYSINMTAVQVGLDFLNLPT 297 (484)
Q Consensus 228 -----~s~~~~L~~~g~i-~~~FSl~l~~~~~~G~l~~Ggid~~----~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~ 297 (484)
.+++++|+++ + +++||+||.+ +.+|.|+|||+|++ ++.|+|+..++.+|.|++++|+|++ ..
T Consensus 133 ~~~~~~~~~~~l~~~--i~~~~FS~~L~~-~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~w~v~l~~i~v~~-~~---- 204 (323)
T 1bxo_A 133 QPQSQTTFFDTVKSS--LAQPLFAVALKH-QQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTAGS-QS---- 204 (323)
T ss_dssp BSSCCCCHHHHHGGG--BSSSEEEEECCS-SSCEEEEESSCCGGGBSSCCEEEECBCTTSSCEEEEEEEEETT-EE----
T ss_pred ccCCCCCHHHHHHHh--cCCcEEEEEEeC-CCCceEEEeCcChhhccCceEEEECCCCCCeEEEEEeeEEECC-cc----
Confidence 3589999987 6 6999999987 56899999999965 4899999866789999999999998 21
Q ss_pred cccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEEEECCCcEEEECC
Q 011500 298 DVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYP 377 (484)
Q Consensus 298 ~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p 377 (484)
.....+|+||||+++++|++++++|++++.+... ....+.+.++|+ ..+|+|+|+| +|++++||+
T Consensus 205 -----~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~~a~~--~~~~g~~~~~C~-------~~~P~i~f~f-gg~~~~l~~ 269 (323)
T 1bxo_A 205 -----GDGFSGIADTGTTLLLLDDSVVSQYYSQVSGAQQ--DSNAGGYVFDCS-------TNLPDFSVSI-SGYTATVPG 269 (323)
T ss_dssp -----EEEEEEEECTTCSSEEECHHHHHHHHTTSTTCEE--ETTTTEEEECTT-------CCCCCEEEEE-TTEEEEECH
T ss_pred -----CCCceEEEeCCCCceeCCHHHHHHHHHhCCCceE--cCcCCEEEEECC-------CCCceEEEEE-CCEEEEECH
Confidence 1246799999999999999999999998843211 011122335663 4689999999 999999999
Q ss_pred CeeeEEc--CCeEEEE-EeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCC
Q 011500 378 HEYLFPF--EDLWCIG-WQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 378 ~~y~~~~--~~~~C~~-i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~ 433 (484)
++|+++. +...|+. |.... +.+.||||++|||++|+|||++|+|||||++.
T Consensus 270 ~~~~~~~~~~~~~C~~~i~~~~-----~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~a 323 (323)
T 1bxo_A 270 SLINYGPSGDGSTCLGGIQSNS-----GIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQA 323 (323)
T ss_dssp HHHEEEECSSSSCEEESEEECT-----TCSSEEECHHHHTTEEEEEETTTTEEEEEEBC
T ss_pred HHeEEeccCCCCeEEEEEECCC-----CCCcEEEChHHHcCEEEEEECCCCEEEEecCC
Confidence 9999876 3368974 66543 24679999999999999999999999999863
No 33
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=100.00 E-value=1e-52 Score=418.73 Aligned_cols=291 Identities=20% Similarity=0.318 Sum_probs=236.4
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCCCCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCCCCCCCC
Q 011500 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCKECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYGGPLTDC 152 (484)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~c 152 (484)
+..|+++|+||||||++.|+|||||+++||+|. +.|||++|+++..
T Consensus 11 ~~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~---------------~~y~~s~Ss~~~~------------------- 56 (340)
T 1wkr_A 11 LVDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD---------------KSYVKTSTSSATS------------------- 56 (340)
T ss_dssp SSCEEEEEEETTTTEEEEEEEETTCCCCEECSS---------------SCCCCCTTCEEEE-------------------
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCChhheecCC---------------CccCCcCCccccC-------------------
Confidence 568999999999999999999999999999863 3799998886544
Q ss_pred CCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCCCC----
Q 011500 153 TANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS---- 228 (484)
Q Consensus 153 ~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~---- 228 (484)
|.|.+.|++|+ +.|.+++|+|+|++.. ++++.|||+....+ + ...+||||||++..
