BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011501
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/478 (53%), Positives = 339/478 (70%), Gaps = 10/478 (2%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G +
Sbjct: 3 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSI 59
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV++++KPR I+++VKAG+P D TI+ L ++EKGD +IDGGN ++++T+RR K +AE
Sbjct: 60 EEFVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 119
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
LG+ ++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+G G
Sbjct: 120 LGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDG 178
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLIAEAY +LK V + EL +VF++WNKGEL S+LIEITA
Sbjct: 179 AGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITAD 238
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
LVD +LDK G KGTGKWT Q A DL V P I S+ ARFLS +K+ER
Sbjct: 239 IFTKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDER 298
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V+A+KV G + D+ I+ VR+ALY SKICSYAQG ++A S E W+L
Sbjct: 299 VKASKVL----AGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNL 354
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIER-QSAWRRVVCL 419
+ G++ I++GGCIIRA FL +IK+AYDR+P L+N+L+D F K+I+ER Q A R +V
Sbjct: 355 RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVAT 413
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477
A GI PG +S+LAY+D+YR LPANL+QAQRDYFGAHTYERVD G FHTEW K
Sbjct: 414 AAMRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 471
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 511 bits (1315), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/478 (53%), Positives = 339/478 (70%), Gaps = 10/478 (2%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ GLAVMG+NLALNI KG+ ++VYNR K DE ++ AK + + G +
Sbjct: 2 MAKHQIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKN---IVGTYSI 58
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV++++KPR I+++VKAG+P D TI+ L ++EKGD +IDGGN ++++T+RR K +AE
Sbjct: 59 EEFVNALEKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 118
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
LG+ ++G GVSGGEEGA GPS+MPGG EA++ + I +AA+V D PC TY+G G
Sbjct: 119 LGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVRPIFEAIAAKV-DGEPCTTYIGPDG 177
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLIAEAY +LK V + EL +VF++WNKGEL S+LIEITA
Sbjct: 178 AGHYVKMVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVFADWNKGELNSYLIEITAD 237
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
LVD +LDK G KGTGKWT Q A DL V P I S+ ARFLS +K+ER
Sbjct: 238 IFTKIDEETGKPLVDVILDKAGQKGTGKWTSQNALDLGVPLPIITESVFARFLSAMKDER 297
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V+A+KV G + D+ I+ VR+ALY SKICSYAQG ++A S E W+L
Sbjct: 298 VKASKVL----AGPAVKPFEGDRAHFIEAVRRALYMSKICSYAQGFAQMKAASEEYNWNL 353
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIER-QSAWRRVVCL 419
+ G++ I++GGCIIRA FL +IK+AYDR+P L+N+L+D F K+I+ER Q A R +V
Sbjct: 354 RYGDIAMIFRGGCIIRAQFLQKIKEAYDRDPALSNLLLDSYF-KDIVERYQDALREIVAT 412
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477
A GI PG +S+LAY+D+YR LPANL+QAQRDYFGAHTYERVD G FHTEW K
Sbjct: 413 AAMRGIPVPGSASALAYYDSYRTAVLPANLIQAQRDYFGAHTYERVDKEGIFHTEWLK 470
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/477 (49%), Positives = 323/477 (67%), Gaps = 9/477 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M Q G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E V + Q+ NL
Sbjct: 2 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE-VFKEHQDKNLVFT--KTL 58
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++KPR I+++V+AG+ D TIK+L ++ GD +IDGGN + +T RR +A+
Sbjct: 59 EEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELAD 118
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSG-PCVTYVGKG 179
G+ ++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+G
Sbjct: 119 SGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN 178
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239
G+G++VKM+HNGIEYGDMQLIAE+YD+LK + LSN E+Q +F EWN+GEL S+LIEIT
Sbjct: 179 GAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 238
Query: 240 XXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEE 299
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+E
Sbjct: 239 EVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDE 298
Query: 300 RVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWD 359
RV+A+KV + + + DKK++I+ +R+ALY SKI SYAQG +R S E WD
Sbjct: 299 RVKASKVLSGPAL-----DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 353
Query: 360 LKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419
L G + +IW+ GCIIRA FL I A+D++ +L N+L+D F Q A R VV L
Sbjct: 354 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 413
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
A+ +G P +S+++Y+D+YR E LPANL+QAQRDYFGAHTYER D +G FH +W+
Sbjct: 414 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 470
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of Inhibition
Length = 472
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/477 (49%), Positives = 323/477 (67%), Gaps = 9/477 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M Q G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E V + Q+ NL
Sbjct: 1 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE-VFKEHQDKNLVFT--KTL 57
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++KPR I+++V+AG+ D TIK+L ++ GD +IDGGN + +T RR +A+
Sbjct: 58 EEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELAD 117
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSG-PCVTYVGKG 179
G+ ++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+G
