Query 011501
Match_columns 484
No_of_seqs 409 out of 3843
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 02:03:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0362 Gnd 6-phosphogluconate 100.0 4E-130 1E-134 949.6 45.1 471 1-479 1-471 (473)
2 KOG2653 6-phosphogluconate deh 100.0 1E-122 3E-127 882.2 41.1 475 4-484 7-482 (487)
3 PTZ00142 6-phosphogluconate de 100.0 8E-114 2E-118 896.7 51.5 468 4-476 2-470 (470)
4 PLN02350 phosphogluconate dehy 100.0 2E-112 4E-117 886.2 52.5 479 3-483 6-486 (493)
5 PRK09287 6-phosphogluconate de 100.0 3E-112 7E-117 881.0 49.6 455 14-477 1-457 (459)
6 TIGR00873 gnd 6-phosphoglucona 100.0 5E-111 1E-115 875.9 51.0 464 5-477 1-467 (467)
7 PF00393 6PGD: 6-phosphoglucon 100.0 8.7E-85 1.9E-89 627.0 27.3 291 182-476 1-291 (291)
8 COG1023 Gnd Predicted 6-phosph 100.0 1.1E-60 2.4E-65 436.5 26.0 298 4-465 1-299 (300)
9 TIGR00872 gnd_rel 6-phosphoglu 100.0 4.1E-54 8.8E-59 428.6 34.5 296 4-465 1-298 (298)
10 PRK09599 6-phosphogluconate de 100.0 7.7E-47 1.7E-51 377.1 35.4 299 4-465 1-300 (301)
11 COG2084 MmsB 3-hydroxyisobutyr 100.0 4E-47 8.7E-52 368.0 28.2 256 4-287 1-261 (286)
12 PRK12490 6-phosphogluconate de 100.0 1.9E-44 4.1E-49 359.4 35.3 207 4-221 1-208 (299)
13 KOG0409 Predicted dehydrogenas 100.0 3.3E-43 7.1E-48 333.5 25.6 257 3-287 35-296 (327)
14 PRK15059 tartronate semialdehy 100.0 1.1E-40 2.4E-45 330.6 28.5 262 4-295 1-266 (292)
15 PRK15461 NADH-dependent gamma- 100.0 1.3E-39 2.8E-44 324.2 28.5 264 4-296 2-270 (296)
16 TIGR01692 HIBADH 3-hydroxyisob 100.0 1.8E-38 3.8E-43 315.1 27.9 260 8-295 1-270 (288)
17 PLN02858 fructose-bisphosphate 100.0 1.1E-37 2.5E-42 359.8 29.3 263 3-294 4-273 (1378)
18 PRK11559 garR tartronate semia 100.0 8.5E-37 1.9E-41 304.4 29.2 264 3-295 2-269 (296)
19 TIGR01505 tartro_sem_red 2-hyd 100.0 2.3E-36 5E-41 300.5 28.6 262 5-295 1-266 (291)
20 PLN02858 fructose-bisphosphate 100.0 2.6E-35 5.5E-40 340.3 28.9 264 4-296 325-595 (1378)
21 PF03446 NAD_binding_2: NAD bi 100.0 1.2E-31 2.7E-36 243.8 13.8 154 3-166 1-157 (163)
22 TIGR03026 NDP-sugDHase nucleot 100.0 2E-28 4.4E-33 254.7 23.2 250 4-287 1-289 (411)
23 PRK11064 wecC UDP-N-acetyl-D-m 99.9 1.5E-25 3.2E-30 232.7 25.7 208 1-222 1-247 (415)
24 PRK15182 Vi polysaccharide bio 99.9 2.6E-24 5.6E-29 223.4 24.9 248 3-287 6-286 (425)
25 PRK15057 UDP-glucose 6-dehydro 99.9 4E-24 8.6E-29 219.5 24.4 200 4-222 1-232 (388)
26 PRK14618 NAD(P)H-dependent gly 99.9 9.6E-25 2.1E-29 220.8 14.8 289 3-308 4-322 (328)
27 PRK00094 gpsA NAD(P)H-dependen 99.9 5.5E-24 1.2E-28 214.9 17.7 279 4-306 2-322 (325)
28 PF00393 6PGD: 6-phosphoglucon 99.9 8.9E-25 1.9E-29 211.2 8.3 118 324-446 1-120 (291)
29 PRK06129 3-hydroxyacyl-CoA deh 99.9 7.1E-22 1.5E-26 197.9 21.0 251 3-288 2-273 (308)
30 PRK14619 NAD(P)H-dependent gly 99.9 2.4E-22 5.3E-27 201.3 15.0 261 3-309 4-301 (308)
31 COG0362 Gnd 6-phosphogluconate 99.9 1.2E-23 2.7E-28 206.1 5.0 122 320-446 175-299 (473)
32 KOG2653 6-phosphogluconate deh 99.9 9.7E-23 2.1E-27 196.5 6.1 122 320-446 179-302 (487)
33 COG0677 WecC UDP-N-acetyl-D-ma 99.9 4.6E-20 9.9E-25 182.2 21.4 205 4-222 10-250 (436)
34 COG1004 Ugd Predicted UDP-gluc 99.9 2E-19 4.4E-24 178.5 25.7 255 4-288 1-288 (414)
35 PRK12557 H(2)-dependent methyl 99.8 1.6E-19 3.5E-24 182.0 22.4 200 4-222 1-236 (342)
36 PLN02353 probable UDP-glucose 99.8 7.7E-19 1.7E-23 184.0 28.0 256 3-287 1-299 (473)
37 PRK07531 bifunctional 3-hydrox 99.8 9.6E-19 2.1E-23 185.9 19.5 194 3-223 4-218 (495)
38 COG0240 GpsA Glycerol-3-phosph 99.8 3.1E-19 6.7E-24 175.1 14.1 292 3-307 1-322 (329)
39 PRK09260 3-hydroxybutyryl-CoA 99.8 3.6E-18 7.9E-23 169.6 19.6 192 4-222 2-217 (288)
40 PRK07679 pyrroline-5-carboxyla 99.8 3.5E-18 7.5E-23 169.0 19.3 194 1-225 1-209 (279)
41 PLN02688 pyrroline-5-carboxyla 99.8 2.1E-17 4.5E-22 162.3 22.4 186 4-223 1-202 (266)
42 PRK08229 2-dehydropantoate 2-r 99.8 1.8E-17 4E-22 168.5 21.1 265 3-292 2-313 (341)
43 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.7E-17 3.7E-22 176.1 19.9 188 4-223 8-223 (507)
44 PRK07417 arogenate dehydrogena 99.8 1.8E-17 3.8E-22 163.9 16.0 176 4-200 1-189 (279)
45 COG1023 Gnd Predicted 6-phosph 99.7 2E-18 4.2E-23 159.2 7.6 198 61-298 78-277 (300)
46 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 4.9E-17 1.1E-21 172.2 18.4 189 3-223 5-221 (503)
47 PRK08507 prephenate dehydrogen 99.7 2E-16 4.4E-21 156.0 21.2 190 4-221 1-205 (275)
48 PRK07819 3-hydroxybutyryl-CoA 99.7 3.5E-16 7.6E-21 154.9 19.8 195 3-222 5-222 (286)
49 PTZ00345 glycerol-3-phosphate 99.7 9.3E-17 2E-21 162.9 15.0 294 3-309 11-356 (365)
50 PRK07530 3-hydroxybutyryl-CoA 99.7 4.4E-16 9.5E-21 155.0 19.5 192 1-222 2-219 (292)
51 PRK06130 3-hydroxybutyryl-CoA 99.7 9.5E-16 2.1E-20 154.0 20.3 197 1-223 1-217 (311)
52 PRK12439 NAD(P)H-dependent gly 99.7 2.6E-16 5.7E-21 159.8 16.4 293 3-310 7-331 (341)
53 PTZ00142 6-phosphogluconate de 99.7 2.4E-17 5.2E-22 172.7 8.5 118 321-446 175-298 (470)
54 TIGR03376 glycerol3P_DH glycer 99.7 2.2E-16 4.8E-21 159.2 13.8 278 5-295 1-332 (342)
55 PRK08655 prephenate dehydrogen 99.7 3.2E-15 6.9E-20 156.3 21.8 194 4-220 1-200 (437)
56 PRK07066 3-hydroxybutyryl-CoA 99.7 2.1E-15 4.5E-20 150.7 19.2 195 3-223 7-221 (321)
57 PRK06035 3-hydroxyacyl-CoA deh 99.7 2.1E-15 4.5E-20 150.1 18.8 195 1-222 1-221 (291)
58 PLN02545 3-hydroxybutyryl-CoA 99.7 1.6E-15 3.5E-20 151.2 18.1 194 3-222 4-219 (295)
59 PRK11199 tyrA bifunctional cho 99.7 1.6E-15 3.4E-20 155.7 18.0 178 3-220 98-279 (374)
60 TIGR00873 gnd 6-phosphoglucona 99.7 9.2E-17 2E-21 168.3 8.1 118 321-446 172-294 (467)
61 PRK09287 6-phosphogluconate de 99.7 1.3E-16 2.9E-21 166.5 8.0 118 321-446 164-287 (459)
62 PRK08293 3-hydroxybutyryl-CoA 99.6 2.1E-14 4.5E-19 142.6 21.5 198 1-222 1-221 (287)
63 PRK05808 3-hydroxybutyryl-CoA 99.6 1.5E-14 3.3E-19 143.2 19.3 193 1-222 1-218 (282)
64 PRK12921 2-dehydropantoate 2-r 99.6 4.1E-14 8.9E-19 141.6 21.3 254 4-286 1-292 (305)
65 PRK07680 late competence prote 99.6 1.2E-13 2.6E-18 136.1 23.6 196 4-225 1-205 (273)
66 PRK14620 NAD(P)H-dependent gly 99.6 4.3E-14 9.4E-19 142.9 20.7 271 4-294 1-313 (326)
67 PRK06476 pyrroline-5-carboxyla 99.6 3.7E-14 7.9E-19 138.7 19.5 192 4-224 1-195 (258)
68 PRK07502 cyclohexadienyl dehyd 99.6 2.4E-14 5.2E-19 143.5 18.3 163 3-182 6-183 (307)
69 TIGR01724 hmd_rel H2-forming N 99.6 1E-13 2.2E-18 135.1 21.0 149 4-165 1-188 (341)
70 PRK11880 pyrroline-5-carboxyla 99.6 2.7E-13 5.9E-18 133.2 24.0 198 3-228 2-208 (267)
71 PRK06522 2-dehydropantoate 2-r 99.6 1.4E-13 3.1E-18 137.5 20.2 254 4-286 1-289 (304)
72 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 3.7E-14 8.1E-19 131.2 14.0 149 4-157 1-184 (185)
73 PRK06545 prephenate dehydrogen 99.6 2.1E-13 4.5E-18 139.6 19.2 171 4-189 1-185 (359)
74 PRK12491 pyrroline-5-carboxyla 99.5 1.7E-12 3.6E-17 127.6 22.4 197 1-224 1-206 (272)
75 PRK06249 2-dehydropantoate 2-r 99.5 9.7E-13 2.1E-17 132.3 20.9 253 2-286 4-300 (313)
76 PLN02256 arogenate dehydrogena 99.5 2.6E-12 5.6E-17 128.1 21.0 157 3-178 36-204 (304)
77 PRK08269 3-hydroxybutyryl-CoA 99.5 6E-13 1.3E-17 133.3 16.3 178 14-223 1-216 (314)
78 COG0287 TyrA Prephenate dehydr 99.5 2.7E-12 5.8E-17 125.8 19.5 160 2-178 2-171 (279)
79 PRK07634 pyrroline-5-carboxyla 99.5 4E-12 8.8E-17 123.2 19.6 195 2-224 3-208 (245)
80 COG1250 FadB 3-hydroxyacyl-CoA 99.5 2.8E-12 6E-17 126.4 17.4 195 1-223 1-219 (307)
81 PLN02712 arogenate dehydrogena 99.4 3.7E-12 8.1E-17 139.2 18.4 156 3-178 369-537 (667)
82 PLN02350 phosphogluconate dehy 99.4 4.3E-13 9.3E-18 141.0 10.6 119 320-446 180-304 (493)
83 PF03807 F420_oxidored: NADP o 99.4 1.4E-12 3.1E-17 107.5 10.0 90 5-105 1-95 (96)
84 TIGR01915 npdG NADPH-dependent 99.4 3.6E-12 7.8E-17 121.5 13.7 164 4-181 1-192 (219)
85 PF14833 NAD_binding_11: NAD-b 99.4 1.8E-12 3.8E-17 112.0 9.1 104 180-295 1-105 (122)
86 PF01210 NAD_Gly3P_dh_N: NAD-d 99.4 3E-12 6.5E-17 115.6 10.5 124 5-132 1-136 (157)
87 PRK05708 2-dehydropantoate 2-r 99.4 1.4E-11 3E-16 123.3 16.1 256 3-287 2-289 (305)
88 PRK05479 ketol-acid reductoiso 99.4 4.7E-11 1E-15 119.3 19.5 196 4-218 18-224 (330)
89 COG2085 Predicted dinucleotide 99.4 9E-12 2E-16 115.0 12.5 163 3-182 1-184 (211)
90 COG0345 ProC Pyrroline-5-carbo 99.3 9.1E-11 2E-15 113.5 20.0 193 3-223 1-202 (266)
91 TIGR02441 fa_ox_alpha_mit fatt 99.3 2E-11 4.4E-16 135.2 17.1 193 3-225 335-552 (737)
92 PRK08818 prephenate dehydrogen 99.3 3.5E-11 7.7E-16 122.3 17.4 143 3-178 4-155 (370)
93 PRK06928 pyrroline-5-carboxyla 99.3 1.8E-10 3.8E-15 113.8 21.3 192 4-223 2-206 (277)
94 PRK11730 fadB multifunctional 99.3 3.7E-11 8E-16 133.1 18.0 190 4-223 314-528 (715)
95 PLN02712 arogenate dehydrogena 99.3 8.4E-11 1.8E-15 128.7 20.4 152 3-166 52-215 (667)
96 PRK14806 bifunctional cyclohex 99.3 5.8E-11 1.3E-15 132.9 19.7 153 4-165 4-171 (735)
97 TIGR02437 FadB fatty oxidation 99.3 4.2E-11 9.2E-16 132.3 18.0 190 4-223 314-528 (714)
98 TIGR02440 FadJ fatty oxidation 99.3 5.5E-11 1.2E-15 131.4 18.7 191 4-223 305-520 (699)
99 PF02737 3HCDH_N: 3-hydroxyacy 99.3 7.8E-12 1.7E-16 115.4 10.1 147 5-165 1-173 (180)
100 PTZ00431 pyrroline carboxylate 99.3 8.4E-10 1.8E-14 108.0 23.2 187 1-223 1-198 (260)
101 PF10727 Rossmann-like: Rossma 99.3 6.9E-12 1.5E-16 108.3 7.1 110 4-126 11-123 (127)
102 PRK11154 fadJ multifunctional 99.3 9.7E-11 2.1E-15 129.7 18.0 191 4-223 310-525 (708)
103 COG1893 ApbA Ketopantoate redu 99.3 4.8E-10 1E-14 111.9 20.4 254 4-286 1-291 (307)
104 KOG2666 UDP-glucose/GDP-mannos 99.1 7.6E-09 1.6E-13 99.6 19.2 239 3-260 1-280 (481)
105 PRK12480 D-lactate dehydrogena 99.1 8.4E-10 1.8E-14 111.4 13.3 115 4-132 147-262 (330)
106 PRK07574 formate dehydrogenase 99.1 9.6E-10 2.1E-14 112.6 13.1 112 4-125 193-305 (385)
107 cd01075 NAD_bind_Leu_Phe_Val_D 99.1 8E-09 1.7E-13 97.0 17.8 128 3-148 28-157 (200)
108 PLN03139 formate dehydrogenase 99.1 1.5E-09 3.2E-14 111.2 13.2 118 4-131 200-318 (386)
109 TIGR00745 apbA_panE 2-dehydrop 99.1 1.2E-08 2.7E-13 101.3 19.6 243 14-286 2-282 (293)
110 cd01065 NAD_bind_Shikimate_DH 99.0 8.9E-10 1.9E-14 98.9 9.4 118 3-128 19-138 (155)
111 PRK13243 glyoxylate reductase; 99.0 1.8E-09 4E-14 109.2 12.2 110 4-125 151-261 (333)
112 TIGR00465 ilvC ketol-acid redu 99.0 1.5E-08 3.2E-13 101.5 18.2 148 3-165 3-161 (314)
113 KOG2305 3-hydroxyacyl-CoA dehy 99.0 3.8E-09 8.2E-14 97.4 12.6 198 1-222 1-221 (313)
114 PF02153 PDH: Prephenate dehyd 99.0 6E-09 1.3E-13 101.8 14.9 138 18-166 1-153 (258)
115 KOG2304 3-hydroxyacyl-CoA dehy 99.0 2.6E-09 5.7E-14 98.4 10.8 195 3-223 11-233 (298)
116 PRK08605 D-lactate dehydrogena 99.0 3.8E-09 8.3E-14 106.9 12.5 109 4-125 147-257 (332)
117 PRK06436 glycerate dehydrogena 99.0 2.8E-09 6.1E-14 106.2 11.1 113 4-131 123-236 (303)
118 PRK15469 ghrA bifunctional gly 99.0 2.2E-09 4.9E-14 107.4 10.4 111 4-126 137-248 (312)
119 PF02826 2-Hacid_dh_C: D-isome 99.0 3.2E-09 7E-14 97.9 10.2 110 4-124 37-147 (178)
120 PRK13302 putative L-aspartate 98.9 1.5E-08 3.2E-13 99.6 12.7 121 1-133 4-128 (271)
121 PRK13403 ketol-acid reductoiso 98.9 8E-09 1.7E-13 102.0 10.6 193 4-218 17-222 (335)
122 TIGR01327 PGDH D-3-phosphoglyc 98.8 2.1E-08 4.5E-13 107.6 11.7 111 4-125 139-250 (525)
123 KOG2380 Prephenate dehydrogena 98.8 6.9E-08 1.5E-12 94.1 13.0 151 4-166 53-215 (480)
124 PRK13581 D-3-phosphoglycerate 98.8 2.9E-08 6.3E-13 106.5 11.5 108 4-123 141-249 (526)
125 COG0111 SerA Phosphoglycerate 98.8 3.3E-08 7.2E-13 99.2 10.9 109 4-123 143-252 (324)
126 PRK00257 erythronate-4-phospha 98.8 2.9E-08 6.2E-13 101.7 10.0 114 4-132 117-235 (381)
127 COG4007 Predicted dehydrogenas 98.7 9.2E-07 2E-11 83.3 18.4 202 3-221 1-237 (340)
128 PLN02928 oxidoreductase family 98.7 5.6E-08 1.2E-12 98.9 11.1 121 4-131 160-289 (347)
129 COG1052 LdhA Lactate dehydroge 98.7 1.2E-07 2.5E-12 95.2 12.4 116 4-131 147-263 (324)
130 PF07991 IlvN: Acetohydroxy ac 98.7 5.3E-08 1.2E-12 86.5 8.8 91 3-105 4-96 (165)
131 PRK11790 D-3-phosphoglycerate 98.7 7.7E-08 1.7E-12 100.0 11.3 109 4-126 152-261 (409)
132 PRK08410 2-hydroxyacid dehydro 98.7 8.4E-08 1.8E-12 96.2 11.1 106 4-124 146-252 (311)
133 PRK13304 L-aspartate dehydroge 98.7 2.5E-07 5.5E-12 90.7 13.0 117 4-133 2-125 (265)
134 PRK06487 glycerate dehydrogena 98.7 2.8E-07 6E-12 92.7 13.0 104 4-124 149-253 (317)
135 PRK15438 erythronate-4-phospha 98.7 1E-07 2.3E-12 97.3 10.0 105 4-123 117-226 (378)
136 PRK06141 ornithine cyclodeamin 98.6 9.5E-08 2.1E-12 96.1 9.4 115 4-128 126-242 (314)
137 PRK15409 bifunctional glyoxyla 98.6 2.2E-07 4.8E-12 93.5 11.9 109 4-124 146-256 (323)
138 PRK06932 glycerate dehydrogena 98.6 2.7E-07 5.9E-12 92.6 12.4 105 4-124 148-253 (314)
139 TIGR02853 spore_dpaA dipicolin 98.6 1.7E-07 3.6E-12 92.9 10.6 111 4-129 152-262 (287)
140 PRK14194 bifunctional 5,10-met 98.6 1.8E-07 3.8E-12 92.2 8.3 74 4-107 160-234 (301)
141 TIGR00112 proC pyrroline-5-car 98.6 5.2E-06 1.1E-10 80.5 18.2 171 26-223 9-185 (245)
142 PLN02306 hydroxypyruvate reduc 98.5 8.3E-07 1.8E-11 91.3 12.8 127 4-133 166-301 (386)
143 PF01408 GFO_IDH_MocA: Oxidore 98.5 2.2E-06 4.8E-11 73.2 13.0 112 4-125 1-116 (120)
144 KOG0069 Glyoxylate/hydroxypyru 98.5 1.1E-06 2.3E-11 87.6 10.7 106 4-120 163-269 (336)
145 PF02558 ApbA: Ketopantoate re 98.4 1E-06 2.2E-11 78.6 8.6 107 6-118 1-114 (151)
146 TIGR00507 aroE shikimate 5-deh 98.4 1.2E-06 2.6E-11 86.3 9.8 117 4-128 118-236 (270)
147 PRK08306 dipicolinate synthase 98.4 1.5E-06 3.3E-11 86.6 10.5 112 3-129 152-263 (296)
148 KOG2711 Glycerol-3-phosphate d 98.3 4.3E-06 9.3E-11 82.1 11.1 201 3-210 21-265 (372)
149 PRK06444 prephenate dehydrogen 98.3 2.7E-05 5.7E-10 72.7 16.1 108 4-165 1-115 (197)
150 cd05213 NAD_bind_Glutamyl_tRNA 98.3 3.9E-06 8.4E-11 84.4 10.6 95 3-105 178-274 (311)
151 PF01488 Shikimate_DH: Shikima 98.3 2.4E-06 5.2E-11 75.1 7.9 96 4-105 13-110 (135)
152 PRK14188 bifunctional 5,10-met 98.3 2.1E-06 4.6E-11 84.8 8.3 73 4-107 159-233 (296)
153 COG1748 LYS9 Saccharopine dehy 98.3 1.1E-05 2.4E-10 82.3 13.5 126 3-135 1-130 (389)
154 TIGR02371 ala_DH_arch alanine 98.2 5.2E-06 1.1E-10 83.9 10.3 97 4-109 129-227 (325)
155 TIGR01921 DAP-DH diaminopimela 98.2 1.5E-05 3.2E-10 79.6 11.7 89 1-105 1-92 (324)
156 PRK14179 bifunctional 5,10-met 98.2 5.4E-06 1.2E-10 81.2 7.8 74 4-107 159-233 (284)
157 PRK06407 ornithine cyclodeamin 98.1 1.4E-05 3.1E-10 79.8 10.9 117 4-128 118-236 (301)
158 PRK06223 malate dehydrogenase; 98.1 2.7E-05 5.9E-10 78.1 12.8 100 3-107 2-122 (307)
159 smart00859 Semialdhyde_dh Semi 98.1 1.1E-05 2.4E-10 69.3 7.6 98 5-107 1-102 (122)
160 PRK08618 ornithine cyclodeamin 98.1 2.6E-05 5.6E-10 78.9 11.0 116 4-128 128-245 (325)
161 COG0059 IlvC Ketol-acid reduct 98.1 1.5E-05 3.2E-10 77.4 8.5 88 4-103 19-108 (338)
162 COG0673 MviM Predicted dehydro 98.1 5.1E-05 1.1E-09 77.0 13.1 114 1-125 1-121 (342)
163 PRK06823 ornithine cyclodeamin 98.1 3.1E-05 6.7E-10 77.8 11.1 115 4-128 129-246 (315)
164 PRK07340 ornithine cyclodeamin 98.0 3.4E-05 7.4E-10 77.2 10.9 113 4-128 126-240 (304)
165 PRK09310 aroDE bifunctional 3- 98.0 3E-05 6.5E-10 82.4 10.6 106 3-127 332-437 (477)
166 PLN00203 glutamyl-tRNA reducta 98.0 3E-05 6.5E-10 82.7 10.6 76 3-82 266-342 (519)
167 COG1712 Predicted dinucleotide 98.0 7.7E-05 1.7E-09 69.5 11.6 119 4-133 1-124 (255)
168 TIGR01763 MalateDH_bact malate 98.0 5.3E-05 1.1E-09 75.9 11.4 99 4-107 2-121 (305)
169 COG0569 TrkA K+ transport syst 98.0 7.6E-05 1.6E-09 71.4 12.0 99 4-106 1-103 (225)
170 COG2423 Predicted ornithine cy 97.9 6.7E-05 1.5E-09 75.3 11.0 118 4-129 131-250 (330)
171 PF00670 AdoHcyase_NAD: S-aden 97.9 5.8E-05 1.3E-09 67.6 9.2 92 4-109 24-115 (162)
172 TIGR02992 ectoine_eutC ectoine 97.9 5.5E-05 1.2E-09 76.6 10.2 97 4-108 130-228 (326)
173 PF01113 DapB_N: Dihydrodipico 97.9 7.4E-05 1.6E-09 64.6 9.2 114 4-129 1-122 (124)
174 PRK08291 ectoine utilization p 97.9 8.1E-05 1.8E-09 75.5 10.9 96 4-107 133-230 (330)
175 PLN02819 lysine-ketoglutarate 97.9 0.00012 2.5E-09 83.6 13.1 118 3-127 569-701 (1042)
176 PRK05225 ketol-acid reductoiso 97.9 2.5E-05 5.5E-10 80.4 7.1 146 4-165 37-200 (487)
177 TIGR00872 gnd_rel 6-phosphoglu 97.9 5E-05 1.1E-09 75.9 9.0 110 176-297 164-275 (298)
178 TIGR01035 hemA glutamyl-tRNA r 97.9 5.7E-05 1.2E-09 79.0 9.5 72 4-82 181-253 (417)
179 PTZ00075 Adenosylhomocysteinas 97.9 6.3E-05 1.4E-09 78.6 9.5 89 4-107 255-344 (476)
180 TIGR00518 alaDH alanine dehydr 97.9 6.7E-05 1.4E-09 77.2 9.6 98 4-105 168-268 (370)
181 TIGR00936 ahcY adenosylhomocys 97.8 0.00018 3.9E-09 74.4 12.1 100 4-118 196-297 (406)
182 PRK00045 hemA glutamyl-tRNA re 97.8 5.8E-05 1.3E-09 79.1 8.6 95 4-105 183-281 (423)
183 PRK06046 alanine dehydrogenase 97.8 0.00012 2.5E-09 74.2 10.5 115 4-128 130-246 (326)
184 PRK13303 L-aspartate dehydroge 97.8 0.00018 4E-09 70.6 11.6 121 3-135 1-127 (265)
185 PRK00258 aroE shikimate 5-dehy 97.8 6.5E-05 1.4E-09 74.3 8.4 117 4-127 124-242 (278)
186 PF02423 OCD_Mu_crystall: Orni 97.8 9E-05 1.9E-09 74.5 9.4 97 4-109 129-229 (313)
187 PTZ00082 L-lactate dehydrogena 97.8 0.00029 6.3E-09 71.1 12.5 99 4-107 7-131 (321)
188 cd05297 GH4_alpha_glucosidase_ 97.7 0.0001 2.2E-09 77.2 9.1 74 4-80 1-85 (423)
189 cd01078 NAD_bind_H4MPT_DH NADP 97.7 0.00028 6.1E-09 65.8 11.2 101 4-107 29-132 (194)
190 PRK07589 ornithine cyclodeamin 97.7 0.00023 4.9E-09 72.3 11.2 99 4-109 130-230 (346)
191 cd05292 LDH_2 A subgroup of L- 97.7 0.00019 4.2E-09 72.0 10.3 73 4-80 1-78 (308)
192 PF02254 TrkA_N: TrkA-N domain 97.7 0.00041 8.8E-09 58.8 10.9 111 6-126 1-113 (116)
193 PRK12549 shikimate 5-dehydroge 97.7 0.00015 3.2E-09 71.9 9.4 118 4-127 128-248 (284)
194 PRK13301 putative L-aspartate 97.7 0.00034 7.3E-09 67.7 11.3 118 4-135 3-128 (267)
195 TIGR00036 dapB dihydrodipicoli 97.7 0.00041 9E-09 68.1 12.0 118 4-129 2-125 (266)
196 TIGR01809 Shik-DH-AROM shikima 97.7 0.00043 9.4E-09 68.5 12.3 119 4-126 126-251 (282)
197 cd01339 LDH-like_MDH L-lactate 97.7 0.00024 5.3E-09 71.0 10.4 97 6-107 1-118 (300)
198 PRK05476 S-adenosyl-L-homocyst 97.7 0.00024 5.1E-09 73.9 10.5 90 4-108 213-303 (425)
199 PRK00048 dihydrodipicolinate r 97.7 0.00031 6.7E-09 68.6 10.7 111 3-129 1-115 (257)
200 COG0373 HemA Glutamyl-tRNA red 97.7 0.00025 5.4E-09 73.0 10.2 71 4-81 179-250 (414)
201 PRK11579 putative oxidoreducta 97.7 0.0006 1.3E-08 69.6 13.1 112 1-125 1-118 (346)
202 cd05291 HicDH_like L-2-hydroxy 97.6 0.0005 1.1E-08 69.0 11.9 98 4-106 1-119 (306)
203 PF00056 Ldh_1_N: lactate/mala 97.6 0.00035 7.6E-09 61.8 9.6 99 4-106 1-120 (141)
204 PLN02494 adenosylhomocysteinas 97.6 0.00033 7.1E-09 73.2 10.7 89 4-106 255-343 (477)
205 PF01118 Semialdhyde_dh: Semia 97.6 0.00012 2.7E-09 62.8 6.4 95 5-107 1-100 (121)
206 cd01483 E1_enzyme_family Super 97.6 0.00041 8.9E-09 61.3 9.8 122 5-132 1-124 (143)
207 PTZ00117 malate dehydrogenase; 97.6 0.00062 1.3E-08 68.7 12.1 100 3-107 5-125 (319)
208 PRK04148 hypothetical protein; 97.6 0.00056 1.2E-08 59.5 9.5 98 4-108 18-115 (134)
209 PRK10669 putative cation:proto 97.6 0.0008 1.7E-08 73.2 13.1 115 5-129 419-535 (558)
210 TIGR01761 thiaz-red thiazoliny 97.6 0.0011 2.4E-08 67.3 13.1 110 3-126 3-119 (343)
211 PF13380 CoA_binding_2: CoA bi 97.6 0.00017 3.7E-09 61.6 6.2 104 4-128 1-108 (116)
212 COG5495 Uncharacterized conser 97.5 0.00049 1.1E-08 64.3 9.4 189 4-217 11-207 (289)
213 KOG3124 Pyrroline-5-carboxylat 97.5 0.00098 2.1E-08 63.5 11.6 190 4-221 1-201 (267)
214 PF00984 UDPG_MGDP_dh: UDP-glu 97.5 0.00079 1.7E-08 55.3 9.7 88 180-287 2-89 (96)
215 PF03435 Saccharop_dh: Sacchar 97.5 0.0011 2.4E-08 68.6 13.3 122 6-135 1-129 (386)
216 cd01080 NAD_bind_m-THF_DH_Cycl 97.5 0.00034 7.4E-09 63.7 8.0 74 4-107 45-119 (168)
217 PRK03562 glutathione-regulated 97.5 0.0013 2.9E-08 72.2 13.8 118 4-131 401-520 (621)
218 cd00401 AdoHcyase S-adenosyl-L 97.5 0.00056 1.2E-08 70.9 10.2 88 4-106 203-291 (413)
219 KOG0068 D-3-phosphoglycerate d 97.5 0.00061 1.3E-08 67.1 9.7 105 4-120 147-252 (406)
220 PRK08300 acetaldehyde dehydrog 97.5 0.0011 2.3E-08 65.8 11.5 97 1-107 2-104 (302)
221 PRK06199 ornithine cyclodeamin 97.5 0.00069 1.5E-08 69.8 10.2 97 4-105 156-260 (379)
222 PRK03659 glutathione-regulated 97.4 0.0012 2.7E-08 72.3 12.6 114 4-127 401-516 (601)
223 PRK13940 glutamyl-tRNA reducta 97.4 0.00032 6.9E-09 73.1 7.3 73 4-82 182-255 (414)
224 cd05293 LDH_1 A subgroup of L- 97.4 0.0022 4.8E-08 64.4 13.1 99 3-106 3-122 (312)
225 KOG2741 Dimeric dihydrodiol de 97.4 0.0025 5.4E-08 63.4 13.0 118 4-128 7-129 (351)
226 cd00650 LDH_MDH_like NAD-depen 97.4 0.0013 2.9E-08 64.4 11.3 98 6-107 1-122 (263)
227 PRK09496 trkA potassium transp 97.4 0.0017 3.6E-08 68.7 12.0 97 4-104 1-100 (453)
228 cd01076 NAD_bind_1_Glu_DH NAD( 97.4 0.0019 4E-08 61.9 11.1 116 3-128 31-158 (227)
229 PRK00436 argC N-acetyl-gamma-g 97.3 0.00073 1.6E-08 68.9 8.5 99 3-108 2-103 (343)
230 cd05211 NAD_bind_Glu_Leu_Phe_V 97.3 0.0026 5.6E-08 60.4 11.3 114 3-128 23-149 (217)
231 PRK00066 ldh L-lactate dehydro 97.3 0.0039 8.4E-08 62.8 13.0 72 4-79 7-83 (315)
232 PRK06270 homoserine dehydrogen 97.3 0.0027 5.8E-08 64.7 12.0 130 4-134 3-157 (341)
233 PRK10206 putative oxidoreducta 97.3 0.0028 6.1E-08 64.6 12.1 113 4-127 2-120 (344)
234 cd00300 LDH_like L-lactate deh 97.3 0.0029 6.3E-08 63.2 11.9 96 6-106 1-117 (300)
235 PRK06349 homoserine dehydrogen 97.3 0.0011 2.5E-08 69.4 9.3 122 1-133 1-135 (426)
236 TIGR01850 argC N-acetyl-gamma- 97.2 0.0011 2.4E-08 67.6 8.3 97 4-107 1-102 (346)
237 PF14833 NAD_binding_11: NAD-b 97.2 0.0037 7.9E-08 53.7 10.4 101 322-438 1-103 (122)
238 COG0686 Ald Alanine dehydrogen 97.2 0.0015 3.1E-08 64.0 8.5 96 4-103 169-267 (371)
239 PRK09496 trkA potassium transp 97.2 0.0056 1.2E-07 64.7 13.7 117 3-129 231-350 (453)
240 PF01262 AlaDh_PNT_C: Alanine 97.2 0.00072 1.6E-08 61.6 6.0 98 3-105 20-140 (168)
241 PRK14175 bifunctional 5,10-met 97.2 0.0016 3.5E-08 64.1 8.6 74 4-107 159-233 (286)
242 cd05294 LDH-like_MDH_nadp A la 97.1 0.0022 4.8E-08 64.4 9.4 72 4-79 1-82 (309)
243 PRK14189 bifunctional 5,10-met 97.1 0.0016 3.4E-08 64.1 8.0 74 4-107 159-233 (285)
244 TIGR02354 thiF_fam2 thiamine b 97.1 0.0044 9.5E-08 58.2 10.7 33 3-35 21-54 (200)
245 PRK02318 mannitol-1-phosphate 97.1 0.0022 4.7E-08 66.4 9.4 112 4-117 1-134 (381)
246 cd05191 NAD_bind_amino_acid_DH 97.1 0.0034 7.5E-08 50.3 8.5 63 3-104 23-86 (86)
247 TIGR03215 ac_ald_DH_ac acetald 97.1 0.0033 7.1E-08 62.1 9.9 93 4-107 2-98 (285)
248 cd05311 NAD_bind_2_malic_enz N 97.0 0.005 1.1E-07 58.9 10.5 106 4-124 26-145 (226)
249 TIGR00561 pntA NAD(P) transhyd 97.0 0.003 6.5E-08 67.1 9.5 99 4-106 165-286 (511)
250 PRK00683 murD UDP-N-acetylmura 97.0 0.0081 1.8E-07 63.0 12.8 115 1-125 1-131 (418)
251 PRK15076 alpha-galactosidase; 97.0 0.0032 7E-08 66.1 9.6 74 4-80 2-86 (431)
252 PRK04207 glyceraldehyde-3-phos 97.0 0.0057 1.2E-07 62.3 11.0 97 3-106 1-111 (341)
253 PRK12548 shikimate 5-dehydroge 97.0 0.0056 1.2E-07 60.9 10.5 121 4-127 127-257 (289)
254 COG0169 AroE Shikimate 5-dehyd 96.9 0.0046 1E-07 60.9 9.6 118 4-128 127-248 (283)
255 TIGR02717 AcCoA-syn-alpha acet 96.9 0.0055 1.2E-07 64.8 10.8 109 3-128 7-127 (447)
256 PRK10792 bifunctional 5,10-met 96.9 0.0037 8.1E-08 61.4 8.4 74 4-107 160-234 (285)
257 PLN02602 lactate dehydrogenase 96.9 0.012 2.5E-07 60.1 12.3 98 4-106 38-156 (350)
258 PRK14106 murD UDP-N-acetylmura 96.9 0.021 4.5E-07 60.4 14.7 72 3-78 5-77 (450)
259 COG0002 ArgC Acetylglutamate s 96.8 0.004 8.7E-08 62.2 8.2 99 3-107 2-104 (349)
260 COG2910 Putative NADH-flavin r 96.8 0.005 1.1E-07 56.0 8.0 72 4-80 1-73 (211)
261 PRK14027 quinate/shikimate deh 96.8 0.0077 1.7E-07 59.7 10.2 120 4-127 128-250 (283)
262 PF02882 THF_DHG_CYH_C: Tetrah 96.8 0.0045 9.7E-08 55.8 7.6 75 4-108 37-112 (160)
263 PRK12475 thiamine/molybdopteri 96.8 0.015 3.3E-07 59.1 12.3 124 3-132 24-151 (338)
264 PRK06718 precorrin-2 dehydroge 96.8 0.015 3.2E-07 54.7 11.4 79 4-91 11-91 (202)
265 PRK00961 H(2)-dependent methyl 96.8 0.077 1.7E-06 51.2 15.6 105 53-165 128-237 (342)
266 PRK09424 pntA NAD(P) transhydr 96.7 0.008 1.7E-07 64.1 10.2 43 4-46 166-208 (509)
267 TIGR02356 adenyl_thiF thiazole 96.7 0.026 5.6E-07 53.1 12.5 123 4-132 22-146 (202)
268 PRK01710 murD UDP-N-acetylmura 96.7 0.016 3.5E-07 61.5 12.4 33 4-36 15-47 (458)
269 PRK06392 homoserine dehydrogen 96.7 0.013 2.8E-07 59.1 10.6 128 4-134 1-148 (326)
270 TIGR01723 hmd_TIGR 5,10-methen 96.7 0.084 1.8E-06 51.1 15.3 108 53-165 126-235 (340)
271 cd05290 LDH_3 A subgroup of L- 96.6 0.016 3.5E-07 58.0 11.0 71 5-79 1-78 (307)
272 PF13460 NAD_binding_10: NADH( 96.6 0.011 2.4E-07 53.9 9.1 70 6-81 1-72 (183)
273 PRK08328 hypothetical protein; 96.6 0.018 3.8E-07 55.4 10.7 123 4-132 28-153 (231)
274 cd01487 E1_ThiF_like E1_ThiF_l 96.6 0.0099 2.2E-07 54.5 8.5 121 5-131 1-123 (174)
275 PRK12749 quinate/shikimate deh 96.6 0.019 4.2E-07 57.0 11.1 120 4-127 125-254 (288)
276 PRK14192 bifunctional 5,10-met 96.6 0.0065 1.4E-07 60.1 7.7 74 4-107 160-234 (283)
277 COG0771 MurD UDP-N-acetylmuram 96.6 0.012 2.6E-07 61.6 9.8 125 3-134 7-148 (448)
278 cd01079 NAD_bind_m-THF_DH NAD 96.6 0.0063 1.4E-07 56.2 6.9 89 4-107 63-159 (197)
279 cd01337 MDH_glyoxysomal_mitoch 96.6 0.012 2.6E-07 59.0 9.4 95 4-107 1-120 (310)
280 PRK14191 bifunctional 5,10-met 96.5 0.008 1.7E-07 59.1 7.8 74 4-107 158-232 (285)
281 PF00899 ThiF: ThiF family; I 96.5 0.0032 6.9E-08 55.1 4.6 123 4-132 3-127 (135)
282 PRK00141 murD UDP-N-acetylmura 96.5 0.044 9.5E-07 58.4 14.1 65 3-76 15-81 (473)
283 PLN02968 Probable N-acetyl-gam 96.5 0.0062 1.3E-07 62.8 7.2 98 3-107 38-137 (381)
284 COG1064 AdhP Zn-dependent alco 96.5 0.015 3.4E-07 58.4 9.6 92 4-105 168-260 (339)
285 PRK14982 acyl-ACP reductase; P 96.5 0.011 2.3E-07 59.9 8.4 111 3-131 155-268 (340)
286 PF02629 CoA_binding: CoA bind 96.5 0.0027 5.8E-08 52.2 3.4 79 4-92 4-84 (96)
287 TIGR01759 MalateDH-SF1 malate 96.5 0.021 4.6E-07 57.6 10.5 100 3-105 3-130 (323)
288 cd01338 MDH_choloroplast_like 96.4 0.013 2.8E-07 59.1 8.7 100 3-105 2-129 (322)
289 TIGR01470 cysG_Nterm siroheme 96.4 0.038 8.3E-07 52.0 11.3 67 4-80 10-80 (205)
290 PRK08644 thiamine biosynthesis 96.4 0.013 2.9E-07 55.4 8.0 120 4-129 29-150 (212)
291 PRK14176 bifunctional 5,10-met 96.4 0.014 3E-07 57.5 8.3 73 4-106 165-238 (287)
292 PRK05442 malate dehydrogenase; 96.4 0.026 5.6E-07 57.1 10.5 99 3-105 4-131 (326)
293 PRK06719 precorrin-2 dehydroge 96.4 0.028 6.2E-07 50.5 9.7 77 4-91 14-91 (157)
294 TIGR01772 MDH_euk_gproteo mala 96.4 0.012 2.7E-07 58.9 8.2 96 5-107 1-119 (312)
295 PRK14183 bifunctional 5,10-met 96.4 0.012 2.7E-07 57.7 7.8 74 4-107 158-232 (281)
296 PRK11861 bifunctional prephena 96.4 0.024 5.2E-07 63.1 11.2 98 73-178 1-111 (673)
297 cd05212 NAD_bind_m-THF_DH_Cycl 96.4 0.019 4.2E-07 50.6 8.4 74 4-107 29-103 (140)
298 PRK05678 succinyl-CoA syntheta 96.3 0.034 7.3E-07 55.2 10.9 116 3-131 8-125 (291)
299 PRK07688 thiamine/molybdopteri 96.3 0.026 5.6E-07 57.4 10.4 124 3-132 24-151 (339)
300 PRK03369 murD UDP-N-acetylmura 96.3 0.059 1.3E-06 57.7 13.5 121 4-134 13-155 (488)
301 PTZ00325 malate dehydrogenase; 96.3 0.02 4.4E-07 57.6 9.3 74 3-79 8-86 (321)
302 cd01485 E1-1_like Ubiquitin ac 96.3 0.018 4E-07 53.9 8.5 125 3-132 19-148 (198)
303 PF03447 NAD_binding_3: Homose 96.3 0.035 7.6E-07 47.1 9.5 105 10-125 1-114 (117)
304 PF10100 DUF2338: Uncharacteri 96.3 0.26 5.7E-06 50.3 16.9 157 4-165 2-195 (429)
305 PRK14170 bifunctional 5,10-met 96.3 0.016 3.5E-07 56.9 8.1 74 4-107 158-232 (284)
306 PF03720 UDPG_MGDP_dh_C: UDP-g 96.3 0.017 3.8E-07 48.3 7.3 87 14-107 18-104 (106)
307 TIGR01019 sucCoAalpha succinyl 96.2 0.038 8.3E-07 54.6 10.8 113 4-129 7-121 (286)
308 PRK08664 aspartate-semialdehyd 96.2 0.017 3.6E-07 59.1 8.5 99 1-107 1-110 (349)
309 PLN00106 malate dehydrogenase 96.2 0.022 4.8E-07 57.4 9.2 73 4-79 19-96 (323)
310 PRK09414 glutamate dehydrogena 96.2 0.038 8.3E-07 57.9 11.1 117 4-127 233-365 (445)
311 PRK15059 tartronate semialdehy 96.2 0.048 1E-06 54.3 11.5 105 321-440 162-266 (292)
312 PRK14874 aspartate-semialdehyd 96.2 0.01 2.3E-07 60.2 6.8 91 4-107 2-97 (334)
313 PLN02477 glutamate dehydrogena 96.2 0.036 7.8E-07 57.6 10.8 115 4-128 207-333 (410)
314 PRK05472 redox-sensing transcr 96.2 0.0069 1.5E-07 57.4 5.2 79 4-90 85-166 (213)
315 PRK05086 malate dehydrogenase; 96.2 0.046 9.9E-07 55.0 11.3 97 4-107 1-121 (312)
316 PLN00112 malate dehydrogenase 96.2 0.034 7.3E-07 58.3 10.5 99 4-105 101-227 (444)
317 PRK14177 bifunctional 5,10-met 96.1 0.021 4.5E-07 56.1 8.2 74 4-107 160-234 (284)
318 PRK14173 bifunctional 5,10-met 96.1 0.021 4.5E-07 56.3 8.1 74 4-107 156-230 (287)
319 PRK14172 bifunctional 5,10-met 96.1 0.02 4.3E-07 56.1 7.9 74 4-107 159-233 (278)
320 PRK14186 bifunctional 5,10-met 96.1 0.02 4.4E-07 56.6 8.1 74 4-107 159-233 (297)
321 PRK01390 murD UDP-N-acetylmura 96.1 0.084 1.8E-06 56.0 13.4 39 4-42 10-48 (460)
322 COG0190 FolD 5,10-methylene-te 96.1 0.019 4.1E-07 55.9 7.5 75 4-108 157-232 (283)
323 PRK02472 murD UDP-N-acetylmura 96.1 0.11 2.3E-06 55.0 14.0 114 4-126 6-138 (447)
324 PRK14169 bifunctional 5,10-met 96.1 0.021 4.6E-07 56.1 7.9 74 4-107 157-231 (282)
325 cd00757 ThiF_MoeB_HesA_family 96.1 0.029 6.4E-07 53.7 8.8 124 3-132 21-146 (228)
326 PRK05671 aspartate-semialdehyd 96.1 0.013 2.9E-07 59.4 6.7 95 1-107 1-100 (336)
327 COG0460 ThrA Homoserine dehydr 96.1 0.03 6.5E-07 56.1 9.0 127 1-135 1-146 (333)
328 PRK14166 bifunctional 5,10-met 96.1 0.022 4.8E-07 55.9 7.9 74 4-107 158-232 (282)
329 PRK14187 bifunctional 5,10-met 96.0 0.022 4.8E-07 56.2 7.9 74 4-107 161-235 (294)
330 PRK02006 murD UDP-N-acetylmura 96.0 0.11 2.3E-06 55.9 13.8 117 4-126 8-151 (498)
331 PRK14180 bifunctional 5,10-met 96.0 0.023 5E-07 55.8 7.8 74 4-107 159-233 (282)
332 CHL00194 ycf39 Ycf39; Provisio 96.0 0.024 5.1E-07 57.0 8.2 70 4-78 1-73 (317)
333 COG2344 AT-rich DNA-binding pr 96.0 0.013 2.9E-07 53.2 5.6 82 3-92 84-168 (211)
334 PRK08223 hypothetical protein; 96.0 0.036 7.9E-07 54.6 9.1 125 4-133 28-155 (287)
335 PLN02516 methylenetetrahydrofo 96.0 0.024 5.3E-07 56.1 7.9 74 4-107 168-242 (299)
336 PRK11559 garR tartronate semia 96.0 0.11 2.4E-06 51.6 12.9 105 321-440 165-269 (296)
337 TIGR01087 murD UDP-N-acetylmur 96.0 0.1 2.2E-06 54.9 13.2 121 5-134 1-140 (433)
338 PRK09599 6-phosphogluconate de 96.0 0.013 2.8E-07 58.6 6.1 94 194-297 181-277 (301)
339 PRK03803 murD UDP-N-acetylmura 96.0 0.096 2.1E-06 55.4 12.9 121 5-134 8-146 (448)
340 COG0039 Mdh Malate/lactate deh 95.9 0.042 9E-07 54.8 9.3 36 4-39 1-38 (313)
341 PRK12550 shikimate 5-dehydroge 95.9 0.036 7.9E-07 54.5 8.9 109 4-127 123-237 (272)
342 PRK01438 murD UDP-N-acetylmura 95.9 0.13 2.8E-06 54.9 13.6 115 4-125 17-151 (480)
343 cd01492 Aos1_SUMO Ubiquitin ac 95.9 0.052 1.1E-06 50.8 9.2 121 4-132 22-145 (197)
344 PRK14182 bifunctional 5,10-met 95.8 0.031 6.6E-07 54.9 7.9 74 4-107 158-232 (282)
345 PRK14190 bifunctional 5,10-met 95.8 0.031 6.7E-07 55.0 7.8 74 4-107 159-233 (284)
346 PRK14171 bifunctional 5,10-met 95.8 0.029 6.3E-07 55.3 7.6 74 4-107 160-234 (288)
347 PRK00676 hemA glutamyl-tRNA re 95.8 0.026 5.6E-07 57.0 7.2 34 4-37 175-209 (338)
348 PRK14193 bifunctional 5,10-met 95.8 0.036 7.8E-07 54.6 8.0 74 4-107 159-235 (284)
349 PRK05690 molybdopterin biosynt 95.8 0.069 1.5E-06 51.7 10.0 123 4-132 33-157 (245)
350 TIGR01771 L-LDH-NAD L-lactate 95.8 0.059 1.3E-06 53.8 9.8 95 8-106 1-115 (299)
351 PF05368 NmrA: NmrA-like famil 95.8 0.061 1.3E-06 51.3 9.6 71 6-80 1-75 (233)
352 PLN02520 bifunctional 3-dehydr 95.8 0.045 9.8E-07 59.1 9.6 113 4-126 380-495 (529)
353 TIGR02355 moeB molybdopterin s 95.7 0.058 1.3E-06 52.1 9.3 124 4-133 25-150 (240)
354 cd00704 MDH Malate dehydrogena 95.7 0.033 7.1E-07 56.3 7.9 98 5-105 2-127 (323)
355 PRK14178 bifunctional 5,10-met 95.7 0.033 7.1E-07 54.7 7.4 74 4-107 153-227 (279)
356 PRK05884 short chain dehydroge 95.7 0.18 3.9E-06 47.8 12.4 42 4-45 1-43 (223)
357 PLN02897 tetrahydrofolate dehy 95.6 0.039 8.5E-07 55.5 7.8 74 4-107 215-289 (345)
358 TIGR01757 Malate-DH_plant mala 95.6 0.13 2.8E-06 53.1 11.7 99 4-105 45-171 (387)
359 cd05313 NAD_bind_2_Glu_DH NAD( 95.6 0.22 4.8E-06 48.3 12.6 118 4-128 39-176 (254)
360 PRK14181 bifunctional 5,10-met 95.6 0.045 9.8E-07 53.9 7.9 74 4-107 154-232 (287)
361 COG2084 MmsB 3-hydroxyisobutyr 95.6 0.15 3.2E-06 50.3 11.5 105 321-441 164-269 (286)
362 PLN02616 tetrahydrofolate dehy 95.6 0.043 9.2E-07 55.5 7.8 74 4-107 232-306 (364)
363 PRK05653 fabG 3-ketoacyl-(acyl 95.6 0.083 1.8E-06 50.2 9.7 41 4-44 6-47 (246)
364 PRK08374 homoserine dehydrogen 95.6 0.14 2.9E-06 52.1 11.6 128 3-135 2-155 (336)
365 PRK08762 molybdopterin biosynt 95.5 0.14 2.9E-06 53.0 11.8 123 4-132 136-260 (376)
366 PRK05597 molybdopterin biosynt 95.5 0.17 3.6E-06 51.9 12.2 124 4-133 29-154 (355)
367 PRK00421 murC UDP-N-acetylmura 95.5 0.15 3.2E-06 54.2 12.3 110 4-123 8-134 (461)
368 PRK11863 N-acetyl-gamma-glutam 95.5 0.054 1.2E-06 54.3 8.3 81 3-107 2-84 (313)
369 PRK10537 voltage-gated potassi 95.5 0.18 3.9E-06 52.3 12.3 112 5-129 242-356 (393)
370 PRK04308 murD UDP-N-acetylmura 95.4 0.21 4.6E-06 52.7 13.1 116 3-126 5-140 (445)
371 PRK14573 bifunctional D-alanyl 95.4 0.14 3.1E-06 58.3 12.5 111 3-123 4-131 (809)
372 TIGR03649 ergot_EASG ergot alk 95.4 0.071 1.5E-06 52.5 8.7 69 5-80 1-78 (285)
373 cd01336 MDH_cytoplasmic_cytoso 95.4 0.1 2.3E-06 52.7 9.9 100 3-105 2-129 (325)
374 PRK06182 short chain dehydroge 95.3 0.13 2.8E-06 50.2 10.4 83 1-106 1-84 (273)
375 PRK12429 3-hydroxybutyrate deh 95.3 0.1 2.3E-06 50.1 9.7 87 3-106 4-91 (258)
376 PRK14185 bifunctional 5,10-met 95.3 0.061 1.3E-06 53.2 7.9 74 4-107 158-236 (293)
377 PRK12490 6-phosphogluconate de 95.3 0.03 6.6E-07 55.9 6.0 75 217-297 201-276 (299)
378 PRK14851 hypothetical protein; 95.3 0.072 1.6E-06 59.0 9.2 124 4-132 44-170 (679)
379 TIGR01505 tartro_sem_red 2-hyd 95.3 0.3 6.5E-06 48.4 12.9 105 321-440 162-266 (291)
380 PRK14030 glutamate dehydrogena 95.3 0.19 4.1E-06 52.7 11.6 118 4-128 229-366 (445)
381 PRK02705 murD UDP-N-acetylmura 95.2 0.28 6.1E-06 52.0 13.3 33 5-37 2-34 (459)
382 TIGR01546 GAPDH-II_archae glyc 95.2 0.13 2.8E-06 51.9 10.1 39 6-44 1-41 (333)
383 COG0289 DapB Dihydrodipicolina 95.2 0.22 4.9E-06 48.1 11.1 115 3-129 2-124 (266)
384 PF02056 Glyco_hydro_4: Family 95.2 0.11 2.3E-06 48.0 8.6 73 5-80 1-84 (183)
385 PLN02383 aspartate semialdehyd 95.2 0.051 1.1E-06 55.3 7.2 90 3-107 7-103 (344)
386 TIGR01692 HIBADH 3-hydroxyisob 95.2 0.16 3.5E-06 50.3 10.7 109 321-440 159-270 (288)
387 PRK07877 hypothetical protein; 95.2 0.069 1.5E-06 59.4 8.6 124 4-134 108-233 (722)
388 PRK13394 3-hydroxybutyrate deh 95.2 0.11 2.4E-06 50.1 9.3 84 4-106 8-94 (262)
389 TIGR01082 murC UDP-N-acetylmur 95.2 0.22 4.9E-06 52.6 12.2 109 5-123 1-126 (448)
390 PRK07878 molybdopterin biosynt 95.1 0.089 1.9E-06 54.6 8.9 124 4-133 43-168 (392)
391 PRK07236 hypothetical protein; 95.1 0.028 6.1E-07 58.1 5.2 37 1-37 4-40 (386)
392 PRK06180 short chain dehydroge 95.1 0.14 3.1E-06 50.1 10.0 84 3-106 4-88 (277)
393 PRK14168 bifunctional 5,10-met 95.1 0.08 1.7E-06 52.5 8.0 74 4-107 162-240 (297)
394 PF03059 NAS: Nicotianamine sy 95.1 0.13 2.8E-06 50.5 9.3 103 4-106 122-232 (276)
395 PRK14852 hypothetical protein; 95.1 0.091 2E-06 59.7 9.3 125 4-133 333-460 (989)
396 PRK15461 NADH-dependent gamma- 95.0 0.3 6.5E-06 48.7 11.8 103 321-439 164-268 (296)
397 PF00208 ELFV_dehydrog: Glutam 94.9 0.19 4.2E-06 48.6 10.0 118 3-128 32-169 (244)
398 PLN03209 translocon at the inn 94.9 0.67 1.5E-05 50.2 15.0 76 4-79 81-169 (576)
399 PRK14167 bifunctional 5,10-met 94.9 0.095 2.1E-06 52.0 7.9 74 4-107 158-236 (297)
400 PRK08040 putative semialdehyde 94.9 0.043 9.4E-07 55.6 5.7 94 2-107 3-100 (336)
401 TIGR01758 MDH_euk_cyt malate d 94.9 0.082 1.8E-06 53.4 7.7 33 5-37 1-41 (324)
402 TIGR01296 asd_B aspartate-semi 94.9 0.038 8.3E-07 56.2 5.3 90 5-107 1-95 (339)
403 PRK07326 short chain dehydroge 94.9 0.16 3.5E-06 48.1 9.4 41 4-44 7-48 (237)
404 PRK06057 short chain dehydroge 94.9 0.24 5.1E-06 47.8 10.6 43 1-43 5-48 (255)
405 COG1486 CelF Alpha-galactosida 94.9 0.2 4.4E-06 52.0 10.3 77 1-80 1-88 (442)
406 PLN02353 probable UDP-glucose 94.8 0.23 5E-06 52.8 11.1 115 4-129 325-466 (473)
407 TIGR00978 asd_EA aspartate-sem 94.8 0.096 2.1E-06 53.4 8.1 97 4-107 1-107 (341)
408 PRK07454 short chain dehydroge 94.8 0.17 3.8E-06 48.2 9.5 41 4-44 7-48 (241)
409 PRK12828 short chain dehydroge 94.8 0.28 6E-06 46.4 10.8 84 4-106 8-92 (239)
410 PRK10538 malonic semialdehyde 94.8 0.23 4.9E-06 47.7 10.2 40 4-43 1-41 (248)
411 PRK06153 hypothetical protein; 94.8 0.22 4.8E-06 51.0 10.2 119 4-131 177-300 (393)
412 PRK07774 short chain dehydroge 94.8 0.19 4.2E-06 48.0 9.6 86 4-106 7-93 (250)
413 COG1648 CysG Siroheme synthase 94.7 0.5 1.1E-05 44.6 12.0 76 4-87 13-89 (210)
414 PLN00141 Tic62-NAD(P)-related 94.7 0.11 2.4E-06 50.2 7.9 40 3-42 17-57 (251)
415 KOG3007 Mu-crystallin [Amino a 94.7 0.16 3.4E-06 48.9 8.4 115 6-129 141-261 (333)
416 PRK07890 short chain dehydroge 94.7 0.19 4.2E-06 48.3 9.5 88 2-106 4-92 (258)
417 PRK05866 short chain dehydroge 94.7 0.21 4.6E-06 49.5 9.9 86 4-106 41-127 (293)
418 PRK11908 NAD-dependent epimera 94.6 0.2 4.4E-06 50.8 9.9 38 4-41 2-41 (347)
419 PRK12409 D-amino acid dehydrog 94.6 0.042 9.1E-07 57.2 5.0 33 4-36 2-34 (410)
420 PRK04690 murD UDP-N-acetylmura 94.6 0.48 1E-05 50.5 13.1 33 4-36 9-41 (468)
421 cd05298 GH4_GlvA_pagL_like Gly 94.6 0.24 5.3E-06 52.1 10.6 74 4-80 1-85 (437)
422 cd01491 Ube1_repeat1 Ubiquitin 94.6 0.14 3E-06 50.7 8.2 120 3-132 19-140 (286)
423 PRK05993 short chain dehydroge 94.6 0.21 4.6E-06 48.9 9.7 43 1-43 1-45 (277)
424 PRK08306 dipicolinate synthase 94.6 0.2 4.4E-06 49.9 9.5 108 4-129 3-121 (296)
425 TIGR03736 PRTRC_ThiF PRTRC sys 94.6 0.24 5.2E-06 47.8 9.6 34 3-36 11-55 (244)
426 PRK08163 salicylate hydroxylas 94.6 0.045 9.7E-07 56.6 5.0 37 1-37 1-38 (396)
427 cd00755 YgdL_like Family of ac 94.6 0.24 5.3E-06 47.5 9.6 125 3-132 11-137 (231)
428 COG0300 DltE Short-chain dehyd 94.5 0.26 5.7E-06 48.1 9.6 85 3-103 6-91 (265)
429 PRK08309 short chain dehydroge 94.5 0.49 1.1E-05 43.4 11.1 41 4-44 1-41 (177)
430 TIGR01851 argC_other N-acetyl- 94.5 0.14 2.9E-06 51.2 7.8 80 4-107 2-83 (310)
431 PRK12939 short chain dehydroge 94.4 0.24 5.3E-06 47.2 9.5 41 4-44 8-49 (250)
432 PRK14184 bifunctional 5,10-met 94.4 0.14 3E-06 50.6 7.6 74 4-107 158-236 (286)
433 PRK00517 prmA ribosomal protei 94.4 0.51 1.1E-05 45.8 11.7 114 4-127 121-235 (250)
434 PRK05600 thiamine biosynthesis 94.4 0.15 3.2E-06 52.6 8.1 123 4-132 42-166 (370)
435 PRK05786 fabG 3-ketoacyl-(acyl 94.4 0.36 7.9E-06 45.7 10.4 41 4-44 6-47 (238)
436 PRK07523 gluconate 5-dehydroge 94.4 0.28 6.2E-06 47.2 9.8 41 4-44 11-52 (255)
437 PRK08219 short chain dehydroge 94.3 0.17 3.7E-06 47.5 7.9 42 1-43 1-43 (227)
438 TIGR03855 NAD_NadX aspartate d 94.3 0.35 7.7E-06 46.3 10.0 87 29-127 5-94 (229)
439 PLN00016 RNA-binding protein; 94.3 0.31 6.8E-06 50.2 10.5 36 3-38 52-92 (378)
440 PRK12826 3-ketoacyl-(acyl-carr 94.3 0.23 5E-06 47.4 8.9 42 3-44 6-48 (251)
441 COG1063 Tdh Threonine dehydrog 94.3 0.27 5.9E-06 50.2 9.9 93 5-106 171-271 (350)
442 PRK08263 short chain dehydroge 94.3 0.34 7.3E-06 47.4 10.2 43 1-43 1-44 (275)
443 PRK07024 short chain dehydroge 94.3 0.24 5.2E-06 47.8 9.1 85 4-106 3-88 (257)
444 PRK14174 bifunctional 5,10-met 94.2 0.17 3.7E-06 50.2 7.8 74 4-107 160-238 (295)
445 PRK15116 sulfur acceptor prote 94.2 0.38 8.3E-06 47.2 10.1 121 4-129 31-153 (268)
446 PRK08265 short chain dehydroge 94.1 0.4 8.7E-06 46.5 10.3 41 4-44 7-48 (261)
447 COG2227 UbiG 2-polyprenyl-3-me 94.1 0.39 8.5E-06 45.8 9.6 94 4-103 61-160 (243)
448 PRK01368 murD UDP-N-acetylmura 94.1 0.6 1.3E-05 49.5 12.3 121 4-133 7-141 (454)
449 PRK07825 short chain dehydroge 94.1 0.42 9.1E-06 46.5 10.5 42 3-44 5-47 (273)
450 PRK05732 2-octaprenyl-6-methox 94.1 0.063 1.4E-06 55.4 4.8 35 1-35 1-38 (395)
451 PRK06124 gluconate 5-dehydroge 94.1 0.35 7.6E-06 46.5 9.8 41 4-44 12-53 (256)
452 PRK07109 short chain dehydroge 94.0 0.35 7.5E-06 49.1 10.0 84 4-106 9-95 (334)
453 PRK03806 murD UDP-N-acetylmura 94.0 0.92 2E-05 47.8 13.6 114 4-126 7-135 (438)
454 PRK08213 gluconate 5-dehydroge 94.0 0.35 7.6E-06 46.7 9.6 86 4-106 13-99 (259)