T Consensus 57 -----~~~~i~Yg~Gs-~~G~~~~Dtv~~g~~~--------v~~~~fg~~~~~~~-~-----~~~~GilGLg~~~~s~~~ 116 (340)
T 1wkr_A 57 -----DKVSVTYGSGS-FSGTEYTDTVTLGSLT--------IPKQSIGVASRDSG-F-----DGVDGILGVGPVDLTVGT 116 (340)
T ss_dssp -----EEEEEECSSCE-EEEEEEEEEEEETTEE--------EEEEEEEEEEEEES-C-----TTCSEEEECSCGGGGTTS
T ss_pred -----ceEEEEECCcE-EEEEEEEEEEEECCEE--------EcceEEEEEEccCC-C-----cCCCcEEECCcccccccc
Confidence 79999999998 8999999999998754 34899999998765 3 14899999998643
Q ss_pred ----------cHHHHHHhcCCC-CcceeeeecCC----CCcceEEeCCcCCC----CceEeeCCCC---CCceEEEEeEE
Q 011500 229 ----------SMISQLASSGGV-RKMFAHCLDGI----NGGGIFAIGHVVQP----EVNKTPLVPN---QPHYSINMTAV 286 (484)
Q Consensus 229 ----------s~~~~L~~~g~i-~~~FSl~l~~~----~~~G~l~~Ggid~~----~~~~~p~~~~---~~~w~v~l~~i 286 (484)
+++++|++||+| +++||+||.+. ..+|.|+|||+|++ ++.|+|++.. ..+|.|. ++|
T Consensus 117 ~~~~~~~~~~~~~~~l~~~g~i~~~~FS~~l~~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~~~w~v~-~~i 195 (340)
T 1wkr_A 117 LSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSI 195 (340)
T ss_dssp EESCTTCCCCCHHHHHHHTTSSSSSEEEEECCCCSSSSEEEEEEEESSCCGGGCSSCCEEEECCSSTTGGGSSEEE-EEE
T ss_pred ccccccccCCCHHHHHHHcCCCCCCEEEEEecCCCCCCCCCcEEEEcccChhhcccceEEEECccCCCCcceEEEE-eeE
Confidence 579999999999 69999999863 34799999999965 5899999854 5789999 999
Q ss_pred EEcc-EEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCcccccCCCCceeccCCCccCCCceEEE
Q 011500 287 QVGL-DFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLKVHTVHDEYTCFQYSESVDEGFPNVTF 365 (484)
Q Consensus 287 ~v~~-~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i~f 365 (484)
+|++ +.+.. ...+||||||+++++|.+++++|.+++++.+.. ....+.++| .....+|+|+|
T Consensus 196 ~v~~~~~l~~---------~~~aiiDSGTt~~~lP~~~~~~l~~~~~a~~~~---~~g~~~~~C-----~~~~~~p~i~f 258 (340)
T 1wkr_A 196 RYGSSTSILS---------STAGIVDTGTTLTLIASDAFAKYKKATGAVADN---NTGLLRLTT-----AQYANLQSLFF 258 (340)
T ss_dssp EETTTEEEEE---------EEEEEECTTBCSEEECHHHHHHHHHHHTCEECT---TTSSEEECH-----HHHHTCCCEEE
T ss_pred EECCCeEccC---------CCeEEEeCCcccccCCHHHHHHHHHhhCCEEcC---CCCeEEeec-----cccccCCcEEE
Confidence 9998 76631 246999999999999999999998888765421 111233456 33356899999
Q ss_pred EECCCcEEEECCCeeeEEcC--------CeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeCCCCC
Q 011500 366 HFENSVSLKVYPHEYLFPFE--------DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEYNCSS 436 (484)
Q Consensus 366 ~f~gg~~~~l~p~~y~~~~~--------~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~~c~~ 436 (484)
+| +|.+++|+|++|+++.. ...|+ ++........ ....||||++|||++|+|||++|+|||||+++|++
T Consensus 259 ~f-~g~~~~i~~~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~-~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~~ 336 (340)
T 1wkr_A 259 TI-GGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSG-EGLDFINGLTFLERFYSVYDTTNKRLGLATTSFTT 336 (340)
T ss_dssp EE-TTEEEEECTGGGBCCGGGGGGGTCCSSCEEBCEEECSSCTT-SSCCEEECHHHHTSEEEEEETTTTEEEEEECTTTT
T ss_pred EE-CCEEEEEcHHHhccccccccccCCCCceEEEEEecCCCCCC-CCcceEeChHhhhheEEEEeCCCCeEEEEecCCCC
Confidence 99 89999999999998752 24564 6665332111 12469999999999999999999999999999986
Q ss_pred C
Q 011500 437 S 437 (484)
Q Consensus 437 ~ 437 (484)
.
T Consensus 337 ~ 337 (340)
T 1wkr_A 337 A 337 (340)
T ss_dssp C
T ss_pred C
Confidence 3
No 34
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=100.00 E-value=2.2e-42 Score=326.35 Aligned_cols=217 Identities=28% Similarity=0.401 Sum_probs=185.6
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC---CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK---ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVYG 146 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~---~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~ 146 (484)
++.+..|+++|+||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+||+...