Sbjct: 118 SGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN 177
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239
G+G++VKM+HNGIEYGDMQLIAE+YD+LK + LSN E+Q +F EWN+GEL S+LIEIT
Sbjct: 178 GAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 237
Query: 240 XXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEE 299
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+E
Sbjct: 238 EVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDE 297
Query: 300 RVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWD 359
RV+A+KV + + + DKK++I+ +R+ALY SKI SYAQG +R S E WD
Sbjct: 298 RVKASKVLSGPAL-----DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 352
Query: 360 LKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419
L G + +IW+ GCIIRA FL I A+D++ +L N+L+D F Q A R VV L
Sbjct: 353 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 412
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
A+ +G P +S+++Y+D+YR E LPANL+QAQRDYFGAHTYER D +G FH +W+
Sbjct: 413 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 469
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/477 (49%), Positives = 323/477 (67%), Gaps = 9/477 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M Q G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E V + Q+ NL
Sbjct: 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEE-VFKEHQDKNLVFT--KTL 59
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++KPR I+++V+AG+ D TIK+L ++ GD +IDGGN + +T RR +A+
Sbjct: 60 EEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELAD 119
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSG-PCVTYVGKG 179
G+ ++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+G
Sbjct: 120 SGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN 179
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239
G+G++VKM+HNGIEYGDMQLIAE+YD+LK + LSN E+Q +F EWN+GEL S+LIEIT
Sbjct: 180 GAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 239
Query: 240 XXXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEE 299
Y+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+E
Sbjct: 240 EVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDE 299
Query: 300 RVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWD 359
RV+A+KV + + + DKK++I+ +R+ALY SKI SYAQG +R S E WD
Sbjct: 300 RVKASKVLSGPAL-----DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 354
Query: 360 LKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419
L G + +IW+ GCIIRA FL I A+D++ +L N+L+D F Q A R VV L
Sbjct: 355 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 414
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
A+ +G P +S+++Y+D+YR E LPANL+QAQRDYFGAHTYER D +G FH +W+
Sbjct: 415 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWY 471
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/476 (49%), Positives = 316/476 (66%), Gaps = 9/476 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P Y +
Sbjct: 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE- 71
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
FV S++ PR I+++VKAG+ D I +L Y++KGD IIDGGN ++++T RR + ++
Sbjct: 72 --FVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA 129
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G ++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+G G
Sbjct: 130 EGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADG 189
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLIAEAY +LK L+NEEL Q F+EWN GEL S+LI+IT
Sbjct: 190 AGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-K 248
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++R
Sbjct: 249 DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR 308
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV A+ DK + I+ VR+ALY KI SYAQG + +RA S E WDL
Sbjct: 309 VAASKVLSGP-----QAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDL 363
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
GE+ +I++ GCIIRA FL +I AY NP +AN+L+ P F + + Q A R VV A
Sbjct: 364 NYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPYFKQIADDYQQALRDVVAYA 423
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
+ GI P S+++AY+D+YR LPANL+QAQRDYFGAHTY+R+D G FHTEW
Sbjct: 424 VQIGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 234/476 (49%), Positives = 316/476 (66%), Gaps = 9/476 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + +P Y +
Sbjct: 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKE- 71
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
FV S++ PR I+++VKAG+ D I +L Y++KGD IIDGGN ++++T RR + ++
Sbjct: 72 --FVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA 129
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G ++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+G G
Sbjct: 130 EGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADG 189
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLIAEAY +LK L+NEEL Q F+EWN GEL S+LI+IT
Sbjct: 190 AGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDIT-K 248
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++R
Sbjct: 249 DIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR 308
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV A+ DK + I+ VR+ALY KI SYAQG + +RA S E WDL
Sbjct: 309 VAASKVLSGP-----QAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDL 363
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
GE+ +I++ GCIIRA FL +I A NP +AN+L+ P F + + Q A R VV A
Sbjct: 364 NYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYA 423
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
+ +GI P S+++AY+D+YR LPANL+QAQRDYFGAHTY+R+D G FHTEW
Sbjct: 424 VQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 465 bits (1197), Expect = e-131, Method: Compositional matrix adjust.