455 COG0026 PurK Phosphoribosylami 94.0 0.08 1.7E-06 53.4 5.1 37 4-40 2-38 (375)
456 PRK06200 2,3-dihydroxy-2,3-dih 94.0 0.45 9.8E-06 46.0 10.4 83 4-106 7-90 (263)
457 PRK07074 short chain dehydroge 94.0 0.49 1.1E-05 45.5 10.6 41 4-44 3-44 (257)
458 PRK06728 aspartate-semialdehyd 94.0 0.13 2.9E-06 52.2 6.7 89 4-107 6-102 (347)
459 PF13241 NAD_binding_7: Putati 94.0 0.23 5E-06 41.2 7.1 72 3-89 7-79 (103)
460 PRK08013 oxidoreductase; Provi 93.9 0.068 1.5E-06 55.6 4.7 37 1-37 1-37 (400)
461 cd05296 GH4_P_beta_glucosidase 93.9 0.83 1.8E-05 47.9 12.7 74 4-80 1-86 (419)
462 PRK09126 hypothetical protein; 93.9 0.069 1.5E-06 55.1 4.8 37 1-37 1-37 (392)
463 PRK08017 oxidoreductase; Provi 93.9 0.39 8.5E-06 46.1 9.8 39 4-42 3-42 (256)
464 PRK06101 short chain dehydroge 93.9 0.41 9E-06 45.7 9.8 41 4-44 2-43 (240)
465 PRK05867 short chain dehydroge 93.9 0.34 7.4E-06 46.6 9.2 41 4-44 10-51 (253)
466 PF13450 NAD_binding_8: NAD(P) 93.9 0.092 2E-06 40.1 4.1 30 8-37 1-30 (68)
467 KOG1399 Flavin-containing mono 93.8 0.066 1.4E-06 56.4 4.4 36 2-37 5-40 (448)
468 PRK05868 hypothetical protein; 93.8 0.075 1.6E-06 54.8 4.8 35 3-37 1-35 (372)
469 PRK07814 short chain dehydroge 93.8 0.39 8.5E-06 46.6 9.6 85 4-105 11-96 (263)
470 PF00070 Pyr_redox: Pyridine n 93.8 0.12 2.5E-06 40.6 4.8 33 5-37 1-33 (80)
471 cd05197 GH4_glycoside_hydrolas 93.8 0.71 1.5E-05 48.5 12.0 74 4-80 1-85 (425)
472 PRK08849 2-octaprenyl-3-methyl 93.8 0.081 1.8E-06 54.7 5.0 36 1-36 1-36 (384)
473 PRK07411 hypothetical protein; 93.8 0.22 4.9E-06 51.6 8.2 124 4-133 39-164 (390)
474 PRK07067 sorbitol dehydrogenas 93.8 0.49 1.1E-05 45.6 10.1 41 4-44 7-48 (257)
475 PRK06172 short chain dehydroge 93.7 0.4 8.7E-06 46.0 9.5 41 4-44 8-49 (253)
476 PRK06753 hypothetical protein; 93.7 0.08 1.7E-06 54.3 4.8 35 4-38 1-35 (373)
477 PRK06139 short chain dehydroge 93.7 0.41 8.9E-06 48.5 9.9 84 4-106 8-94 (330)
478 PRK11259 solA N-methyltryptoph 93.7 0.079 1.7E-06 54.3 4.8 36 1-36 1-36 (376)
479 PRK05693 short chain dehydroge 93.7 0.5 1.1E-05 46.0 10.3 80 4-106 2-82 (274)
480 COG2242 CobL Precorrin-6B meth 93.7 1.6 3.5E-05 40.1 12.5 118 10-133 44-164 (187)
481 PRK12829 short chain dehydroge 93.7 0.55 1.2E-05 45.2 10.3 41 4-44 12-53 (264)
482 PRK07060 short chain dehydroge 93.7 0.27 6E-06 46.8 8.1 41 4-44 10-51 (245)
483 PRK00711 D-amino acid dehydrog 93.6 0.085 1.8E-06 54.9 4.9 34 4-37 1-34 (416)
484 TIGR03325 BphB_TodD cis-2,3-di 93.6 0.5 1.1E-05 45.7 10.0 40 4-43 6-46 (262)
485 PRK08217 fabG 3-ketoacyl-(acyl 93.6 0.44 9.6E-06 45.4 9.5 41 4-44 6-47 (253)
486 PRK06196 oxidoreductase; Provi 93.6 0.54 1.2E-05 47.1 10.5 81 4-105 27-108 (315)
487 PRK08340 glucose-1-dehydrogena 93.6 0.41 8.8E-06 46.3 9.3 84 4-105 1-85 (259)
488 PRK07231 fabG 3-ketoacyl-(acyl 93.6 0.38 8.3E-06 45.9 9.0 41 4-44 6-47 (251)
489 PRK04663 murD UDP-N-acetylmura 93.6 0.81 1.8E-05 48.2 12.2 118 4-133 8-145 (438)
490 COG0334 GdhA Glutamate dehydro 93.6 0.46 1E-05 48.8 9.7 114 4-127 208-333 (411)
491 PRK00377 cbiT cobalt-precorrin 93.6 1.3 2.8E-05 41.2 12.2 116 4-123 42-163 (198)
492 cd01489 Uba2_SUMO Ubiquitin ac 93.5 0.29 6.3E-06 49.1 8.2 123 5-132 1-125 (312)
493 PF01494 FAD_binding_3: FAD bi 93.5 0.086 1.9E-06 53.0 4.5 34 4-37 2-35 (356)
494 PLN03075 nicotianamine synthas 93.5 0.9 2E-05 45.1 11.5 102 3-104 124-233 (296)
495 TIGR02964 xanthine_xdhC xanthi 93.5 0.71 1.5E-05 44.7 10.6 111 4-123 101-212 (246)
496 PRK08267 short chain dehydroge 93.5 0.66 1.4E-05 44.8 10.5 41 4-44 2-43 (260)
497 PRK06482 short chain dehydroge 93.5 0.58 1.3E-05 45.6 10.2 83 4-106 3-86 (276)
498 PRK08643 acetoin reductase; Va 93.4 0.46 9.9E-06 45.7 9.3 85 5-106 4-89 (256)
499 PRK06179 short chain dehydroge 93.4 0.34 7.3E-06 47.1 8.4 81 1-106 1-83 (270)
500 PRK06949 short chain dehydroge 93.4 0.61 1.3E-05 44.8 10.1 41 4-44 10-51 (258)
No 1
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.4e-130 Score=949.61 Aligned_cols=471 Identities=58% Similarity=0.950 Sum_probs=454.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+.+.||+||+|+||++||+|++++||+|.+|||+++++++|.+.....+ ++.++.|++|+++.|++|+.|+++|.++
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG 78 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAG 78 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecC
Confidence 66778999999999999999999999999999999999999998765321 6889999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
..+++++++|+|+|.+|+||||.+|+.+.+|.|+.+.+.++|++|++++||||+++|+.||++|+||++++|+.++|+|+
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~ 158 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILT 158 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
+++++. +++|||.|+|+.|+|||||||||+|+|+.||+++|+|.+++...|++.+++.++|++||+|.++|||++|+.+
T Consensus 159 ~IaAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~ 237 (473)
T COG0362 159 KIAAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITAD 237 (473)
T ss_pred HHHhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 999997 6999999999999999999999999999999999999999997779999999999999999999999999999
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccc
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQT 320 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 320 (484)
+|+.+|..++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|++|++|..+++.|++|.. ..+
T Consensus 238 IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-----~~~ 312 (473)
T COG0362 238 ILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKL-----GEP 312 (473)
T ss_pred HHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-----CCC
Confidence 999887666669999999999999999999999999999999999999999999999999999999998865 236
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
+++..|+++|++|+|+++|++|+|||.+|++||++|+|++++.+|+++||+||||||.||+.|.++|.++|++.||+++|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccccCC
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIA 479 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~ 479 (484)
+|.+.+++..++||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||+|||+|+|++|.||++|++.+
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998754
No 2
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-122 Score=882.21 Aligned_cols=475 Identities=61% Similarity=0.997 Sum_probs=454.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++||+|||++||.+|++|++++||.|++|||+.++++++.+...+ +.++.+..|+++++..+++|++|++.|+++.++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 689999999999999999999999999999999999999876554 346788899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+..+++|.|+|.+|++|||.+|+.+++|.++.+.+.++|+-|++++||||+++|+.||++|+||++++|..++++|+.++
T Consensus 85 D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 85 DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIA 164 (487)
T ss_pred HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
+++.+++|||.|+|+.|+|||||||||+|+|+.||+++|+|.++++.+|++.+++.++|+.||.+.+.||+++|+.+||+
T Consensus 165 akv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk 244 (487)
T KOG2653|consen 165 AKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILK 244 (487)
T ss_pred HHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhh
Confidence 99888999999999999999999999999999999999999999997779999999999999999999999999999998
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
-+|+ .+.+++++|+|.++|||||+||++.|.++|+|+|+|.+||++|++|++|++|..+++.|.+|..++ ....+.
T Consensus 245 ~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~---~~~~~k 320 (487)
T KOG2653|consen 245 FKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR---DMGDDK 320 (487)
T ss_pred eecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---hhhhHH
Confidence 8764 344899999999999999999999999999999999999999999999999999999999987532 233358
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
..|++++++|+|+++|++|+|||+||++++++++|++|+..|+++||+||||||.||+.|.++|+++|+|+|+|+|+.|.
T Consensus 321 ~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~ 400 (487)
T KOG2653|consen 321 KQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFA 400 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCC-ccccccccCCccC
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSG-SFHTEWFKIAKQS 482 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~~~ 482 (484)
+++.+.+.+||++|..|++.|||+|++|+||+|||+||++++|+||+||||||||+|||++++++| .+|++|++.+.++
T Consensus 401 ~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~ 480 (487)
T KOG2653|consen 401 KAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNV 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999977777
Q ss_pred CC
Q 011501 483 KI 484 (484)
Q Consensus 483 ~~ 484 (484)
+|
T Consensus 481 s~ 482 (487)
T KOG2653|consen 481 SS 482 (487)
T ss_pred cc
Confidence 64
No 3
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=100.00 E-value=7.7e-114 Score=896.69 Aligned_cols=468 Identities=60% Similarity=1.016 Sum_probs=439.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||++|+++||+|++|||++++++++.+...+. +..+..+.+++++++.++++|+||+|||+++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 5899999999999999999999999999999999999988753321 112557889999998877799999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+++.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhhhhhcccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFSEWNKGELLSFLIEITADIF 242 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 242 (484)
++. +++||++|+|+.|+||++||+||++++++|++++|++.|++ +.| ++++++.++|+.|+.|.+.||+++++..++
T Consensus 161 ~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 161 AKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 874 78899999999999999999999999999999999999998 577 999999999999999999999999999999
Q ss_pred ccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccc
Q 011501 243 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVD 322 (484)
Q Consensus 243 ~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
.++|+.++.+.+|.|.|.++|||||+||+++|.++|||+|+|++||++|++|.+|++|..+++.|.+|....+ ....+
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~--~~~~~ 316 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK--TETED 316 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc--ccccc
Confidence 9876533358999999999999999999999999999999999999999999999999999999987742000 11236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhH
Q 011501 323 KKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEF 402 (484)
Q Consensus 323 ~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~ 402 (484)
++||+|||||||||++|++|+|||+||++|+++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccc
Q 011501 403 AKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476 (484)
Q Consensus 403 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 476 (484)
...+++..++|||+|..|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=1.9e-112 Score=886.21 Aligned_cols=479 Identities=86% Similarity=1.338 Sum_probs=444.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.+++|+++.+++||+||+|||++++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 46899999999999999999999999999999999999988642211100234688999999988889999999999999
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
+++|++++++.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~i 165 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKV 165 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhhhhhccc
Q 011501 163 AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLSNEELQQVFSEWNKGELLSFLIEITADI 241 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 241 (484)
+++. +++||++|+|+.|+||++||+||+++++++++++|++.++++. | +|++++.++|+.|+.+.+.||+++++.++
T Consensus 166 a~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei~~~~ 243 (493)
T PLN02350 166 AAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEITADI 243 (493)
T ss_pred hhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 9875 7889999999999999999999999999999999999999995 7 99999999999999999999999999999
Q ss_pred cccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcc-cccc
Q 011501 242 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVL-AEQT 320 (484)
Q Consensus 242 l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~-~~~~ 320 (484)
+..+++++++|.++.+.||++|||||+|++++|.++|+|+|++.++|++|+.|++|++|..+++.|++|..+... ....
T Consensus 244 l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~~~~~~ 323 (493)
T PLN02350 244 FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDILSADSG 323 (493)
T ss_pred HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccccccccc
Confidence 887666887899999999999999999999999999999999999999999999999999999999876311000 0012
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+...|++.|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++
T Consensus 324 ~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~ 403 (493)
T PLN02350 324 VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDP 403 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccccCCc
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~~ 480 (484)
.|.+.+.+..++|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|++.+.
T Consensus 404 ~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~~~~~ 483 (493)
T PLN02350 404 EFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLAR 483 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred cCC
Q 011501 481 QSK 483 (484)
Q Consensus 481 ~~~ 483 (484)
.++
T Consensus 484 ~~~ 486 (493)
T PLN02350 484 KSK 486 (493)
T ss_pred ccc
Confidence 543
No 5
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=100.00 E-value=3.2e-112 Score=881.00 Aligned_cols=455 Identities=59% Similarity=0.967 Sum_probs=431.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-hhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhh
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSV 92 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~ 92 (484)
||.+||+||+++||+|.+|||++++++++.+. +... +++.+.|+++++++++++|+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 2111 3678999999999888899999999999999999999999
Q ss_pred hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCc
Q 011501 93 YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPC 172 (484)
Q Consensus 93 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~ 172 (484)
.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986689999
Q ss_pred eEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCc
Q 011501 173 VTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDG 251 (484)
Q Consensus 173 ~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 251 (484)
++|+|+.|+||++|||||+|++++|++++|++.++++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999876532556
Q ss_pred hhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccchhhHHHHHH
Q 011501 252 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVR 331 (484)
Q Consensus 252 ~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (484)
+++|.|+|.++|||||+||+++|.++|||+|+|+++|++|+.|.++++|..++++|.+|.. ....+.+||+||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-----~~~~~~~~~i~~v~ 311 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-----KFEGDKAEFIEDVR 311 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-----cccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987643 11235689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhh
Q 011501 332 QALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQS 411 (484)
Q Consensus 332 nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 411 (484)
|||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|...+++..+
T Consensus 312 ~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~ 391 (459)
T PRK09287 312 QALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQD 391 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCcccccccc
Q 011501 412 AWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477 (484)
Q Consensus 412 ~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 477 (484)
+|||+|..|++.|+|+|+|++||+||++++++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 392 ~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 392 ALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
No 6
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=100.00 E-value=5.1e-111 Score=875.92 Aligned_cols=464 Identities=58% Similarity=0.960 Sum_probs=436.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++++|+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 499999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHhc
Q 011501 85 QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAA 164 (484)
Q Consensus 85 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~ 164 (484)
++++++.+++++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 165 QVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 165 ~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
++ +++||++|+|+.|+||++||+||++++++|++++|++.|++ +.| ++++++.++|+.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 85 77899999999999999999999999999999999999996 577 9999999999999999999999999999999
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
.+|+ .+.+++|.|.|.++|||||+||+++|.++|||+|+|+++++.|+.|..|++|..+++.|.+|... ....+.
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~----~~~~~~ 311 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP----EPAVDK 311 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc----cccccH
Confidence 8765 34589999999999999999999999999999999999999999999999999999999776421 122356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
+||+|||||||||++|++|+|||+||++||++|+|++|+++|++|||+||||||+||+.|.++|++++++.||++++.|.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCC--cccccccc
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSG--SFHTEWFK 477 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~--~~h~~w~~ 477 (484)
..+++..++|||+|..|++.|+|+|++|+||+||++++++++|+|||||||||||+|||+|+|++| .||++|++
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999963
No 7
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=100.00 E-value=8.7e-85 Score=626.98 Aligned_cols=291 Identities=63% Similarity=1.027 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhc
Q 011501 182 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 261 (484)
Q Consensus 182 g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~ 261 (484)
|||||||||+|+|++||+++|++.++++..|++++++.++|+.||.|.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976569999999999999999999999999999999876 56779999999999
Q ss_pred CCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 011501 262 GMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICS 341 (484)
Q Consensus 262 ~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~nai~~~~~~~ 341 (484)
+|||||+|++++|.++|||+|+|++||++|++|+.+++|.++++.+++|.... ....+...|+++|++|++++++++
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~---~~~~~~~~~i~~l~~Aly~~~i~~ 156 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD---ESKEDKEEFIEDLRKALYAAKIIS 156 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST---TS-SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc---cccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874210 334578899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhhhHHHHHHHHH
Q 011501 342 YAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421 (484)
Q Consensus 342 ~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~ 421 (484)
|+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.||++++.|.+.+++..++|||+|..|+
T Consensus 157 yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai 236 (291)
T PF00393_consen 157 YAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAI 236 (291)
T ss_dssp HHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccc
Q 011501 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476 (484)
Q Consensus 422 ~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 476 (484)
+.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 237 ~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 237 EAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999995
No 8
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-60 Score=436.47 Aligned_cols=298 Identities=28% Similarity=0.513 Sum_probs=269.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+||+||||.||.+|.++|.+.||+|.+||+|++.++++...+ ++..+|++++++.|..+++|.++||.++.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999988765 467889999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+.+++++.+.|++|++|||.+|+.+.++.++.+.++++|++|+|++.|||..+++.|.++|+|||+++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
. | ..|
T Consensus 154 ~---------------g----------------------------e~G-------------------------------- 158 (300)
T COG1023 154 P---------------G----------------------------EDG-------------------------------- 158 (300)
T ss_pred c---------------C----------------------------cCc--------------------------------
Confidence 2 1 000
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
|. +-+| .++
T Consensus 159 ----yl---------------------------------------------------------~~Gp----------~Gs 167 (300)
T COG1023 159 ----YL---------------------------------------------------------YCGP----------SGS 167 (300)
T ss_pred ----cc---------------------------------------------------------cccC----------CCc
Confidence 00 0012 368
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
|||+|||||+|||++||+|+|||+||+.+ +|++|+++|+++||+|++||||||+.+.++|+++++|+.+- ..+.
T Consensus 168 GHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~ 241 (300)
T COG1023 168 GHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVS 241 (300)
T ss_pred chhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceec
Confidence 99999999999999999999999999975 78999999999999999999999999999999988865432 2232
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCcchhHHHHHhhccCCccceec
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLA-YFDTYRRERLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~-~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
+ .+++ ||+|++|+++|+|+|+|+.||+ .|.|.....+..+++.|+|..||+|..+++
T Consensus 242 d---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 242 D---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 2 5677 9999999999999999999996 888999888999999999999999998775
No 9
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=100.00 E-value=4.1e-54 Score=428.64 Aligned_cols=296 Identities=29% Similarity=0.512 Sum_probs=259.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||.+|+++|++|.+|||++++++.+.+.+ .....+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999998887643 344578888887666799999999998 99
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
.+. +.++|+|+
T Consensus 153 ~~~----~~~~~~G~----------------------------------------------------------------- 163 (298)
T TIGR00872 153 PEE----QGYLYCGP----------------------------------------------------------------- 163 (298)
T ss_pred CcC----CCEEEECC-----------------------------------------------------------------
Confidence 320 00111111
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
.++
T Consensus 164 -----------------------------------------------------------------------------~G~ 166 (298)
T TIGR00872 164 -----------------------------------------------------------------------------CGS 166 (298)
T ss_pred -----------------------------------------------------------------------------ccH
Confidence 134
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
+|++|++||++++++|++|+|||.+++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |.
T Consensus 167 ~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~ 236 (298)
T TIGR00872 167 GHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FS 236 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HH
Confidence 56789999999999999999999999975 999999999999999999999999999999998875433 44
Q ss_pred HHH-HhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCC-CcchhHHHHHhhccCCccceec
Q 011501 404 KEI-IERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRE-RLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~-~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~-~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
..+ +++++ ||+|..|++.|+|+|++++||.|++.++++ ++|+|+|||||||||+|+|+++
T Consensus 237 ~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 237 GRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 443 44455 999999999999999999999988888888 9999999999999999999873
No 10
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=7.7e-47 Score=377.13 Aligned_cols=299 Identities=31% Similarity=0.540 Sum_probs=246.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||++|+++|++|.+|||++++++.+.+.+ +..+.+++++++.+..+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886532 567889999988644579999999998889
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+.+|++|||+||+.|..+.++.+.+.++|+.|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
.+. +..++|+|+.|+|+.+|+
T Consensus 154 ~~~---~~~~~~~G~~G~g~~~Kl-------------------------------------------------------- 174 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHFVKM-------------------------------------------------------- 174 (301)
T ss_pred ccc---cCCeEeECCCcHHHHHHH--------------------------------------------------------
Confidence 621 012577776665544444
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
T Consensus 175 -------------------------------------------------------------------------------- 174 (301)
T PRK09599 175 -------------------------------------------------------------------------------- 174 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
++|+++++.|++|+|+|.++++ ++|++|+.+++++|+.||+++|++++...+++.+++.. +.+.
T Consensus 175 ------~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~ 238 (301)
T PRK09599 175 ------VHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEIS 238 (301)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHH
Confidence 4445555555566666666654 46777777778888888877888888887777655321 1122
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHH-HHhhcCCCcchhHHHHHhhccCCccceec
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAY-FDTYRRERLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~-~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
..++. ..++||++..|.+.|+|+|++++++.| +.++....+|.+++|+||||||+|+|+|+
T Consensus 239 ~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 239 GYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 22222 334499999999999999999999987 99999999999999999999999999996
No 11
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4e-47 Score=367.95 Aligned_cols=256 Identities=26% Similarity=0.392 Sum_probs=237.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+||||||+|.||.+||.||.++||+|++|||++++..+ +.+.+ .....++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999444 44433 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
+++|+ +++.+.+++|.++||+||.+|..++++.+.++++|++|+|+|||||+.++..|. +||+||+++.|++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.+|.+ ++|+|+.|+|+.+|+++|.+..+++++++|++.++++.| +|++.+.+++ +.+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999976 599999999999999999999999999999999999999 9999999998 5778899999999
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.+.+..+ +|.|+|.++.+.||++ ++.++|++.|+|+|+.+.+
T Consensus 220 ~~~m~~~-~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 220 GPRMLEG-DFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred cchhhcC-CCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 8777654 5999999999999997 8999999999999987654
No 12
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=1.9e-44 Score=359.43 Aligned_cols=207 Identities=36% Similarity=0.603 Sum_probs=183.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||.+|+++|++|.+|||++++.+.+.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999988876532 467789999887644469999999999899
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|+.|+|+||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHH
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLSNEELQQV 221 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~ 221 (484)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| |+|++++.++
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 621 35799999999999999999999999999999988888764 2555555444
No 13
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=3.3e-43 Score=333.51 Aligned_cols=257 Identities=23% Similarity=0.352 Sum_probs=239.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||.+|+.||.++||+|++|||+.++.++|.+.+. +.+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 468999999999999999999999999999999999999998764 678999999998 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEE-EecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCI-IDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIED 157 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 157 (484)
+++++ .+++..+++|... ||+||+.|..++++.+.+..++..|+|+|||||..+|+.|. +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99998 4566667788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhh
Q 011501 158 ILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEI 237 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 237 (484)
+|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ +.|...|+.+..
T Consensus 185 ~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~ 253 (327)
T KOG0409|consen 185 VFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYN 253 (327)
T ss_pred HHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhC
Confidence 99999965 599999999999999999999999999999999999999 9999999998 568888999998
Q ss_pred hccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 238 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 238 ~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
..+.+.++ +|.|+|.++++.||++ ++..+|.+.++|+|+.+.|
T Consensus 254 ~~p~m~k~-dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA 296 (327)
T KOG0409|consen 254 PVPGMLKG-DYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA 296 (327)
T ss_pred cCchhhcC-CCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH
Confidence 88877664 5999999999999997 8999999999999988766
No 14
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.1e-40 Score=330.56 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=233.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||++|.++||+|.+|||++. .+.+.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 3799999999999999999999999999999975 45554332 4567889998887 99999999999888
Q ss_pred HHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 98883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 499999999999999999999999999999999999999 9999999988 56778899999888
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+.+.. ++|.++|.++.+.||+. ++++.|++.|+|+|+... +.+.|..+
T Consensus 219 ~~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~-~~~~~~~a 266 (292)
T PRK15059 219 ERMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTAT-CQELFNTC 266 (292)
T ss_pred hhhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHH
Confidence 76654 45889999999999996 999999999999998764 45555443
No 15
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-39 Score=324.16 Aligned_cols=264 Identities=20% Similarity=0.262 Sum_probs=231.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+++|++|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|++.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999998887643 3567788888887 99999999998778
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+.++ +++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. .+|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 356777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++|+|+.|+|+.+|+++|.+...++++++|++.++++.| +|++.+.+++. .+...++.+....
T Consensus 152 ~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~ 220 (296)
T PRK15461 152 MAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTW 220 (296)
T ss_pred HHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHccc
Confidence 999976 499999999999999999999999999999999999999 99999999984 4444455554443
Q ss_pred -cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcC
Q 011501 240 -DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGL 296 (484)
Q Consensus 240 -~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~ 296 (484)
+.+.. ++|+++|.++.+.||++ ++.+.|++.|+|+|+...+ .++|..+.
T Consensus 221 ~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a~ 270 (296)
T PRK15461 221 PNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQAR 270 (296)
T ss_pred cchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 34443 45889999999999996 9999999999999987654 56665543
No 16
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=1.8e-38 Score=315.07 Aligned_cols=260 Identities=21% Similarity=0.284 Sum_probs=230.7
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHH
Q 011501 8 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTI 87 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl 87 (484)
|||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.++++. +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999988887643 4567789998887 999999999987889998
Q ss_pred ---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 011501 88 ---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 88 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++.+.+.+|++|||+||..|..++++.+.+.++|+.|+++||+||+.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccc--
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADI-- 241 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-- 241 (484)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||......+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 599999999999999999999999999999999999999 9999999998 4566778877655432
Q ss_pred -c---ccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 242 -F---GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 242 -l---~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+ ...++|+++|.++.+.||++ ++.+.|++.|+|+|+...+ .+.|..+
T Consensus 220 ~~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 220 VMPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred ccccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 1 11246888999999999996 8999999999999987644 5555544
No 17
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=1.1e-37 Score=359.79 Aligned_cols=263 Identities=17% Similarity=0.250 Sum_probs=240.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
..+|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ ...++++.|++++ +|+||+|+|++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 46899999999999999999999999999999999999988754 4678899999988 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC--CeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG--LLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhh
Q 011501 157 DILLKVAAQVPDSGPCVTY-VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLI 235 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~-~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~ 235 (484)
|+|+.+|.++ +| +|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+++
T Consensus 154 p~l~~~g~~i-------~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQKL-------YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCce-------EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 9999999764 65 599999999999999999999999999999999999 9999999998 5678889999
Q ss_pred hhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 011501 236 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s 294 (484)
+.+.+.+.. ++|.++|.++.+.||++ +++++|+++|+|+|+...+ .++|..
T Consensus 223 ~~~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 223 KNHVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred HhhhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 888776665 46889999999999997 9999999999999987654 555544
No 18
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=8.5e-37 Score=304.40 Aligned_cols=264 Identities=20% Similarity=0.285 Sum_probs=234.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|||||+|.||.++|.+|+++|++|.+|||++++.+.+.+.+ +..++++++++++ +|+||+|+|++.+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999888776532 4567788888877 9999999999888
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++|++|++..+..|. .+++||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++++|+.|+|+.+|+++|.+.++++++++|++.++++.| ++++++.+++ ..+.+.|++++..
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 489999999999999999999999999999999999998 9999998886 5677788888877
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.+..+ +|.++|.++...||++ ++++.|++.|+|+|+...+ .++|..+
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6666443 5788899999999986 8999999999999987754 6666554
No 19
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=2.3e-36 Score=300.51 Aligned_cols=262 Identities=21% Similarity=0.321 Sum_probs=233.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ ...+.++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999988877643 3456788888887 999999999987888
Q ss_pred HHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHH
Q 011501 85 QTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 85 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 160 (484)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 499999999999999999999999999999999999998 9999999998 456668898888776
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.. ++|.++|.++.+.||+. ++.+.|++.|+++|+...+ .+++..+
T Consensus 220 ~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 220 RVID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 6554 45788999999999996 8999999999999987754 5555554
No 20
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.6e-35 Score=340.32 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=236.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~~v 394 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEVQA 394 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChHHH
Confidence 6899999999999999999999999999999999998887654 3457899999987 99999999999899
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIED 157 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 157 (484)
++++ .++.+.+.+|++|||+||+.|..++++.+.+.+ +|+.|+++||+||+.++..|. ++|+||+++++++++|
T Consensus 395 ~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~p 474 (1378)
T PLN02858 395 ENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGS 474 (1378)
T ss_pred HHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHH
Confidence 9998 457788889999999999999999999999998 899999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhh
Q 011501 158 ILLKVAAQVPDSGPCVTY-VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIE 236 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~-~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 236 (484)
+|+.++.++ +| .|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++.+.+++ +.+.+.||.++
T Consensus 475 lL~~lg~~i-------~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~~ 543 (1378)
T PLN02858 475 VLSALSEKL-------YVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMFE 543 (1378)
T ss_pred HHHHHhCcE-------EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhhh
Confidence 999999763 66 467999999999999999999999999999999999 9999999998 45667888888
Q ss_pred hhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcC
Q 011501 237 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGL 296 (484)
Q Consensus 237 ~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~ 296 (484)
...+.+.. ++|+++|.++.+.||++ ++.+.|+++|+|+|+... +.+.|..+.