T Consensus 9 n~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~-------~~~y~~~~SsT~~~~~----------- 70 (239)
T 1b5f_A 9 NDRDTSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRA-------HSMYESSDSSTYKENG----------- 70 (239)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHT-------SCCBCGGGCTTCEEEE-----------
T ss_pred ecCCCEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCC-------CCCCCCccCCCeeeCC-----------
Confidence 456789999999999999999999999999999999986 4544 4699999999999865
Q ss_pred CCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEecccCCccccccCcceEEeeeeeccCCCCCCCCcccceeeecCCC
Q 011500 147 GPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDKVSGDLQTTSTNGSLIFGCGARQSGNLDSTNEEALDGIIGFGKS 226 (484)
Q Consensus 147 ~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~ 226 (484)
|.|.+.|++|+ +.|.+++|+|+|++..+ +++.|||+....+..+ ....++||||||++
T Consensus 71 -----------~~~~i~Yg~Gs-~~G~~~~D~v~~g~~~v--------~~~~fg~~~~~~~~~f--~~~~~~GilGLg~~ 128 (239)
T 1b5f_A 71 -----------TFGAIIYGTGS-ITGFFSQDSVTIGDLVV--------KEQDFIEATDEADNVF--LHRLFDGILGLSFQ 128 (239)
T ss_dssp -----------EEEEEECSSCE-EEEEEEEEEEEETTEEE--------EEEEEEEEEEECHHHH--TTCSCCEEEECSCC
T ss_pred -----------cEEEEEECCCc-EEEEEEEEEEEECCcEE--------ccEEEEEEEeccCccc--cccCcceEEecCcc
Confidence 68999999998 89999999999987543 3899999988654211 23568999999998
Q ss_pred CCc--HHHHHHhcCCC-CcceeeeecCC---CCcceEEeCCcCCCC----ceEeeCCCCCCceEEEEeEEEEccEEeecC
Q 011500 227 NSS--MISQLASSGGV-RKMFAHCLDGI---NGGGIFAIGHVVQPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLP 296 (484)
Q Consensus 227 ~~s--~~~~L~~~g~i-~~~FSl~l~~~---~~~G~l~~Ggid~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~ 296 (484)
..+ ++.+|++||+| +++||+||.+. ..+|.|+||++|+++ +.|+|+. .+.+|.|.+++|.|+++.+.++
T Consensus 129 ~~s~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~~~ 207 (239)
T 1b5f_A 129 TISVPVWYNMLNQGLVKERRFSFWLNRNVDEEEGGELVFGGLDPNHFRGDHTYVPVT-YQYYWQFGIGDVLIGDKSTGFC 207 (239)
T ss_dssp SSSCCHHHHHHHTTCCSSSEEEEEECCSCSSSCCEEEEETSCCGGGEEEEEEEEEEE-EETTEEEEECCEEETTEECCTT
T ss_pred ccccHHHHHHHHCCCCCCCEEEEEEeCCCCCCCCeEEEECCcChhhccCceEEEEcc-cCCeEEEEeeEEEECCEEeccc
Confidence 865 78899999999 69999999874 357999999999864 7899997 5689999999999999987543
Q ss_pred CcccccCCCCcEEEccccceeecChhhHHHHHHHHHh
Q 011500 297 TDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIIS 333 (484)
Q Consensus 297 ~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~ 333 (484)
. ....++|||||+++++|++++++|.+++++
T Consensus 208 ~------~~~~aiiDTGTt~~~lP~~~~~~i~~~iga 238 (239)
T 1b5f_A 208 A------PGCQAFADSGTSLLSGPTAIVTQINHAIGA 238 (239)
T ss_dssp T------TCEEEEECTTCSSEEECHHHHHHHHHHTTC
T ss_pred C------CCCEEEEecCcchhhCCHHHHHHHHHHhCC
Confidence 2 256799999999999999999999998864
No 35
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=100.00 E-value=1.4e-37 Score=294.37 Aligned_cols=219 Identities=18% Similarity=0.315 Sum_probs=177.9
Q ss_pred CcceEEeeeeeccCCCCCCCCcccceeeecCCCCC------cHHHHHHhcCCC-CcceeeeecCCC-C--cceEEeCCcC
Q 011500 194 NGSLIFGCGARQSGNLDSTNEEALDGIIGFGKSNS------SMISQLASSGGV-RKMFAHCLDGIN-G--GGIFAIGHVV 263 (484)
Q Consensus 194 ~~~~~fg~~~~~~~~~~~~~~~~~~GIlGLg~~~~------s~~~~L~~~g~i-~~~FSl~l~~~~-~--~G~l~~Ggid 263 (484)
++++.|||++.+++.+. .....|||||||++.. +++++|++||+| +++||+||.+.. . +|.|+|||+|
T Consensus 5 v~~~~Fg~~~~~~~~~f--~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d 82 (241)
T 1lya_B 5 VERQVFGEATKQPGITF--IAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTD 82 (241)
T ss_dssp EEEEEEEEEEECCSSTT--TSCSSSEEEECSCGGGCGGGCCCHHHHHHHTTCSSSSEEEEEECSSTTCSSCEEEEETSCC
T ss_pred ECCeEEEEEEEccCCcc--ccccCCEEEECCcchhhccCCChHHHHHHHCCCCCCCEEEEEEeCCCCCCCCcEEEECCcC
Confidence 44899999999876432 4567899999999753 589999999999 699999999852 2 7999999999
Q ss_pred CCC----ceEeeCCCCCCceEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHHHHhhCCCCc
Q 011500 264 QPE----VNKTPLVPNQPHYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSKIISQQPDLK 339 (484)
Q Consensus 264 ~~~----~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~i~~~~~~~~ 339 (484)
+++ +.|+|+. .+.+|.|.+++|+|+++.+. ......+++||||+++++|.+++++|.+++++...
