Query 011502
Match_columns 484
No_of_seqs 57 out of 59
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 02:04:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0720 Molecular chaperone (D 100.0 4.5E-46 9.8E-51 380.7 -3.6 257 190-476 11-269 (490)
2 cd06257 DnaJ DnaJ domain or J- 98.7 8.7E-09 1.9E-13 75.2 3.2 34 441-476 1-34 (55)
3 smart00271 DnaJ DnaJ molecular 98.7 1.5E-08 3.2E-13 75.4 3.3 35 440-476 1-35 (60)
4 KOG1150 Predicted molecular ch 98.6 2.4E-08 5.3E-13 96.6 4.1 51 424-476 31-87 (250)
5 PTZ00037 DnaJ_C chaperone prot 98.6 1.8E-08 3.9E-13 103.7 3.2 34 440-475 28-61 (421)
6 PF00226 DnaJ: DnaJ domain; I 98.6 4.1E-08 8.8E-13 74.5 3.0 34 441-476 1-34 (64)
7 KOG0721 Molecular chaperone (D 98.2 1.1E-06 2.3E-11 85.5 3.9 42 432-475 91-132 (230)
8 KOG0716 Molecular chaperone (D 98.2 1.1E-06 2.3E-11 87.6 2.8 36 439-476 30-65 (279)
9 PTZ00341 Ring-infected erythro 98.2 9.5E-07 2.1E-11 99.6 2.8 36 439-476 572-607 (1136)
10 PRK09430 djlA Dna-J like membr 97.9 5.1E-06 1.1E-10 81.1 3.0 35 440-476 200-234 (267)
11 KOG0715 Molecular chaperone (D 97.9 5.6E-06 1.2E-10 81.9 3.0 35 440-476 43-77 (288)
12 PTZ00100 DnaJ chaperone protei 97.9 9.5E-06 2.1E-10 72.0 2.9 34 440-475 65-98 (116)
13 KOG0624 dsRNA-activated protei 97.6 3.3E-05 7.2E-10 80.5 3.5 42 431-474 382-426 (504)
14 KOG0550 Molecular chaperone (D 97.4 6.5E-05 1.4E-09 79.2 1.5 35 440-476 373-407 (486)
15 KOG0722 Molecular chaperone (D 97.3 0.00011 2.3E-09 74.0 2.3 35 440-476 33-67 (329)
16 COG5407 SEC63 Preprotein trans 97.3 0.00012 2.6E-09 78.0 2.4 37 438-476 96-132 (610)
17 KOG1789 Endocytosis protein RM 95.0 0.016 3.4E-07 67.5 2.9 37 440-476 1281-1319(2235)
18 KOG0431 Auxilin-like protein a 94.0 0.028 6.1E-07 59.5 1.9 22 454-475 400-421 (453)
19 PF05297 Herpes_LMP1: Herpesvi 93.0 0.027 5.9E-07 57.9 0.0 49 298-353 127-179 (381)
20 COG5269 ZUO1 Ribosome-associat 91.4 0.11 2.4E-06 53.5 2.0 36 440-475 43-79 (379)
21 PF09605 Trep_Strep: Hypotheti 89.0 11 0.00025 35.4 13.0 59 288-346 60-122 (186)
22 PRK11598 putative metal depend 87.1 4.2 9.2E-05 44.3 10.1 39 247-285 51-93 (545)
23 TIGR02185 Trep_Strep conserved 87.1 14 0.0003 35.0 12.3 94 246-339 8-117 (189)
24 PRK10263 DNA translocase FtsK; 86.8 4.3 9.4E-05 48.8 10.7 11 306-316 170-180 (1355)
25 PF11808 DUF3329: Domain of un 86.4 2.2 4.7E-05 36.0 6.0 36 268-303 11-46 (90)
26 PF04156 IncA: IncA protein; 86.2 2.6 5.6E-05 38.5 6.9 47 270-325 18-64 (191)
27 KOG0723 Molecular chaperone (D 82.3 1.2 2.5E-05 40.4 2.8 30 444-475 60-89 (112)
28 PF03208 PRA1: PRA1 family pro 82.1 8.7 0.00019 34.1 8.2 72 266-341 42-114 (153)
29 KOG0568 Molecular chaperone (D 80.2 1.3 2.8E-05 45.1 2.6 33 441-475 48-80 (342)
30 KOG4800 Neuronal membrane glyc 77.9 22 0.00048 36.0 10.2 95 249-376 58-161 (248)
31 TIGR00947 2A73 probable bicarb 77.5 70 0.0015 33.5 14.2 24 330-353 205-228 (425)
32 COG1076 DjlA DnaJ-domain-conta 77.1 1.7 3.7E-05 40.2 2.2 46 430-477 100-148 (174)
33 PF12805 FUSC-like: FUSC-like 75.8 8 0.00017 37.8 6.6 17 430-446 182-198 (284)
34 PRK13706 conjugal transfer pil 75.7 86 0.0019 31.9 13.7 99 214-320 58-170 (248)
35 cd06181 BI-1-like BAX inhibito 74.0 77 0.0017 29.6 14.6 38 226-263 52-90 (212)
36 PF03208 PRA1: PRA1 family pro 73.9 16 0.00035 32.4 7.4 36 289-325 99-134 (153)
37 PRK09598 lipid A phosphoethano 72.7 32 0.00069 37.5 10.7 24 320-343 176-199 (522)
38 COG1480 Predicted membrane-ass 71.3 73 0.0016 36.6 13.2 79 281-359 349-442 (700)
39 PRK11560 phosphoethanolamine t 68.5 54 0.0012 36.2 11.4 43 247-289 49-97 (558)
40 PF13994 PgaD: PgaD-like prote 68.2 23 0.00049 31.9 7.1 22 243-264 14-35 (138)
41 PF12036 DUF3522: Protein of u 67.0 22 0.00047 33.7 7.1 23 282-304 115-137 (186)
42 PRK12585 putative monovalent c 66.5 26 0.00057 34.6 7.7 18 252-269 13-30 (197)
43 PLN02922 prenyltransferase 65.9 17 0.00038 36.9 6.6 12 234-245 76-87 (315)
44 TIGR02755 TraX_Ftype type-F co 64.3 1.3E+02 0.0029 30.1 12.1 47 303-362 129-176 (224)
45 PRK02983 lysS lysyl-tRNA synth 62.4 1.2E+02 0.0027 36.2 13.3 99 210-309 11-137 (1094)
46 PF10947 DUF2628: Protein of u 61.5 73 0.0016 27.0 8.6 60 246-307 41-101 (108)
47 PLN00012 chlorophyll synthetas 61.4 58 0.0013 34.2 9.6 19 286-304 196-214 (375)
48 PF01098 FTSW_RODA_SPOVE: Cell 60.8 93 0.002 31.5 10.7 33 216-248 68-101 (358)
49 TIGR00870 trp transient-recept 60.0 2.8E+02 0.006 30.7 17.9 32 322-353 579-610 (743)
50 PRK10490 sensor protein KdpD; 57.2 28 0.00061 39.8 7.0 52 264-320 428-491 (895)
51 PF07857 DUF1632: CEO family ( 56.9 53 0.0012 33.1 8.1 73 286-366 35-120 (254)
52 PRK13387 1,4-dihydroxy-2-napht 56.8 88 0.0019 31.8 9.7 31 287-317 114-159 (317)
53 TIGR02872 spore_ytvI sporulati 56.6 85 0.0018 30.4 9.2 25 330-354 303-327 (341)
54 TIGR00751 menA 1,4-dihydroxy-2 56.1 85 0.0018 31.5 9.4 17 288-304 110-126 (284)
55 PRK07419 1,4-dihydroxy-2-napht 55.6 37 0.00079 34.6 6.8 17 287-303 119-135 (304)
56 PF13903 Claudin_2: PMP-22/EMP 55.0 1E+02 0.0022 26.5 8.6 16 338-353 149-164 (172)
57 TIGR02235 menA_cyano-plnt 1,4- 54.5 68 0.0015 32.2 8.4 18 287-304 106-123 (285)
58 PRK12887 ubiA tocopherol phyty 54.4 75 0.0016 32.2 8.8 18 287-304 120-137 (308)
59 PRK10983 putative inner membra 53.7 2.7E+02 0.0059 28.9 12.8 27 330-356 308-334 (368)
60 PRK10245 adrA diguanylate cycl 52.8 99 0.0022 31.5 9.4 20 285-304 138-157 (366)
61 PF13398 Peptidase_M50B: Pepti 52.3 2.1E+02 0.0047 27.1 13.0 22 291-312 121-142 (200)
62 PF14800 DUF4481: Domain of un 52.0 25 0.00054 36.7 5.0 17 248-264 72-88 (308)
63 PRK01766 multidrug efflux prot 51.9 2.7E+02 0.0059 28.2 19.7 56 291-347 353-408 (456)
64 PF08019 DUF1705: Domain of un 51.8 1.5E+02 0.0033 26.9 9.5 23 320-342 125-147 (156)
65 PF11239 DUF3040: Protein of u 51.7 36 0.00078 28.2 5.1 28 276-303 51-78 (82)
66 PRK12882 ubiA prenyltransferas 51.3 1.8E+02 0.0038 28.5 10.5 18 287-304 105-122 (276)
67 PRK09776 putative diguanylate 50.6 1.6E+02 0.0035 33.0 11.3 12 441-452 438-449 (1092)
68 PF07332 DUF1469: Protein of u 50.3 1.2E+02 0.0027 25.8 8.3 6 288-293 74-79 (121)
69 TIGR00540 hemY_coli hemY prote 50.0 32 0.0007 35.0 5.5 25 263-287 1-25 (409)
70 PF09531 Ndc1_Nup: Nucleoporin 49.5 1E+02 0.0023 33.4 9.4 70 235-304 37-113 (602)
71 TIGR00383 corA magnesium Mg(2+ 49.3 12 0.00027 36.5 2.3 32 286-317 269-306 (318)
72 PRK06080 1,4-dihydroxy-2-napht 49.1 1.5E+02 0.0031 29.2 9.6 18 287-304 113-130 (293)
73 KOG0720 Molecular chaperone (D 48.5 8.5 0.00018 42.1 1.2 102 314-423 99-206 (490)
74 PF01184 Grp1_Fun34_YaaH: GPR1 48.4 2.6E+02 0.0057 27.0 11.2 69 296-365 78-161 (211)
75 PF12351 Fig1: Ca2+ regulator 48.1 1.7E+02 0.0038 27.7 9.6 55 247-301 109-163 (182)
76 MTH00217 ND4 NADH dehydrogenas 47.9 1.3E+02 0.0028 32.3 9.8 20 349-368 118-137 (482)
77 PRK10726 hypothetical protein; 47.2 98 0.0021 28.2 7.3 63 241-304 40-104 (105)
78 COG0651 HyfB Formate hydrogenl 46.7 3.9E+02 0.0084 29.1 13.1 21 347-367 113-133 (504)
79 PRK12287 tqsA pheromone autoin 46.5 3.3E+02 0.0072 27.6 13.5 26 331-356 293-318 (344)
80 PLN02878 homogentisate phytylt 46.1 1.4E+02 0.003 30.9 9.1 24 280-304 85-108 (280)
81 PF07264 EI24: Etoposide-induc 45.5 1.4E+02 0.0031 27.3 8.5 25 246-270 15-40 (219)
82 COG4709 Predicted membrane pro 45.2 3.3E+02 0.0071 27.2 11.5 24 238-261 82-105 (195)
83 PRK05771 V-type ATP synthase s 44.9 4.7E+02 0.01 29.0 15.1 47 319-368 561-607 (646)
84 PRK00293 dipZ thiol:disulfide 44.8 2.1E+02 0.0045 31.5 10.9 50 273-322 326-380 (571)
85 PF06738 DUF1212: Protein of u 44.4 2.2E+02 0.0048 26.0 9.5 18 283-300 154-171 (193)
86 KOG3103 Rab GTPase interacting 44.2 69 0.0015 32.8 6.6 64 268-338 178-243 (249)
87 TIGR01666 YCCS hypothetical me 44.1 58 0.0013 37.0 6.8 37 285-321 108-144 (704)
88 PRK10189 MATE family multidrug 44.1 4.1E+02 0.0089 28.0 14.9 26 307-332 389-414 (478)
89 PF07857 DUF1632: CEO family ( 44.1 52 0.0011 33.1 5.8 78 207-306 24-102 (254)
90 PF04515 Choline_transpo: Plas 43.9 3.3E+02 0.0071 26.8 11.8 41 274-314 29-69 (334)
91 PRK12873 ubiA prenyltransferas 43.9 3.8E+02 0.0082 27.5 13.9 43 270-312 144-193 (294)
92 PF09972 DUF2207: Predicted me 43.6 1.5E+02 0.0033 30.0 9.0 17 335-351 455-471 (511)
93 PF13446 RPT: A repeated domai 42.1 22 0.00047 27.6 2.3 27 440-468 5-31 (62)
94 PRK07566 bacteriochlorophyll/c 41.7 1.6E+02 0.0035 29.7 8.8 18 287-304 132-149 (314)
95 KOG0828 Predicted E3 ubiquitin 41.6 5.9E+02 0.013 29.1 14.8 94 138-231 267-386 (636)
96 KOG1287 Amino acid transporter 41.5 4.2E+02 0.0092 29.4 12.5 122 222-346 45-220 (479)
97 PF11992 DUF3488: Domain of un 41.5 2.7E+02 0.0058 28.3 10.4 15 344-358 126-140 (325)
98 PF13886 DUF4203: Domain of un 41.1 3.1E+02 0.0068 25.8 10.4 28 306-333 114-141 (210)
99 PRK00247 putative inner membra 40.9 1.4E+02 0.003 32.5 8.6 22 295-316 249-270 (429)
100 KOG2946 Uncharacterized conser 40.9 25 0.00054 35.5 3.0 37 282-321 159-195 (234)
101 PRK10747 putative protoheme IX 40.6 52 0.0011 33.5 5.3 21 263-283 1-21 (398)
102 PRK06458 hydrogenase 4 subunit 40.4 2E+02 0.0042 30.7 9.6 21 347-367 115-135 (490)
103 KOG4740 Uncharacterized conser 40.1 54 0.0012 36.8 5.6 53 246-299 344-397 (564)
104 PRK08601 NADH dehydrogenase su 39.8 3.8E+02 0.0081 29.7 11.8 22 247-268 7-28 (509)
105 PRK12884 ubiA prenyltransferas 39.6 3.3E+02 0.0072 26.4 10.4 18 287-304 104-121 (279)
106 PF00822 PMP22_Claudin: PMP-22 39.5 14 0.0003 32.3 0.9 16 338-353 145-160 (166)
107 PRK02935 hypothetical protein; 38.9 86 0.0019 28.7 5.8 43 269-312 15-64 (110)
108 PRK12287 tqsA pheromone autoin 38.9 2.4E+02 0.0051 28.6 9.6 44 309-352 295-339 (344)
109 PF13260 DUF4051: Protein of u 38.9 18 0.00039 29.2 1.3 21 304-324 4-24 (54)
110 KOG3618 Adenylyl cyclase [Gene 38.8 5.7E+02 0.012 31.0 13.3 131 205-356 70-201 (1318)
111 PRK10160 taurine transporter s 38.6 4E+02 0.0086 26.3 11.6 8 204-211 13-20 (275)
112 TIGR00844 c_cpa1 na(+)/h(+) an 38.2 4.8E+02 0.011 30.8 12.8 16 344-359 325-340 (810)
113 TIGR00844 c_cpa1 na(+)/h(+) an 38.1 2.8E+02 0.0061 32.6 11.0 9 341-349 361-369 (810)
114 PF10011 DUF2254: Predicted me 37.6 4.9E+02 0.011 27.1 18.5 146 216-368 11-168 (371)
115 PF10710 DUF2512: Protein of u 37.5 94 0.002 28.7 5.9 27 283-309 56-82 (136)
116 KOG4453 Predicted ER membrane 37.4 3.4E+02 0.0073 28.2 10.2 118 155-303 62-212 (269)
117 COG4452 CreD Inner membrane pr 37.1 70 0.0015 34.9 5.7 71 282-352 348-434 (443)
118 COG0600 TauC ABC-type nitrate/ 36.3 4.6E+02 0.01 26.4 12.7 88 215-302 12-121 (258)
119 PF11026 DUF2721: Protein of u 36.3 1.4E+02 0.0031 26.7 6.8 16 252-267 62-77 (130)
120 PF02673 BacA: Bacitracin resi 36.1 2.2E+02 0.0047 28.7 8.6 45 330-374 195-243 (259)
121 PF12805 FUSC-like: FUSC-like 35.9 2.5E+02 0.0054 27.6 9.0 30 250-279 29-58 (284)
122 TIGR00934 2a38euk potassium up 34.8 1.2E+02 0.0026 35.5 7.5 13 308-320 527-539 (800)
123 PF11286 DUF3087: Protein of u 34.7 72 0.0016 30.8 4.9 14 283-296 29-42 (165)
124 TIGR01271 CFTR_protein cystic 34.6 8.4E+02 0.018 30.2 14.6 25 324-348 200-224 (1490)
125 COG4062 MtrB Tetrahydromethano 34.6 39 0.00084 30.7 2.9 20 280-299 79-98 (108)
126 TIGR01473 cyoE_ctaB protoheme 34.5 1.3E+02 0.0028 29.5 6.8 23 220-242 44-66 (280)
127 PLN00136 silicon transporter; 34.5 2.1E+02 0.0046 30.9 8.8 78 287-368 301-396 (482)
128 PF07787 DUF1625: Protein of u 34.3 1.3E+02 0.0028 29.3 6.7 17 209-225 178-194 (248)
129 PF09605 Trep_Strep: Hypotheti 34.1 1.1E+02 0.0024 28.9 6.0 28 332-359 65-92 (186)
130 TIGR02210 rodA_shape rod shape 34.1 5.4E+02 0.012 26.5 11.8 29 220-248 66-94 (352)
131 TIGR01695 mviN integral membra 33.6 5.2E+02 0.011 26.2 11.9 64 306-369 357-427 (502)
132 COG1863 MnhE Multisubunit Na+/ 33.3 2E+02 0.0043 27.3 7.5 40 269-308 5-46 (158)
133 PRK10794 cell wall shape-deter 33.2 5.9E+02 0.013 26.6 12.0 30 219-248 80-109 (370)
134 KOG0255 Synaptic vesicle trans 33.1 1.9E+02 0.0041 29.7 8.0 77 262-340 172-248 (521)
135 PRK12392 bacteriochlorophyll c 33.1 86 0.0019 32.3 5.5 17 288-304 155-171 (331)
136 PF03839 Sec62: Translocation 33.0 1.4E+02 0.003 29.8 6.7 34 271-308 142-179 (224)
137 PRK09546 zntB zinc transporter 32.7 30 0.00066 34.4 2.2 28 287-314 276-309 (324)
138 PRK13595 ubiA prenyltransferas 32.3 3.6E+02 0.0078 27.9 9.7 19 286-304 117-135 (292)
139 TIGR03717 R_switched_YjbE inte 32.3 4.5E+02 0.0097 25.0 10.4 60 305-370 95-154 (176)
140 PF10112 Halogen_Hydrol: 5-bro 32.2 1.3E+02 0.0028 28.2 6.1 23 279-301 23-45 (199)
141 COG4758 Predicted membrane pro 32.1 1.7E+02 0.0037 29.8 7.2 40 305-351 28-67 (235)
142 PRK12768 CysZ-like protein; Re 31.6 5.4E+02 0.012 25.8 11.0 29 239-267 7-35 (240)
143 PF07907 YibE_F: YibE/F-like p 31.3 5.5E+02 0.012 25.7 10.5 81 224-304 9-102 (244)
144 PRK11715 inner membrane protei 31.2 2.2E+02 0.0047 31.0 8.3 26 281-306 353-378 (436)
145 PF07290 DUF1449: Protein of u 31.1 1.9E+02 0.004 28.4 7.1 28 237-265 53-80 (202)
146 PF06570 DUF1129: Protein of u 31.0 4.7E+02 0.01 24.8 9.8 11 179-189 35-45 (206)
147 PF14362 DUF4407: Domain of un 30.8 3.3E+02 0.0071 27.0 8.9 22 209-230 8-29 (301)
148 PF04341 DUF485: Protein of un 30.8 1.2E+02 0.0027 25.6 5.2 21 283-304 54-74 (91)
149 COG0628 yhhT Predicted permeas 30.6 5.8E+02 0.012 25.7 11.0 39 330-368 304-342 (355)
150 PRK12665 putative monovalent c 30.5 89 0.0019 33.7 5.3 25 343-367 114-138 (521)
151 PF03176 MMPL: MMPL family; I 30.4 1.7E+02 0.0037 28.7 6.8 8 361-368 296-303 (333)
152 PRK13362 protoheme IX farnesyl 30.3 5.9E+02 0.013 26.0 10.8 42 271-312 147-193 (306)
153 COG0575 CdsA CDP-diglyceride s 30.0 5.5E+02 0.012 25.4 14.1 33 343-376 130-162 (265)
154 PRK05771 V-type ATP synthase s 29.9 5.5E+02 0.012 28.4 11.3 73 235-308 326-415 (646)
155 PF03878 YIF1: YIF1; InterPro 29.7 4.1E+02 0.0088 26.8 9.3 65 233-299 102-172 (240)
156 TIGR01476 chlor_syn_BchG bacte 29.5 4.5E+02 0.0099 25.8 9.6 16 290-305 109-124 (283)
157 PRK11281 hypothetical protein; 29.3 8.4E+02 0.018 29.8 13.2 25 288-312 690-714 (1113)
158 PF02366 PMT: Dolichyl-phospha 29.0 2.2E+02 0.0047 26.8 7.1 16 287-302 184-199 (245)
159 PLN02380 1-acyl-sn-glycerol-3- 29.0 1.6E+02 0.0035 31.1 6.8 49 249-304 307-355 (376)
160 PRK06758 hypothetical protein; 28.7 70 0.0015 29.2 3.6 19 355-374 102-120 (128)
161 PRK12883 ubiA prenyltransferas 28.6 5.4E+02 0.012 25.2 9.9 18 287-304 104-121 (277)
162 COG0474 MgtA Cation transport 28.6 5.5E+02 0.012 30.1 11.4 68 235-306 809-877 (917)
163 PF07856 Orai-1: Mediator of C 28.4 1.5E+02 0.0033 28.4 6.0 51 254-308 110-165 (175)
164 COG1289 Predicted membrane pro 28.3 2.4E+02 0.0052 31.3 8.2 56 286-341 407-467 (674)
165 COG1289 Predicted membrane pro 28.2 1.2E+02 0.0027 33.5 6.0 34 271-308 67-100 (674)
166 PRK10714 undecaprenyl phosphat 28.0 3.2E+02 0.0069 27.5 8.4 23 269-291 230-252 (325)
167 PRK12870 ubiA 4-hydroxybenzoat 27.9 3.7E+02 0.0081 26.9 8.8 18 287-304 115-132 (290)
168 PF12084 DUF3561: Protein of u 27.8 1.2E+02 0.0026 27.7 4.8 58 241-304 43-107 (107)
169 COG1807 ArnT 4-amino-4-deoxy-L 27.8 7.6E+02 0.016 26.2 14.6 10 344-353 206-215 (535)
170 PF11808 DUF3329: Domain of un 27.5 2.1E+02 0.0045 24.2 6.0 18 291-308 14-31 (90)
171 PF01544 CorA: CorA-like Mg2+ 27.5 17 0.00037 34.0 -0.5 32 286-317 245-284 (292)
172 PRK09573 (S)-2,3-di-O-geranylg 27.5 1.7E+02 0.0036 28.7 6.2 14 291-304 108-121 (279)
173 COG4317 Uncharacterized protei 27.5 94 0.002 27.6 4.0 49 269-321 4-59 (93)
174 PF06157 DUF973: Protein of un 27.3 6.4E+02 0.014 26.0 10.5 31 234-264 66-102 (285)
175 PRK12871 ubiA prenyltransferas 27.1 4.1E+02 0.0088 27.0 9.0 15 289-303 125-139 (297)
176 PF07281 INSIG: Insulin-induce 26.9 3E+02 0.0066 26.8 7.7 87 205-302 40-147 (193)
177 PLN00012 chlorophyll synthetas 26.8 7.8E+02 0.017 26.1 14.1 14 288-301 227-240 (375)
178 TIGR01666 YCCS hypothetical me 26.8 2.6E+02 0.0056 32.0 8.3 32 428-459 591-626 (704)
179 COG1295 Rbn Ribonuclease BN fa 26.8 6.7E+02 0.015 25.3 13.0 37 279-319 240-280 (303)
180 PF14257 DUF4349: Domain of un 26.4 85 0.0018 30.4 4.0 25 275-299 233-257 (262)
181 PF06930 DUF1282: Protein of u 26.3 5E+02 0.011 23.7 11.9 24 327-355 127-150 (170)
182 PF10129 OpgC_C: OpgC protein; 26.3 3.2E+02 0.007 28.5 8.3 67 229-308 288-354 (358)
183 PF01040 UbiA: UbiA prenyltran 26.1 5.2E+02 0.011 23.8 9.1 18 287-304 92-109 (257)
184 TIGR00776 RhaT RhaT L-rhamnose 25.8 6.5E+02 0.014 24.8 12.4 16 328-343 157-172 (290)
185 PRK10929 putative mechanosensi 25.8 1.3E+03 0.028 28.3 16.3 135 175-319 426-584 (1109)
186 TIGR00879 SP MFS transporter, 25.8 5.9E+02 0.013 24.3 9.9 13 304-316 450-462 (481)
187 COG0815 Lnt Apolipoprotein N-a 25.7 4E+02 0.0087 29.4 9.2 18 291-308 70-87 (518)
188 PRK01265 heat shock protein Ht 25.7 2.9E+02 0.0063 28.8 7.8 6 432-437 289-294 (324)
189 PRK13105 ubiA prenyltransferas 25.6 6.9E+02 0.015 25.4 10.3 19 287-305 105-123 (282)
190 TIGR02854 spore_II_GA sigma-E 25.5 3.5E+02 0.0075 27.4 8.1 19 341-359 122-140 (288)
191 TIGR01667 YCCS_YHJK integral m 25.3 4.6E+02 0.0099 30.0 9.8 35 429-464 595-633 (701)
192 PF12955 DUF3844: Domain of un 25.1 84 0.0018 28.2 3.4 28 247-274 66-93 (103)
193 PF03653 UPF0093: Uncharacteri 25.1 2.1E+02 0.0047 26.1 6.1 20 285-304 59-78 (147)
194 COG0577 SalY ABC-type antimicr 25.1 5.5E+02 0.012 24.0 8.8 19 215-233 300-318 (419)
195 PRK10649 hypothetical protein; 25.0 6.6E+02 0.014 27.9 10.8 119 223-343 49-202 (577)
196 PRK06926 flagellar motor prote 25.0 62 0.0014 32.8 2.9 17 304-320 33-50 (271)
197 PF13787 HXXEE: Protein of unk 24.9 4.1E+02 0.0089 22.5 7.4 18 280-297 92-109 (116)
198 KOG2927 Membrane component of 24.7 1.4E+02 0.0029 32.3 5.3 28 282-309 228-259 (372)
199 PF09991 DUF2232: Predicted me 24.5 5.7E+02 0.012 24.2 9.0 21 265-285 36-56 (290)
200 PF01027 Bax1-I: Inhibitor of 24.5 5.4E+02 0.012 23.4 12.2 15 290-304 127-141 (205)
201 KOG3114 Uncharacterized conser 24.5 37 0.0008 35.2 1.2 14 302-315 115-128 (290)
202 COG3307 RfaL Lipid A core - O- 24.4 7.4E+02 0.016 25.0 14.1 29 234-262 66-94 (424)
203 COG1955 FlaJ Archaeal flagella 24.3 8.5E+02 0.018 27.6 11.3 45 191-235 128-172 (527)
204 PF11712 Vma12: Endoplasmic re 24.2 2.9E+02 0.0063 24.9 6.7 45 263-307 79-135 (142)
205 TIGR00918 2A060602 The Eukaryo 24.1 2.2E+02 0.0047 34.6 7.4 30 282-311 994-1023(1145)
206 PRK11909 cobalt transport prot 24.1 4E+02 0.0086 26.4 8.1 12 244-256 45-56 (230)
207 TIGR00765 yihY_not_rbn YihY fa 24.1 3.5E+02 0.0077 26.2 7.7 20 297-320 234-253 (259)
208 PF10337 DUF2422: Protein of u 24.0 8.7E+02 0.019 25.7 15.8 40 190-229 16-55 (459)
209 PF05440 MtrB: Tetrahydrometha 23.9 61 0.0013 28.9 2.3 20 280-299 78-97 (97)
210 PF07543 PGA2: Protein traffic 23.9 25 0.00054 32.6 -0.1 17 307-324 17-33 (140)
211 PRK10907 intramembrane serine 23.7 5.3E+02 0.011 26.3 9.0 46 206-253 133-178 (276)
212 PF09726 Macoilin: Transmembra 23.6 1.1E+03 0.025 27.1 12.5 108 222-343 29-140 (697)
213 PRK11006 phoR phosphate regulo 23.5 1.9E+02 0.0041 29.1 5.9 20 284-303 29-48 (430)
214 PF04117 Mpv17_PMP22: Mpv17 / 23.5 3.4E+02 0.0074 21.3 6.2 58 198-262 9-66 (68)
215 PF02460 Patched: Patched fami 23.4 1.1E+02 0.0025 34.2 4.8 28 276-303 668-695 (798)
216 TIGR00917 2A060601 Niemann-Pic 23.4 1.6E+02 0.0034 35.6 6.1 26 280-305 1076-1101(1204)
217 PRK14416 membrane protein; Pro 23.3 4E+02 0.0086 26.4 7.8 25 346-370 159-187 (200)
218 PHA03239 envelope glycoprotein 23.3 5.3E+02 0.012 28.4 9.5 56 246-301 254-309 (429)
219 PRK04897 heat shock protein Ht 23.3 2.1E+02 0.0045 28.9 6.1 13 292-304 49-61 (298)
220 PRK09577 multidrug efflux prot 23.3 2.5E+02 0.0054 33.0 7.6 50 245-294 346-396 (1032)
221 COG0382 UbiA 4-hydroxybenzoate 23.2 5.1E+02 0.011 25.6 8.7 14 290-303 119-132 (289)
222 PF05857 TraX: TraX protein; 23.1 6.4E+02 0.014 23.8 10.1 58 266-323 85-147 (219)
223 PRK13021 secF preprotein trans 23.0 4.1E+02 0.0089 27.3 8.2 21 206-226 114-134 (297)
224 PF07172 GRP: Glycine rich pro 22.9 1E+02 0.0023 26.8 3.5 21 346-367 8-28 (95)
225 PRK12878 ubiA 4-hydroxybenzoat 22.6 7.1E+02 0.015 25.4 9.8 17 293-309 196-212 (314)
226 PRK05951 ubiA prenyltransferas 22.4 8E+02 0.017 24.6 10.8 18 287-304 116-133 (296)
227 TIGR00766 ribonuclease, putati 22.3 3.8E+02 0.0083 25.9 7.5 22 292-317 233-254 (263)
228 PF06550 DUF1119: Protein of u 22.2 7E+02 0.015 26.2 9.7 73 219-297 45-148 (283)
229 TIGR00820 zip ZIP zinc/iron tr 22.1 7.6E+02 0.016 25.4 9.9 27 242-268 222-248 (324)
230 PF00892 EamA: EamA-like trans 22.1 4E+02 0.0087 21.1 7.8 74 241-318 45-121 (126)
231 PRK04214 rbn ribonuclease BN/u 22.1 9.3E+02 0.02 25.3 13.3 19 339-357 253-271 (412)
232 PF13571 DUF4133: Domain of un 22.0 1.7E+02 0.0037 26.2 4.6 39 279-317 15-54 (96)
233 PRK14397 membrane protein; Pro 22.0 8.2E+02 0.018 24.6 12.1 14 274-287 105-118 (222)
234 PF14752 RBP_receptor: Retinol 21.9 1.2E+03 0.027 26.6 12.6 71 296-368 418-510 (617)
235 COG1585 Membrane protein impli 21.9 4.8E+02 0.01 24.1 7.7 7 287-293 32-38 (140)
236 PF06341 DUF1056: Protein of u 21.7 3.3E+02 0.0071 22.9 5.9 47 249-302 6-52 (63)
237 PRK15033 tricarballylate utili 21.6 4.1E+02 0.0089 28.8 8.2 18 248-265 237-254 (389)
238 PLN02715 lipid phosphate phosp 21.6 3.3E+02 0.0072 28.6 7.3 29 342-374 121-149 (327)
239 PRK15385 magnesium transport p 21.5 8.4E+02 0.018 24.6 11.7 59 305-366 61-126 (225)
240 PF07260 ANKH: Progressive ank 21.5 1E+03 0.023 25.6 11.7 40 308-349 169-210 (345)