T Consensus 544 ~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~-~~~~~~~a~ 595 (1378)
T PLN02858 544 NRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTV-AHQLFLAGS 595 (1378)
T ss_pred hccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHHH
Confidence 77766654 45889999999999997 899999999999998764 466665544
No 21
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.97 E-value=1.2e-31 Score=243.79 Aligned_cols=154 Identities=27% Similarity=0.447 Sum_probs=138.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.+.|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 46999999999999999999999999999999999999988764 6789999999998 9999999999999
Q ss_pred HHHHHHH--HhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 83 VDQTIKT--LSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.+.++|++|+|+||+||+..++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccC
Q 011501 160 LKVAAQV 166 (484)
Q Consensus 160 ~~i~~~~ 166 (484)
+.++.++
T Consensus 151 ~~~~~~v 157 (163)
T PF03446_consen 151 EAMGKNV 157 (163)
T ss_dssp HHHEEEE
T ss_pred HHHhCCc
Confidence 9999863
No 22
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.96 E-value=2e-28 Score=254.70 Aligned_cols=250 Identities=19% Similarity=0.192 Sum_probs=202.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh---------------hhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999988776310 0011 25667788887776
Q ss_pred CCcEEEEecCCCch---------HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCe-EEeccCCCCHHh
Q 011501 69 KPRVIIMLVKAGSP---------VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLL-YLGMGVSGGEEG 136 (484)
Q Consensus 69 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~i~~pv~gg~~~ 136 (484)
+|+||+|||++.. +..+++++.+.+++|++||++||..|.+++++.+.+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998753 778888899999999999999999999999987666444 443 566777777777
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011501 137 ARYGP---------SLMPGGSFEAYKHIEDILLKVA-AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 206 (484)
Q Consensus 137 a~~g~---------~i~~gg~~~~~~~v~~ll~~i~-~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l 206 (484)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665 5788999999999999999997 33 4889999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCch--hHHHhhhhcCCCCchHHHHHHHHHcCCCcchH
Q 011501 207 LKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 284 (484)
Q Consensus 207 ~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~ 284 (484)
|++.| +|++++.+++. .+ +.+.. ..|.|+| ....+.||+. +....|+++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 2344443 3445777764 7888999999999988
Q ss_pred HHH
Q 011501 285 ESS 287 (484)
Q Consensus 285 ~~a 287 (484)
.++
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 765
No 23
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.94 E-value=1.5e-25 Score=232.66 Aligned_cols=208 Identities=16% Similarity=0.118 Sum_probs=170.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh------------hcC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH------------SIQ 68 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~------------~l~ 68 (484)
|.+++|+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccc
Confidence 77789999999999999999999999999999999999887542110 00 1112222211 012
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC--------------eE
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL--------------LY 125 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~ 125 (484)
.+|+||+|||++ ..+..+++++.+++++|++||+.||+.|.+++++...+.+++. .+
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v 154 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINI 154 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence 499999999997 5778888999999999999999999999999999887776532 34
Q ss_pred Eecc--CCCCHHhhhcCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 126 LGMG--VSGGEEGARYGP-SLMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 126 i~~p--v~gg~~~a~~g~-~i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
+.+| +.+|...+..+. ..++|| +++++++++++|+.++..+ +++++.++|+++|+++|.+.+..+++++
T Consensus 155 ~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~Ae~~Kl~~N~~~a~~ia~~n 227 (415)
T PRK11064 155 AYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGE-------CVVTNSRTAEMCKLTENSFRDVNIAFAN 227 (415)
T ss_pred EECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCC-------eeeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667 666665555555 567788 9999999999999998653 7899999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011501 202 EAYDVLKSVGKLSNEELQQVF 222 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~ 222 (484)
|+..+|++.| +|++++.+.+
T Consensus 228 E~~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 228 ELSLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHHHhC-CCHHHHHHHh
Confidence 9999999999 9999998886
No 24
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.93 E-value=2.6e-24 Score=223.35 Aligned_cols=248 Identities=12% Similarity=0.157 Sum_probs=183.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh------------cCCCCeeecCCHhHHHhhcCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ------------EGNLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~------------~~~~~~~~~~s~~e~~~~l~~a 70 (484)
+|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++...++. +.++. +
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~---a 77 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE---C 77 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---C
Confidence 5799999999999999999887 699999999999999987 3321 00 12334444 44555 9
Q ss_pred cEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEe--------ccCC
Q 011501 71 RVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLG--------MGVS 131 (484)
Q Consensus 71 dvIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~--------~pv~ 131 (484)
|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+.+.+ .|..+.+ .++.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 9999999988 3344445788899999999999999999999986555433 3555444 4566
Q ss_pred CCHHhhhcCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011501 132 GGEEGARYGP--SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 209 (484)
Q Consensus 132 gg~~~a~~g~--~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~ 209 (484)
+|......+. .++.|++++..+.++++++.+... ..+++++.++|+++|+++|.+.+..+++++|+..+|++
T Consensus 158 ~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~------~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISA------GTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhc------CcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544443 577778888889999999999732 14788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 210 VGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 210 ~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.| +|.+++.++. +. ++.+... ..+- +++.++-. |. ++.+..++++|++++++.++
T Consensus 232 ~G-iD~~~v~~a~---~~----~~~~~~~----~pG~-vGG~Clpk----D~------~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GS----KWNFLPF----RPGL-VGGHCIGV----DP------YYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cC----CCCcccC----CCCc-cccccccc----cH------HHHHHHHHhcCCCcHHHHHH
Confidence 99 9999998885 22 1221111 1111 44444332 22 14556788999998888765
No 25
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.93 E-value=4e-24 Score=219.46 Aligned_cols=200 Identities=16% Similarity=0.182 Sum_probs=161.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-----------hcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------QEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+... ...+.++....++.++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 9999999999999988875110 0000124444556777666 999
Q ss_pred EEEecCCC----------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-
Q 011501 73 IIMLVKAG----------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 73 Ii~~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~- 141 (484)
||+|||++ ..++++++++.. +++|++||+.||++|.+++++.+.+.+.++.| + |+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~-----PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--S-----PEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--C-----cccccCCcc
Confidence 99999987 567788888887 68999999999999999999998887766555 3 34444442
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Q 011501 142 --------SLMPGGSFEAYKHIEDILLK--VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 211 (484)
Q Consensus 142 --------~i~~gg~~~~~~~v~~ll~~--i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g 211 (484)
.+++|++++..+++.++|.. ++..+ .+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67889988888999998854 44332 347899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 011501 212 KLSNEELQQVF 222 (484)
Q Consensus 212 ~~~~~~i~~~~ 222 (484)
+|.+++.+++
T Consensus 223 -iD~~eV~~a~ 232 (388)
T PRK15057 223 -LNTRQIIEGV 232 (388)
T ss_pred -cCHHHHHHHh
Confidence 9999998887
No 26
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.92 E-value=9.6e-25 Score=220.75 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=202.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----C-CC--CeeecCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----G-NL--PLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~~--~~~~~~s~~e~~~~l~~advIi~ 75 (484)
+|+|+|||+|.||.+||.+|+++|++|++|+|++++.+.+.....+. + .. ++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 57999999999999999999999999999999999888877542110 0 00 14466788887766 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHH--HHHHHHHHHH---cCCeEEeccCCCCHHhhhcCC-ccccCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYEN--TERRQKAVAE---LGLLYLGMGVSGGEEGARYGP-SLMPGGS 148 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~i~~pv~gg~~~a~~g~-~i~~gg~ 148 (484)
|||+. ++++++ +.+.++.++|++++. .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99997 566665 445677899999995 5443 5566666655 677777777554444444455 7789999
Q ss_pred HHHHHHHHHHHHHHhccCCC-CCCceEEeCC---------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPD-SGPCVTYVGK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~-~~~~~~~~G~---------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
++.+++++++|+..+.++.- .+-.-.++|. .|.+..+|+.+|......++.++|++.++++.| ++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~~ 234 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEATF 234 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccch
Confidence 99999999999988765300 0000003443 589999999999999999999999999999999 999999
Q ss_pred HHHHHhhcc-Ccchhhhhhhhcc--ccccc---cCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHH
Q 011501 219 QQVFSEWNK-GELLSFLIEITAD--IFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 219 ~~~~~~~~~-g~~~s~l~~~~~~--~l~~~---~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~ 292 (484)
.++.....- ++..|+.++.+.. .+..+ +.+.+.|.+....+|+. ++.+.++++|+++|++.. +++.
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~-~~~~- 306 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA-VARV- 306 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH-HHHH-
Confidence 887521000 2445666655532 33322 12334455555566664 788999999999998764 3444
Q ss_pred HhcCchHHHHHHHhcc
Q 011501 293 LSGLKEERVEAAKVFR 308 (484)
Q Consensus 293 ~s~~~~~r~~~~~~~~ 308 (484)
+-..++..+....++.
T Consensus 307 ~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 307 ARGGWDPLAGLRSLMG 322 (328)
T ss_pred HhCCCCHHHHHHHHhc
Confidence 4444455566665554
No 27
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.91 E-value=5.5e-24 Score=214.85 Aligned_cols=279 Identities=15% Similarity=0.114 Sum_probs=190.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---C----CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---N----LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~----~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... + .++..+.+++++++. +|+||+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEEe
Confidence 68999999999999999999999999999999999888776431100 0 024556778777766 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecC-CCChHHHHHHHHHHHHc-----CCeEEeccCCCCHHhhhcCC-ccccCCCH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGG-NEWYENTERRQKAVAEL-----GLLYLGMGVSGGEEGARYGP-SLMPGGSF 149 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~i~~pv~gg~~~a~~g~-~i~~gg~~ 149 (484)
||+. +++++++++.+.+.++++||+++ +..+....++.+.+.+. ...++.+|..+.+..+..+. .++.|++.
T Consensus 79 v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9985 89999999999988999999998 55554454555555543 34456667655444443444 55677899
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGK 212 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-----------------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~ 212 (484)
+.+++++++|+..+.++ .+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 158 ~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 158 ELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999999999877432 22211 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCc----chhhhhhhhc--cccccccCCC-----CchhHHHhhhhcCCCCchHHHHHHHHHcCCCc
Q 011501 213 LSNEELQQVFSEWNKGE----LLSFLIEITA--DIFGIKDDKG-----DGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 281 (484)
Q Consensus 213 ~~~~~i~~~~~~~~~g~----~~s~l~~~~~--~~l~~~~~~~-----~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~ 281 (484)
++++.+.++.. .+. ..|+..+.+. ..+..+..+. .+ .+....+|++ .+.+.|+++|+|+
T Consensus 230 ~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~ 299 (325)
T PRK00094 230 ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEM 299 (325)
T ss_pred CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCC
Confidence 99999977642 121 1121111111 1111110000 00 1112233432 6788999999999
Q ss_pred chHHHHHHHHHHhcCchHHHHHHHh
Q 011501 282 PTIESSLDARFLSGLKEERVEAAKV 306 (484)
Q Consensus 282 p~~~~av~~r~~s~~~~~r~~~~~~ 306 (484)
|+... +++.+ ...++.++.+..+
T Consensus 300 P~~~~-~~~~~-~~~~~~~~~~~~~ 322 (325)
T PRK00094 300 PITEA-VYAVL-YEGKDPREAVEDL 322 (325)
T ss_pred CHHHH-HHHHH-cCCCCHHHHHHHH
Confidence 98764 45554 4444455544433
No 28
>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....
Probab=99.91 E-value=8.9e-25 Score=211.19 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
||||||||||||||+||+++|+|++|+.+.+..+ .++.+|++.||+| .|+||||+++.++|++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997543222 4667778889998 699999999999999877666899999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
...+|++| +|++++|+++|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999997 77777777654
No 29
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.89 E-value=7.1e-22 Score=197.95 Aligned_cols=251 Identities=11% Similarity=0.062 Sum_probs=182.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
+++|+|||+|.||.+||.+|+++|++|++||++++..+..... ....+.. ++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3689999999999999999999999999999999877654321 0011000 2456778887777
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccc
Q 011501 66 SIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLM 144 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~ 144 (484)
. +|+|+.|+|+..++... +..+.+.. +++++|.+||+. ....++.+.+...+..+.+.|+.+.... ....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts~-~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTSA-LLASAFTEHLAGRERCLVAHPINPPYLI---PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCCC-CCHHHHHHhcCCcccEEEEecCCCcccC---ceEEE
Confidence 6 99999999998655544 45555554 555666655554 4566777777667778888999753211 12345
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHH
Q 011501 145 PG---GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 145 ~g---g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
++ +++++++.++++++.+|++ ++++|+.+.|+ ++ |.+ ..++++|++.++++.| +|++++.++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~---i~-nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF---VL-NRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH---HH-HHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999977 49999888886 33 433 4478899999999988 999999999
Q ss_pred HHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHH
Q 011501 222 FSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSL 288 (484)
Q Consensus 222 ~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av 288 (484)
+ ..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 7 3566666655 3343332 44667788888888764 67778888999999876543
No 30
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.88 E-value=2.4e-22 Score=201.33 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=183.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.|||+|||+|.||.+||.+|+++||+|.+|||++. .++++++++ +|+||+++|+. +
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 47999999999999999999999999999999853 256677766 99999999995 8
Q ss_pred HHHHHHHHhhh-cCCCCEEEecCC-CChHHHHHHHHHHHHcCCeEEeccCC--CCHHhhh----c-CC-ccccCCCHHHH
Q 011501 83 VDQTIKTLSVY-MEKGDCIIDGGN-EWYENTERRQKAVAELGLLYLGMGVS--GGEEGAR----Y-GP-SLMPGGSFEAY 152 (484)
Q Consensus 83 v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~i~~pv~--gg~~~a~----~-g~-~i~~gg~~~~~ 152 (484)
++++++++.++ +.++.+||++++ ..|.......+.+.. .|.+.|+. +|+..+. . +. .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778899999987 555544444444433 24455653 3433221 2 23 67889999999
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~-----------------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
+.++++|+..+.++ ++.++ .|.+...|+.+|......++.+.|++.++++.| +++
T Consensus 137 ~~v~~ll~~~~~~~-------~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~ 208 (308)
T PRK14619 137 ETVQQIFSSERFRV-------YTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQT 208 (308)
T ss_pred HHHHHHhCCCcEEE-------EecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 99999999877553 43333 344555669999999999999999999999999 999
Q ss_pred HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchh------HHHhhhhcCCCCchH----HHHHHHHHcCCCcchHH
Q 011501 216 EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYL------VDKVLDKTGMKGTGK----WTVQQAADLSVAAPTIE 285 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~------l~~i~~~~~~k~tg~----~~~~~A~~~gvp~p~~~ 285 (484)
+.+.++ .|.+++++.. ..... ++|..+|. ++.+.+.+.++.+|. .+.+.++++|+++|++.
T Consensus 209 ~t~~~~-----~g~gd~~~t~---~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 209 ETFYGL-----SGLGDLLATC---TSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccccc-----cchhhhheee---cCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 988763 3555555521 11111 12333333 333344444444443 56678999999999876
Q ss_pred HHHHHHHHhcCchHHHHHHHhccC
Q 011501 286 SSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 286 ~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
. +++.+ ....+.++....++..
T Consensus 280 ~-v~~i~-~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 280 Q-VYRLL-QGEITPQQALEELMER 301 (308)
T ss_pred H-HHHHH-cCCCCHHHHHHHHHcC
Confidence 4 45544 4445666666666653
No 31
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.2e-23 Score=206.09 Aligned_cols=122 Identities=12% Similarity=0.223 Sum_probs=107.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCC-CCCCccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNP-DLANVLV 398 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~-~~~~ll~ 398 (484)
++|+||||||||||||||+||.++|.|++||..-...+ .++++|+.-||+| .+.|||+++..++|+.++ +..+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 46899999999999999999999999999998544333 4455566669999 999999999999999754 4456999
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 399 DPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
|.+++.+.||++| ||+++.|+++|+|+|.|.+|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999997 99999988754
No 32
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.87 E-value=9.7e-23 Score=196.53 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=112.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVD 399 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~ 399 (484)
++|+||||||||||||||+||.++|.|++|+.+.+..+ .+++++++-||+| ++.|+|+++..++|+-+++..+.|++
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 46899999999999999999999999999999776666 7788888889999 99999999999999877666678999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
.+.+.+.+|+++ +|++..|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999997 89999988865
No 33
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.86 E-value=4.6e-20 Score=182.17 Aligned_cols=205 Identities=22% Similarity=0.264 Sum_probs=163.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
++|||||||.+|.++|..++++|++|++||.|+.+++.+..- ....| +++.+++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 689999999999999999999999999999999998776531 11111 4677777777653
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeE-EeccCCCCHHh
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLY-LGMGVSGGEEG 136 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-i~~pv~gg~~~ 136 (484)
||++|+|||++ ..+....+.+.+.|++|++||--||++|.+|+++...+.+. |..| .|-.+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999986 24566778999999999999999999999999999887663 4433 23222233333
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 137 ARYGP---------SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 137 a~~g~---------~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
...|. .++.|-+++..+.+..+++.+-.. ++.+.+.-.++++|+..|.+...++++++|..-+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33332 344444788888999999998764 47777889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011501 208 KSVGKLSNEELQQVF 222 (484)
Q Consensus 208 ~~~g~~~~~~i~~~~ 222 (484)
.+.| +|..++.++-
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999887774
No 34
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=2e-19 Score=178.48 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=194.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|++|...+.+|++.||+|..+|.++++++.+.+. ....| +++++++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 589999999999999999999999999999999998876532 11111 47889999998887
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC----CeEEeccCCCCHH
Q 011501 69 KPRVIIMLVKAGS---------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG----LLYLGMGVSGGEE 135 (484)
Q Consensus 69 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~i~~pv~gg~~ 135 (484)
+|++|+|||++. .++.+++.+.+.++...+||.-||+.+.++.++.+.+.+.. +..+..|-+-.+-
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG 155 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREG 155 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCc
Confidence 999999999874 46788899999998889999999999999999888776543 3445555443333
Q ss_pred hhhcC---C-ccccCCCH-HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 011501 136 GARYG---P-SLMPGGSF-EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 210 (484)
Q Consensus 136 ~a~~g---~-~i~~gg~~-~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~ 210 (484)
.|... | .+++|... .+.+.++++++.+..+ .+.+.+....+++++|+..|++.+.-+++++|.-.+|++.
T Consensus 156 ~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 156 SAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred chhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 3 57888744 4677788888776431 2234455578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHH
Q 011501 211 GKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSL 288 (484)
Q Consensus 211 g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av 288 (484)
| +|.+++.+.+. ++ -+|....+..+-.|++.++.+.++. .+..|+++|.+.+++.+++
T Consensus 231 g-~D~~~V~~gIG------lD---~RIG~~fl~aG~GyGGsCfPKD~~A----------L~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LD---PRIGNHFLNAGFGYGGSCFPKDTKA----------LIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CC---chhhHhhCCCCCCCCCcCCcHhHHH----------HHHHHHhcCCchHHHHHHH
Confidence 9 99999988761 11 1333344555556788787766544 4678999999988887653
No 35
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.84 E-value=1.6e-19 Score=182.02 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=158.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHHhhhcCCCCeeecC
Q 011501 4 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKQEGNLPLYGFH 58 (484)
Q Consensus 4 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~ 58 (484)
|||.|+|.|+. |.+||.+|+++||+|++|||+++.. +.+... ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 58999999975 7889999999999999999998743 333321 366778
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHH----HcCCeEE-eccCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVA----ELGLLYL-GMGVSG 132 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~i-~~pv~g 132 (484)
++.++++. +|+||+|+|.+.++++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+.+. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999886589999999999999999999999998877 45555553 3366554 345556
Q ss_pred CHHhhh----cCC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 133 GEEGAR----YGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 133 g~~~a~----~g~-~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
++.+.. .|+ +...+++++.+++++++|+.++.+ +++++ .|.++.+|+++|.+.+..++.++|++.++
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~ 222 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVG 222 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 122 233345999999999999999976 36666 69999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011501 208 KSVGKLSNEELQQVF 222 (484)
Q Consensus 208 ~~~g~~~~~~i~~~~ 222 (484)
++.| .+++++.+-+
T Consensus 223 ~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 223 TKII-KAPKEMIEKQ 236 (342)
T ss_pred HHhC-CCHHHHHHHH
Confidence 9999 8888776654
No 36
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.84 E-value=7.7e-19 Score=184.05 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=185.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhc---C---------CCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQE---G---------NLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~---~---------~~~~~~~~s~~e~~~~l~ 68 (484)
+|+|+|||+|.+|..+|..|+++| ++|++||+++++++.+.+....- + +-++..+++..+.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 368999999999999999999884 78999999999998875422100 0 0025667777776766
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--C--CeEEeccC
Q 011501 69 KPRVIIMLVKAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--G--LLYLGMGV 130 (484)
Q Consensus 69 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~i~~pv 130 (484)
+|++|+|||++. .++++++.+.++++++++||..||..|.+++++.+.+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 5678889999999999999999999999999988877663 3 44556675
Q ss_pred CCCHHhhhcC---C-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 131 SGGEEGARYG---P-SLMPGGS-----FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 131 ~gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
.-.+-.+... + .+++||. +++.+.++.+++.+... ..+.+.+..+++++|++.|.+.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~------~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPE------ERIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcC------CCEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333222 3 5677873 34678888999888632 135567789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCC-
Q 011501 202 EAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA- 280 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp- 280 (484)
|...+|++.| +|..++.+.+ +... + +....+..+-.+++.++.... ++.+..|+++|++
T Consensus 232 Ela~lce~~g-iD~~eV~~~~---~~d~---r---ig~~~l~PG~G~GG~ClpkD~----------~~L~~~a~~~g~~~ 291 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAV---GKDS---R---IGPKFLNASVGFGGSCFQKDI----------LNLVYICECNGLPE 291 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHh---CCCC---c---CCCCCCCCCCCCCCcchhhhH----------HHHHHHHHHcCCch
Confidence 9999999998 9999988876 2211 1 111222333335555554332 1345678888987
Q ss_pred -cchHHHH
Q 011501 281 -APTIESS 287 (484)
Q Consensus 281 -~p~~~~a 287 (484)
.+++.++
T Consensus 292 ~~~l~~~~ 299 (473)
T PLN02353 292 VAEYWKQV 299 (473)
T ss_pred HHHHHHHH
Confidence 6666544
No 37
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.81 E-value=9.6e-19 Score=185.87 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=149.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh---------------hcCCCCeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------QEGNLPLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~e~~~~l 67 (484)
.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ ++..++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 368999999999999999999999999999999998776532100 000 25677888888877
Q ss_pred CCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-cccc
Q 011501 68 QKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMP 145 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~ 145 (484)
+|+|+.|+|+..++++. +.++.+.++++ +||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 99999999999777764 46777766655 5677777776544 566677677888899987632 2446 6677
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhCCCCHHHHHHH
Q 011501 146 GGS---FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 146 gg~---~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~-~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
+|+ ++.++.++++|+.+|.++ ++++. .+.|.+...++.. ++|++.|+++.| ++++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~~-------v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMKP-------VHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEE-------EeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 775 899999999999999764 77773 5555555555666 599999999988 999999999
Q ss_pred HH
Q 011501 222 FS 223 (484)
Q Consensus 222 ~~ 223 (484)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
No 38
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.81 E-value=3.1e-19 Score=175.07 Aligned_cols=292 Identities=17% Similarity=0.200 Sum_probs=204.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC--------CeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL--------PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~--------~~~~~~s~~e~~~~l~~advIi 74 (484)
+++|+|||.|.||++||..|+++||+|.+|.|+++.++++.....+. .| ++..+++++++++. +|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~-~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENP-KYLPGILLPPNLKATTDLAEALDG---ADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCc-cccCCccCCcccccccCHHHHHhc---CCEEE
Confidence 36899999999999999999999999999999999998887653322 11 46778889999887 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHHHc-C---CeEEeccCCCCHHhhhcCC-cc-ccCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVAEL-G---LLYLGMGVSGGEEGARYGP-SL-MPGG 147 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~~~-g---~~~i~~pv~gg~~~a~~g~-~i-~~gg 147 (484)
++||.. .++++++++.+.+.++.+++.++...-..+.+ +.+.+++. + +.++..|-+. .+-++.-| .+ +.+-
T Consensus 77 ~avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A-~EVa~g~pta~~vas~ 154 (329)
T COG0240 77 IAVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFA-KEVAQGLPTAVVVASN 154 (329)
T ss_pred EECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHH-HHHhcCCCcEEEEecC
Confidence 999996 89999999988999999999999876554444 33444332 3 4445555433 34455555 44 4555
Q ss_pred CHHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 148 SFEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 148 ~~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
|++..++++.+|.. +|.++....|+++-++ .|....+.+..|+-.+.+...++|+..+....| -.++
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA-~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~ 232 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIA-AGIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPE 232 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHH-HHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcc
Confidence 88888889988854 2222112236666665 377777889999999999999999999999999 6777
Q ss_pred HHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHH----HHHHHcCCCcchHHHHHHHHH
Q 011501 217 ELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 217 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~----~~A~~~gvp~p~~~~av~~r~ 292 (484)
++..+- .-|++--...+..++..+.+.-...+..++......+|..+|..+. +.|+++|+.+|+++ +|++-+
T Consensus 233 T~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~-~Vy~vl 308 (329)
T COG0240 233 TFMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITE-AVYRVL 308 (329)
T ss_pred hhcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence 654431 1133333333333333332222233455677777788999997776 45889999999765 566666
Q ss_pred HhcCchHHHHHHHhc
Q 011501 293 LSGLKEERVEAAKVF 307 (484)
Q Consensus 293 ~s~~~~~r~~~~~~~ 307 (484)
..... .+..+..++
T Consensus 309 ~~~~~-~~~~~~~L~ 322 (329)
T COG0240 309 YEGLD-PKEAIEELM 322 (329)
T ss_pred hCCCC-HHHHHHHHh
Confidence 65544 334444443
No 39
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.79 E-value=3.6e-18 Score=169.59 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=144.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
++|+|||+|.||.++|.+|+++|++|++||++++.++.+.+. +...+.. +++.+.++++.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 589999999999999999999999999999999988776532 1100000 24566778777776
Q ss_pred cCCCcEEEEecCCCchHHH-HHHHHhhhcCCCCEE-EecCCCChHHHHHHHHHHH-HcCCeEEeccCCCCHHhhhcCC-c
Q 011501 67 IQKPRVIIMLVKAGSPVDQ-TIKTLSVYMEKGDCI-IDGGNEWYENTERRQKAVA-ELGLLYLGMGVSGGEEGARYGP-S 142 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~-~~g~~~i~~pv~gg~~~a~~g~-~ 142 (484)
+|+||+|+|++.+++. ++.++.+.++++.++ +++||..+....+..+... ..|.+|+ +|+.++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 9999999999876654 457788888888866 7889888765443332211 1478888 788664 4 6
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 143 LMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 143 i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
.|++| +++++++++++++.+++++ +++++ ..| ++.|.+.+ .+++|++.+.+... .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~~-------v~v~d-~~G----f~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKET-------VVVNE-FPG----FVTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67777 9999999999999999764 88875 333 45565554 46699999998765 7899998
Q ss_pred HHH
Q 011501 220 QVF 222 (484)
Q Consensus 220 ~~~ 222 (484)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.79 E-value=3.5e-18 Score=168.96 Aligned_cols=194 Identities=12% Similarity=0.180 Sum_probs=135.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|+.|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVil 71 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFL 71 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEE
Confidence 77789999999999999999999998 78999999864 556665432 24567788888776 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEeccCCCC---HHhhh-cCCccccCCC--
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYLGMGVSGG---EEGAR-YGPSLMPGGS-- 148 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~~pv~gg---~~~a~-~g~~i~~gg~-- 148 (484)
|||+. .+.++++++.+.+.++++||++ ++..+...++.. ..+ +|++++ ...+. .+.+++++++
T Consensus 72 av~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~ 141 (279)
T PRK07679 72 AMKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL----QKD-----VPIIRAMPNTSAAILKSATAISPSKHA 141 (279)
T ss_pred EeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc----CCC-----CeEEEECCCHHHHHhcccEEEeeCCCC
Confidence 99987 7888889998888889999996 666655444422 222 233333 23344 3346776664
Q ss_pred -HHHHHHHHHHHHHHhccCCCCCCceEE--eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011501 149 -FEAYKHIEDILLKVAAQVPDSGPCVTY--VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW 225 (484)
Q Consensus 149 -~~~~~~v~~ll~~i~~~~~~~~~~~~~--~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 225 (484)
++.++.++++|+.+|..+.-.+. .++ .|..|+|.. +.+..+..+.| .+.+.| +++++..+++...
T Consensus 142 ~~~~~~~v~~l~~~~G~~~~v~e~-~~~~~~a~~Gsgpa-------~~~~~~eal~e---~~~~~G-l~~~~a~~~~~~~ 209 (279)
T PRK07679 142 TAEHIQTAKALFETIGLVSVVEEE-DMHAVTALSGSGPA-------YIYYVVEAMEK---AAKKIG-LKEDVAKSLILQT 209 (279)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCHH-HhhhHHHhhcCHHH-------HHHHHHHHHHH---HHHHcC-CCHHHHHHHHHHH
Confidence 67889999999999964200000 014 555566654 22333333333 467888 9999999998543
No 41
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.78 E-value=2.1e-17 Score=162.27 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=138.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++..+.++.++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999988776543 25667888888876 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+ .++++++.++.+.+.++++||+..++..... +.+.+.. . .++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~--l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLAD--LQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHHH--HHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 5899999999888888998887755443222 2222222 1 5664 67666554433222 333456899999999
Q ss_pred HHHHHHhccCCCCCCceEEeC---------CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 157 DILLKVAAQVPDSGPCVTYVG---------KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G---------~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
++|+.+|. + ++++ ..|+|.. +.+.++..+.|+ +.+.| +++++..+++.
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~ 202 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAA 202 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999996 4 6663 3455554 255677777888 67788 99999999874
No 42
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.78 E-value=1.8e-17 Score=168.54 Aligned_cols=265 Identities=18% Similarity=0.149 Sum_probs=163.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC---C-------CeeecCCHhHHHhhcCCCcE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN---L-------PLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~---~-------~~~~~~s~~e~~~~l~~adv 72 (484)
+|+|+|||+|.||..+|..|+++|++|++|||++. .+.+.+.+..... . ++....+. +.+. .+|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCCE
Confidence 46899999999999999999999999999999753 3554443211000 0 01223344 3333 3999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec--c---CCCCHHhhh---cCCccc
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM--G---VSGGEEGAR---YGPSLM 144 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~--p---v~gg~~~a~---~g~~i~ 144 (484)
||+|||.. ++.++++.+.+.+.++++|++++++. ...+.+.+.+.+. .++++ + +.+++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999987 67888999999998999999997764 3444555554332 23333 2 233332222 333 22
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH--------------------HhHHHHHH
Q 011501 145 PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD--------------------MQLIAEAY 204 (484)
Q Consensus 145 ~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~--------------------~~~~~Ea~ 204 (484)
.+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 22 235568899999987765 488899999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhccC--cchhhhhhhhccccccccCCCCchhHHHhhhhcCCC-------CchHHHHHHHH
Q 011501 205 DVLKSVGKLSNEELQQVFSEWNKG--ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMK-------GTGKWTVQQAA 275 (484)
Q Consensus 205 ~l~~~~g~~~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k-------~tg~~~~~~A~ 275 (484)
.++++.| ++++.+.++...+... .+.+++++...+.+...+ +... ..+++|+... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211100 112333332222111111 1111 1122221100 012 6889999
Q ss_pred HcCCCcchHHHHHHHHH
Q 011501 276 DLSVAAPTIESSLDARF 292 (484)
Q Consensus 276 ~~gvp~p~~~~av~~r~ 292 (484)
++|+|+|..... +..+
T Consensus 298 ~~gv~~P~~~~~-~~~~ 313 (341)
T PRK08229 298 RLGAPAPVNARL-CALV 313 (341)
T ss_pred HcCCCCcHHHHH-HHHH
Confidence 999999987654 4443
No 43
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.77 E-value=1.7e-17 Score=176.13 Aligned_cols=188 Identities=13% Similarity=0.154 Sum_probs=144.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|||||+|.||.+||.+|+.+||+|++||++++.++...+.. ...|.+ +++.+.+++++. .
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~-~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA-D 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-C
Confidence 5799999999999999999999999999999999887742211 111100 367778887654 4
Q ss_pred cCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEE-EecCCCChHHHHHHHHHHH--H--cCCeEEe-ccCCCCHHhhhc
Q 011501 67 IQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCI-IDGGNEWYENTERRQKAVA--E--LGLLYLG-MGVSGGEEGARY 139 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~--~--~g~~~i~-~pv~gg~~~a~~ 139 (484)
+|+||.|||++.++++.+ .++...++++.++ .++||.++. ++++.+. + .|+||++ +|++.
T Consensus 87 ---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------- 153 (507)
T PRK08268 87 ---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------- 153 (507)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-------
Confidence 999999999999998776 5676777788888 488888774 3444433 2 3899999 77772
Q ss_pred CCccccC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 140 GPSLMPG---GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 140 g~~i~~g---g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
...+++ +++++++.+.++++.+++.+ +++++ +| ++.|.+.. ..++|++.++++.+ +++
T Consensus 154 -LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p-------v~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 -LVEVVSGLATDPAVADALYALARAWGKTP-------VRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcCCce-------EEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 244555 48999999999999999764 88886 45 46666654 47799999999988 999
Q ss_pred HHHHHHHH
Q 011501 216 EELQQVFS 223 (484)
Q Consensus 216 ~~i~~~~~ 223 (484)
+++.+++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999984
No 44
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.75 E-value=1.8e-17 Score=163.91 Aligned_cols=176 Identities=18% Similarity=0.265 Sum_probs=133.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||.++|..|.++|++|++||++++..+.+.+.+. +....+..+.++. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 48999999999999999999999999999999998887765432 2222233344554 99999999987 67
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCH-HhhhcCC-cccc----------CCCHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGE-EGARYGP-SLMP----------GGSFE 150 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~-~~a~~g~-~i~~----------gg~~~ 150 (484)
.++++++.+.+.++.+|+|+++..+....... +....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 78889999999899999999998765443332 22335887 6999886 4444333 2222 35889
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLI 200 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~ 200 (484)
.++.++++++.+|.+ ++++++.+....++++.+...+...+++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999976 4889999999999999887766554443
No 45
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2e-18 Score=159.24 Aligned_cols=198 Identities=32% Similarity=0.514 Sum_probs=141.4
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcC
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g 140 (484)
+++...|+.-|+||=-=.+ .-++.++.-.....+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 3444455667888766433 455666554445567888999998852211 2345544 34555544332
Q ss_pred C-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 141 P-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 141 ~-~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
. .+ ++.+.+ ..-| ..|+||.|+|||+|||||+|+|++|++++|.+.++++.- .|.+ +.
T Consensus 145 ~~pi--------f~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~~ 203 (300)
T COG1023 145 LEPI--------FKALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-LE 203 (300)
T ss_pred HHHH--------HHhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-HH
Confidence 2 21 111111 0234 379999999999999999999999999999999999876 6532 33
Q ss_pred HHHHhhccC-cchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCch
Q 011501 220 QVFSEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKE 298 (484)
Q Consensus 220 ~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~ 298 (484)
++-+.||.| ...||+++.+...+++. .-++.+.+.+...|+|+||+++|.++|+|+|+++.|++.||.|...+
T Consensus 204 ~VA~vW~hGSVIrSWLldLt~~Af~~d------~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 204 AVAEVWNHGSVIRSWLLDLTAEAFKKD------PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHhhC------CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 344458885 46799999998877642 25788989998999999999999999999999999999999997553
No 46
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.74 E-value=4.9e-17 Score=172.20 Aligned_cols=189 Identities=17% Similarity=0.207 Sum_probs=140.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
.++|||||+|.||.+||.+|+++||+|++||++++.++...+. ....|.. +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 4689999999999999999999999999999999987754221 1111100 356777887653
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEE-ecCCCChHHHHHHHHHHH----HcCCeEEe-ccCCCCHHhhh
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCII-DGGNEWYENTERRQKAVA----ELGLLYLG-MGVSGGEEGAR 138 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~----~~g~~~i~-~pv~gg~~~a~ 138 (484)
. +|+||.|||++.++++.+ .++...++++.+|. ++|+..+ + ++++.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~------ 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA------ 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc------
Confidence 4 999999999998888775 55666665555544 3444443 2 3344442 35899999 67763
Q ss_pred cCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 139 YGPSLMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 139 ~g~~i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
...+++| ++++++.+.++++.+++.+ +++|+ +| ++.|.+. .++++|++.++++.+ .+
T Consensus 152 --LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p-------v~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~ 212 (503)
T TIGR02279 152 --LVEVVSGLATAAEVAEQLYETALAWGKQP-------VHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AA 212 (503)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCee-------eEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CC
Confidence 2457777 8999999999999999764 88886 45 2556555 357899999999988 99
Q ss_pred HHHHHHHHH
Q 011501 215 NEELQQVFS 223 (484)
Q Consensus 215 ~~~i~~~~~ 223 (484)
++++.++++
T Consensus 213 ~~~ID~al~ 221 (503)
T TIGR02279 213 PAVLDAALR 221 (503)
T ss_pred HHHHHHHHH
Confidence 999999985
No 47
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.74 E-value=2e-16 Score=156.03 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=140.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998877654331 12345666654 3 99999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCC----HHhhh----cCC-ccccC---CC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGG----EEGAR----YGP-SLMPG---GS 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg----~~~a~----~g~-~i~~g---g~ 148 (484)
.+.+++.++.+ +.++++|+|++++.......+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67888899999 889999999988765444333222 23568887 99875 44332 455 45543 47
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....+++++.. .+ .+.+.+.++
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 78899999999999977 489999999999999999753 44444455541 24 666655444
No 48
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.72 E-value=3.5e-16 Score=154.90 Aligned_cols=195 Identities=18% Similarity=0.170 Sum_probs=142.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
+.+|||||+|.||.+||.+++.+|++|++||++++.++...+. ....+.. +++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 3589999999999999999999999999999999987763321 1111000 3556777744 45
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhhc-CCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEe-ccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTI-KTLSVYM-EKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLG-MGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~-~pv~gg~~~a~~g 140 (484)
. +|+||.|+|++.+++..+ ..+...+ +++.+++..|++.|..........+++ |.||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 4 999999999999888776 5555555 789999998888877665554444445 788888 466655431
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 141 PSLMPGGSFEAYKHIEDILL-KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 141 ~~i~~gg~~~~~~~v~~ll~-~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
....++++++++.+.+++. .+++.+ +.+++ ..| ++.|.+. ..+++|++.++++.. .+++++.
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----fi~nRi~---~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSG----FVVNALL---VPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCC----hHHHHHH---HHHHHHHHHHHHhCC-CCHHHHH
Confidence 2345679999999999988 588764 66765 334 3445543 455699999998765 7899998
Q ss_pred HHH
Q 011501 220 QVF 222 (484)
Q Consensus 220 ~~~ 222 (484)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
No 49
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.71 E-value=9.3e-17 Score=162.94 Aligned_cols=294 Identities=9% Similarity=0.007 Sum_probs=190.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHHhhhcC---CC----CeeecCCHhHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKQEG---NL----PLYGFHDPESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~~---~~----~~~~~~s~~e~ 63 (484)
.+||+|||.|.||+++|..|+++| ++|.+|.|+++ .++.+.+.+.+.. +. ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999999998 89999999986 3555554433221 00 46677888888
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhh--hcCCCCEEEecCCCChHHH---HHHHHHHHH---cCCeEEeccCCCCHH
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSV--YMEKGDCIIDGGNEWYENT---ERRQKAVAE---LGLLYLGMGVSGGEE 135 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~---~~~~~~l~~---~g~~~i~~pv~gg~~ 135 (484)
++. +|+||++||+. .++++++++.+ .+.++.++|.++.+....+ ..+.+.+.+ ..+.++..|-+. .+
T Consensus 91 v~~---aDiIvlAVPsq-~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A-~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPHQ-FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA-ND 165 (365)
T ss_pred Hhc---CCEEEEEcChH-HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH-HH
Confidence 887 99999999986 89999999998 7877778888766553322 122333322 233444555333 33
Q ss_pred hhhcCC-c-cccCCCHHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHH
Q 011501 136 GARYGP-S-LMPGGSFEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAE 202 (484)
Q Consensus 136 ~a~~g~-~-i~~gg~~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~E 202 (484)
-++.-| . ++++-+.+..+.++.+|.. +|.++....|+++-++. |....+++-.|.-.+.+...+.|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 444445 3 4555688888888888853 22222122255555543 55666678899999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCC---chhHHHhhhhc--CCCCchHHHH----H
Q 011501 203 AYDVLKSVG-KLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGD---GYLVDKVLDKT--GMKGTGKWTV----Q 272 (484)
Q Consensus 203 a~~l~~~~g-~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~---~~~l~~i~~~~--~~k~tg~~~~----~ 272 (484)
+..++++.| |.+++++..+ .|.++-.+.-..++..+.+..+.. +..++.+.+.+ +|+.+|..++ +
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~ 319 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYE 319 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHH
Confidence 999999997 2577777554 232231111111111111111111 13566666665 7888998887 5
Q ss_pred HHHHcCC--CcchHHHHHHHHHHhcCchHHHHHHHhccC
Q 011501 273 QAADLSV--AAPTIESSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 273 ~A~~~gv--p~p~~~~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
.++++++ ++|++. +|++-+... ++....+..++..
T Consensus 320 l~~~~~i~~~~Pi~~-~vy~il~~~-~~~~~~~~~l~~r 356 (365)
T PTZ00345 320 VLESHDLKKEFPLFT-VTYKIAFEG-ADPSSLIDVLSTN 356 (365)
T ss_pred HHHHcCCCCCCCHHH-HHHHHHhCC-CCHHHHHHHHHcC
Confidence 6889999 899876 455555444 4445555655543
No 50
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=4.4e-16 Score=155.01 Aligned_cols=192 Identities=15% Similarity=0.216 Sum_probs=135.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC----------CCeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN----------LPLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~----------~~~~~~~s~~e~ 63 (484)
|+.++|+|||+|.||.+||.+|+++|++|++||++++.++.+.+... ..+. .+++.++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 34578999999999999999999999999999999998776543210 0000 02455667654
Q ss_pred HhhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEE-ecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCHHh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCII-DGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGEEG 136 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~~~ 136 (484)
++. +|+||+|+|++.+++ .++.++.+.++++.+|+ ++|+..+. ++++.+.. .|+||++ +|++++.+
T Consensus 81 ~~~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~ve- 153 (292)
T PRK07530 81 LAD---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVE- 153 (292)
T ss_pred hcC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEE-
Confidence 444 999999999986654 55688888888898887 55555432 45554431 2678887 45443322
Q ss_pred hhcCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 137 ARYGPSLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 137 a~~g~~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
++ .+++++.++.+.++++.+|..+ +++++.+ -+++++.+ ..+++|++.+..+.- .+
T Consensus 154 ------i~~g~~t~~~~~~~~~~~~~~~gk~~-------v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~-~~ 211 (292)
T PRK07530 154 ------LIRGIATDEATFEAAKEFVTKLGKTI-------TVAEDFP----AFIVNRIL----LPMINEAIYTLYEGV-GS 211 (292)
T ss_pred ------EeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCcC----ChHHHHHH----HHHHHHHHHHHHhCC-CC
Confidence 33 4689999999999999999764 7777633 23444433 356789999998754 58
Q ss_pred HHHHHHHH
Q 011501 215 NEELQQVF 222 (484)
Q Consensus 215 ~~~i~~~~ 222 (484)
++++..++
T Consensus 212 ~~~iD~~~ 219 (292)
T PRK07530 212 VEAIDTAM 219 (292)
T ss_pred HHHHHHHH
Confidence 99998886
No 51
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=9.5e-16 Score=153.98 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=135.9
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc-C-----C------CCeeecCCHhHHHhhc
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE-G-----N------LPLYGFHDPESFVHSI 67 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~-~-----~------~~~~~~~s~~e~~~~l 67 (484)
|+ +++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + + -++..+++++++++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 79 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG- 79 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc-
Confidence 54 36899999999999999999999999999999999887766521000 0 0 013456677777766
Q ss_pred CCCcEEEEecCCCch-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCCc
Q 011501 68 QKPRVIIMLVKAGSP-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGPS 142 (484)
Q Consensus 68 ~~advIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~~ 142 (484)
+|+||+|||+..+ ...++.++.+.++++.+|+..+ +... ..++.+.+... |++|.++|..+ ....
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~t-sg~~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~ 149 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNT-SGLP-ITAIAQAVTRPERFVGTHFFTPADVI------PLVE 149 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECC-CCCC-HHHHHhhcCCcccEEEEccCCCCccC------ceEE
Confidence 9999999998754 4567778877776665554333 3333 33555554321 34444333221 1113
Q ss_pred cccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 143 LMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 143 i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++.|. +++.++.++++|+.+|.. ++++++...|. +++|.+ ..+++|++.++++.| ++++++.+
T Consensus 150 i~~g~~t~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~-~~~~~id~ 214 (311)
T PRK06130 150 VVRGDKTSPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRIQ----HALAREAISLLEKGV-ASAEDIDE 214 (311)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCC-CCHHHHHH
Confidence 44443 789999999999999975 47887655554 566653 367899999999988 99999999
Q ss_pred HHH
Q 011501 221 VFS 223 (484)
Q Consensus 221 ~~~ 223 (484)
++.
T Consensus 215 ~~~ 217 (311)
T PRK06130 215 VVK 217 (311)
T ss_pred HHH
Confidence 873
No 52
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.70 E-value=2.6e-16 Score=159.77 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=186.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC----CC----CeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG----NL----PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~----~~----~~~~~~s~~e~~~~l~~advIi 74 (484)
+|||+|||+|.||..+|..|+++| .|.+|.|+++..+.+.+.+.+.. +. ++...+++++.++. +|+||
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlVi 82 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVVV 82 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEEE
Confidence 468999999999999999999999 68999999999888876432110 00 23456677776666 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHHH----cCCeEEeccCCCCHHhhhcCC-ccc-cCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVAE----LGLLYLGMGVSGGEEGARYGP-SLM-PGG 147 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~~----~g~~~i~~pv~gg~~~a~~g~-~i~-~gg 147 (484)
++||.. .++++++++.+.+.++.++|.++++....+.+ +.+.+.+ ..+..+..|-.-. +.+..-+ .++ .+.
T Consensus 83 lavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~-ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR-EVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH-HHHcCCCeEEEEEeC
Confidence 999986 89999999999998888888888776543222 2222222 1222344442211 1122223 333 344
Q ss_pred CHHHHHHHHHHHHHHhccC--C---------CCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 148 SFEAYKHIEDILLKVAAQV--P---------DSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~--~---------~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
+++..+.++.+|+.-+-++ . ...++++.++ .|....+.+..|.....+...+.|+..++++.| .+++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~~~ 238 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GNPE 238 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 6677777888875433221 0 0013333333 344444556667776777899999999999998 8888
Q ss_pred HHHHHHHhhccCcch--hhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHH----HHHHHcCCCcchHHHHHHH
Q 011501 217 ELQQVFSEWNKGELL--SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIESSLDA 290 (484)
Q Consensus 217 ~i~~~~~~~~~g~~~--s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~----~~A~~~gvp~p~~~~av~~ 290 (484)
.+..+ .|.++ -......++..+.+..+..+..++.+.+.++++.+|..++ +.++++++.+|++.+ |+
T Consensus 239 t~~gl-----~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~-~~- 311 (341)
T PRK12439 239 TFAGL-----AGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE-VD- 311 (341)
T ss_pred ccccc-----chhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH-HH-
Confidence 77553 22222 1122211222221112334456777777788888897766 468899999998774 44
Q ss_pred HHHhcCchHHHHHHHhccCC
Q 011501 291 RFLSGLKEERVEAAKVFRSS 310 (484)
Q Consensus 291 r~~s~~~~~r~~~~~~~~~~ 310 (484)
+.+...++.+..++.++..+
T Consensus 312 ~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 312 AVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred HHHhCCCCHHHHHHHHhcCC
Confidence 45555556777777777544
No 53
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.70 E-value=2.4e-17 Score=172.67 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=100.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHcCCCccchhhHHHHHHHHccCCCCC-Cc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE---LTRIWKGGCIIRAIFLDRIKKAYDRNPDLA-NV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~---i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~-~l 396 (484)
.++|||+||+||+|+|++||+++|+|.|+++.. + +|..+ +++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998522 3 66544 56669998 589999999999998765432 58
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
++|.+.+...+|++| ||+|++|+++|+|+|+|++||+ ++++++..|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 889999999999999 9999999999999999999997 77777776654
No 54
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.69 E-value=2.2e-16 Score=159.17 Aligned_cols=278 Identities=10% Similarity=0.026 Sum_probs=180.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHHhhhcC---CC----CeeecCCHhHHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKQEG---NL----PLYGFHDPESFV 64 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~ 64 (484)
||+|||.|.||++||..|+++| ++|.+|.| +++..+.+.....+.. ++ +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5454555444322210 11 356778888888
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH--HH-HHHHHHHH---cCCeEEeccCCCCHHhhh
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN--TE-RRQKAVAE---LGLLYLGMGVSGGEEGAR 138 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~-~~~~~l~~---~g~~~i~~pv~gg~~~a~ 138 (484)
+. +|+||++||+. .++++++++.++++++.++|.++.+.... +. .+.+.+++ ..+.++..|-+.. +-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~-Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLAN-EVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHH-HHHc
Confidence 87 99999999986 89999999999998888999987765443 32 22333322 2333444554432 3344
Q ss_pred cCC-cc-ccCCC----HHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 139 YGP-SL-MPGGS----FEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 139 ~g~-~i-~~gg~----~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
.-| .+ +.+.+ .+..+.++.+|.. +|.++....|+++-++. |....+.+-.|.-.+.+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 445 44 44556 7888888888853 12111122255555543 5556667788999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhhhhhccccccccCCCC-chhHHHhhhh--cCCCCchHHHHH----
Q 011501 202 EAYDVLKSVGKLSNE--ELQQVFSEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQ---- 272 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~-~~~l~~i~~~--~~~k~tg~~~~~---- 272 (484)
|+..+++..| -+++ .+... .|.++-.+.-..++..+.+..+.. +..++.+.+. .+++.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 5655 55432 222221111111111111111233 4566777777 778899987775
Q ss_pred HHHHcCCC--cchHHHHHHHHHHhc
Q 011501 273 QAADLSVA--APTIESSLDARFLSG 295 (484)
Q Consensus 273 ~A~~~gvp--~p~~~~av~~r~~s~ 295 (484)
.++++++. +|++.+ |++-+...