T Consensus 83 ~~~~~g~l~~~p~~-~~~~~~v~l~~i~v~~~~~~-------~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~--- 151 (241)
T 1lya_B 83 SKYYKGSLSYLNVT-RKAYWQVHLDQVEVASGLTL-------CKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPL--- 151 (241)
T ss_dssp GGGEEEEEEEEECS-SBTTBEEEEEEEEETTSCEE-------STTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEE---
T ss_pred HHHcCCceEEEECc-cccEEEEEEeEEEECCeeEe-------ccCCCEEEEECCCccccCCHHHHHHHHHHhCCeec---
Confidence 864 7899998 57899999999999997642 12356799999999999999999999999966532
Q ss_pred ccccCCCCceeccCCCccCCCceEEEEECCCcEEEECCCeeeEEcC---CeEEE-EEeccCcccCCCCCeeeechhhhce
Q 011500 340 VHTVHDEYTCFQYSESVDEGFPNVTFHFENSVSLKVYPHEYLFPFE---DLWCI-GWQNSGMQSRDRKNMTLLGDLVLSN 415 (484)
Q Consensus 340 ~~~~~~~~~C~~~~~~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~~---~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~ 415 (484)
..+.+.++|+ ....+|+|+|+| +|++++|||++|+++.. +..|+ +|...+.... ..+.||||++|||+
T Consensus 152 -~~g~~~~~C~-----~~~~~p~i~f~f-~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~-~~~~~ilG~~fl~~ 223 (241)
T 1lya_B 152 -IQGEYMIPCE-----KVSTLPAITLKL-GGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPP-SGPLWILGDVFIGR 223 (241)
T ss_dssp -ETTEEEEEGG-----GGGGSCCEEEEE-TTEEEEECTTTSEEEETTTTSSEEEESEEECCCCTT-TCCCEEECHHHHTT
T ss_pred -cCCcEEEECC-----CCccCCeEEEEE-CCEEEEECHHHhEEEccCCCCCeeEEEEEecccCCC-CCCeEEechHHhcc
Confidence 1222345664 345689999999 89999999999999873 56897 6877543211 24679999999999
Q ss_pred eEEEEeCCCCEEEEEeCC
Q 011500 416 KLVLYDLENQVIGWTEYN 433 (484)
Q Consensus 416 ~y~vfD~~~~rIGfA~~~ 433 (484)
+|+|||++|+|||||+++
T Consensus 224 ~y~vfD~~~~~igfA~~~ 241 (241)
T 1lya_B 224 YYTVFDRDNNRVGFAEAA 241 (241)
T ss_dssp EEEEEETTTTEEEEEEEC
T ss_pred eEEEEECCCCEEEEEEcC
Confidence 999999999999999864
No 36
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=99.87 E-value=2e-22 Score=161.05 Aligned_cols=84 Identities=39% Similarity=0.584 Sum_probs=76.0
Q ss_pred cCCcccEEEEEEeCCCCceEEEEEEcCCCceeEeCCCCC----CCCCcCCCCccCCccCCCCCCccceecCCCcccCCCC
Q 011500 70 PDGVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCIQCK----ECPRRSSLGIELTLYDIKDSSTGKFVTCDQEFCHGVY 145 (484)
Q Consensus 70 ~~~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~c~----~C~~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~ 145 (484)
++.+..|+++|.||||||++.|+|||||+++||+|..|. .|.. ++.|||++|+||+...
T Consensus 9 n~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~-------~~~y~p~~SsT~~~~~---------- 71 (97)
T 1lya_A 9 NYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWI-------HHKYNSDKSSTYVKNG---------- 71 (97)
T ss_dssp EETTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHT-------SCCBCGGGCTTCEEEE----------
T ss_pred ECCCCeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCC-------CCCCCchhCCCceeCC----------
Confidence 356789999999999999999999999999999999886 4654 4699999999999976
Q ss_pred CCCCCCCCCCCCCceeEEeCCCCcEeEEEEEEEEEEec
Q 011500 146 GGPLTDCTANTSCPYLEIYGDGSSTTGYFVQDVVQYDK 183 (484)
Q Consensus 146 ~~~~~~c~~~~~~~~~~~Y~~gs~~~G~~~~D~v~ig~ 183 (484)
|.|.+.|++|+ +.|.+++|+|+|++
T Consensus 72 ------------~~~~i~Yg~Gs-~~G~~~~Dtv~i~g 96 (97)
T 1lya_A 72 ------------TSFDIHYGSGS-LSGYLSQDTVSVPC 96 (97)
T ss_dssp ------------EEEEEECSSCE-EEEEEEEEEEEESC
T ss_pred ------------CcEEEEECCcE-EEEEEEEEEEEECC
Confidence 69999999999 89999999999975
No 37
