BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011502
(484 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1CYS1|ATG26_NEOFI Sterol 3-beta-glucosyltransferase OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg26
PE=3 SV=1
Length = 1418
Score = 36.6 bits (83), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 65/150 (43%), Gaps = 24/150 (16%)
Query: 6 NQQKNGVDRHTSSHRKKGSNS---GSAVPDMAGQGRDGKVKVFPGDELPNGSHSG----- 57
+ K VDR S+ R+ S S SA+PD D +V F +GS G
Sbjct: 6 DDAKRRVDRKLSASRQSLSTSRLLPSALPDRLKDNHDAQVD-FTAPPGGSGSREGHLQYM 64
Query: 58 -------IPSADSSSDDHHAGDESIRKN-NAEASPRREKQGTDTRRDLGQSVSSETSETI 109
I + S SD H DES + +E PR+E + R+ G S S+ TS +
Sbjct: 65 QQSIFGMIAAVGSRSDFHARFDESSDSDGESEQRPRKE---SSVRK--GTSASANTSSPL 119
Query: 110 AGDSTDNISSRETCGVRIENARRGRKHRKT 139
DS+ SSR E+ RGR+H +T
Sbjct: 120 --DSSQRSSSRTDGKSEKESGTRGRRHPRT 147
>sp|P41820|BFR1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bfr1 PE=1 SV=1
Length = 1530
Score = 35.4 bits (80), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 52/114 (45%), Gaps = 24/114 (21%)
Query: 224 LLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL---------- 273
L++ ++ D + +D F R G FFS+++C++ S+ + MF ++
Sbjct: 553 LIIGSIFYDMKLNTVDVFSRGGVL-FFSILFCALQSLSEIANMFSQRPIIAKHRASALYH 611
Query: 274 ----VVAALVAFFIGFALALVVVALSGTILLWLY------GSFWTTFFVIFLGG 317
V+++L+ + + +++ +L +L G FWT F +F+G
Sbjct: 612 PAADVISSLI---VDLPFRFINISVFSIVLYFLTNLKRTAGGFWTYFLFLFIGA 662
>sp|Q5BF53|GWT1_EMENI GPI-anchored wall transfer protein 1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=gwt1 PE=3 SV=1
Length = 474
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Query: 329 LFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQA 388
LF TT YS WL LNL VS A + + S+ + +T + P QT+ Q
Sbjct: 68 LFATTFYS------SAPWL-----LNLLLVS-PAFLILMNSRSRRTQTKAKPPQTATAQH 115
Query: 389 GPSFSNGEPVHP 400
GP S P+HP
Sbjct: 116 GPGAS--LPIHP 125
>sp|P08004|CHS1_YEAST Chitin synthase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CHS1 PE=1 SV=2
Length = 1131
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGS 305
T FF + + +++S ++ F +L V+ +A+ F + V I LWLYG
Sbjct: 792 TVEFFYLFFNTLISWFSLSSFFLVFRILTVSIALAYHSAFNVLSV-------IFLWLYGI 844
Query: 306 FWTTFFVIFLGGL---AFKFTHERLALFITTM-YSIYCA 340
+ F++ LG KF +F M Y I+C+
Sbjct: 845 CTLSTFILSLGNKPKSTEKFYVLTCVIFAVMMIYMIFCS 883
>sp|Q00555|CFTR_SHEEP Cystic fibrosis transmembrane conductance regulator OS=Ovis aries
GN=CFTR PE=1 SV=2
Length = 1481
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 264 VGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323
+ + K LM +++ LV F + A +LVV+ L ILL G+ + K
Sbjct: 853 ITVHKSLMFVLIWCLVVFLVEVAASLVVLCLFPKILLQDKGN-------------STKNA 899
Query: 324 HERLALFITTMYSIYCAWTYVGWLGLLLALNL 355
A+ IT+ S Y + YVG LLAL L
Sbjct: 900 SNSYAVIITSTSSYYIFYIYVGVADTLLALGL 931
>sp|P0C6X8|R1AB_CVM2 Replicase polyprotein 1ab OS=Murine coronavirus (strain 2) GN=rep
PE=3 SV=1
Length = 7124
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 20/95 (21%)
Query: 264 VGMFKFLMVLVVAALVAFFIGFALALV----VVALSGTILL--WLYGSF------WTTFF 311
+ +FK ++ LV IG++L V + L G LL WL F W+ F