T Consensus 309 l~~~~~i~~~~Pi~~~-vy~il~~~ 332 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEA-VYQILYEG 332 (342)
T ss_pred HHHHcCCCcCCCHHHH-HHHHHhCC
Confidence 47889999 998764 55555444
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.68 E-value=3.2e-15 Score=156.31 Aligned_cols=194 Identities=18% Similarity=0.206 Sum_probs=144.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|+||| +|.||.++|..|.++|++|.+|||++++..++.... ++....++++.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 4899997 899999999999999999999999988765554432 24556677777776 99999999986 7
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC-ccccC---CCHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP-SLMPG---GSFEAYKHIED 157 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~-~i~~g---g~~~~~~~v~~ 157 (484)
+.++++++.+.++++.+|+|++++.......+.+.+ ..+..|+++ |++|.......|. .++.. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 789999999999999999999998876666655543 357889987 8887655556676 44443 36788999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 158 ILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
+|+.+|.++ +++++.. --+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~v-------~~~~~e~---HD~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGARV-------IVTSPEE---HDRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCEE-------EECCHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999763 6776643 23444444444445555555544 5567 88776543
No 56
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.68 E-value=2.1e-15 Score=150.68 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=137.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcC------CCCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEG------NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~------~~~~~~~~s~~e~~~~l~~ 69 (484)
..+|||||+|.||.+||.+++.+|++|.+||++++..+.+.+... +.+ ..+++.++++++.++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 468999999999999999999999999999999987665433110 000 0035667788887776
Q ss_pred CcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCCccc
Q 011501 70 PRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGPSLM 144 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~~i~ 144 (484)
||+|+.++|...+++..+ .++...++++. ||.+||+.. ...++.+.+... |.||+..|-.-.-. =++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888655 77888887766 667776643 444555555322 45555443211100 144
Q ss_pred cC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHH
Q 011501 145 PG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVF 222 (484)
Q Consensus 145 ~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 222 (484)
.| .++++++.+..+++.+|+++ +.+...-.| ++.|.+.. ++++|++.+..+.. .+++++..++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pG----Fi~NRl~~---a~~~EA~~lv~eGv-as~edID~a~ 220 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPG----FIADRLLE---ALWREALHLVNEGV-ATTGEIDDAI 220 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCcc----HHHHHHHH---HHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 44 37999999999999999764 666444444 45566654 45599999999877 8999999987
Q ss_pred H
Q 011501 223 S 223 (484)
Q Consensus 223 ~ 223 (484)
.
T Consensus 221 ~ 221 (321)
T PRK07066 221 R 221 (321)
T ss_pred H
Confidence 3
No 57
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.68 E-value=2.1e-15 Score=150.11 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=138.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh----------hcCCC----------CeeecCCH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------QEGNL----------PLYGFHDP 60 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~----------~~~~~----------~~~~~~s~ 60 (484)
|...+|+|||+|.||.++|..|+.+|++|++||++++.++...+... ..+.. ++...++.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 55578999999999999999999999999999999998765432110 00000 12344444
Q ss_pred hHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCH
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGE 134 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~ 134 (484)
+.++. +|+||+|+|++..+ ..++.++.+.++++.+|+..+++. ...++++.+.. .|.||+. +|++++.
T Consensus 81 -~~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~v 154 (291)
T PRK06035 81 -ESLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLI 154 (291)
T ss_pred -HHhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccE
Confidence 34444 99999999998654 456678888888888877555543 34455555533 2778887 5666664
Q ss_pred HhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 135 EGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 135 ~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
+ ...|+. .++++++.+.++++.++..+ +++++.+.....|+++| +++|++.+.+..- .+
T Consensus 155 E-v~~g~~----T~~e~~~~~~~~~~~lgk~~-------v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~ 213 (291)
T PRK06035 155 E-VVRAAL----TSEETFNTTVELSKKIGKIP-------IEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-AT 213 (291)
T ss_pred E-EeCCCC----CCHHHHHHHHHHHHHcCCeE-------EEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CC
Confidence 4 234431 28999999999999999764 88887666666677665 4579999988754 68
Q ss_pred HHHHHHHH
Q 011501 215 NEELQQVF 222 (484)
Q Consensus 215 ~~~i~~~~ 222 (484)
++++..++
T Consensus 214 ~~~iD~~~ 221 (291)
T PRK06035 214 IKDIDEMC 221 (291)
T ss_pred HHHHHHHH
Confidence 99998886
No 58
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.68 E-value=1.6e-15 Score=151.16 Aligned_cols=194 Identities=13% Similarity=0.183 Sum_probs=134.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCC---------C-CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGN---------L-PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~---------~-~~~~~~s~~e~~~ 65 (484)
+++|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+. + .+...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 4689999999999999999999999999999999887543211 000000 0 13344444 4455
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEE-ecCCCChHHHHHHHHH-HHHcCCeEEeccCCCCHHhhhcCCc
Q 011501 66 SIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCII-DGGNEWYENTERRQKA-VAELGLLYLGMGVSGGEEGARYGPS 142 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~-l~~~g~~~i~~pv~gg~~~a~~g~~ 142 (484)
. +|+||+|||++.+++.. +.++.+.++++.+|+ ++|+..+....+.... ..-.|+||+++|..+.. .-
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ve 153 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------VE 153 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------EE
Confidence 5 99999999988777755 477888888888886 6777765543332221 11237788888865321 12
Q ss_pred ccc--CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 143 LMP--GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 143 i~~--gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++. +++++.++.++++|+.+|.. ++++++ ..| .+.|.+.. .+++|++.++++.. .+++++..
T Consensus 154 iv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g----~i~nri~~---~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 154 IIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPG----FIVNRILM---PMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 332 35899999999999999965 367775 223 34555543 45799999999876 88999887
Q ss_pred HH
Q 011501 221 VF 222 (484)
Q Consensus 221 ~~ 222 (484)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 75
No 59
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.67 E-value=1.6e-15 Score=155.68 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=141.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+++|+||| +|.||.++|..|.++|++|.+||+++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 36899998 999999999999999999999998631 134455665 99999999998
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcCC-ccccCC-CHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYGP-SLMPGG-SFEAYKHIEDI 158 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g~-~i~~gg-~~~~~~~v~~l 158 (484)
....+++++.+ +++|.+|+|+|++++.....+.+.+. ..|+ ..|++|++.....+. .++.++ ++++++.+.++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 57788888888 89999999999998666655554322 2588 569999877666666 555555 67889999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++.+|++ ++++++.+....++++. .+ .++..++++..+++ .+ .+.+.+.+
T Consensus 230 ~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 9999987 49999999999999998 33 56667788888766 56 78776544
No 60
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.67 E-value=9.2e-17 Score=168.34 Aligned_cols=118 Identities=13% Similarity=0.253 Sum_probs=98.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
.|+|||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|++++...++|++++.....+
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g--~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~ 245 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---G--LSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPL 245 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCcc
Confidence 489999999999999999999999999997532 3 544 5556668997 789999999999998854444688
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
+|.+.+...+++++ ||+|++|+++|+|+|+|++++. +.+..+..|..
T Consensus 246 l~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 246 VDKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred HHhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 89999999999999 9999999999999999999997 44445555543
No 61
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.66 E-value=1.3e-16 Score=166.49 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=98.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHcCCCccchhhHHHHHHHHccCCC-CCCc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE---LTRIWKGGCIIRAIFLDRIKKAYDRNPD-LANV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~---i~~iW~~Gcii~s~ll~~i~~~~~~~~~-~~~l 396 (484)
.|+|||+||+||+|+|++||+++|+|.++++.. + +|..+ +++.|+.| .++|+++++..+++.+++. ..+.
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999998521 3 65544 56669999 5899999999999987442 3458
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
++|.+.+...+|++| ||++++|+++|+|+|+|++|++ +.+.++..|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 899999999999999 9999999999999999999997 55555655544
No 62
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=2.1e-14 Score=142.64 Aligned_cols=198 Identities=14% Similarity=0.216 Sum_probs=136.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC-----------CCeeecCCHhH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN-----------LPLYGFHDPES 62 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~-----------~~~~~~~s~~e 62 (484)
|.+++|+|||+|.||.++|..|+++|++|++||++++.++.+.+... ..+. .+++.++++++
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 55679999999999999999999999999999999987766543210 0000 03556778888
Q ss_pred HHhhcCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC
Q 011501 63 FVHSIQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP 141 (484)
Q Consensus 63 ~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~ 141 (484)
+++. +|+||.|+|+..++ ..+++++.+.++++.+|++.+++.+.. ++.+.+. +.-+|++...+..+ ...+
T Consensus 81 a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~-~~~r~vg~Hf~~p~---~~~~ 151 (287)
T PRK08293 81 AVKD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATG-RPEKFLALHFANEI---WKNN 151 (287)
T ss_pred HhcC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcC-CcccEEEEcCCCCC---CcCC
Confidence 7776 99999999987544 466688888888888885544443222 2333332 23345554322221 1223
Q ss_pred --ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 142 --SLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 142 --~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
-++ .+.++++++.+..+++.+++.+ +.+.+...|.. .|.+. ..+++|++.+..... .++++
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgfi----~nRi~---~~~~~ea~~l~~~g~-a~~~~ 216 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGYI----LNSLL---VPFLSAALALWAKGV-ADPET 216 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCHh----HHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 234 3468999999999999999763 66765455544 44443 345699999998866 78999
Q ss_pred HHHHH
Q 011501 218 LQQVF 222 (484)
Q Consensus 218 i~~~~ 222 (484)
+..++
T Consensus 217 iD~a~ 221 (287)
T PRK08293 217 IDKTW 221 (287)
T ss_pred HHHHH
Confidence 98876
No 63
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.63 E-value=1.5e-14 Score=143.25 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-------HhhhcCCC----------CeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-------RAKQEGNL----------PLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-------~~~~~~~~----------~~~~~~s~~e~ 63 (484)
|++++|+|||+|.||.++|..|+++|++|++||+++++++...+ .....+.. +++.+++.++
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 66678999999999999999999999999999999998753221 11010000 2445666654
Q ss_pred HhhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCHHhh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGEEGA 137 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~~~a 137 (484)
++. +|+||+|+|+...++ +++.++.+.++++++|+..+++. ..+ .+.+.+.. .|.||.. +++..+.+
T Consensus 80 ~~~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-- 152 (282)
T PRK05808 80 LKD---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-- 152 (282)
T ss_pred hcc---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHH-HHHHhhCCCcceEEeeccCCcccCccEE--
Confidence 444 999999999876655 77788999888888774433332 233 55555532 2445554 23333322
Q ss_pred hcCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 138 RYGPSLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 138 ~~g~~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
++ .+.+++.++.+.++++.+|.. ++++++ ..| .+.|.+.+ .+++|++.+.++.- .++
T Consensus 153 -----v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g----~i~~Ri~~---~~~~ea~~~~~~gv-~~~ 211 (282)
T PRK05808 153 -----IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APG----FVVNRILI---PMINEAIFVLAEGV-ATA 211 (282)
T ss_pred -----EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccC----hHHHHHHH---HHHHHHHHHHHhCC-CCH
Confidence 33 346899999999999999965 477764 444 44555443 55699999998866 789
Q ss_pred HHHHHHH
Q 011501 216 EELQQVF 222 (484)
Q Consensus 216 ~~i~~~~ 222 (484)
+++..++
T Consensus 212 ~diD~~~ 218 (282)
T PRK05808 212 EDIDEGM 218 (282)
T ss_pred HHHHHHH
Confidence 9998886
No 64
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.62 E-value=4.1e-14 Score=141.60 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=159.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----CC--CCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----GN--LPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~~--~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+..- +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777766532110 00 001123445554444 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC----C
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG----S 148 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg----~ 148 (484)
|.. +++++++.+.+.+.++++||...|.. .....+.+.+.+. |+.+++++..++..-...++ .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 987 78999999999888888888887764 2333444444332 34455555443221112233 444443 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH---------------------HHHHhHHHHHHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 207 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~---------------------~~~~~~~~Ea~~l~ 207 (484)
.+..+.+..+|...+-. +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34555566666655432 233444666778888877543 23456789999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHH
Q 011501 208 KSVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 285 (484)
Q Consensus 208 ~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~ 285 (484)
++.| ++ .+.+.+.+....... .....++..++...+. ..+|.+.. ..++.|+++|+|+|...
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 76 334444433221111 1222334445544321 35677655 46899999999999876
Q ss_pred H
Q 011501 286 S 286 (484)
Q Consensus 286 ~ 286 (484)
.
T Consensus 292 ~ 292 (305)
T PRK12921 292 T 292 (305)
T ss_pred H
Confidence 4
No 65
>PRK07680 late competence protein ComER; Validated
Probab=99.62 E-value=1.2e-13 Score=136.13 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=132.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++....+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999988877765321 25567788888776 9999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccC--CCHHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPG--GSFEAYKHIE 156 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~g--g~~~~~~~v~ 156 (484)
. .+.++++++.+++.++++||++++.. ....+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 5 78999999999998899999999865 3444544444333344432 334455777 44555 4677889999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011501 157 DILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIH--NGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW 225 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~--N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 225 (484)
++|+.+|.. +++.+.-.-...-+.+ -++.+..+..+.++. .++.| +++++..+++...
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~~ 205 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASEM 205 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHHH
Confidence 999999942 4554320000000111 112233333333332 24467 9999988887543
No 66
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.61 E-value=4.3e-14 Score=142.92 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=151.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----C-C--CCeeecCCHhHHH-hhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----G-N--LPLYGFHDPESFV-HSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~--~~~~~~~s~~e~~-~~l~~advIi~ 75 (484)
|||+|||+|.||..+|..|+++|++|.+|+|+++.++.+.+.+.+. + . .++....++++.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4899999999999999999999999999999998888776542110 0 0 0234556666655 34 899999
Q ss_pred ecCCCchHHHHHHHHhh-hcCCCCEEEecCCCChHH-----HHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccc-cCC
Q 011501 76 LVKAGSPVDQTIKTLSV-YMEKGDCIIDGGNEWYEN-----TERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLM-PGG 147 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~-~gg 147 (484)
+||+. +++++++++.+ .+.++..|+..+++.... .+.+.+.+....+..+..|-.. .+.+...+ .+. .|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99987 89999999998 887777666666665221 1222222222222233333211 12333344 333 444
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHH-----------------HHHHHHHhHHHHHHHHHHH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVG-KGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKS 209 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G-~~g~g~~~K~v~N-----------------~i~~~~~~~~~Ea~~l~~~ 209 (484)
+.+..+.+..+|+.-+-+ ++.. +.-.-.+.|++-| .......+++.|+..++++
T Consensus 156 ~~~~~~~l~~~l~~~~~~--------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a 227 (326)
T PRK14620 156 NETLGSSLISKLSNENLK--------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSA 227 (326)
T ss_pred CHHHHHHHHHHHCCCCeE--------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 555444454544332211 2222 2233334444433 4444467788999999999
Q ss_pred hCCC--CHHHHHHHHHhhccCcchhhh--hhhhccccccccCCCCchhHHHhhhhcCCCCchH----HHHHHHHHcCCCc
Q 011501 210 VGKL--SNEELQQVFSEWNKGELLSFL--IEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGK----WTVQQAADLSVAA 281 (484)
Q Consensus 210 ~g~~--~~~~i~~~~~~~~~g~~~s~l--~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~----~~~~~A~~~gvp~ 281 (484)
.| . +++++...- |.++-.+ ...+++..+.+..+..+..++.+.+...+.-+|. ...+.++++|+++
T Consensus 228 ~G-~~~~~~~~~gl~-----g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~ 301 (326)
T PRK14620 228 KN-GSIDLNTLIGPS-----CLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIEL 301 (326)
T ss_pred hC-CCCCcchhhccc-----hhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCC
Confidence 98 5 777774321 1111000 0000111000000112233444443333323342 4668899999999
Q ss_pred chHHHHHHHHHHh
Q 011501 282 PTIESSLDARFLS 294 (484)
Q Consensus 282 p~~~~av~~r~~s 294 (484)
|++.. +++.+..
T Consensus 302 P~~~~-l~~~~~~ 313 (326)
T PRK14620 302 PICES-IYNLLYE 313 (326)
T ss_pred CHHHH-HHHHHhC
Confidence 98764 4554433
No 67
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.61 E-value=3.7e-14 Score=138.68 Aligned_cols=192 Identities=11% Similarity=0.135 Sum_probs=131.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+|||||+|.||.+|++.|.+.|+. +.+|||++++.+++.+... ++..+.++.+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4899999999999999999999864 5799999999888776431 14567788888877 9999999995
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
+.+.++++++ . +.++++||++.... ....+.+.+......+..+|..... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56788999877554 4445555554334556777874322 234555555553 57899999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
.+|.. ++++++..-...-.+. +..+..+.++.++..++.+.| +++++..+++..
T Consensus 142 ~lG~~--------~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~ 195 (258)
T PRK06476 142 ALGTA--------VECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQG-LKRQKARAYLAP 195 (258)
T ss_pred hcCCc--------EEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 99964 3344321000000000 122223357788889999998 999999888743
No 68
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.61 E-value=2.4e-14 Score=143.52 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=122.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.++++.++. +|+||+|+|..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECCCHH
Confidence 4689999999999999999999995 89999999988777654331 12344567776665 99999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHH-hhh-------cCC-cc---ccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEE-GAR-------YGP-SL---MPGG 147 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~-~a~-------~g~-~i---~~gg 147 (484)
...+++.++.+.++++.+|+|.++........+.+.+ ..+++|+++ |+.|++. ++. .|. .+ +.++
T Consensus 78 -~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 -ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred -HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 6788888888889999999999988765554444433 347789997 8887652 222 222 22 2357
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g 182 (484)
+++.++.++++++.+|.+ ++++++..-.
T Consensus 156 ~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD 183 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-------VEEMDPEHHD 183 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-------EEEcCHHHHh
Confidence 889999999999999976 3777764433
No 69
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.60 E-value=1e-13 Score=135.14 Aligned_cols=149 Identities=9% Similarity=0.102 Sum_probs=113.3
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHHhhhcCCCCeeecC
Q 011501 4 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKQEGNLPLYGFH 58 (484)
Q Consensus 4 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~~~~~~~~~~~~~~~~~~ 58 (484)
|||.|+|.|+. |.+||.+|+++||+|++|||++++.+ .+.+.+ +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 58999999975 78999999999999999999987653 344332 56788
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHH---HHHcCCeEEe---ccCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKA---VAELGLLYLG---MGVSG 132 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~---l~~~g~~~i~---~pv~g 132 (484)
++.++++. +|+||+|+|++.+++++++++++.+.+|++|||+||++|....+..+. +.++.+...+ +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999998887665 3334443333 23333
Q ss_pred CHHhhhcCCccccC--------CCHHHHHHHHHHHHHHhcc
Q 011501 133 GEEGARYGPSLMPG--------GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 133 g~~~a~~g~~i~~g--------g~~~~~~~v~~ll~~i~~~ 165 (484)
.+. ++..++.| .+++.++++.++.++.++.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKK 188 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCC
Confidence 221 21122222 2678888888888888865
No 70
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.60 E-value=2.7e-13 Score=133.16 Aligned_cols=198 Identities=17% Similarity=0.181 Sum_probs=131.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+.. ++....+.++++.. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 468999999999999999999999 78999999998887776542 24556778887766 9999999988
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC-ccccCC--CHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP-SLMPGG--SFEAYKHI 155 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~-~i~~gg--~~~~~~~v 155 (484)
. .+.++++.+.+.+ +++||.++++.+.. .+.+.+. .+.+++.+ | ..+.....+. .+.++. +++.++.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHH
Confidence 6 7999999998877 56888877766433 3333332 34445443 3 2223333444 455554 88999999
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHH-HHHHHHHHHHHhHHHHHH-HHHHHhCCCCHHHHHHHHHhhccC
Q 011501 156 EDILLKVAAQVPDSGPCVTYVGKGGSGNFVK-MIHNGIEYGDMQLIAEAY-DVLKSVGKLSNEELQQVFSEWNKG 228 (484)
Q Consensus 156 ~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K-~v~N~i~~~~~~~~~Ea~-~l~~~~g~~~~~~i~~~~~~~~~g 228 (484)
+.+|+.+|.. +++.++..-+.+- +..++- +.+..+.|++ ..+.+.| +++++..+++..+-.|
T Consensus 145 ~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g 208 (267)
T PRK11880 145 ENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLG 208 (267)
T ss_pred HHHHHhCCeE--------EEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 9999999953 5665322222222 111211 1122223333 3345677 9999988887544333
No 71
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.58 E-value=1.4e-13 Score=137.51 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=147.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh--cCCC--CeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ--EGNL--PLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~--~~~~--~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|+|||+|.||..+|..|+++|++|++++|+++..+.+.+.+.. .+.. .+....+++++ + .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 489999999999999999999999999999998888777654321 0000 01223444443 3 49999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC---CHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG---SFEA 151 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg---~~~~ 151 (484)
. +++++++.+.+.+.++++||...|.. ...+.+.+.+... |+.++++-..++......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 7 78999999999988888888888764 2233334433322 11222221211111111222 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHh
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 210 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~~~Ea~~l~~~~ 210 (484)
.+.+.++|+..+-+. ...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~~-------~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLDV-------EWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCCC-------CCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 555666666554321 222223444455555442 2334556789999999998
Q ss_pred CCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 211 GKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 211 g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
| ++ .+.+.+.+......... ...++..++...+. -.+|.+.. +.++.|+++|+|+|....
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 65 34444433322111111 12233344433221 24455443 578999999999998654
No 72
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.57 E-value=3.7e-14 Score=131.24 Aligned_cols=149 Identities=20% Similarity=0.222 Sum_probs=98.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+. ....+ ++.++++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 699999999999999999999999999999999988776531 11111 57888899988887
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHH-HHcC-----CeEEeccCCCC
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAV-AELG-----LLYLGMGVSGG 133 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~g-----~~~i~~pv~gg 133 (484)
+|++|+|||++ ..++++++.+.+.++++++||..||..|.+++++.+.+ ++.+ +++.-+|-.-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999876 34778889999999999999999999999999665544 4333 45566673322
Q ss_pred H---HhhhcCC-ccccCCCHHHHH-HHHH
Q 011501 134 E---EGARYGP-SLMPGGSFEAYK-HIED 157 (484)
Q Consensus 134 ~---~~a~~g~-~i~~gg~~~~~~-~v~~ 157 (484)
+ ..-...+ .++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2 1122233 566666544333 4444
No 73
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.55 E-value=2.1e-13 Score=139.55 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=122.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|||+|.||.+||..|.++|++|.+|+++++..+.....+.. ..-...++++++++. +|+||+|||.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFG---VIDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCC---CCcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 379999999999999999999999999999988765443322110 001123566677666 99999999996 78
Q ss_pred HHHHHHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHH-h-------hhcCC-ccccC---CCH
Q 011501 84 DQTIKTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEE-G-------ARYGP-SLMPG---GSF 149 (484)
Q Consensus 84 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~-~-------a~~g~-~i~~g---g~~ 149 (484)
.++++++.+ .++++.+|+|.++++........+. ...+..|++ .|+.|++. + ...|. .++.. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999986655554433 345678998 58888742 2 12344 33332 578
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHH
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIH 189 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~ 189 (484)
+.++.++++++.+|+. ++++.+..-...+-++.
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVS 185 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhc
Confidence 9999999999999976 36777655444444443
No 74
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.53 E-value=1.7e-12 Score=127.63 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=129.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+ ++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+|
T Consensus 1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLa 70 (272)
T PRK12491 1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILS 70 (272)
T ss_pred CC-CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEE
Confidence 44 489999999999999999999885 6999999999988776532 24567788888877 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCC--CHHHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGG--SFEAYK 153 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~ 153 (484)
||+ +++.++++++.+.++++.+||+.-... +...+.+.+....-..--+|-. +.....|. .+..+. +++..+
T Consensus 71 vkP-~~~~~vl~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~ 145 (272)
T PRK12491 71 IKP-DLYSSVINQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIK 145 (272)
T ss_pred eCh-HHHHHHHHHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHH
Confidence 997 589999999999888888999977765 3334444443211122334533 23344566 344433 566778
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 154 HIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 154 ~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
.++.+|+.+|.- +.+.+. -....+-=.--++.+..+..+.++ +.+.| ++.++..++..+
T Consensus 146 ~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 146 EVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 899999999952 333321 001110001112223333333333 34566 999998887643
No 75
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.52 E-value=9.7e-13 Score=132.29 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=151.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cCCC---CeeecCCHhHHHhhcCCCcEEE
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ----EGNL---PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~~~---~~~~~~s~~e~~~~l~~advIi 74 (484)
+.|+|+|||+|.||..+|..|+++|++|+++.|++. +.+...+.. .+.. .+...+++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 467999999999999999999999999999999863 334332211 0000 0112223322 2 3489999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-cccc---C
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMP---G 146 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~---g 146 (484)
+|||.. ++.++++.+.+.+.++.+|+...|.. ...+.+.+.+.+. |+.++++...+...-...+. .+.+ .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999987 67888899999888888888888875 3334444444332 33444443332211111222 2222 2
Q ss_pred C-C-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhH
Q 011501 147 G-S-----FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQL 199 (484)
Q Consensus 147 g-~-----~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~ 199 (484)
| + .+..+.+..+|+..+-. +....+.-..-+.|++.|. .......+
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~ 228 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGID-------SQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL 228 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCC-------ceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence 2 2 35556666777765533 2333444555555665442 23445667
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHc
Q 011501 200 IAEAYDVLKSVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADL 277 (484)
Q Consensus 200 ~~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~ 277 (484)
+.|++.++++.| ++ .+.+..+++. ..... ....++..++...+ ...+|.+.. +.++.|+++
T Consensus 229 ~~E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~-~~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~ 291 (313)
T PRK06249 229 MAEVIQGAAACG-HTLPEGYADHMLAV-TERMP-DYRPSMYHDFEEGR-----PLELEAIYA---------NPLAAARAA 291 (313)
T ss_pred HHHHHHHHHhcC-CCCChhHHHHHHHH-hhcCC-CCCChHHHHHHCCC-----cccHHHHhh---------HHHHHHHHh
Confidence 899999999998 76 3333333322 12111 12234444554432 146777766 579999999
Q ss_pred CCCcchHHH
Q 011501 278 SVAAPTIES 286 (484)
Q Consensus 278 gvp~p~~~~ 286 (484)
|+|+|....
T Consensus 292 Gi~~P~~~~ 300 (313)
T PRK06249 292 GCAMPRVEM 300 (313)
T ss_pred CCCCcHHHH
Confidence 999998664
No 76
>PLN02256 arogenate dehydrogenase
Probab=99.49 E-value=2.6e-12 Score=128.05 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=114.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++..+.+.++++.. .+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~--~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEE--HPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhC--CCCEEEEecCHH-H
Confidence 478999999999999999999999999999999642 222221 24556778777531 289999999986 7
Q ss_pred HHHHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHh--hhcCCcc-cc-------CCCHH
Q 011501 83 VDQTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEG--ARYGPSL-MP-------GGSFE 150 (484)
Q Consensus 83 v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~--a~~g~~i-~~-------gg~~~ 150 (484)
+.++++++ .+.++++.+|+|.++++-.....+.+.+. .+..|+.+ |+.|.+.+ ...+..+ .. +.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 88999888 67788999999999987444444444332 35678885 88877643 2233322 21 23678
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
+++.++.+++.+|+++ +.+.+
T Consensus 184 ~~~~l~~l~~~lGa~v-------~~~~~ 204 (304)
T PLN02256 184 RCERFLDIFEEEGCRM-------VEMSC 204 (304)
T ss_pred HHHHHHHHHHHCCCEE-------EEeCH
Confidence 8999999999999874 66655
No 77
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.49 E-value=6e-13 Score=133.32 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHHH-------hhhcCCC----------CeeecCC--HhHHHhhc
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKQEGNL----------PLYGFHD--PESFVHSI 67 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~~~~~-------~~~~~~~----------~~~~~~s--~~e~~~~l 67 (484)
||.++|..++.+|++|.+||++++. ++...+. ....+.. +++.+.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 1111111 0000000 3555544 5566666
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHH----HcCCeEEecc-------CCCCHH
Q 011501 68 QKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVA----ELGLLYLGMG-------VSGGEE 135 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~p-------v~gg~~ 135 (484)
+|+||.|||++.+++..+ .++.+.++++.+| +||+++-...++++.+. ..|.||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888666 6788888888877 55555556667777663 3488999888 54443
Q ss_pred hhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 136 GARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 136 ~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
++++++++.+.++++.+|+.+ +++++.+ |+ +.| .....+++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~-------v~v~d~~-Gf----i~n---ri~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVP-------VVCGPSP-GY----IVP---RIQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcE-------EEecCCC-Cc----chH---HHHHHHHHHHHHHHHhCC-CCH
Confidence 568999999999999999764 8888754 43 233 345677899999999988 999
Q ss_pred HHHHHHHH
Q 011501 216 EELQQVFS 223 (484)
Q Consensus 216 ~~i~~~~~ 223 (484)
+++.+++.
T Consensus 209 e~iD~a~~ 216 (314)
T PRK08269 209 EDIDKAIR 216 (314)
T ss_pred HHHHHHHH
Confidence 99998873
No 78
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.48 E-value=2.7e-12 Score=125.83 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee--ecCCH-hHHHhhcCCCcEEEEecC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY--GFHDP-ESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~--~~~s~-~e~~~~l~~advIi~~vp 78 (484)
.+++|+|+|+|.||..+|+.|.++|+.|.+++++........+... ++. ...+. .+.+.. +|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~~~---aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAAAE---ADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhhhhccc---CCEEEEecc
Confidence 4579999999999999999999999998777666544322222111 111 11222 333333 899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCH--HhhhcCC-cc-ccCC--CHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGE--EGARYGP-SL-MPGG--SFEA 151 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~--~~a~~g~-~i-~~gg--~~~~ 151 (484)
-. ++.++++++.+.+++|.+|+|.+++.-...+...+...+.. +|++. |++|++ ..-..+. .+ .++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 97 89999999999999999999999998666655555544444 89987 788773 3333455 33 3443 5678
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
++++..+++.+|+++ +++.+
T Consensus 152 ~~~~~~~~~~~ga~~-------v~~~~ 171 (279)
T COG0287 152 VEEVKRLWEALGARL-------VEMDA 171 (279)
T ss_pred HHHHHHHHHHcCCEE-------EEcCh
Confidence 899999999999874 66654
No 79
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.47 E-value=4e-12 Score=123.18 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=126.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
..+||+|||+|.||.+++..|+++|+ + +++++| ++++.+.+.+.. ++..+.+.++++++ +|+||++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViia 73 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLA 73 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEe
Confidence 35789999999999999999998873 3 778887 467777766532 24566788888876 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhhhcCC-cc--ccCCCHHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGARYGP-SL--MPGGSFEAY 152 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a~~g~-~i--~~gg~~~~~ 152 (484)
+|+. ...++++++.+.++ +++||+++.+..... +.+.+. .+..+ ..+|-.. .....|. .+ -..++++..
T Consensus 74 vp~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~ 146 (245)
T PRK07634 74 MPPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHK 146 (245)
T ss_pred cCHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHH
Confidence 9987 77899999888775 678888877764332 333332 22222 3345332 2233443 22 334688899
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
+.++.+|+.+|.. +++.+. -..+.+--..-++.+..+..+.++ +.+.| +++++..+++..
T Consensus 147 ~~v~~lf~~~G~~--------~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 147 ETLQLILKGIGTS--------QLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHHHhCCCE--------EEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 9999999999964 334321 111111111122333333333333 56777 999998888744
No 80
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.45 E-value=2.8e-12 Score=126.36 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=127.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~ 63 (484)
|+.++|||||.|.||.++|..++..||+|.++|++++.+++...... ..|.+ +++...++.+
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~- 79 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA- 79 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH-
Confidence 56789999999999999999999988999999999876554432211 11100 2344444442
Q ss_pred HhhcCCCcEEEEecCCCchHHH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH--H--cCCeEEeccCCCCHHhhh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA--E--LGLLYLGMGVSGGEEGAR 138 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~--~g~~~i~~pv~gg~~~a~ 138 (484)
++.||+||.+|+.+..++. ++.++-...+++.|+-..+++.+.+ ++++.+. + -|.||+..|....-.
T Consensus 80 ---l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV--- 151 (307)
T COG1250 80 ---LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV--- 151 (307)
T ss_pred ---hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE---
Confidence 3349999999999988874 4477777776666554433333322 3344432 1 166776654221110
Q ss_pred cCCccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 139 YGPSLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 139 ~g~~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
=++.|- ++++++.+..+.+.+++. | + +...-.| ++.|.+. ..++.|++.+..+.. .+++
T Consensus 152 ---EvI~g~~T~~e~~~~~~~~~~~igK~-----~--v-v~~D~pG----Fi~NRil---~~~~~eA~~l~~eGv-a~~e 212 (307)
T COG1250 152 ---EVIRGEKTSDETVERVVEFAKKIGKT-----P--V-VVKDVPG----FIVNRLL---AALLNEAIRLLEEGV-ATPE 212 (307)
T ss_pred ---EEecCCCCCHHHHHHHHHHHHHcCCC-----C--E-eecCCCc----eehHhHH---HHHHHHHHHHHHhCC-CCHH
Confidence 133342 789999999999999943 2 2 2223344 3445444 456699999999877 9999
Q ss_pred HHHHHHH
Q 011501 217 ELQQVFS 223 (484)
Q Consensus 217 ~i~~~~~ 223 (484)
++..++.
T Consensus 213 ~ID~~~~ 219 (307)
T COG1250 213 EIDAAMR 219 (307)
T ss_pred HHHHHHH
Confidence 9999874
No 81
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=3.7e-12 Score=139.24 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=113.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~~-~ 437 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSIL-S 437 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCChH-H
Confidence 479999999999999999999999999999999643 333222 24556788887652 289999999975 8
Q ss_pred HHHHHHHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcC---Cc-----cccCCCHHHH
Q 011501 83 VDQTIKTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYG---PS-----LMPGGSFEAY 152 (484)
Q Consensus 83 v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g---~~-----i~~gg~~~~~ 152 (484)
+.++++++.. .+++|.+|+|++++. ....+..+.+...+..|+ ..|++|.+.+ ..| .. .+++++.+..
T Consensus 438 ~~~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~ 515 (667)
T PLN02712 438 TEKVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRV 515 (667)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchH
Confidence 8899988876 578899999999997 344444444445578888 5799988754 233 11 3345555444
Q ss_pred H---HHHHHHHHHhccCCCCCCceEEeCC
Q 011501 153 K---HIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 153 ~---~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
+ .+..+++.+|.++ +.+.+
T Consensus 516 ~~~~~l~~l~~~lGa~v-------v~ms~ 537 (667)
T PLN02712 516 SRCDSFLDIFAREGCRM-------VEMSC 537 (667)
T ss_pred HHHHHHHHHHHHcCCEE-------EEeCH
Confidence 4 4458888888763 66655
No 82
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.43 E-value=4.3e-13 Score=140.97 Aligned_cols=119 Identities=15% Similarity=0.293 Sum_probs=100.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHccCC-CCCC
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRI---WKGGCIIRAIFLDRIKKAYDRNP-DLAN 395 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~Gcii~s~ll~~i~~~~~~~~-~~~~ 395 (484)
+.|+||++||+||+|+|+.|++++|+|.+++++ .++|..++.++ |+.| ..+|++++...+.+..++ ..+.
T Consensus 180 ~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~ 253 (493)
T PLN02350 180 PGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDG 253 (493)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCC
Confidence 358999999999999999999999999999863 24898888777 9988 789999999888876553 2225
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 396 VLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 396 ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
.+++...++..+|++| +|+++.|.++|+|+|+|++++. |.++++.+|..
T Consensus 254 f~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 254 YLVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred chHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 6777778888889999 9999999999999999999996 88888877755
No 83
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.41 E-value=1.4e-12 Score=107.49 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=77.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 79 (484)
||||||.|+||.+|+..|.++| ++|.++ +|++++.+++.++.. +..+. +..++++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 7999999999999999999999 899954 999999999887653 44555 88999998 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
. ++.++++++ +...++++||+..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 6 899999999 77789999999865
No 84
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.40 E-value=3.6e-12 Score=121.52 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=110.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc-C--CCCee-ecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE-G--NLPLY-GFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~-~--~~~~~-~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||+||| +|.||..++..|+++|++|.+|+|++++.+.+....... + +.... ...+..+.++. +|+||+|||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 899999999999999999999999999887776532110 0 00011 12355666666 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHH---------------HHHHHHHHHHcCCeEEec-c-----CCCCHHhh
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN---------------TERRQKAVAELGLLYLGM-G-----VSGGEEGA 137 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~i~~-p-----v~gg~~~a 137 (484)
.. .+.++++++.+.+. +++|||+++....+ ++.+.+.+.. +.+++-+ | +..+. ..
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 87 78888888877664 58999998876431 1333333322 1333333 2 22221 11
Q ss_pred hcCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchh
Q 011501 138 RYGP-SLMPGGSFEAYKHIEDILLKV-AAQVPDSGPCVTYVGKGGS 181 (484)
Q Consensus 138 ~~g~-~i~~gg~~~~~~~v~~ll~~i-~~~~~~~~~~~~~~G~~g~ 181 (484)
..+. .+++|.|+++.+.+..+.+.+ |-++ +.+|+...
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~ 192 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLEN 192 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhh
Confidence 1234 556666788888999999999 8764 77887443
No 85
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.38 E-value=1.8e-12 Score=112.03 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccc-cccccCCCCchhHHHhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 258 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~l~~i~ 258 (484)
|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 443 5688999999999
Q ss_pred hhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 259 DKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 259 ~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
||+. ++++.|++.|+|+|+...+ .+.+..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9996 9999999999999988765 5555444
No 86
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.37 E-value=3e-12 Score=115.58 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=91.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---CC----CeeecCCHhHHHhhcCCCcEEEEec
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---NL----PLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+.+.+.. +. ++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 7999999999999999999999999999999999998887654211 01 46778899999887 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC-hHH----HHHHHHHHHHcCCeEEeccCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW-YEN----TERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~----~~~~~~~l~~~g~~~i~~pv~g 132 (484)
|.. ..+++++++.++++++.+||.++.+. +.+ .+.+.+.+....+.++..|-+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A 136 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFA 136 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--H
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHH
Confidence 997 78999999999999999999988765 222 2223333333335566666543
No 87
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.36 E-value=1.4e-11 Score=123.34 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=147.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-h---cCCC-Ceee-cCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-Q---EGNL-PLYG-FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-~---~~~~-~~~~-~~s~~e~~~~l~~advIi~~ 76 (484)
.|||+|||+|.||+-+|..|+++|++|++++|++++++.+.+.++ . .++. .... ..+.+ .+...|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~----~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETAD----AAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcc----cccccCEEEEE
Confidence 368999999999999999999999999999999888887765421 0 0000 0000 11111 12348999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC-CHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG-SFE 150 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg-~~~ 150 (484)
|+.. +++++++.+.+.+.++++|+-.-|+.- ..+.+.+.+... |+.++++...+.-.-...+. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~-~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLG-SQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCC-CHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9987 788999999999999999998888763 223344443321 22222221111100011122 122332 223
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHhCC
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVGK 212 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~ 212 (484)
..+++.++|+.-+-.. .+..+.-...+.|++.|... .....++.|++.++++.|
T Consensus 156 ~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G- 227 (305)
T PRK05708 156 TAPAWLDDLREAGIPH-------EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG- 227 (305)
T ss_pred chHHHHHHHHhcCCCC-------ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-
Confidence 3445555665443221 22223444556666655311 134577899999999998
Q ss_pred CC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 213 LS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 213 ~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
++ .+.+.+.+........ ....++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 75 3333333322111111 112344445544321 35666655 5789999999999987653
No 88
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.36 E-value=4.7e-11 Score=119.26 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=127.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.++|.+|.+.|++|.+++++.++........ ++... +++++++. +|+|+++||+. ..
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~~ 86 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-VQ 86 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-HH
Confidence 6899999999999999999999999999988766544433221 24433 88888887 99999999987 45
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHh-----hhcCC-ccc-cCCC--HHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEG-----ARYGP-SLM-PGGS--FEAY 152 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~-----a~~g~-~i~-~gg~--~~~~ 152 (484)
..++ +++.+.+++|++|+.+........ +.....++..+- +|-..+..- ...|. +++ +..+ .++.
T Consensus 87 ~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~----~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~ 162 (330)
T PRK05479 87 AEVYEEEIEPNLKEGAALAFAHGFNIHFG----QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAK 162 (330)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCChhhc----eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHH
Confidence 8888 789999999999977766543222 122223443333 465544411 12344 444 5555 8889
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
+.+..++..+|.....-..+.+ -.+..+--|= - +..+..+...++..++.++...| .+|+..
T Consensus 163 ~~a~~l~~aiG~~~~g~~~ttf-~~e~~~dl~g-e-q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 163 DLALAYAKGIGGTRAGVIETTF-KEETETDLFG-E-QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHcCCCccceeeeee-cccccccchh-h-HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 9999999999975310000011 1011000000 0 12233455678888899999999 999864
No 89
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.35 E-value=9e-12 Score=114.96 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=109.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
||+|+|+|.|+||.++|++|+++||+|.+-+|+.++ .+...+.... .+ ...++++.++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~i-~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----LI-TGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----cc-ccCChHHHHhc---CCEEEEeccHH-
Confidence 468999999999999999999999999999665554 4444333221 22 33477777777 99999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh---------------HHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY---------------ENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~---------------~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~- 141 (484)
++.+++.++...+. |+||||+++..+ ..++.+++.+... .++-+.+...-.........
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~ 150 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRD 150 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCcee
Confidence 78889999988775 999999999621 1122223333221 23333332221111111222
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhH
Q 011501 142 SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182 (484)
Q Consensus 142 ~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g 182 (484)
.+++|.|.++.+.+..+.+.+|-.. +-+|+...+
T Consensus 151 v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a 184 (211)
T COG2085 151 VLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENA 184 (211)
T ss_pred EEEecCcHHHHHHHHHHHHhcCcce-------eeccccccc
Confidence 5667778889999999999998664 666764433
No 90
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.35 E-value=9.1e-11 Score=113.51 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=129.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+... +..+++.+++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 368999999999999999999999 689999999999886666442 3346777888887 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC-ccccC--CCHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP-SLMPG--GSFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~-~i~~g--g~~~~~~~ 154 (484)
+. .+.+++.++.+ ..++++||..-...+ ...+.+.+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 Pq-~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 PQ-DLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred hH-hHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 85 89999999988 778999998766653 333444443 333333 3532 22334555 44443 36778889
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHH
Q 011501 155 IEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFS 223 (484)
Q Consensus 155 v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~ 223 (484)
+..+|+.+|. ++++.+.---.++-+ .+-.-+.+.++.|++.-+. +.| ++.++..++..
T Consensus 144 v~~l~~~~G~--------v~~v~E~~~da~Tai--sGSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGK--------VVEVEESLMDAVTAL--SGSGPAYVFLFIEALADAGVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCC--------eEEechHHhhHHHHH--hcCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9999999996 355543111001001 1111123344455554444 556 99998888763
No 91
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.34 E-value=2e-11 Score=135.15 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=132.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~~~ 65 (484)
..+|+|||.|.||..+|..++.+|++|.+||++++.++...+... ..+.. +++.+.+.+++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 358999999999999999999999999999999987665432211 11100 46666777543 4
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccC-CCCHHhhhc
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGV-SGGEEGARY 139 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv-~gg~~~a~~ 139 (484)
. +|+||.+||.+..++ +++.++.+.++++.|+...|++.+. .++++.+.. .|.||+..|- +.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI--KDIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998877 5558888888888777655444432 234444432 2556654331 1111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 140 GPSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 140 g~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
=|+.| .++++++.+..+++.+++.+ +.+++ ..| ++.|.+.. ..++|++.+... | +++++
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----Fi~NRi~~---~~~~ea~~lv~e-G-v~~~~ 544 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPG----FYTTRCLG---PMLAEVIRLLQE-G-VDPKK 544 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCC----chHHHHHH---HHHHHHHHHHHc-C-CCHHH
Confidence 13443 37899999999999999753 66654 444 45565553 566999999865 6 89999
Q ss_pred HHHHHHhh
Q 011501 218 LQQVFSEW 225 (484)
Q Consensus 218 i~~~~~~~ 225 (484)
|..++..+
T Consensus 545 ID~a~~~~ 552 (737)
T TIGR02441 545 LDKLTTKF 552 (737)
T ss_pred HHHHHHHc
Confidence 99986543
No 92
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.34 E-value=3.5e-11 Score=122.34 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=109.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHh-CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAE-KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 579999999 9999999999996 4899999998511 13466777776 99999999997
Q ss_pred chHHHHHHHHhhh---cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHH-hhhcCC-ccc-cCCCHHHHH
Q 011501 81 SPVDQTIKTLSVY---MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEE-GARYGP-SLM-PGGSFEAYK 153 (484)
Q Consensus 81 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~-~a~~g~-~i~-~gg~~~~~~ 153 (484)
.+.++++++.++ ++++.+|+|.++++..-.... .+.+..|++. |++|++. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998876 789999999999984433332 3446679986 8887754 334555 444 444556678
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCC
Q 011501 154 HIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 154 ~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
.++.+++.+|+++ +.+.+
T Consensus 138 ~v~~l~~~~Ga~v-------~~~~a 155 (370)
T PRK08818 138 WVQSLCSALQAEC-------VYATP 155 (370)
T ss_pred HHHHHHHHcCCEE-------EEcCH
Confidence 8999999999874 66655
No 93
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.33 E-value=1.8e-10 Score=113.82 Aligned_cols=192 Identities=12% Similarity=0.103 Sum_probs=123.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..++++. +|+||+|+|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilavp 73 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICVP 73 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEecC
Confidence 68999999999999999999998 7899999875 34444443221 13446677787776 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhhhcCC-ccccCC--CHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGARYGP-SLMPGG--SFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~ 154 (484)
+. .+.++++++.+++.++.+||...+.... .++.+.+.. ..+ --+|-. +.....|. .+..+. +++..+.