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=99.71 E-value=1.3e-17 Score=130.74 Aligned_cols=76 Identities=22% Similarity=0.467 Sum_probs=63.3
Q ss_pred CccCCCceEEEEECCCcEEEECCCeeeEEc---CCeEEE-EEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEE
Q 011500 355 SVDEGFPNVTFHFENSVSLKVYPHEYLFPF---EDLWCI-GWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWT 430 (484)
Q Consensus 355 ~~~~~~p~i~f~f~gg~~~~l~p~~y~~~~---~~~~C~-~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA 430 (484)
+....+|+|+|+| +|++++|+|++|+++. +...|+ +|+..+.+ ...+.||||++|||++|+|||++|+|||||
T Consensus 8 ~~~~~~P~i~f~~-gg~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~~--~~~~~~ILGd~Fl~~~y~vfD~~~~riGfA 84 (87)
T 1b5f_B 8 NTLSSMPNVSFTI-GGKKFGLTPEQYILKVGKGEATQCISGFTAMDAT--LLGPLWILGDVFMRPYHTVFDYGNLLVGFA 84 (87)
T ss_dssp GGGGGCCCEEEEE-TTEEEEECHHHHEEEESCTTTCEEEESEEECCCB--SSSBEEEECHHHHTTEEEEEETTTTEEEEE
T ss_pred CCCCcCCcEEEEE-CCEEEEECHHHhEEEccCCCCCEEEEEEEECCCC--CCCCeEEechHHhccEEEEEECCCCEEEEE
Confidence 4445689999999 8999999999999986 236897 68775432 224689999999999999999999999999
Q ss_pred eCC
Q 011500 431 EYN 433 (484)
Q Consensus 431 ~~~ 433 (484)
+++
T Consensus 85 ~~~ 87 (87)
T 1b5f_B 85 EAA 87 (87)
T ss_dssp EEC
T ss_pred EcC
Confidence 863
No 38
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=95.14 E-value=0.02 Score=48.45 Aligned_cols=105 Identities=14% Similarity=0.057 Sum_probs=60.9
Q ss_pred EEEccEEeecCCcccccCCCCcEEEccccceeecChhhHHHHHHH-H-HhhCCCCcccccCCCCceeccCCCccCCCceE
Q 011500 286 VQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVYEPLVSK-I-ISQQPDLKVHTVHDEYTCFQYSESVDEGFPNV 363 (484)
Q Consensus 286 i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~~~l~~~-i-~~~~~~~~~~~~~~~~~C~~~~~~~~~~~p~i 363 (484)
+.|||+.+. +++|||++.+.++.+.++++--. . ...+. ....+.+...+ ....+..
T Consensus 29 ~~Ing~~v~-------------~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~--~~a~g~G~~~~-------~g~v~~~ 86 (148)
T 3s8i_A 29 CKVNGHPLK-------------AFVDSGAQMTIMSQACAERCNIMRLVDRRWA--GVAKGVGTQRI-------IGRVHLA 86 (148)
T ss_dssp EEETTEEEE-------------EEECTTCSSCEEEHHHHHHTTCGGGEEGGGC--EECCC---CEE-------EEEEEEE
T ss_pred EEECCEEEE-------------EEEeCCCCcEeeCHHHHHHcCCccccCccee--EEEEcCCccEE-------EEEEEEE
Confidence 448888775 89999999999999977765210 0 00000 00000011111 0113445
Q ss_pred EEEECCCcEEEECCCeeeEEcCCeEEEEEeccCcccCCCCCeeeechhhhceeEEEEeCCCCEEEEEeC
Q 011500 364 TFHFENSVSLKVYPHEYLFPFEDLWCIGWQNSGMQSRDRKNMTLLGDLVLSNKLVLYDLENQVIGWTEY 432 (484)
Q Consensus 364 ~f~f~gg~~~~l~p~~y~~~~~~~~C~~i~~~~~~~~~~~~~~iLG~~flr~~y~vfD~~~~rIGfA~~ 432 (484)
.+++ |+..+.. . +.+.... ....|||..||+.+-.+.|++++++-|...
T Consensus 87 ~I~I-g~~~~~~--~-----------~~Vle~~------~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~ 135 (148)
T 3s8i_A 87 QIQI-EGDFLQC--S-----------FSILEDQ------PMDMLLGLDMLRRHQCSIDLKKNVLVIGTT 135 (148)
T ss_dssp EEEE-TTEEEEE--E-----------EEEETTC------SSSEEECHHHHHHTTCEEETTTTEEECTTT
T ss_pred EEEE-CCEEEEE--E-----------EEEeCCC------CcCeeccHHHHHhCCEEEEcCCCEEEEccC
Confidence 6666 5543221 1 1222211 234799999999999999999999998653
No 39
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.047 Score=46.11 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=24.3
Q ss_pred eeeechhhhceeEEEEeCCCCEEEEE
Q 011500 405 MTLLGDLVLSNKLVLYDLENQVIGWT 430 (484)
Q Consensus 405 ~~iLG~~flr~~y~vfD~~~~rIGfA 430 (484)
..|||..||+++-...|+.++++-|.