Identities = 233/477 (48%), Positives = 317/477 (66%), Gaps = 9/477 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ G+AVMG+NLALNI +G+ +SV+NR+ K +E + + +P Y +
Sbjct: 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQE- 71
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
FV S++ PR I+++VKAG+ D I +L Y++KGD IIDGGN ++++T RR + ++
Sbjct: 72 --FVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA 129
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G ++G GVSGGEEG GPS+MPGG EAY+ + IL ++AA D PCVTY+G G
Sbjct: 130 EGFNFIGTGVSGGEEGTLKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADG 189
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLIAEAY +LK LSNEEL Q F+EWN+GEL S+LI+IT
Sbjct: 190 AGHYVKMVHNGIEYGDMQLIAEAYALLKGGLALSNEELAQTFTEWNEGELSSYLIDIT-K 248
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
YLVD +LD+ KGTGKWT Q + DL I S+ AR++S LK++R
Sbjct: 249 DIFTKKDEEGKYLVDVILDEAANKGTGKWTSQSSLDLGEPLSLITESVFARYISSLKDQR 308
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV A+ DK + I+ VR+ALY KI SYAQG + +RA S E WDL
Sbjct: 309 VAASKVLSGP-----QAQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASDEYNWDL 363
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
GE+ +I++ GCIIRA FL +I AY +N +AN+L+ P F + + Q A R VV A
Sbjct: 364 NYGEIAKIFRAGCIIRAQFLQKITDAYAQNAGIANLLLAPYFKQIADDYQQALRDVVAYA 423
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477
+ +GI P S+++AY+D+YR LPANL+QAQRDYFGAHTY+R D G FHTEW +
Sbjct: 424 VQNGIPVPTFSAAIAYYDSYRSAVLPANLIQAQRDYFGAHTYKRTDKEGIFHTEWLE 480
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And
Substrate Binding In 6-Phosphogluconate Dehydrogenase:
Implications For Nadp Specificity And The Enzyme
Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase Refined
At 2 Angstroms Resolution
Length = 482
Score = 433 bits (1114), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/474 (48%), Positives = 310/474 (65%), Gaps = 8/474 (1%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
Q I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G H E
Sbjct: 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEE 59
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
V ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G
Sbjct: 60 MVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG 119
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
+L++G GVSGGE+GARYGPSLMPGG+ EA+ HI+ I +AA+V PC +VG G+G
Sbjct: 120 ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAG 179
Query: 183 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXX 242
+FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ + F EWNK EL SFLIEITA
Sbjct: 180 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA-SI 238
Query: 243 XXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVE 302
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++
Sbjct: 239 LKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 298
Query: 303 AAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
A+K + G ++ E DKK ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 299 ASKKLK--GPQNIPFEG--DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 354
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAIN 422
G + +W+GGCIIR++FL +IK A+DRNP L N+L+D F + Q +WRR + +
Sbjct: 355 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 414
Query: 423 SGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+GI P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 415 AGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 431 bits (1107), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/476 (48%), Positives = 309/476 (64%), Gaps = 8/476 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M Q I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G
Sbjct: 23 MAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSL 80
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
+ V ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + +
Sbjct: 81 KEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKA 140
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+L++G GVSGGEEGARYGPSLMPGG+ EA+ HI+ I +AA+V PC +VG G
Sbjct: 141 KGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEG 200