T Consensus 74 p~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~ 146 (277)
T PRK06928 74 PL-AVLPLLKDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSR 146 (277)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHH
Confidence 75 7899999999988888888888777533 244444432 122 224533 23345566 444432 5667788
Q ss_pred HHHHHHHHhccCC---CCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 011501 155 IEDILLKVAAQVP---DSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLSNEELQQVFS 223 (484)
Q Consensus 155 v~~ll~~i~~~~~---~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~ 223 (484)
++.+|+.+|.-.. +....+.-+...|.+.. ..+.|++.- +.+.||++.++..++..
T Consensus 147 v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~-------------~~~~~al~~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 147 LEETLSHFSHVMTIREENMDIASNLTSSSPGFI-------------AAIFEEFAEAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHhCCCEEEEchhhCceeeeeecCHHHHH-------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999996321 11122233332344433 222333322 23443499998888764
No 94
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.33 E-value=3.7e-11 Score=133.05 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=130.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|+|||+|.||..+|..++.+|++|++||++++.++...+.. ...+.. +++.+++++++ +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-ER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-cC
Confidence 5899999999999999999999999999999998765432211 111000 46666777543 44
Q ss_pred cCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEecc-CCCCHHhhhcC
Q 011501 67 IQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMG-VSGGEEGARYG 140 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-v~gg~~~a~~g 140 (484)
+|+||.++|.+..++ +++.++.+.++++.++...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 393 ---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV------ 461 (715)
T PRK11730 393 ---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV------ 461 (715)
T ss_pred ---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE------
Confidence 999999999998777 55588888888877776555554332 344444321 45555433 11111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+. ...| ++.|.+... +++|++.+.+ .| .+++++
T Consensus 462 -Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pG----fv~nRi~~~---~~~ea~~lv~-~G-a~~e~I 523 (715)
T PRK11730 462 -EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPG----FFVNRVLFP---YFAGFSQLLR-DG-ADFRQI 523 (715)
T ss_pred -EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCc----hhHHHHHHH---HHHHHHHHHH-cC-CCHHHH
Confidence 14444 37899999999999999764 5564 3444 455666444 4589999887 46 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99874
No 95
>PLN02712 arogenate dehydrogenase
Probab=99.32 E-value=8.4e-11 Score=128.71 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=107.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~-~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII-S 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-H
Confidence 368999999999999999999999999999998543 222221 24556788886531 289999999975 7
Q ss_pred HHHHHHHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHh--hhcCC-cccc----CCCH---H
Q 011501 83 VDQTIKTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEG--ARYGP-SLMP----GGSF---E 150 (484)
Q Consensus 83 v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~--a~~g~-~i~~----gg~~---~ 150 (484)
+.++++++. +.++++.+|+|++++.......+.+.+ ..+..|+.. |+.|.+.. ...+. .++. +.++ +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678889999999988743333333333 346778875 88877632 12233 2233 2222 3
Q ss_pred HHHHHHHHHHHHhccC
Q 011501 151 AYKHIEDILLKVAAQV 166 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~ 166 (484)
.++.++.+++.+|+++
T Consensus 200 ~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 200 RCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4566779999999874
No 96
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.32 E-value=5.8e-11 Score=132.92 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=115.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.+.. .....+.+++++. +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 58999999999999999999999 4899999999887776543310 1134456666665 99999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHh--------hhcCC-c-cc--cCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEG--------ARYGP-S-LM--PGGS 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~--------a~~g~-~-i~--~gg~ 148 (484)
.+.++++.+.++++++.+|+|+++++......+.+.+....++|+. .|++|++.. ...+. . +. .+++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 7899999999988899999999999866666666555444667765 588876531 11232 2 22 2357
Q ss_pred HHHHHHHHHHHHHHhcc
Q 011501 149 FEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~ 165 (484)
++.++.++++|+.+|.+
T Consensus 155 ~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 155 PAALARVDRLWRAVGAD 171 (735)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 88899999999999975
No 97
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.32 E-value=4.2e-11 Score=132.35 Aligned_cols=190 Identities=15% Similarity=0.200 Sum_probs=131.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|+|||.|.||..+|..++.+|++|+++|++++.+++..+.. ...+.. +++.+.+.+++ +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-DN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-cC
Confidence 5799999999999999999999999999999998766543221 111000 45666666443 44
Q ss_pred cCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEecc-CCCCHHhhhcC
Q 011501 67 IQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMG-VSGGEEGARYG 140 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-v~gg~~~a~~g 140 (484)
+|+||.+||.+..++ +++.++.+.++++.|+...|++.+.+ ++++.+.. .|.||+..| ++.-.
T Consensus 393 ---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv------ 461 (714)
T TIGR02437 393 ---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV------ 461 (714)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE------
Confidence 999999999998777 55588888888887776555554333 34444432 155665433 11111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. ..+.|++.+.+ .| .++++|
T Consensus 462 -Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----fi~NRl~~---~~~~ea~~l~~-eG-~~~~~I 523 (714)
T TIGR02437 462 -EVIRGEKSSDETIATVVAYASKMGKTP-------IVVND-CPG----FFVNRVLF---PYFGGFSKLLR-DG-ADFVRI 523 (714)
T ss_pred -eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeCC-ccc----chHHHHHH---HHHHHHHHHHH-CC-CCHHHH
Confidence 14444 37899999999999999763 66653 445 45566654 44589999986 46 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99874
No 98
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.32 E-value=5.5e-11 Score=131.38 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=128.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHh-------hhcCC----------CCeeecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KQEGN----------LPLYGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~----------~~~~~~~s~~e~~~ 65 (484)
++|+|||+|.||..+|..++ .+|++|++||++++.++...+.. ...+. .+++.++++++ ++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-FK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-hc
Confidence 58999999999999999998 58999999999998655433211 00000 04666677754 34
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g 140 (484)
. +|+||.++|.+..++ +++.++...++++.|+...|++.+.+ ++++.+... |.||+..|..-.-.
T Consensus 384 ~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV----- 453 (699)
T TIGR02440 384 D---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV----- 453 (699)
T ss_pred c---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE-----
Confidence 4 999999999997777 45588888887777666554444332 344444322 45555443111100
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. .+++|++.+.+ .| ++++++
T Consensus 454 -Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~d-~pG----fi~nRl~~---~~~~Ea~~l~~-~G-~~~~dI 515 (699)
T TIGR02440 454 -EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVAD-KAG----FYVNRILA---PYMNEAARLLL-EG-EPVEHI 515 (699)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEcc-ccc----hHHHHHHH---HHHHHHHHHHH-CC-CCHHHH
Confidence 14444 37899999999999999764 66643 445 44555544 45699999987 56 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 516 D~a~~ 520 (699)
T TIGR02440 516 DKALV 520 (699)
T ss_pred HHHHH
Confidence 98874
No 99
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.32 E-value=7.8e-12 Score=115.39 Aligned_cols=147 Identities=16% Similarity=0.306 Sum_probs=96.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-------cCCC----------CeeecCCHhHHHhhc
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-------EGNL----------PLYGFHDPESFVHSI 67 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-------~~~~----------~~~~~~s~~e~~~~l 67 (484)
||+|||+|.||.++|..++.+|++|.+||++++..+...+.... .+.. ++...+++++++ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876554432111 1111 577888998888 5
Q ss_pred CCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--c--CCeEEeccCCCCHHhhhcCC-
Q 011501 68 QKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--L--GLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~pv~gg~~~a~~g~- 141 (484)
+|+||-++|....++ +++.++...++++.+|...|++.+. .++++.+.. + |+||+..|-. -+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~--------~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHL--------MPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT----------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEeccccccc--------Cce
Confidence 999999999987777 4558888888888887766665532 234443322 1 5666643311 11
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhcc
Q 011501 142 -SLMPG--GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 142 -~i~~g--g~~~~~~~v~~ll~~i~~~ 165 (484)
=++.| .++++++.+..+++.+++.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 14444 3889999999999999865
No 100
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.29 E-value=8.4e-10 Score=108.01 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=118.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|..|||+|||+|.||.+++..|.++|. +++++||++++. ......++.++++. +|+||+|
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vila 64 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLA 64 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEE
Confidence 666899999999999999999999872 499999986541 12345677787776 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEeccCCCCHHhhhcCC-ccccC--CCHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLGMGVSGGEEGARYGP-SLMPG--GSFEA 151 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pv~gg~~~a~~g~-~i~~g--g~~~~ 151 (484)
+|+. ++++++.++.+++.++.+|.++++......++. +... -++++ | +-+.....|. .+..+ .+++.
T Consensus 65 vkp~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~m--P--n~p~~~g~g~t~i~~~~~~~~~~ 136 (260)
T PTZ00431 65 VKPD-LAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM---VGVEAKIVRVM--P--NTPSLVGQGSLVFCANNNVDSTD 136 (260)
T ss_pred eCHH-HHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH---cCCCCeEEEEC--C--CchhHhcceeEEEEeCCCCCHHH
Confidence 9876 899999999988876666777777764433322 2211 12222 2 1223334555 33332 25677
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
.+.++.+|+.+|.- +.+.+. -....+--.--++.+..+..+.++ +.+.| ++.++..++..
T Consensus 137 ~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~ 198 (260)
T PTZ00431 137 KKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVL 198 (260)
T ss_pred HHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 88999999999963 333221 000000001122333333344443 34566 99999888764
No 101
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.28 E-value=6.9e-12 Score=108.28 Aligned_cols=110 Identities=16% Similarity=0.304 Sum_probs=75.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+||+|||.|++|..|++.|.++||.|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++ +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd-a 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD-A 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-H
Confidence 6899999999999999999999999875 5899877777665432 1344567777766 99999999998 8
Q ss_pred HHHHHHHHhhh--cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 83 VDQTIKTLSVY--MEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 83 v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++.++|... ..+|++|++||.....+. .+.+.++|....
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~v---L~p~~~~Ga~~~ 123 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDV---LAPARERGAIVA 123 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGG---GHHHHHTT-EEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHh---hhhHHHCCCeEE
Confidence 99999999987 789999999999876554 344556666443
No 102
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.28 E-value=9.7e-11 Score=129.73 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=128.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~ 65 (484)
.+|+|||+|.||.++|..++ .+|++|++||++++.++...+.. ...+.. +++.+++.++ ++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-FK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-hc
Confidence 58999999999999999999 88999999999998655532211 000000 4666667643 34
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g 140 (484)
. +|+||.++|.+..++ +++.++...++++.++...|++.+.+ ++++.+... |.||+..|-.-. -
T Consensus 389 ~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~------l 457 (708)
T PRK11154 389 H---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMP------L 457 (708)
T ss_pred c---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCc------e
Confidence 4 999999999987777 45588888888888776655554333 344444322 455554331100 0
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
.=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. .+++|++.++++ | ++++++
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~d-~pG----fi~nRl~~---~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALAKKQGKTP-------IVVRD-GAG----FYVNRILA---PYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEec-cCc----HHHHHHHH---HHHHHHHHHHHc-C-CCHHHH
Confidence 024444 38899999999999998753 55543 445 44455543 555999999886 6 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 88864
No 103
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.26 E-value=4.8e-10 Score=111.94 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=154.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC-CCC----eeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLP----LYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~-~~~----~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++++.+-.-. ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 5899999999999999999999999999998876 777776532100 001 001111112 2234999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHh--hhcCC-c--cccCCCH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEG--ARYGP-S--LMPGGSF 149 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~--a~~g~-~--i~~gg~~ 149 (484)
+. +++++++.+.+.+.+.+.|+-.-|+. ...+.+.+.+... |+.+.++--.+.... ...|. . .+.|+++
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 98 89999999999999999888888876 3444454444433 222332221111111 11233 2 2345566
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHH
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVLK 208 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N---------------------~i~~~~~~~~~Ea~~l~~ 208 (484)
+.++.+..+|+.-+-+. .+..+.-.....|++-| .......+++.|...+++
T Consensus 155 ~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 155 ELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred HHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 77788888776655432 23333455555666555 233445677889999999
Q ss_pred HhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 209 SVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 209 ~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
+.| +. .+.+.+++....... .....++..+....+ .-.+|.|.. ..++.|+++|+++|+...
T Consensus 228 ~~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr-----~tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 228 AEG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGR-----PTEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred hcc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCC-----cccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 887 54 433333332212221 112223334443322 135677755 478999999999998764
No 104
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=99.11 E-value=7.6e-09 Score=99.65 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=163.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhh---c---------CCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQ---E---------GNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~e~~~~l~ 68 (484)
|+||+.||+|.+|.+-+..++-+. .+|+++|.+..++.++...... . .+-++-..++.+..+.+
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 368999999999999887777553 5789999998887655421000 0 01145567788888877
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH--HcCCeE--EeccC
Q 011501 69 KPRVIIMLVKAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA--ELGLLY--LGMGV 130 (484)
Q Consensus 69 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--i~~pv 130 (484)
+|+||++|.++. -+++....++......+||+..||++...++.+.+.+. .+|++| +..|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996652 23445566666667789999999999999988888775 346655 55564
Q ss_pred CCCHHhh---hcCC-ccccCCC--HHHHHH---HHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 131 SGGEEGA---RYGP-SLMPGGS--FEAYKH---IEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 131 ~gg~~~a---~~g~-~i~~gg~--~~~~~~---v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
+-.+..| ...| .++.||+ ++-+.. +..+++.+-.+- -+...+.-+++..|++.|++.+--+..++
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~------~iittntwsselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPRE------QIITTNTWSSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCccc------ceeeccccHHHHHHHHHHHHHHHHHhhhH
Confidence 4333222 2345 6788884 444444 445555554321 24445679999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhh
Q 011501 202 EAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDK 260 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~ 260 (484)
-+.++|++.| .+..++..++. +-.++....|...-.|++.+.-+.++..
T Consensus 232 s~salceatg-adv~eva~avg---------~d~rig~kfl~asvgfggscfqkdilnl 280 (481)
T KOG2666|consen 232 SMSALCEATG-ADVSEVAYAVG---------TDSRIGSKFLNASVGFGGSCFQKDILNL 280 (481)
T ss_pred HHHHHHHhcC-CCHHHHHHHhc---------ccccccHHHhhcccCcCchhHHHHHHHH
Confidence 9999999999 99988877652 1123333444444457776666655553
No 105
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.10 E-value=8.4e-10 Score=111.40 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=93.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+++|+.|...|++|.+||++++....+ .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653221 1234688888887 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..++ +++.+.+++|.++|+++.+..-+...+.+.+.+..+.....-|+-
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 7776 677888999999999999998899899988887655444333443
No 106
>PRK07574 formate dehydrogenase; Provisional
Probab=99.09 E-value=9.6e-10 Score=112.60 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=93.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... ++....+++++++. +|+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999986432222111 24556789999887 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ ++.+..+++|.++|+++....-+...+.+.+.+..+..
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~G 305 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAG 305 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccE
Confidence 9998 56888899999999999999999999999998765543
No 107
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.08 E-value=8e-09 Score=96.95 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=89.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|+|+|+|.||..+|+.|.+.|++|+++|+++++++.+.+... .... +.+++... .+|+++.|...+.-
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v-~~~~l~~~--~~Dv~vp~A~~~~I 98 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVV-APEEIYSV--DADVFAPCALGGVI 98 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-cchhhccc--cCCEEEeccccccc
Confidence 368999999999999999999999999999999988887766421 2333 33455442 39999977655433
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccC-CCCHHhhhcCCccccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGV-SGGEEGARYGPSLMPGGS 148 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv-~gg~~~a~~g~~i~~gg~ 148 (484)
.++.+ +.+ +.++|++..|....+ .+..+.+.++|+.|++ .-. +||. ..+...++++.
T Consensus 99 ~~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~ 157 (200)
T cd01075 99 NDDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGN 157 (200)
T ss_pred CHHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCc
Confidence 33333 334 467999999987544 5678889999999988 333 4432 22223455554
No 108
>PLN03139 formate dehydrogenase; Provisional
Probab=99.06 E-value=1.5e-09 Score=111.18 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=96.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|.+|.+||+++...+..... ++....++++++.. +|+|++++|...++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 589999999999999999999999999999986433322221 24456789999987 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+.++ .+++..+++|.++|+++....-+...+.+.+++..+.....-|+
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~ 318 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence 9988 57888899999999999999999999999988765543333333
No 109
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=99.06 E-value=1.2e-08 Score=101.27 Aligned_cols=243 Identities=16% Similarity=0.205 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cCCC---CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHH
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ----EGNL---PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQT 86 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~~~---~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 86 (484)
||..+|..|+++|++|++++|+ +..+.+.+.+.. .++. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666666554311 0000 0111223333 23489999999997 78999
Q ss_pred HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC---CHHHHHHHHHH
Q 011501 87 IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG---SFEAYKHIEDI 158 (484)
Q Consensus 87 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg---~~~~~~~v~~l 158 (484)
++.+.+.+.++.+|+...|+. ...+.+.+.+... |+.++++-..+.......+. .+..|. ..+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 999999998889998888875 2233344444322 12222222221111111122 233333 12344555556
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHhCCCC--H
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLS--N 215 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~~~Ea~~l~~~~g~~~--~ 215 (484)
|+..+-+ +....+.-...+.|++.|. .......++.|+..++++.| ++ .
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6554422 1223334444455555442 23445567899999999988 75 4
Q ss_pred HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 216 EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
+.+.+.+.........+ ..++..++...+ ...+|.+.. +.++.|+++|+|+|....
T Consensus 227 ~~~~~~~~~~~~~~~~~-~sSm~~D~~~gr-----~tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAEN-TSSMLQDLLRGR-----RTEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCCC-CChHHHHHHcCC-----cchHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 44444443322211111 123333443322 135666655 578999999999998764
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.04 E-value=8.9e-10 Score=98.90 Aligned_cols=118 Identities=22% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||+|.||..++..|.+.| ++|+++||++++.+++.+...... ......+.+++++. +|+||+|+|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998888776543100 00123456665555 999999999985
Q ss_pred h-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 P-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+ ++.+... ...++++.+++|+++.++. + .+.+.+++.|+.|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeCC
Confidence 4 2222111 1236789999999988544 4 7778888888887764
No 111
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.03 E-value=1.8e-09 Score=109.20 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+|||++.... .... +.. ..++++++++ +|+|++++|...++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 3588898887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ .+.+..+++|.++|++++...-+...+.+.+.+..+..
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~g 261 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAG 261 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEE
Confidence 8888 67888899999999999999999999999887754443
No 112
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.02 E-value=1.5e-08 Score=101.49 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=98.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
-++|||||+|+||.++|++|.+.|++|+++++. +++.+.+.+. ++.. .+..++++. +|+|+++||+..
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~-------Gv~~-~s~~ea~~~---ADiVvLaVpp~~ 71 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATED-------GFKV-GTVEEAIPQ---ADLIMNLLPDEV 71 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHC-------CCEE-CCHHHHHhc---CCEEEEeCCcHh
Confidence 468999999999999999999999998876654 3444444432 2443 357787777 999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe-EEeccCCCCHHh---h--hcCC-ccc-cCC--CHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL-YLGMGVSGGEEG---A--RYGP-SLM-PGG--SFEA 151 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~~pv~gg~~~---a--~~g~-~i~-~gg--~~~~ 151 (484)
+...+.+++.+.++++.+|.-...... ......+ ..+.. +.-+|-..+... . ..|. +++ ++. +.+.
T Consensus 72 ~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~ 147 (314)
T TIGR00465 72 QHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEA 147 (314)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHH
Confidence 677777889898888875444444332 1222222 22333 344675555420 1 2444 443 333 6678
Q ss_pred HHHHHHHHHHHhcc
Q 011501 152 YKHIEDILLKVAAQ 165 (484)
Q Consensus 152 ~~~v~~ll~~i~~~ 165 (484)
.+.+..++..+|..
T Consensus 148 ~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 148 MAIALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999964
No 113
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.02 E-value=3.8e-09 Score=97.40 Aligned_cols=198 Identities=17% Similarity=0.266 Sum_probs=132.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------HhhhcCCC-------CeeecCCHhH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-----------RAKQEGNL-------PLYGFHDPES 62 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-----------~~~~~~~~-------~~~~~~s~~e 62 (484)
|+.-||||+|.|.+|+.+|..++..||+|..||..++.+....+ .+.-.|++ .+..+++++|
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 77779999999999999999999999999999999875443322 11111111 3567889999
Q ss_pred HHhhcCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC
Q 011501 63 FVHSIQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP 141 (484)
Q Consensus 63 ~~~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~ 141 (484)
+++. +=.|-.|+|.+-.++.-+ +++-..+ ...+|+..||+...-+ ....-+..+.-..+..||...- .=|
T Consensus 81 ~vk~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy----fiP 151 (313)
T KOG2305|consen 81 LVKG---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY----FIP 151 (313)
T ss_pred HHhh---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc----ccc
Confidence 9997 777888999987777555 4444444 4566666666654333 2333343333345555654221 111
Q ss_pred --ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 142 --SLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 142 --~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
-+++. ..++.+++.+.+++.+|.++ +.+-.+. -| .+.|.+.+++ ++|.+.|....+ ++..+
T Consensus 152 LvElVPaPwTsp~tVdrt~~lM~sigq~p------V~l~rei-~G----f~lnriq~Ai---lne~wrLvasGi-l~v~d 216 (313)
T KOG2305|consen 152 LVELVPAPWTSPDTVDRTRALMRSIGQEP------VTLKREI-LG----FALNRIQYAI---LNETWRLVASGI-LNVND 216 (313)
T ss_pred hheeccCCCCChhHHHHHHHHHHHhCCCC------ccccccc-cc----ceeccccHHH---HHHHHHHHHccC-cchhh
Confidence 12332 47889999999999999764 3333332 23 3346666554 599999998776 99888
Q ss_pred HHHHH
Q 011501 218 LQQVF 222 (484)
Q Consensus 218 i~~~~ 222 (484)
+..++
T Consensus 217 vD~Vm 221 (313)
T KOG2305|consen 217 VDAVM 221 (313)
T ss_pred HHHHH
Confidence 88776
No 114
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.02 E-value=6e-09 Score=101.84 Aligned_cols=138 Identities=20% Similarity=0.342 Sum_probs=94.9
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcC
Q 011501 18 LALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYME 95 (484)
Q Consensus 18 lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~ 95 (484)
+|+.|.++| ++|++||++++..+...+.+.. .....+ .+.+.. +|+||+|||.. .+.++++++.++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----~~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----DEASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----SEEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----eeccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 578899999 6899999999988777665431 122333 455665 99999999987 78999999999999
Q ss_pred CCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCH----H----hhhcCC-ccc-cCC--CHHHHHHHHHHHHHH
Q 011501 96 KGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGE----E----GARYGP-SLM-PGG--SFEAYKHIEDILLKV 162 (484)
Q Consensus 96 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~----~----~a~~g~-~i~-~gg--~~~~~~~v~~ll~~i 162 (484)
+|.+|+|.++++-.....+.+.+. .++.|++. |+.|.+ . .-..|. .++ ++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998666655555444 67899986 777762 1 122444 333 333 568899999999999
Q ss_pred hccC
Q 011501 163 AAQV 166 (484)
Q Consensus 163 ~~~~ 166 (484)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9874
No 115
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.00 E-value=2.6e-09 Score=98.40 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=125.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-------cCC---------C------CeeecCCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-------EGN---------L------PLYGFHDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-------~~~---------~------~~~~~~s~ 60 (484)
++.|+|||.|.||+++|+.-+..|++|.++|++++.+.+..+...+ .+. + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 3579999999999999999999999999999999876655432111 000 0 24456667
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEec-cCCCCH
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGM-GVSGGE 134 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~-pv~gg~ 134 (484)
.+++.. +|+||.++-....++.- +..+-...++ +.|+-+.|++..-+ +++..++. .|.||+.. ||+--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~-~~il~tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKS-STILATNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhccc-ceEEeecccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 88888887666555533 3455444444 45555555543333 33333332 27888875 555443
Q ss_pred HhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 135 EGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 135 ~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
+..+.. -.+++.+..+..+-+.+|+.. +-+- .-.| .+.|.+. +-.+.|++++.++.. .+
T Consensus 166 EVir~~-----~TS~eTf~~l~~f~k~~gKtt-------Vack-DtpG----FIVNRlL---iPyl~ea~r~yerGd-As 224 (298)
T KOG2304|consen 166 EVIRTD-----DTSDETFNALVDFGKAVGKTT-------VACK-DTPG----FIVNRLL---IPYLMEAIRMYERGD-AS 224 (298)
T ss_pred hhhcCC-----CCCHHHHHHHHHHHHHhCCCc-------eeec-CCCc----hhhhHHH---HHHHHHHHHHHHhcC-Cc
Confidence 322211 126788888888888888653 3332 2333 4455543 455689999999987 99
Q ss_pred HHHHHHHHH
Q 011501 215 NEELQQVFS 223 (484)
Q Consensus 215 ~~~i~~~~~ 223 (484)
.++|...++
T Consensus 225 keDIDtaMk 233 (298)
T KOG2304|consen 225 KEDIDTAMK 233 (298)
T ss_pred HhhHHHHHh
Confidence 999988873
No 116
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.99 E-value=3.8e-09 Score=106.87 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=88.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|||||+|.||..+|+.|+ ..|.+|.+||+++... ... . +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~~-~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AAT-Y-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HHh-h-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 68999999999999999994 4688999999987542 111 1 3345689999887 9999999999877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.+.++ .++.+.+++|.++|++|++...++..+.+.+.+..+..
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 257 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKG 257 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 77665 46778899999999999999999999999987755443
No 117
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.98 E-value=2.8e-09 Score=106.16 Aligned_cols=113 Identities=16% Similarity=0.206 Sum_probs=91.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 58999999999999999888889999999998432 111 1124588998887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+.++ .+.+..+++|.++|++|.....+...+.+.+.+..+.....-|+
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8888 56778899999999999999999999999988764544333333
No 118
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.98 E-value=2.2e-09 Score=107.42 Aligned_cols=111 Identities=18% Similarity=0.259 Sum_probs=90.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|++|...|++|.+||++++....+.. .....+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~---------~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS---------FAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee---------ecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 58999999999999999999999999999997654221110 1123477888877 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9888 467888999999999999998888889888887655433
No 119
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.97 E-value=3.2e-09 Score=97.85 Aligned_cols=110 Identities=11% Similarity=0.216 Sum_probs=88.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.|..-|.+|++|||+..........+ + ...+++++++. +|+|++++|...++
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333221 3 45699999998 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.+..+++|.++|+++....-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7777 6777889999999999999888888888888775444
No 120
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.90 E-value=1.5e-08 Score=99.65 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+... ....+.+++++... +|+|++|+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g-----~~~~~~~~eell~~---~D~Vvi~t 75 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLR-----RPPPVVPLDQLATH---ADIVVEAA 75 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcC-----CCcccCCHHHHhcC---CCEEEECC
Confidence 4457999999999999999999873 67765 88999998877765432 12456789998766 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
|... ..++.... ++.|+.|+..+.......+++.+.+++.|..+ +..+-.++
T Consensus 76 p~~~-h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 76 PASV-LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred CcHH-HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 9874 44444444 34666566666655556778888888888765 54444444
No 121
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.90 E-value=8e-09 Score=102.01 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=112.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.++|++|...|++|++||+.....+.+...+ +.. .+++++++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5899999999999999999999999999997644333332222 333 489999988 99999999986 45
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhh---hcC--C-ccc-c--CCCHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGA---RYG--P-SLM-P--GGSFEAY 152 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a---~~g--~-~i~-~--gg~~~~~ 152 (484)
..++ +++++.+++|.+++-.-.-+. ........+++.. +-+|=..|.... ..| . +++ + --+-.+.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni----~~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~ 160 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNI----HFGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTAL 160 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcce----ecCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHH
Confidence 7777 579999999998776543321 1111223345543 335544443221 122 2 222 1 1122355
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHH-H-HHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKM-I-HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~-v-~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
+.+..+-..+|..- -.++-.. -..=...-+ - +..+-.+..+++--.+..+.+.| .+|+..
T Consensus 161 ~~ala~a~~iG~~r----agv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaG-y~pe~A 222 (335)
T PRK13403 161 HVALAYAKGVGCTR----AGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGG-YRPEIA 222 (335)
T ss_pred HHHHHHHHHcCCCc----eeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 66666667776531 0011000 000000000 0 11233455566666777777787 888753
No 122
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.82 E-value=2.1e-08 Score=107.62 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=91.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 58999999999999999999999999999986322 111111 24455689999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ .+.+..+++|.++|+++....-+...+.+.+.+..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998765543
No 123
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.80 E-value=6.9e-08 Score=94.08 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=110.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|||||.|.||.-+|..|.++||.|.++||+. ...+.+..+ ...++.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 379999999999999999999999999999986 455555433 3457788888875 599999999775 78
Q ss_pred HHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC--ccc----cCCC----HHH
Q 011501 84 DQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP--SLM----PGGS----FEA 151 (484)
Q Consensus 84 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~--~i~----~gg~----~~~ 151 (484)
+.++...-+. ++.|++++|..+..-.......+.+. +.+..+.+ |+.|.......+. .++ -.|+ ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777765 88999999999887555545555544 45666665 6665542332222 222 2343 778
Q ss_pred HHHHHHHHHHHhccC
Q 011501 152 YKHIEDILLKVAAQV 166 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~ 166 (484)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 888888888888764
No 124
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.79 E-value=2.9e-08 Score=106.52 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=90.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+||++... +..... ++... +++++++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 58999999999999999999999999999986432 121211 23444 89999887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+.++ .+.+..+++|.++|+++....-+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 9888 678888999999999999999999999998877544
No 125
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.79 E-value=3.3e-08 Score=99.19 Aligned_cols=109 Identities=13% Similarity=0.235 Sum_probs=90.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++||||+|.+|+.+|..+..-|.+|.+||+...+...... ......++++++++ +|+|++.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 58999999999999999999999999999994333211111 24556789999998 99999999999899
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 9888 567778999999999999998888888888876433
No 126
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.77 E-value=2.9e-08 Score=101.69 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=89.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc--
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS-- 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 81 (484)
++|||||+|.||+.+|+.+...|++|.+||+.....+ . .....++++++++ +|+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5899999999999999999999999999998643211 1 1234589999887 999999999765
Q ss_pred --hHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 --PVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.+...+ ++.+..+++|.++|+++.+..-+...+.+.+.+..+....--|.-
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 356666 567788999999999999999999999888876544333333443
No 127
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.75 E-value=9.2e-07 Score=83.26 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=134.8
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHHhhhcCCCCeeecCCHh
Q 011501 3 QTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKQEGNLPLYGFHDPE 61 (484)
Q Consensus 3 ~~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~~-~~~~~~~~~~~~~~~~s~~ 61 (484)
+|||.|+|.|+. |..||..++++||+|.+.|+|.+-.++- -+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999974 6789999999999999999887644332 2333333 478888888
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHH--Hc--CCe-EEeccCCCCHH
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVA--EL--GLL-YLGMGVSGGEE 135 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~--~~--g~~-~i~~pv~gg~~ 135 (484)
+.++. +++.++-+|-+..+-.+.+.++++++.|.+|.++.|.+|...-. +...++ .+ |+. +..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999899999999999999999999999988765433 223332 22 332 22234444432
Q ss_pred hhhcCCccccC----C----CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 136 GARYGPSLMPG----G----SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 136 ~a~~g~~i~~g----g----~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
+|..++.| | .++-.+++.++.++.|+. .|+-|.---..+-=..-.+....++.+.+-+.+.
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~--------~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKE--------VYVLPADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCc--------eEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33323222 2 467788899999999976 4444422222222222344555667777888877
Q ss_pred HHhCCCCHHHHHHH
Q 011501 208 KSVGKLSNEELQQV 221 (484)
Q Consensus 208 ~~~g~~~~~~i~~~ 221 (484)
++--|.+.+.+.+.
T Consensus 224 ~qIi~AP~eMIekQ 237 (340)
T COG4007 224 TQIIGAPKEMIEKQ 237 (340)
T ss_pred HHHhCCcHHHHHHH
Confidence 75443666655444
No 128
>PLN02928 oxidoreductase family protein
Probab=98.74 E-value=5.6e-08 Score=98.90 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~--------~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++|||||+|.||+.+|+.|...|.+|++|||+........ ..... ......++++++.+ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999843211110 00000 00134578888887 999999
Q ss_pred ecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 76 LVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 76 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
++|....++.++ .+.+..+++|.++|+++.+..-+...+.+.+....+.....-|+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999988888888 57778899999999999998888888888887654443333333
No 129
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.72 E-value=1.2e-07 Score=95.21 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=93.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +..... +++++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 1222221 133444 9999998 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
...+ .+.+..+++|.++|+++.+..-+...+.+.+++..+.-.+.-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 9988 67778899999999999999999999999998765443333333
No 130
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.72 E-value=5.3e-08 Score=86.48 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.+ +. ..+.+|+++. +|+|++.+|+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~- 71 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE- 71 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-
Confidence 36899999999999999999999999999998877 444444433 33 3588888887 99999999986
Q ss_pred hHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
.-.++. +++.|.|++|++++-...
T Consensus 72 ~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 445565 899999999998876554
No 131
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.71 E-value=7.7e-08 Score=99.98 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=91.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++++++. +|+|++++|....+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 589999999999999999999999999999874311 01 13445689999988 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga 261 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGA 261 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEE
Confidence 8888 567788999999999999999999999999887655433
No 132
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.71 E-value=8.4e-08 Score=96.23 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+ ...+++++++. +|+|++++|-...+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999998999999999974321 10 12 23488999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ ++.+..+++|.++|+++.+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 6777889999999999999988999999988775554
No 133
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.67 E-value=2.5e-07 Score=90.74 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=81.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||||||+|.||..++..+.+. +++ +.+||+++++.+.+.+.. +...+.++++++.. +|+|++|+|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCChH
Confidence 6999999999999999999876 355 568999999888776532 24567889998755 99999999875
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC---ChHHHHHHHHHHHHcCCe-EEeccCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE---WYENTERRQKAVAELGLL-YLGMGVSGG 133 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pv~gg 133 (484)
...+.+..++ +.|.-++..|.. .+...+++.+.+++.|.. ++..+..+|
T Consensus 73 -~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g 125 (265)
T PRK13304 73 -AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVG 125 (265)
T ss_pred -HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHh
Confidence 4555554444 345545555542 444556677777777754 444443443
No 134
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.65 E-value=2.8e-07 Score=92.72 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=87.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+||+.... . . . ...+++++++. +|+|++++|-...+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----R-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----c-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 58999999999999999999999999999986421 0 0 1 13478999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 6777889999999999999888888898888875444
No 135
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.65 E-value=1e-07 Score=97.31 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=84.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
++|||||+|.||+.+|+.|...|.+|.+||+.... . .. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----GD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c----cc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 0 10 0124589999887 9999999996643
Q ss_pred ---HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 83 ---VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 83 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+...+ ++.+..+++|.++|+++.+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55666 567788999999999999998888888888876544
No 136
>PRK06141 ornithine cyclodeaminase; Validated
Probab=98.65 E-value=9.5e-08 Score=96.05 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.++.... +..+..+.++++++.+ +|+|+.++|...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 4478999999999999988764321 1125667889888877 999988888763
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. ++.. ..+++|. +|++.++.+...+++...+.+++..|+|.
T Consensus 202 p---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 P---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred C---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 2 3321 4577887 67777777777777777776677778875
No 137
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.64 E-value=2.2e-07 Score=93.52 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=88.2
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++||||+|.+|+.+|+.+. .-|.+|.+||+...... .... ++. ..++++++++ +|+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 58999999999999999997 77889999998753211 1111 123 3489999988 9999999999988
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
++.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5677889999999999999988888899888765443
No 138
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.64 E-value=2.7e-07 Score=92.61 Aligned_cols=105 Identities=10% Similarity=0.155 Sum_probs=87.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... ... ....+++++++. +|+|++++|-...+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~~-----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VCR-----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--ccc-----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999899999999986421 100 123588999888 99999999988888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 6777889999999999999988888898888876554
No 139
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.64 E-value=1.7e-07 Score=92.91 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=80.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||..+|..|...|.+|+++||++++.+.+...+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 589999999999999999999999999999998876655432211 1112234455554 99999999875 11
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. .+....++++.+|||.++..-.+-. +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3455667889999999987533322 45567888877665
No 140
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.56 E-value=1.8e-07 Score=92.21 Aligned_cols=74 Identities=15% Similarity=0.309 Sum_probs=62.7
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 589999996 999999999999999999998653 256677777 9999999999876
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999999664
No 141
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.55 E-value=5.2e-06 Score=80.52 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=110.1
Q ss_pred CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 26 GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 26 G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
-++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+||+ +.++++++.++.+.+.++++||++..
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988876643 24567788888887 999999999 45899999999887777889999888
Q ss_pred CChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcCC-ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCc--
Q 011501 106 EWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYGP-SLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG-- 179 (484)
Q Consensus 106 ~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~-- 179 (484)
..+. ..+.+.+.. +...+ -+|-. +.....|. .+..+. +++..+.++.+|+.+|.- +++.+.
T Consensus 79 gi~~--~~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~E~~~ 145 (245)
T TIGR00112 79 GVTL--EKLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV--------VELPEALM 145 (245)
T ss_pred CCCH--HHHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE--------EEECHHHc
Confidence 7643 334444432 12222 24532 33344666 444442 566678899999999952 444321
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
-....+--...++.+..+..+.++ +.+.| +++++..++..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 111111112233444444444444 34567 99999888764
No 142
>PLN02306 hydroxypyruvate reductase
Probab=98.54 E-value=8.3e-07 Score=91.32 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=92.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHHhhh----cCC--CCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAKQ----EGN--LPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~~~~~~~~----~~~--~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+...... .+. ..+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 58999999999999999986 679999999998642 1211111100 000 001224588999887 999999
Q ss_pred ecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 76 LVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 76 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
++|-...++..+ .+.+..+++|.++|+++.+..-+...+.+.+++..+.....-|+-.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 999888888888 6777889999999999999888888888888775454333344433
No 143
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.52 E-value=2.2e-06 Score=73.22 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=83.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+||||||+|.+|......+.+. +.+| .++|+++++.+.+.+.. ++..++|.+++++. +..|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3899999999999999888877 3454 47899999988876544 36689999999984 2489999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.+.+.+...+.... .++++- -...+.+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 76665544443322 566663 2335678888888888877654
No 144
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.46 E-value=1.1e-06 Score=87.64 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=89.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||+|+|.+|+.+|++|...|..+.-++|++...+...+... . ..+.++++.+ +|+|++++|....+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHHH
Confidence 58999999999999999999999555666787776666554432 1 4588888888 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 120 (484)
..++ .++...+++|.+||+++-+..-+-+.+.+.+++
T Consensus 232 ~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 9999 678889999999999999998888888888765
No 145
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.41 E-value=1e-06 Score=78.63 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=75.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCC----e---eecCCHhHHHhhcCCCcEEEEecC
Q 011501 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP----L---YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~----~---~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|.|+|+|.||.-+|..|.+.|++|.++.|++ ..+.+.+.+..-.... + ....+..+... .+|+||+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777665432100000 0 00111212223 4899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAV 118 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l 118 (484)
.. +++++++.+.+++.+++.|+-..|.. ...+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGM-GNEEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSS-SHHHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCC-CcHHHHHHHc
Confidence 87 78999999999999988888888875 3333444443
No 146
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=98.41 E-value=1.2e-06 Score=86.27 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=82.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc--
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS-- 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 81 (484)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ .... .+..+.. +..+|+||.|+|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQA-FSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceEE-echhhhc--ccCccEEEECCCCCCCC
Confidence 47999999999999999999999999999999998888776542211 1122 2333322 224899999999862
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.++++. -....+.++.+++|++..++.+ .+.+..+++|..+++.
T Consensus 193 ~~~~~~-~~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 193 NIDEPP-VPAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCC-CCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 121110 0123467889999999887654 5777788888877654
No 147
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.41 E-value=1.5e-06 Score=86.55 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++++|||.|.+|..++..|.+.|.+|+++||++++.+.....+. ......++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~-----~~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGL-----SPFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-----eeecHHHHHHHhCC---CCEEEECCChhh-
Confidence 368999999999999999999999999999999887655443321 11112244455554 999999998641
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+-++....++++.+|||.++..-. +. + +..+++|+..+.++
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLAP 263 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEEC
Confidence 224556678899999999887643 32 2 34566788777654
No 148
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.32 E-value=4.3e-06 Score=82.14 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=114.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--C-----CcEEEEeCChh------HHHHHHH-HhhhcCCC--------CeeecCCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVE-RAKQEGNL--------PLYGFHDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~~~~-~~~~~~~~--------~~~~~~s~ 60 (484)
..||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+... .+.+- .| ++.+.+|+
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~-KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENV-KYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccc-cccCCccCCCCeEecchH
Confidence 45899999999999999998864 2 25776644322 2222221 11110 11 57788888
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH-----HHHHHHHHHH-cCC--eEEeccCCC
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN-----TERRQKAVAE-LGL--LYLGMGVSG 132 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-----~~~~~~~l~~-~g~--~~i~~pv~g 132 (484)
.+++.. +|++|..+|.. .+..++++|..+++++...|.++.+.-.. ..-+.+.+.+ .|+ .++..|-..
T Consensus 100 ~ea~~d---ADilvf~vPhQ-f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 100 VEAAKD---ADILVFVVPHQ-FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred HHHhcc---CCEEEEeCChh-hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 888877 99999999996 89999999999999999999887654211 1222333322 233 233333332
Q ss_pred CHHhhhcCC-ccccCC-CHHHHH-HHHHHHHHHh-----------ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHh
Q 011501 133 GEEGARYGP-SLMPGG-SFEAYK-HIEDILLKVA-----------AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQ 198 (484)
Q Consensus 133 g~~~a~~g~-~i~~gg-~~~~~~-~v~~ll~~i~-----------~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~ 198 (484)
.+ -|.+-. ---+|+ ++.... .++.+|+.-- -++.++.|+++.++. |-...+.+..|.-.+.+.+
T Consensus 176 ~E-Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaa-GfvdGL~~g~NTkaAi~r~ 253 (372)
T KOG2711|consen 176 SE-VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAA-GFVDGLGLGNNTKAAIIRL 253 (372)
T ss_pred HH-HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhh-hhhhhccCCcchHHHHHHh
Confidence 22 233333 222333 333333 2555553311 111122344444443 4444455566666666666
Q ss_pred HHHHHHHHHHHh
Q 011501 199 LIAEAYDVLKSV 210 (484)
Q Consensus 199 ~~~Ea~~l~~~~ 210 (484)
.+.|+..+++..
T Consensus 254 Gl~Em~~F~~~f 265 (372)
T KOG2711|consen 254 GLLEMIKFATHF 265 (372)
T ss_pred hHHHHHHHHHHh
Confidence 666666666554
No 149
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.32 E-value=2.7e-05 Score=72.72 Aligned_cols=108 Identities=8% Similarity=0.095 Sum_probs=77.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 48999988 99999999999999998851 12 89999999987 6
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcC---Ccccc--CCCHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYG---PSLMP--GGSFEAYKHIE 156 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g---~~i~~--gg~~~~~~~v~ 156 (484)
+.++++++. .+|+|.++++-.- . +.+..|++. |++| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~----~~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----K----KYSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----H----HhcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999998431 1 124578886 7776 4444433 33333 34667778888
Q ss_pred HHHHHHhcc
Q 011501 157 DILLKVAAQ 165 (484)
Q Consensus 157 ~ll~~i~~~ 165 (484)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8887 555
No 150
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.30 E-value=3.9e-06 Score=84.36 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||+|.||..+++.|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.|+|.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 368999999999999999999866 6899999999988887765421 12222234444444 999999999885
Q ss_pred hHHHHHHHHhhhc-CCCCEEEecCC
Q 011501 82 PVDQTIKTLSVYM-EKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl~~l~~~l-~~g~iiId~st 105 (484)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44444444332 35789999984
No 151
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.29 E-value=2.4e-06 Score=75.05 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|||+|.||+.++..|++.|.+ |+++||+.++.+++.+..... .......++..+.... +|+||.++|.+..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~~ 88 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGMP 88 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTST
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCCc
Confidence 5899999999999999999999987 999999999999988765221 0012334445555555 9999999998854
Q ss_pred HHHHHHHHhhhcCCC-CEEEecCC
Q 011501 83 VDQTIKTLSVYMEKG-DCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g-~iiId~st 105 (484)
.+-++......+. .+++|.+.
T Consensus 89 --~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 --IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --SSTHHHHTTTCHHCSEEEES-S
T ss_pred --ccCHHHHHHHHhhhhceecccc
Confidence 1112222222111 49999973
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=2.1e-06 Score=84.79 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=60.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5899999 99999999999999999999995 553 34455666 999999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.++.++ +++|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998764
No 153
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.28 E-value=1.1e-05 Score=82.27 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=90.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++.+++....... ..... ..+.+.+.+-+++.|+||.|.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 89999999999998887653110 01111 22444444444458999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~ 135 (484)
.. ...+++.. ++.|.-++|+|...+.. .++...+.+.|+.. +++++..|-.
T Consensus 79 ~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 79 FV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 73 33444443 55788999999988765 77777778888755 4567666543
No 154
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.25 E-value=5.2e-06 Score=83.88 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=73.8
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.++.... +..+..+.++++++++ +|+|++|+|+.+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997766654 4568999999999998887654321 1135678899999987 999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
.+-. ...+++|..|...++..|.
T Consensus 205 P~~~-----~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVK-----ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred cEec-----HHHcCCCCEEEecCCCCcc
Confidence 4221 2357899999888877653
No 155
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.18 E-value=1.5e-05 Score=79.60 Aligned_cols=89 Identities=18% Similarity=0.411 Sum_probs=62.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|++.||+|||+|.||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++... +|+|++|+
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~~---iDVViIct 68 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLDD---VDVLILCM 68 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhccC---CCEEEEcC
Confidence 7778999999999999999999876 67766 579985 3322 111 23334455555544 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+..+.+.+ .+.+..|.-+|++..
T Consensus 69 Ps~th~~~~----~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 69 GSATDIPEQ----APYFAQFANTVDSFD 92 (324)
T ss_pred CCccCHHHH----HHHHHcCCCEEECCC
Confidence 998775544 344567777888754
No 156
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.15 E-value=5.4e-06 Score=81.22 Aligned_cols=74 Identities=14% Similarity=0.319 Sum_probs=61.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||++++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 58999999 999999999999999999999321 2366777777 9999999999876
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.. ++++|.+|||+|...
T Consensus 215 v~~~------~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKE------FVKEGAVVIDVGMNR 233 (284)
T ss_pred CCHH------HccCCcEEEEeccee
Confidence 6653 388999999998764
No 157
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.15 E-value=1.4e-05 Score=79.77 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=83.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++||||+|.+|...+..+..- . .+|.+|||++++.++|.++.....+..+..+.++++++.. +|+|+.+++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888763 2 3799999999999998876543212246778999999988 999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|.-.++..|...+--.+.+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 42 21 23577898888888777643322233344333456664
No 158
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.14 E-value=2.7e-05 Score=78.12 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcC---C--CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEG---N--LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~---~--~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.......... . .+++.+.+.++ ++. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 4799999999999999999999876 99999999876544322111000 0 02344455544 344 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+..+. .++++++.+.+.. +..++|..+|..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 73221 2344556666665 456677776644
No 159
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.09 E-value=1.1e-05 Score=69.35 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=62.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
||+||| .|.+|..++..|.++ ++++..+ +++.++.+.+...+.... ... ...+..++. ...+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFE--ELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChh--hcCCCEEEEcCCcH
Confidence 689999 599999999999985 7777655 665444333333221100 010 011112222 12499999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55555555666678999999999875
No 160
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.07 E-value=2.6e-05 Score=78.90 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=81.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..++. .+ .+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998887764 34 3799999999999888765432111124567888888877 999999999874
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. ++. ..+++|..|+..++..|...+.-.+.+......|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 333 4578999999988877644433233333333346665
No 161
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.06 E-value=1.5e-05 Score=77.38 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=69.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||.|..|.+-|+||.++|.+|++--|.... .+.+.+.+ +. +.+++|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999988776555 33333322 33 5689999988 99999999997 4
Q ss_pred HHHHH-HHHhhhcCCCCEEEec
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDG 103 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~ 103 (484)
-.++. +++.|.|++|+.+.-.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEec
Confidence 45566 4999999999866443
No 162
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.06 E-value=5.1e-05 Score=76.98 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGLAVM-GQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGlG~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~ 75 (484)
|+++||||||+|.+ +...+..+.+.+. -|.++|+++++.+.+.++.. + ..++|.+++++. ...|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~I 73 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYI 73 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEE
Confidence 66789999999955 4668888888763 47788999999988887542 3 478899999886 23699999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
++|+..+.+.++..| ..|+ ++++- =+..+.+.+++.+..+++|..+
T Consensus 74 atp~~~H~e~~~~AL----~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 74 ATPNALHAELALAAL----EAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred cCCChhhHHHHHHHH----hcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 999998877765444 3444 44441 1223467777777777776544
No 163
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.05 E-value=3.1e-05 Score=77.79 Aligned_cols=115 Identities=14% Similarity=0.241 Sum_probs=83.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.++...++.+..- --+|.+|||++++.+.|.+..... +..+..+++.++++.. +|+|+.+++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 248999999999999887654322 2346678899999987 999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHH-HHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQ-KAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|+-.++..|.. +++. +.+......|+|.