T Consensus 109 d~iLG~d~L~~~~~~ID~~~~~l~l~ 134 (148)
T 2i1a_A 109 DVLIGLDMLKRHLACVDLKENVLRIA 134 (148)
T ss_dssp SEEECHHHHHHTTCEEETTTTEEEET
T ss_pred CeEecHHHHhhCCEEEECCCCEEEEc
Confidence 37999999999999999999999995
No 40
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=84.22 E-value=1.2 Score=34.53 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=24.3
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 77 ~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
++.+.|| +|.+++++|||.+++.+...+
T Consensus 10 ~vtvkI~--Gq~~eaLLDTGAD~TVl~~~~ 37 (99)
T 2hs1_A 10 LVTIKIG--GQLKEALLDTGADDTIIEEMS 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSEEESCCS
T ss_pred EEEEEEC--CEEEEEEeccCCCcEEEeccc
Confidence 5689999 699999999999999997543
No 41
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=83.38 E-value=1.1 Score=35.13 Aligned_cols=27 Identities=22% Similarity=0.179 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
-++.+.|| +|.+++++|||.+++.+..
T Consensus 9 P~v~v~I~--Gq~~e~LLDTGAD~TVl~~ 35 (104)
T 1fmb_A 9 PTTIVLIN--DTPLNVLLDTGADTSVLTT 35 (104)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred CEEEEEEC--CEEEEEEeccCCCcEEEcc
Confidence 46789999 6999999999999999973
No 42
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=80.54 E-value=2 Score=33.21 Aligned_cols=28 Identities=29% Similarity=0.191 Sum_probs=24.1
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 77 ~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
++.+.|| +|.++.++|||.+++.+...+
T Consensus 10 ~vti~I~--Gq~~e~LLDTGAD~TVl~~~~ 37 (99)
T 3ec0_A 10 VVTAYIE--GQPVEVLLDTGADDSIVAGIE 37 (99)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEESSCC
T ss_pred eEEEEEC--CEEEEEEEecCCCceEEcCcc
Confidence 5679999 699999999999999996543
No 43
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=79.75 E-value=1.6 Score=34.48 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=25.8
Q ss_pred EEEEEeC---CCCceEEEEEEcCCCceeEeCCCC
Q 011500 77 YAKIGIG---TPPKDYYVQVDTGSDIMWVNCIQC 107 (484)
Q Consensus 77 ~~~i~iG---tP~q~~~l~~DTGSs~~wv~~~~c 107 (484)
.+.|.|| +|+|.+..++|||-+++.+....+
T Consensus 12 lvtikI~~~~~~Gq~~eaLLDTGADdTVl~~~~l 45 (116)
T 3liy_A 12 VIKAQVDTQTSHPKTIEALLDTGADMTVIPIALF 45 (116)
T ss_dssp EEEEEEECSSSCCEEEEEEECTTBSSCEEEGGGS
T ss_pred eEEEEEccccCCCeEeEEEeccCCCccEEecccC
Confidence 4566776 789999999999999999987554
No 44
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=79.60 E-value=1.6 Score=36.39 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=27.1
Q ss_pred CcccEEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 72 GVGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 72 ~~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
..+.+++++.|+ ++++.+++|||++.+.+..
T Consensus 23 ~~~~~~v~v~In--G~~~~~LvDTGAs~s~is~ 53 (148)
T 2i1a_A 23 QVPMLYINIEIN--NYPVKAFVDTGAQTTIMST 53 (148)
T ss_dssp CCCCCEEEEEET--TEEEEEEECTTCSSCEEEH
T ss_pred ccceEEEEEEEC--CEEEEEEEECCCCccccCH
Confidence 456799999998 6899999999999998864
No 45
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=72.87 E-value=3.1 Score=33.15 Aligned_cols=26 Identities=27% Similarity=0.189 Sum_probs=22.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
=++ +.|| +|.++.++|||.+++.+..
T Consensus 15 P~v-ikI~--Gq~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 15 EIL-IFVN--GYPIKFLLDTGADITVLNR 40 (116)
T ss_dssp EEE-EEET--TEEEEEEECTTCSSCEEEG
T ss_pred CEE-EEEC--CEEEEEEecCCCCcEEEcc
Confidence 344 9999 6999999999999999975
No 46
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=69.79 E-value=3.7 Score=34.31 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=27.0
Q ss_pred cccEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011500 73 VGLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 73 ~~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~ 105 (484)
...|++++.|. ++++++++|||++.+.+...