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G+FVKM+HNGIEYGDMQLI EAY ++K V ++ +E+ Q F +WNK EL SFLIEITA
Sbjct: 201 AGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA- 259
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER
Sbjct: 260 NILKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDER 319
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
++A+K + G + DKK ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 320 IQASKKLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTL 375
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
G + +W+GGCIIR++FL +IK A+DRNP+L N+L+D F + Q +WRR V
Sbjct: 376 NYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTG 435
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+ +GI P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 436 VQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 491
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/474 (48%), Positives = 308/474 (64%), Gaps = 8/474 (1%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
Q I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G +
Sbjct: 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKE 61
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
V ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + G
Sbjct: 62 MVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG 121
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
+L++G GVSGGEEGARYGPSLMPGG+ EA+ HI+ I +AA+V PC +VG G+G
Sbjct: 122 ILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG 181
Query: 183 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXX 242
+FVKM+HNGIEYGDMQLI EAY ++K V ++ +E+ Q F +WNK EL SFLIEITA
Sbjct: 182 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITA-NI 240
Query: 243 XXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVE 302
+L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++
Sbjct: 241 LKFQDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 300
Query: 303 AAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
A+K + G + DKK ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 301 ASKKLK----GPQKFQFDGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 356
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAIN 422
G + +W+GGCIIR++FL +IK A+DRNP+L N+L+D F + Q +WRR V +
Sbjct: 357 GGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLDDFFKSAVENCQDSWRRAVSTGVQ 416
Query: 423 SGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+GI P +++L+++D YR E LPA+L+QAQRDYFGAHTYE + G F HT W
Sbjct: 417 AGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNW 470
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 427 bits (1099), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/457 (49%), Positives = 304/457 (66%), Gaps = 7/457 (1%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
GL GLAVMGQNL LN A+ GF + YNRT SKVD + A + + G E F+
Sbjct: 13 FGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFL--ANEAKGKSIIGATSIEDFIS 70
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
+++PR +++LVKAG+PVD I + +EKGD IIDGGN + ++ RR + + + G+L+
Sbjct: 71 KLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILF 130
Query: 126 LGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFV 185
+G GVSGGEEGARYGPSLMPGGS EA+ HI++I ++A+ D PC +VG G+G++V
Sbjct: 131 VGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAK-SDGEPCCEWVGPAGAGHYV 189
Query: 186 KMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXXXX 245
KM+HNGIEYGDMQLI EAYD++K +G +++E+ VF++WN G L SFL+EIT
Sbjct: 190 KMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFD 249
Query: 246 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAK 305
LV+K++D G KGTGKWT A DL + I ++ AR LS LK ER+ A+K
Sbjct: 250 DVDGKP-LVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASK 308
Query: 306 VFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 365
V +V + D+++ +DD+ QALYASKI SYAQG LIR + GW L +
Sbjct: 309 VLPGP---EVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAI 365
Query: 366 TRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGI 425
+W+GGCIIR++FL +I KAY PDL N+L + FA + + QS WR+ + LA GI
Sbjct: 366 ALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALATTYGI 425
Query: 426 STPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTY 462