241 MTH00124 ND4 NADH dehydrogenas 21.5 6.9E+02 0.015 26.6 9.8 18 349-366 102-119 (457)
242 PRK03427 cell division protein 21.5 73 0.0016 33.7 2.6 30 452-481 209-238 (333)
243 KOG2292 Oligosaccharyltransfer 21.4 2.9E+02 0.0064 31.8 7.2 98 261-358 132-260 (751)
244 TIGR01197 nramp NRAMP (natural 21.4 6.1E+02 0.013 26.9 9.3 29 324-352 138-170 (390)
245 PF04632 FUSC: Fusaric acid re 21.4 9.8E+02 0.021 25.8 10.9 83 279-363 390-489 (650)
246 TIGR01299 synapt_SV2 synaptic 21.2 1.3E+03 0.028 26.6 24.2 6 456-461 469-474 (742)
247 PF01810 LysE: LysE type trans 21.2 6.1E+02 0.013 22.8 12.0 100 204-304 50-152 (191)
248 KOG3609 Receptor-activated Ca2 21.2 6.1E+02 0.013 30.2 9.8 49 305-353 558-606 (822)
249 TIGR02056 ChlG chlorophyll syn 21.0 2.3E+02 0.0049 28.6 5.9 38 266-303 102-144 (306)
250 COG5265 ATM1 ABC-type transpor 21.0 3.6E+02 0.0079 30.2 7.7 83 219-311 22-104 (497)
251 PRK01637 hypothetical protein; 21.0 4.8E+02 0.01 25.9 8.0 11 341-351 248-258 (286)
252 PF08447 PAS_3: PAS fold; Int 20.9 21 0.00046 27.2 -1.0 29 440-474 6-35 (91)
253 PRK14585 pgaD putative PGA bio 20.9 3.2E+02 0.0069 26.0 6.3 9 250-258 22-30 (137)
254 PF01124 MAPEG: MAPEG family; 20.9 1.7E+02 0.0038 24.2 4.3 30 275-304 90-127 (129)
255 TIGR00775 NhaD Na+/H+ antiport 20.7 7.6E+02 0.017 26.2 9.9 26 342-367 97-123 (420)
256 PRK13362 protoheme IX farnesyl 20.4 4.9E+02 0.011 26.5 8.1 21 222-242 58-78 (306)
257 PF03739 YjgP_YjgQ: Predicted 20.3 2.6E+02 0.0056 27.4 6.0 49 252-301 305-353 (354)
258 PF04632 FUSC: Fusaric acid re 20.3 1.1E+03 0.024 25.4 14.8 52 203-260 330-381 (650)
259 PRK10435 cadB lysine/cadaverin 20.1 7.9E+02 0.017 25.3 9.7 17 267-283 351-367 (435)
260 PF11744 ALMT: Aluminium activ 20.1 9.4E+02 0.02 26.0 10.4 13 306-318 127-139 (406)
261 PF10032 Pho88: Phosphate tran 20.1 1.5E+02 0.0033 28.8 4.3 37 266-302 97-133 (192)
262 TIGR00914 2A0601 heavy metal e 20.0 2.7E+02 0.0058 32.7 6.9 66 234-299 876-946 (1051)
263 PF12576 DUF3754: Protein of u 20.0 5.1E+02 0.011 23.6 7.4 10 336-345 106-115 (141)
No 1
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-46 Score=380.75 Aligned_cols=257 Identities=36% Similarity=0.593 Sum_probs=230.5
Q ss_pred HHHHHhhhhhhHhhhhhhhhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011502 190 LMTNIYNAHDYVSRKVQQVYPVALNHL-GHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFK 268 (484)
Q Consensus 190 ~~t~~~~~rd~v~~~ver~wPiV~~~~-~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y 268 (484)
++.-.+++||. +.++||.|+..+ +++|++.|++ .+|+||++||||+++++|++++|+||||+++|.+||.|+.|
T Consensus 11 ~~~~~~k~~~~----~~~~~p~~~~~~~~~~g~~~l~~-k~~~~~~~r~~~~~~~~~~a~~~s~~~s~~~s~~s~~ql~~ 85 (490)
T KOG0720|consen 11 VKLRVYKGRDL----VLTKMPLVFSVVFMHNGSPILLL-KVWLDCAIRGFQSFIRMGTAPFFSIMWSTLVSANSMGQLTK 85 (490)
T ss_pred ecccccchhhh----hhhcCCcccchhhccccCchhHh-HhhccccccCCcchhccCCcchhheeeeeeeeccccccccc
Confidence 34455666664 567788877766 4678887777 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhHH
Q 011502 269 FLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLG 348 (484)
Q Consensus 269 ~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLG 348 (484)
+++.|+++..++.|+|.+++.+++++||+++||+| +||.+..+-+- .+|+++|+ +.+.|+.|.+-++.+|++
T Consensus 86 ~~~~~~a~~~~~~~~g~~~~~~~l~~~g~~~l~l~-~~w~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~s~kt~w~ 157 (490)
T KOG0720|consen 86 FILIMVATVSVALYIGRVVGSVTLALFGLLLLWLY-SFWGTVLFSFN--LAFLSKDE-----LITVYSVYSALSYKTWWG 157 (490)
T ss_pred cccchhhhhhhheeccccCcceeeccchHHHHHHH-HhhcchhhhHH--HHHhhhhh-----eeccccceeeeccchhhh
Confidence 99999999999999999999999999999999999 99999888777 89999999 889999999999999999
Q ss_pred HHHHHhhhhhhhHHHHHHhhhccccCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q 011502 349 LLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSGMQAGPSFSNGEPVHPAFSDNVPGLSADRSPGVPSTSGDDSEMT 428 (484)
Q Consensus 349 l~LslNLsFlSnDiL~~lLq~nv~~~~~~~~~Eq~~~~~~~~~~f~~e~~p~s~sE~~~~~~sd~~p~~~sTs~~~se~t 428 (484)
.++.+|+.+|.-|...++....+..+ . .+.-.+++..+..|++.+...++.+|..++.+.+++.+
T Consensus 158 ~~~k~l~~~i~l~f~~~f~~~~~~~~-~--------------~~r~l~~vk~~~~e~g~~tv~~~~~g~~~e~~va~n~t 222 (490)
T KOG0720|consen 158 LTLKLLRAVILLDFSIYFERNKIIQQ-T--------------ADRPLEPVKDSGAEEGDETVESRDYGCKKEIPVATNAT 222 (490)
T ss_pred hcchhhhhhhhhhcceeeeeehhhHH-H--------------HhhhcchhhhhccccCCCchhcCCcccccccccccchh
Confidence 99999999999999999988666655 2 11223456667778888889999999999999999999
Q ss_pred c-HHHHHHHhccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 429 S-EDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 429 s-~dEV~RIl~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+ +|++.|+++|+|||+||||+++ +|+++|||.|||||||||||||.
T Consensus 223 ~~adrl~re~~~~daYsvlGl~~d--~sd~~lKk~Yrk~A~LVhPDKn~ 269 (490)
T KOG0720|consen 223 SFADRLSRELNILDAYSALGLPSD--CSDADLKKNYRKKAMLVHPDKNM 269 (490)
T ss_pred hHHHhhhhhhcCCCchhhcCCCCC--CCHHHHHHHHHhhceEeCCCccC
Confidence 9 9999999999999999999985 99999999999999999999996
No 2
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=98.72 E-value=8.7e-09 Score=75.25 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=32.2
Q ss_pred cchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 441 DHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 441 D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
|||++||+++. ++.++||+.||+++++.|||++-
T Consensus 1 ~~y~vLgl~~~--~~~~~ik~~y~~l~~~~HPD~~~ 34 (55)
T cd06257 1 DYYDILGVPPD--ASDEEIKKAYRKLALKYHPDKNP 34 (55)
T ss_pred ChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 79999999984 99999999999999999999985
No 3
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=98.67 E-value=1.5e-08 Score=75.41 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=33.1
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++. ++.++||++||+++++.|||++.
T Consensus 1 ~~~y~vLgl~~~--~~~~~ik~ay~~l~~~~HPD~~~ 35 (60)
T smart00271 1 TDYYEILGVPRD--ASLDEIKKAYRKLALKYHPDKNP 35 (60)
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 489999999995 99999999999999999999986
No 4
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.4e-08 Score=96.59 Aligned_cols=51 Identities=25% Similarity=0.264 Sum_probs=47.4
Q ss_pred CCCCCcHHHHHHHhc-c-----ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 424 DSEMTSEDEVVRLLN-C-----TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 424 ~se~ts~dEV~RIl~-c-----~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
++-+|+..+|+||+. + ++-||||+|.|. ++.++|||-|||+++|||||||-
T Consensus 31 d~vLts~~qIeRllrpgstyfnLNpfeVLqIdpe--v~~edikkryRklSilVHPDKN~ 87 (250)
T KOG1150|consen 31 DSVLTSKQQIERLLRPGSTYFNLNPFEVLQIDPE--VTDEDIKKRYRKLSILVHPDKNP 87 (250)
T ss_pred hcccCcHHHHHHHhcCCccccccChHHHHhcCCC--CCHHHHHHHHHhhheeecCCCCc
Confidence 678999999999999 3 788999999995 99999999999999999999995
No 5
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=98.62 E-value=1.8e-08 Score=103.67 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=32.8
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.|||++|||+|+ +++++|||+|||+|++.|||||
T Consensus 28 ~d~Y~vLGV~~~--As~~eIKkAYrkla~k~HPDk~ 61 (421)
T PTZ00037 28 EKLYEVLNLSKD--CTTSEIKKAYRKLAIKHHPDKG 61 (421)
T ss_pred hhHHHHcCCCCC--CCHHHHHHHHHHHHHHHCCCCC
Confidence 699999999995 9999999999999999999997
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=98.56 E-value=4.1e-08 Score=74.49 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=32.1
Q ss_pred cchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 441 DHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 441 D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
|||+||||+++ ++.++||+.||+++..+|||++-
T Consensus 1 ~~y~iLgl~~~--~~~~eik~~y~~l~~~~HPD~~~ 34 (64)
T PF00226_consen 1 NPYEILGLPPD--ASDEEIKKAYRRLSKQYHPDKNS 34 (64)
T ss_dssp HHHHHCTSTTT--SSHHHHHHHHHHHHHHTSTTTGT
T ss_pred ChHHHCCCCCC--CCHHHHHHHHHhhhhccccccch
Confidence 69999999995 99999999999999999999974
No 7
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.1e-06 Score=85.55 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHhccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 432 EVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 432 EV~RIl~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.++|=++-.|=||||||+| ++++++|||+||++++++||||+
T Consensus 91 ~~~~~~~~fDPyEILGl~p--gas~~eIKkaYR~LSik~HPDK~ 132 (230)
T KOG0721|consen 91 NSRRERQKFDPYEILGLDP--GASEKEIKKAYRRLSIKYHPDKQ 132 (230)
T ss_pred hhhHHhhcCCcHHhhCCCC--CCCHHHHHHHHHHhhhhhCCCcC
Confidence 3446667799999999999 59999999999999999999996
No 8
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=1.1e-06 Score=87.60 Aligned_cols=36 Identities=25% Similarity=0.217 Sum_probs=33.5
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
-.|+|+|||++++ ++.++|||+|||+|++-||||+=
T Consensus 30 ~~~LYdVLgl~k~--at~d~IKKaYR~L~~k~HPD~~g 65 (279)
T KOG0716|consen 30 RLDLYDVLGLPKT--ATKDEIKKAYRKLALKYHPDKNG 65 (279)
T ss_pred hhHHHHHhCCCcc--cchHHHHHHHHHHHHHhCCCcCC
Confidence 4799999999996 99999999999999999999973
No 9
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.15 E-value=9.5e-07 Score=99.56 Aligned_cols=36 Identities=19% Similarity=0.047 Sum_probs=33.8
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
..|||++|||+|+ +++++|||+|||+|++.|||||-
T Consensus 572 d~dYYdILGVs~d--AS~~EIKKAYRKLAlkyHPDKN~ 607 (1136)
T PTZ00341 572 DTLFYDILGVGVN--ADMKEISERYFKLAENYYPPKRS 607 (1136)
T ss_pred CCChHHHcCCCCC--CCHHHHHHHHHHHHHHhCCCCCC
Confidence 3899999999996 99999999999999999999973
No 10
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=97.94 E-value=5.1e-06 Score=81.07 Aligned_cols=35 Identities=31% Similarity=0.315 Sum_probs=33.0
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|+|++||++++ +|.++|||+|||++++.||||.-
T Consensus 200 ~~ay~vLgv~~~--as~~eIk~aYr~L~~~~HPDk~~ 234 (267)
T PRK09430 200 EDAYKVLGVSES--DDDQEIKRAYRKLMSEHHPDKLV 234 (267)
T ss_pred HhHHHHcCCCCC--CCHHHHHHHHHHHHHHhCcCCCC
Confidence 799999999995 99999999999999999999953
No 11
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=5.6e-06 Score=81.86 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.9
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||+++ ++.++||++|||+|-+.|||-|-
T Consensus 43 ~d~Y~vLgv~~~--At~~EIK~Af~~LaKkyHPD~n~ 77 (288)
T KOG0715|consen 43 EDYYKVLGVSRN--ATLSEIKSAFRKLAKKYHPDVNK 77 (288)
T ss_pred cchhhhhCcCCC--CCHHHHHHHHHHHHHhhCCCCCC
Confidence 499999999995 99999999999999999999875
No 12
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=97.85 E-value=9.5e-06 Score=72.04 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=31.8
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.++|++|||++. ++.++||+.||++++..|||+.
T Consensus 65 ~eAy~ILGv~~~--As~~eIkkaYRrLa~~~HPDkg 98 (116)
T PTZ00100 65 SEAYKILNISPT--ASKERIREAHKQLMLRNHPDNG 98 (116)
T ss_pred HHHHHHcCCCCC--CCHHHHHHHHHHHHHHhCCCCC
Confidence 489999999995 9999999999999999999984
No 13
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.64 E-value=3.3e-05 Score=80.47 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=36.8
Q ss_pred HHHHHHhcc---ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCc
Q 011502 431 DEVVRLLNC---TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFC 474 (484)
Q Consensus 431 dEV~RIl~c---~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk 474 (484)
+--+|++.- .|||.||||.|+ ++--+|.|+|||+|.+.|||-
T Consensus 382 e~Akrlkkqs~kRDYYKILGVkRn--AsKqEI~KAYRKlAqkWHPDN 426 (504)
T KOG0624|consen 382 ERAKRLKKQSGKRDYYKILGVKRN--ASKQEITKAYRKLAQKWHPDN 426 (504)
T ss_pred HHHHHHHHHhccchHHHHhhhccc--ccHHHHHHHHHHHHHhcCCcc
Confidence 445677665 899999999995 999999999999999999993
No 14
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6.5e-05 Score=79.16 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=33.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+|||-|||+.++ ++.++|||+|||+||..|||++-
T Consensus 373 kd~ykilGi~~~--as~~eikkayrk~AL~~Hpd~~a 407 (486)
T KOG0550|consen 373 KDWYKILGISRN--ASDDEIKKAYRKLALVHHPDKNA 407 (486)
T ss_pred hhHHHHhhhhhh--cccchhhhHHHHHHHHhCCCcCc
Confidence 899999999996 89999999999999999999974
No 15
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00011 Score=73.95 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=32.8
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
-|-|+||||+|. ++.++|+|+||++|..-|||++-
T Consensus 33 enCYdVLgV~Re--a~KseIakAYRqLARrhHPDr~r 67 (329)
T KOG0722|consen 33 ENCYDVLGVARE--ANKSEIAKAYRQLARRHHPDRNR 67 (329)
T ss_pred hhHHHHhhhhhh--ccHHHHHHHHHHHHHHhCCcccC
Confidence 788999999996 79999999999999999999874
No 16
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=97.29 E-value=0.00012 Score=77.96 Aligned_cols=37 Identities=19% Similarity=0.158 Sum_probs=33.7
Q ss_pred ccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 438 NCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 438 ~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+..|=|||||+... .++.||||.||+++|++||||--
T Consensus 96 ~~fDPyEILGI~~~--ts~rdik~~yr~Ls~KfhpdK~~ 132 (610)
T COG5407 96 RGFDPYEILGIDQD--TSERDIKKRYRMLSMKFHPDKAP 132 (610)
T ss_pred cCCChHHhhcccCC--CcHHHHHHHHHhheeecChhhcC
Confidence 34899999999995 99999999999999999999953
No 17
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.96 E-value=0.016 Score=67.47 Aligned_cols=37 Identities=11% Similarity=-0.028 Sum_probs=29.8
Q ss_pred ccchhhcCcCCCCC-C-ChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFEN-V-DVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~-i-d~s~LKKeYRKkALlvHPdk~~ 476 (484)
-+.||||.++-... - +++-|||.|||+|++.|||||-
T Consensus 1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNP 1319 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNP 1319 (2235)
T ss_pred HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCc
Confidence 46799999887621 2 3478999999999999999984
No 18
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=93.97 E-value=0.028 Score=59.46 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=20.9
Q ss_pred CChHHHHHHHhhhhhhcCCCcc
Q 011502 454 VDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 454 id~s~LKKeYRKkALlvHPdk~ 475 (484)
|+++.+||+|||-.|.|||||-
T Consensus 400 Vtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 400 VTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred cCHHHHHHHHHhhhheeCcccc
Confidence 8899999999999999999994
No 19
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=93.04 E-value=0.027 Score=57.95 Aligned_cols=49 Identities=33% Similarity=0.544 Sum_probs=0.0
Q ss_pred HHHHHh-hhhhhHHHHHHhhcccccccchhHHHHHHHHH---HHHHHHHhhhhHHHHHHH
Q 011502 298 ILLWLY-GSFWTTFFVIFLGGLAFKFTHERLALFITTMY---SIYCAWTYVGWLGLLLAL 353 (484)
Q Consensus 298 vILWmY-gsFW~T~~liI~GG~~FsL~HeR~vlli~t~Y---s~YCv~v~VGWLGl~Lsl 353 (484)
.+||-| ++|||...+. ++|.| -.++||+++| +-+-+-+-+-||=|||||
T Consensus 127 ~lLr~~GAs~WtiLaFc----LAF~L---aivlLIIAv~L~qaWfT~L~dL~WL~LFlai 179 (381)
T PF05297_consen 127 WLLRELGASFWTILAFC----LAFLL---AIVLLIIAVLLHQAWFTILVDLYWLLLFLAI 179 (381)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHhhhHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 5788754332 45655 3567777776 456677788899999885
No 20
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=91.43 E-value=0.11 Score=53.45 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=32.2
Q ss_pred ccchhhcCcCCC-CCCChHHHHHHHhhhhhhcCCCcc
Q 011502 440 TDHYSALGLSRF-ENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 440 ~D~YevLGv~r~-~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.|+|.+|||+++ -.++++.|+|+-+|+.++.||||.
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~ 79 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKT 79 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccch
Confidence 899999999988 347788888899999999999997
No 21
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=88.98 E-value=11 Score=35.38 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccc----cchhHHHHHHHHHHHHHHHHhhhh
Q 011502 288 ALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF----THERLALFITTMYSIYCAWTYVGW 346 (484)
Q Consensus 288 gllIValfgIvILWmYgsFW~T~~liI~GG~~FsL----~HeR~vlli~t~Ys~YCv~v~VGW 346 (484)
.++|-++.--+++.+-|.+|+.....+++|...-+ .|-|=.--++.-|++|+++.--.|
T Consensus 60 ~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g~y~~~~~~~iay~vf~~~~~g~~ 122 (186)
T PF09605_consen 60 AFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKGGYKSKKRNTIAYAVFSLGYMGPY 122 (186)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhhH
Confidence 45666666666788889999999999999875432 333434456777999998776333
No 22
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=87.14 E-value=4.2 Score=44.28 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Q 011502 247 TSFFSVIWCSILSVIAMVGMFK----FLMVLVVAALVAFFIGF 285 (484)
Q Consensus 247 as~f~ImWc~flS~tSm~c~~y----~Ll~lg~Aa~vv~flG~ 285 (484)
.++.++++|.++.+++..+.-+ +++++.+.++++.|.-+
T Consensus 51 ~s~~~~~~~~~~~~~~l~~~~~~~k~~~~~l~~~sa~~~Yf~~ 93 (545)
T PRK11598 51 ASMPVVAFSVINIVFTLLSFPWLRRPLACLFILVGAAAQYFMM 93 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888887776544 34555555555555433
No 23
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=87.14 E-value=14 Score=34.99 Aligned_cols=94 Identities=15% Similarity=0.329 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------------HHHHHHHHHHHHHHHhhhhhhHHHHH
Q 011502 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFAL------------ALVVVALSGTILLWLYGSFWTTFFVI 313 (484)
Q Consensus 246 tas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tp------------gllIValfgIvILWmYgsFW~T~~li 313 (484)
+..+|.++-.-+.-+++|.++.-.-..+-...++..+++-++ .++|.++.--+++.+-|++|+.....
T Consensus 8 ~igiftaiyfvi~~v~~~l~~~~~~~~~~~~p~i~al~~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G~~~~~~~~~ 87 (189)
T TIGR02185 8 FIGLLTAIYFAIQFIVGMLTMTTGFFAHLFSPGITAFLVGIIFFLMVAKVPKRGVIFIFGILLGLLFFLMGMYWPMIISS 87 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhHHHhhhhhhcCCccHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 455666555555555666666532222222333333333322 34455555555667888999888877
Q ss_pred Hhhcccccc----cchhHHHHHHHHHHHHH
Q 011502 314 FLGGLAFKF----THERLALFITTMYSIYC 339 (484)
Q Consensus 314 I~GG~~FsL----~HeR~vlli~t~Ys~YC 339 (484)
+++|..--+ .+-|=..-.+..|.+||
T Consensus 88 ii~gliaeli~~~g~Yks~~~~~ia~~~~~ 117 (189)
T TIGR02185 88 IIGGLLADIIASTGGYKNKRKVTIAYVLFF 117 (189)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHHHH
Confidence 887753222 22232234455677776
No 24
>PRK10263 DNA translocase FtsK; Provisional
Probab=86.79 E-value=4.3 Score=48.82 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=5.4
Q ss_pred hhhHHHHHHhh
Q 011502 306 FWTTFFVIFLG 316 (484)
Q Consensus 306 FW~T~~liI~G 316 (484)
+|+.+++|+.|
T Consensus 170 llLIGLiLlTg 180 (1355)
T PRK10263 170 VWAAGLTLFTG 180 (1355)
T ss_pred HHHHHHHHHHh
Confidence 55555544444
No 25
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=86.38 E-value=2.2 Score=35.98 Aligned_cols=36 Identities=28% Similarity=0.509 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011502 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY 303 (484)
Q Consensus 268 y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmY 303 (484)
.+++.+.+|++++.++|..++++.+|+++.++-++|
T Consensus 11 ~l~~~~l~~~lvG~~~g~~~~~l~~~l~~~l~wh~~ 46 (90)
T PF11808_consen 11 RLLLLLLAAALVGWLFGHLWWALLLGLLLYLFWHLY 46 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 455667788888889999998888888877764333
No 26
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.24 E-value=2.6 Score=38.47 Aligned_cols=47 Identities=26% Similarity=0.222 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccch
Q 011502 270 LMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHE 325 (484)
Q Consensus 270 Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL~He 325 (484)
|++.|+++++. .|..+|.++.++.|++++= -|++++.+|+.|.....
T Consensus 18 li~~gI~~Lv~--~~~~l~~~~s~~lg~~~lA-------lg~vL~~~g~~~~~~~~ 64 (191)
T PF04156_consen 18 LIASGIAALVL--FISGLGALISFILGIALLA-------LGVVLLSLGLLCLLSKR 64 (191)
T ss_pred HHHHHHHHHHH--HHhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHcc
Confidence 44444444333 3333555555555554431 25666666665554333
No 27
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.26 E-value=1.2 Score=40.39 Aligned_cols=30 Identities=17% Similarity=0.102 Sum_probs=27.4
Q ss_pred hhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 444 SALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 444 evLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
-||||+|. .+.+-||.+.||.-+.-|||+-
T Consensus 60 lIL~v~~s--~~k~KikeaHrriM~~NHPD~G 89 (112)
T KOG0723|consen 60 LILGVTPS--LDKDKIKEAHRRIMLANHPDRG 89 (112)
T ss_pred HHhCCCcc--ccHHHHHHHHHHHHHcCCCcCC
Confidence 38999985 9999999999999999999985
No 28
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=82.08 E-value=8.7 Score=34.05 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhcccccccchhHHHHHHHHHHHHHHH
Q 011502 266 MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAFKFTHERLALFITTMYSIYCAW 341 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T-~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~ 341 (484)
.-|+++.+++.+.. .++--.++++++.++.+|.|-+.|.. .--+.++|.-+.-++.-.++++.++..+|+..