T Consensus 22 ~~~l~v~~~In--g~~v~~LVDTGAs~s~Is~~ 52 (148)
T 3s8i_A 22 VTMLYINCKVN--GHPLKAFVDSGAQMTIMSQA 52 (148)
T ss_dssp CCCCEEEEEET--TEEEEEEECTTCSSCEEEHH
T ss_pred cCEEEEEEEEC--CEEEEEEEeCCCCcEeeCHH
Confidence 45799999998 69999999999999998753
No 47
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=66.78 E-value=5.7 Score=31.44 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=24.4
Q ss_pred EEEEEeCCCCceEEEEEEcCCCceeEeCCC
Q 011500 77 YAKIGIGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 77 ~~~i~iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
.+.+.|| +|.+..++|||-+++.+...+
T Consensus 11 ~vti~I~--Gq~~eaLLDTGADdTVi~~~~ 38 (114)
T 3sqf_A 11 SLTLWLD--DKMFTGLINTGADVTIIKLED 38 (114)
T ss_dssp EEEEEET--TEEEEEEECTTCSSCEEEGGG
T ss_pred eEEEEEC--CEEEEEEEccCCCceEEeccc
Confidence 5679999 699999999999999998654
No 48
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=59.36 E-value=11 Score=30.80 Aligned_cols=30 Identities=17% Similarity=0.071 Sum_probs=25.5
Q ss_pred ccEEEEEEeCCCCceEEEEEEcCCCceeEeCC
Q 011500 74 GLYYAKIGIGTPPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 74 ~~Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~~ 105 (484)
..-++.+.|+ +|.+.+++|||.+++.+...
T Consensus 21 ~RP~v~i~I~--G~~~~~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 21 PEPRITLKVG--GQPVTFLVDTGAQHSVLTQN 50 (132)
T ss_dssp CSSEEEEEET--TEEEEEEECTTCSSCEECSC
T ss_pred CCCEEEEEEC--CEEEEEEEeCCCCeEEEccc
Confidence 3457789999 69999999999999999753
No 49
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=52.29 E-value=12 Score=32.97 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.9
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
-.+.+.|| +|.+++++|||.+++.+..
T Consensus 9 P~vtv~I~--Gq~~e~LLDTGAD~TVl~~ 35 (203)
T 3ka2_A 9 PLVTIRIG--GQLKEALLDTGADDTVIEE 35 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CeEEEEEC--CEEEEEEEecCCCceEEec
Confidence 46789999 6999999999999999964
No 50
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=51.35 E-value=14 Score=29.67 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=19.3
Q ss_pred eCCCCceEEEEEEcCCCceeEeCCC
Q 011500 82 IGTPPKDYYVQVDTGSDIMWVNCIQ 106 (484)
Q Consensus 82 iGtP~q~~~l~~DTGSs~~wv~~~~ 106 (484)
|| +|.++.++|||-+++.+....
T Consensus 27 i~--gq~~eaLLDTGAD~TVl~~~~ 49 (124)
T 2rsp_A 27 QR--SVYITALLDSGADITIISEED 49 (124)
T ss_dssp CS--EEEEEEEECTTCSSCEEETTT
T ss_pred CC--CEEEEEEecCCCCcEEEeccc
Confidence 55 588899999999999998644
No 51
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=40.52 E-value=23 Score=26.86 Aligned_cols=15 Identities=20% Similarity=0.709 Sum_probs=13.8
Q ss_pred EEEccccceeecChh
Q 011500 308 TIIDSGTTLAYLPEM 322 (484)
Q Consensus 308 aiiDTGtt~~~lp~~ 322 (484)
++||||++.+.+|..
T Consensus 30 v~~DTGSs~lWv~~~ 44 (97)
T 1lya_A 30 VVFDTGSSNLWVPSI 44 (97)
T ss_dssp EEEETTCCCEEEEBT
T ss_pred EEEeCCCCceEEeEc
Confidence 899999999999865
No 52
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=32.75 E-value=24 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=25.6
Q ss_pred eEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecChhhH
Q 011500 279 YSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEMVY 324 (484)
Q Consensus 279 w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~~~ 324 (484)
|+=.+..++|+|+... +++|||+--+.+.....
T Consensus 6 ~~RP~v~v~I~Gq~~e-------------~LLDTGAD~TVl~~~~w 38 (104)
T 1fmb_A 6 EKRPTTIVLINDTPLN-------------VLLDTGADTSVLTTAHY 38 (104)
T ss_dssp SSCCEEEEEETTEEEE-------------EEECTTCSSCEEEHHHH
T ss_pred cCCCEEEEEECCEEEE-------------EEeccCCCcEEEccccC
Confidence 4434456889999764 89999999999987654
No 53
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=32.61 E-value=27 Score=26.80 Aligned_cols=30 Identities=13% Similarity=0.416 Sum_probs=23.9
Q ss_pred eEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecCh
Q 011500 279 YSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPE 321 (484)
Q Consensus 279 w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~ 321 (484)
|+=.+..++|+|+... +++|||+--+.+..
T Consensus 6 ~~rP~vtvkI~Gq~~e-------------aLLDTGAD~TVl~~ 35 (99)
T 2hs1_A 6 WKRPLVTIKIGGQLKE-------------ALLDTGADDTIIEE 35 (99)
T ss_dssp SSCCEEEEEETTEEEE-------------EEECTTCSSEEESC
T ss_pred cCCCEEEEEECCEEEE-------------EEeccCCCcEEEec
Confidence 4445566899999775 89999999998875
No 54
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=29.80 E-value=43 Score=29.31 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.7
Q ss_pred EEEEEEeCCCCceEEEEEEcCCCceeEeC
Q 011500 76 YYAKIGIGTPPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 76 Y~~~i~iGtP~q~~~l~~DTGSs~~wv~~ 104 (484)
=.+++.|| +|.++.++|||.+++.+..