T Consensus 205 P~---~~--~~~l~~G~hi~~iGs~~p~~-~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 205 PL---LQ--AEDIQPGTHITAVGADSPGK-QELDAELVARADKILVDS 246 (315)
T ss_pred ce---eC--HHHcCCCcEEEecCCCCccc-ccCCHHHHhhCCEEEECC
Confidence 42 21 14578999998888877633 3333 3333333456665
No 164
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.03 E-value=3.4e-05 Score=77.24 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=80.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..+.. .+ .+|.+|||++++.+.+.++.... +..+. +.+.++++.+ +|+|+.|+|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-~~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-GPTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-CCeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 45 47999999999999988765421 11122 5788888877 999999999885
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ +.. .+++|..|+..++..|..-+--.+.+... -.|+|.
T Consensus 201 Pl---~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 201 PV---YPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred ce---eCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 43 322 46899999988887764332222233332 346665
No 165
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.01 E-value=3e-05 Score=82.39 Aligned_cols=106 Identities=14% Similarity=0.252 Sum_probs=75.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++++|+|+|.+|.+++..|++.|++|+++||++++.+.+.+.... .. .+.+++ ..+..+|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~~-~~~~~~-~~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------KA-FPLESL-PELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------ce-echhHh-cccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999988877654211 11 122222 123449999999999864
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+... +. .+++|+...++.+. +.+.++++|...++
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 3321 11 38999998765544 56677778876554
No 166
>PLN00203 glutamyl-tRNA reductase
Probab=98.01 E-value=3e-05 Score=82.69 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..+|+|||+|.||..++.+|...|. +|+++||++++.+.+.+..... ...+....+..+.+.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3689999999999999999999997 6999999999998887653210 0011223445555555 999999997765
Q ss_pred h
Q 011501 82 P 82 (484)
Q Consensus 82 ~ 82 (484)
.
T Consensus 342 p 342 (519)
T PLN00203 342 P 342 (519)
T ss_pred C
Confidence 4
No 167
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.00 E-value=7.7e-05 Score=69.49 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=76.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||+||+|.+|..+...+.+. ++ .|.+|||+.++..++.+... ...+++++|++.. +|+++.|-...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~~ 71 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASPE 71 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCHH
Confidence 4799999999999999877643 24 57899999999988776442 3456889998866 99999997554
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE--EeccCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY--LGMGVSGG 133 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~--i~~pv~gg 133 (484)
++++...+++.. ..+-+|+..+...-+...++...+.+.+... +..+-.||
T Consensus 72 -Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 72 -AVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred -HHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchh
Confidence 666655444432 1223445555444344444444455554433 33444444
No 168
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.99 E-value=5.3e-05 Score=75.89 Aligned_cols=99 Identities=13% Similarity=0.194 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHH----HHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~----~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+... +...... ..+++.+.+.++ ++. +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 8999999876543111 1111000 013555677776 444 99999999
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.+. .++++++++.++. ++.+||..||-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 8432 2334445666664 566777777754
No 169
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.99 E-value=7.6e-05 Score=71.40 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-hhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 80 (484)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++.+. .... -+....+-.+++++ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999998885542 1100 13334444455443 45799999999887
Q ss_pred chHHHHHHHHhhh-cCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVY-MEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~-l~~g~iiId~st~ 106 (484)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 666666655543 4455566555544
No 170
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.94 E-value=6.7e-05 Score=75.29 Aligned_cols=118 Identities=13% Similarity=0.182 Sum_probs=87.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..++|||+|.++......+..- .-+|.+|+|+++..+++.....+.++..+..+.|.+++++. +|+|+.|+|+.+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34899999999999998866544322236788999999998 999999999885
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ++ ...++++|..|.-.++-.|...+--.+.+...+..|+|.+
T Consensus 208 P---il--~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VL--KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---ee--cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3 22 1246789998888887765544333444444456777765
No 171
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.92 E-value=5.8e-05 Score=67.61 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++.|+|.|..|+++|+.|...|-+|++++++|-+.-++...+ +.. .+.++++.. +|++|.++.....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 5799999999999999999999999999999997654444332 343 367888776 99999998765322
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. .+..+.+++|.++.+.+....+
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTTS
T ss_pred C---HHHHHHhcCCeEEeccCcCcee
Confidence 2 2344568899999998877543
No 172
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.92 E-value=5.5e-05 Score=76.56 Aligned_cols=97 Identities=10% Similarity=0.235 Sum_probs=72.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..|+. .+. +|.+|||++++.+++.++.....+..+..++++++.+.. +|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 479999999999999999973 564 699999999999988776432101134557788888876 999999998864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
. ++. ...+++|..|...+...|
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCCC
Confidence 3 221 134678888887775543
No 173
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.89 E-value=7.4e-05 Score=64.58 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=70.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCcE-EEEeCChhH-----HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE-KGFPI-SVYNRTTSK-----VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~-~G~~V-~v~dr~~~~-----~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|||+|+|+ |.||+.++..+.+ .++++ .+++++++. +.++.... ..++...++++++.+. +|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 48999999 9999999999998 67774 567888721 11111111 1146677899999888 999988
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.. .++.+.+.++.... .|.-+|-++|.....-.+..+.+.++ +..+-+|
T Consensus 74 fT-~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FT-NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES--HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cC-ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 87 33355555544443 47778888888754444444454444 4444443
No 174
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.89 E-value=8.1e-05 Score=75.46 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=70.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.++..+..+..+..+.++++++.. +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999998876532111134557788888877 999999998864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ++.. ..+++|..|...++..
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 2221 2356787777665544
No 175
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.89 E-value=0.00012 Score=83.62 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l 67 (484)
+++|+|||+|.||...+..|++.. ++ |++.|++++..+++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 458999999999999999999753 33 999999999888776643110 01333 56778877655
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 68 QKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+|+||+|+|..-+. .++.. .+..|.-+++.+ .....+.++.+.+++.|+.++.
T Consensus 647 ~~~DaVIsalP~~~H~-~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPASCHA-VVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCchhhH-HHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 6699999999997543 33333 344677778877 4446777788888888887654
No 176
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.89 E-value=2.5e-05 Score=80.39 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=91.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++|+|||+|.+|.+.|.+|...|++|++--|. .+.-+.+.+.+ +. ..+++|+++. +|+|++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999954433 33333333322 33 3578888887 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhh---hc--CC-c-cccC---
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGA---RY--GP-S-LMPG--- 146 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a---~~--g~-~-i~~g--- 146 (484)
|+. .-..+.+++.+.+++|.++.-.-.-... .......+++..+ -+|=..|.... .. |. + +.+-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fsHGFni~----~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYSHGFNIV----EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEecCCceee----eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 998 4556668999999999887544332211 0111123344433 35654443322 22 32 2 2222
Q ss_pred -CCHHHHHHHHHHHHHHhcc
Q 011501 147 -GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 147 -g~~~~~~~v~~ll~~i~~~ 165 (484)
-+..+.+.+..+-.++|..
T Consensus 181 D~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCCchHHHHHHHHHHHhCCC
Confidence 1334667777777777753
No 177
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.88 E-value=5e-05 Score=75.85 Aligned_cols=110 Identities=40% Similarity=0.700 Sum_probs=96.3
Q ss_pred eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhhhhhccccccccCCCCchh
Q 011501 176 VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLSNEELQQVFSEWNKGE-LLSFLIEITADIFGIKDDKGDGYL 253 (484)
Q Consensus 176 ~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 253 (484)
.|. |+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++...+++.+++ .
T Consensus 164 ~G~---~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGS---GHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 366 689999999999999999999999999985 3799999877 78876 69999999999987542 3
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCc
Q 011501 254 VDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLK 297 (484)
Q Consensus 254 l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~ 297 (484)
++.+.+.+.++++++|++.+|.+.|+|+|+++++++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 55677777789999999999999999999999999999999876
No 178
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.86 E-value=5.7e-05 Score=78.99 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......+..+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 6899999999988777664321 11222344455555 9999999987654
No 179
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.85 E-value=6.3e-05 Score=78.60 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=69.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.+|..+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5899999999999999999999999999999987654433322 22 2467888776 9999999743
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~ 107 (484)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3344 35667789999999998874
No 180
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.85 E-value=6.7e-05 Score=77.18 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=67.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEecCCC-c
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLVKAG-S 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~vp~~-~ 81 (484)
.+|.|||+|.+|...+..+...|.+|.++|+++++.+.+...... .+. ...+.+++.+.+..+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 479999999999999999999999999999999887776554321 011 1233444444445599999998431 1
Q ss_pred hHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 455566788999999774
No 181
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.82 E-value=0.00018 Score=74.36 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +.. .+.+++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCCH---
Confidence 5899999999999999999999999999999997754444322 332 356777665 99999887543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCCCh-HHHHHHHHHH
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNEWY-ENTERRQKAV 118 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~l 118 (484)
.+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 3443 46677889999999988754 3444444433
No 182
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.81 E-value=5.8e-05 Score=79.13 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|+|||+|.||..++..|...|. +|+++||++++...+.+.... .+....+..+.+. .+|+||.|++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 589999999999999999999997 799999999998877765321 1222233444444 49999999987754
Q ss_pred HH--HHHHHHhh-hcCCCCEEEecCC
Q 011501 83 VD--QTIKTLSV-YMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~--~vl~~l~~-~l~~g~iiId~st 105 (484)
+. +.++.... .-..+.++||.+.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 32 22222111 1123467888863
No 183
>PRK06046 alanine dehydrogenase; Validated
Probab=97.81 E-value=0.00012 Score=74.16 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|||||+|.+|...+..+... + ..|.+|||++++.+++.++.....+..+..+.+.+++++ +|+|++|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999998853 3 378899999999988887543210112456778888774 899999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|...++..|.. .++...+-.+.-.|+|.
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p~~-~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAPGK-QELDPEILLRAKVVVDD 246 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCCcc-ccCCHHHHhCCcEEECC
Confidence 32 21 13568899988888776533 23333222223346664
No 184
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.81 E-value=0.00018 Score=70.56 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+||||||+|.||..++..+.+. +.++. ++++.... +...+.... ++..+++++++ . .++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~-~~~~~~~~~----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSI-DAVRRALGE----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCH-HHHhhhhcc----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 36999999999999999999876 45543 44543221 111111110 24667888887 3 3499999999886
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC---ChHHHHHHHHHHHHcCCe-EEeccCCCCHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE---WYENTERRQKAVAELGLL-YLGMGVSGGEE 135 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pv~gg~~ 135 (484)
...+..... +..|.-++..++. .+....++.+..++.|.. |+..+..|+-.
T Consensus 73 -~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 73 -ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred -HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 334443333 4456555555553 233345566666666754 45555555543
No 185
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.81 E-value=6.5e-05 Score=74.30 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=76.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|+|.+|.+++..|+..| .+|+++||+.++.+.+.+...... .+....+..+.+. .+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCCC
Confidence 47999999999999999999999 689999999999888876543110 0111112223333 49999999998742
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
-..-. .--...++++.+++|..-.+ ..| .+.+..+++|...++
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcCeecC
Confidence 10000 00113467789999997643 444 455666777765543
No 186
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.80 E-value=9e-05 Score=74.52 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|..|...+..+.. .+ -+|.+|+|++++.++|.+..... +..+..+.++++++.. +|+|+.|+|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888775 33 38999999999999998876541 3357889999999988 999999999876
Q ss_pred --hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 --PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 --~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
.+ ++ ..++++|..|+..++..|.
T Consensus 205 ~~P~---~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PAPV---FD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EEES---B---GGGS-TT-EEEE-S-SSTT
T ss_pred CCcc---cc--HHHcCCCcEEEEecCCCCc
Confidence 32 21 2468899999888887664
No 187
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=97.77 E-value=0.00029 Score=71.06 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=62.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDE--T--VERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--~--~~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..++..+.+.+++ +. +|+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CCEEEECC
Confidence 589999999999999999999996 89999999985421 1 11100000 0135545666543 44 99999977
Q ss_pred CCC----c----------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAG----S----------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-.+ . .+.++++.+.++. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 321 1 1233345555555 444777777644
No 188
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=97.75 E-value=0.0001 Score=77.24 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=54.3
Q ss_pred CeEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHHhhhc----C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKQE----G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+......... + ..++..+++.++.++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998766 34 456789999999998876654322110 0 1146667788888777 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
No 189
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.74 E-value=0.00028 Score=65.82 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=67.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+......+..+.. ..+.+++.+.+.++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 999999999999999999999999998887765432100001222 234444334344599999999988
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
... .........++.+++|..-..
T Consensus 109 ~~~---~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VEL---LEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred cee---chhhhcccCceeEEEEccCCC
Confidence 531 111122344578899986554
No 190
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.74 E-value=0.00023 Score=72.31 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|..+...++.+.. .-.+|.+|+|++++.+++.++.... +..+..+.+++++++. +|+|+.++|...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 479999999999888776664 2348999999999999888765432 2246778899999998 999999997643
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. ..+++. .++++|..|.-.++..|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCCC
Confidence 1 122221 457899988877776653
No 191
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.72 E-value=0.00019 Score=72.01 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=49.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCC--Cee-ecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNL--PLY-GFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~--~~~-~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++. +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 48999999999999999999999 58999999988765322111110000 011 1234433 343 999999998
Q ss_pred CC
Q 011501 79 AG 80 (484)
Q Consensus 79 ~~ 80 (484)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
No 192
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=97.72 E-value=0.00041 Score=58.80 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=69.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCchH
Q 011501 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~v 83 (484)
|-|+|.|.+|..++..|.+.+.+|.+.|++++.++.+.+.+... +.+..+-.+..+ .+++++.++++++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999888765321 222222233333 345699999999876433
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..++..+....+...+++-..+. ...+.+...|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33333333333334555544432 22444555666554
No 193
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.72 E-value=0.00015 Score=71.90 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|.|||+|.+|.+++..|+..|. +|+++||+.++.+.+.+...... ...+....+..+.+. .+|+||.++|.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 79999999999988876542110 001112233333333 4999999998762
Q ss_pred hHHHHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.-..-. .+ ...+.++.+++|..-.+. .| .+.+..+++|...++
T Consensus 205 ~~~~~~-~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGL-PLPAELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC-CCCHHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 111000 01 124677889999876553 33 455666777776544
No 194
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.71 E-value=0.00034 Score=67.69 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=74.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG---FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+... ...+.++++++.. ++|+|+.|-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCCH
Confidence 59999999999999999987542 44 45688988887776542 4578899997432 39999999765
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChH--HHH-HHHHHHHHcC-CeEEeccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYE--NTE-RRQKAVAELG-LLYLGMGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~~~-~~~~~l~~~g-~~~i~~pv~gg~~ 135 (484)
. ++++....++ ..|.-++-.|.+-.. ... ++.+..++.| -.|+..+-.||-.
T Consensus 73 ~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 73 Q-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 4 5665555544 445444444443322 222 3333334433 3456666555543
No 195
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.70 E-value=0.00041 Score=68.09 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=69.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|+| +|.||..+++.+.+ .++++. ++||+ ++... .+....... ..++..+++++++.. .+|+||.++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 5999999 69999999999986 467654 57854 32211 111110000 013556788888733 3899999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEe-cCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIID-GGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+. ...+.+.. .+..|.-+|. ++...+....++.+..++.|+.++-+|
T Consensus 78 p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 78 PE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred hH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 75 44444433 3445544444 444444455555555556566555544
No 196
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.70 E-value=0.00043 Score=68.55 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||+|-+|++++..|++.|. +|+++||++++.+.+.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999988876542210 122222223332333459999999998754
Q ss_pred HHHH-HHHHh-----hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 83 VDQT-IKTLS-----VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 83 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+.. +.... ..+.++.+++|.--.+ ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 3321 11111 1234677899987543 333 34455566676544
No 197
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=97.68 E-value=0.00024 Score=71.00 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=60.9
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHH----HHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~----~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... ....... ..+++.+.+.++ ++. ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998877 9999999987643221 1110000 013444455544 344 9999998843
Q ss_pred Cc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .++++++.+.+.. +..++|..||-.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445666655 455666666543
No 198
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.68 E-value=0.00024 Score=73.90 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 5799999999999999999999999999999988765443322 23 2367777765 99999987543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~~~ 108 (484)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 3443 56677889999999987754
No 199
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.68 E-value=0.00031 Score=68.65 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||+|+|+ |.||..++..+.+. ++++. ++|+++++.... . .+++..+++++++++. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~------~~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G------ALGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C------CCCccccCCHHHhccC---CCEEEECCCH
Confidence 369999998 99999999988864 67655 589988765443 1 1135567788888764 9999988866
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ...+++... ++.|.-++..+|. .+....++.+ +. +++..+-+|
T Consensus 71 ~-~~~~~~~~a---l~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 71 E-ATLENLEFA---LEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H-HHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 5 334444333 4455555544444 4444444444 33 444444444
No 200
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.67 E-value=0.00025 Score=72.97 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=56.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++.|||+|.||.-.|++|+++| ..|++.||+.+++.++.++... . ..+++++...+..+|+||+++..+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~------~-~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA------E-AVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC------e-eecHHHHHHhhhhCCEEEEecCCCc
Confidence 57999999999999999999999 5899999999999998876531 1 2345555555555999999986654
No 201
>PRK11579 putative oxidoreductase; Provisional
Probab=97.66 E-value=0.0006 Score=69.56 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=74.5
Q ss_pred CC-CCeEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MV-QTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+ +.||||||+|.+|.. .+..+.+. +.++. ++|+++++.. +... ....+++++++++. .+.|+|++|
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~ 71 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIP 71 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEc
Confidence 54 369999999999984 56666553 56664 7899987643 1111 24567899999864 347999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+|+..+.+.++..+ +.|+ ++++- -.....+..++.+..++.|+.+
T Consensus 72 tp~~~H~~~~~~al----~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 72 TPNDTHFPLAKAAL----EAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CCcHHHHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 99987766655443 3444 44442 1223466777777777777654
No 202
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.64 E-value=0.0005 Score=68.97 Aligned_cols=98 Identities=9% Similarity=0.144 Sum_probs=63.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcC---CCCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEG---NLPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|.++|..|+..| ++|.++|+++++.+.+........ ...... ..+.++ +.. +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 38999999999999999999999 589999999988766554321100 001112 234443 344 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..+. .++++.+.+..+- +..+||..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6541 1233345555544 45567777753
No 203
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.64 E-value=0.00035 Score=61.79 Aligned_cols=99 Identities=16% Similarity=0.264 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC-CC--CeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG-NL--PLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~-~~--~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......... .. +........+.++. +|+||++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 59999999 9999999999998875 79999999876554432211100 00 12222233333444 99999987
Q ss_pred CCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
-.+ .. ++++.+.+..+- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334555554 55566666654
No 204
>PLN02494 adenosylhomocysteinase
Probab=97.64 E-value=0.00033 Score=73.16 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|+|+|.+|..+|+.+...|.+|+++++++.+.......+ +.. .+.++++.. +|+||.+......+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~~vI 323 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNKDII 323 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCccch
Confidence 5799999999999999999999999999999987654443322 222 367777776 99999876543221
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~ 106 (484)
....+..+++|.++++.+..
T Consensus 324 ---~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 324 ---MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---HHHHHhcCCCCCEEEEcCCC
Confidence 24566778999999999884
No 205
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.63 E-value=0.00012 Score=62.82 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHHhhhcCCC-CeeecC-CHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGF-P-ISVYNRTTSKVDETVERAKQEGNL-PLYGFH-DPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~~~~~~~~~~~~-~~~~~~-s~~e~~~~l~~advIi~~vp~ 79 (484)
||+||| .|.+|..+.+.|.++-+ + +.++.++.+.-..+........+. .+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 799999 99999999999999643 4 556777763333333321100000 122222 33444 44 9999999988
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 6 445555554 45788999999876
No 206
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=97.62 E-value=0.00041 Score=61.32 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=76.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+..- ....+..-.....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999875443333321100 00000011122233333322 4566656554321
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
... ....+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445677999999887 4556667788888899999998776
No 207
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.61 E-value=0.00062 Score=68.66 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---HhhhcCC--CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVE---RAKQEGN--LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~---~~~~~~~--~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.||..+|..++..| .++.+||+++++.+...- ......+ .+++...+++++ +. +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999988 689999999876432111 0100000 023444566643 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 V--KAG-------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. |.. ..+.++.+.+.++. +..++|..||..
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 8 322 12445556666654 566677776644
No 208
>PRK04148 hypothetical protein; Provisional
Probab=97.57 E-value=0.00056 Score=59.47 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=72.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|.+||+| .|..+|..|++.|++|++.|.+++.++.+.+.+...- .-..++..-++-+. +|+|..+=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v--~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAF--VDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEE--ECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 9999999999999999999999999887766542100 00112233355565 99999998887 56
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
..-+-.++..+...-+|...|+..|
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 6666677777766667777777654
No 209
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=97.57 E-value=0.0008 Score=73.22 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=76.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~ 82 (484)
+|-|+|+|.+|+.+++.|.++|++|.+.|.|+++++++.+.+.. -+....+.+++.+ .++++|.++++++++..
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 58899999999999999999999999999999999888764321 1223333344443 34579999999988755
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++..+....+.-.++.-. + .+ +..+.+++.|+.++-.|
T Consensus 495 ~~~iv~~~~~~~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 495 AGEIVASAREKRPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHCCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 444444444433222344333 2 22 23334556788777655
No 210
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=97.56 E-value=0.0011 Score=67.29 Aligned_cols=110 Identities=12% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
..||||||+ .||...+..+.+.. ++ |.++|+++++.+++.++. ++..+++.+++++. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 358999999 68999999998754 55 457899999998888754 35578899999876 7888888754
Q ss_pred ----CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 ----GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+-+.. .++.|.-|+---.....+++++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a~~----aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALARA----LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHHHH----HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344443332 3445655554333346788888888888888765
No 211
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.56 E-value=0.00017 Score=61.55 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=72.4
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+||| -+.+|.-+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3799999 789999999999999999999987753321 36778898884344 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. .+.++++++... ..+.+|+..++ ..+++.+.+++.|+.+++.
T Consensus 66 ~-~~~~~v~~~~~~-g~~~v~~~~g~----~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 D-KVPEIVDEAAAL-GVKAVWLQPGA----ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp H-HHHHHHHHHHHH-T-SEEEE-TTS------HHHHHHHHHTT-EEEES
T ss_pred H-HHHHHHHHHHHc-CCCEEEEEcch----HHHHHHHHHHHcCCEEEeC
Confidence 6 788888887764 45677777773 4456667777889988864
No 212
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.55 E-value=0.00049 Score=64.27 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=110.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+.+|+||.|..|......-...++... +-.|++++.+.+.+. ....+.++.+..+..+++|.-+|+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~----------~~a~p~d~~~~ael~~~vfv~vpd~-~ 79 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAET----------YVAPPLDVAKSAELLLLVFVDVPDA-L 79 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhc----------cCCCccchhhChhhhceEEecchHH-H
Confidence 579999999999996554444444443 336787777665432 2234444444433367888888775 3
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE---Eec-cCCCCHHhhh--cCCccc-cCCCHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY---LGM-GVSGGEEGAR--YGPSLM-PGGSFEAYKHI 155 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~---i~~-pv~gg~~~a~--~g~~i~-~gg~~~~~~~v 155 (484)
+..+.... .-.+|+++++||...-. .+.+.+.+.|..- ... -.+|.++... .++.|. ..+|.--+..+
T Consensus 80 ~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~ 154 (289)
T COG5495 80 YSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIV 154 (289)
T ss_pred HHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHH
Confidence 33333222 24589999999987633 3444455544322 221 2455555544 233332 25676677778
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 156 EDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 156 ~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
+.+...||.+. +-+ .++.--.-....|--..-...++.|+..+.+..| .|.-+
T Consensus 155 q~la~emgg~~-------f~V-~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 155 QSLALEMGGEP-------FCV-REEARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHhCCCc-------eee-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 88888888763 222 2233323333333333345677889999999998 87443
No 213
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.55 E-value=0.00098 Score=63.48 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=111.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+|||||.|.|...++..+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 479999999999999999999985 55666553222222 3322 24444455777776 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCCccccCC---CHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGPSLMPGG---SFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~ 154 (484)
+. .+..++.++.+.+..+++|+.+--...-.+ +.+.+. ...+++- +| -.+....+|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 75 788888888887788999998766543222 223332 1122332 12 1233445565444333 3455578
Q ss_pred HHHHHHHHhccCCCCCCceE-EeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCHHHHHHH
Q 011501 155 IEDILLKVAAQVPDSGPCVT-YVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLSNEELQQV 221 (484)
Q Consensus 155 v~~ll~~i~~~~~~~~~~~~-~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~ 221 (484)
++.+|..+|.-..=.++|+- +.|-.|+|-. | .-.+.|++.= .-+.| ++.+...++
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA---------y--~f~~ieaLadGgVkmG-lPr~lA~~l 201 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA---------Y--VFVAIEALADGGVKMG-LPRQLAYRL 201 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH---------H--HHHHHHHHhccccccC-CCHHHHHHH
Confidence 88999998852211223332 2233455543 1 1222344321 23455 888776665
No 214
>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....
Probab=97.54 E-value=0.00079 Score=55.29 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 259 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~ 259 (484)
-+++++|++.|.+.+..+++++|...+|++.| +|..++.+.+. .. .+. ....+..+..+++.++.+.+.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d---~ri---~~~~~~pg~g~GG~ClpkD~~- 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TD---PRI---GPHYLRPGPGFGGSCLPKDPY- 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TS---TTT---TSSS-S-SSS--SSCHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cC---ccc---ccccCCCCCCCCCcchhhhHH-
Confidence 36899999999999999999999999999999 99999988873 21 111 122333333455555554432
Q ss_pred hcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 260 KTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 260 ~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.....+.++|.+.+++.++
T Consensus 71 ---------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 71 ---------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp ---------HHHHHHHHTTSHHHHHHHH
T ss_pred ---------HHHHHHHHcCCCHHHHHHH
Confidence 4567899999998877654
No 215
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.54 E-value=0.0011 Score=68.61 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=76.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++.+|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999988887531100 1211 23444444444559999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~ 135 (484)
. .-..+++... ..|.-+||.+. ......++.+..+++|+.++. ++...|..
T Consensus 78 ~-~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 6 4455554443 45778899333 234555566667777876654 56665543
No 216
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.52 E-value=0.00034 Score=63.67 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=56.5
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|.| |..+|.+|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~i 100 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPGL 100 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCce
Confidence 58999999997 88899999999999999998742 22234455 9999999988742
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .+ .++++.+|||.+...
T Consensus 101 i~---~~---~~~~~~viIDla~pr 119 (168)
T cd01080 101 VK---GD---MVKPGAVVIDVGINR 119 (168)
T ss_pred ec---HH---HccCCeEEEEccCCC
Confidence 11 12 356788999998653
No 217
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.50 E-value=0.0013 Score=72.24 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=78.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+.+.+.+ -+.+..+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 468899999999999999999999999999999999988765432 1223334444553 4567999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
....++..+....+.-.+++-+.+ . +....+.+.|+..+..+..
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d--~----~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKPERETF 520 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEEehhhH
Confidence 554444444433322244443322 1 2345566678877754433
No 218
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.50 E-value=0.00056 Score=70.94 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=68.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998876655433 222 245566655 99999987543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCC
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~ 106 (484)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 2343 446778899999998854
No 219
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00061 Score=67.11 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+.+||+|+|.+|+.+|.++..-|..|..||.-... +...+. +++ ..+.+|+... +|+|-+-+|-..++
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 57999999999999999999999999999754321 122222 233 3488888887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 120 (484)
+.++ +.....+++|-.||+++.+..-+...+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 456667899999999999988888888777654
No 220
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.48 E-value=0.0011 Score=65.80 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHH-HHHHHhhhcCCCCeee-cCCHhHHHhh--cCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVD-ETVERAKQEGNLPLYG-FHDPESFVHS--IQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~-~~~~~~~~~~~~~~~~-~~s~~e~~~~--l~~advIi 74 (484)
|.+.||||||+|.+|..+...+.+. +.++ .++|+++++.. ...++. ++.. +.+.+++++. ++..|+||
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf 75 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVF 75 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEE
Confidence 3467899999999999988888764 4555 46799886432 222221 2333 4678888863 34589999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.++|...+.+ .... ..+.|..+||.+...
T Consensus 76 ~AT~a~~H~e-~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 76 DATSAGAHVR-HAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred ECCCHHHHHH-HHHH---HHHcCCeEEECCccc
Confidence 9998864322 2222 345788999988764
No 221
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.46 E-value=0.00069 Score=69.81 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=70.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHHhhhcC-CC-CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--G-FPISVYNRTTSKVDETVERAKQEG-NL-PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~~~~~~~~~~-~~-~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+++|||+|.++......++.- . -+|.+|||++++.+.|.++..... +. .+..+.++++++.. +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999888762 2 389999999999998887654320 11 26778999999988 999999997
Q ss_pred CCch---HHHHHHHHhhhcCCCCEEEecCC
Q 011501 79 AGSP---VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 79 ~~~~---v~~vl~~l~~~l~~g~iiId~st 105 (484)
.... ...+++ ..++++|..|+..+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112221 235778887765443
No 222
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.44 E-value=0.0012 Score=72.29 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=76.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 468999999999999999999999999999999999988765422 1223334444444 3467999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
....++..+....+.-.+++-+.+. ...+.+.+.|...+-
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~~------~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARGR------VEAHELLQAGVTQFS 516 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCH------HHHHHHHhCCCCEEE
Confidence 5555555544433333444433321 334455666776553
No 223
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.42 E-value=0.00032 Score=73.10 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=55.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .+...++..+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 589999999999999999999996 7999999999988887753210 1222333344444 49999999988743
No 224
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.42 E-value=0.0022 Score=64.38 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC----CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG----NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~----~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......... ...+..+.+++++ +. +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998875 79999998876544332211110 0024445677764 44 9999997
Q ss_pred cCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 6432 11 22333455555 456677777753
No 225
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.41 E-value=0.0025 Score=63.37 Aligned_cols=118 Identities=11% Similarity=0.164 Sum_probs=87.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh---CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAE---KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~---~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
-|+||+|+|.|+.-+++.|.- .+|.| .++||+.+++.+|.+...-. +.+.+.+.+|+++. ...|+|.+..|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEEeCCCC
Confidence 389999999999999998874 35654 57799999999998765311 35788999999987 335999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+++.+-++..+.. ...++++. -.......+++.+.++++|+.|.++
T Consensus 83 ~qH~evv~l~l~~---~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 83 PQHYEVVMLALNK---GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred ccHHHHHHHHHHc---CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9776655433322 22355552 2234567888888899999888775
No 226
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.41 E-value=0.0013 Score=64.37 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=65.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHHhhhcC----CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 6 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKQEG----NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~~~~~~~~~~----~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+|||+ |.||..+|..|+..| .+|.+||+++++++.......... ..+++.++++.+.++. +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999988 799999999877555433221100 0135556666666666 9999996
Q ss_pred cCCC---------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAG---------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.-.+ ..++++.+.+..+. +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 6321 12334445555554 666777776543
No 227
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.35 E-value=0.0017 Score=68.69 Aligned_cols=97 Identities=12% Similarity=0.224 Sum_probs=63.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhh-cCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHS-IQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~-l~~advIi~~vp~~~ 81 (484)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+..... -+.+. .+...+-+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4899999999999999999999999999999999988876522100 01111 122222222 45699999999886
Q ss_pred hHHHHHHHHhhhc-CCCCEEEecC
Q 011501 82 PVDQTIKTLSVYM-EKGDCIIDGG 104 (484)
Q Consensus 82 ~v~~vl~~l~~~l-~~g~iiId~s 104 (484)
.....+......+ +...+|+...
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4444343333333 3445555543
No 228
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.35 E-value=0.0019 Score=61.89 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCCCC-eeecCCHhHHHhhcCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGNLP-LYGFHDPESFVHSIQKP 70 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~l~~a 70 (484)
.++|+|.|+|.+|..+++.|.+.|.+|+ +.|. +.+.+.+..+....-.++. ... -+.+++... .+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~-~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAER-ITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCcee-cCCccceee--cc
Confidence 4689999999999999999999999988 6677 6555555443321100000 011 133444432 48
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+++-|.+.+.-..+.+..+. =++|+...|... +.+..+.|.++|+.|+.-
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 999999987754445544442 367888888764 366778889999988754
No 229
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.33 E-value=0.00073 Score=68.87 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+||+|||+ |.+|..+++.|.++ ++++. ++++. +..+.+.+............+.+.++. ....+|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 369999996 99999999999987 56764 45543 222222221110000000012233332 12349999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+. ..+++..+. ..|..|||.|+...
T Consensus 79 ~~-~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 GV-SMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred HH-HHHHHHHHH---hCCCEEEECCcccC
Confidence 74 344444443 46899999998763
No 230
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.29 E-value=0.0026 Score=60.44 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh----------hHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKQEGNLPLYG--FHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~ 69 (484)
.++|.|.|+|++|..+|+.|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + .
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 4689999999999999999999988 566789887 6555444332111 0100 112234433 2 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+|+++-|.+.+.-..+.... + +=++|+...|.... .+..+.|.++|+.|+.-
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPD 149 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEECh
Confidence 99999999877433333333 3 24677777776532 36677889999887754
No 231
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.28 E-value=0.0039 Score=62.76 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=49.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCC--CCeeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGN--LPLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~--~~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||+|.+|..+|..|+..|. ++.++|++.++++........... .+.... .+.++ ++. +|+||++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEecC
Confidence 589999999999999999999987 799999998876544432221100 012222 33444 344 999999764
Q ss_pred C
Q 011501 79 A 79 (484)
Q Consensus 79 ~ 79 (484)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 3
No 232
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.27 E-value=0.0027 Score=64.68 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCC----------hhHHHHHHHHhhhcCCC-CeeecCCHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRT----------TSKVDETVERAKQEGNL-PLYGFHDPE 61 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~----------~~~~~~~~~~~~~~~~~-~~~~~~s~~ 61 (484)
.+|+|+|+|.||..++..|.++ | .+ |.++|++ .+....+.+.......+ ......+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998865 3 44 3466853 33333333221100000 001234778
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEE-eccCCCCH
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYL-GMGVSGGE 134 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pv~gg~ 134 (484)
+++.. ..+|+|+.|+|+..+..+. .+-+...+..|.-||..+..... ...++.+..++.|..|. .+.+.+|-
T Consensus 83 ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 83 EVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 88754 2489999999975432222 23334556678777765432211 23455555666777664 45555443
No 233
>PRK10206 putative oxidoreductase; Provisional
Probab=97.27 E-value=0.0028 Score=64.62 Aligned_cols=113 Identities=9% Similarity=0.133 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHH-HHHHHHHh--CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQ-NLALNIAE--KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~-~lA~~L~~--~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.||||||+|.++. ..+..+.. .+++| .++|+++++. ++.+... .+..+++.+++++. ...|+|++|+|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 33454433 35666 4789997654 4443221 24567899999874 348999999999
Q ss_pred CchHHHHHHHHhhhcCCC-CEEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKG-DCIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..+.+.++..+. .| .++++. -.....+.+++.+..+++|+.+..
T Consensus 75 ~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 75 DSHFEYAKRALE----AGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred hHHHHHHHHHHH----cCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 877666554443 34 456652 122346777888887787776543
No 234
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.27 E-value=0.0029 Score=63.25 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCC----CCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGN----LPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~----~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|||+|.+|.++|..|+..| .++.++|+++++++........... ..+....+.+ .++. +|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999988 5899999999877665543221100 0122234443 3333 9999999865
Q ss_pred Cc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. .++++.+.+..+- +..++|..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1333334555554 56667777753
No 235
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.26 E-value=0.0011 Score=69.45 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=75.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
|++.+|||+|+|.||..++..|.++ | .+ +.++|+++++.+.+.. . ....+++++++++. ..
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~-~------~~~~~~d~~~ll~d-~~ 72 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL-P------GILLTTDPEELVND-PD 72 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCC-c------ccceeCCHHHHhhC-CC
Confidence 6667999999999999999888654 3 33 4577998776432110 0 23467789998864 23
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
.|+|+.+++......+. +...+..|.-|+..... ......++.+..++.|+.| +++.+.||
T Consensus 73 iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 73 IDIVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred CCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 79999998764332333 33456677777644321 1123344555556677754 44555544
No 236
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.21 E-value=0.0011 Score=67.59 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=60.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCC-Ceeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNL-PLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~-~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||+ |.+|..+.+.|.++ ++++. +++++....+.+......-.+. ..... .+.+++.+. +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 56777 5565543222222211100000 01111 144555444 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++ ...+++..+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 98 4444444443 4689999999875
No 237
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=97.20 E-value=0.0037 Score=53.70 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=72.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH--HHccCCCCCCcccc
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKK--AYDRNPDLANVLVD 399 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~--~~~~~~~~~~ll~~ 399 (484)
|+++-.|.++|-+.++.++.++|++.+-++. ++|..++.++-+.| .-.|+.++...+ ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4678899999999999999999999987753 39999999999877 457877776544 3332221
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
+.|. ++-..-+++-++..|-+.|+|+|..+.+.++|.
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2221 222344568888999999999999999988665
No 238
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.20 E-value=0.0015 Score=63.99 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=73.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEec--CCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLV--KAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~v--p~~ 80 (484)
.||.|||.|.+|..-|+...--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.+.++|++|-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999888899999999999998877654321 22 33455655555566699999776 444
Q ss_pred chHHHHHHHHhhhcCCCCEEEec
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
++-+-+.+++...++||.+|||.
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEE
Confidence 44444557888889999999986
No 239
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.18 E-value=0.0056 Score=64.72 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=75.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eec-CCHhHHH-hhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGF-HDPESFV-HSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~-~s~~e~~-~~l~~advIi~~vp~ 79 (484)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+.. ..+ .+. .+.+.+. ..++++|.|++++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 4679999999999999999999999999999999998887765321 011 111 2233221 234569999988887
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+ ...-.+..++..+....+|+-+.+... .+.+...|+.++-.|
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~vi~p 350 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIAISP 350 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEEECH
Confidence 6 333333334444555566665554432 233455677665444
No 240
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.18 E-value=0.00072 Score=61.63 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--------------------cCCHhH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--------------------FHDPES 62 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--------------------~~s~~e 62 (484)
..+|.|+|.|+.|..-+..+...|++|.++|.++++.+++...... .+.. ......
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3589999999999999999999999999999999888776654321 1111 111112
Q ss_pred HHhhcCCCcEEEEec--CCCchHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 63 FVHSIQKPRVIIMLV--KAGSPVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 63 ~~~~l~~advIi~~v--p~~~~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
+.+.++.+|+||.++ |.. ....++ ++.+..++++.+|+|.|-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~-~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGK-RAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTS-S---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCC-CCCEEEEhHHhhccCCCceEEEEEe
Confidence 222233389999744 333 222233 566677889999999864
No 241
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0016 Score=64.08 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=58.5
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|. +|.++|..|.+.|.+|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5899999988 999999999999999999987531 33445555 9999999988743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 221 3578899999998753
No 242
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.13 E-value=0.0022 Score=64.38 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=46.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHHHHh----hhcC-CCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFP--ISVYNRTT--SKVDETVERA----KQEG-NLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~--V~v~dr~~--~~~~~~~~~~----~~~~-~~~~~~~~s~~e~~~~l~~advI 73 (484)
|||+|||+ |.+|..++..|+..|+. |.++|+++ ++++...... ...+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 3332221110 0000 002333445444 444 9999
Q ss_pred EEecCC
Q 011501 74 IMLVKA 79 (484)
Q Consensus 74 i~~vp~ 79 (484)
|+++..
T Consensus 77 iitag~ 82 (309)
T cd05294 77 IITAGV 82 (309)
T ss_pred EEecCC
Confidence 999863
No 243
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.12 E-value=0.0016 Score=64.07 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=59.4
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|.. |.++|..|.+.|..|++++.. +.++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999887 999999999999999998643 1245566666 9999999997743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 332 5688999999998764
No 244
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.11 E-value=0.0044 Score=58.16 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 35 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 35 (484)
..+|+|+|+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999998
No 245
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.11 E-value=0.0022 Score=66.41 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=72.7
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cC-C-C-----Ceeec--CCHhHHHhhcCC
Q 011501 4 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKQ----EG-N-L-----PLYGF--HDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~-~-~-----~~~~~--~s~~e~~~~l~~ 69 (484)
|||.++|.|+||+++ +..|.+.|++|+++|++++.++.+.+++.- .+ + . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888889999999999999999888876420 00 1 0 11112 133445544455
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcC--------CCCEEEecCCCChHHHHHHHHH
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYME--------KGDCIIDGGNEWYENTERRQKA 117 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~~~~~~~~~~~ 117 (484)
+|+|.++|... ..+.+...+.+.|. ++-+|+.|-|.. .....+.+.
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~-~ng~~L~~~ 134 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI-RGTSFLKKH 134 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh-hHHHHHHHH
Confidence 89999888765 55666655555442 333788887775 333333333
No 246
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.10 E-value=0.0034 Score=50.34 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=47.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 36899999999999999999998 567888886 67777777664
Q ss_pred hHHHHHHHHhhhcCCCCEEEecC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~s 104 (484)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4432 1234456788888863
No 247
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.08 E-value=0.0033 Score=62.09 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|||||+|.||..++..+.+. +.++. ++|+++++.. .+.+.. ++ ..+.+.+++++. +..|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 45654 6799887633 222221 23 234578888764 347999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+.+.. ...++.|..++|.+...
T Consensus 75 ~~H~e~a----~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARHA----RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHHH----HHHHHcCCEEEECCccc
Confidence 8654433 23355788999887654
No 248
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.04 E-value=0.005 Score=58.95 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=68.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHHhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
++|-|+|.|.+|.++|..|.+.|.. |+++||+ .++. ..+.+.... .....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4443 222222110 0111255566655
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+|++|-++|.+....+.++ .+.++.+|++.++-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885432 2344444555664
No 249
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.01 E-value=0.003 Score=67.13 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=65.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc------------CCCCeeecCCH-h-----HHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE------------GNLPLYGFHDP-E-----SFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~------------~~~~~~~~~s~-~-----e~~~ 65 (484)
.++.|+|.|.+|...+..+...|..|+++|+++++.+.+...+... ++| .+..++. . .+.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gY-a~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGY-AKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccc-eeecCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999877666533210 000 0000000 0 0223
Q ss_pred hcCCCcEEEEec-----CCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 66 SIQKPRVIIMLV-----KAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 66 ~l~~advIi~~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+|+||.++ |.+ .-+.++....+++|.+|||.+..
T Consensus 244 ~~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 345589998888 333 11234556778888999988763
No 250
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.01 E-value=0.0081 Score=62.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|...+|.|||+|.+|.++|+.|.+.|++|+++|++++...... .... ....+.+.+... +|+||.+.+.+
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~-~~~~------~~~~~~~~~~~~---~dlvV~s~gi~ 70 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCP-YIHE------RYLENAEEFPEQ---VDLVVRSPGIK 70 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhH-HHhh------hhcCCcHHHhcC---CCEEEECCCCC
Confidence 5557899999999999999999999999999998876433211 0000 011233333344 89888887544
Q ss_pred ch---HHHHHH---------HHh-hh--c-CCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 81 SP---VDQTIK---------TLS-VY--M-EKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 81 ~~---v~~vl~---------~l~-~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.. +....+ .+. .. . ....|-|-.|+++-.++.-+...+...|...
T Consensus 71 ~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~ 131 (418)
T PRK00683 71 KEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPA 131 (418)
T ss_pred CCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCe
Confidence 21 222211 111 11 1 2223556667777556666677777766433
No 251
>PRK15076 alpha-galactosidase; Provisional
Probab=97.01 E-value=0.0032 Score=66.06 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHHH---Hhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETVE---RAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~~~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.||...+. .++ -.|.+|.++|+++++.+.... ..... + ..++..+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999977665 554 235689999999988663221 11110 0 1146667787777776 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998765
No 252
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.99 E-value=0.0057 Score=62.26 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhc------------CCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQE------------GNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~------------~~~~~~~~~s~~e~~~~l~ 68 (484)
|+||||+|+|.||+.+++.+.++ +++|. ++|++++....+.+..+-. ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999988865 56655 4577765554444321000 00023344555555544
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 69 KPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 69 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+|+||.|+|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 777777776652 222222 233456666666654
No 253
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.97 E-value=0.0056 Score=60.89 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHHhhhcC-CCCeeec--CCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKQEG-NLPLYGF--HDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~~~~~~~~~~-~~~~~~~--~s~~e~~~~l~~advIi~~ 76 (484)
+++.|+|.|-+|.+++..|++.|.+ |+++||++ ++.+++.+.....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554332110 0001111 1222332223348999999
Q ss_pred cCCCchH--HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 77 VKAGSPV--DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 77 vp~~~~v--~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+|.+..- +. .+.. ...+.++.+++|.--.+.. | .+.+..++.|...++
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVG 257 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeC
Confidence 9876311 10 0000 1346678899998765433 3 345555666765443
No 254
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.95 E-value=0.0046 Score=60.93 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=79.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|.|-++.+++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999887654321 0001112222111 1128999999998754
Q ss_pred HHH---HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 83 VDQ---TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 83 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
-.. .+. ...+.++.++.|+--.+. .| .+.+..+++|...++.
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~idG 248 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEECc
Confidence 321 122 345778899999876643 33 3556667778765543
No 255
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.94 E-value=0.0055 Score=64.75 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
..+|+|||. |.+|..+.++|.+.|| +|+.+|+..+.+ . ++..+.+++++-.. +|+++++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~ 71 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIV 71 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEe
Confidence 468999999 8899999999999999 566666553321 1 35678889988665 8999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCCh------HHHHHHHHHHHHcCCeEEec
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY------ENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------~~~~~~~~~l~~~g~~~i~~ 128 (484)
+|.. .+.++++++... .-+.+||-.+.... ...+++.+..++.|+.+++.
T Consensus 72 vp~~-~~~~~l~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 72 VPAK-YVPQVVEECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred cCHH-HHHHHHHHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 9986 777888777663 23345443332211 12244555666778777663
No 256
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0037 Score=61.43 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=59.7
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-|. +|.++|..|.+.|..|+++++.. .++++.+.+ +|+||.+++.+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5899999988 99999999999999999998542 245566666 9999999976643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5688999999998654
No 257
>PLN02602 lactate dehydrogenase
Probab=96.90 E-value=0.012 Score=60.09 Aligned_cols=98 Identities=13% Similarity=0.216 Sum_probs=60.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc----CCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE----GNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~----~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++......... +...+....+.++ ++. ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998876 7999999987654433221110 0002332345555 343 99999985
Q ss_pred CCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 332 11 22333444444 355677777753
No 258
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.88 E-value=0.021 Score=60.37 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +..++..++.... +..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCC
Confidence 4689999999999999999999999999999985 3333322221111 1112222333343344 899998764
No 259
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.85 E-value=0.004 Score=62.18 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=60.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCC-CCeeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGN-LPLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
|+||+|||. |.-|.-|.+.|+.+-+ ++..+..+..+-+.+.+...+..+ +..... .+++++ ...++|+||+|+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEecC
Confidence 569999985 9999999999998854 777666554333333333221100 001111 123333 2234899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++. -.+.+..+ +.+|..|||+|+..