TP S++L+++D YR ERLPANL+QAQRDYFGAHT+
Sbjct: 426 PTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTF 462
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 277 bits (708), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 168/470 (35%), Positives = 257/470 (54%), Gaps = 21/470 (4%)
Query: 17 NLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRV 72
NLALNIAEKGF ++V+NRT SK +E + K + P G F E+F S++KPR
Sbjct: 15 NLALNIAEKGFKVAVFNRTYSKSEEFM---KANASAPFAGNLKAFETMEAFAASLKKPRK 71
Query: 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132
++LV+AG+ D TI+ L EKGD ++D GN +++ RR + + GL +LGMG+SG
Sbjct: 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG 131
Query: 133 GEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI 192
GEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT G GG+G+ VKM HN
Sbjct: 132 GEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSG 191
Query: 193 EYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW-NKGELLSFLIEITAXXXXXXXXXXXX 251
EY +Q+ E +D+L+++G L+N+E+ V +W +K L S++++I+
Sbjct: 192 EYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS-IAAARAKDKDGS 249
Query: 252 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSG 311
YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K ER A + G
Sbjct: 250 YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTER--QANASNAPG 307
Query: 312 IGDVLAEQTVDKKKLIDDVRQALYASK----ICSYAQGMNLIRAKSIEKGWDLKLGELTR 367
I +K +++Q LY S I YAQ +R + L L
Sbjct: 308 ITQSPGYTLKNKSPSGPEIKQ-LYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIA 366
Query: 368 IWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS-GIS 426
++ GCI++ L + +A+++NP+++N++ F EI +R +V L + +S
Sbjct: 367 TFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMVALITSKLEVS 424
Query: 427 TPGMSSSLAYFDTYRRERLP-ANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
P +S+SL Y L LV QRD FG H YERVD G +W
Sbjct: 425 IPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 474
>pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
pdb|4E21|B Chain B, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase
From Geobacter Metallireducens
Length = 358
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/269 (27%), Positives = 118/269 (43%), Gaps = 43/269 (15%)
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E F + KPRV+ + V A + VD ++ + + D +IDGGN Y++ RR
Sbjct: 73 EEFCAKLVKPRVVWLXVPA-AVVDSXLQRXTPLLAANDIVIDGGNSHYQDDIRRADQXRA 131
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT------ 174
G+ Y+ +G SGG G G L GG +A + ++ + +A + + P
Sbjct: 132 QGITYVDVGTSGGIFGLERGYCLXIGGEKQAVERLDPVFRTLAPGI-GAAPRTPGREKRE 190
Query: 175 --------YVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK--SVGK-----------L 213
+ G G+G+FVK +HNGIEYG AE ++L + GK L
Sbjct: 191 GTAELGYLHCGPSGAGHFVKXVHNGIEYGLXAAYAEGLNILHHANAGKEGQGADAETAPL 250
Query: 214 SNE-------ELQQVFSEWNKGELL-SFLIEITAXXXXXXXXXXXXYLVDKVLDKTGMKG 265
N +L + W +G ++ S+L++++A + + + G
Sbjct: 251 RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSG 304
Query: 266 TGKWTVQQAADLSVAAPTIESSLDARFLS 294
G+WTV A D V A + S+L RF S
Sbjct: 305 EGRWTVAAAIDEGVPAHVLSSALYERFSS 333
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 26/140 (18%)
Query: 340 CSYAQGMNLIR-AKSIEKG-----------------WDLKLGELTRIWKGGCIIRAIFLD 381
+YA+G+N++ A + ++G +DL L ++T +W+ G +I + LD
Sbjct: 222 AAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLD 281
Query: 382 RIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYR 441
A +PDL EF + + R V AI+ G+ +SS+L + R
Sbjct: 282 LSATALLDSPDLQ------EFQGRVSDSGEG-RWTVAAAIDEGVPAHVLSSALYERFSSR 334
Query: 442 RERLPAN-LVQAQRDYFGAH 460
E AN L+ A R FG H
Sbjct: 335 GEDDFANRLLSAXRYEFGGH 354
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 83/189 (43%), Gaps = 21/189 (11%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++ GL MG +A ++A + FP V+NRT K E E +PL
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKALRHQEEFGSEA-VPL---------- 50
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ + RVI + V + + L Y+ +G +D + E + R + + E G+
Sbjct: 51 ERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 110
Query: 125 YLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
YL VSGG GA G ++M GG EA + + L V +VG G+G+