T Consensus 42 ~NY~~i~~~~~~~~----ll~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (153)
T PF03208_consen 42 TNYLLIFLLLFLIF----LLTNPFFLLVLLLVVALWAFIYKSRKENDPIVIGGRKISPRQVLLALLIVSILLLFFTS 114 (153)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcccCcchhccCcccCHHHHHHHHHHHHHHHHHHHh
Confidence 44666665554432 33334445555667777888888876 34456677777777777777777777777744
No 29
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=80.16 E-value=1.3 Score=45.09 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=30.4
Q ss_pred cchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 441 DHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 441 D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.||.+|||.. ++|.++++.+|.++|-.+|||..
T Consensus 48 e~fril~v~e--~~~adevr~af~~lakq~hpdsg 80 (342)
T KOG0568|consen 48 ECFRILGVEE--GADADEVREAFHDLAKQVHPDSG 80 (342)
T ss_pred HHHHHhcccc--cCchhHHHHHHHHHHHHcCCCCC
Confidence 5799999987 79999999999999999999964
No 30
>KOG4800 consensus Neuronal membrane glycoprotein/Myelin proteolipid protein [Function unknown]
Probab=77.91 E-value=22 Score=36.05 Aligned_cols=95 Identities=20% Similarity=0.399 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHH---------Hhhccc
Q 011502 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVI---------FLGGLA 319 (484)
Q Consensus 249 ~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~li---------I~GG~~ 319 (484)
+..|=|-+.++.++++|++|..+- |+|+ .|.+| |++|| .--||+|+-.. +.|++.
T Consensus 58 v~ii~~~F~~~~~~wI~ifqyvf~-~iaa---~f~~y----------G~~il--~egF~ttgA~r~~~g~~k~r~cGr~V 121 (248)
T KOG4800|consen 58 VLIIEQYFSINIVSWICIFQYVFY-GIAA---FFFLY----------GILIL--AEGFYTTGAVRKLYGDFKTRMCGRCV 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHH----------hHHHH--hhhhhhhhhHHHHHhhhhceecCcch
Confidence 566778899999999999987543 3333 33344 33332 34578888776 455541
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHHHHHHhhhccccCCC
Q 011502 320 FKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKT 376 (484)
Q Consensus 320 FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDiL~~lLq~nv~~~~~ 376 (484)
+ .+++..-|.. -+-|+++ +.|..==+.+|+--++.-++-.
T Consensus 122 -s------~~f~~lTy~l-----~f~W~~I-----~~f~~v~v~iy~~fw~~c~n~a 161 (248)
T KOG4800|consen 122 -S------GVFVGLTYLL-----AFVWLLI-----FGFSAVPVFIYFNFWTTCSNIA 161 (248)
T ss_pred -h------hhhhHHHHHH-----HHHHHHH-----HHHHHHHHHHHHHHHHHhhccc
Confidence 0 0233333321 2478888 5777777777877766555533
No 31
>TIGR00947 2A73 probable bicarbonate transporter, IctB family. This family of proteins is suggested to transport inorganic carbon (HCO3-), based on the phenotype of a mutant of IctB in Synechococcus sp. strain PCC 7942. Bicarbonate uptake is used by many photosynthetic organisms including cyanobacteria. These organisms are able to concentrate CO2/HCO3- against a greater than ten-fold concentration gradient. Cyanobacteria may have several such carriers operating with different efficiencies. Note that homology to various O-antigen ligases, with possible implications for mutant cell envelope structure, might allow alternatives to the interpretation of IctB as a bicarbonate transport protein.
Probab=77.53 E-value=70 Score=33.48 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHH
Q 011502 330 FITTMYSIYCAWTYVGWLGLLLAL 353 (484)
Q Consensus 330 li~t~Ys~YCv~v~VGWLGl~Lsl 353 (484)
++.+..+++.-.+|-||+|++.++
T Consensus 205 ~~l~~~~L~lT~SRg~wl~l~~~~ 228 (425)
T TIGR00947 205 LGVNALCLLFTYSRGGWLGLLAAL 228 (425)
T ss_pred HHHHHHHHHHhcchhhHHHHHHHH
Confidence 344567777888888888866543
No 32
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=77.13 E-value=1.7 Score=40.17 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=38.3
Q ss_pred HHHHHHHhcc---ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcccc
Q 011502 430 EDEVVRLLNC---TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCFA 477 (484)
Q Consensus 430 ~dEV~RIl~c---~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~~ 477 (484)
-+|...++++ .|.|.+||+++. .+...+|++||+.-..-|||+--+
T Consensus 100 ~~e~~~~~~~~~~~~~l~~l~~~~~--~~~~~i~~~~r~l~~e~~~d~a~~ 148 (174)
T COG1076 100 REELEEAREQLDREDALKVLGVEIK--ADQDAIKKAYRKLLSEQHPDKAAA 148 (174)
T ss_pred HHHHHHHHHcccchhHHHHhcCchh--hhHHHHHHHHHHHHHhcCHHHHHH
Confidence 4556666666 478999999995 899999999999999999997544
No 33
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=75.80 E-value=8 Score=37.80 Aligned_cols=17 Identities=29% Similarity=0.292 Sum_probs=9.9
Q ss_pred HHHHHHHhccccchhhc
Q 011502 430 EDEVVRLLNCTDHYSAL 446 (484)
Q Consensus 430 ~dEV~RIl~c~D~YevL 446 (484)
.|-.+|++.+...|+.|
T Consensus 182 ~Dl~E~~~as~~~y~~l 198 (284)
T PF12805_consen 182 VDLFERALASHYDYEEL 198 (284)
T ss_pred HHHHHHHHhccccHHHH
Confidence 45556666665556555
No 34
>PRK13706 conjugal transfer pilus acetylation protein TraX; Provisional
Probab=75.72 E-value=86 Score=31.89 Aligned_cols=99 Identities=12% Similarity=-0.026 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011502 214 NHLGHFAKIMLLLSMLWLDCTIRGI----------DSFMRMGTTSFFSVI-WCSILSVIAMVGMFKFLMVLVVAALVAFF 282 (484)
Q Consensus 214 ~~~~~~g~L~lLll~~W~DC~iRGf----------dSf~rlGtas~f~Im-Wc~flS~tSm~c~~y~Ll~lg~Aa~vv~f 282 (484)
.|+-.+||+..=++.+ +.|| .-..||.-.++.+-+ +..+ .+...-..++..+.++..++..
T Consensus 58 ~~l~~iGRlAfPiFaf-----VeGfNla~hT~~r~kY~~RL~ifAlIseipf~l~---~~~~~~~NI~fTLalgl~~l~~ 129 (248)
T PRK13706 58 EWMFLAGRGAFPLFAL-----VWGLNLSRHAHIRQPAINRLWGWGIIAQFAYYLA---GFPWYEGNILFAFAVAAQVLTW 129 (248)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHhhccccchHHHHHHHHHHHHHHHHHHHHHH---hcccccCcHHHHHHHHHHHHHH
Confidence 4677788888777765 8888 345666555444321 1111 1112222555555555555555
Q ss_pred HhhhHHHHHHH--HHHHHH-HHHhhhhhhHHHHHHhhcccc
Q 011502 283 IGFALALVVVA--LSGTIL-LWLYGSFWTTFFVIFLGGLAF 320 (484)
Q Consensus 283 lG~tpgllIVa--lfgIvI-LWmYgsFW~T~~liI~GG~~F 320 (484)
+-.......++ +.+++. .++...++..|.++|++=+.|
T Consensus 130 ~e~~~~~~~~~~il~~~l~~~~~~~DYg~~gvl~il~fy~~ 170 (248)
T PRK13706 130 CETRSGWRTAAAILLMALWGPLSGTSYGIAGLLMLAVSHRL 170 (248)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 53321111111 112222 233465777788888887765
No 35
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=73.96 E-value=77 Score=29.55 Aligned_cols=38 Identities=18% Similarity=0.138 Sum_probs=20.4
Q ss_pred HHHHhhhh-hhhhhhhhhhcchhHHHHHHHHHHHHHHHH
Q 011502 226 LSMLWLDC-TIRGIDSFMRMGTTSFFSVIWCSILSVIAM 263 (484)
Q Consensus 226 ll~~W~DC-~iRGfdSf~rlGtas~f~ImWc~flS~tSm 263 (484)
.+..|.-| ..+.-..-.++.--.+|.+.....++.+..
T Consensus 52 ~~~~~l~~~~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~ 90 (212)
T cd06181 52 GLVILLFCCRIKRRSSPANLILLFLFTALMGVTLGPILS 90 (212)
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555 444445555665556666666555554433
No 36
>PF03208 PRA1: PRA1 family protein; InterPro: IPR004895 This family includes yeast hypothetical proteins and the uncharacterised rat prenylated rab acceptor protein PRA1.
Probab=73.93 E-value=16 Score=32.42 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccch
Q 011502 289 LVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHE 325 (484)
Q Consensus 289 llIValfgIvILWmYgsFW~T~~liI~GG~~FsL~He 325 (484)
++++++++++++|+.+.... .+..+..+....+=|+
T Consensus 99 ~~~~~~~~~~~l~~~~~~~~-l~~~l~~~~~lvl~HA 134 (153)
T PF03208_consen 99 LLALLIVSILLLFFTSAGLT-LFWSLGASVLLVLLHA 134 (153)
T ss_pred HHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHH
Confidence 45566667777777665333 3333333344444444
No 37
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=72.74 E-value=32 Score=37.47 Aligned_cols=24 Identities=13% Similarity=-0.006 Sum_probs=16.0
Q ss_pred ccccchhHHHHHHHHHHHHHHHHh
Q 011502 320 FKFTHERLALFITTMYSIYCAWTY 343 (484)
Q Consensus 320 FsL~HeR~vlli~t~Ys~YCv~v~ 343 (484)
|..+|..+--+++-.|-+|....|
T Consensus 176 ~~r~~~~~~~~~~P~~~~~~~~~y 199 (522)
T PRK09598 176 FDKHAKFLGGLILPWSYSVNTFRV 199 (522)
T ss_pred HHHhHHHHHhhcCcHHHHHHHHHH
Confidence 455788777777777777766443
No 38
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=71.32 E-value=73 Score=36.65 Aligned_cols=79 Identities=18% Similarity=0.299 Sum_probs=46.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhh---hhhhHHHHHHhhc--ccccccchhH------HHHHHHHHHHHHH----HHhhh
Q 011502 281 FFIGFALALVVVALSGTILLWLYG---SFWTTFFVIFLGG--LAFKFTHERL------ALFITTMYSIYCA----WTYVG 345 (484)
Q Consensus 281 ~flG~tpgllIValfgIvILWmYg---sFW~T~~liI~GG--~~FsL~HeR~------vlli~t~Ys~YCv----~v~VG 345 (484)
.-+..-+++|...++++.++-+++ ++|++..+++.|= .+|.-++-|- .+.++.|+.++.+ .+-.-
T Consensus 349 ~lv~~r~~i~~s~~~~i~~~~~~~~~~~~~~~~~~l~s~~~~~~~l~~~s~rs~i~~~g~~~~~~~m~~~l~l~~~~~~~ 428 (700)
T COG1480 349 LLVFLRIAIFSSSMIAIALLYLFGGSYNSEIALIALLSSFSALVLLRKMSRRSDILKSGLFLALMNMLLLLSLIFAFTLS 428 (700)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455566666667777777777 6788888887743 3333343332 2233344444444 56666
Q ss_pred hHHHHHHHhhhhhh
Q 011502 346 WLGLLLALNLSFVS 359 (484)
Q Consensus 346 WLGl~LslNLsFlS 359 (484)
|.+++..+=.+|||
T Consensus 429 ~~~~~~~~~~~fls 442 (700)
T COG1480 429 WYDALQDAIFAFLS 442 (700)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666665
No 39
>PRK11560 phosphoethanolamine transferase; Provisional
Probab=68.50 E-value=54 Score=36.21 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHHH
Q 011502 247 TSFFSVIWCSILSVIAMVG------MFKFLMVLVVAALVAFFIGFALAL 289 (484)
Q Consensus 247 as~f~ImWc~flS~tSm~c------~~y~Ll~lg~Aa~vv~flG~tpgl 289 (484)
.++.++++++++.+++.++ +.-+++.+.+.++++.|.-.+.|+
T Consensus 49 ~~~~~~~~~~~~~~~~l~~~~~~~~~K~~~~~l~l~sa~~~Yf~~~ygv 97 (558)
T PRK11560 49 VVELAATVLVTFFLLRLLSLFGRRFWRVLASLLVLFSAAASYYMTFFNV 97 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5677788888888887777 333566666667777776555443
No 40
>PF13994 PgaD: PgaD-like protein
Probab=68.16 E-value=23 Score=31.92 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=18.4
Q ss_pred hcchhHHHHHHHHHHHHHHHHH
Q 011502 243 RMGTTSFFSVIWCSILSVIAMV 264 (484)
Q Consensus 243 rlGtas~f~ImWc~flS~tSm~ 264 (484)
|+....+-++.|+.|+.++.+.
T Consensus 14 r~~~~~lT~~~W~~~~yL~~pl 35 (138)
T PF13994_consen 14 RLIDYFLTLLFWGGFIYLWRPL 35 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888899999999887764
No 41
>PF12036 DUF3522: Protein of unknown function (DUF3522); InterPro: IPR021910 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 220 to 787 amino acids in length.
Probab=66.99 E-value=22 Score=33.74 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.6
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhh
Q 011502 282 FIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 282 flG~tpgllIValfgIvILWmYg 304 (484)
=++++.+..++|+..+++.|+|.
T Consensus 115 ~~~~~~~Pi~~~~~i~~~~w~~r 137 (186)
T PF12036_consen 115 SLWNTIGPILIGLLILLVSWLYR 137 (186)
T ss_pred cchhhHHHHHHHHHHHHHHHhee
Confidence 46889999999999999999997
No 42
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=66.53 E-value=26 Score=34.58 Aligned_cols=18 Identities=22% Similarity=0.669 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011502 252 VIWCSILSVIAMVGMFKF 269 (484)
Q Consensus 252 ImWc~flS~tSm~c~~y~ 269 (484)
++=-+||.+++.+|++.|
T Consensus 13 LliG~~f~ligaIGLlRf 30 (197)
T PRK12585 13 ILIGGLLSILAAIGVIRL 30 (197)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333566677777777654
No 43
>PLN02922 prenyltransferase
Probab=65.91 E-value=17 Score=36.93 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=9.1
Q ss_pred hhhhhhhhhhcc
Q 011502 234 TIRGIDSFMRMG 245 (484)
Q Consensus 234 ~iRGfdSf~rlG 245 (484)
..||.|..-|-|
T Consensus 76 ~~~G~D~~~~~~ 87 (315)
T PLN02922 76 ADTGVDKNKKES 87 (315)
T ss_pred hccCcCcccCCC
Confidence 578999876665
No 44
>TIGR02755 TraX_Ftype type-F conjugative transfer system pilin acetylase TraX. TraX is responsible for the acetylation of the F-pilin TraA during conjugative plasmid transfer. The purpose of this acetylation is unclear, but the reported transcriptional regulation of TraX may indicate that it is involved in the process of pilu extension/retraction.
Probab=64.33 E-value=1.3e+02 Score=30.05 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=27.2
Q ss_pred hhhhhhHHHHHHhhcccc-cccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHH
Q 011502 303 YGSFWTTFFVIFLGGLAF-KFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDA 362 (484)
Q Consensus 303 YgsFW~T~~liI~GG~~F-sL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDi 362 (484)
-..++..|.+++++=+.| .+++.+-... .-.+|+|+++++|.+ .+|+
T Consensus 129 ~~dYg~~Gvlli~~~y~~~~~r~~~~~~~-----------~~~~l~~~~~~ln~~--~~~~ 176 (224)
T TIGR02755 129 GTSYGIAGLLMLAGALRLYRVRDTEERLA-----------LFACLLLLVPALNLR--TSDA 176 (224)
T ss_pred HhhhhHHHHHHHHHHHHHHHHhccHHHHH-----------HHHHHHHHHHHhccc--cchH
Confidence 445666677777776654 2222222211 235788889999983 3454
No 45
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=62.40 E-value=1.2e+02 Score=36.20 Aligned_cols=99 Identities=19% Similarity=0.246 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----hhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHH
Q 011502 210 PVALNHLGHFAKIMLLLSML-----WLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMV------GMFKFLM-VLVVAA 277 (484)
Q Consensus 210 PiV~~~~~~~g~L~lLll~~-----W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~------c~~y~Ll-~lg~Aa 277 (484)
|.+..|++.+-.++.+++.+ |.--.+|+|....=++... +.++|-.+|-+.|-- .+-.+.+ .+++++
T Consensus 11 p~~~~~~~~~~~~~~l~~~v~p~~~~~~~~~~~~~~~~~~~~~~-~sl~~g~~Ll~lA~gL~rr~r~Aw~~~~~~~~~~~ 89 (1094)
T PRK02983 11 PAAAGWTVGVIATLSLLASVSPLLRWIIRVPREFVDDYLFNFPD-TSLAWAFVLALLAAALRRRKRAAWWVLLAYLVLAA 89 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHhcChhhhCCCc-hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 66677777766666666544 4444555554333222222 556666555555532 0111111 122211
Q ss_pred HHHHHHh----------------hhHHHHHHHHHHHHHHHHhhhhhhH
Q 011502 278 LVAFFIG----------------FALALVVVALSGTILLWLYGSFWTT 309 (484)
Q Consensus 278 ~vv~flG----------------~tpgllIValfgIvILWmYgsFW~T 309 (484)
++....| ..+++++-+++.++++|+...|+.-
T Consensus 90 ~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~L~~~R~~F~~~ 137 (1094)
T PRK02983 90 LLNVALLALGVNTAAETFGENSLSIIGFAVHVVAIVLLVLARREFPAR 137 (1094)
T ss_pred HHHHHHHhcccccccccccchhhhHHHHHHHHHHHHHHHHHHhhccCC
Confidence 1111111 1345666777778888888888774
No 46
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=61.50 E-value=73 Score=27.03 Aligned_cols=60 Identities=22% Similarity=0.521 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHhhhhh
Q 011502 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALV-VVALSGTILLWLYGSFW 307 (484)
Q Consensus 246 tas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgll-IValfgIvILWmYgsFW 307 (484)
.|.||..+|+..=-+---. + .+++...+.+.+..+++..+++. ++.+..-+++=|+|+.|
T Consensus 41 ~Af~f~~~w~l~r~mw~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~ 101 (108)
T PF10947_consen 41 WAFFFGPLWLLYRKMWLYA-I-IFLALLVALAIILILLGFPPGLGLGLSLAISLFFGMFANYW 101 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777766554333 2 22222233333333443322222 23333334444566665
No 47
>PLN00012 chlorophyll synthetase; Provisional
Probab=61.39 E-value=58 Score=34.25 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 011502 286 ALALVVVALSGTILLWLYG 304 (484)
Q Consensus 286 tpgllIValfgIvILWmYg 304 (484)
.|-++++|++|+++.|+|-
T Consensus 196 ~~~~~~l~l~gi~l~~~YS 214 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYS 214 (375)
T ss_pred cHHHHHHHHHHHHHhhhhc
Confidence 3567778888888888886
No 48
>PF01098 FTSW_RODA_SPOVE: Cell cycle protein; InterPro: IPR001182 A number of prokaryotic integral membrane proteins involved in cell cycle processes have been found to be structurally related [, ]. These proteins include, the Escherichia coli and related bacteria cell division protein ftsW and the rod shape-determining protein rodA (or mrdB), the Bacillus subtilis stage V sporulation protein E (spoVE), the B. subtilis hypothetical proteins ywcF and ylaO and the Cyanophora paradoxa cyanelle ftsW homolog.; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=60.81 E-value=93 Score=31.49 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHh-hhhhhhhhhhhhhcchhH
Q 011502 216 LGHFAKIMLLLSMLW-LDCTIRGIDSFMRMGTTS 248 (484)
Q Consensus 216 ~~~~g~L~lLll~~W-~DC~iRGfdSf~rlGtas 248 (484)
..-.+.+++|++... .+-.+.|=.+.+++|+-+
T Consensus 68 ~~~~~~l~lL~l~~~~~g~~v~Ga~rWi~lG~~s 101 (358)
T PF01098_consen 68 ILYLGSLILLLLVLFPFGTEVNGARRWIRLGGFS 101 (358)
T ss_pred HhhHHHHHHHHHHHcccccccCCceEEEEeeeec
Confidence 344577788888878 899999999999999654
No 49
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=60.04 E-value=2.8e+02 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=22.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011502 322 FTHERLALFITTMYSIYCAWTYVGWLGLLLAL 353 (484)
Q Consensus 322 L~HeR~vlli~t~Ys~YCv~v~VGWLGl~Lsl 353 (484)
..|...-.+...+|.+|.+-+.|-=|-+|.||
T Consensus 579 ~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAm 610 (743)
T TIGR00870 579 NEHKFTEFVGLLLFGAYNVIMYILLLNMLIAM 610 (743)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544445667789999998888777777664
No 50
>PRK10490 sensor protein KdpD; Provisional
Probab=57.16 E-value=28 Score=39.77 Aligned_cols=52 Identities=29% Similarity=0.353 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------------hhhhhHHHHHHhhcccc
Q 011502 264 VGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY------------GSFWTTFFVIFLGGLAF 320 (484)
Q Consensus 264 ~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmY------------gsFW~T~~liI~GG~~F 320 (484)
+.|+|+|.++.+|. +.|+.||++. +++++++.|++ ..+|+|..++++-|...
T Consensus 428 i~mlyll~Vll~A~----~~G~~pai~a-avls~l~~nfFF~~P~~Tf~v~~~~~~~t~~v~l~va~v~ 491 (895)
T PRK10490 428 LVMLYLLGVVVVAL----FYGRWPSVVA-TVINVASFDLFFVAPRGTLAVSDVQYLLTFAVMLTVGLVI 491 (895)
T ss_pred HHHHHHHHHHHHHH----HhchHHHHHH-HHHHHHHHHheeCCCceEEEEcCcccHHHHHHHHHHHHHH
Confidence 44556555544443 3499998776 66777776654 12566665555544433
No 51
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=56.94 E-value=53 Score=33.05 Aligned_cols=73 Identities=25% Similarity=0.326 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccc---------cchhHHHHHHHHHHHHH----HHHhhhhHHHHHH
Q 011502 286 ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKF---------THERLALFITTMYSIYC----AWTYVGWLGLLLA 352 (484)
Q Consensus 286 tpgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL---------~HeR~vlli~t~Ys~YC----v~v~VGWLGl~Ls 352 (484)
..|.++||++-.+++= .-.||..+| +||.++.. ++.=+++-+..-=++=| ++.|.||.|
T Consensus 35 ~~~i~~~g~~v~~~~~-~p~f~p~am---lgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg---- 106 (254)
T PF07857_consen 35 CSGIFLVGLVVNLILG-FPPFYPWAM---LGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFG---- 106 (254)
T ss_pred HHHHHHHHHHHHHhcC-CCcceeHHH---hhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecc----
Confidence 3466666664333321 113444333 35555444 55555554443333333 244556666
Q ss_pred HhhhhhhhHHHHHH
Q 011502 353 LNLSFVSSDALIFF 366 (484)
Q Consensus 353 lNLsFlSnDiL~~l 366 (484)
++=.-.++++|||+
T Consensus 107 ~~~~~~~~~~Ln~~ 120 (254)
T PF07857_consen 107 LDPQVPSSPWLNYI 120 (254)
T ss_pred ccccccchhHHHHH
Confidence 55566778888875
No 52
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=56.76 E-value=88 Score=31.85 Aligned_cols=31 Identities=35% Similarity=0.251 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhh---------------hhhhHHHHHHhhc
Q 011502 287 LALVVVALSGTILLWLYG---------------SFWTTFFVIFLGG 317 (484)
Q Consensus 287 pgllIValfgIvILWmYg---------------sFW~T~~liI~GG 317 (484)
+.++++|++|+++.|.|. .|...|.+++.|+
T Consensus 114 ~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~ 159 (317)
T PRK13387 114 WLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLA 159 (317)
T ss_pred HHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHH
Confidence 557889999999999994 4566666655554
No 53
>TIGR02872 spore_ytvI sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein.
Probab=56.60 E-value=85 Score=30.39 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh
Q 011502 330 FITTMYSIYCAWTYVGWLGLLLALN 354 (484)
Q Consensus 330 li~t~Ys~YCv~v~VGWLGl~LslN 354 (484)
+++++-|+..--.--|++|++|+.=
T Consensus 303 p~~vl~~~l~g~~~~G~~G~~l~~~ 327 (341)
T TIGR02872 303 PLATLISMYIGLKLFGFLGLIFGPV 327 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777887788889999999753
No 54
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=56.11 E-value=85 Score=31.51 Aligned_cols=17 Identities=6% Similarity=-0.029 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011502 288 ALVVVALSGTILLWLYG 304 (484)
Q Consensus 288 gllIValfgIvILWmYg 304 (484)
.++++|+.|+++.|.|-
T Consensus 110 ~~l~lg~~~~~~~~~Yt 126 (284)
T TIGR00751 110 WFIALGALCIAAAITYT 126 (284)
T ss_pred HHHHHHHHHHHHhHhhc
Confidence 57889999999999995
No 55
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=55.63 E-value=37 Score=34.55 Aligned_cols=17 Identities=24% Similarity=0.354 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 011502 287 LALVVVALSGTILLWLY 303 (484)
Q Consensus 287 pgllIValfgIvILWmY 303 (484)
+-++++|++|+++-|+|
T Consensus 119 ~~~l~ig~~g~~~~~~Y 135 (304)
T PRK07419 119 WTVLGLVLLCCFLGYLY 135 (304)
T ss_pred HHHHHHHHHHHHHhhec
Confidence 45677788888888888
No 56
>PF13903 Claudin_2: PMP-22/EMP/MP20/Claudin tight junction
Probab=55.04 E-value=1e+02 Score=26.49 Aligned_cols=16 Identities=25% Similarity=0.650 Sum_probs=8.7
Q ss_pred HHHHHhhhhHHHHHHH
Q 011502 338 YCAWTYVGWLGLLLAL 353 (484)
Q Consensus 338 YCv~v~VGWLGl~Lsl 353 (484)
|--..+++|.|.++.+
T Consensus 149 ~gwSf~la~~a~~~~l 164 (172)
T PF13903_consen 149 YGWSFWLAWVAFILLL 164 (172)
T ss_pred ECHHHHHHHHHHHHHH
Confidence 3444446666666554
No 57
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=54.49 E-value=68 Score=32.22 Aligned_cols=18 Identities=17% Similarity=0.289 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+.++++|++|+++-|+|-
T Consensus 106 ~~~l~lg~~g~~~~~~Yt 123 (285)
T TIGR02235 106 ITVLALVGLCCFLGYLYQ 123 (285)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 557889999999999994
No 58
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=54.44 E-value=75 Score=32.20 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+.++.++++++++.|.|.
T Consensus 120 ~~~~~~~~~~~~lg~~Ys 137 (308)
T PRK12887 120 PWLLITVGISLLIGTAYS 137 (308)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 566788889999999997
No 59
>PRK10983 putative inner membrane protein; Provisional
Probab=53.73 E-value=2.7e+02 Score=28.92 Aligned_cols=27 Identities=15% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 011502 330 FITTMYSIYCAWTYVGWLGLLLALNLS 356 (484)
Q Consensus 330 li~t~Ys~YCv~v~VGWLGl~LslNLs 356 (484)
+++++-+++.--.--|++|+|++-=+.