T Consensus 80 hg~-s~~~v~~l---~~~g~~VIDLSadf 104 (349)
T COG0002 80 HGV-SAELVPEL---LEAGCKVIDLSADF 104 (349)
T ss_pred chh-HHHHHHHH---HhCCCeEEECCccc
Confidence 983 33343443 34577799999976
No 260
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.84 E-value=0.005 Score=55.98 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=52.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||+|||+ |..|+.++.-..+.||+|+.+-||++++..+....... .-.-++..+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q-----~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ-----KDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec-----ccccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 99999999999999999999999999986642110000 01224445455555689999998654
No 261
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.84 E-value=0.0077 Score=59.65 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|+|+|-.|++++..|++.|. +|+++||+.++.+++.+......+.......+..+....+..+|+||-++|-+..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 468999999999999999999997 7999999999998887653211000001112222111112238999999987631
Q ss_pred HH-H-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VD-Q-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
-. . .+. ...+.++.++.|.--.+. .| .+.+..+++|...++
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMPI-ET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCCC-CC-HHHHHHHHCCCEEEc
Confidence 10 0 011 123567788999866543 33 345556667765543
No 262
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.81 E-value=0.0045 Score=55.78 Aligned_cols=75 Identities=16% Similarity=0.401 Sum_probs=52.2
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.+++..|.++|..|++++... .++++.+++ +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 589999987 599999999999999999998653 244555665 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
++ ..++++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999988764
No 263
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.81 E-value=0.015 Score=59.09 Aligned_cols=124 Identities=13% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh---hcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK---QEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~---~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.++|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+.- ...+.+..-+....+.+..+ .+++-+.+++
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 89999988532222211100 00000000011111222222 2566666665
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
... ..+.++++ +..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 432 22233333 4456899999854 3444445566677788888776554
No 264
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.80 E-value=0.015 Score=54.68 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCC-HhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFHD-PESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s-~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|-|||.|.+|...+..|.+.|.+|++++++.. .+..+...+ .+..... ..+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 233433321 1222211 111 1233489999998776
Q ss_pred hHHHHHHHHh
Q 011501 82 PVDQTIKTLS 91 (484)
Q Consensus 82 ~v~~vl~~l~ 91 (484)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5565554433
No 265
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.75 E-value=0.077 Score=51.19 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=79.8
Q ss_pred CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe---cc
Q 011501 53 PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG---MG 129 (484)
Q Consensus 53 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~---~p 129 (484)
+++.++|..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|+++...-+..+.+.++.+...+ +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777787888887 9999999999987788899999999999999999999987777766666655444333 33
Q ss_pred CCCCHHhhhcCCccccCC--CHHHHHHHHHHHHHHhcc
Q 011501 130 VSGGEEGARYGPSLMPGG--SFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 130 v~gg~~~a~~g~~i~~gg--~~~~~~~v~~ll~~i~~~ 165 (484)
|-|.+ |..+..-| +++.++++.++.++.++.
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCC
Confidence 33333 44333333 788899999998888865
No 266
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.75 E-value=0.008 Score=64.06 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=38.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG 208 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG 208 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 5899999999999999999999999999999999988776654
No 267
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.74 E-value=0.026 Score=53.06 Aligned_cols=123 Identities=14% Similarity=0.227 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..-
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 100 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKERV 100 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhcC
Confidence 589999999999999999999997 89999988533333332210 00000000011112222221 2555555554431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+ .+...+..-++||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 101 ~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 101 T-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred C-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 11 122334456899998755 3444456667777888888876554
No 268
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.73 E-value=0.016 Score=61.48 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++|+|+|+|.-|.++|..|.+.|++|+++|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 589999999999999999999999999999875
No 269
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.68 E-value=0.013 Score=59.12 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhH-------HHHHHHHhhhcCCCCeeecC--CHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--------GFP-ISVYNRTTSK-------VDETVERAKQEGNLPLYGFH--DPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~-------~~~~~~~~~~~~~~~~~~~~--s~~e~~~ 65 (484)
|+|+|||+|.+|+.+++.|.+. +++ |.++|++... .+++.+...+ +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 344 4456766432 2222221110 000001112 5566654
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH-HHHHHHHHHHcCCeE-EeccCCCCH
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN-TERRQKAVAELGLLY-LGMGVSGGE 134 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~-i~~pv~gg~ 134 (484)
..+|++|-|+|....-......+.+.+..|.-||-.+...... -.++.+..++.|.++ +++.|.||-
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2489999999754221223444556677888888776543221 123334444556654 455566554
No 270
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.67 E-value=0.084 Score=51.06 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 53 PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 53 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+++.++|..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|.++...-++.+.+.++.+...+... +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56777788888887 9999999999977788899999999999999999999987776666666555554443321 2
Q ss_pred CHHhhhcCCccccCC--CHHHHHHHHHHHHHHhcc
Q 011501 133 GEEGARYGPSLMPGG--SFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 133 g~~~a~~g~~i~~gg--~~~~~~~v~~ll~~i~~~ 165 (484)
+.++.. |...+.-| +++.++++.++.++.++.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCC
Confidence 222333 34222333 788899999998888865
No 271
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.63 E-value=0.016 Score=58.01 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCC----CCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGN----LPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~----~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
||+|||+|.+|.++|..|+..+. ++.++|+++++++........... .+++. ..+.+++ +. +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 799999988765433222111000 01222 2344433 33 99999987
Q ss_pred CC
Q 011501 78 KA 79 (484)
Q Consensus 78 p~ 79 (484)
-.
T Consensus 77 G~ 78 (307)
T cd05290 77 GP 78 (307)
T ss_pred CC
Confidence 43
No 272
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.63 E-value=0.011 Score=53.94 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=52.4
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 6 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+.. -+.. ..+++.+.+.++.+|.||.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~----~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE----IIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE----EEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc----cceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 678995 999999999999999999999999998776 11110 0111 2455566666677999999997653
No 273
>PRK08328 hypothetical protein; Provisional
Probab=96.62 E-value=0.018 Score=55.39 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCe-eecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPL-YGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+..+... ....+. .......+-+..+ .+++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999997 788999876555444432100 000000 0000011111221 277777775543
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..++-+++ .+++-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 107 -~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 -LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred -CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 12222233 34456899999766 3443445556677899888877654
No 274
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.60 E-value=0.0099 Score=54.47 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=64.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+..+.......+-.-.....+.++.+ .+++=+.+.+..-.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 58999999999999999999998 5999998862222222110000000000011111112221 14444544433211
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc-CCeEEeccCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL-GLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~pv~ 131 (484)
.+ .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 12233445689999944 444434455666555 8888776544
No 275
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.60 E-value=0.019 Score=57.00 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=73.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHHhhhcCCCCeeecCCHhH---HHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKQEGNLPLYGFHDPES---FVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~~~~~~~~~~~~~~~~~~s~~e---~~~~l~~advIi~~ 76 (484)
+++.|+|+|-.+.+++..|+..|. +|+++||++ ++.+.+.+......+..+.. .+.++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEEC
Confidence 478999999999999999999886 799999995 47777665432110000111 22221 22233458999999
Q ss_pred cCCCchH--HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 77 VKAGSPV--DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 77 vp~~~~v--~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+|.+..- +. .... ...++++.++.|.--.+ ..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCCeEEC
Confidence 9876321 11 1000 12356788999987544 333 455666777776554
No 276
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.59 E-value=0.0065 Score=60.06 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. .|.+++..|.+.|.+|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 22233344 9999999975542
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .+.+++|.+|+|.+...
T Consensus 216 v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC------HHHcCCCCEEEEEEEee
Confidence 22 13578999999988653
No 277
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.58 E-value=0.012 Score=61.58 Aligned_cols=125 Identities=16% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-hhcCCCCeeec--CCHhHHHhhcCCCcEEEEec--
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v-- 77 (484)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ....... ... ++... ....+.... +|+|+.+=
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~~---~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLAE---FDLVVKSPGI 79 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhcccc---CCEEEECCCC
Confidence 478999999999999999999999999999977665 1111110 000 11111 111123333 89998852
Q ss_pred CCCch-HHHHHH---------HHhhhc--CCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 KAGSP-VDQTIK---------TLSVYM--EKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 p~~~~-v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.... ++.... ++.-.. ...-+-|..||++-.+|..+...+++.|....-++-.|.+
T Consensus 80 ~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 80 PPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 33222 222221 222222 2335566778888777777788888888877666666654
No 278
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.58 E-value=0.0063 Score=56.23 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec--CC----HhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF--HD----PESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~--~s----~~e~~~~l~~advIi~~ 76 (484)
++|.|||-+. +|.+||..|.++|..|+++|.+.-.. +...... +-..+ .+ +.+.+++ ||+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 5799999755 79999999999999999998654321 1110000 00111 12 4566665 9999999
Q ss_pred cCCCch-HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGSP-VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.+.. +. ..++++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 998854 23 24578999999999764
No 279
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.55 E-value=0.012 Score=58.97 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=58.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHHhhhcCCCCeeec-C--CHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDE----TVERAKQEGNLPLYGF-H--DPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----~~~~~~~~~~~~~~~~-~--s~~e~~~~l~~advI 73 (484)
|||+|||+ |.+|.++|..|+..|. ++.++|++ +++. +..... ...+..+ . ++.+.++ .+|+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~---daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALK---GADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcC---CCCEE
Confidence 58999999 9999999999998884 79999998 2211 111100 0123332 2 2223333 39999
Q ss_pred EEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|++.-.+. . ++++.+.+.++ .+..+||..||-.
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 99874421 1 22333455555 4667888887743
No 280
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.008 Score=59.13 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=58.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-| .+|.++|..|.++|..|++++.... ++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~---------------------~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK---------------------DLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH---------------------HHHHHHHh---CCEEEEecCCCCc
Confidence 589999999 8999999999999999999864321 23455566 9999999988753
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23578999999998754
No 281
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.53 E-value=0.0032 Score=55.07 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. .....+..-.....+.+.++ .+++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 79999977533222221100 00000001111222222222 1444455555442
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
....+..+. ..-++||+++.. +.....+.+.+.+.++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 123333433 345899998766 4555567778888899999887664
No 282
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.044 Score=58.44 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=45.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecC--CHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFH--DPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~--s~~e~~~~l~~advIi~~ 76 (484)
.++|.|+|+|..|.++|..|.+.|++|+++|++.....++.... ++.... ...+.+.. +|+||.+
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~S 81 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTS 81 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeC
Confidence 36799999999999999999999999999998876544432221 133321 22333344 8888875
No 283
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.52 E-value=0.0062 Score=62.84 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||+|+|. |..|..|.+.|.++ .++|..+.++...-+.+......-.+.......+.+.. .++.+|+||+++|++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPHG 115 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCHH
Confidence 468999996 99999999999998 67888887664433222221100000001111112211 123499999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+++.. +..|..|||.|+..
T Consensus 116 -~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHH----HhCCCEEEEcCchh
Confidence 44444444 44688999999875
No 284
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.49 E-value=0.015 Score=58.44 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=55.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcC-CCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQ-KPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~-~advIi~~vp~~~~ 82 (484)
.+|+|+|+|-+|..-.+.....|.+|+++|+++++.+.+.+.++.. ....+.++..+.++ .+|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997665555555558999999999999988887766531 22211122222111 2788888887 544
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
+...+ ..++++-.++-.+.
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~ 260 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGL 260 (339)
T ss_pred HHHHH----HHHhcCCEEEEECC
Confidence 44433 33444444444443
No 285
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.46 E-value=0.011 Score=59.88 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.++|.|+|+ |.||+.+++.|+++ | .++++++|++++...+..+... .. ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcC
Confidence 368999998 89999999999864 5 5899999999888877654321 01 1245555554 9999998865
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+..+ +++. ..+.++.++||.+- |.+... .+...|+.+++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~---~v~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDT---KVQGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCc---ccCCCCEEEEeCCcc
Confidence 4321 0111 23468899999874 333322 122367888776644
No 286
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.46 E-value=0.0027 Score=52.17 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=58.3
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++.|+|+|..|..++.++. ..|+. +.++|.++++..+-.. ++....+.+++.+.. +.|+.+++||..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~--------gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG--------GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEET--------TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC--------CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999986544 45776 5678999886432111 366777999988877 499999999986
Q ss_pred hHHHHHHHHhh
Q 011501 82 PVDQTIKTLSV 92 (484)
Q Consensus 82 ~v~~vl~~l~~ 92 (484)
.+.+++.++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766665
No 287
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.46 E-value=0.021 Score=57.58 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKQEG--N-LPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.......... . .+.....+..+.++.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--- 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD--- 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC---
Confidence 468999998 9999999999998875 799999965 32322221111000 0 012222333333444
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAG----S-----------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ . .++++.+.+..+-++..++|..||
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999986432 1 133444566666554667777664
No 288
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.41 E-value=0.013 Score=59.15 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKQEG--N-LPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|||+ |.+|.++|..|+..|. ++.++|++++. ++.......... . .++....+..+.++.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--- 78 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD--- 78 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC---
Confidence 468999999 9999999999998776 79999995432 222111110000 0 012233333333344
Q ss_pred CcEEEEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+. . ++++...+..+-++..++|..||
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 999999864321 1 33334555555544666777764
No 289
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.40 E-value=0.038 Score=52.01 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=47.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ +. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987754 334444332 23322 12223 33 38999988766
Q ss_pred C
Q 011501 80 G 80 (484)
Q Consensus 80 ~ 80 (484)
.
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 5
No 290
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.37 E-value=0.013 Score=55.44 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.......+-.-.....+-++.+ .+++-+...+.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 589999999999999999999998 5999998842222222110000000000011111112211 145555555432 1
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc-CCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL-GLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~p 129 (484)
....+.+ .+..-++|||++-. +.....+.+.+.+. ++.++.+.
T Consensus 107 ~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 1122222 24455899999543 34444556666666 77777664
No 291
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.36 E-value=0.014 Score=57.48 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=58.1
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+. +|.++|..|.+.|..|++++... .++.+...+ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999988 99999999999999999998431 245556666 9999999877643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. ..++++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 32 2368899999999875
No 292
>PRK05442 malate dehydrogenase; Provisional
Probab=96.36 E-value=0.026 Score=57.08 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HHH----HHHHHhhhcCCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVD----ETVERAKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~~~~~~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
+.||+|||+ |.+|.++|..|+..|. ++.++|++++ +++ ++....... ..++....+..+.++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~y~~~~d-- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL-LAGVVITDDPNVAFKD-- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh-cCCcEEecChHHHhCC--
Confidence 569999998 9999999999987664 7999999543 222 122111000 0012333333333444
Q ss_pred CCcEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 69 KPRVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 69 ~advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ .. ++++.+.+..+.++..++|..||
T Consensus 81 -aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 81 -ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 99999976431 11 33333555555545667777774
No 293
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.36 E-value=0.028 Score=50.54 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=50.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|||.|.+|...++.|.+.|++|+++++. ..+++.+.. .+... ..+++ ..+..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 58999999999999999999999999999643 334444321 12221 11111 1234489999988665 5
Q ss_pred HHHHHHHHh
Q 011501 83 VDQTIKTLS 91 (484)
Q Consensus 83 v~~vl~~l~ 91 (484)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 665554443
No 294
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.36 E-value=0.012 Score=58.93 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=58.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHHhhhcCCCCeeecC---CHhHHHhhcCCCcEEEEe
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKQEGNLPLYGFH---DPESFVHSIQKPRVIIML 76 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~~---s~~e~~~~l~~advIi~~ 76 (484)
||+|||+ |.+|.++|..|+..++ ++.++|+++... -++.. ... ..++..+. ++.+.++. +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998876 799999987211 11111 100 01233311 12333444 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+. .++++.+.+..+ .+..+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 75431 122333455555 4677777777743
No 295
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.36 E-value=0.012 Score=57.65 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=58.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 589999988 799999999999999999886431 244556666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24688999999998764
No 296
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.35 E-value=0.024 Score=63.14 Aligned_cols=98 Identities=10% Similarity=0.183 Sum_probs=72.8
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhh--------hcCC-c
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGA--------RYGP-S 142 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a--------~~g~-~ 142 (484)
||+|+|.. .+.++++++.++++++.+|.|.++++..-.....+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999987 78999999999999999999999998655555444443323568886 888876432 2444 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 143 LMP---GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 143 i~~---gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
++. ..++++++.++.+++.+|+++ +.+.+
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~-------~~~~~ 111 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV-------RAMSA 111 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE-------EECCH
Confidence 333 236888999999999999874 66655
No 297
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.35 E-value=0.019 Score=50.57 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=48.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.+++ +|+|+.+++....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 35566654 3356666666666666666655431 156666776 9999999987733
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++ ..++++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24688999999988765
No 298
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.34 E-value=0.034 Score=55.18 Aligned_cols=116 Identities=11% Similarity=-0.014 Sum_probs=77.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..||.|.|. |.+|..+..+|.+.||+ .+|=.||.. .++.. ++..+.+++|+.+.. .+|+.+++||..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 358999997 88999999999999997 554444331 11111 367788999887631 279999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
.+.++++++... .-+..||-.+.....+.+++.+...+.|+++++.--.
T Consensus 77 -~v~~~l~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 77 -FAADAILEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred -HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence 677777776652 2234455555444343456777778889988875433
No 299
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.32 E-value=0.026 Score=57.39 Aligned_cols=124 Identities=13% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhc-CCC--CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQE-GNL--PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~-~~~--~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+..-. ... +..-+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999998754443333211000 000 000011112222222 2556555554
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..-. ...+. +.+..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 3311 22222 334556899999765 4444456666777788888766554
No 300
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.059 Score=57.71 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=70.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec--CC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v--p~ 79 (484)
.+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+ +... ....+.+.. +|+||.+- |.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~l~~---~D~VV~SpGi~~ 82 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERG-------VATVSTSDAVQQIAD---YALVVTSPGFRP 82 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCC-------CEEEcCcchHhHhhc---CCEEEECCCCCC
Confidence 5899999999999999999999999999998876655443322 2222 222333444 89888865 33
Q ss_pred CchHHHHHH----------HHhhhc-------CC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 80 GSPVDQTIK----------TLSVYM-------EK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 80 ~~~v~~vl~----------~l~~~l-------~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
....-.... ++.-.+ .+ .-+-|-.|+++-.++.-+...+...|....-.+-.|.+
T Consensus 83 ~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p 155 (488)
T PRK03369 83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP 155 (488)
T ss_pred CCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence 222111111 121111 12 23445566666555555667777766543333334443
No 301
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.30 E-value=0.02 Score=57.62 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHH--HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEECC
Confidence 569999999 999999999999655 58999999432211 22211110 12333333222122333499999987
Q ss_pred CC
Q 011501 78 KA 79 (484)
Q Consensus 78 p~ 79 (484)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 54
No 302
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=96.29 E-value=0.018 Score=53.87 Aligned_cols=125 Identities=17% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hc--CCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QE--GNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~--~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+.- .. ...+..-+....+.++.+ .+++-+...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 59999877433222221100 00 000000011112222222 2667666664
Q ss_pred CCch-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSP-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.... ..+-.. ..+.+=++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~~~~~~~~~---~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIE---EYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4311 011122 233455889988544 5555667778888899888876544
No 303
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=96.29 E-value=0.035 Score=47.11 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHhC----CCcE-EEEeCChhHHH-HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 10 GLAVMGQNLALNIAEK----GFPI-SVYNRTTSKVD-ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 10 GlG~mG~~lA~~L~~~----G~~V-~v~dr~~~~~~-~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|.||+.++..|.+. +++| .++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 4554 467888 1110 0111111 135678999998833 39999999544 344
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH---HHHHHHHHHHHcCCeE
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE---NTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~ 125 (484)
.+. +.+.+..|.-||-.|..... .-.++.+..++.|.+|
T Consensus 73 ~~~---~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEY---YEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHH---HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHH---HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 443 44556688888887766444 2233444445556654
No 304
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.28 E-value=0.26 Score=50.32 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=93.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCC---------------Ce---eecCCHhHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNL---------------PL---YGFHDPESFV 64 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~---------------~~---~~~~s~~e~~ 64 (484)
.+|-|+|+|..+..+|..+.+.+. .|-+++|...+-+.+.+.....++. .+ ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999998875 6999999888877776554331110 00 1233455555
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcC--CeEEec-------cCCCCH
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELG--LLYLGM-------GVSGGE 134 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~-------pv~gg~ 134 (484)
.. =|.+|+|||.+ +-.+|+++|-.. |..=+.||-.|... +...-+...+.+.| +.+|.- -.+.++
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 54 79999999998 677888776642 33334555555543 23323334444433 333321 233332
Q ss_pred Hhh---hcCC--ccccC---CCHHHHHHHHHHHHHHhcc
Q 011501 135 EGA---RYGP--SLMPG---GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 135 ~~a---~~g~--~i~~g---g~~~~~~~v~~ll~~i~~~ 165 (484)
... ..|. .+.+| ++....+++..+|+.++-+
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCe
Confidence 111 1111 34444 2445677888888887654
No 305
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.26 E-value=0.016 Score=56.94 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=58.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 579999975 58999999999999999998643 1245666676 9999999988753
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 33 24688999999999775
No 306
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.25 E-value=0.017 Score=48.25 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhh
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVY 93 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~ 93 (484)
-+..++..|.+.|.+|.+||+.-............ ++..++++++.++. +|.||++++.+..-.--.+.+...
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~f~~l~~~~~~~~ 90 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDEFRELDWEEIAKL 90 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GGGGCCGHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHHHhccCHHHHHHh
Confidence 46678999999999999999886654332211001 36778899988887 999999998874333234667777
Q ss_pred cCCCCEEEecCCCC
Q 011501 94 MEKGDCIIDGGNEW 107 (484)
Q Consensus 94 l~~g~iiId~st~~ 107 (484)
+.++.+|+|+-+..
T Consensus 91 ~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 91 MRKPPVIIDGRNIL 104 (106)
T ss_dssp SCSSEEEEESSSTS
T ss_pred cCCCCEEEECcccc
Confidence 77889999987753
No 307
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.25 E-value=0.038 Score=54.64 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=78.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .++.. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~- 74 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP- 74 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH-
Confidence 5799999 499999999999999998 777777652 11111 467888999988742 269999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.+.++++++...- -+..||-.+.......+++.+..++.|+.+++.-
T Consensus 75 ~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 6777777766522 2344454444433334566677778899888643
No 308
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.24 E-value=0.017 Score=59.12 Aligned_cols=99 Identities=12% Similarity=0.301 Sum_probs=60.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHH-hhh--cC---C--CCeee-cCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKQ--EG---N--LPLYG-FHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~-~~~--~~---~--~~~~~-~~s~~e~~~~l~~ 69 (484)
|+++||+|+| .|.+|..+.+.|.++.. ++..+.++++...+-... ... .+ + ..+.. ..+++++ ..
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--- 76 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD--- 76 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---
Confidence 7778999998 89999999999998755 777775555432211110 000 00 0 01111 1234443 43
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+|+.|+|.+ ....+.+.+. ..|..+||.|...
T Consensus 77 ~DvVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 77 VDIVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred CCEEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 99999999987 3344444332 3678899998754
No 309
>PLN00106 malate dehydrogenase
Probab=96.24 E-value=0.022 Score=57.38 Aligned_cols=73 Identities=12% Similarity=0.268 Sum_probs=45.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... -++..... ...+..+.+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997665 899999987211 12221111 0123322223222333444999999874
Q ss_pred C
Q 011501 79 A 79 (484)
Q Consensus 79 ~ 79 (484)
.
T Consensus 96 ~ 96 (323)
T PLN00106 96 V 96 (323)
T ss_pred C
Confidence 3
No 310
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.23 E-value=0.038 Score=57.90 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHHhhhc-CCC----CeeecCCHhHHHhhc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAKQE-GNL----PLYGFHDPESFVHSI 67 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~~~~~~~~~-~~~----~~~~~~s~~e~~~~l 67 (484)
++|+|.|.|++|..+|+.|.+.|.+|.++ | .+.+.+.+..+..... .++ +... .+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcccccc-
Confidence 68999999999999999999999998876 7 5655554443321000 000 0111 133343331
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 68 QKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.||+++-|-..+.-..+....+.. ++=++|+...|... +.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 489999998877555555555542 13367888888763 66677888999998875
No 311
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.23 E-value=0.048 Score=54.33 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=77.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.++++.+|.++|.+..+.+++++|++.+-++ .++|..++.++.+.| ..+|+.++...+.+.+++ . ++
T Consensus 162 ~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~-~-----~~ 228 (292)
T PRK15059 162 NGDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKRT-F-----NP 228 (292)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcCC-C-----CC
Confidence 3789999999999999999999999988664 349999999999877 467887766544332221 1 12
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|.- +-...+++-++..|-+.|+|+|....+..+|+..
T Consensus 229 ~f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 229 GFKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred CCch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 2322 2234566888899999999999988888877643
No 312
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.22 E-value=0.01 Score=60.22 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=57.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||. |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..+ .+. +|+||+|+|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~-~~~---vDvVf~A~g 72 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFD-FSG---VDIALFSAG 72 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHH-HcC---CCEEEECCC
Confidence 58999985 999999999999988864 55544433222221111 0 122221 2222 233 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+ ...++...+ +..|..|||.|+..
T Consensus 73 ~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 73 GS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred hH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 87 445555444 34678999999754
No 313
>PLN02477 glutamate dehydrogenase
Probab=96.21 E-value=0.036 Score=57.56 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=72.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~ad 71 (484)
++|+|.|+|++|..+|+.|.+.|.+|. +.|.+ .+.+.+..+....-.++ +... -+.+++... .+|
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999888 66776 44443333221100000 0111 133444432 489
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+++-|--.+.-..+.+ +.+ +=++|+...|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 9888754442222332 333 4478888888864 556778889999988753
No 314
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.21 E-value=0.0069 Score=57.41 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=50.6
Q ss_pred CeEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... +.++....++.++++. .++|.+++|+|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~------g~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG------GIPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC------CeEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688766 57988766432211 1012223455666543 2489999999987
Q ss_pred chHHHHHHHH
Q 011501 81 SPVDQTIKTL 90 (484)
Q Consensus 81 ~~v~~vl~~l 90 (484)
. ..++.+.+
T Consensus 158 ~-~~~i~~~l 166 (213)
T PRK05472 158 A-AQEVADRL 166 (213)
T ss_pred h-HHHHHHHH
Confidence 4 44444433
No 315
>PRK05086 malate dehydrogenase; Provisional
Probab=96.20 E-value=0.046 Score=54.98 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi 74 (484)
|||+|||+ |.+|..++..|.. .++++.++|+++... -++... .. ...+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~-~~--~~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHI-PT--AVKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcC-CC--CceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 346899999985431 122110 00 001222 234334444 499999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9985421 122333444444 4566777777654
No 316
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.18 E-value=0.034 Score=58.27 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=61.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHHhhhcC---CCCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKQEG---NLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~~~s~~e~~~~l~~a 70 (484)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-...... .-.+....+..+..+. +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 48999999 99999999999987 65 78899999987655432221100 0023323333333444 9
Q ss_pred cEEEEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 71 RVIIMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 71 dvIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+||++--.+. . ++++.+.|..+..+..+||..||
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999764421 1 22333445453345666777764
No 317
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.021 Score=56.15 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=58.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++..+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999996 4589999999999999999997432 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 33 24688999999999764
No 318
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.13 E-value=0.021 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=58.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 5689999999999999999987432 245566666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24688999999998764
No 319
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.12 E-value=0.02 Score=56.15 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=58.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.+++..|.++|..|++++... .++.+.+++ ||+||.++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------------------KNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 4589999999999999999997431 255666676 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24588999999998654
No 320
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.12 E-value=0.02 Score=56.61 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=58.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999996 458999999999999999998533 2255566676 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24688999999998765
No 321
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.084 Score=56.02 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=33.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
++|.|||+|..|.+.|..|.+.|++|.++|..+.....+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHH
Confidence 579999999999999999999999999999876544433
No 322
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.09 E-value=0.019 Score=55.94 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=59.7
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+. +|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 5789999876 79999999999999999998542 245555666 9999999977644
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+. .+++++|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 356889999999987753
No 323
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.11 Score=54.98 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v 77 (484)
++|.|+|.|.+|.+.|+.|++.|++|+++|++.... +.+.+.+ +... ....++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g-------~~~~~~~~~~~~~~~--~~d~vV~s~ 76 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEG-------IKVICGSHPLELLDE--DFDLMVKNP 76 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcC-------CEEEeCCCCHHHhcC--cCCEEEECC
Confidence 579999999999999999999999999999875332 2232222 2222 233343321 278877754
Q ss_pred --CCCch-HHHHH---------HHHhhhc-CCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 78 --KAGSP-VDQTI---------KTLSVYM-EKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 78 --p~~~~-v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
|.+.. ++... .++...+ ....|-|-.|++.-.++.-+...+...|....
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~ 138 (447)
T PRK02472 77 GIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHAL 138 (447)
T ss_pred CCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeE
Confidence 33322 22221 1222222 22344555666665555556667777665443
No 324
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.08 E-value=0.021 Score=56.07 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=57.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------------------RNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999964 589999999999999999986331 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24688999999998754
No 325
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.06 E-value=0.029 Score=53.70 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+..+.- .....+-.-+....+.++.+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 78899877533333322110 00000000011112222222 255555555443
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
- ..+-+. +.+..-++||++... +..-..+.+.+.+.++.++.+.+.|
T Consensus 100 i-~~~~~~---~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAENAE---ELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHHHHH---HHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 111222 233445889988664 4444556667777889898887655
No 326
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.06 E-value=0.013 Score=59.36 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred CC-CCeEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 1 MV-QTRIGLAGL-AVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~-~~~IgiIGl-G~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|+ |++|+|+|. |..|..+.+.|.+++|.+. .. .+.+...+....... .+.+... +..++ +. +|++|+
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~--~l~~~~~-~~~~~-~~---vD~vFl 72 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK--NLRVREV-DSFDF-SQ---VQLAFF 72 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc--ceEEeeC-ChHHh-cC---CCEEEE
Confidence 54 469999996 9999999999998777433 33 222221110100000 0011111 22333 44 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|++ ....++..+. ..|..|||.|+..
T Consensus 73 a~p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 73 AAGAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred cCCHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 99976 4444444443 4688999999875
No 327
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.06 E-value=0.03 Score=56.13 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------CCcEE---EEeCChhHHHHHHHHhhhcCCCCeeecCCH-----hHHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--------GFPIS---VYNRTTSKVDETVERAKQEGNLPLYGFHDP-----ESFV 64 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--------G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~-----~e~~ 64 (484)
|+..+|+|+|+|.+|+++++.|.++ |.++. +.+|+......+..... ....++. .+++
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVL 74 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhh
Confidence 5667999999999999999999875 33333 44776655431110000 0122233 3444
Q ss_pred hhcCCCcEEEEecCC-CchHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHHHcCCe-EEeccCCCCHH
Q 011501 65 HSIQKPRVIIMLVKA-GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVAELGLL-YLGMGVSGGEE 135 (484)
Q Consensus 65 ~~l~~advIi~~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~-~i~~pv~gg~~ 135 (484)
.. +..|+|+-+++. -...+. ++.+...+..|..||-......... .++.+..++.|.. +.++.|.||-+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 33 347899998887 444555 6777788888988886554432111 1344444555654 56677777654
No 328
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.05 E-value=0.022 Score=55.93 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=58.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++...+ ||+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 579999965 589999999999999999987542 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 214 i~~------~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LRS------DMVKEGVIVVDVGINR 232 (282)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 332 3588999999998664
No 329
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.04 E-value=0.022 Score=56.23 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=58.3
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++... .++++.+++ ||+||.++..+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999965 589999999999999999988532 245566666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 24578999999998764
No 330
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.02 E-value=0.11 Score=55.87 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=67.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
++|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.+.+.+.. ..+.......+.... +|+||.+ +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 5799999999999999999999999999997543 22334332210 011111122334444 8998886 444
Q ss_pred C-----chHHHH-------------HHHHhhhc-----CCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 G-----SPVDQT-------------IKTLSVYM-----EKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
. ..+... +..+...+ .+..|-|-.|+++-.++.-+...|...|....
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 2 111111 11122111 11235555666665556666777777776543
No 331
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.01 E-value=0.023 Score=55.81 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++... .++.+..++ ||+||.++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 579999964 589999999999999999987432 244455566 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 33 24588999999998654
No 332
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.01 E-value=0.024 Score=57.01 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 5999999999999999999999999776544332211 0111 1244445555556899888754
No 333
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.00 E-value=0.013 Score=53.24 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHH-HH-hCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALN-IA-EKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~-L~-~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+.++.+||.|++|.+++.. +. ++|+++ .+||.+++++-.... +..+.-.++++..++.. ..|+.|+|||.
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~------~v~V~~~d~le~~v~~~-dv~iaiLtVPa 156 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG------DVPVYDLDDLEKFVKKN-DVEIAILTVPA 156 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC------CeeeechHHHHHHHHhc-CccEEEEEccH
Confidence 3579999999999999843 33 567764 578999987544332 11344456677777642 48999999998
Q ss_pred CchHHHHHHHHhh
Q 011501 80 GSPVDQTIKTLSV 92 (484)
Q Consensus 80 ~~~v~~vl~~l~~ 92 (484)
. ..+++.+.|..
T Consensus 157 ~-~AQ~vad~Lv~ 168 (211)
T COG2344 157 E-HAQEVADRLVK 168 (211)
T ss_pred H-HHHHHHHHHHH
Confidence 6 66777766554
No 334
>PRK08223 hypothetical protein; Validated
Probab=95.99 E-value=0.036 Score=54.63 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|-+|+.++.+|++.|. ++.++|.+.=....+..+.. .....+-.-+....+.+.++ .+++=|.+.+..-
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEeccc
Confidence 589999999999999999999997 78899887544444432210 00000001111222223322 1444454444321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC-hHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW-YENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+-+.++ +..-++|||++... ...-..+.+.+...++.++.+.+.|-
T Consensus 107 ~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 107 G-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred C-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 1 1112233 33458999988653 23444556677788998888765543
No 335
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.99 E-value=0.024 Score=56.08 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=58.0
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++.. +.++++.+++ +|+||.++..+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 589999975 58999999999999999999643 1256666776 9999999977632
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24688999999998764
No 336
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.99 E-value=0.11 Score=51.58 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=75.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.++++.+|.++|.+.++.+..++|++.+..+. ++|..++.++|+.+ ...|.+++.....+.+.+ .. +
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~d-~~-----~ 231 (296)
T PRK11559 165 IGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDRN-FK-----P 231 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcCC-CC-----C
Confidence 36889999999999999999999999987753 49999999999876 456666654433222211 11 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|. ++-..-+++-++..|-+.|+|+|....+...|+..
T Consensus 232 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 232 GFR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred Ccc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 121 11223345778889999999999999999866543
No 337
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.97 E-value=0.1 Score=54.88 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=70.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec-
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV- 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v- 77 (484)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 111 11100 0 13222 23 233343 89888754
Q ss_pred -CCCch-HHHHH---------HHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 -KAGSP-VDQTI---------KTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 -p~~~~-v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.+.. +.... .+++ ..+....|-|-.|++.-.++.-+...|...|..+.-++..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 33322 22111 1222 2232234555666666556666677788877765554444443
No 338
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.97 E-value=0.013 Score=58.57 Aligned_cols=94 Identities=34% Similarity=0.630 Sum_probs=71.9
Q ss_pred HHHHhHHHHHHHHHHH--hCCCCHHHHHHHHHhhccCc-chhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHH
Q 011501 194 YGDMQLIAEAYDVLKS--VGKLSNEELQQVFSEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWT 270 (484)
Q Consensus 194 ~~~~~~~~Ea~~l~~~--~g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~ 270 (484)
++.++.++|++.++++ .| +|++++.++ |+.+. ++|++++...+++..++.+ ..+..+.++ +.+.+|+
T Consensus 181 ~~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~~---~~~~~~~kd---~~~~~~~ 250 (301)
T PRK09599 181 YGMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPKL---DEISGYVED---SGEGRWT 250 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCCH---HHHHHHHHh---hCcHHHH
Confidence 4567899999999999 98 999998776 56664 6999999998888543211 113344444 2344799
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHhcCc
Q 011501 271 VQQAADLSVAAPTIESSLDARFLSGLK 297 (484)
Q Consensus 271 ~~~A~~~gvp~p~~~~av~~r~~s~~~ 297 (484)
++.|.+.|+|+|++..+++.|+.+...
T Consensus 251 ~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 251 VEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999988888887754
No 339
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.95 E-value=0.096 Score=55.38 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=70.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEec--
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~v-- 77 (484)
.|.|||+|..|.++|+.|.+.|++|+++|..+.. .+.+.+... ++... .+. +.+.. +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 5999999999999999999999999999976532 223332100 12222 233 33344 88887743
Q ss_pred CCCch-HHHHH---------HHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 KAGSP-VDQTI---------KTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 p~~~~-v~~vl---------~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.+.. +.... -+++.. +....+-|-.|+++-.++.-+...|...|..+.-++..|.+
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 33222 22111 123322 22233455566666555556677777777766555555443
No 340
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.94 E-value=0.042 Score=54.83 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKV 39 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~ 39 (484)
+||+|||.|.+|+++|..|...+. ++.+||++.++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc
Confidence 489999999999999999987664 799999996543
No 341
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.94 E-value=0.036 Score=54.51 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=72.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+... ... .+++ . ...+|+||-|+|-+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 368999999999999999999997 59999999999888776431 111 1111 1 1238999999986521
Q ss_pred --HHH---HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 --VDQ---TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 --v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+. -+. ...+.++.+++|.--.+. .| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeC
Confidence 000 011 124677889999876543 33 345556677765553
No 342
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.89 E-value=0.13 Score=54.95 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEecCC-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLVKA- 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~vp~- 79 (484)
++|.|||.|..|..+|..|++.|++|+++|+++. ....+.+..... ++... .... .. ..+|+||++.--
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~---~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LP---EDTDLVVTSPGWR 89 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-cc---CCCCEEEECCCcC
Confidence 5799999999999999999999999999996643 222222222111 13322 2222 22 238999987622
Q ss_pred --CchHHHHH---------HHHh-hhcCCC----CEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 80 --GSPVDQTI---------KTLS-VYMEKG----DCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 80 --~~~v~~vl---------~~l~-~~l~~g----~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
...+...- -+++ ..+.+. .|-|-.|+++-.++.-+...+...|...
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 21111111 1222 222221 3555566666555555666777766543
No 343
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.85 E-value=0.052 Score=50.79 Aligned_cols=121 Identities=17% Similarity=0.277 Sum_probs=70.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh--hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK--QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~--~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|.|||+|.+|..++++|+..|. +++++|.+.=....+..+.- .. ..+-.-+....+.++.+ .+++-+.+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~-diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAE-DLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHH-HcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 589999999999999999999998 69999977433222221100 00 00000011122222222 267766665432
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.+...++ +..=++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 11112222 334478888765 35555667777888899888887654
No 344
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.85 E-value=0.031 Score=54.93 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=57.4
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------------------~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------------------ADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 579999965 589999999999999999986431 245566666 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24588999999998764
No 345
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.031 Score=55.05 Aligned_cols=74 Identities=12% Similarity=0.272 Sum_probs=57.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|++++... .++++.+.+ ||+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999996 5689999999999999999996432 245556666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 23578999999998664
No 346
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.83 E-value=0.029 Score=55.27 Aligned_cols=74 Identities=12% Similarity=0.303 Sum_probs=57.6
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|++++.. +.++++..++ +|+||.++..+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 579999965 58999999999999999998743 1245566666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 33 24688999999998653
No 347
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.78 E-value=0.026 Score=56.99 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 37 (484)
++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 589999999999999999999996 6999999975
No 348
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.78 E-value=0.036 Score=54.56 Aligned_cols=74 Identities=12% Similarity=0.258 Sum_probs=57.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++.|||- ..+|.++|..|.+ ++..|+++... +.++++.+++ ||+||.++..+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999996 5689999999998 68899998753 1255666676 99999999887
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 5332 24688999999998765
No 349
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.78 E-value=0.069 Score=51.75 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+..- ....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~i 111 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINARL 111 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999997 788998775443333322100 0000000111122222222 2566666655431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+-+. ..+..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 112 ~-~~~~~---~~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 112 D-DDELA---ALIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred C-HHHHH---HHHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeecc
Confidence 1 11122 234456899999764 3443445666677888888865543
No 350
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=95.78 E-value=0.059 Score=53.82 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=57.5
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC---CCCeeecCCHhHHHhhcCCCcEEEEecCCCc-
Q 011501 8 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG---NLPLYGFHDPESFVHSIQKPRVIIMLVKAGS- 81 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~~~s~~e~~~~l~~advIi~~vp~~~- 81 (484)
|||+|.+|.++|..|+..+. ++.++|++.++++.......... ..+.+...+..+..+. +|+||++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998876 79999998876544433221110 0022333232233344 999999764321
Q ss_pred ---h-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 ---P-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ---~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
. ++++.+.+..+ .+..++|..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 33334555554 456667777753
No 351
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.77 E-value=0.061 Score=51.28 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=51.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 6 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|.|+|. |.+|+.++..|.+.+++|.+.-|++.+ .+.+...+... +.. ..+.+.+.+.++.+|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCcc
Confidence 689985 999999999999999999999998743 44555443210 111 235667777777899999998843
No 352
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.77 E-value=0.045 Score=59.10 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++-|+|.|-+|.+++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+..-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999988887754321 1111222222111 1267888777765311
Q ss_pred --HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 --DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 --~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+. -+. ...++++.+++|..-.+.. | .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEe
Confidence 10 011 1236677899998766533 3 34455566666544
No 353
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.73 E-value=0.058 Score=52.10 Aligned_cols=124 Identities=14% Similarity=0.207 Sum_probs=73.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|..+|.+|++.|. +++++|.+.-....+..+..- ....+-.-+....+.+..+ .+++-+.+++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999997 788999876544443322100 0000000011112222222 2666666665431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+. +...+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|.
T Consensus 104 ~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 104 D-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred C-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEeccc
Confidence 1 112 223345668999998663 4444566777788998888765543
No 354
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.033 Score=56.25 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=56.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHHhhhc---CCCCeeecCCHhHHHhhcCCCc
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKQE---GNLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~~~~~~~~~---~~~~~~~~~s~~e~~~~l~~ad 71 (484)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++.+......... .........+..+.++. +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999997663 499999987 5432211110000 00012222344444554 99
Q ss_pred EEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 72 VIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 72 vIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+||++--.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999876332 11 33334455555445556666653
No 355
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.033 Score=54.67 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=57.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++.+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 8999999999999999999986532 34445555 9999999975532
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. . .++++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2368999999998654
No 356
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.67 E-value=0.18 Score=47.82 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888876 8899999999999999999999999887766543
No 357
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.62 E-value=0.039 Score=55.49 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=57.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999965 589999999999999999986432 245566666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 33 24688999999998764
No 358
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=95.62 E-value=0.13 Score=53.14 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKQEG--N-LPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~a 70 (484)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-.....- . .++....+..+.++. +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 48999999 9999999999998764 2 33 44 888887654432221100 0 023323333333444 9
Q ss_pred cEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 71 RVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 71 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+||++--.+ .. ++++...+..+..+..+||..||
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 9999976332 11 23333455555556677777775
No 359
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.59 E-value=0.22 Score=48.31 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=71.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCC----C-----CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGN----L-----PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~----~-----~~~~~~s~~e~ 63 (484)
.+|.|-|.|++|...|+.|.+.|.+|. +.|. +.+.++.+.+.....+. + +.+.. +.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 589999999999999999999999887 5562 23334332221111000 0 01222 44454
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .||+++-|--.+.-..+.+..|.. .+=++|+...|.+. +.+..+.|.++|+.++.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 442 489998885544333333333321 13367888888763 336778889999988754
No 360
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.59 E-value=0.045 Score=53.90 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=56.9
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++... +.++++.+++ ||+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 579999965 5899999999988 7889988643 1245566666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 774322 24688999999998764
No 361
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=95.58 E-value=0.15 Score=50.34 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=79.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH-HHccCCCCCCcccc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKK-AYDRNPDLANVLVD 399 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~-~~~~~~~~~~ll~~ 399 (484)
.|.|+.+|+++|=+-.+.+++++|++.+-+++ + +|.+.+.++-++| --+|+.++.-.. .++++ ++
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FS 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CC
Confidence 47899999999999999999999999997764 3 9999999999887 357888766322 22222 12
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYR 441 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~ 441 (484)
+-|. ++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F~--v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGFA--VDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cchh--HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 3332 233456678888899999999999999998776443
No 362
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=95.57 E-value=0.043 Score=55.51 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 458999999999999999998643 2355666676 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 33 24688999999998654
No 363
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.57 E-value=0.083 Score=50.19 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 47 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAA 47 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 57889975 999999999999999999999999877655443
No 364
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.56 E-value=0.14 Score=52.13 Aligned_cols=128 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCC--c-EEEEeCChhH-------HHHHHHHhhhcCCC-Cee----e-cC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAE--------KGF--P-ISVYNRTTSK-------VDETVERAKQEGNL-PLY----G-FH 58 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~--------~G~--~-V~v~dr~~~~-------~~~~~~~~~~~~~~-~~~----~-~~ 58 (484)
..+|+|+|+|++|+.+++.|.+ .|. + |.+.|++... .+++.+.....+.. .+. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 3689999999999999998887 464 3 3345654221 22222211110000 010 0 11
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEEe-ccCCCCHH
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYLG-MGVSGGEE 135 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~-~pv~gg~~ 135 (484)
++++++... .+|+||-+++.. ...+.. ...+..|.-||-.++.... .-.++.+..+++|..+.- +.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~---~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWH---LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHH---HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 666776432 389999888543 444443 3445577777777664211 222344444556766544 44665543
No 365
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.54 E-value=0.14 Score=53.00 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=68.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|..|..++.+|++.|. +++++|.+.-....+..+.- .+...+..-.....+.+..+ .+++-+...+..-
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~~ 214 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQERV 214 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 579999999999999999999998 79999988433222221110 00000000011112222211 1445444443321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. ...+..+ +..-++|||++... ..-..+.+.+.+.++.|+.+.+.|
T Consensus 215 ~-~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 215 T-SDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-hHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 1222222 33458999998764 333345666778899898887654
No 366
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.54 E-value=0.17 Score=51.93 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=71.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+-+..+ .+++-+.+.+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 78899987533322222100 00000000011112222222 2677776665432
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
..+. ....+..-++|||++-.. ..-..+...+.+.++.|+.+.+.|-
T Consensus 108 ~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 2121 222344568999998654 3333455666778888888776653
No 367
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.51 E-value=0.15 Score=54.22 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEec--C
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLV--K 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~v--p 78 (484)
++|.|||+|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +... ....+.+.. +|+||.+- |
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spgi~ 77 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSAIP 77 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCCCC
Confidence 57999999999999 899999999999999976542 23333221 3332 122233333 89888754 3
Q ss_pred CCc-hHHHHH---------HHHhhh-cCC-CCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 79 AGS-PVDQTI---------KTLSVY-MEK-GDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 79 ~~~-~v~~vl---------~~l~~~-l~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
... .+.... -+++.. +.+ ..+-|-.|+++-.++.-+...++..|.