Sbjct: 2337 ISLFKLVVELV--------IGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARF 2388
Query: 312 VIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGW 346
+F+ + FT R + +T MY I+C +V +
Sbjct: 2389 FVFVANMLPAFTLLRFYIVVTAMYKIFCLCRHVMY 2423
>sp|P0C6Y0|R1AB_CVMJH Replicase polyprotein 1ab OS=Murine coronavirus (strain JHM) GN=rep
PE=1 SV=1
Length = 7180
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 264 VGMFKFLMVLVVAA---LVAFFIGFALALVVVALSGTILLWLYGSF-WTTFFVIFLGGLA 319
+ +FK ++ LV+ V F+ F L + + + ++ G+ W+ +F+ +
Sbjct: 2394 ISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANML 2453
Query: 320 FKFTHERLALFITTMYSIYCAWTYVGW 346
FT R + +T MY +YC +V +
Sbjct: 2454 PAFTLLRFYIVVTAMYKVYCLCRHVMY 2480
>sp|Q9C0Y5|PDR1_SCHPO ATP-binding cassette transporter pdr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pdr1 PE=3 SV=1
Length = 1396
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 242 MRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301
++ SFF +I+ M +F+F+ +L A +A IG ALV++ G ++
Sbjct: 535 LKRNARSFFIFYLFTIVITFCMSAVFRFIALLSTTAEIAALIGGIGALVLIIFCGAVMPV 594
Query: 302 LYGSFW 307
Y +W
Sbjct: 595 QYIGWW 600
>sp|Q9NXW2|DJB12_HUMAN DnaJ homolog subfamily B member 12 OS=Homo sapiens GN=DNAJB12 PE=1
SV=4
Length = 375
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 382 QTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMTSEDEVVRLLNCTD 441
QT+G Q P+ + A + P SA+ G ST G +E + V R+ C D
Sbjct: 55 QTAGDQPPPTDTTHATHRKAGGTDAP--SANGEAGGESTKGYTAEQVAA--VKRVKQCKD 110
Query: 442 HYSALGLSRFENVDVSILKREYRK 465
+Y LG+SR LK+ YR+
Sbjct: 111 YYEILGVSR--GASDEDLKKAYRR 132
>sp|P0C6U9|R1A_CVM2 Replicase polyprotein 1a OS=Murine coronavirus (strain 2) GN=1a PE=3
SV=1
Length = 4416
Score = 32.3 bits (72), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 20/88 (22%)
Query: 264 VGMFKFLMVLVVAALVAFFIGFALALV----VVALSGTILL--WLYGSF------WTTFF 311
+ +FK ++ LV IG++L V + L G LL WL F W+ F
Sbjct: 2337 ISLFKLVVELV--------IGYSLYTVCFYPLFGLIGMQLLTTWLPEFFMLETMHWSARF 2388
Query: 312 VIFLGGLAFKFTHERLALFITTMYSIYC 339
+F+ + FT R + +T MY I+C
Sbjct: 2389 FVFVANMLPAFTLLRFYIVVTAMYKIFC 2416
>sp|P0C6V1|R1A_CVMJH Replicase polyprotein 1a OS=Murine coronavirus (strain JHM) GN=1a
PE=1 SV=1
Length = 4474
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 264 VGMFKFLMVLVVAA---LVAFFIGFALALVVVALSGTILLWLYGSF-WTTFFVIFLGGLA 319
+ +FK ++ LV+ V F+ F L + + + ++ G+ W+ +F+ +
Sbjct: 2394 ISLFKLVVELVIGYSLYTVCFYPLFVLVGMQLLTTWLPEFFMLGTMHWSARLFVFVANML 2453
Query: 320 FKFTHERLALFITTMYSIYC 339
FT R + +T MY +YC
Sbjct: 2454 PAFTLLRFYIVVTAMYKVYC 2473
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,131,224
Number of Sequences: 539616
Number of extensions: 7186987
Number of successful extensions: 23843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 23639
Number of HSP's gapped (non-prelim): 275
length of query: 484
length of database: 191,569,459
effective HSP length: 121
effective length of query: 363
effective length of database: 126,275,923
effective search space: 45838160049
effective search space used: 45838160049
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)