T Consensus 308 ~~~il~~~~~G~~~fG~~G~~lgp~i~ 334 (368)
T PRK10983 308 MILILSGVIGGLIAFGMIGLFIGPVVL 334 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777778999999986544
No 60
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=52.81 E-value=99 Score=31.53 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 011502 285 FALALVVVALSGTILLWLYG 304 (484)
Q Consensus 285 ~tpgllIValfgIvILWmYg 304 (484)
++.|+++..+.+++.+++.|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~ 157 (366)
T PRK10245 138 FVAGLVLMVVSCLVTLELTG 157 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555544
No 61
>PF13398 Peptidase_M50B: Peptidase M50B-like
Probab=52.29 E-value=2.1e+02 Score=27.12 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH
Q 011502 291 VVALSGTILLWLYGSFWTTFFV 312 (484)
Q Consensus 291 IValfgIvILWmYgsFW~T~~l 312 (484)
++-...++++|.++..|+...+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~ 142 (200)
T PF13398_consen 121 ILFGALLIALWFFAPPWILRFI 142 (200)
T ss_pred HHHHHHHHHHHHHCCHHHHHHH
Confidence 3333445567778877776554
No 62
>PF14800 DUF4481: Domain of unknown function (DUF4481)
Probab=51.96 E-value=25 Score=36.71 Aligned_cols=17 Identities=24% Similarity=0.800 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011502 248 SFFSVIWCSILSVIAMV 264 (484)
Q Consensus 248 s~f~ImWc~flS~tSm~ 264 (484)
-||++|||.++|-..|+
T Consensus 72 I~yivlw~~l~Stl~l~ 88 (308)
T PF14800_consen 72 IFYIVLWANLYSTLQLF 88 (308)
T ss_pred HHHHHHHHHHHccchhh
Confidence 46899999999977665
No 63
>PRK01766 multidrug efflux protein; Reviewed
Probab=51.91 E-value=2.7e+02 Score=28.23 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhH
Q 011502 291 VVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWL 347 (484)
Q Consensus 291 IValfgIvILWmYgsFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWL 347 (484)
++.+....+.|+.-++...++-.+..|.+=.+...|..+.+..+ +.||+.+-..|+
T Consensus 353 v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~-~~~~~~i~~~~~ 408 (456)
T PRK01766 353 VVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFI-AYWVLGLPLGYI 408 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHH-HHHHHHHHHHHH
Confidence 33334444444444555556666777777778888888776654 566766655554
No 64
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=51.80 E-value=1.5e+02 Score=26.87 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=12.1
Q ss_pred ccccchhHHHHHHHHHHHHHHHH
Q 011502 320 FKFTHERLALFITTMYSIYCAWT 342 (484)
Q Consensus 320 FsL~HeR~vlli~t~Ys~YCv~v 342 (484)
|..||..+--.+.=.+.+|.+..
T Consensus 125 ~~Rn~~~l~~~~~P~~~i~s~~~ 147 (156)
T PF08019_consen 125 FFRNHKELRYLINPFNYIYSTVK 147 (156)
T ss_pred HHhchHHHHhCcCcHHHHHHHHH
Confidence 34577766555554455554433
No 65
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=51.75 E-value=36 Score=28.17 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=17.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011502 276 AALVAFFIGFALALVVVALSGTILLWLY 303 (484)
Q Consensus 276 Aa~vv~flG~tpgllIValfgIvILWmY 303 (484)
+|+++...|...+...++++|.+++|.-
T Consensus 51 ~gl~llv~G~~~~~~~~~v~G~~v~~~~ 78 (82)
T PF11239_consen 51 VGLALLVAGVVLSQPPLGVAGFVVMVAG 78 (82)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555556666788887777753
No 66
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=51.35 E-value=1.8e+02 Score=28.47 Aligned_cols=18 Identities=33% Similarity=0.482 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+-.+.++++++++.|.|.
T Consensus 105 ~~~~~~~~~~~~~~~~Yt 122 (276)
T PRK12882 105 PLCLAIALFNSLLLVLYA 122 (276)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555677788888888884
No 67
>PRK09776 putative diguanylate cyclase; Provisional
Probab=50.61 E-value=1.6e+02 Score=32.97 Aligned_cols=12 Identities=0% Similarity=0.036 Sum_probs=8.2
Q ss_pred cchhhcCcCCCC
Q 011502 441 DHYSALGLSRFE 452 (484)
Q Consensus 441 D~YevLGv~r~~ 452 (484)
.+++.+|.++..
T Consensus 438 ~~~~l~G~~~~~ 449 (1092)
T PRK09776 438 RMFELYEIPPHI 449 (1092)
T ss_pred HHHHHhCCCccc
Confidence 356778887753
No 68
>PF07332 DUF1469: Protein of unknown function (DUF1469); InterPro: IPR009937 This entry represents proteins found in hypothetical bacterial proteins where is is annotated as ycf49 or ycf49-like. The function is not known.
Probab=50.28 E-value=1.2e+02 Score=25.81 Aligned_cols=6 Identities=50% Similarity=0.838 Sum_probs=2.2
Q ss_pred HHHHHH
Q 011502 288 ALVVVA 293 (484)
Q Consensus 288 gllIVa 293 (484)
+.+||+
T Consensus 74 a~liv~ 79 (121)
T PF07332_consen 74 AFLIVA 79 (121)
T ss_pred HHHHHH
Confidence 333333
No 69
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=49.96 E-value=32 Score=34.98 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhH
Q 011502 263 MVGMFKFLMVLVVAALVAFFIGFAL 287 (484)
Q Consensus 263 m~c~~y~Ll~lg~Aa~vv~flG~tp 287 (484)
|..++.++++++++++++.++-.-|
T Consensus 1 M~~~~~~~~~~~~~~~~~~~~~~~~ 25 (409)
T TIGR00540 1 MFKVLFLFLLLIAGIVAGPMIAGHQ 25 (409)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555555555555555555554433
No 70
>PF09531 Ndc1_Nup: Nucleoporin protein Ndc1-Nup; InterPro: IPR019049 Ndc1 is a nucleoporin protein that is a component of the Nuclear Pore Complex, and, in fungi, also of the Spindle Pole Body. It consists of six transmembrane segments, three luminal loops, both concentrated at the N terminus and cytoplasmic domains largely at the C terminus, all of which are well conserved.
Probab=49.47 E-value=1e+02 Score=33.39 Aligned_cols=70 Identities=17% Similarity=0.122 Sum_probs=34.4
Q ss_pred hhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHHHHhh
Q 011502 235 IRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA-------LALVVVALSGTILLWLYG 304 (484)
Q Consensus 235 iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~t-------pgllIValfgIvILWmYg 304 (484)
.-++-+++.+|++-+-.++++..+.++.+....+..+..-......+.+... .-++.-+++|+++-|+|.
T Consensus 37 ~s~~~~~~~~~~~~~~~~~l~~~~~~i~~~r~~~~~v~~~~~~s~~~~l~~~l~~~~~l~~~~~y~~s~~l~~~~y~ 113 (602)
T PF09531_consen 37 SSWFWSWFPSGYTGIRSLLLFLSLLLIIVLRKSQLHVEPRPYSSRFAQLLHSLFSQSFLQTLLFYAVSGWLFAWVYI 113 (602)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666665555555555555544444433222221122222111 145556677777878774
No 71
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=49.27 E-value=12 Score=36.45 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHH------HHHhhhhhhHHHHHHhhc
Q 011502 286 ALALVVVALSGTIL------LWLYGSFWTTFFVIFLGG 317 (484)
Q Consensus 286 tpgllIValfgIvI------LWmYgsFW~T~~liI~GG 317 (484)
+|--||.|++|+=+ =|-||++|+.++.+++++
T Consensus 269 lP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~ 306 (318)
T TIGR00383 269 IPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIAL 306 (318)
T ss_pred HHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHH
Confidence 46667778888633 288999988777665553
No 72
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=49.05 E-value=1.5e+02 Score=29.15 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+-++++|++|+++.|.|.
T Consensus 113 ~~~~~~~~~~~~~~~~Ys 130 (293)
T PRK06080 113 WWLLLLGLLCIAAAILYT 130 (293)
T ss_pred HHHHHHHHHHHHHhhhhc
Confidence 456778888999999995
No 73
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=48.48 E-value=8.5 Score=42.07 Aligned_cols=102 Identities=15% Similarity=0.073 Sum_probs=57.8
Q ss_pred HhhcccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHHHHHHhhhccccCCCCCCCccccC-CCCCCCC
Q 011502 314 FLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKTDSSPEQTSG-MQAGPSF 392 (484)
Q Consensus 314 I~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDiL~~lLq~nv~~~~~~~~~Eq~~~-~~~~~~~ 392 (484)
..|=..+...|+-+.+++..+| .+|-+|.+++|++|+++|.|+...+.+-..+.-.=-.+..+. .+.+.-+
T Consensus 99 ~~g~~~~~~~l~~~g~~~l~l~--------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~s~kt~w~~~~k~l~~~i~l~ 170 (490)
T KOG0720|consen 99 YIGRVVGSVTLALFGLLLLWLY--------SFWGTVLFSFNLAFLSKDELITVYSVYSALSYKTWWGLTLKLLRAVILLD 170 (490)
T ss_pred eccccCcceeeccchHHHHHHH--------HhhcchhhhHHHHHhhhhheeccccceeeeccchhhhhcchhhhhhhhhh
Confidence 3444455556666677766554 479999999999999999999988844332210001111232 4444455
Q ss_pred CCCC----CCCCCCCC-CCCCCCCCCCCCCCCCccc
Q 011502 393 SNGE----PVHPAFSD-NVPGLSADRSPGVPSTSGD 423 (484)
Q Consensus 393 f~~e----~~p~s~sE-~~~~~~sd~~p~~~sTs~~ 423 (484)
|+.+ .++...-+ ..+-.++...++.++|+..
T Consensus 171 f~~~f~~~~~~~~~~~r~l~~vk~~~~e~g~~tv~~ 206 (490)
T KOG0720|consen 171 FSIYFERNKIIQQTADRPLEPVKDSGAEEGDETVES 206 (490)
T ss_pred cceeeeeehhhHHHHhhhcchhhhhccccCCCchhc
Confidence 6655 34433332 2233444444555555544
No 74
>PF01184 Grp1_Fun34_YaaH: GPR1/FUN34/yaaH family; InterPro: IPR000791 Several uncharacterised proteins are evolutionary related, including Yarrowia lipolytica (Candida lipolytica) glyxoxylate pathway regulator GPR1; yeast protein FUN34 and hypothetical proteins YCR10c and YDR384c; fission yeast hypothetical protein SpAC5D6.09c; Escherichia coli hypothetical protein yaaH; and Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) hypothetical protein Mth215. They are hydrophobic proteins that seem to contain six transmembrane regions and which could therefore be involved in transport. They have from 188 to 283 amino acids.; GO: 0016020 membrane
Probab=48.41 E-value=2.6e+02 Score=26.99 Aligned_cols=69 Identities=23% Similarity=0.441 Sum_probs=35.8
Q ss_pred HHHHHHHhhhhhhHHHHHHhh--ccccc-------ccchhHHH--H----HHHHHHHHHHHHhhhhHHHHHHHhhhhhhh
Q 011502 296 GTILLWLYGSFWTTFFVIFLG--GLAFK-------FTHERLAL--F----ITTMYSIYCAWTYVGWLGLLLALNLSFVSS 360 (484)
Q Consensus 296 gIvILWmYgsFW~T~~liI~G--G~~Fs-------L~HeR~vl--l----i~t~Ys~YCv~v~VGWLGl~LslNLsFlSn 360 (484)
|-.+.=.||-||+.--.+.+- |..-. .+++ +.+ + .+.++.+=+.+.-+-=..+|+.+.+.|+--
T Consensus 78 ~~tvf~~fG~FW~s~g~~~~~~~g~~~a~~~~~~~~~~a-~G~~l~~w~i~t~~~~~~s~r~~~~l~~lf~~l~~~f~ll 156 (211)
T PF01184_consen 78 GATVFGSFGAFWLSFGALLIPSFGIFAAYSEAPGQFNNA-IGFYLLAWAIFTFILFIASLRSNVVLFLLFFLLDLTFLLL 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhccccchhhhHH-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445666789999876555543 22212 2222 221 1 233333334455555566777777777655
Q ss_pred HHHHH
Q 011502 361 DALIF 365 (484)
Q Consensus 361 DiL~~ 365 (484)
.+-.+
T Consensus 157 a~~~~ 161 (211)
T PF01184_consen 157 AAGYF 161 (211)
T ss_pred HHHHH
Confidence 54443
No 75
>PF12351 Fig1: Ca2+ regulator and membrane fusion protein Fig1
Probab=48.13 E-value=1.7e+02 Score=27.72 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 011502 247 TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (484)
Q Consensus 247 as~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILW 301 (484)
.+-....++++.+++..+|++.--.+..++..++.-+++..=..=+|.-+.++-|
T Consensus 109 v~~~~l~l~~~~~~l~~~~a~~qH~a~~A~~~~~~~~s~g~v~~~~G~~a~~l~W 163 (182)
T PF12351_consen 109 VSKVALGLSFLSVLLWLVGAMWQHVASVASSTMIEDASMGIVKVKVGKAAMVLGW 163 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEeccchhHHhHHH
Confidence 4456667777778888888888888888777777776665533335555666666
No 76
>MTH00217 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=47.88 E-value=1.3e+02 Score=32.27 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=14.8
Q ss_pred HHHHHhhhhhhhHHHHHHhh
Q 011502 349 LLLALNLSFVSSDALIFFLK 368 (484)
Q Consensus 349 l~LslNLsFlSnDiL~~lLq 368 (484)
+..+++..|.|+|++++++=
T Consensus 118 ~~~~~~g~f~s~dl~~fyv~ 137 (482)
T MTH00217 118 IEILLMGVFTILDLVGFYIL 137 (482)
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 34456778999999987654
No 77
>PRK10726 hypothetical protein; Provisional
Probab=47.17 E-value=98 Score=28.15 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=37.9
Q ss_pred hhhcchhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 011502 241 FMRMGTTSFF--SVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 241 f~rlGtas~f--~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYg 304 (484)
|+=.|++.+| +--|=+||.+.-.+-+.-+.+.+-.-+=++ |.-..-++.|+++|+.+.+|+-|
T Consensus 40 fl~YG~nTlfF~LYTWPFFLALmPvsVlvGi~l~~Ll~g~l~-~s~l~t~l~V~~lFwllF~~L~G 104 (105)
T PRK10726 40 FLIYGSNTLFFFLYTWPFFLALMPVSVLVGIALHSLLRGKLL-YSILFTLLTVGCLFWLLFSWLLG 104 (105)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445666555 445999988765443333333333333222 33344478899999999999865
No 78
>COG0651 HyfB Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=46.66 E-value=3.9e+02 Score=29.10 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHhhhhhhhHHHHHHh
Q 011502 347 LGLLLALNLSFVSSDALIFFL 367 (484)
Q Consensus 347 LGl~LslNLsFlSnDiL~~lL 367 (484)
+-++.++|.+|+++|++|.+.
T Consensus 113 ~l~~~g~~g~~~t~dlfnl~V 133 (504)
T COG0651 113 LLLLAGMLGAFLTGDLFNLYV 133 (504)
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 456679999999999999764
No 79
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=46.51 E-value=3.3e+02 Score=27.61 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhhh
Q 011502 331 ITTMYSIYCAWTYVGWLGLLLALNLS 356 (484)
Q Consensus 331 i~t~Ys~YCv~v~VGWLGl~LslNLs 356 (484)
++++-|++---.=.|=+|++||.=+.
T Consensus 293 ~~vllsil~gg~l~G~~G~ilavPl~ 318 (344)
T PRK12287 293 LVVFLSLIFWGWLLGPVGMLLSVPLT 318 (344)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34445555555556778888887765
No 80
>PLN02878 homogentisate phytyltransferase
Probab=46.05 E-value=1.4e+02 Score=30.87 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhh
Q 011502 280 AFFIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 280 v~flG~tpgllIValfgIvILWmYg 304 (484)
..++|..| +++.-+.+.++.|+|.
T Consensus 85 a~~~g~~~-l~~al~~~~~lg~~YS 108 (280)
T PLN02878 85 GWIVGSWP-LFWALFVSFVLGTAYS 108 (280)
T ss_pred HHHHChHH-HHHHHHHHHHHHHHHH
Confidence 33445433 4444456668889998
No 81
>PF07264 EI24: Etoposide-induced protein 2.4 (EI24); PDB: 3TX3_B.
Probab=45.45 E-value=1.4e+02 Score=27.32 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=12.6
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHHHH
Q 011502 246 TTSFFS-VIWCSILSVIAMVGMFKFL 270 (484)
Q Consensus 246 tas~f~-ImWc~flS~tSm~c~~y~L 270 (484)
+-.+.. ++.|.+++++-+.++.+++
T Consensus 15 ~~~l~~~~l~p~~l~~~l~~~~~~~~ 40 (219)
T PF07264_consen 15 SPKLRRLSLIPLLLNLLLFLALFIFL 40 (219)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 4445555555555555543
No 82
>COG4709 Predicted membrane protein [Function unknown]
Probab=45.21 E-value=3.3e+02 Score=27.20 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=15.6
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHH
Q 011502 238 IDSFMRMGTTSFFSVIWCSILSVI 261 (484)
Q Consensus 238 fdSf~rlGtas~f~ImWc~flS~t 261 (484)
+..+++||.-+++.++|-.+.-+.
T Consensus 82 ii~~~~L~~~~v~i~Lpl~~~vi~ 105 (195)
T COG4709 82 IIALIGLGLLAVIIGLPLLIGVIL 105 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777776654433
No 83
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=44.90 E-value=4.7e+02 Score=28.96 Aligned_cols=47 Identities=17% Similarity=0.335 Sum_probs=24.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHHHHHHhh
Q 011502 319 AFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLK 368 (484)
Q Consensus 319 ~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDiL~~lLq 368 (484)
++.|.|+=++.-+.+|=.+- .--++|+|.++++ +=|+==-++|..|.
T Consensus 561 AlgLa~~~ia~~~n~la~~~--~~~~~~~~~i~~i-li~v~Gh~~ni~L~ 607 (646)
T PRK05771 561 ALGLAGAGIAMAFNLMAGLL--PPSIGVIGIIVGI-IIFIFGHLLNIALS 607 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHh--cccccHHHHHHHH-HHHHHHHHHHHHHH
Confidence 56778887776666654443 1224566665554 22232234444443
No 84
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=44.84 E-value=2.1e+02 Score=31.51 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH-----HHHhhhhhhHHHHHHhhcccccc
Q 011502 273 LVVAALVAFFIGFALALVVVALSGTIL-----LWLYGSFWTTFFVIFLGGLAFKF 322 (484)
Q Consensus 273 lg~Aa~vv~flG~tpgllIValfgIvI-----LWmYgsFW~T~~liI~GG~~FsL 322 (484)
.|+....++-+|..+-++++|+|+--+ -||-.--.+.|+++++-|+.+..
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll~ 380 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLLE 380 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556667778877889999988655 36665556667777777765543
No 85
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=44.41 E-value=2.2e+02 Score=26.02 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=8.0
Q ss_pred HhhhHHHHHHHHHHHHHH
Q 011502 283 IGFALALVVVALSGTILL 300 (484)
Q Consensus 283 lG~tpgllIValfgIvIL 300 (484)
+....+-|++++++.++.
T Consensus 154 ~~~~~aa~~~~~~a~~~~ 171 (193)
T PF06738_consen 154 IQEFIAAFLASLLAALLA 171 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 86
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.18 E-value=69 Score=32.76 Aligned_cols=64 Identities=25% Similarity=0.464 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccchhHHH--HHHHHHHHH
Q 011502 268 KFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLAL--FITTMYSIY 338 (484)
Q Consensus 268 y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL~HeR~vl--li~t~Ys~Y 338 (484)
|-||=|++-+.|..++| .-|.+=+-+.++.++|- =|.-+-++ ++ +.+++|.|+.+ ++..+|.++
T Consensus 178 YcLLPlvvlS~v~i~~~-~~g~vg~il~~~~v~W~---t~aaS~lf-v~--al~~~~~rlLiaYp~~l~Y~~F 243 (249)
T KOG3103|consen 178 YCLLPLVVLSFVNIFVG-LQGTVGYILSALFVLWC---TYAASKLF-VS--ALSMENQRLLVAYPCALLYGVF 243 (249)
T ss_pred HHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHH---HHHHHHHH-HH--HhhccccchhhhhHHHHHHhhh
Confidence 55666666666666666 44444444445556674 34444444 44 88999999754 455555443
No 87
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=44.11 E-value=58 Score=36.97 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhccccc
Q 011502 285 FALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (484)
Q Consensus 285 ~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~Fs 321 (484)
..+|.++|+++.++-.=.++..|.-.+++++||..|.
T Consensus 108 Iaf~tLliaiytmlg~~~~~~w~~~pllll~GalwY~ 144 (704)
T TIGR01666 108 IAFGSLLVALYTMLGYIEVNVWFIQPVMLLCGTLWYS 144 (704)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 3455666666665543344444556677777776543
No 88
>PRK10189 MATE family multidrug exporter; Provisional
Probab=44.06 E-value=4.1e+02 Score=27.99 Aligned_cols=26 Identities=12% Similarity=-0.093 Sum_probs=16.7
Q ss_pred hhHHHHHHhhcccccccchhHHHHHH
Q 011502 307 WTTFFVIFLGGLAFKFTHERLALFIT 332 (484)
Q Consensus 307 W~T~~liI~GG~~FsL~HeR~vlli~ 332 (484)
...++.++..|.+=...+.|....+.
T Consensus 389 ~~~~~~~~~~g~lrg~G~t~~~~~i~ 414 (478)
T PRK10189 389 PIWAASWVLPAGLKGARDARYAMWVS 414 (478)
T ss_pred HHHHHHHHHHhHhhcCCCchHHHHHH
Confidence 34444456677777778888876654
No 89
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=44.05 E-value=52 Score=33.14 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 011502 207 QVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVG-MFKFLMVLVVAALVAFFIGF 285 (484)
Q Consensus 207 r~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c-~~y~Ll~lg~Aa~vv~flG~ 285 (484)
---|++..|++.+|-++.-++.. .++|+--| --.+|.| ++++ ..=.++.-++.-+|.
T Consensus 24 ~gDg~~fQw~~~~~i~~~g~~v~----~~~~~p~f-----------------~p~amlgG~lW~-~gN~~~vpii~~iGL 81 (254)
T PF07857_consen 24 TGDGFFFQWVMCSGIFLVGLVVN----LILGFPPF-----------------YPWAMLGGALWA-TGNILVVPIIKTIGL 81 (254)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH----HhcCCCcc-----------------eeHHHhhhhhhh-cCceeehhHhhhhhh
Confidence 33588999999988766433211 12333211 2233333 2221 122234567788999
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q 011502 286 ALALVVVALSGTILLWLYGSF 306 (484)
Q Consensus 286 tpgllIValfgIvILWmYgsF 306 (484)
.+|.+|-+-+-+++=|..|-|
T Consensus 82 glg~liW~s~n~l~Gw~~grf 102 (254)
T PF07857_consen 82 GLGMLIWGSVNCLTGWASGRF 102 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998876665
No 90
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=43.92 E-value=3.3e+02 Score=26.81 Aligned_cols=41 Identities=12% Similarity=0.232 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 011502 274 VVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIF 314 (484)
Q Consensus 274 g~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~liI 314 (484)
.+--.+...+.-.|.++++.++..+++-.+.-+|+.+.+-+
T Consensus 29 ~vlk~A~~~l~~~p~l~~~p~~~~~~~~~~~~~w~~~~~~l 69 (334)
T PF04515_consen 29 AVLKVASKALRSNPSLLLVPIITFIVQLVFFVLWIIVVLYL 69 (334)
T ss_pred HHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567778899999999999999999999998776644
No 91
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=43.91 E-value=3.8e+02 Score=27.52 Aligned_cols=43 Identities=19% Similarity=0.160 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHhhhhhhHHHH
Q 011502 270 LMVLVVAALVAFFIGFAL-------ALVVVALSGTILLWLYGSFWTTFFV 312 (484)
Q Consensus 270 Ll~lg~Aa~vv~flG~tp-------gllIValfgIvILWmYgsFW~T~~l 312 (484)
-+.+|++++....+|++. +..++.++.++++|--+.+|+-++-
T Consensus 144 ~~vlg~~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~q 193 (294)
T PRK12873 144 QAILALCWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMA 193 (294)
T ss_pred hHHHHHHHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888543 2244455578888888888876644
No 92
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=43.60 E-value=1.5e+02 Score=30.03 Aligned_cols=17 Identities=24% Similarity=0.245 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhhHHHHH
Q 011502 335 YSIYCAWTYVGWLGLLL 351 (484)
Q Consensus 335 Ys~YCv~v~VGWLGl~L 351 (484)
|.-+....+--|.|+=-
T Consensus 455 ~T~~G~~~~~~~~gfr~ 471 (511)
T PF09972_consen 455 RTPEGAELYAQWKGFRR 471 (511)
T ss_pred cchhHHHHHHHHHHHHH
Confidence 77788888889998643
No 93
>PF13446 RPT: A repeated domain in UCH-protein
Probab=42.08 E-value=22 Score=27.65 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=23.0
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhh
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVC 468 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkAL 468 (484)
.+.|+.||++++ ++++.|-..|+.+..
T Consensus 5 ~~Ay~~Lgi~~~--~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDED--TDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCC--CCHHHHHHHHHHHHH
Confidence 467999999885 999999999987765
No 94
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=41.71 E-value=1.6e+02 Score=29.75 Aligned_cols=18 Identities=33% Similarity=0.676 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+-.++++++++++.|+|-
T Consensus 132 ~~~~~l~l~~~~~~~~Yt 149 (314)
T PRK07566 132 PWVFLAALLGLFLAWIYS 149 (314)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 344555666666666665
No 95
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.61 E-value=5.9e+02 Score=29.12 Aligned_cols=94 Identities=23% Similarity=0.313 Sum_probs=59.8
Q ss_pred cccccccch---hhhhhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhccch----------HHHHHhhhhhhH-h-
Q 011502 138 KTGLGWSLN---RVHLKNMMEKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPM----------LMTNIYNAHDYV-S- 202 (484)
Q Consensus 138 ~~~~~~~~~---~l~~~~~~e~~~~~~~~~~r~lR~s~~~l~kq~~~wl~~qkp~----------~~t~~~~~rd~v-~- 202 (484)
-+|+.+++| ++.+++..-+.+.-.|+++|.-=...+-++-|-...|..|++- .+.++..+-|-. +
T Consensus 267 vsgl~yspDC~v~l~l~ntkg~~~vl~n~aVr~tll~~~~~~~~~~~Ll~q~~~~sps~v~rlSf~~i~mqa~mD~~Lal 346 (636)
T KOG0828|consen 267 VSGLVYSPDCFVPLTLNNTKGNVEVLYNKAVRYTLLYIFIVLSQIFLLLRQMRINSPSHVQRLSFLTIAMQAGMDAYLAL 346 (636)
T ss_pred ccCcccCCCcCcceeeeccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhhhhhhhHHHHHHHHHHHHH
Confidence 355677777 7889999999999999999987666666677766666665443 444555554432 1
Q ss_pred ------hhhhhhh-HHHHHHHHHHHHH----HHHHHHHhh
Q 011502 203 ------RKVQQVY-PVALNHLGHFAKI----MLLLSMLWL 231 (484)
Q Consensus 203 ------~~ver~w-PiV~~~~~~~g~L----~lLll~~W~ 231 (484)
..||..| |.|..+.++|=-. |.-|+..|+
T Consensus 347 l~lta~~vve~lylpfvtaAF~~fV~~siFemRYLlsI~k 386 (636)
T KOG0828|consen 347 LFLTANAVVESLYLPFVTAAFFKFVVFSIFEMRYLLSIWK 386 (636)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344444 7777776665322 333445565
No 96
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=41.54 E-value=4.2e+02 Score=29.38 Aligned_cols=122 Identities=18% Similarity=0.400 Sum_probs=69.7
Q ss_pred HHHHHHHHhhhhhh---hhhhhhhhcchh------------------HHHHHHHHHHHHHHHHHHHHHHHHH--------
Q 011502 222 IMLLLSMLWLDCTI---RGIDSFMRMGTT------------------SFFSVIWCSILSVIAMVGMFKFLMV-------- 272 (484)
Q Consensus 222 L~lLll~~W~DC~i---RGfdSf~rlGta------------------s~f~ImWc~flS~tSm~c~~y~Ll~-------- 272 (484)
=+.+++.+|.-|.+ =|-.+.+.|||+ -.|.-||.+.++..--.++.+.+..