T Consensus 113 P~~~iki~--Gq~~e~LlDTGAD~TVl~~ 139 (203)
T 3ka2_A 113 PLVTIRIG--GQLKEALLDTGADDTVIEE 139 (203)
T ss_dssp CEEEEEET--TEEEEEEECTTCSSCEECS
T ss_pred CcEEEEEC--CEEEeeeecccCCceeeec
Confidence 36789999 6999999999999999964
No 55
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=29.40 E-value=45 Score=27.05 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=21.7
Q ss_pred eEEEEccEEeecCCcccccCCCCcEEEccccceeecChh
Q 011500 284 TAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPEM 322 (484)
Q Consensus 284 ~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~~ 322 (484)
..++|+|+.+. +++|||...+.++..
T Consensus 25 v~i~I~G~~~~-------------~LlDTGAd~tVl~~~ 50 (132)
T 3slz_A 25 ITLKVGGQPVT-------------FLVDTGAQHSVLTQN 50 (132)
T ss_dssp EEEEETTEEEE-------------EEECTTCSSCEECSC
T ss_pred EEEEECCEEEE-------------EEEeCCCCeEEEccc
Confidence 44888998775 899999999999874
No 56
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=28.58 E-value=33 Score=26.31 Aligned_cols=29 Identities=7% Similarity=0.194 Sum_probs=23.2
Q ss_pred eEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecC
Q 011500 279 YSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLP 320 (484)
Q Consensus 279 w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp 320 (484)
|+=.+..+.|+|+.+. +++|||.--+.+.
T Consensus 6 ~~RP~vti~I~Gq~~e-------------~LLDTGAD~TVl~ 34 (99)
T 3ec0_A 6 WKRPVVTAYIEGQPVE-------------VLLDTGADDSIVA 34 (99)
T ss_dssp SSCCEEEEEETTEEEE-------------EEECTTCSSCEES
T ss_pred ccCCeEEEEECCEEEE-------------EEEecCCCceEEc
Confidence 5545666899999775 8999999988884
No 57
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=27.99 E-value=37 Score=26.83 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=25.1
Q ss_pred ceEEEEeEEEEccEEeecCCcccccCCCCcEEEccccceeecCh
Q 011500 278 HYSINMTAVQVGLDFLNLPTDVFGVGDNKGTIIDSGTTLAYLPE 321 (484)
Q Consensus 278 ~w~v~l~~i~v~~~~~~~~~~~~~~~~~~~aiiDTGtt~~~lp~ 321 (484)
.|+=.+. ++|+|+.+. +++|||+-.+.+..
T Consensus 11 l~~rP~v-ikI~Gq~~e-------------aLLDTGAD~TVi~~ 40 (116)
T 2hah_A 11 EKRPEIL-IFVNGYPIK-------------FLLDTGADITVLNR 40 (116)
T ss_dssp SSCCEEE-EEETTEEEE-------------EEECTTCSSCEEEG
T ss_pred ccCCCEE-EEECCEEEE-------------EEecCCCCcEEEcc
Confidence 5666667 999999775 89999999998886
No 58
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=25.98 E-value=61 Score=28.90 Aligned_cols=31 Identities=13% Similarity=0.097 Sum_probs=23.4
Q ss_pred ccEEEE---EEeCC-----CCceEEEEEEcCCCceeEeC
Q 011500 74 GLYYAK---IGIGT-----PPKDYYVQVDTGSDIMWVNC 104 (484)
Q Consensus 74 ~~Y~~~---i~iGt-----P~q~~~l~~DTGSs~~wv~~ 104 (484)
++|.++ |.||. +.....+++|||++.+++|.
T Consensus 188 ~~~~v~l~~i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~ 226 (239)
T 1b5f_A 188 YYWQFGIGDVLIGDKSTGFCAPGCQAFADSGTSLLSGPT 226 (239)
T ss_dssp TTEEEEECCEEETTEECCTTTTCEEEEECTTCSSEEECH
T ss_pred CeEEEEeeEEEECCEEecccCCCCEEEEecCcchhhCCH
Confidence 466664 67875 23457899999999999985
No 59
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*
Probab=21.90 E-value=70 Score=30.02 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=25.4
Q ss_pred cccEEEE---EEeCC---CCceEEEEEEcCCCceeEeCC
Q 011500 73 VGLYYAK---IGIGT---PPKDYYVQVDTGSDIMWVNCI 105 (484)
Q Consensus 73 ~~~Y~~~---i~iGt---P~q~~~l~~DTGSs~~wv~~~ 105 (484)
.++|.++ |.||. +.+...+++|||++.+++|..
T Consensus 192 ~~~~~v~l~~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~ 230 (329)
T 3c9x_A 192 QGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLLLDDN 230 (329)
T ss_dssp TSSCEEEECCEEETTCCCCSCCEEEEECTTCCSEEECHH
T ss_pred CceEEEEEeeEEECCEeccCCCceEEEECCCCcEeCCHH
Confidence 3567665 67876 346789999999999999875
Done!