T Consensus 78 ~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 78 DDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 322 222211 123222 222 345566677776666666777777774
No 368
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.49 E-value=0.054 Score=54.26 Aligned_cols=81 Identities=10% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+.+|+||| .|..|..|.+.|.++.+ ++.....+..+ . . .+.++..+. +|++|+|+|++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~------------~---~~~~~~~~~---~DvvFlalp~~ 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D------------A---AARRELLNA---ADVAILCLPDD 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c------------c---cCchhhhcC---CCEEEECCCHH
Confidence 56999999 69999999999998864 33322222111 0 1 122333344 89999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+...++. ..|..|||.|+..
T Consensus 62 -~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 62 -AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred -HHHHHHHHHH---hCCCEEEECChhh
Confidence 4444444443 4688999999764
No 369
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.48 E-value=0.18 Score=52.33 Aligned_cols=112 Identities=9% Similarity=0.113 Sum_probs=69.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~ 82 (484)
.|-|+|.|.+|..+++.|.+.|++|.+.|.+. .++....+.. -+.+..+-++..+ .+++|+.|+++.+++..
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 58899999999999999999999999998763 2332222211 1333334444443 35679999999887643
Q ss_pred HHHHHHHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++.... .+.+ ..+|+-..+. +..+.+++.|...+=.|
T Consensus 316 Nl~ivL~ar-~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAK-EMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333332 3434 4566655442 23455566788776655
No 370
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.44 E-value=0.21 Score=52.72 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec-
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v- 77 (484)
.++|.|+|.|..|.+.|+.|++.|+.|.++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 358999999999999999999999999999976543 23332210 0 13222 112233334 89998864
Q ss_pred -CCC-chHHHHH---------HHHh-hhcC---CCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 78 -KAG-SPVDQTI---------KTLS-VYME---KGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 78 -p~~-~~v~~vl---------~~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
|++ ..+.... -+++ ..++ ...|-|-.|+++-.++.-+...|...|....
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~ 140 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTV 140 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeE
Confidence 322 1222221 1222 2221 1235555666665555666777777776543
No 371
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.43 E-value=0.14 Score=58.31 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEec--
Q 011501 3 QTRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~v-- 77 (484)
+++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.+ +... ....+.+.. +|+||.+-
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCc
Confidence 4569999999999987 9999999999999997643 233343322 3332 122233333 89888753
Q ss_pred CCCc-hHHHHH---------HHHhhhcCC--CCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 78 KAGS-PVDQTI---------KTLSVYMEK--GDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 78 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
|... .+.... -+++..+.+ ..|-|-.|+++-.++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3321 122211 122222222 245566677766566666777777664
No 372
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=95.37 E-value=0.071 Score=52.49 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhc------CC-CcEEEE
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSI------QK-PRVIIM 75 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l------~~-advIi~ 75 (484)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.... +.. .+. -..+++.+...+ +. +|.+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~---~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP---NEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC---CCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4788886 9999999999999999999999998754211 100 011 123444443333 45 799988
Q ss_pred ecCCC
Q 011501 76 LVKAG 80 (484)
Q Consensus 76 ~vp~~ 80 (484)
+.|..
T Consensus 74 ~~~~~ 78 (285)
T TIGR03649 74 VAPPI 78 (285)
T ss_pred eCCCC
Confidence 87753
No 373
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.35 E-value=0.1 Score=52.72 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHHHHHHhhh---cCCCCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKQ---EGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~~~~~~~~---~~~~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+........ ...-.+....++.+.++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~--- 78 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD--- 78 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---
Confidence 358999999 999999999999854 58999999653 12211100000 000012233444444454
Q ss_pred CcEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ .. ++++...+..+..++.++|-.||
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999876332 11 12333455555555667777775
No 374
>PRK06182 short chain dehydrogenase; Validated
Probab=95.35 E-value=0.13 Score=50.23 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=54.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|..++|-|.|. |.+|..++..|++.|++|++.+|++++.+++... . ...+..-+.+
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~ 57 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTD 57 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCC
Confidence 55567888885 8999999999999999999999998776543321 0 2233333344
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.++.+++.+.....+=+++|++...
T Consensus 58 ~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 58 EASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 445555565555443334666666543
No 375
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.35 E-value=0.1 Score=50.07 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+...... .. .+..++..-+.+..
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEE 66 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHH
Confidence 35688887 69999999999999999999999998877665543210 00 00223333334444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++++.....+-++||++...
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 67 AINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5566666665555455777776543
No 376
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.33 E-value=0.061 Score=53.15 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=56.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++.... .++.+.+++ ||+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------------KNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 579999965 5899999999988 56888886432 245566666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+..+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 875433 24688999999998764
No 377
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.33 E-value=0.03 Score=55.90 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=58.5
Q ss_pred HHHHHHHhhcc-CcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 217 ELQQVFSEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 217 ~i~~~~~~~~~-g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
++.++++.|+. +.++|++++...+.+..+ ++ .+.++...||+ ++..|+++.|.+.|+|+|++..+++.++.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAED-PK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhhC-CC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 57788888986 458999999888877643 22 24667777774 3456999999999999999998877888887
Q ss_pred Cc
Q 011501 296 LK 297 (484)
Q Consensus 296 ~~ 297 (484)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 66
No 378
>PRK14851 hypothetical protein; Provisional
Probab=95.31 E-value=0.072 Score=59.00 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+..-+.-..+.+..+ .+++-|.+.+..-
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~i 122 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAGI 122 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecCC
Confidence 589999999999999999999997 688888765433333322100 0000000011122222222 2566666665542
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+-+..+ +..-++|||+..... ..-..+.+.+.+.++-++.+++.|
T Consensus 123 ~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 123 N-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred C-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 2 2223333 345589999987642 233345666777899898877654
No 379
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.29 E-value=0.3 Score=48.42 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=76.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.++|.+....+.+++|++.+.++ +++|..++.++.+.+ ..+|++++...+.+... +.. +
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~~-----~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TFK-----P 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CCC-----C
Confidence 3678899999999999999999999999774 459999999999876 45777776554333222 111 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 1221 1223456788889999999999999998866543
No 380
>PRK14030 glutamate dehydrogenase; Provisional
Probab=95.27 E-value=0.19 Score=52.69 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHHhhhcC--------CC-CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKQEG--------NL-PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~~~~~~~~~~--------~~-~~~~~~s~~e~ 63 (484)
.+|+|=|+|++|...|+.|.+.|.+|.+ || .+.++++.+.+.....+ ++ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999988 88 67666544433221110 00 11111 23343
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .||+.+-|--.+.-..+.++.|... +=++|+...|. | .+.+..+.|.++|+.|+..
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vPD 366 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAPG 366 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeCc
Confidence 332 4888887765543333333444221 34688888888 4 5556678889999988753
No 381
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.24 E-value=0.28 Score=51.96 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
||.|||+|..|.+.|+.|++.|++|.++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 799999999999999999999999999997654
No 382
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.24 E-value=0.13 Score=51.94 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=29.3
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 011501 6 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVE 44 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~ 44 (484)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 45654 56777776555554
No 383
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.23 E-value=0.22 Score=48.08 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-Cc-EEEEeCChhHH-----HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-FP-ISVYNRTTSKV-----DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
++||+|+|+ |+||+.+.+.+.+.. ++ +..++|.+... .++...+ .+++...+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999775 44 45678876532 1121111 1134445554444444 89988
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
=-+.+. .+...++-.+ ..+..+|-.+|...+.-.+..+.+.++ +..+-+|
T Consensus 75 DFT~P~-~~~~~l~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~-v~vv~a~ 124 (266)
T COG0289 75 DFTTPE-ATLENLEFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK-VPVVIAP 124 (266)
T ss_pred ECCCch-hhHHHHHHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 655432 4444444333 344555556666544444444444443 4334444
No 384
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=95.23 E-value=0.11 Score=47.96 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=46.6
Q ss_pred eEEEEcccHHHHHHH--HHHHhC----CCcEEEEeCChhHHHHHH---HHhhhcC--CCCeeecCCHhHHHhhcCCCcEE
Q 011501 5 RIGLAGLAVMGQNLA--LNIAEK----GFPISVYNRTTSKVDETV---ERAKQEG--NLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~~~---~~~~~~~--~~~~~~~~s~~e~~~~l~~advI 73 (484)
||+|||.|..-.+.- ..+... +-++..+|+++++++... +...+.. ..++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 799999999766532 223322 347999999999876432 2221111 2256778999999987 9999
Q ss_pred EEecCCC
Q 011501 74 IMLVKAG 80 (484)
Q Consensus 74 i~~vp~~ 80 (484)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998654
No 385
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.20 E-value=0.051 Score=55.32 Aligned_cols=90 Identities=12% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~ 75 (484)
.+||+|||. |..|..+.+.|.+.+|. +... .|+..+.-.+ .+ . .+.... +.++ ++. +|+||+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~-~~~---~D~vf~ 75 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDS-FDG---VDIALF 75 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHH-HcC---CCEEEE
Confidence 468999985 99999999999998873 3222 3333322111 11 1 122221 2233 344 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+|++ ...+....+ ...|..|||.|+..
T Consensus 76 a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 76 SAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred CCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 99987 444444433 24688999999764
No 386
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=95.20 E-value=0.16 Score=50.33 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHH---HccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKA---YDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~---~~~~~~~~~ll 397 (484)
.++++.+|+++|.+.++.++.++|++.+.++ .++|..++.++.+.+. -+|+.+...... ........+
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~-- 229 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNPVPGVMPQAPASNG-- 229 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCCCccccccccccCC--
Confidence 3788999999999999999999999998775 3499999999998763 356654422110 000000000
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
.++-|. +.-...+++.+...|-+.|+|+|....+...|...
T Consensus 230 ~~~~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 230 YQGGFG--TALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred CCCCcc--hHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 012221 22334566888999999999999998888766543
No 387
>PRK07877 hypothetical protein; Provisional
Probab=95.17 E-value=0.069 Score=59.41 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=73.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+| +|+..|..|++.|. +++++|.+.=....+..........+..-+...++-+..+ .+++-|.+++..-
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999 89999999999994 8888887653333333211000000000111222222222 2677777776652
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
..+.++++. ..-++||||+-.. ..-..+.+.+.++++-++.+...+|.
T Consensus 186 -~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g~ 233 (722)
T PRK07877 186 -TEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRGL 233 (722)
T ss_pred -CHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 233444444 3458999998875 33334556677788888877655443
No 388
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.17 E-value=0.11 Score=50.07 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=55.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE--EecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII--MLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi--~~vp~~ 80 (484)
+++-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++.+ .-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45778876 99999999999999999999999988776655432110 0 22222 222333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..++++++++.....+-+.+|++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 44555666655544455778887654
No 389
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=95.16 E-value=0.22 Score=52.62 Aligned_cols=109 Identities=13% Similarity=0.199 Sum_probs=64.6
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEec--CC
Q 011501 5 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 5 ~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~v--p~ 79 (484)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +.... ...+.++. +|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~~---~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLDD---ADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCCC---CCEEEECCCCCC
Confidence 4789999999998 999999999999999976543 22333221 33322 11223333 89888753 33
Q ss_pred Cc-hHHHHH---------HHHh-hhcC-CCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 80 GS-PVDQTI---------KTLS-VYME-KGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 80 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+. .+.... -+++ ..++ ...+-|-.|+++-.++.-+...+...|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 22 222221 1222 2222 2345566677776666666777777775
No 390
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=95.14 E-value=0.089 Score=54.65 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~i 121 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFRL 121 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEeccC
Confidence 589999999999999999999998 78899877543333332210 00000000011112222222 2566665554331
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
..+ -+.+ .+..=++|||++... ..-..+.+.+...++.|+.+.+.|-
T Consensus 122 ~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 122 DPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred Chh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 111 1222 234458999987653 4444456666778888888766543
No 391
>PRK07236 hypothetical protein; Provisional
Probab=95.11 E-value=0.028 Score=58.07 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4557899999999999999999999999999998864
No 392
>PRK06180 short chain dehydrogenase; Provisional
Probab=95.11 E-value=0.14 Score=50.09 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHH
Confidence 356888875 899999999999999999999999887655443210 00 122222333444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 5555555555444334677776544
No 393
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.08 Score=52.46 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=56.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ ||+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 57999996 55899999999988 6789987543 1245566666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-+..+. ..++++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 764322 24688999999998654
No 394
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.10 E-value=0.13 Score=50.48 Aligned_cols=103 Identities=10% Similarity=0.124 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcC--CCCeee-cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEG--NLPLYG-FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~--~~~~~~-~~s~~e~~~~l~~advIi~~vp 78 (484)
.+|.|||.|.+-...-.....+ |..|..+|++++..+...+...... +.++.. +.+..++...+...|+|+++--
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999876654433333 4568899999987665433222000 002333 3344444445556899999875
Q ss_pred CC---chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AG---SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~---~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+ ..-..+++.+...+++|..|+--+..
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 54 24568889999999999988876543
No 395
>PRK14852 hypothetical protein; Provisional
Probab=95.09 E-value=0.091 Score=59.75 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. .....+..-+....+.+..+ .+++=|.+.+..
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~- 410 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG- 410 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC-
Confidence 589999999999999999999997 68888876544333433210 00000001111222333322 267777777654
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pv~gg 133 (484)
...+.++++. ..=++|||+......++ ..+.+.+.+.++-++.+.+.|-
T Consensus 411 I~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 411 VAAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred CCHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 2233344443 34589999887643333 3455566778998988876543
No 396
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=94.96 E-value=0.3 Score=48.68 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=73.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHH-HH-HHHccCCCCCCccc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDR-IK-KAYDRNPDLANVLV 398 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~-i~-~~~~~~~~~~~ll~ 398 (484)
.++++.+|.+.|-+..+.+..++|++.+.++. + +|...+.++.+.+. ..+..+.. .. .++..+ .
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~----G--ld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~----- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL----G--LSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGD--L----- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcCc-ccChHHHccccchhccCC--C-----
Confidence 47889999999999999999999999998753 3 99999999988663 33433322 21 122111 1
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 399 DPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
++-| .++-...+++-+...|-+.|+|+|....+...|..
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1223 23334556788889999999999999988886654
No 397
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=94.94 E-value=0.19 Score=48.59 Aligned_cols=118 Identities=15% Similarity=0.278 Sum_probs=70.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEE--------EeCChhHHHHHHHHhhhcCCCCeeecC----------CH-hHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISV--------YNRTTSKVDETVERAKQEGNLPLYGFH----------DP-ESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~dr~~~~~~~~~~~~~~~~~~~~~~~~----------s~-~e~ 63 (484)
-+++.|-|.|.+|...|+.|.+.|.+|.+ ||.+.-.++++.+.....+. .+.... +. +++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEecccccc
Confidence 36899999999999999999999987664 46665555555543221110 011111 22 244
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .+|+++-|--.+.-..+.+.. .+++ -++|+...|.... .+..+.|.++|+.++..
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 432 499999996454333333331 2222 3688888887643 33345889999988754
No 398
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=94.93 E-value=0.67 Score=50.16 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=50.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-----cCC---CCeee----cCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-----EGN---LPLYG----FHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-----~~~---~~~~~----~~s~~e~~~~l~~a 70 (484)
+.|.|.|. |.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++.. ..+.+++.+.+.++
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggi 160 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNA 160 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCC
Confidence 35777875 9999999999999999999999999887665442110 000 01111 23444555555669
Q ss_pred cEEEEecCC
Q 011501 71 RVIIMLVKA 79 (484)
Q Consensus 71 dvIi~~vp~ 79 (484)
|+||.+...
T Consensus 161 DiVVn~AG~ 169 (576)
T PLN03209 161 SVVICCIGA 169 (576)
T ss_pred CEEEEcccc
Confidence 999988643
No 399
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.92 E-value=0.095 Score=51.96 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=56.3
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++.... .++++..++ ||+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------------------DDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 579999964 5899999999987 78899885431 245566666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-+.-+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 764322 24688999999998664
No 400
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.92 E-value=0.043 Score=55.59 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 2 VQTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 2 ~~~~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
..++|+|||. |..|.-|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. ++.+|++|+|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 3579999996 9999999999998544 45444332211111110010 12222 344332 12389999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|.+ ...++...+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 987 4444444432 4689999999764
No 401
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.90 E-value=0.082 Score=53.41 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 37 (484)
+|+|||+ |.+|..+|..|+..+. ++.++|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999997654 5999999654
No 402
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=94.89 E-value=0.038 Score=56.19 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~ 79 (484)
+|+||| .|..|..|.+.|.+++|++. .+.++.+.-+.+.-.+. .+... .+.+++ +. +|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 589999 69999999999999888643 44444332222211111 12221 122333 33 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ...+....+ +..|..|||.|+..
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 7 444444443 34678999998753
No 403
>PRK07326 short chain dehydrogenase; Provisional
Probab=94.88 E-value=0.16 Score=48.12 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 46888874 999999999999999999999999877666544
No 404
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.87 E-value=0.24 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|..++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 33467889987 99999999999999999999999977655543
No 405
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=94.85 E-value=0.2 Score=52.05 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccHHHHHHHH-H-HHh----CCCcEEEEeCChhHHHHHH---HHhhh-cC-CCCeeecCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAGLAVMGQNLAL-N-IAE----KGFPISVYNRTTSKVDETV---ERAKQ-EG-NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~-~-L~~----~G~~V~v~dr~~~~~~~~~---~~~~~-~~-~~~~~~~~s~~e~~~~l~~ 69 (484)
|++.||+|||.|..+.+.-. . |.+ .+.++..||.++++.+... +...+ .+ ..++..++|.+++++.
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG--- 77 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---
Confidence 66779999999998766422 2 222 2458999999998866321 11111 10 1257788999999888
Q ss_pred CcEEEEecCCC
Q 011501 70 PRVIIMLVKAG 80 (484)
Q Consensus 70 advIi~~vp~~ 80 (484)
+|+|+.++-.+
T Consensus 78 AdfVi~~~rvG 88 (442)
T COG1486 78 ADFVITQIRVG 88 (442)
T ss_pred CCEEEEEEeeC
Confidence 99999998544
No 406
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.85 E-value=0.23 Score=52.82 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=74.4
Q ss_pred CeEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh--------c------CCC--Ceeec
Q 011501 4 TRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ--------E------GNL--PLYGF 57 (484)
Q Consensus 4 ~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~--------~------~~~--~~~~~ 57 (484)
++|+|+|+ ..-...++..|.+.|.+|.+||.--+..+. .+.... . .+. .+..+
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQI-QRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHH-HHHhhcccccccccccccccccccccceeee
Confidence 58999998 346788999999999999999986433211 111100 0 000 13556
Q ss_pred CCHhHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 58 HDPESFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 58 ~s~~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.++.+.++. +|+||+++..+ ..+.. .+.+...+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 404 ~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 404 WDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 677777776 99999999886 34432 34555555555589999988742 22335588887754
No 407
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.84 E-value=0.096 Score=53.36 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=55.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHHhhh-----cCC-C-CeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKQ-----EGN-L-PLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~~~~~~~~-----~~~-~-~~~~~~s~~e~~~~l~~advI 73 (484)
+||+|+|. |.||..+++.|.++. +++... +++.+..+.+...... ..+ + .+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999998876 476655 5543322222211100 000 0 0111111112223 49999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|+|.+ ....+...+ ...|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 9999987 333444333 34688899998764
No 408
>PRK07454 short chain dehydrogenase; Provisional
Probab=94.83 E-value=0.17 Score=48.16 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677887 4999999999999999999999999877665543
No 409
>PRK12828 short chain dehydrogenase; Provisional
Probab=94.82 E-value=0.28 Score=46.38 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=54.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888874 9999999999999999999999998765544332110 01 2344444444455
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+..+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666665544444677776543
No 410
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.78 E-value=0.23 Score=47.75 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|+|-|+|. |.+|..++..|+++|++|.+.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 47888884 89999999999999999999999988765544
No 411
>PRK06153 hypothetical protein; Provisional
Probab=94.77 E-value=0.22 Score=51.04 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh-h-hcCCCCe--eecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-K-QEGNLPL--YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~-~-~~~~~~~--~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . .....+. .-+...++.+..+ .+++. +.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i-n~~I~--~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM-RRGIV--PHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh-CCeEE--EEe
Confidence 589999999999999999999997 7888887643222222211 0 0000000 0011122222222 13443 333
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
.. ...+.+. .+..-++|++|.-... .-..+.+.+.+.++-|+++++.
T Consensus 254 ~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 254 EY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred ec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 22 1112222 3445689999887643 2233456667789999987643
No 412
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.19 Score=48.03 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=55.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 56888886 99999999999999999999999987665544322110 000 1222223334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 566666665555445788887664
No 413
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.75 E-value=0.5 Score=44.61 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=51.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|..|..=++.|++.|-+|+++..+. +....+...+.-. -+...-+++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999998776 4444544433200 011122333333 389999999876 4
Q ss_pred HHHHH
Q 011501 83 VDQTI 87 (484)
Q Consensus 83 v~~vl 87 (484)
+.+-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 55444
No 414
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.74 E-value=0.11 Score=50.16 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
+++|.|+| .|.+|..++..|+++|++|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 46899999 59999999999999999999999998775543
No 415
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=94.70 E-value=0.16 Score=48.94 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=80.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHHhhhcC-C--CCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKQEG-N--LPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~~~~~~~~~~-~--~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
..++|.|.....+-....+.- .+|.+|+|+++...++.+...+.. . ..+..+.+.++++.. +|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~atls 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGATLS 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecccc
Confidence 678999999988776655432 389999999999888877543321 0 024567788888887 9999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...+- ..++++||+- ||.-.+.-+...+....+-+.+..|+|..
T Consensus 218 tePil-----fgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 218 TEPIL-----FGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDSR 261 (333)
T ss_pred CCcee-----eeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEecc
Confidence 64321 2356778854 45544444566677777777788898874
No 416
>PRK07890 short chain dehydrogenase; Provisional
Probab=94.69 E-value=0.19 Score=48.29 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+.++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDE 66 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCH
Confidence 345777887 589999999999999999999999987766554432110 000 22333333444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 67 DQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHHHcCCccEEEECCcc
Confidence 45666666665544444677776543
No 417
>PRK05866 short chain dehydrogenase; Provisional
Probab=94.68 E-value=0.21 Score=49.53 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+|..|+++|++|++.+|+.++.+++.+..... ... ...+-.-+.+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 46778875 99999999999999999999999988776655432110 000 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666665544444777776543
No 418
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=94.64 E-value=0.2 Score=50.79 Aligned_cols=38 Identities=16% Similarity=0.397 Sum_probs=32.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDE 41 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~ 41 (484)
|+|.|.|. |.+|+.++..|+++ |++|.+.+|+.++...
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~ 41 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD 41 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 58999996 99999999999986 7999999998765443
No 419
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.64 E-value=0.042 Score=57.23 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.+.|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
No 420
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.64 E-value=0.48 Score=50.45 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++|+|+|+|.-|.+.|+.|.+.|.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 589999999999999999999999999999543
No 421
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=94.63 E-value=0.24 Score=52.06 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=50.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---Hhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETVE---RAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~~~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||.|.. +-.+...|+.. +-+|..+|.++++.+.... +..+. + ..++..++|.+++++. ||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 58999999985 22344444433 3589999999987655322 11111 1 2257788899998887 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||..+-.+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
No 422
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=94.61 E-value=0.14 Score=50.67 Aligned_cols=120 Identities=11% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|+|+|-+|..+|++|+.+|. +++++|.+.-....+..+-- .+...+-.-+....+-++++. +++-|......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999997 69999977644433322100 000000000111112222222 55555555432
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
...+ .+.+=++||++.. .+....++.+.+.+.++.|+.+...|
T Consensus 98 -~~~~-------~l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTTD-------ELLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCHH-------HHhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1111 1233468888754 55666667778888899888876543
No 423
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.21 Score=48.91 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCC-CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQ-TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~-~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|.+ ++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 1 m~~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 543 35777776 99999999999999999999999988765543
No 424
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.60 E-value=0.2 Score=49.95 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=74.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|+..+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 589999999989999999999999999976553211 111 25667778887776 9999999886311
Q ss_pred --HHHH-------H-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 --VDQT-------I-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+... + .+++..++++.+++ .+...|.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 1111 1 35667788897555 45555442 244668899888654
No 425
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=94.60 E-value=0.24 Score=47.84 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 36 (484)
..+|.|||+|..|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 358999999999999999999874 2889998764
No 426
>PRK08163 salicylate hydroxylase; Provisional
Probab=94.57 E-value=0.045 Score=56.63 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=33.4
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+ .++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 43 35899999999999999999999999999999864
No 427
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.57 E-value=0.24 Score=47.47 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=70.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-.....+-+..+ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 889998775333333322100 0000000011112222222 256666665433
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
-..+.+..+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~~--~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLLG--GDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 11122223321 2358999986654 344556777778888888864333
No 428
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=94.48 E-value=0.26 Score=48.09 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=56.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++++-|-|+ +-+|..+|+.|+++|++|++..|+.++++++.++..... . ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--------~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--------G----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--------C----ce----EEEEECcCCChh
Confidence 446777786 889999999999999999999999999999887654210 0 01 333333334445
Q ss_pred hHHHHHHHHhhhcCCCCEEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~ 103 (484)
.+..+.+++.....+=+++|++
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEEC
Confidence 5666666665542233566665
No 429
>PRK08309 short chain dehydrogenase; Provisional
Probab=94.48 E-value=0.49 Score=43.40 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
|++.|+|...||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888887678888999999999999999999887665543
No 430
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.47 E-value=0.14 Score=51.19 Aligned_cols=80 Identities=10% Similarity=0.232 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.||+|+|. |..|.-|.+.|.++.+ ++.....+.. + . ..+.+++.+. +|++|+|+|++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~------------~-~~~~~~~~~~---~D~vFlalp~~- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K------------D-AAERAKLLNA---ADVAILCLPDD- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c------------C-cCCHhHhhcC---CCEEEECCCHH-
Confidence 48999985 9999999999998854 3332221111 0 0 1244455555 89999999998
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+.+..+ ...|..|||.|+..
T Consensus 61 ~s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 61 AAREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---HhCCCEEEECChHH
Confidence 444444443 24688999999754
No 431
>PRK12939 short chain dehydrogenase; Provisional
Probab=94.45 E-value=0.24 Score=47.22 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888885 899999999999999999999999887665543
No 432
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.42 E-value=0.14 Score=50.57 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHh----CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.+ ++..|++++.+.. ++.+.++. ||+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~---------------------~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP---------------------DLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 579999965 589999999998 6788998875421 34555666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 774322 13568999999998654
No 433
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.41 E-value=0.51 Score=45.75 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=71.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+..... ++ .+...+...-...|+|+...... .
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~---~~~~~~~~~~~~fD~Vvani~~~-~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GV---ELNVYLPQGDLKADVIVANILAN-P 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CC---CceEEEccCCCCcCEEEEcCcHH-H
Confidence 4788999998 6 455566777765 999999999887766543322 11 00001111000278888765433 5
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..++.++...+++|..++-.+.. ......+.+.+.+.|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~-~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL-EEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-HhhHHHHHHHHHHCCCEEEE
Confidence 667778888889888777654333 34555667777777876654
No 434
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.38 E-value=0.15 Score=52.59 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..++.+|++.|. +++++|.+.=....+..+.. .....+..-+....+-+..+ .+++-+...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 579999999999999999999997 89999987543333332110 00000000011112222222 2555555554331
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..+.+.+ .+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 121 -~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 -TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred -CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1222223 334558999998763 333344556677788888776553
No 435
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.37 E-value=0.36 Score=45.74 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=35.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888875 889999999999999999999999887766543
No 436
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.35 E-value=0.28 Score=47.17 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE 52 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888874 999999999999999999999999877655443
No 437
>PRK08219 short chain dehydrogenase; Provisional
Probab=94.31 E-value=0.17 Score=47.54 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|++++|-|.|. |.+|..++..|+++ ++|++.+|+++..+.+.
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 55567888874 99999999999999 99999999987765554
No 438
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=94.31 E-value=0.35 Score=46.28 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=58.1
Q ss_pred EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC--
Q 011501 29 ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-- 106 (484)
Q Consensus 29 V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 106 (484)
|.+||+++++.+.+.+.. ++..+++++++++. .+|+|++|.|+..+.+. .... ++.|.-++-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~H~e~-a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEAVKEY-AEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHHHHHH-HHHH---HHCCCCEEEECCccc
Confidence 568999999988887654 25678899998752 49999999999854433 3333 3445433335543
Q ss_pred -ChHHHHHHHHHHHHcCCeEEe
Q 011501 107 -WYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 107 -~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.....+++.+..++.|..+.-
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYI 94 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEE
Confidence 345566777777777765543
No 439
>PLN00016 RNA-binding protein; Provisional
Probab=94.30 E-value=0.31 Score=50.21 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCeEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 3 QTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 3 ~~~IgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
+++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3689999 6 6999999999999999999999998765
No 440
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.29 E-value=0.23 Score=47.39 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35788888 6999999999999999999999999876655443
No 441
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.28 E-value=0.27 Score=50.22 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCC----HhHHH-hhc--CCCcEEEEe
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHD----PESFV-HSI--QKPRVIIML 76 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s----~~e~~-~~l--~~advIi~~ 76 (484)
++.|+|+|.+|...+..+...|. +|++.|+++++++.+.+.+... ..... ..+.+ +.. ..+|++|.|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 58999999999998887878885 7888899999988776644321 11111 11111 111 237788887
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.... .+++....++++-.++..+..
T Consensus 246 ~G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 VGSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 76432 333444445555555554444
No 442
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.34 Score=47.38 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|+.++|-|.| .|.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 44 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLA 44 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5555687887 599999999999999999999999988766544
No 443
>PRK07024 short chain dehydrogenase; Provisional
Probab=94.27 E-value=0.24 Score=47.82 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=54.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 5777776 6899999999999999999999999887665543211 00 0 1 2233333334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++.++++.....+-+++|++...
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 556666655544444777776543
No 444
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.22 E-value=0.17 Score=50.21 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=54.7
Q ss_pred CeEEEEccc-HHHHHHHHHHHh----CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|.|||-+ .+|.++|..|.+ .|..|+++..+.. ++++.+.. ||+||.+++
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~---------------------~l~~~~~~---ADIvI~Avg 215 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK---------------------DIPSYTRQ---ADILIAAIG 215 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 579999964 589999999987 6889998875532 34455666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 216 ~~~li~------~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 216 KARFIT------ADMVKPGAVVIDVGINR 238 (295)
T ss_pred ccCccC------HHHcCCCCEEEEeeccc
Confidence 653211 23468999999998654
No 445
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=94.18 E-value=0.38 Score=47.16 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=67.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|+..|.+|++.|. +++++|.+.-....+..+... ....+-.-+.-..+-+..+ .+++-+..++..-
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~i 109 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDFI 109 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEeccc
Confidence 589999999999999999999994 899998775443333221100 0000000000111222221 2566555554321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
..+-+..+.. ..-++|||+.-.. ..-..+.+.+.+.++.++.+.
T Consensus 110 -~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 110 -TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred -ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1122223321 2357899987653 334456777788888888764
No 446
>PRK08265 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.4 Score=46.46 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=34.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45767775 899999999999999999999999876665543
No 447
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=94.11 E-value=0.39 Score=45.83 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEe-----c
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIML-----V 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~-----v 77 (484)
++|.=||+| |..|+.-|++.|..|++.|.+++.++.........+ ..+ -...+.+++...-+.-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 467778888 568999999999999999999998877664433221 111 1234666666532457888775 3
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
|++ +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 45677777778887666543
No 448
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.09 E-value=0.6 Score=49.54 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 81 (484)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+... . .... ....+.... +|+||.+- |...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYS-K---NAIA-ALSDSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhc-C---ceec-cCChhHhhC---CCEEEECCCCCCCC
Confidence 58999999999999999998 49999999965443322221100 0 1111 112233333 88887753 3322
Q ss_pred h-HHHHH---------HHHh-hhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 P-VDQTI---------KTLS-VYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. +.... -+++ ..... ..+-|-.|+++-.++.-+...+...|..+.-++..|.
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~ 141 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV 141 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCH
Confidence 2 22111 1222 22222 2344556666655566667777777766554444443
No 449
>PRK07825 short chain dehydrogenase; Provisional
Probab=94.09 E-value=0.42 Score=46.53 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356888875 889999999999999999999999887766543
No 450
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=94.07 E-value=0.063 Score=55.40 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=33.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC---CCcEEEEeCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK---GFPISVYNRT 35 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~---G~~V~v~dr~ 35 (484)
|++.+|.|||.|..|..+|..|+++ |++|.++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 7778999999999999999999998 9999999995
No 451
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=94.07 E-value=0.35 Score=46.51 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|+++|++|.+++|+++..+.+.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 56777765 889999999999999999999999877665544
No 452
>PRK07109 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.35 Score=49.07 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=54.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE--EEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI--IMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI--i~~vp~~ 80 (484)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+..... . .++. ..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 35777775 88999999999999999999999988776655432110 0 2222 2223344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 45666666665555455777776543
No 453
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.02 E-value=0.92 Score=47.75 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~ 79 (484)
++|.|||+|..|.+.+..|++.|++|+++|..+.. .+.+. .+. .+.......+.++. .|+||.+- |.
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~~ 77 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENV-----ERHTGSLNDEWLLA---ADLIVASPGIAL 77 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCC-----EEEeCCCCHHHhcC---CCEEEECCCCCC
Confidence 47999999999999999999999999999975432 22221 111 12111222233443 78766643 22
Q ss_pred C-chHHHHH---------HHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 G-SPVDQTI---------KTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~-~~v~~vl---------~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+ ..+.... .++...+.. ..+-|-.|++.-.++.-+...|...|..+.
T Consensus 78 ~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 78 AHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred CCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 2 1122211 123322222 234466666765566666777777776543
No 454
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.00 E-value=0.35 Score=46.66 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=54.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..+|+.|+++|++|++.+|++++.+.+.+.... .-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--------------LGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEEccCCCHHH
Confidence 5677887 59999999999999999999999998776554432210 0000 2222223334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++..++.+.....+=+.||++...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 555566655544444677777543
No 455
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=94.00 E-value=0.08 Score=53.45 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 40 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 40 (484)
++|||||-|..|.-|+..-.+-|++|++.|.+++.-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 5899999999999999999999999999998887543
No 456
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=93.99 E-value=0.45 Score=46.03 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 45667765 789999999999999999999999887666543211 00 1222223333345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 556666655544444677776653
No 457
>PRK07074 short chain dehydrogenase; Provisional
Probab=93.99 E-value=0.49 Score=45.54 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778876 899999999999999999999999887766554
No 458
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.97 E-value=0.13 Score=52.20 Aligned_cols=89 Identities=13% Similarity=0.238 Sum_probs=55.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE-KGFP---ISVYNRT--TSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~ 75 (484)
++|||||. |..|..|.+.|.+ ..++ +..+... ..+.-.+.. . .+... .+++++ .. .|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~---~----~l~v~~~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG---R----EIIIQEAKINSF-EG---VDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC---c----ceEEEeCCHHHh-cC---CCEEEE
Confidence 58999996 9999999999995 5666 4444332 222111111 0 12221 244444 44 899999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|.+ ...++...+ ...|..|||.|+..
T Consensus 75 a~~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 99887 444444443 34689999999765
No 459
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.97 E-value=0.23 Score=41.19 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..+|.|||.|.+|..=++.|.+.|.+|+++.++.+. .+. .++.. ...++. +..+++|+.++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~----~~~-------~i~~~~~~~~~~---l~~~~lV~~at~d~- 71 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF----SEG-------LIQLIRREFEED---LDGADLVFAATDDP- 71 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH----HHT-------SCEEEESS-GGG---CTTESEEEE-SS-H-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh----hhh-------HHHHHhhhHHHH---HhhheEEEecCCCH-
Confidence 357999999999999999999999999999988611 111 12221 222333 34489999888665
Q ss_pred hHHHHHHH
Q 011501 82 PVDQTIKT 89 (484)
Q Consensus 82 ~v~~vl~~ 89 (484)
.+...+..
T Consensus 72 ~~n~~i~~ 79 (103)
T PF13241_consen 72 ELNEAIYA 79 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
No 460
>PRK08013 oxidoreductase; Provisional
Probab=93.93 E-value=0.068 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+..+|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5556899999999999999999999999999999875
No 461
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=93.92 E-value=0.83 Score=47.87 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=49.5
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHH---HHhhhc-C-CCCeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQ-NLALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKQE-G-NLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~~~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~ad 71 (484)
|||+|||.|..-+ .+...|+.. +-+|..+|++ +++++... ++..+. + ...+..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999999643 344455542 3589999999 78764422 111111 0 2257778899998887 99
Q ss_pred EEEEecCCC
Q 011501 72 VIIMLVKAG 80 (484)
Q Consensus 72 vIi~~vp~~ 80 (484)
+||+++-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
No 462
>PRK09126 hypothetical protein; Provisional
Probab=93.92 E-value=0.069 Score=55.13 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+..+|.|||.|.-|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6667899999999999999999999999999998764
No 463
>PRK08017 oxidoreductase; Provisional
Probab=93.91 E-value=0.39 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 46889997 9999999999999999999999998776544
No 464
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.41 Score=45.69 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=35.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~ 43 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT 43 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 3566776 6999999999999999999999999888776654
No 465
>PRK05867 short chain dehydrogenase; Provisional
Probab=93.86 E-value=0.34 Score=46.58 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=34.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+.+-|.|. |.+|..++..|++.|++|.+.+|++++.+.+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 35667775 889999999999999999999999887766554
No 466
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=93.85 E-value=0.092 Score=40.07 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 8 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
No 467
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.84 E-value=0.066 Score=56.37 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+.++++|||+|.-|.+.|++|.+.|++|.++.|+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 356899999999999999999999999999999865
No 468
>PRK05868 hypothetical protein; Validated
Probab=93.83 E-value=0.075 Score=54.77 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=32.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998875
No 469
>PRK07814 short chain dehydrogenase; Provisional
Probab=93.82 E-value=0.39 Score=46.55 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=54.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 46777765 6799999999999999999999998776655443210 0000 1222233444445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++.+...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444467777654
No 470
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.82 E-value=0.12 Score=40.63 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998765
No 471
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.81 E-value=0.71 Score=48.46 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=51.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHH---HHhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~~~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.. .-.+...|+.. +-+|..+|.++++.+... ++..+. + .+++..++|.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999984 33455555543 358999999998765432 111111 1 2357788899999887 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
No 472
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.80 E-value=0.081 Score=54.66 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=33.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|...+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 655689999999999999999999999999999764
No 473
>PRK07411 hypothetical protein; Validated
Probab=93.79 E-value=0.22 Score=51.64 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=70.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+-+..+ .+++-|.+.+..-
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~~ 117 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETRL 117 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEeccc
Confidence 589999999999999999999998 78889877543333322110 00000000111122222222 2566666655431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+... ..+..-++|||++-.. ..-..+.+.+.+.++.++.+.+.|-
T Consensus 118 ~-~~~~~---~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 118 S-SENAL---DILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred C-HHhHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 1 11122 2344568999997764 3333345566677888887776654
No 474
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=93.75 E-value=0.49 Score=45.58 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|.+|..+|+.|+++|++|.+.+|+.+..+.+.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3577777 5999999999999999999999999887665543
No 475
>PRK06172 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.4 Score=46.00 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=34.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|++.|++|.+.+|+++..+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888875 889999999999999999999999887665544
No 476
>PRK06753 hypothetical protein; Provisional
Probab=93.74 E-value=0.08 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=32.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
|+|.|||.|.-|..+|..|+++|++|+++++++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999988753
No 477
>PRK06139 short chain dehydrogenase; Provisional
Probab=93.74 E-value=0.41 Score=48.51 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE--EEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRV--IIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv--Ii~~vp~~ 80 (484)
+.|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.++.... . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 35767776 88999999999999999999999988877665432110 0 222 22234444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++.+++.+.....+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56666666665544344777777543
No 478
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.74 E-value=0.079 Score=54.26 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|++.+|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 555679999999999999999999999999999874
No 479
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.5 Score=46.04 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+... . .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHHH
Confidence 46777774 8899999999999999999999998765543321 0 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 556666655444344677776653
No 480
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=93.70 E-value=1.6 Score=40.12 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=76.4
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCchHHHHHH
Q 011501 10 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGSPVDQTIK 88 (484)
Q Consensus 10 GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~ 88 (484)
|+|.++--+| ++...-+|+..|++++.++.......+-+..++.. ..+..+....+.++|.||+-=. ..++.+++
T Consensus 44 GtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~i~~ile 119 (187)
T COG2242 44 GTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GNIEEILE 119 (187)
T ss_pred CccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CCHHHHHH
Confidence 4556666666 44445689999999988766554332211002222 2344455556667999999865 47899999
Q ss_pred HHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCC-eEEeccCCCC
Q 011501 89 TLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGL-LYLGMGVSGG 133 (484)
Q Consensus 89 ~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~i~~pv~gg 133 (484)
....++++| .+|++..|. ++.....+.+++.|+ ..+-.-++-+
T Consensus 120 ~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 120 AAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred HHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 999888775 677777765 466667778888888 5555444433
No 481
>PRK12829 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.55 Score=45.21 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=34.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..++..|+++|++|.+.+|+++..+.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888875 999999999999999999999999876655543
No 482
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.66 E-value=0.27 Score=46.75 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++.|.|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888987 899999999999999999999999887665543
No 483
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=93.65 E-value=0.085 Score=54.94 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4899999999999999999999999999999754
No 484
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=93.64 E-value=0.5 Score=45.72 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=33.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45667764 78999999999999999999999987766554
No 485
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.64 E-value=0.44 Score=45.44 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=35.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++.|+|. |.+|..+++.|+++|+.|++.+|++++.+...+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~ 47 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVA 47 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888987 999999999999999999999999877655543
No 486
>PRK06196 oxidoreductase; Provisional
Probab=93.63 E-value=0.54 Score=47.06 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+... . ...+-.=+.+...
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------------------~---v~~~~~Dl~d~~~ 85 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------------------G---VEVVMLDLADLES 85 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------------------h---CeEEEccCCCHHH
Confidence 45777775 889999999999999999999999887665443210 0 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|++..
T Consensus 86 v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 86 VRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred HHHHHHHHHhcCCCCCEEEECCC
Confidence 55666665554334466666654
No 487
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=93.63 E-value=0.41 Score=46.28 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=53.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|++-|.|. |.+|..+|+.|+++|++|++.+|++++.++..++.... .. ...+-.-+.+.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 47888875 77999999999999999999999988766554432100 00 1122222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666554444467776544
No 488
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.60 E-value=0.38 Score=45.88 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=35.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..+++.|+++|++|++.+|++++.+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889985 899999999999999999999999877665543
No 489
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.59 E-value=0.81 Score=48.25 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHHhhhcCCCCeee--c-CCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKQEGNLPLYG--F-HDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~--~-~s~~e~~~~l~~advIi~~ 76 (484)
++|.|||+|..|.+-+..|.+. |++|+++|.++.. .+.+.+ + +.. . .+++. +.+ +|+||.+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~~-~~~---~d~vV~S 75 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLEW-LLE---ADLVVTN 75 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChHH-hcc---CCEEEEC
Confidence 5799999999999999999987 5899999976532 122321 1 222 2 23333 344 8988775
Q ss_pred c--CCCch-HHHHH---------HHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 77 V--KAGSP-VDQTI---------KTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 77 v--p~~~~-v~~vl---------~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
- |.... +.... -+++. .++...|-|-.|+++-.++.-+...+...|..+.-.+..|.
T Consensus 76 pgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~ 145 (438)
T PRK04663 76 PGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGV 145 (438)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCH
Confidence 4 33222 22211 13332 22323344555666655555566677777765443333333
No 490
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.56 E-value=0.46 Score=48.85 Aligned_cols=114 Identities=16% Similarity=0.270 Sum_probs=67.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHHhhhcC---C-CCeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--------KVDETVERAKQEG---N-LPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~~~~~~~~~~---~-~~~~~~~s~~e~~~~l~~ad 71 (484)
++|+|=|.|++|..+|+.|.+.|.+|.+++-+.. ..+.+.+.....+ + .+.+..+. +++... .||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999988865554 1111111000000 0 01223323 444432 388
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+-|--...-..+-+.. +.. ++|+...|.. .+.+..+.+.++|+-|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 887765444322233333 322 3788888774 445666677789987764
No 491
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=93.55 E-value=1.3 Score=41.21 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=67.6
Q ss_pred CeEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC-CCCeee-cCCHhHHHhhc-CCCcEEEEecC
Q 011501 4 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLPLYG-FHDPESFVHSI-QKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~-~~s~~e~~~~l-~~advIi~~vp 78 (484)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++.+.+.....+ ..++.. ..+..+....+ ...|.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 3577888866 333333332 234579999999988776544322110 002222 23444544333 35899998654
Q ss_pred CCchHHHHHHHHhhhcCCCCE-EEecCCCChHHHHHHHHHHHHcCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDC-IIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~ 123 (484)
.. ....+++.+...+++|-. +++.. ......+..+.+++.|+
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 121 SE-KLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 33 567788888888887655 44443 34556666677777775
No 492
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=93.54 E-value=0.29 Score=49.06 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=68.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+-. .....+-.-.....+.++.+ .+++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc--
Confidence 58999999999999999999997 78999987654444432210 00000000011112222222 145555544322
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.+. ......+..=++||++.-. +..-..+.+.+...++.|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011234455788888654 3443446667778899999987665
No 493
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.53 E-value=0.086 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999999765
No 494
>PLN03075 nicotianamine synthase; Provisional
Probab=93.52 E-value=0.9 Score=45.11 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=66.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCC--Ceeec-CCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNL--PLYGF-HDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~~-~s~~e~~~~l~~advIi~~v 77 (484)
..+|..||+|..|..-...++.+ +-+++.+|++++..+..++......++ +++.. .+..+....+.+.|+|++.+
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~A 203 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAA 203 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEec
Confidence 35899999999876554444433 236999999999887666544221011 23322 23334332244589999986
Q ss_pred C---CCchHHHHHHHHhhhcCCCCEEEecC
Q 011501 78 K---AGSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 78 p---~~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
- +...-..+++.+...+++|.+++-.+
T Consensus 204 Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 204 LVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 2 11345788899999999999888776
No 495
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=93.51 E-value=0.71 Score=44.74 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.++-|+|.|..+.++++.+...||+|+++|.+++......-... .......+++....+...+.|++++-+. ..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~ 174 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-AL 174 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-HH
Confidence 58999999999999999999999999999977652211100000 0122344566655444467777777544 33
Q ss_pred H-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 D-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+ .++..+++. ...-+|-+=.+. ....++.+.+.+.|+
T Consensus 175 D~~~L~~aL~~--~~~~YIG~lGSr-~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRR--GDFAYFGLIGSK-TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhC--CCCcEEEEeCCH-HHHHHHHHHHHhcCC
Confidence 3 444444421 222233332222 345566667766664
No 496
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.50 E-value=0.66 Score=44.75 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=35.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|+| .|.+|..+++.|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688887 5889999999999999999999999887776654
No 497
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.58 Score=45.60 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=53.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999877665543210 01 2222233334444
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=++||++...
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555554444444677776543
No 498
>PRK08643 acetoin reductase; Validated
Probab=93.43 E-value=0.46 Score=45.68 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+.+...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 566665 58899999999999999999999998776655443210 0000 11122223444456
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665544444677777654
No 499
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.34 Score=47.08 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=52.6
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+ .++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.. .. ..++..=+.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~----------------------~~---~~~~~~D~~ 55 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI----------------------PG---VELLELDVT 55 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc----------------------CC---CeeEEeecC
Confidence 54 34577776 58999999999999999999999986543210 01 223333333
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+...++.+++.+.....+-+++|++...
T Consensus 56 d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 56 DDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 4455666666665555555777777654
No 500
>PRK06949 short chain dehydrogenase; Provisional
Probab=93.39 E-value=0.61 Score=44.77 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|++.|++|++.+|++++.+.+..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888875 999999999999999999999999887766554
Done!