T Consensus 45 svg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~ 124 (479)
T KOG1287|consen 45 SVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPF 124 (479)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Confidence 46788899999965 566777777764 4678889888766444433333322
Q ss_pred -----------HHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHhhhhhhHHHHHHhhcccccccc----h---------hH
Q 011502 273 -----------LVVAALVAFFIGFALALVVVALSGT-ILLWLYGSFWTTFFVIFLGGLAFKFTH----E---------RL 327 (484)
Q Consensus 273 -----------lg~Aa~vv~flG~tpgllIValfgI-vILWmYgsFW~T~~liI~GG~~FsL~H----e---------R~ 327 (484)
-.+|++++.|+.+ ...+.|...+. -+.-.++-+=...+++|.|-+-....| + -.
T Consensus 125 fp~c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~ 203 (479)
T KOG1287|consen 125 FPLCDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDV 203 (479)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCch
Confidence 2345555555554 34555553322 234455556666666666655222211 1 12
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 011502 328 ALFITTMYSIYCAWTYVGW 346 (484)
Q Consensus 328 vlli~t~Ys~YCv~v~VGW 346 (484)
.-+.+.+|+.+ |.|-||
T Consensus 204 g~i~lafysgl--fa~~GW 220 (479)
T KOG1287|consen 204 GNIALAFYSGL--FAFSGW 220 (479)
T ss_pred HHHHHHHHHhh--hcccCc
Confidence 34555666553 677888
No 97
>PF11992 DUF3488: Domain of unknown function (DUF3488); InterPro: IPR021878 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is typically between 323 to 339 amino acids in length. This domain is found associated with PF01841 from PFAM. This domain has a conserved PLW sequence motif. This domain contains 6 transmembrane helices.
Probab=41.51 E-value=2.7e+02 Score=28.28 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=7.8
Q ss_pred hhhHHHHHHHhhhhh
Q 011502 344 VGWLGLLLALNLSFV 358 (484)
Q Consensus 344 VGWLGl~LslNLsFl 358 (484)
..|+.+.+.++++-+
T Consensus 126 ~l~~ll~~~~~~~~L 140 (325)
T PF11992_consen 126 ALYLLLFLVLLLAAL 140 (325)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555443
No 98
>PF13886 DUF4203: Domain of unknown function (DUF4203)
Probab=41.09 E-value=3.1e+02 Score=25.80 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=17.5
Q ss_pred hhhHHHHHHhhcccccccchhHHHHHHH
Q 011502 306 FWTTFFVIFLGGLAFKFTHERLALFITT 333 (484)
Q Consensus 306 FW~T~~liI~GG~~FsL~HeR~vlli~t 333 (484)
+|.+...+.+.+..+.++.+|.++.+.|
T Consensus 114 ~~~~~~~~~l~~~~l~l~~~k~~~I~~t 141 (210)
T PF13886_consen 114 FWVLFLCLALVFGLLTLKFQKPFLIVST 141 (210)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555544444555678888887766654
No 99
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=40.93 E-value=1.4e+02 Score=32.51 Aligned_cols=22 Identities=23% Similarity=0.563 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhhhhHHHHHHhh
Q 011502 295 SGTILLWLYGSFWTTFFVIFLG 316 (484)
Q Consensus 295 fgIvILWmYgsFW~T~~liI~G 316 (484)
.||++-|+-+++|+++=-+|+=
T Consensus 249 aallLYWv~snlwtl~Qq~i~~ 270 (429)
T PRK00247 249 TAIALYWVANNLWTLIQNIIMY 270 (429)
T ss_pred HHHHHHHHHhhHHHHHHHHHHH
Confidence 4799999999999988665544
No 100
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.89 E-value=25 Score=35.50 Aligned_cols=37 Identities=27% Similarity=0.510 Sum_probs=21.4
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhccccc
Q 011502 282 FIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (484)
Q Consensus 282 flG~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~Fs 321 (484)
.+||-+-=++|+. +|.|+.+.+-..-++++.=|++.+
T Consensus 159 IlGYCLfPl~v~a---li~~~~~~l~~lr~vv~~~~~~WS 195 (234)
T KOG2946|consen 159 ILGYCLFPLVVAA---LIICLFRDLFFLRLVVTSIGLAWS 195 (234)
T ss_pred hhhhcccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566555555554 566777666666666555555544
No 101
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=40.58 E-value=52 Score=33.51 Aligned_cols=21 Identities=19% Similarity=0.450 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011502 263 MVGMFKFLMVLVVAALVAFFI 283 (484)
Q Consensus 263 m~c~~y~Ll~lg~Aa~vv~fl 283 (484)
|..++.++++++++.+++.++
T Consensus 1 M~r~l~~~~~l~~~~~~~~~~ 21 (398)
T PRK10747 1 MLKVLLLFVLLIAGIVVGPMI 21 (398)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666665555555
No 102
>PRK06458 hydrogenase 4 subunit F; Validated
Probab=40.36 E-value=2e+02 Score=30.73 Aligned_cols=21 Identities=14% Similarity=0.303 Sum_probs=15.8
Q ss_pred HHHHHHHhhhhhhhHHHHHHh
Q 011502 347 LGLLLALNLSFVSSDALIFFL 367 (484)
Q Consensus 347 LGl~LslNLsFlSnDiL~~lL 367 (484)
+=..++++..+.|||.++.++
T Consensus 115 ll~~~~~~~~~~s~dl~~~~v 135 (490)
T PRK06458 115 QLFLFTMLLALTSNNLGLMWV 135 (490)
T ss_pred HHHHHHHHHHHHhcCHHHHHH
Confidence 334578899999999887544
No 103
>KOG4740 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.07 E-value=54 Score=36.79 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH
Q 011502 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA-LALVVVALSGTIL 299 (484)
Q Consensus 246 tas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~t-pgllIValfgIvI 299 (484)
+..+|+-+|+-+++++|| ++.++|....=-.++..-+||+ .-+++++++++++
T Consensus 344 ~~GlF~Gi~~li~s~Isi-~~~~il~~~~~~~~A~~v~~~~~l~~f~~a~la~l~ 397 (564)
T KOG4740|consen 344 SVGLFLGIALLIGSFISI-ALFNILCSEDNPRAADYVVGITDLLLFVVALLACLF 397 (564)
T ss_pred chHHHHHHHHHHHHHHHH-HHHHHHHcCCCchhhHhhhhHHHHHHHHHHHHHHHH
Confidence 456888889999999886 5888999888877888889999 9999999999875
No 104
>PRK08601 NADH dehydrogenase subunit 5; Validated
Probab=39.83 E-value=3.8e+02 Score=29.74 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 011502 247 TSFFSVIWCSILSVIAMVGMFK 268 (484)
Q Consensus 247 as~f~ImWc~flS~tSm~c~~y 268 (484)
.++++++|--.+.+-.+.|++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~ 28 (509)
T PRK08601 7 SQTLLTLFFIALIIALLSGLLF 28 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888764
No 105
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=39.62 E-value=3.3e+02 Score=26.43 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+..++++++++++.|+|-
T Consensus 104 ~~~~~~~~~~~~~~~~Ys 121 (279)
T PRK12884 104 PLAFLVVILVSVLGILYN 121 (279)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666788888889995
No 106
>PF00822 PMP22_Claudin: PMP-22/EMP/MP20/Claudin family; InterPro: IPR004031 Several vertebrate small integral membrane glycoproteins are evolutionary related [, , ], including eye lens specific membrane protein 20 (MP20 or MP19); epithelial membrane protein-1 (EMP-1), which is also known as tumor-associated membrane protein (TMP) or as squamous cell-specific protein Cl-20; epithelial membrane protein-2 (EMP-2), which is also known as XMP; epithelial membrane protein-3 (EMP-3), also known as YMP; and peripheral myelin protein 22 (PMP-22), which is expressed in many tissues but mainly by Schwann cells as a component of myelin of the peripheral nervous system (PNS). PMP-22 probably plays a role both in myelinization and in cell proliferation. Mutations affecting PMP-22 are associated with hereditary motor and sensory neuropathies such as Charcot-Marie-Tooth disease type 1A (CMT-1A) in human or the trembler phenotype in mice. The proteins of this family are about 160 to 173 amino acid residues in size, and contain four transmembrane segments. PMP-22, EMP-1, -2 and -3 are highly similar, while MP20 is more distantly related. This family also includes the claudins, which are components of tight junctions.; GO: 0016020 membrane
Probab=39.47 E-value=14 Score=32.27 Aligned_cols=16 Identities=31% Similarity=0.798 Sum_probs=12.2
Q ss_pred HHHHHhhhhHHHHHHH
Q 011502 338 YCAWTYVGWLGLLLAL 353 (484)
Q Consensus 338 YCv~v~VGWLGl~Lsl 353 (484)
|-...|+||.+.+|++
T Consensus 145 ~G~s~~lgW~~~~l~~ 160 (166)
T PF00822_consen 145 FGWSFYLGWVAFILLL 160 (166)
T ss_pred ehHHHHHHHHHHHHHH
Confidence 4556789999988865
No 107
>PRK02935 hypothetical protein; Provisional
Probab=38.94 E-value=86 Score=28.70 Aligned_cols=43 Identities=14% Similarity=0.420 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHhh-----hhhhHHHH
Q 011502 269 FLMVLVVAALVAFFIGFAL--ALVVVALSGTILLWLYG-----SFWTTFFV 312 (484)
Q Consensus 269 ~Ll~lg~Aa~vv~flG~tp--gllIValfgIvILWmYg-----sFW~T~~l 312 (484)
+-+++...|..+-|+|.-+ +-.+.++|=++=+=+.- |||| |++
T Consensus 15 ~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFwi-Gml 64 (110)
T PRK02935 15 FALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFWI-GML 64 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH-hhh
No 108
>PRK12287 tqsA pheromone autoinducer 2 transporter; Reviewed
Probab=38.92 E-value=2.4e+02 Score=28.61 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=29.4
Q ss_pred HHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhh-hhHHHHHH
Q 011502 309 TFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYV-GWLGLLLA 352 (484)
Q Consensus 309 T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~V-GWLGl~Ls 352 (484)
+-+-+++||.+|-.==.=++++++++--+.|...+- =|++.+|+
T Consensus 295 vllsil~gg~l~G~~G~ilavPl~~iik~~~~~~~~~~~~~~ll~ 339 (344)
T PRK12287 295 VFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLS 339 (344)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCccHHHHHhC
Confidence 355566677777776677888888888777776653 35555543
No 109
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=38.86 E-value=18 Score=29.19 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=17.8
Q ss_pred hhhhhHHHHHHhhcccccccc
Q 011502 304 GSFWTTFFVIFLGGLAFKFTH 324 (484)
Q Consensus 304 gsFW~T~~liI~GG~~FsL~H 324 (484)
+-+||..++++++||.+-||.
T Consensus 4 awywivli~lv~~gy~~hmkr 24 (54)
T PF13260_consen 4 AWYWIVLIVLVVVGYFCHMKR 24 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 448999999999999887764
No 110
>KOG3618 consensus Adenylyl cyclase [General function prediction only]
Probab=38.80 E-value=5.7e+02 Score=30.98 Aligned_cols=131 Identities=18% Similarity=0.242 Sum_probs=70.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011502 205 VQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIG 284 (484)
Q Consensus 205 ver~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG 284 (484)
.++.||-+.+-.-.....+++....|-=-. .+-+|+- |.+||..-||+.|.+|+..++..- +..-.-+--
T Consensus 70 ~~~~Fpq~r~RfR~~L~YI~~~~l~W~lYf------av~~rs~--fi~~~~~slc~lslv~~mf~~ft~--~~lY~rhy~ 139 (1318)
T KOG3618|consen 70 LERCFPQTRRRFRYALFYIGFACLLWSLYF------AVHMRSR--FIVMVAPSLCFLSLVCVMFFLFTF--TKLYARHYA 139 (1318)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHHHHh------eeccCce--eeeehHHHHHHHHHHHHHHHHHHH--HHHHHHHhh
Confidence 455666666554444444555555562111 1223443 888999999999999987666432 112111111
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhHHHHHHh-hcccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhh
Q 011502 285 FALALVVVALSGTILLWLYGSFWTTFFVIFL-GGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLS 356 (484)
Q Consensus 285 ~tpgllIValfgIvILWmYgsFW~T~~liI~-GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLs 356 (484)
-|-.++..=++|+-++ ++-+ |-.+|.---..|+.-+-.+..||-|-----||++.+++--|
T Consensus 140 ~TS~~~tlLvc~~tLa-----------~ltat~r~af~spvgsfa~c~evvlLiYTv~plPLyL~~~~gi~YS 201 (1318)
T KOG3618|consen 140 WTSLALTLLVCALTLA-----------NLTATARPAFLSPVGSFAMCIEVVLLIYTVMPLPLYLSLCLGIAYS 201 (1318)
T ss_pred HHHHHHHHHHHHHHHH-----------HhhhccchhhhCchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 2222222222222222 1112 22366555566777777777777777667788877776444
No 111
>PRK10160 taurine transporter subunit; Provisional
Probab=38.62 E-value=4e+02 Score=26.25 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=4.4
Q ss_pred hhhhhhHH
Q 011502 204 KVQQVYPV 211 (484)
Q Consensus 204 ~ver~wPi 211 (484)
+++|-||.
T Consensus 13 ~~~~~~~~ 20 (275)
T PRK10160 13 RLKWRWPL 20 (275)
T ss_pred chHhhccc
Confidence 45566653
No 112
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=38.17 E-value=4.8e+02 Score=30.81 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=9.8
Q ss_pred hhhHHHHHHHhhhhhh
Q 011502 344 VGWLGLLLALNLSFVS 359 (484)
Q Consensus 344 VGWLGl~LslNLsFlS 359 (484)
..|.+++|++=+-|+-
T Consensus 325 ~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 325 DVWRLIILSLVVIFLR 340 (810)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3577777776665543
No 113
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=38.09 E-value=2.8e+02 Score=32.65 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=6.3
Q ss_pred HHhhhhHHH
Q 011502 341 WTYVGWLGL 349 (484)
Q Consensus 341 ~v~VGWLGl 349 (484)
+..+||.|.
T Consensus 361 rlFigWFGp 369 (810)
T TIGR00844 361 AMFIGHFGP 369 (810)
T ss_pred HHHheeecc
Confidence 346799884
No 114
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=37.61 E-value=4.9e+02 Score=27.07 Aligned_cols=146 Identities=15% Similarity=0.157 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhh--h-hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q 011502 216 LGHFAKIMLLLSMLWLDCTIR--G-IDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFA------ 286 (484)
Q Consensus 216 ~~~~g~L~lLll~~W~DC~iR--G-fdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~t------ 286 (484)
++-++.+++..+..|+|-.+- + +..+...++.+.=.|+=...=|++++.++..-++..+..-+..+|=--.
T Consensus 11 l~~~~av~la~~~~~ld~~~~~~~~~~~~~~~~~~~ar~lLstia~smitv~~~~fSi~~val~~assq~sPR~l~~f~~ 90 (371)
T PF10011_consen 11 LYAVLAVVLAFLTPYLDRLLPDSGLLPFFFLIGPDGARTLLSTIAGSMITVTGFVFSITLVALQLASSQFSPRLLRNFMR 90 (371)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHh
Confidence 345567777777788775543 1 4445555555444443333344444444444444444444443331111
Q ss_pred --HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhHHH-HHHHhhhhhhhHHH
Q 011502 287 --LALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGL-LLALNLSFVSSDAL 363 (484)
Q Consensus 287 --pgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl-~LslNLsFlSnDiL 363 (484)
.--.+.|+|---++ |+ + ..++.+++-...- -.++++.++.++++.|+..-+-|..= .-+++.+-+-..+=
T Consensus 91 d~~~q~vLg~Figtfv--y~---l-~~l~~i~~~~~~~-~p~~~~~~a~~l~i~~v~~li~fI~~i~~~iqv~~ii~~i~ 163 (371)
T PF10011_consen 91 DRVTQVVLGTFIGTFV--YS---L-LVLIAIRSGDYGS-VPRLSVFIALALAILSVVLLIYFIHHIARSIQVSNIIARIE 163 (371)
T ss_pred CchHHHHHHHHHHHHH--HH---H-HHHHHcccccccc-CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 11112222211110 00 0 1112222222211 56889999999999999999999873 34566666655554
Q ss_pred HHHhh
Q 011502 364 IFFLK 368 (484)
Q Consensus 364 ~~lLq 368 (484)
....+
T Consensus 164 ~~~~~ 168 (371)
T PF10011_consen 164 EDARK 168 (371)
T ss_pred HHHHH
Confidence 44444
No 115
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=37.47 E-value=94 Score=28.68 Aligned_cols=27 Identities=22% Similarity=0.330 Sum_probs=21.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhhhhhH
Q 011502 283 IGFALALVVVALSGTILLWLYGSFWTT 309 (484)
Q Consensus 283 lG~tpgllIValfgIvILWmYgsFW~T 309 (484)
.|.+.+...=++.+.+++|+.++.++.
T Consensus 56 ~gN~~AtiaD~~La~~~iW~~~~~~~~ 82 (136)
T PF10710_consen 56 TGNIVATIADFGLAFLVIWLMGYILTG 82 (136)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777778888888988888775
No 116
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=37.41 E-value=3.4e+02 Score=28.17 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=71.3
Q ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHhccchHHHHHhhhhhhHhhhhhhhhHHHHHHHH-----------------
Q 011502 155 EKVKLSVNVVVRSLRVYVVPTLKAAIELLERQSPMLMTNIYNAHDYVSRKVQQVYPVALNHLG----------------- 217 (484)
Q Consensus 155 e~~~~~~~~~~r~lR~s~~~l~kq~~~wl~~qkp~~~t~~~~~rd~v~~~ver~wPiV~~~~~----------------- 217 (484)
.|-|.-..++....--+.++++.|+.+-=+=|.++.+.-+ +-.+.-.+.-.||+-+|-..
T Consensus 62 ~kheiprkv~hssigf~~l~l~g~g~kr~~i~~~Li~kfi---~ifigdlirlnWP~FsrLy~r~lg~lmre~erhl~nG 138 (269)
T KOG4453|consen 62 LKHEIPRKVAHSSIGFALLLLFGSGTKRNVIQQSLIRKFI---HIFIGDLIRLNWPIFSRLYIRGLGILMREVERHLLNG 138 (269)
T ss_pred hhhhhchhHhhhhHHHHHHHHHhcccchhhhhHHHHHHHH---HHHHhHHHHhccHHHHHHHHhcccccchHHHHHHhcc
Confidence 3556666777777778889999999877666666622211 23456677888998775322
Q ss_pred ---HHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------
Q 011502 218 ---HFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGF--------- 285 (484)
Q Consensus 218 ---~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~--------- 285 (484)
..-.|..-+..+|++.+| .++++.+|| =++|..|+-=.|-
T Consensus 139 vLfYvLgl~fs~~ff~kespi-----------~s~~Llswc-----------------Dt~AdtvGRKfG~~tpk~aknK 190 (269)
T KOG4453|consen 139 VLFYVLGLLFSAVFFWKESPI-----------GSISLLSWC-----------------DTIADTVGRKFGSTTPKYAKNK 190 (269)
T ss_pred hHHHHHHHHHHhhccccccHH-----------HHHHHHHHh-----------------hhHHHHHhhhccccCCCcCCCc
Confidence 122233333445666554 345555555 3566666665553
Q ss_pred ----hHHHHHHHHHHHHHHHHh
Q 011502 286 ----ALALVVVALSGTILLWLY 303 (484)
Q Consensus 286 ----tpgllIValfgIvILWmY 303 (484)
..|.|++|+|.-+..|-|
T Consensus 191 SlAGSIgaft~Gvf~c~vy~gy 212 (269)
T KOG4453|consen 191 SLAGSIGAFTFGVFICIVYLGY 212 (269)
T ss_pred cccchHHHHHHHHHHHHHHHHH
Confidence 257777777776666654
No 117
>COG4452 CreD Inner membrane protein involved in colicin E2 resistance [Defense mechanisms]
Probab=37.13 E-value=70 Score=34.86 Aligned_cols=71 Identities=25% Similarity=0.518 Sum_probs=47.3
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhh----hhHHHHHH-----hhcccccc-cchhHHHHH------HHHHHHHHHHHhhh
Q 011502 282 FIGFALALVVVALSGTILLWLYGSF----WTTFFVIF-----LGGLAFKF-THERLALFI------TTMYSIYCAWTYVG 345 (484)
Q Consensus 282 flG~tpgllIValfgIvILWmYgsF----W~T~~liI-----~GG~~FsL-~HeR~vlli------~t~Ys~YCv~v~VG 345 (484)
-+|+|+|-+|-.+.+.+.-=||=.+ |--|+++. +=|.||.+ +-|-.|||. +.+|++-.+--++-
T Consensus 348 HiGFt~Ayl~aSla~a~l~~~YL~avl~~~~~g~~f~~~L~~lygvm~glL~~edyALL~Gs~llf~~LaavM~lTRklD 427 (443)
T COG4452 348 HIGFTVAYLIASLAGALLNGIYLQAVLRGWRNGLLFFLALLLLYGVMFGLLNSEDYALLLGSLLLFVALAAVMFLTRKLD 427 (443)
T ss_pred hcCcCHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhHHHHHHhhHHHHHHHHHHHheeeecc
Confidence 3688888888887777777677554 43333333 33667764 777777654 55677777777888
Q ss_pred hHHHHHH
Q 011502 346 WLGLLLA 352 (484)
Q Consensus 346 WLGl~Ls 352 (484)
|-|+.+.
T Consensus 428 wy~~~~~ 434 (443)
T COG4452 428 WYQVGLP 434 (443)
T ss_pred hhhccch
Confidence 8887643
No 118
>COG0600 TauC ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]
Probab=36.34 E-value=4.6e+02 Score=26.39 Aligned_cols=88 Identities=17% Similarity=0.314 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 011502 215 HLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL----SVIAMVGMFKFLMVLVVAALVAFFIGFALALV 290 (484)
Q Consensus 215 ~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~fl----S~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgll 290 (484)
+...+..++.++..-|.-|....++.++==+|.+++..+|-.+- ---..+-+..+++..++|++++.-+|...|..
T Consensus 12 ~~~~~~~~~~~l~~Wq~~~~~~~~~~~~LP~P~~V~~~~~~~~~~g~L~~~~~~Sl~rv~~Gf~la~~~gi~lgil~g~~ 91 (258)
T COG0600 12 ALLPLLGLLALLALWQLAARLGLIPPFILPSPSAVLAALVELLASGELFQHLLASLLRVLLGFALAAVLGIPLGILMGLS 91 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCCCCHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555555555688888889999988887765 23356677889999999999999888887754
Q ss_pred ------------------HHHHHHHHHHHH
Q 011502 291 ------------------VVALSGTILLWL 302 (484)
Q Consensus 291 ------------------IValfgIvILWm 302 (484)
.+|+.=++|+|+
T Consensus 92 ~~~~~~l~P~i~~l~~iP~lA~~Pl~ilwf 121 (258)
T COG0600 92 RLLERLLDPLVQVLRPIPPLALAPLAILWF 121 (258)
T ss_pred HHHHHHHhHHHHHHhcCCHHHHHHHHHHHH
Confidence 467888899996
No 119
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=36.29 E-value=1.4e+02 Score=26.70 Aligned_cols=16 Identities=6% Similarity=0.079 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 011502 252 VIWCSILSVIAMVGMF 267 (484)
Q Consensus 252 ImWc~flS~tSm~c~~ 267 (484)
|-|+.+++.+|.++..
T Consensus 62 i~~ai~~~~~s~ll~~ 77 (130)
T PF11026_consen 62 IRRAITLATLSALLVC 77 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555544433
No 120
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=36.07 E-value=2.2e+02 Score=28.66 Aligned_cols=45 Identities=16% Similarity=0.245 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHH----hhhhHHHHHHHhhhhhhhHHHHHHhhhccccC
Q 011502 330 FITTMYSIYCAWT----YVGWLGLLLALNLSFVSSDALIFFLKSKVNQH 374 (484)
Q Consensus 330 li~t~Ys~YCv~v----~VGWLGl~LslNLsFlSnDiL~~lLq~nv~~~ 374 (484)
+.+++|-++=..- -..|.-+++++=.||++.=+-+.+|-+.+...
T Consensus 195 lga~~l~~~~~~~~~~~~~~~~~~~ig~~~afv~g~l~i~~ll~~~~~~ 243 (259)
T PF02673_consen 195 LGAGLLELKDLFSAGLDSGSWPPLLIGFVVAFVVGYLAIKWLLRFLKRR 243 (259)
T ss_pred HHHHHHHHHHHhccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3345555553332 36788888888888888877777776555444
No 121
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=35.89 E-value=2.5e+02 Score=27.63 Aligned_cols=30 Identities=3% Similarity=0.041 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011502 250 FSVIWCSILSVIAMVGMFKFLMVLVVAALV 279 (484)
Q Consensus 250 f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~v 279 (484)
.+.+|++++++++.+|-.+..++++.-.++
T Consensus 29 ~~~~~~F~~~ml~~~G~r~~~i~~~~Ll~~ 58 (284)
T PF12805_consen 29 VLALLTFFFGMLGVYGPRAATIGFATLLVA 58 (284)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344567777777777766666655444333
No 122
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=34.82 E-value=1.2e+02 Score=35.46 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=10.1
Q ss_pred hHHHHHHhhcccc
Q 011502 308 TTFFVIFLGGLAF 320 (484)
Q Consensus 308 ~T~~liI~GG~~F 320 (484)
+.+++||+||..|
T Consensus 527 vm~~LIi~GntGF 539 (800)
T TIGR00934 527 LMIWFIIIGNTGF 539 (800)
T ss_pred HHHHHHHHcccch
Confidence 4577888888877
No 123
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=34.74 E-value=72 Score=30.77 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=6.5
Q ss_pred HhhhHHHHHHHHHH
Q 011502 283 IGFALALVVVALSG 296 (484)
Q Consensus 283 lG~tpgllIValfg 296 (484)
++..+|-+.+++||
T Consensus 29 ~sl~~s~llI~lFg 42 (165)
T PF11286_consen 29 LSLAFSQLLIALFG 42 (165)
T ss_pred HHHHHHHHHHHHcC
Confidence 34444444445554
No 124
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=34.61 E-value=8.4e+02 Score=30.16 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=13.2
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhHH
Q 011502 324 HERLALFITTMYSIYCAWTYVGWLG 348 (484)
Q Consensus 324 HeR~vlli~t~Ys~YCv~v~VGWLG 348 (484)
|.=.+.++..+.++|..+..+||.+
T Consensus 200 ~~~~~~pi~i~~~~~lL~~~~G~~~ 224 (1490)
T TIGR01271 200 HFVWIAPLQVILLMGLIWELLEVNG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433445555555555555566654
No 125
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=34.57 E-value=39 Score=30.70 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=17.0
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q 011502 280 AFFIGFALALVVVALSGTIL 299 (484)
Q Consensus 280 v~flG~tpgllIValfgIvI 299 (484)
-+|.|+..|+-|+||+++++
T Consensus 79 na~yGfviGl~i~aLlAlil 98 (108)
T COG4062 79 NAFYGFVIGLGIMALLALIL 98 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999875
No 126
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=34.49 E-value=1.3e+02 Score=29.51 Aligned_cols=23 Identities=17% Similarity=0.050 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhh
Q 011502 220 AKIMLLLSMLWLDCTIRGIDSFM 242 (484)
Q Consensus 220 g~L~lLll~~W~DC~iRGfdSf~ 242 (484)
.-++...-..|-|..=|++|...
T Consensus 44 ~~l~~~a~~~~Nd~~D~~iD~~~ 66 (280)
T TIGR01473 44 TTLAAASANAFNMYIDRDIDKKM 66 (280)
T ss_pred HHHHHHHHHHHHhhcccCcCCCC
Confidence 33455555666666668998863
No 127
>PLN00136 silicon transporter; Provisional
Probab=34.48 E-value=2.1e+02 Score=30.91 Aligned_cols=78 Identities=18% Similarity=0.210 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHhhh----------hhhHHHHHHhhccc--ccccchhHHHHHHHHHH------HHHHHHhhhhHH
Q 011502 287 LALVVVALSGTILLWLYGS----------FWTTFFVIFLGGLA--FKFTHERLALFITTMYS------IYCAWTYVGWLG 348 (484)
Q Consensus 287 pgllIValfgIvILWmYgs----------FW~T~~liI~GG~~--FsL~HeR~vlli~t~Ys------~YCv~v~VGWLG 348 (484)
..+-++|+.|.++|-+.+. -|.| ++++.|+.. ..+.+.=+.-.+..... ..-.-.-++|+.