Sbjct: 111 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLAYAKK--------VVHVGPVGAGH 162
Query: 184 FVKMIHNGI 192
VK I+N +
Sbjct: 163 AVKAINNAL 171
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 80/189 (42%), Gaps = 21/189 (11%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++ GL G A ++A + FP V+NRT K E E +PL
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKALRHQEEFGSEA-VPL---------- 50
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ + RVI + V + + L Y+ +G +D + E + R + + E G+
Sbjct: 51 ERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 110
Query: 125 YLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
YL VSGG GA G ++ GG EA + + L V +VG G+G+
Sbjct: 111 YLDAPVSGGTSGAEAGTLTVXLGGPEEAVERVRPFLAYAKK--------VVHVGPVGAGH 162
Query: 184 FVKMIHNGI 192
VK I+N +
Sbjct: 163 AVKAINNAL 171
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 94/240 (39%), Gaps = 33/240 (13%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+IG GL +MG + N+ + G ++V+NRT K D ++ + G P +
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ P+ LV S V Q I+ G C +D + + + G
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIR-------PGKCYVDMSTVDADTVTELAQVIVSRGGR 144
Query: 125 YLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK----- 178
+L VSG ++ + G ++ G Y+ D C +GK
Sbjct: 145 FLEAPVSGNQQLSNDGMLVILAAGDRGLYE--------------DCSSCFQAMGKTSFFL 190
Query: 179 GGSGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIE 236
G GN KM I N ++ M IAE ++ +++ + Q + N+G+L S ++
Sbjct: 191 GEVGNAAKMMLIVNMVQGSFMATIAEGL----TLAQVTGQSQQTLLDILNQGQLASIFLD 246
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 40/231 (17%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+G GL +MG+ +++N+ + GF ++V+NRT SK DE VE +G ES
Sbjct: 23 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------HGASVCESPA 72
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCI---------IDGGNEWYENTERRQ 115
I+K + I + + LSV +KG + ID E + +
Sbjct: 73 EVIKKCKYTIAM------LSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKIN 126
Query: 116 KAVAELGLLYLGMGVSGGEEGARYGPSLMPGGS----FEAYKHIEDILLKVAAQVPDSGP 171
+A+ G ++ VSG ++ A G ++ FE D+L K +
Sbjct: 127 EAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRS-------- 178
Query: 172 CVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVF 222
Y+G+ G+G +K+I N I M +E VL LS++ L +
Sbjct: 179 --FYLGQVGNGAKMKLIVNMIMGSMMNAFSEGL-VLADKSGLSSDTLLDIL 226
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 97/223 (43%), Gaps = 20/223 (8%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYN--RTTSKVDETVERAKQEGNLPLYGFHDPES 62
+IG GL MG+ +A+N+ ++G + ++ E N + D
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASD--I 63
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
S+ ++ ++ V K G I+D + +T + K AE G
Sbjct: 64 IFTSLPNAGIVETVMNGPGGVLSACKA-------GTVIVDMSSVSPSSTLKMAKVAAEKG 116
Query: 123 LLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGS 181
+ Y+ VSGG +GA G ++M G S ++ I+ +L + G + +VG G+
Sbjct: 117 IDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVI-------GKDIYHVGDTGA 169
Query: 182 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224
G+ VK+++N + +M +AEA VL L E +Q++ +
Sbjct: 170 GDAVKIVNNLLLGCNMASLAEAL-VLGVKCGLKPETMQEIIGK 211
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
+G GL MG +A N+ + G+P+ +Y+ E + +Q P
Sbjct: 3 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQV-------VSSPADVAE 55
Query: 66 SIQKPRVIIML------VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA 119
+ R+I ML ++A S + +K + +KG +ID ++ K V
Sbjct: 56 --KADRIITMLPTSINAIEAYSGANGILKKV----KKGSLLIDSSTIDPAVSKELAKEVE 109
Query: 120 ELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178
++G +++ VSGG AR G + M GG + + +++L + + V Y G
Sbjct: 110 KMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSN-------VVYCGA 162
Query: 179 GGSGNFVKMIHNGIEYGDMQLIAEAYDV 206
G+G K+ +N + M AEA ++
Sbjct: 163 VGTGQAAKICNNMLLAISMIGTAEAMNL 190
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 89/208 (42%), Gaps = 27/208 (12%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
+G GL MG +A N+ + G+P+ +Y+ E + +Q P
Sbjct: 25 VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQV-------VSSPADVAE 77
Query: 66 SIQKPRVIIML------VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA 119