T Consensus 301 ~p~~~iAl~~a~~lll~~~~~~~~~l~~v~W~~-Llff~GlFilv~~l~~tGl~~~i~~~l~~~~~~~~~~~~~~~~~~s 379 (482)
T PLN00136 301 LNMSWTAITTAIALVVVDFRDAEPCLDTVSYSL-LVFFSGMFITVSGFNKTGLPGAIWNFMAPYSKVNSVGGISVLSVII 379 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCHHHHHHhCCCcH-HHHHHHHHHHHHHHHHhCHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4455677777777766653 2554 333444332 22333222222222111 112445567777
Q ss_pred HHHHHhhhhhhhHHHHHHhh
Q 011502 349 LLLALNLSFVSSDALIFFLK 368 (484)
Q Consensus 349 l~LslNLsFlSnDiL~~lLq 368 (484)
.++| +|+||--..-++-
T Consensus 380 ~~lS---~~isNvp~~~~m~ 396 (482)
T PLN00136 380 LLLS---NLASNVPTVLLMG 396 (482)
T ss_pred HHHH---HHhccHHHHHHHH
Confidence 7777 7888876554444
No 128
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=34.27 E-value=1.3e+02 Score=29.27 Aligned_cols=17 Identities=18% Similarity=0.215 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 011502 209 YPVALNHLGHFAKIMLL 225 (484)
Q Consensus 209 wPiV~~~~~~~g~L~lL 225 (484)
=....+|+.+++.++|+
T Consensus 178 ~n~~~tW~lR~~G~llm 194 (248)
T PF07787_consen 178 ANNTLTWILRFIGWLLM 194 (248)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34556777776666554
No 129
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=34.11 E-value=1.1e+02 Score=28.92 Aligned_cols=28 Identities=11% Similarity=0.235 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhhhhhh
Q 011502 332 TTMYSIYCAWTYVGWLGLLLALNLSFVS 359 (484)
Q Consensus 332 ~t~Ys~YCv~v~VGWLGl~LslNLsFlS 359 (484)
.++.+++..-.=-+|..+..++=.+.+.
T Consensus 65 ~~i~gl~~~~~G~~~~~~~~~iv~gliA 92 (186)
T PF09605_consen 65 GIIMGLIFFLMGHGWPMLIVCIVGGLIA 92 (186)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3344444333333355555555555444
No 130
>TIGR02210 rodA_shape rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example.
Probab=34.09 E-value=5.4e+02 Score=26.49 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhcchhH
Q 011502 220 AKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (484)
Q Consensus 220 g~L~lLll~~W~DC~iRGfdSf~rlGtas 248 (484)
..+++|++.....-.+.|-+.-+++|+.+
T Consensus 66 ~~~~ll~l~~~~g~~v~Ga~rWi~lg~~~ 94 (352)
T TIGR02210 66 LGLLLLVAVLLFGTTGKGAQRWIDLGFFR 94 (352)
T ss_pred HHHHHHHHHHHcCCCcCCceeeeecCCcc
Confidence 44555555555556677888888888765
No 131
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=33.57 E-value=5.2e+02 Score=26.19 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=38.4
Q ss_pred hhhHHHHHHhhcccccccchhHHHHHHHHHHHHH------HHHhhhhHHHHHHHhhhhhhhHHHHH-Hhhh
Q 011502 306 FWTTFFVIFLGGLAFKFTHERLALFITTMYSIYC------AWTYVGWLGLLLALNLSFVSSDALIF-FLKS 369 (484)
Q Consensus 306 FW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YC------v~v~VGWLGl~LslNLsFlSnDiL~~-lLq~ 369 (484)
++..++..+.++.....+|.|..+.+..+..+-. .-...|..|+.++.=++.+-+-++.. .+++
T Consensus 357 ~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~~i~i~l~~~l~~~~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 357 LIFYSLQKVLLRAFYARKDTRTPFINSVISVVLNALLSLLLIFPLGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred HHHHHHHHHHHHhhHhccCCccCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666777778899997766665544322 22245777777776666665555543 4443
No 132
>COG1863 MnhE Multisubunit Na+/H+ antiporter, MnhE subunit [Inorganic ion transport and metabolism]
Probab=33.35 E-value=2e+02 Score=27.29 Aligned_cols=40 Identities=25% Similarity=0.518 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHh-hhHHHHHHH-HHHHHHHHHhhhhhh
Q 011502 269 FLMVLVVAALVAFFIG-FALALVVVA-LSGTILLWLYGSFWT 308 (484)
Q Consensus 269 ~Ll~lg~Aa~vv~flG-~tpgllIVa-lfgIvILWmYgsFW~ 308 (484)
.++.+..+..=..+-| ++++-|++| ++|.+++|.-..|-+
T Consensus 5 ~~l~i~l~~~Wlll~~s~s~~~~i~G~ivg~iv~~~~~~~~~ 46 (158)
T COG1863 5 LLLNILLALFWLLLTGSFSPANLILGFIVGAIVLLLLRRFLP 46 (158)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444444344443 677777777 468888888777755
No 133
>PRK10794 cell wall shape-determining protein; Provisional
Probab=33.19 E-value=5.9e+02 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhH
Q 011502 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTS 248 (484)
Q Consensus 219 ~g~L~lLll~~W~DC~iRGfdSf~rlGtas 248 (484)
+..+++|++.....-...|=..-+++|+-+
T Consensus 80 ~~~~~lL~l~~~~g~~~~Ga~rWi~iG~~~ 109 (370)
T PRK10794 80 IICIILLVAVDAFGQISKGAQRWLDLGIVR 109 (370)
T ss_pred HHHHHHHHHHHhcCCCcCCcccceecCCcc
Confidence 455666666666777888888899999765
No 134
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=33.14 E-value=1.9e+02 Score=29.74 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHH
Q 011502 262 AMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCA 340 (484)
Q Consensus 262 Sm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv 340 (484)
.+++++.++..++.++....-.++..=++----=+.++.+ ++.||.-+.++.+++..+ ..+=|....++.+-+.-++
T Consensus 172 ~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~-~~~Wr~~~~~~~~~~~~~~ 248 (521)
T KOG0255|consen 172 WMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYI-TRDWRWLFWIISIPSGLFL 248 (521)
T ss_pred HHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Confidence 3555666665555554433322222111111222455666 788888666655554433 3377777666665554443
No 135
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=33.09 E-value=86 Score=32.30 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 011502 288 ALVVVALSGTILLWLYG 304 (484)
Q Consensus 288 gllIValfgIvILWmYg 304 (484)
|.+.||+.=-.+.|+++
T Consensus 155 g~~~vGl~~~~~~~~~~ 171 (331)
T PRK12392 155 SAPAVGFSYGFITFLSA 171 (331)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555554334445554
No 136
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=32.95 E-value=1.4e+02 Score=29.83 Aligned_cols=34 Identities=26% Similarity=0.684 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh----hhhh
Q 011502 271 MVLVVAALVAFFIGFALALVVVALSGTILLWLYG----SFWT 308 (484)
Q Consensus 271 l~lg~Aa~vv~flG~tpgllIValfgIvILWmYg----sFW~ 308 (484)
|+||++|+++++ +++.||=++--+|.|+.+ -||+
T Consensus 142 lS~~~lgll~~~----~~laivRlilf~i~w~~~~g~~~fWl 179 (224)
T PF03839_consen 142 LSVGALGLLGLF----FALAIVRLILFLITWFFTGGKHGFWL 179 (224)
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCCEEe
Confidence 455555544444 445555555556677653 3676
No 137
>PRK09546 zntB zinc transporter; Reviewed
Probab=32.73 E-value=30 Score=34.41 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHH------HHhhhhhhHHHHHH
Q 011502 287 LALVVVALSGTILL------WLYGSFWTTFFVIF 314 (484)
Q Consensus 287 pgllIValfgIvIL------WmYgsFW~T~~liI 314 (484)
|--||.|++|+=+= |=||++|+.++.++
T Consensus 276 PlT~IaGiyGMNf~~mPel~~~~gy~~~l~im~~ 309 (324)
T PRK09546 276 PTTFLTGLFGVNLGGIPGGGWPFGFSIFCLLLVV 309 (324)
T ss_pred HHHHHHhhhccccCCCCCcCCcchHHHHHHHHHH
Confidence 88899999997643 67888766554433
No 138
>PRK13595 ubiA prenyltransferase; Provisional
Probab=32.35 E-value=3.6e+02 Score=27.87 Aligned_cols=19 Identities=21% Similarity=0.116 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 011502 286 ALALVVVALSGTILLWLYG 304 (484)
Q Consensus 286 tpgllIValfgIvILWmYg 304 (484)
.|..+++++.++++.|.|.
T Consensus 117 ~~~~~~l~~v~~~l~~~YS 135 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYS 135 (292)
T ss_pred hHHHHHHHHHHHHHHHHHc
Confidence 3566677777778888885
No 139
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=32.26 E-value=4.5e+02 Score=24.96 Aligned_cols=60 Identities=12% Similarity=0.243 Sum_probs=42.0
Q ss_pred hhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHHHHHHhhhc
Q 011502 305 SFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLKSK 370 (484)
Q Consensus 305 sFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDiL~~lLq~n 370 (484)
+||.+-..|.+-=.+||+.- |.+.+++.-=...+-++|+.+++=+=..+++.+..+++++
T Consensus 95 ~~~~~v~~I~~~D~~fS~Ds------V~a~~~~~~~~~~li~~g~~i~i~~m~~~s~~~~~~~~~~ 154 (176)
T TIGR03717 95 TLWAAIKTIVIADAVMSLDN------VLAVAGAAHGHLGLLIFGLLLSIPIIVWGSTLILKLMDRF 154 (176)
T ss_pred cHHHHHHHHHHHHHHHHHHH------HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888777777777777754 2333444433556778888888888888888888887743
No 140
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=32.22 E-value=1.3e+02 Score=28.18 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=10.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q 011502 279 VAFFIGFALALVVVALSGTILLW 301 (484)
Q Consensus 279 vv~flG~tpgllIValfgIvILW 301 (484)
++.|+|+....++..++|++.+|
T Consensus 23 ~~~~~~~~~~~~l~~l~~~~~~~ 45 (199)
T PF10112_consen 23 LVSFFGFDHSFLLSLLIGAVAFA 45 (199)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 141
>COG4758 Predicted membrane protein [Function unknown]
Probab=32.14 E-value=1.7e+02 Score=29.81 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=19.0
Q ss_pred hhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhHHHHH
Q 011502 305 SFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLL 351 (484)
Q Consensus 305 sFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~L 351 (484)
+||... ++++|++.+.+.|.-.+ |-++-++.-.-|.++|+
T Consensus 28 ~~~~lv-~ll~lll~~~~t~r~~~------~~~~i~a~~lf~~i~~l 67 (235)
T COG4758 28 FFWPLV-FLLALLLFRIYTTRSRA------SVLKIIALFLFFAIVFL 67 (235)
T ss_pred HHHHHH-HHHHHHHHhheehhhhH------HHHHHHHHHHHHHHHHH
Confidence 445533 33444555555555444 33444444444555444
No 142
>PRK12768 CysZ-like protein; Reviewed
Probab=31.64 E-value=5.4e+02 Score=25.75 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=17.7
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 011502 239 DSFMRMGTTSFFSVIWCSILSVIAMVGMF 267 (484)
Q Consensus 239 dSf~rlGtas~f~ImWc~flS~tSm~c~~ 267 (484)
..+-.++...+-.|+|-+.---.+..+++
T Consensus 7 ~a~~ql~~~~~r~vl~~~~~lt~~l~~~~ 35 (240)
T PRK12768 7 KALARLLSPPMRSVFWKVLGLTLLLLVVL 35 (240)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888887654433333333
No 143
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=31.32 E-value=5.5e+02 Score=25.70 Aligned_cols=81 Identities=15% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHH
Q 011502 224 LLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILS--------VIAMVGMFKFLMVLVVA-----ALVAFFIGFALALV 290 (484)
Q Consensus 224 lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS--------~tSm~c~~y~Ll~lg~A-----a~vv~flG~tpgll 290 (484)
++.+..+.=+--||+.+++.+.=+.+..+.+-.-+. ++...|++-..+.+... =..+.++|-..|++
T Consensus 9 if~~lll~igg~~G~~sllsL~~n~~~i~~~~i~~~~~G~~~~~v~~i~~~~~~~vtl~lv~G~n~kt~~A~~~tl~~~~ 88 (244)
T PF07907_consen 9 IFILLLLLIGGKKGLRSLLSLIFNFLIIFFVLIPLILNGYNPILVTIIAAILITAVTLFLVNGFNKKTLAAFIGTLIGVL 88 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 344444555667999999988877655544431111 12222222222222111 13456677777888
Q ss_pred HHHHHHHHHHHHhh
Q 011502 291 VVALSGTILLWLYG 304 (484)
Q Consensus 291 IValfgIvILWmYg 304 (484)
+.++++.++.|+..
T Consensus 89 ~~~~l~~~~~~~~~ 102 (244)
T PF07907_consen 89 LAGILALLVMKLAH 102 (244)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888777777654
No 144
>PRK11715 inner membrane protein; Provisional
Probab=31.20 E-value=2.2e+02 Score=31.05 Aligned_cols=26 Identities=38% Similarity=0.539 Sum_probs=18.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhhhh
Q 011502 281 FFIGFALALVVVALSGTILLWLYGSF 306 (484)
Q Consensus 281 ~flG~tpgllIValfgIvILWmYgsF 306 (484)
-.+||+.|-+|-++..++.+-+|..+
T Consensus 353 EHigF~~AYliAa~a~v~li~~Y~~~ 378 (436)
T PRK11715 353 EHIGFTLAYLIAALACVLLIGFYLSA 378 (436)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777654
No 145
>PF07290 DUF1449: Protein of unknown function (DUF1449); InterPro: IPR010840 This family consists of several bacterial proteins of around 210 residues in length. The function of this family is unknown.
Probab=31.12 E-value=1.9e+02 Score=28.42 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=14.7
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q 011502 237 GIDSFMRMGTTSFFSVIWCSILSVIAMVG 265 (484)
Q Consensus 237 GfdSf~rlGtas~f~ImWc~flS~tSm~c 265 (484)
++.+++-+|-.=++ |+++++++.++++|
T Consensus 53 ~~L~wL~vGkvPlL-I~L~l~l~~F~l~G 80 (202)
T PF07290_consen 53 QILSWLNVGKVPLL-IWLVLLLSSFGLIG 80 (202)
T ss_pred hHHHHhccCccHHH-HHHHHHHHHHHHHH
Confidence 34445555655443 34455666666655
No 146
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=30.99 E-value=4.7e+02 Score=24.82 Aligned_cols=11 Identities=36% Similarity=0.193 Sum_probs=6.2
Q ss_pred HHHHHHhccch
Q 011502 179 AIELLERQSPM 189 (484)
Q Consensus 179 ~~~wl~~qkp~ 189 (484)
--+.+|-||.=
T Consensus 35 l~~LleaQk~G 45 (206)
T PF06570_consen 35 LPHLLEAQKKG 45 (206)
T ss_pred HHHHHHHHhCC
Confidence 34556666654
No 147
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=30.77 E-value=3.3e+02 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.274 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHh
Q 011502 209 YPVALNHLGHFAKIMLLLSMLW 230 (484)
Q Consensus 209 wPiV~~~~~~~g~L~lLll~~W 230 (484)
.|.-.......|..+++...+|
T Consensus 8 ~~~er~k~~~~G~~vl~ta~la 29 (301)
T PF14362_consen 8 SPAERNKYAGIGAAVLFTALLA 29 (301)
T ss_pred ChHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444333
No 148
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=30.76 E-value=1.2e+02 Score=25.61 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=9.3
Q ss_pred HhhhHHHHHHHHHHHHHHHHhh
Q 011502 283 IGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 283 lG~tpgllIValfgIvILWmYg 304 (484)
+|+..|++++ ++++++-|.|.
T Consensus 54 ~g~~~g~~~~-~~~~~l~~~Yv 74 (91)
T PF04341_consen 54 LGIVLGLGQI-VFAWVLTWLYV 74 (91)
T ss_pred HHHHHHHHHH-HHHHHHHHHHH
Confidence 3444444444 34444455553
No 149
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=30.57 E-value=5.8e+02 Score=25.73 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhhhhhhhHHHHHHhh
Q 011502 330 FITTMYSIYCAWTYVGWLGLLLALNLSFVSSDALIFFLK 368 (484)
Q Consensus 330 li~t~Ys~YCv~v~VGWLGl~LslNLsFlSnDiL~~lLq 368 (484)
+++++-|+..--.=-|..|++++.=+.=+--+++....+
T Consensus 304 p~~ilisll~g~~l~G~~G~ila~pl~~~~k~~~~~~~~ 342 (355)
T COG0628 304 PLVILLSLLGGGSLFGFVGLILAPPLAAVLKVLLRAWLE 342 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666778999999999988877777777666
No 150
>PRK12665 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=30.48 E-value=89 Score=33.72 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=18.9
Q ss_pred hhhhHHHHHHHhhhhhhhHHHHHHh
Q 011502 343 YVGWLGLLLALNLSFVSSDALIFFL 367 (484)
Q Consensus 343 ~VGWLGl~LslNLsFlSnDiL~~lL 367 (484)
+.-++-++.+++..|+|+|.++.++
T Consensus 114 ~~l~lll~~g~~~~~~s~dl~~~~v 138 (521)
T PRK12665 114 LPTYLILVAGVSNAFLAGDLFNLYV 138 (521)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4457777888888999999877544
No 151
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=30.39 E-value=1.7e+02 Score=28.72 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=4.0
Q ss_pred HHHHHHhh
Q 011502 361 DALIFFLK 368 (484)
Q Consensus 361 DiL~~lLq 368 (484)
=.|..++.
T Consensus 296 Pall~~~~ 303 (333)
T PF03176_consen 296 PALLSLLG 303 (333)
T ss_pred HHHHHHcC
Confidence 44555554
No 152
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=30.34 E-value=5.9e+02 Score=25.96 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHhhhhhhHHHH
Q 011502 271 MVLVVAALVAFFIGFA-----LALVVVALSGTILLWLYGSFWTTFFV 312 (484)
Q Consensus 271 l~lg~Aa~vv~flG~t-----pgllIValfgIvILWmYgsFW~T~~l 312 (484)
+..|+++++...+|++ +..-.+.+|+++++|--+.||.-+..
T Consensus 147 ~vgg~~ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~ 193 (306)
T PRK13362 147 LVGSLSGAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIF 193 (306)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555655666654 33445567888889998888876653
No 153
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=30.02 E-value=5.5e+02 Score=25.35 Aligned_cols=33 Identities=30% Similarity=0.518 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHhhhhhhhHHHHHHhhhccccCCC
Q 011502 343 YVGWLGLLLALNLSFVSSDALIFFLKSKVNQHKT 376 (484)
Q Consensus 343 ~VGWLGl~LslNLsFlSnDiL~~lLq~nv~~~~~ 376 (484)
+-||.-+++.+ +.=.++|+.-||-+...+-++-
T Consensus 130 ~~g~~~~l~l~-~~vw~~Di~Ayf~Gr~fGk~kl 162 (265)
T COG0575 130 YSGLILLLLLF-LGVWAGDIGAYFVGRRFGKHKL 162 (265)
T ss_pred hhhHHHHHHHH-HHHHHHhhhHHHHHHHcCCCCC
Confidence 34444333332 3446899999999988887753
No 154
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=29.95 E-value=5.5e+02 Score=28.45 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=44.6
Q ss_pred hhhhhhhhhc---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHH
Q 011502 235 IRGIDSFMRM---------GTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFI--------GFALALVVVALSGT 297 (484)
Q Consensus 235 iRGfdSf~rl---------Gtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~fl--------G~tpgllIValfgI 297 (484)
+|.|+++..| =|+-++.+.++.|+.+.= -=+=|=|+.+..+....... ....=+++.|+++|
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f~lfFGmM~-gD~GyGLil~l~~~~l~~~~~k~~~~~~~~~~il~~~gi~si 404 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIFFPLFFGMML-GDAGYGLLLLLIGLLLSFKLKKKSEGLKRLLKILIYLGISTI 404 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHH
Confidence 5777777764 578899999988887641 11223333333222222211 22333578899999
Q ss_pred HHHHHhhhhhh
Q 011502 298 ILLWLYGSFWT 308 (484)
Q Consensus 298 vILWmYgsFW~ 308 (484)
+.=++||+|-=
T Consensus 405 i~G~lyG~fFG 415 (646)
T PRK05771 405 IWGLLTGSFFG 415 (646)
T ss_pred HHHHHHHhHhc
Confidence 99999999853
No 155
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=29.66 E-value=4.1e+02 Score=26.79 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=41.4
Q ss_pred hhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---HHH--HHHHHhhhHHHHHHHHHHHHH
Q 011502 233 CTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVL-VV---AAL--VAFFIGFALALVVVALSGTIL 299 (484)
Q Consensus 233 C~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~l-g~---Aa~--vv~flG~tpgllIValfgIvI 299 (484)
|.+.|++. |+=|-.+-...|.+++-++-=+.++|+.+-+ ++ +-. .++|.||..-..|+.++.-++
T Consensus 102 g~~~G~~g--~F~Pe~Lg~~~s~al~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~l 172 (240)
T PF03878_consen 102 GLILGLQG--RFSPELLGIQASSALVWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASLL 172 (240)
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHHH
Confidence 45667766 6777777777777776666655555554433 22 111 577999988777777765544
No 156
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=29.47 E-value=4.5e+02 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHhhh
Q 011502 290 VVVALSGTILLWLYGS 305 (484)
Q Consensus 290 lIValfgIvILWmYgs 305 (484)
+++++.++++.|+|-.
T Consensus 109 ~~l~~~~~~~~~~Ys~ 124 (283)
T TIGR01476 109 VLFTVVGIVLAVIYSM 124 (283)
T ss_pred HHHHHHHHHHhheecC
Confidence 6678888888999864
No 157
>PRK11281 hypothetical protein; Provisional
Probab=29.31 E-value=8.4e+02 Score=29.78 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHH
Q 011502 288 ALVVVALSGTILLWLYGSFWTTFFV 312 (484)
Q Consensus 288 gllIValfgIvILWmYgsFW~T~~l 312 (484)
.+|+++-+++++|.+-|||.|+.-+
T Consensus 690 ~~l~~~P~~l~~l~~~GY~yTa~~l 714 (1113)
T PRK11281 690 TVLTIAPIALIVLVVLGYYYTALRL 714 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667778888888886544
No 158
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=29.04 E-value=2.2e+02 Score=26.84 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 011502 287 LALVVVALSGTILLWL 302 (484)
Q Consensus 287 pgllIValfgIvILWm 302 (484)
+|++++++++++.+|.
T Consensus 184 ~~~~~~~~~~~~~~~~ 199 (245)
T PF02366_consen 184 PGLLLVLPAGLLFLWL 199 (245)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555555555555553
No 159
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=29.03 E-value=1.6e+02 Score=31.10 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 011502 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 249 ~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYg 304 (484)
+-.|.|.|++. ++++|+|..+-++|. ..|....+.+++++-+++-||-+
T Consensus 307 ~~~~~w~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~ 355 (376)
T PLN02380 307 IVVISWACLLI----LGAIKFLQWLSLLSS---WKGIASLAAGLVIVTILMQILIE 355 (376)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567877664 577788877766665 45555556666666666666543
No 160
>PRK06758 hypothetical protein; Provisional
Probab=28.68 E-value=70 Score=29.16 Aligned_cols=19 Identities=16% Similarity=0.433 Sum_probs=12.3
Q ss_pred hhhhhhHHHHHHhhhccccC
Q 011502 355 LSFVSSDALIFFLKSKVNQH 374 (484)
Q Consensus 355 LsFlSnDiL~~lLq~nv~~~ 374 (484)
.+|---|++| ||||++.++
T Consensus 102 iafcladvfn-llqd~ee~~ 120 (128)
T PRK06758 102 IAFCLADVFN-LLQDNEEEN 120 (128)
T ss_pred HHHHHHHHHH-HhcCchhhc
Confidence 3455568887 678776555
No 161
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=28.60 E-value=5.4e+02 Score=25.19 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+..++++++++++.|.|-
T Consensus 104 ~~~~~~~~~~~~~~~~Y~ 121 (277)
T PRK12883 104 IEAFLFALGAYVLMFLYA 121 (277)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344566777788888885
No 162
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=28.57 E-value=5.5e+02 Score=30.06 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=35.3
Q ss_pred hhhhhh-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhh
Q 011502 235 IRGIDS-FMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSF 306 (484)
Q Consensus 235 iRGfdS-f~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsF 306 (484)
..|+++ ..++=|..|+.+.|+..+..+..-.........+ ......+..+++++.++.+++.|.+-.+
T Consensus 809 ~~~~~~~~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~~~~~~l~l~~~~~~~~~ 877 (917)
T COG0474 809 TLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSL----LFSNKYLWLALLVIIILQLLIIFLPPLN 877 (917)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhcc----cccCHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 456555 5556666777777776666655554444444444 1222334444444555555554444333
No 163
>PF07856 Orai-1: Mediator of CRAC channel activity; InterPro: IPR012446 This entry includes Drosophila Orai and human Orai1, Orai2 and Orai3. ORAI-1 GFP reporters are co-expressed with STIM-1 (ER CA(2+) sensors) in the gonad and intestine. The protein has four predicted transmembrane domains with a highly conserved region between TM2 ad TM3. This conserved domain is thought to function in channel regulation. ORAI1-related proteins are required for the production of the calcium channel, CRAC, along with STIM1-related proteins [].
Probab=28.44 E-value=1.5e+02 Score=28.39 Aligned_cols=51 Identities=24% Similarity=0.478 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH-HHHH--hhhhhh
Q 011502 254 WCSILSVIAMVGMFKFLMVLVVAALVAFFIG--FALALVVVALSGTI-LLWL--YGSFWT 308 (484)
Q Consensus 254 Wc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG--~tpgllIValfgIv-ILWm--YgsFW~ 308 (484)
|..-..+ |+.-||+.++.++-|-++-- ...+..+.++.+++ |+|+ -.+||=
T Consensus 110 W~~s~~l----Gi~lFL~~l~l~~WIKF~~~~~~~aa~~~t~i~~~~~li~~~~~~~~wr 165 (175)
T PF07856_consen 110 WRFSTVL----GIPLFLAELALLGWIKFWDSPSPAAAIAITAILVPVLLIFVVFIQHFWR 165 (175)
T ss_pred HHHHHHH----HHHHHHHHHHHHHheeehhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766665 99999999999998887776 56666666666543 3344 245553
No 164
>COG1289 Predicted membrane protein [Function unknown]
Probab=28.29 E-value=2.4e+02 Score=31.28 Aligned_cols=56 Identities=21% Similarity=0.346 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhH-HHHHHhhcccc----cccchhHHHHHHHHHHHHHHH
Q 011502 286 ALALVVVALSGTILLWLYGSFWTT-FFVIFLGGLAF----KFTHERLALFITTMYSIYCAW 341 (484)
Q Consensus 286 tpgllIValfgIvILWmYgsFW~T-~~liI~GG~~F----sL~HeR~vlli~t~Ys~YCv~ 341 (484)
..|.++-.++|.+++|+..+-+.. -++++++..+| .+...+++.+.+++-..+|.-
T Consensus 407 i~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~~ 467 (674)
T COG1289 407 ILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLVG 467 (674)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 344455555556666665555554 22222222222 234555555555555555544
No 165
>COG1289 Predicted membrane protein [Function unknown]
Probab=28.24 E-value=1.2e+02 Score=33.46 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 011502 271 MVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWT 308 (484)
Q Consensus 271 l~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~ 308 (484)
+...++.+++..+.-.|-+|+ .++.+|+--..|+
T Consensus 67 ig~~~~~~~~~~~~~~p~~f~----~~~~~~~~l~~~~ 100 (674)
T COG1289 67 IGFAVALLLVALLAQEPWLFL----LLLTLWLGLCTAI 100 (674)
T ss_pred HHHHHHHHHHHHHccCcHHHH----HHHHHHHHHHHHH
Confidence 333333333433334444444 3344554444443
No 166
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=28.00 E-value=3.2e+02 Score=27.51 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 011502 269 FLMVLVVAALVAFFIGFALALVV 291 (484)
Q Consensus 269 ~Ll~lg~Aa~vv~flG~tpgllI 291 (484)
=|-.++..|++...+|+..++++
T Consensus 230 Plr~~~~~g~~~~~~~~~~~~~~ 252 (325)
T PRK10714 230 PLRLLSLLGSIIAIGGFSLAVLL 252 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555664444433
No 167
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=27.89 E-value=3.7e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+-.+.++++++++.+.|-
T Consensus 115 ~~~~~l~~~~~~~~~~Y~ 132 (290)
T PRK12870 115 PLSFWLCVAAVPVIFLYP 132 (290)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 444567777888888884
No 168
>PF12084 DUF3561: Protein of unknown function (DUF3561); InterPro: IPR022721 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=27.79 E-value=1.2e+02 Score=27.73 Aligned_cols=58 Identities=22% Similarity=0.426 Sum_probs=34.3
Q ss_pred hhhcchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHhh
Q 011502 241 FMRMGTTSFFS--VIWCSILSVIAMVGMFKFLMVLVVAALVA-----FFIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 241 f~rlGtas~f~--ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv-----~flG~tpgllIValfgIvILWmYg 304 (484)
|+=.|++.+|. -.|=+||.+.=.+ +..|+|--+. .|.-..-++.|+++|+.+.+|+-|
T Consensus 43 fl~YG~nTLfFfLYTWPFFLALmPvs------Vl~Gi~l~~ll~g~l~~s~~~t~l~V~~lFwllF~~L~G 107 (107)
T PF12084_consen 43 FLVYGSNTLFFFLYTWPFFLALMPVS------VLIGIALSSLLRGKLLWSLLATGLAVGCLFWLLFSWLSG 107 (107)
T ss_pred HhhhccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHcCCcEeeehhhHHHHHHHHHHHHHHHHcC
Confidence 35567766554 4699998765332 2223222221 122334567888999999999754
No 169
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=27.79 E-value=7.6e+02 Score=26.22 Aligned_cols=10 Identities=70% Similarity=1.162 Sum_probs=5.7
Q ss_pred hhhHHHHHHH
Q 011502 344 VGWLGLLLAL 353 (484)
Q Consensus 344 VGWLGl~Lsl 353 (484)
..|+|+++++
T Consensus 206 ~~~~g~~l~~ 215 (535)
T COG1807 206 RLWLGLLLGL 215 (535)
T ss_pred HHHHHHHHHH
Confidence 3566666554
No 170
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=27.54 E-value=2.1e+02 Score=24.25 Aligned_cols=18 Identities=28% Similarity=0.948 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 011502 291 VVALSGTILLWLYGSFWT 308 (484)
Q Consensus 291 IValfgIvILWmYgsFW~ 308 (484)
++.+++.+|=|+.|.+|.