+ R+I ML ++A S + +K + +KG +ID ++ K V
Sbjct: 78 --KADRIITMLPTSINAIEAYSGANGILKKV----KKGSLLIDSSTIDPAVSKELAKEVE 131
Query: 120 ELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178
++G +++ VSGG AR G + M GG + + +++L + G V Y G
Sbjct: 132 KMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCM-------GSNVVYCGA 184
Query: 179 GGSGNFVKMIHNGIEYGDMQLIAEAYDV 206
G+G K+ +N + M AEA ++
Sbjct: 185 VGTGQAAKICNNMLLAISMIGTAEAMNL 212
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV-DE-------TVERAKQEGNLPLYG 56
++G GL + G A+N+A G + V T V DE VE A+Q +
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQ-----VTE 57
Query: 57 FHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQK 116
F D F+ P+V +L +++ G I+D + T+R +
Sbjct: 58 FADI-IFIXVPDTPQVEDVLFGEHGCAKTSLQ--------GKTIVDXSSISPIETKRFAQ 108
Query: 117 AVAELGLLYLGMGVSGGEEGARYGP-SLMPGGS---FEAYKHIEDILLKVAAQVPDSGPC 172
V E G YL VSGGE GAR G S+ GG F+ K + DIL G
Sbjct: 109 RVNEXGADYLDAPVSGGEIGAREGTLSIXVGGEQKVFDRVKPLFDIL----------GKN 158
Query: 173 VTYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
+T VG G G K+ + I +++ ++EA
Sbjct: 159 ITLVGGNGDGQTCKVANQIIVALNIEAVSEA 189
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP 53
T G GL +MG +A N+ GF ++V+NR +K V ++ + P
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSP 51
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 78/201 (38%), Gaps = 19/201 (9%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+I G G A + E G+ + V+NRT ++ +L G E
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARA----------ASLAALGATIHEQAR 82
Query: 65 HSIQKPRVIIMLVKAGSPVDQTI--KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
+ + +++ ++ G+ V + + ++ + G +D + + LG
Sbjct: 83 AAARDADIVVSXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGALG 142
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
+ +L VSGG GA G ++ G A LLKV + T+VG GSG
Sbjct: 143 IAHLDTPVSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-------ATHVGPHGSG 195
Query: 183 NFVKMIHNGIEYGDMQLIAEA 203
K+ + I + +AEA
Sbjct: 196 QLTKLANQXIVGITIGAVAEA 216
>pdb|1FMD|2 Chain 2, The Structure And Antigenicity Of A Type C Foot-And-Mouth
Disease Virus
pdb|1QGC|2 Chain 2, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 218
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 14/128 (10%)
Query: 253 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGI 312
L D++L T G T Q + ++ T E S S L E RV A+ F +
Sbjct: 10 LEDRIL--TTRNGHTTSTTQSSVGVTFGYATAEDSTSGPNTSAL-ETRVHQAERFFKMAL 66
Query: 313 GDVLAEQTVDK--KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWK 370
D + Q K ++ + +Y + SYA N GWD+++ + +
Sbjct: 67 FDWVPSQNFGHMHKVVLPHEPKGVYGGLVKSYAYMRN---------GWDVEVTAVGNQFN 117
Query: 371 GGCIIRAI 378
GGC++ A+
Sbjct: 118 GGCLLVAL 125
>pdb|1BBT|2 Chain 2, Methods Used In The Structure Determination Of Foot And
Mouth Disease Virus
pdb|1FOD|2 Chain 2, Structure Of A Major Immunogenic Site On Foot-And-Mouth
Disease Virus
pdb|1QQP|2 Chain 2, Foot-And-Mouth Disease Virus OLIGOSACCHARIDE RECEPTOR
COMPLEX
Length = 218
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 14/128 (10%)
Query: 253 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGI 312
L D++L T G T Q + ++ T E + SGL+ V+A + F++ +
Sbjct: 10 LEDRIL--TTRNGHTTSTTQSSVGVTYGYATAEDFVSGPNTSGLETRVVQAERFFKTH-L 66
Query: 313 GDVLAEQTVDKKKLID--DVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWK 370
D + + + L++ + +Y S SYA N GWD+++ + +
Sbjct: 67 FDWVTSDSFGRCHLLELPTDHKGVYGSLTDSYAYMRN---------GWDVEVTAVGNQFN 117
Query: 371 GGCIIRAI 378
GGC++ A+
Sbjct: 118 GGCLLVAM 125
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP 53
+ G GL +MG +A N+ + G ++++NR+ K +E + P
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATP 51
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 19 ALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78
AL + FP + T+ D+T ++ + L G +DP + S +P + ML++
Sbjct: 164 ALGQLRQRFPTLPFMALTATADDTT----RQDIVRLLGLNDPLIQISSFDRPNIRYMLME 219
Query: 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERR 114
P+DQ ++ + K I E+T R
Sbjct: 220 KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAAR 255
>pdb|1ZBA|2 Chain 2, Foot-And-Mouth Disease Virus Serotype A1061 Complexed With
Oligosaccharide Receptor.