T Consensus 14 ~~~l~~~lvG~~~g~~~~ 31 (90)
T PF11808_consen 14 LLLLAAALVGWLFGHLWW 31 (90)
T ss_pred HHHHHHHHHHHHHhHHHH
Confidence 333444444455566654
No 171
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=27.53 E-value=17 Score=34.03 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHH------HHhhhhhh--HHHHHHhhc
Q 011502 286 ALALVVVALSGTILL------WLYGSFWT--TFFVIFLGG 317 (484)
Q Consensus 286 tpgllIValfgIvIL------WmYgsFW~--T~~liI~GG 317 (484)
.|.-||.|+||+=+= |-||+||+ .++.+++++
T Consensus 245 lPlt~i~g~fGMN~~~~p~~~~~~g~~~~~~~~~~~~~~~ 284 (292)
T PF01544_consen 245 LPLTFITGIFGMNFKGMPELDWPYGYFFVIILGLMILVAI 284 (292)
T ss_dssp HHHHHHTTSTTS-SS---SSSSSS-SHHH--HHHHHHHHH
T ss_pred HHHHHHHHHhhCCccCCCccCCccHHHHHHHHHHHHHHHH
Confidence 688899999998332 66777776 444444333
No 172
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=27.50 E-value=1.7e+02 Score=28.75 Aligned_cols=14 Identities=50% Similarity=0.940 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHhh
Q 011502 291 VVALSGTILLWLYG 304 (484)
Q Consensus 291 IValfgIvILWmYg 304 (484)
.+++++++++|.|.
T Consensus 108 ~l~~~~~~~~~~Ys 121 (279)
T PRK09573 108 LIALLNSILLYLYA 121 (279)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444445554
No 173
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.49 E-value=94 Score=27.58 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhccccc
Q 011502 269 FLMVLVVAALVAFFIGF-------ALALVVVALSGTILLWLYGSFWTTFFVIFLGGLAFK 321 (484)
Q Consensus 269 ~Ll~lg~Aa~vv~flG~-------tpgllIValfgIvILWmYgsFW~T~~liI~GG~~Fs 321 (484)
.|+++|+.-+|+...-+ -|.+-+|||.||++= +=-+-..-=|+||..|.
T Consensus 4 yllslgAGllVGiiyaLl~vrsPAPP~iAlvGllGilvG----eq~~p~~~~ll~g~p~a 59 (93)
T COG4317 4 YLLSLGAGLLVGIIYALLKVRSPAPPAIALVGLLGILVG----EQIVPWAKRLLGGEPFA 59 (93)
T ss_pred HHHHHhhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH----HHHHHHHHHHhcCCchh
Confidence 46777776666554433 366778899998752 22222222355776553
No 174
>PF06157 DUF973: Protein of unknown function (DUF973); InterPro: IPR009321 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=27.32 E-value=6.4e+02 Score=25.99 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred hhhhhhhhhh------cchhHHHHHHHHHHHHHHHHH
Q 011502 234 TIRGIDSFMR------MGTTSFFSVIWCSILSVIAMV 264 (484)
Q Consensus 234 ~iRGfdSf~r------lGtas~f~ImWc~flS~tSm~ 264 (484)
.-|||.-+.+ .|.+...+++++.++-+++.+
T Consensus 66 lr~GF~~L~~~~~~~~iG~tG~~Lilig~il~iig~i 102 (285)
T PF06157_consen 66 LRRGFRILSSYDRDVGIGKTGATLILIGYILIIIGAI 102 (285)
T ss_pred HHHHHHHHHhhCCCccchhhhhHHHHHHHHHHHHHHH
Confidence 3678876654 466777778888887765554
No 175
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=27.09 E-value=4.1e+02 Score=26.97 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHh
Q 011502 289 LVVVALSGTILLWLY 303 (484)
Q Consensus 289 llIValfgIvILWmY 303 (484)
++.+|+.+.++.+.|
T Consensus 125 ~~~l~~~~~~~~~~Y 139 (297)
T PRK12871 125 VFVIMLYSYGIEAFY 139 (297)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456778888888887
No 176
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=26.92 E-value=3e+02 Score=26.76 Aligned_cols=87 Identities=30% Similarity=0.440 Sum_probs=46.2
Q ss_pred hhhhh--HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHH----------H
Q 011502 205 VQQVY--PVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSIL-SVIAMVGMFKFL----------M 271 (484)
Q Consensus 205 ver~w--PiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~fl-S~tSm~c~~y~L----------l 271 (484)
.+..| |.++ . +..+++=++.-|+|....-- .+..-.---|.+++ |+-+|+|+.|.+ +
T Consensus 40 ~~~~wwvp~~~---G-~agv~~G~l~P~lD~~~~~~------~~~~~~~~~w~~v~R~i~~FvGi~~airkl~w~s~~Q~ 109 (193)
T PF07281_consen 40 FSTSWWVPPLW---G-LAGVLLGLLLPWLDSFLGES------KPRSSRKPDWSSVLRSIGAFVGISFAIRKLPWSSSLQA 109 (193)
T ss_pred cCCcchhhHHH---H-HHHHHHHhhHHHHHHhcccc------cccCCccccHHHHHHHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34555 5443 2 33455556666777764332 11122334566666 777778887765 3
Q ss_pred HHHHHHH--HHHH------HhhhHHHHHHHHHHHHHHHH
Q 011502 272 VLVVAAL--VAFF------IGFALALVVVALSGTILLWL 302 (484)
Q Consensus 272 ~lg~Aa~--vv~f------lG~tpgllIValfgIvILWm 302 (484)
++..|.+ ..-| -|++.+. +||+.|.++.-.
T Consensus 110 s~~lalln~~LW~lfDrT~sGf~ls~-~va~~g~~~~~~ 147 (193)
T PF07281_consen 110 SITLALLNPGLWWLFDRTRSGFLLST-AVALLGTLIEYG 147 (193)
T ss_pred HHHHHHHHHHHHHHhCCchhHHHHHH-HHHHHHHHhhee
Confidence 3333322 2222 2555553 457888777655
No 177
>PLN00012 chlorophyll synthetase; Provisional
Probab=26.84 E-value=7.8e+02 Score=26.09 Aligned_cols=14 Identities=21% Similarity=0.223 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q 011502 288 ALVVVALSGTILLW 301 (484)
Q Consensus 288 gllIValfgIvILW 301 (484)
|-+++|.+-+.+.|
T Consensus 227 G~v~lG~~~~~lp~ 240 (375)
T PLN00012 227 GNYALGASYISLPW 240 (375)
T ss_pred hHHHHHHHHHHHHH
Confidence 55566554444443
No 178
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.79 E-value=2.6e+02 Score=32.03 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=19.4
Q ss_pred CcHHHHHHHhcc----ccchhhcCcCCCCCCChHHH
Q 011502 428 TSEDEVVRLLNC----TDHYSALGLSRFENVDVSIL 459 (484)
Q Consensus 428 ts~dEV~RIl~c----~D~YevLGv~r~~~id~s~L 459 (484)
...++.-|++.- ..|=++||..|.+-.+++.+
T Consensus 591 ~~~~~~~~ll~~~~~llsyisaLg~~r~~~~~~~~~ 626 (704)
T TIGR01666 591 AYLQKGFRLLKLNHSLLSYISALGAHRDRLKNLQQT 626 (704)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHhhCCChHHH
Confidence 355666666653 44559999988753344333
No 179
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=26.77 E-value=6.7e+02 Score=25.30 Aligned_cols=37 Identities=24% Similarity=0.557 Sum_probs=20.9
Q ss_pred HHHHHhhhHH-HHHHHHHHH---HHHHHhhhhhhHHHHHHhhccc
Q 011502 279 VAFFIGFALA-LVVVALSGT---ILLWLYGSFWTTFFVIFLGGLA 319 (484)
Q Consensus 279 vv~flG~tpg-llIValfgI---vILWmYgsFW~T~~liI~GG~~ 319 (484)
...|+++-+. ..+-|-+|. +++|+| ++++++++|+..
T Consensus 240 f~~Yv~~~~~y~~~YGalgsvi~lmlw~y----~~~~I~l~Gae~ 280 (303)
T COG1295 240 FGYYLSNFANYSSTYGALGSVIILLLWLY----ISALIILLGAEL 280 (303)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHH----HHHHHHHHhHHH
Confidence 3445555444 445555554 456655 557777888754
No 180
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=26.39 E-value=85 Score=30.44 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 011502 275 VAALVAFFIGFALALVVVALSGTIL 299 (484)
Q Consensus 275 ~Aa~vv~flG~tpgllIValfgIvI 299 (484)
+.+++++++++.|-+++++++++++
T Consensus 233 ~~~lv~~l~~l~p~~~~~~~~~~~~ 257 (262)
T PF14257_consen 233 LSGLVVFLVGLLPWLPLILIIGLLV 257 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666555444443
No 181
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=26.29 E-value=5e+02 Score=23.68 Aligned_cols=24 Identities=33% Similarity=0.693 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Q 011502 327 LALFITTMYSIYCAWTYVGWLGLLLALNL 355 (484)
Q Consensus 327 ~vlli~t~Ys~YCv~v~VGWLGl~LslNL 355 (484)
++.++..+|++ |+.|+|+=-.+|+
T Consensus 127 ~~~~~~~~~~~-----~Lly~Gv~~~~~i 150 (170)
T PF06930_consen 127 LVGLIALIYSV-----YLLYLGVPIFMNI 150 (170)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhCc
Confidence 66666666665 5788998888877
No 182
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=26.27 E-value=3.2e+02 Score=28.46 Aligned_cols=67 Identities=22% Similarity=0.247 Sum_probs=44.6
Q ss_pred HhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Q 011502 229 LWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWT 308 (484)
Q Consensus 229 ~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~ 308 (484)
.|....-+-..-++.+|..|+-+-.|..++|++.-.-+. ..=+-...-.+|.+.|+.+||..+.++.
T Consensus 288 ~~~~~~~~~~~~l~~~Gr~SL~VF~~~~vl~~~~~~~~~-------------~~~~~~~~~~~v~l~gl~~l~~~A~~~~ 354 (358)
T PF10129_consen 288 GWRWLRRRWLRPLILLGRHSLPVFCVGVVLSLAGQFVLF-------------TTPGSWWMQTLVNLAGLALLWAVAWFRE 354 (358)
T ss_pred ccHhHhhhhhhHHHHHccCchHHHHHHHHHHHHHHHHHh-------------ccCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667888999999999999999888876422111 1111223334566778888888877653
No 183
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=26.12 E-value=5.2e+02 Score=23.81 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+..+++++++.++.|.|.
T Consensus 92 ~~~~~~~~~~~~~~~~Ys 109 (257)
T PF01040_consen 92 PWFLLILLLGFLLGLLYS 109 (257)
T ss_pred chhHHHHHHHHHHHHHHh
Confidence 444445555555555555
No 184
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=25.84 E-value=6.5e+02 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.285 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 011502 328 ALFITTMYSIYCAWTY 343 (484)
Q Consensus 328 vlli~t~Ys~YCv~v~ 343 (484)
+++-...|+.|-+-.+
T Consensus 157 ~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 157 LLMSTIGYLVYVVVAK 172 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566777766554
No 185
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.83 E-value=1.3e+03 Score=28.31 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhccch-HHHHHhhhhhhHhhhhhhhhHHHHHHH-----------HHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011502 175 TLKAAIELLERQSPM-LMTNIYNAHDYVSRKVQQVYPVALNHL-----------GHFAKIMLLLSMLWLDCTIRGIDSFM 242 (484)
Q Consensus 175 l~kq~~~wl~~qkp~-~~t~~~~~rd~v~~~ver~wPiV~~~~-----------~~~g~L~lLll~~W~DC~iRGfdSf~ 242 (484)
...|=--|+-+++|+ +-....-..+.....-.-.|.-...++ .-++-+++..+..|+- |.|..++
T Consensus 426 ~L~~~lFWv~s~~Pi~l~w~~~~~~~l~~l~~~~~~~~l~~~l~~~~~~~~~~~~l~~~lll~~~~~~~r---~~~~~~l 502 (1109)
T PRK10929 426 ATHRYLFWVADVSPISLSYPLEIAQDLRRLLSLDTFSQLGKASVMMLTSKETLLPLFGALLLVGFSISSR---RHYHAFL 502 (1109)
T ss_pred HHHHhhhccCCCCCCChHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 456667899999999 211111111111111222333333333 1233345555666764 4444444
Q ss_pred h-----cch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHH
Q 011502 243 R-----MGT-------TSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLYGSFWTTF 310 (484)
Q Consensus 243 r-----lGt-------as~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmYgsFW~T~ 310 (484)
+ .|. -.+..++|+.++++ +..++.+++..|.-.+...++....|-.+-+.. .++|.|- ++.
T Consensus 503 ~~~~~~vg~v~~D~~~~T~~al~~t~l~al--P~pl~~~~~g~~l~~~~~~~~~~~~~~~~~~~~--~~~w~~~---~~~ 575 (1109)
T PRK10929 503 ERSSSRVGKVTQDHFSLTLRTVFWSILVAS--PLPVLWAALGYGLQNAWPYPLAVAIGDGVTATV--PLLWVFM---ICA 575 (1109)
T ss_pred HHHHHhcCCcccccccccHHHHHHHHHHHh--HHHHHHHHHHHHhhhhhhhhhHhhccHHHHHHH--HHHHHHH---HHH
Confidence 3 554 24678899988887 444444444444443445555555555554432 3566643 444
Q ss_pred HHHHhhccc
Q 011502 311 FVIFLGGLA 319 (484)
Q Consensus 311 ~liI~GG~~ 319 (484)
.+.-=+|++
T Consensus 576 ~~~~~~Gl~ 584 (1109)
T PRK10929 576 TFARPNGLF 584 (1109)
T ss_pred HHcCCCCee
Confidence 455567765
No 186
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=25.79 E-value=5.9e+02 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.148 Sum_probs=6.1
Q ss_pred hhhhhHHHHHHhh
Q 011502 304 GSFWTTFFVIFLG 316 (484)
Q Consensus 304 gsFW~T~~liI~G 316 (484)
..||+.+.+.+++
T Consensus 450 ~~f~~~~~~~~~~ 462 (481)
T TIGR00879 450 GVFIFFGGLNVLG 462 (481)
T ss_pred ceehhHHHHHHHH
Confidence 3455555443333
No 187
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.75 E-value=4e+02 Score=29.36 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 011502 291 VVALSGTILLWLYGSFWT 308 (484)
Q Consensus 291 IValfgIvILWmYgsFW~ 308 (484)
..++|+..+-|++-+++.
T Consensus 70 gf~~~~~~~~Wi~~~~~~ 87 (518)
T COG0815 70 GFGFFLAGFYWLGTSLGV 87 (518)
T ss_pred HHHHHHHhHHHHhhHhhh
Confidence 345666667777655444
No 188
>PRK01265 heat shock protein HtpX; Provisional
Probab=25.71 E-value=2.9e+02 Score=28.78 Aligned_cols=6 Identities=17% Similarity=-0.324 Sum_probs=2.7
Q ss_pred HHHHHh
Q 011502 432 EVVRLL 437 (484)
Q Consensus 432 EV~RIl 437 (484)
-|+|++
T Consensus 289 ~~~~~~ 294 (324)
T PRK01265 289 LVEYWK 294 (324)
T ss_pred hhhhhc
Confidence 444444
No 189
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=25.57 E-value=6.9e+02 Score=25.44 Aligned_cols=19 Identities=16% Similarity=0.101 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 011502 287 LALVVVALSGTILLWLYGS 305 (484)
Q Consensus 287 pgllIValfgIvILWmYgs 305 (484)
+-.+.+++.+|++.|.|-.
T Consensus 105 ~~~~~l~~~ai~~~~~YS~ 123 (282)
T PRK13105 105 WASGLVLAVSVFAVVAYSA 123 (282)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 5566777778888887764
No 190
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=25.49 E-value=3.5e+02 Score=27.36 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=13.0
Q ss_pred HHhhhhHHHHHHHhhhhhh
Q 011502 341 WTYVGWLGLLLALNLSFVS 359 (484)
Q Consensus 341 ~v~VGWLGl~LslNLsFlS 359 (484)
-..+.|+-+++++-..++-
T Consensus 122 ~~~~s~~~l~~~~~~~~~~ 140 (288)
T TIGR02854 122 GDGVSWKFILIGFPILYYF 140 (288)
T ss_pred ccCchHHHHHHHHHHHHHH
Confidence 4567788888777776643
No 191
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=25.27 E-value=4.6e+02 Score=30.00 Aligned_cols=35 Identities=29% Similarity=0.185 Sum_probs=17.8
Q ss_pred cHHHHHHHhc---c-ccchhhcCcCCCCCCChHHHHHHHh
Q 011502 429 SEDEVVRLLN---C-TDHYSALGLSRFENVDVSILKREYR 464 (484)
Q Consensus 429 s~dEV~RIl~---c-~D~YevLGv~r~~~id~s~LKKeYR 464 (484)
..++..|++. + ..|=.+||-.|.+ ++..++...|.
T Consensus 595 ~~~~~~~ll~~~~~ll~~isal~a~r~~-~~~~~~~~~~~ 633 (701)
T TIGR01667 595 YLEDGFRLLTLSHTLLSYISALGAHRER-LLNPELAAELL 633 (701)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc-cCChhHHHHHH
Confidence 3445555544 2 3344778876663 33444444443
No 192
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=25.11 E-value=84 Score=28.25 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011502 247 TSFFSVIWCSILSVIAMVGMFKFLMVLV 274 (484)
Q Consensus 247 as~f~ImWc~flS~tSm~c~~y~Ll~lg 274 (484)
.-|+++.|..++-+...++.+++|.++|
T Consensus 66 ~~F~L~~~~ti~lv~~~~~~I~lL~svG 93 (103)
T PF12955_consen 66 VPFWLFAGFTIALVVLVAGAIGLLFSVG 93 (103)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3456666666666655555555555544
No 193
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=25.09 E-value=2.1e+02 Score=26.13 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHhh
Q 011502 285 FALALVVVALSGTILLWLYG 304 (484)
Q Consensus 285 ~tpgllIValfgIvILWmYg 304 (484)
.||+.++.-++|+++|++..
T Consensus 59 ~~PAmilt~~~G~~ll~~~~ 78 (147)
T PF03653_consen 59 MTPAMILTWISGLLLLFLNP 78 (147)
T ss_pred HhHHHHHHHHHHHHHHHHhh
Confidence 58999999999988888854
No 194
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=25.06 E-value=5.5e+02 Score=24.00 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 011502 215 HLGHFAKIMLLLSMLWLDC 233 (484)
Q Consensus 215 ~~~~~g~L~lLll~~W~DC 233 (484)
+.....+.++..+...+.+
T Consensus 300 ~~i~i~~~~~~~v~er~~e 318 (419)
T COG0577 300 GAIGIYNILLVSVLERTRE 318 (419)
T ss_pred cchhhhhhHHHHHHHHHHH
Confidence 3344444555555554443
No 195
>PRK10649 hypothetical protein; Provisional
Probab=25.01 E-value=6.6e+02 Score=27.89 Aligned_cols=119 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHh-hhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHh--hhHHHHH
Q 011502 223 MLLLSMLW-LDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAF--------FIG--FALALVV 291 (484)
Q Consensus 223 ~lLll~~W-~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~--------flG--~tpgllI 291 (484)
.+++..+| .-+.+ |---+|+=.+.+.+|+|++++.-+.-....-..+.-+....|.. |+. +..-++.
T Consensus 49 ~~~~~~~~~~~~~l--~p~~~~~~~~~~~~vl~~~~l~~~~Y~~~yg~~~~~~mi~~v~eTn~~Ea~e~ls~~~~~~~~l 126 (577)
T PRK10649 49 ALLFSSLWLIPVFL--FPRRIRIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLFVMFETNTNEASEYLSQYFSLKIVL 126 (577)
T ss_pred HHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHh-----------hhhhhHHHHHHhhcc-------------cccccchhHHHHHHHHHHHHHHHHh
Q 011502 292 VALSGTILLWLY-----------GSFWTTFFVIFLGGL-------------AFKFTHERLALFITTMYSIYCAWTY 343 (484)
Q Consensus 292 ValfgIvILWmY-----------gsFW~T~~liI~GG~-------------~FsL~HeR~vlli~t~Ys~YCv~v~ 343 (484)
+|++=+++.++. .-.++.++++++++. .|..+|..+.--++-....|-+..+
T Consensus 127 ~~~l~~l~~~~~~~r~~~~~~~~~~~~~~~~l~l~~~~~~~~~k~~~~~~~~~~r~~~~~~~~~~p~~~~~~~~~~ 202 (577)
T PRK10649 127 IALAYTAVAVLLWTRLRPVYIPWPWRYVVSFALLYGLILHPIAMNTFIKHKPFEKTLDKLASRMEPAAPWQFLTGY 202 (577)
T ss_pred HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHhccchhHHHHHHHH
No 196
>PRK06926 flagellar motor protein MotP; Reviewed
Probab=25.00 E-value=62 Score=32.82 Aligned_cols=17 Identities=41% Similarity=0.440 Sum_probs=11.8
Q ss_pred hhhh-hHHHHHHhhcccc
Q 011502 304 GSFW-TTFFVIFLGGLAF 320 (484)
Q Consensus 304 gsFW-~T~~liI~GG~~F 320 (484)
.+|| ..+++||+||...
T Consensus 33 ~~~~~~~s~lIV~GGt~~ 50 (271)
T PRK06926 33 LSFIDLTSILIVTGGLCA 50 (271)
T ss_pred HHHhhHhHHHHHHHHHHH
Confidence 3444 6788888888754
No 197
>PF13787 HXXEE: Protein of unknown function with HXXEE motif
Probab=24.93 E-value=4.1e+02 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=11.7
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 011502 280 AFFIGFALALVVVALSGT 297 (484)
Q Consensus 280 v~flG~tpgllIValfgI 297 (484)
..+-+|+||++...+.-+
T Consensus 92 ~~~~~Y~PGl~Ta~ll~l 109 (116)
T PF13787_consen 92 FIFRKYNPGLVTAILLFL 109 (116)
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 445568898877665544
No 198
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.70 E-value=1.4e+02 Score=32.27 Aligned_cols=28 Identities=36% Similarity=0.772 Sum_probs=18.7
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh-h---hhhhH
Q 011502 282 FIGFALALVVVALSGTILLWLY-G---SFWTT 309 (484)
Q Consensus 282 flG~tpgllIValfgIvILWmY-g---sFW~T 309 (484)
|+++.+.|.||=++..+|.|+. | -||+.
T Consensus 228 fl~~IlvLaIvRlILF~I~~il~~g~~g~W~F 259 (372)
T KOG2927|consen 228 FLAFILVLAIVRLILFGITWILTGGKHGFWLF 259 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCceEec
Confidence 4455567888888888888853 3 46764
No 199
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=24.51 E-value=5.7e+02 Score=24.18 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 011502 265 GMFKFLMVLVVAALVAFFIGF 285 (484)
Q Consensus 265 c~~y~Ll~lg~Aa~vv~flG~ 285 (484)
|..+.++++.+++++...++-
T Consensus 36 g~~~~~~~~~~~~~~~~~~~~ 56 (290)
T PF09991_consen 36 GLKYGLIALLAAAVLLALFGG 56 (290)
T ss_pred ChHHHHHHHHHHHHHHHHHHh
Confidence 344455555555544444433
No 200
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=24.51 E-value=5.4e+02 Score=23.38 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 011502 290 VVVALSGTILLWLYG 304 (484)
Q Consensus 290 lIValfgIvILWmYg 304 (484)
+++++++++++....
T Consensus 127 l~~~l~~l~i~~l~~ 141 (205)
T PF01027_consen 127 LFIGLIGLIIFGLVS 141 (205)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555444444433
No 201
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=37 Score=35.18 Aligned_cols=14 Identities=50% Similarity=1.144 Sum_probs=0.0
Q ss_pred HhhhhhhHHHHHHh
Q 011502 302 LYGSFWTTFFVIFL 315 (484)
Q Consensus 302 mYgsFW~T~~liI~ 315 (484)
+||-||||.+++.+
T Consensus 115 LYGPfWI~~TlVf~ 128 (290)
T KOG3114|consen 115 LYGPFWITATLVFA 128 (290)
T ss_pred ccccHHHHHHHHHH
No 202
>COG3307 RfaL Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=24.38 E-value=7.4e+02 Score=24.97 Aligned_cols=29 Identities=10% Similarity=0.188 Sum_probs=14.6
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 011502 234 TIRGIDSFMRMGTTSFFSVIWCSILSVIA 262 (484)
Q Consensus 234 ~iRGfdSf~rlGtas~f~ImWc~flS~tS 262 (484)
..+-...+...++-.++.+.|+.+.++.+
T Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 94 (424)
T COG3307 66 LLLSLLNLLLFLRLLLLLLLWLLFSSLSA 94 (424)
T ss_pred hhHHhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444444444444555556666655553
No 203
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.34 E-value=8.5e+02 Score=27.64 Aligned_cols=45 Identities=7% Similarity=0.093 Sum_probs=36.6
Q ss_pred HHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011502 191 MTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTI 235 (484)
Q Consensus 191 ~t~~~~~rd~v~~~ver~wPiV~~~~~~~g~L~lLll~~W~DC~i 235 (484)
.+.+....|-...+.+|-|-.+.+=.-..=.=.|-.+..|+|--.
T Consensus 128 la~ai~sGe~~~eFl~~E~~~~~~~y~~~Yer~LeSl~~~~diY~ 172 (527)
T COG1955 128 LAYALDSGEDLKEFLEREQDTTMDEYETEYERALESLDVWKDIYV 172 (527)
T ss_pred HHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888889999999988888888888999999998543
No 204
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=24.18 E-value=2.9e+02 Score=24.93 Aligned_cols=45 Identities=9% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHH--------HHHHHHHHHHH----HHHhhhhh
Q 011502 263 MVGMFKFLMVLVVAALVAFFIGFALA--------LVVVALSGTIL----LWLYGSFW 307 (484)
Q Consensus 263 m~c~~y~Ll~lg~Aa~vv~flG~tpg--------llIValfgIvI----LWmYgsFW 307 (484)
++-++.+|++++++++.+.|..-... +++--++||++ +|+|..++
T Consensus 79 ls~v~Nilvsv~~~~~~~~~~~~~~~~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~ 135 (142)
T PF11712_consen 79 LSTVFNILVSVFAVFFAGWYWAGYSFGGWSFPYRVLLGLFGALLVLVAEVVLYIRYL 135 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
No 205
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=24.11 E-value=2.2e+02 Score=34.58 Aligned_cols=30 Identities=27% Similarity=0.155 Sum_probs=21.1
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhhhhhHHH
Q 011502 282 FIGFALALVVVALSGTILLWLYGSFWTTFF 311 (484)
Q Consensus 282 flG~tpgllIValfgIvILWmYgsFW~T~~ 311 (484)
.+-+++++.+|+++|++-||=---==++..