pdb|1ZBE|2 Chain 2, Foot-And Mouth Disease Virus Serotype A1061
Length = 218
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 24/142 (16%)
Query: 253 LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGI 312
L D++L T G T Q + ++ T E + SGL+ V+A + F+
Sbjct: 10 LEDRLL--TTRNGHTTSTTQSSVGVTYGYSTEEDHVAGPNTSGLETRVVQAERFFKK--- 64
Query: 313 GDVLAEQTVDK------KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELT 366
L + T DK K + ++ + SYA N GWD+++ +
Sbjct: 65 --FLFDWTTDKPFGYLTKLELPTDHHGVFGHLVDSYAYMRN---------GWDVEVSAVG 113
Query: 367 RIWKGGCIIRAIFLDRIKKAYD 388
+ GGC++ A+ + KA+D
Sbjct: 114 NQFNGGCLLVAMVPEW--KAFD 133
>pdb|4GH4|B Chain B, Crystal Structure Of Foot And Mouth Disease Virus A22
Serotype
Length = 207
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 255 DKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGD 314
D++L T G T Q + ++ T E + SGL+ V+A + F+
Sbjct: 1 DRLL--TTRNGHTTSTTQSSVGVTYGYSTQEDHVSGPNTSGLETRVVQAERFFKKH---- 54
Query: 315 VLAEQTVDK------KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRI 368
L + T DK K + + +Y + S+A N GWD+++ +
Sbjct: 55 -LFDWTPDKAFGHLEKLELPTDHKGVYGHLVDSFAYMRN---------GWDVEVSAVGNQ 104
Query: 369 WKGGCIIRAI 378
+ GGC++ A+
Sbjct: 105 FNGGCLLVAM 114
>pdb|2RR7|A Chain A, Microtubule Binding Domain Of Dynein-C
Length = 155
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 40/160 (25%)
Query: 275 ADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQAL 334
ADL+ A P +E++L A L LK + K +S G VR+ L
Sbjct: 4 ADLAEALPLLEAALKA--LDTLKPADITEVKGMKSPPAG----------------VRRVL 45
Query: 335 YASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGG--CIIRAIFLDRIKKAYDRNPD 392
A IC +G+ R K G + W+ ++ FLD ++K +D++
Sbjct: 46 EA--IC-IMKGVKPARVKDTASG-----RMVDDYWEASKKMLMEFDFLDSLRK-FDKDHI 96
Query: 393 LANVLV-------DPEFAKEIIERQSAWRRVVCLAINSGI 425
V+V DPEF ++IE+QS V C + S +
Sbjct: 97 PPEVIVKIRPFAQDPEFQPKVIEKQS----VACAGLCSWV 132
>pdb|2WZR|2 Chain 2, The Structure Of Foot And Mouth Disease Virus Serotype
Sat1
Length = 219
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 287 SLDARFLSGLK----EERVEAAKVFRSSGIGDVLAEQTVDKKKLID--DVRQALYASKIC 340
+L +FL G E RVE A+ F + D +Q +++ + +Y +
Sbjct: 37 ALTDKFLPGPNTNGLETRVEQAERFFKHKLFDWTLDQQFGTTYVLELPTDHKGIYGQLVD 96
Query: 341 SYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAI 378
S+A I GWD+++ + GGC++ A+
Sbjct: 97 SHA---------YIRNGWDVQVSATATQFNGGCLLVAM 125
>pdb|1I12|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
pdb|1I12|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae Gna1
Complexed With Accoa
Length = 160
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 192 IEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKG 228
+E GD++ + E VL +VG ++ E ++ WN+
Sbjct: 13 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNEA 49
>pdb|1I1D|A Chain A, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|B Chain B, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|C Chain C, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
pdb|1I1D|D Chain D, Crystal Structure Of Yeast Gna1 Bound To Coa And Glnac-6p
Length = 161
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 192 IEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNK 227
+E GD++ + E VL +VG ++ E ++ WN+
Sbjct: 14 MEEGDLEQVTETLKVLTTVGTITPESFCKLIKYWNE 49
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl
Compounds By Diketoreductase
Length = 283
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45
T + + G V+G +A A GF ++ Y+ T +D +R
Sbjct: 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,269,999
Number of Sequences: 62578
Number of extensions: 603383
Number of successful extensions: 1547
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1470
Number of HSP's gapped (non-prelim): 40
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)