T Consensus 994 iv~l~v~~i~v~v~G~M~lwgI~LnaVS~v 1023 (1145)
T TIGR00918 994 LIVLVLALMTVELFGMMGLLGIKLSAIPVV 1023 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 334677888899999999986555444444
No 206
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=24.09 E-value=4e+02 Score=26.41 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=6.0
Q ss_pred cchhHHHHHHHHH
Q 011502 244 MGTTSFFSVIWCS 256 (484)
Q Consensus 244 lGtas~f~ImWc~ 256 (484)
++++ ++.++|+.
T Consensus 45 llaA-~~fvl~~i 56 (230)
T PRK11909 45 IGAA-FSFVIMMF 56 (230)
T ss_pred HHHH-HHHHHHHh
Confidence 3444 55555654
No 207
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=24.07 E-value=3.5e+02 Score=26.16 Aligned_cols=20 Identities=30% Similarity=0.846 Sum_probs=12.9
Q ss_pred HHHHHHhhhhhhHHHHHHhhcccc
Q 011502 297 TILLWLYGSFWTTFFVIFLGGLAF 320 (484)
Q Consensus 297 IvILWmYgsFW~T~~liI~GG~~F 320 (484)
++++|+| +++.+++.|+...
T Consensus 234 ~lllWly----~~~~i~l~Ga~ln 253 (259)
T TIGR00765 234 FLMLWVY----LSWLVVLLGAEIT 253 (259)
T ss_pred HHHHHHH----HHHHHHHHHHHHH
Confidence 4567765 5567777776554
No 208
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=24.03 E-value=8.7e+02 Score=25.67 Aligned_cols=40 Identities=13% Similarity=0.003 Sum_probs=26.8
Q ss_pred HHHHHhhhhhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 011502 190 LMTNIYNAHDYVSRKVQQVYPVALNHLGHFAKIMLLLSML 229 (484)
Q Consensus 190 ~~t~~~~~rd~v~~~ver~wPiV~~~~~~~g~L~lLll~~ 229 (484)
++....|.--.....+=..=|.|.+|+++.+-|+.+.++.
T Consensus 16 ~k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~ 55 (459)
T PF10337_consen 16 LKIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVI 55 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHH
Confidence 4445555555555555566688888888888887776654
No 209
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=23.92 E-value=61 Score=28.94 Aligned_cols=20 Identities=40% Similarity=0.750 Sum_probs=15.9
Q ss_pred HHHHhhhHHHHHHHHHHHHH
Q 011502 280 AFFIGFALALVVVALSGTIL 299 (484)
Q Consensus 280 v~flG~tpgllIValfgIvI 299 (484)
-.|.|+..||+|.||.+++|
T Consensus 78 n~fyGf~igL~i~~lva~~l 97 (97)
T PF05440_consen 78 NMFYGFIIGLVIAGLVALIL 97 (97)
T ss_pred hHHHHHHHHHHHHHHHHHhC
Confidence 45789999999988888764
No 210
>PF07543 PGA2: Protein trafficking PGA2; InterPro: IPR011431 A Saccharomyces cerevisiae (Baker's yeast) member of this family (PGA2, P53903 from SWISSPROT) is a single pass membrane protein which has been implicated in protein trafficking [, ].
Probab=23.90 E-value=25 Score=32.60 Aligned_cols=17 Identities=29% Similarity=0.581 Sum_probs=13.8
Q ss_pred hhHHHHHHhhcccccccc
Q 011502 307 WTTFFVIFLGGLAFKFTH 324 (484)
Q Consensus 307 W~T~~liI~GG~~FsL~H 324 (484)
|| =++||||||+|...|
T Consensus 17 ~i-RLViIVggYiLlRPY 33 (140)
T PF07543_consen 17 WI-RLVIIVGGYILLRPY 33 (140)
T ss_pred hh-hhhhhhhHHHHHHHH
Confidence 65 578999999988776
No 211
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=23.73 E-value=5.3e+02 Score=26.26 Aligned_cols=46 Identities=20% Similarity=0.367 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHH
Q 011502 206 QQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVI 253 (484)
Q Consensus 206 er~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~Im 253 (484)
.+.|-.+...+.|+|-+=++.=++|+=.. |-.---++|+.-++.+.
T Consensus 133 ~q~WRl~T~~flH~~~~Hl~fNml~l~~l--G~~iE~~~G~~~~l~l~ 178 (276)
T PRK10907 133 FELWRYFTHALLHFSLLHILFNLLWWWYL--GGAVEKRLGSGKLIVIT 178 (276)
T ss_pred CCcHHHHhHHHHhCCHHHHHHHHHHHHHH--HHHHHHHHChHHHHHHH
Confidence 47799999999999877666555554332 22222467777766554
No 212
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=23.57 E-value=1.1e+03 Score=27.12 Aligned_cols=108 Identities=18% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 011502 222 IMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (484)
Q Consensus 222 L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILW 301 (484)
+.+-++++|.-+.+=-|--=.| |=.||-|.|.+-|++=-++.= |+| .-|+|+..++-+=+|-+|=|-+=|
T Consensus 29 ~~~~~~~~w~~~~~~d~~~~~r------~e~~~p~wl~~~~~~~~~~~~---~~~-~~~~~~~~~~~~d~~~~~~~p~~~ 98 (697)
T PF09726_consen 29 LYVKFLLVWALVLLADFMLEFR------FEYLWPFWLLLRSVYDSFKYQ---GLA-FSVFFVCIAFTSDLICLFFIPVHW 98 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhH------HHHHHHHHHHHHHHHHHHhhh---hhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh----hhhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHh
Q 011502 302 LY----GSFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTY 343 (484)
Q Consensus 302 mY----gsFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~ 343 (484)
+| .|-|+--+-=-=+|.++. -+.|-|+.+|-=+.++.+
T Consensus 99 ~~~~~~~~v~~~~~~~~~~~~~~~----~~~~~~~~~~~e~~~~~~ 140 (697)
T PF09726_consen 99 LFFAASTYVWVQYVWHTDRGICLP----TVSLWILFVYVEASVRLK 140 (697)
T ss_pred HHHHHhHHHHHHHhhhccCCccHH----HHHHHHHHHHHHHHHhhc
No 213
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=23.54 E-value=1.9e+02 Score=29.09 Aligned_cols=20 Identities=10% Similarity=0.504 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 011502 284 GFALALVVVALSGTILLWLY 303 (484)
Q Consensus 284 G~tpgllIValfgIvILWmY 303 (484)
|+.+..+++++++.+..|.|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~ 48 (430)
T PRK11006 29 GYLPWFLLASVTGLLIWHFW 48 (430)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555444444
No 214
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=23.49 E-value=3.4e+02 Score=21.32 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=41.2
Q ss_pred hhhHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Q 011502 198 HDYVSRKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIA 262 (484)
Q Consensus 198 rd~v~~~ver~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tS 262 (484)
.+.+..++++-||-.......+.-++.++--.. +---.|.--.++..+.|.++||.++
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~-------vP~~~Rv~~~~~v~~~W~~~LS~~~ 66 (68)
T PF04117_consen 9 WEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRY-------VPPHYRVLFVNVVSFFWNTYLSYIA 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcc-------cChhhhhhhhhhHHHHHHHHHHHHh
Confidence 457888888888887776666665554443322 3444677778899999999999864
No 215
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=23.39 E-value=1.1e+02 Score=34.23 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=21.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 011502 276 AALVAFFIGFALALVVVALSGTILLWLY 303 (484)
Q Consensus 276 Aa~vv~flG~tpgllIValfgIvILWmY 303 (484)
--..+..+.++.+...++++|.+-||=.
T Consensus 668 ~~~~~~~~~~~i~~i~~~v~G~m~~~g~ 695 (798)
T PF02460_consen 668 NPRSSLIVTLSILSIDVGVIGFMSLWGV 695 (798)
T ss_pred cchhHHHHHHHHHHHHHHHHHhhhcccc
Confidence 4444556677888899999999988854
No 216
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=23.37 E-value=1.6e+02 Score=35.59 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=17.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHhhh
Q 011502 280 AFFIGFALALVVVALSGTILLWLYGS 305 (484)
Q Consensus 280 v~flG~tpgllIValfgIvILWmYgs 305 (484)
+..++.+..+.+++++|++-+|=..-
T Consensus 1076 aliv~l~I~~i~~~~~g~M~~~gisL 1101 (1204)
T TIGR00917 1076 AVNVVISVGMIVVNLVGIMHLWNISL 1101 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 33445677788888888877776543
No 217
>PRK14416 membrane protein; Provisional
Probab=23.35 E-value=4e+02 Score=26.36 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=11.5
Q ss_pred hHHHHHHHhhhhhhh----HHHHHHhhhc
Q 011502 346 WLGLLLALNLSFVSS----DALIFFLKSK 370 (484)
Q Consensus 346 WLGl~LslNLsFlSn----DiL~~lLq~n 370 (484)
|++++|++=++.+-= |=+.-++++.
T Consensus 159 ~~~~~l~~~i~~~v~~~h~~nI~r~~~~~ 187 (200)
T PRK14416 159 LISVLLFLMIGIKFVLDNRKSLRDPANRR 187 (200)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHHcCC
Confidence 444444444444433 4455566543
No 218
>PHA03239 envelope glycoprotein M; Provisional
Probab=23.34 E-value=5.3e+02 Score=28.36 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 011502 246 TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (484)
Q Consensus 246 tas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILW 301 (484)
-+||++-.|-..+..+.+.+++-++..+.+=.++.+|+=--+|-=+=.++|..|||
T Consensus 254 gNsF~v~~~~~v~~ai~~F~vL~iiyliv~E~vL~~Yv~vl~G~~lG~lia~~iL~ 309 (429)
T PHA03239 254 ALHFGLDIPKATSGALSMFIVLGIIYLMMAELTVAHYVHVLIGPHLGMIIACAIAG 309 (429)
T ss_pred hcceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHH
Confidence 36888889999999999999988888888889999997655555555566777777
No 219
>PRK04897 heat shock protein HtpX; Provisional
Probab=23.32 E-value=2.1e+02 Score=28.87 Aligned_cols=13 Identities=0% Similarity=0.194 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhh
Q 011502 292 VALSGTILLWLYG 304 (484)
Q Consensus 292 ValfgIvILWmYg 304 (484)
+|++..+|.|+++
T Consensus 49 ~~~~~~~~~~~~~ 61 (298)
T PRK04897 49 IGVIYALIMIFQS 61 (298)
T ss_pred HHHHHHHHHHHhh
Confidence 3444444444443
No 220
>PRK09577 multidrug efflux protein; Reviewed
Probab=23.27 E-value=2.5e+02 Score=33.01 Aligned_cols=50 Identities=12% Similarity=0.178 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 011502 245 GTTSFFSVIWCSILSV-IAMVGMFKFLMVLVVAALVAFFIGFALALVVVAL 294 (484)
Q Consensus 245 Gtas~f~ImWc~flS~-tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIVal 294 (484)
|-.-.++|||.+|=|+ .+++-++-+.+++..+..+..++|+++-++..+-
T Consensus 346 ~~ilv~lvl~l~l~s~r~~liv~~~iP~s~~~~~~~m~~~g~~ln~~sl~g 396 (1032)
T PRK09577 346 AGVLVFLVMFLFMQNFRATLIPTLVVPVALLGTFGVMLAAGFSINVLTMFG 396 (1032)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 3344556666665543 2233333345555555566666677666555433
No 221
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=23.19 E-value=5.1e+02 Score=25.56 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q 011502 290 VVVALSGTILLWLY 303 (484)
Q Consensus 290 lIValfgIvILWmY 303 (484)
+++++.++++...|
T Consensus 119 ~~l~~~~~~l~~~Y 132 (289)
T COG0382 119 FLLSLAALVLALAY 132 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 222
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=23.11 E-value=6.4e+02 Score=23.78 Aligned_cols=58 Identities=17% Similarity=0.107 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH---H--HHHHHHHHHHHHHhhhhhhHHHHHHhhccccccc
Q 011502 266 MFKFLMVLVVAALVAFFIGFALA---L--VVVALSGTILLWLYGSFWTTFFVIFLGGLAFKFT 323 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~flG~tpg---l--lIValfgIvILWmYgsFW~T~~liI~GG~~FsL~ 323 (484)
-..++..+.++.+++..+-..-- . .++++...++.+....+.+.|.++++.-+.|--+
T Consensus 85 ~~NI~fTl~lg~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyg~~gvll~l~~y~~~~~ 147 (219)
T PF05857_consen 85 SQNILFTLALGLLALYLLDRIKKKKKKKGIIVLLLLLIALSLPVDYGIYGVLLILIFYLFRRN 147 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555566555555555443221 1 4556666666666667777776666665555444
No 223
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=22.96 E-value=4.1e+02 Score=27.34 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=13.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 011502 206 QQVYPVALNHLGHFAKIMLLL 226 (484)
Q Consensus 206 er~wPiV~~~~~~~g~L~lLl 226 (484)
+..=|-+..-+.+-+-+.+++
T Consensus 114 ~~Vgp~~g~~~~~~~~~a~~~ 134 (297)
T PRK13021 114 SIVGPQVGQELAEQGGLALLV 134 (297)
T ss_pred eEECHHHHHHHHHHHHHHHHH
Confidence 556677777766666554443
No 224
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=22.91 E-value=1e+02 Score=26.83 Aligned_cols=21 Identities=48% Similarity=0.498 Sum_probs=13.9
Q ss_pred hHHHHHHHhhhhhhhHHHHHHh
Q 011502 346 WLGLLLALNLSFVSSDALIFFL 367 (484)
Q Consensus 346 WLGl~LslNLsFlSnDiL~~lL 367 (484)
-|+||||+-| +||+|+-..=|
T Consensus 8 lL~l~LA~lL-lisSevaa~~~ 28 (95)
T PF07172_consen 8 LLGLLLAALL-LISSEVAAREL 28 (95)
T ss_pred HHHHHHHHHH-HHHhhhhhHHh
Confidence 4778888866 56777665444
No 225
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.57 E-value=7.1e+02 Score=25.42 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhhhH
Q 011502 293 ALSGTILLWLYGSFWTT 309 (484)
Q Consensus 293 alfgIvILWmYgsFW~T 309 (484)
.++.+.++|--+.+|+-
T Consensus 196 ~l~~~~~~w~~~~~~~~ 212 (314)
T PRK12878 196 LLYAGSIAWTIGYDTIY 212 (314)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555553
No 226
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=22.40 E-value=8e+02 Score=24.61 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
+.++++|++|+++-|.|-
T Consensus 116 ~~~l~l~~~~~~~~~~Yt 133 (296)
T PRK05951 116 IGAVTLALLGVFLWTCYM 133 (296)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 457888889999999883
No 227
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=22.30 E-value=3.8e+02 Score=25.86 Aligned_cols=22 Identities=9% Similarity=0.233 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHhhc
Q 011502 292 VALSGTILLWLYGSFWTTFFVIFLGG 317 (484)
Q Consensus 292 ValfgIvILWmYgsFW~T~~liI~GG 317 (484)
.|-+.++++|+|=+ +.++++|+
T Consensus 233 ~gsvi~lllWly~~----~~ill~ga 254 (263)
T TIGR00766 233 FGSVLGLMVFFYFF----AWLILFAT 254 (263)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHH
Confidence 45556688898754 44555555
No 228
>PF06550 DUF1119: Protein of unknown function (DUF1119); InterPro: IPR010545 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=22.19 E-value=7e+02 Score=26.16 Aligned_cols=73 Identities=22% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHH-------------------------------HHH
Q 011502 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMV-------------------------------GMF 267 (484)
Q Consensus 219 ~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~-------------------------------c~~ 267 (484)
+--+||+++++=++-.+|++--+ +.+.++|--|.-+..+. =+.
T Consensus 45 fT~~mL~~ik~~~~~~I~~ii~~------~i~~~~~YVf~~l~~~~~~~~~~~~~~a~~~ai~~~~~L~~ypEWYviD~~ 118 (283)
T PF06550_consen 45 FTAFMLLAIKYGKKWIIRLIIYL------AIFLTIFYVFSALLPLLLTNAGLVNIIALILAIALTALLYKYPEWYVIDIA 118 (283)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 011502 268 KFLMVLVVAALVAFFIGFALALVVVALSGT 297 (484)
Q Consensus 268 y~Ll~lg~Aa~vv~flG~tpgllIValfgI 297 (484)
.++++.|+|+..+..+|..|+++...+++|
T Consensus 119 Gil~~aG~aaiFGISl~~lpaiiLL~iLAV 148 (283)
T PF06550_consen 119 GILMGAGAAAIFGISLGILPAIILLAILAV 148 (283)
T ss_pred HHHHHhHHHHHHhhhccHHHHHHHHHHHHH
No 229
>TIGR00820 zip ZIP zinc/iron transport family. transport has not been characterized, but these systems probably function as secondary carriers.
Probab=22.12 E-value=7.6e+02 Score=25.36 Aligned_cols=27 Identities=15% Similarity=0.213 Sum_probs=18.5
Q ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHH
Q 011502 242 MRMGTTSFFSVIWCSILSVIAMVGMFK 268 (484)
Q Consensus 242 ~rlGtas~f~ImWc~flS~tSm~c~~y 268 (484)
++-|..--..++++.+++++.++|+.-
T Consensus 222 ~~~~~~~~~~~~~~~~fsl~tPiG~~i 248 (324)
T TIGR00820 222 SQAEFKCKSVTIMCTFFAVTTPLGIAI 248 (324)
T ss_pred hccCCCchHHHHHHHHHHHhhHHHHHH
Confidence 334444444678888999999988754
No 230
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=22.12 E-value=4e+02 Score=21.06 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=37.9
Q ss_pred hhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh--hhhhhHHHHHHhhc
Q 011502 241 FMRMGTTSFFSVIWCSILS-VIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWLY--GSFWTTFFVIFLGG 317 (484)
Q Consensus 241 f~rlGtas~f~ImWc~flS-~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWmY--gsFW~T~~liI~GG 317 (484)
.....+..+..++.+++++ ..++.+..+.+--..++-+ ..+.. ...++..++|.+++--- ...|+ |++++++|
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~--~~pv~~~i~~~~~~~e~~~~~~~~-g~~l~~~g 120 (126)
T PF00892_consen 45 FKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV-SILQY--LSPVFAAILGWLFLGERPSWRQII-GIILIIIG 120 (126)
T ss_pred ccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH-HHHHH--HHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHH
Confidence 5556666666666677674 6777777666554443322 22222 34445555565544221 23344 44445444
Q ss_pred c
Q 011502 318 L 318 (484)
Q Consensus 318 ~ 318 (484)
.
T Consensus 121 ~ 121 (126)
T PF00892_consen 121 V 121 (126)
T ss_pred H
Confidence 3
No 231
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=22.11 E-value=9.3e+02 Score=25.30 Aligned_cols=19 Identities=32% Similarity=0.709 Sum_probs=12.0
Q ss_pred HHHHhhhhHHHHHHHhhhh
Q 011502 339 CAWTYVGWLGLLLALNLSF 357 (484)
Q Consensus 339 Cv~v~VGWLGl~LslNLsF 357 (484)
-+|+|+.|+=+++.-=+++
T Consensus 253 LlWlyls~~I~L~Gael~~ 271 (412)
T PRK04214 253 LLWIYLLWVLVLLGASLTS 271 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3577777777777555443
No 232
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=22.01 E-value=1.7e+02 Score=26.19 Aligned_cols=39 Identities=13% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhh-hhhhHHHHHHhhc
Q 011502 279 VAFFIGFALALVVVALSGTILLWLYG-SFWTTFFVIFLGG 317 (484)
Q Consensus 279 vv~flG~tpgllIValfgIvILWmYg-sFW~T~~liI~GG 317 (484)
=+||+-|-.|-++..++-.+||.|-| +-|+--.+.+++|
T Consensus 15 kaQYl~~faGgll~~~il~~iLYi~Gv~~~ici~~~~~~~ 54 (96)
T PF13571_consen 15 KAQYLFYFAGGLLGLFILFVILYIAGVNQWICIGFGVVSG 54 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Confidence 35788888887777777888888866 5566444444333
No 233
>PRK14397 membrane protein; Provisional
Probab=22.01 E-value=8.2e+02 Score=24.62 Aligned_cols=14 Identities=36% Similarity=0.588 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhhhH
Q 011502 274 VVAALVAFFIGFAL 287 (484)
Q Consensus 274 g~Aa~vv~flG~tp 287 (484)
|+|..++.++.+.|
T Consensus 105 GVAt~~Gvll~l~p 118 (222)
T PRK14397 105 AVATTIGVFIPLAF 118 (222)
T ss_pred HHHHHHHHHHHHhH
Confidence 44555555555544
No 234
>PF14752 RBP_receptor: Retinol binding protein receptor
Probab=21.86 E-value=1.2e+03 Score=26.62 Aligned_cols=71 Identities=25% Similarity=0.433 Sum_probs=45.9
Q ss_pred HHHHHHHhhhhhhHHHHHHh--------hcccc--------------cccchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011502 296 GTILLWLYGSFWTTFFVIFL--------GGLAF--------------KFTHERLALFITTMYSIYCAWTYVGWLGLLLAL 353 (484)
Q Consensus 296 gIvILWmYgsFW~T~~liI~--------GG~~F--------------sL~HeR~vlli~t~Ys~YCv~v~VGWLGl~Lsl 353 (484)
+..++|..++.|.|..++++ .-..| .++|.|+ +-..-|-+|+.-+=+|.++-+.=+
T Consensus 418 ~~~~~~~l~~~~p~~~~~~~~~ilQ~~~a~~~Fl~~k~~~~~~~~~~~l~nRr~--f~~~~y~~f~~Nv~~Gl~~~~~R~ 495 (617)
T PF14752_consen 418 NLLLFWILGSIWPFWLVLVLAVILQNILARFFFLQDKLGPADKGKPLALDNRRA--FHIFTYFLFFYNVLVGLLSCLWRL 495 (617)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheecccccccCCCCceeechhh--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888876554332 11222 3344443 344568899999999999888877
Q ss_pred hhhhhhhHHHHHHhh
Q 011502 354 NLSFVSSDALIFFLK 368 (484)
Q Consensus 354 NLsFlSnDiL~~lLq 368 (484)
=++.+-|=++..=+.
T Consensus 496 l~s~l~~~~~~~R~D 510 (617)
T PF14752_consen 496 LKSALFGIVHISRMD 510 (617)
T ss_pred HHHHHHHHHHHHHhh
Confidence 777777766665544
No 235
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.86 E-value=4.8e+02 Score=24.09 Aligned_cols=7 Identities=43% Similarity=0.525 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 011502 287 LALVVVA 293 (484)
Q Consensus 287 pgllIVa 293 (484)
.+.+++|
T Consensus 32 ~aA~~vg 38 (140)
T COG1585 32 LAALAVG 38 (140)
T ss_pred HHHHHHH
Confidence 3444444
No 236
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=21.75 E-value=3.3e+02 Score=22.87 Aligned_cols=47 Identities=19% Similarity=0.489 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 011502 249 FFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWL 302 (484)
Q Consensus 249 ~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWm 302 (484)
||-.+|=.| -++-+++.|+.-...++.++++.|++.+|+.=+|.=|.
T Consensus 6 ~fk~iW~~~-------DIi~Fila~i~i~it~F~~n~~~g~i~i~I~l~l~G~i 52 (63)
T PF06341_consen 6 FFKTIWKYF-------DIILFILAMIFINITAFLINQIAGLISIGITLFLAGLI 52 (63)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778632 23345556666666778888888888888876665553
No 237
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=21.65 E-value=4.1e+02 Score=28.81 Aligned_cols=18 Identities=17% Similarity=0.058 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011502 248 SFFSVIWCSILSVIAMVG 265 (484)
Q Consensus 248 s~f~ImWc~flS~tSm~c 265 (484)
+=.++||-+++++++-.-
T Consensus 237 ~H~l~~yGFil~f~aT~v 254 (389)
T PRK15033 237 FHHLTFYGFMLCFAATVV 254 (389)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346778888777766543
No 238
>PLN02715 lipid phosphate phosphatase
Probab=21.55 E-value=3.3e+02 Score=28.58 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=18.3
Q ss_pred HhhhhHHHHHHHhhhhhhhHHHHHHhhhccccC
Q 011502 342 TYVGWLGLLLALNLSFVSSDALIFFLKSKVNQH 374 (484)
Q Consensus 342 v~VGWLGl~LslNLsFlSnDiL~~lLq~nv~~~ 374 (484)
.+.+|+|+++++=++.+-+|+ ||+-++..
T Consensus 121 ~~~~~l~l~~al~~t~lit~~----lK~~vGRp 149 (327)
T PLN02715 121 LHHSILGLLFAVLITGVITDS----IKVATGRP 149 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhCCC
Confidence 366788888877666665555 55444443
No 239
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=21.55 E-value=8.4e+02 Score=24.56 Aligned_cols=59 Identities=8% Similarity=-0.043 Sum_probs=28.4
Q ss_pred hhhhHHHHHHhhcccccccchhHHHHHH---HHHHHHHHHHhhh----hHHHHHHHhhhhhhhHHHHHH
Q 011502 305 SFWTTFFVIFLGGLAFKFTHERLALFIT---TMYSIYCAWTYVG----WLGLLLALNLSFVSSDALIFF 366 (484)
Q Consensus 305 sFW~T~~liI~GG~~FsL~HeR~vlli~---t~Ys~YCv~v~VG----WLGl~LslNLsFlSnDiL~~l 366 (484)
...++|+.|+.+|..+.-+.. +-=+| ++...|++-.-+| +++++.++ +.++.|=+|..|
T Consensus 61 a~vvsGigFlgaG~I~~~~~~--v~GlTTaAtlw~taaiG~~~g~G~~~~Av~~~v-~~l~~l~~l~~~ 126 (225)
T PRK15385 61 AQIVSGIGFLGAGVIMREGMN--VRGLNTAATLWCSAGIGVLCGLGQFKNALAATI-IILCANILLREA 126 (225)
T ss_pred HHHHHHHHHHHheeeeccCCC--CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH-HHHHHHHHHHHH
Confidence 456788888887755443332 22233 4444455444443 22232222 344555455444
No 240
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=21.52 E-value=1e+03 Score=25.65 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=21.8
Q ss_pred hHHHHHHhhcccccccch--hHHHHHHHHHHHHHHHHhhhhHHH
Q 011502 308 TTFFVIFLGGLAFKFTHE--RLALFITTMYSIYCAWTYVGWLGL 349 (484)
Q Consensus 308 ~T~~liI~GG~~FsL~He--R~vlli~t~Ys~YCv~v~VGWLGl 349 (484)
++..+++++.++-+..|- -+.++|+..| -|+.+|..|+++
T Consensus 169 v~~qvV~v~~ll~~~l~~~~pllipil~~y--~g~~vr~t~v~L 210 (345)
T PF07260_consen 169 VIAQVVLVAILLSMHLEPQDPLLIPILALY--AGIAVRFTIVCL 210 (345)
T ss_pred HHHHHHHHHHHHccccCccccHHHHHHHHH--HHHHHHHHHHHH
Confidence 334444455555454443 3344444433 367889999885
No 241
>MTH00124 ND4 NADH dehydrogenase subunit 4; Provisional
Probab=21.51 E-value=6.9e+02 Score=26.63 Aligned_cols=18 Identities=28% Similarity=0.534 Sum_probs=12.1
Q ss_pred HHHHHhhhhhhhHHHHHH
Q 011502 349 LLLALNLSFVSSDALIFF 366 (484)
Q Consensus 349 l~LslNLsFlSnDiL~~l 366 (484)
+..++.+.|.|||.++.+
T Consensus 102 ~~~~~~~~~~s~dl~~~y 119 (457)
T MTH00124 102 LQTFLILAFSATELTLFY 119 (457)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 345667778888877544
No 242
>PRK03427 cell division protein ZipA; Provisional
Probab=21.47 E-value=73 Score=33.67 Aligned_cols=30 Identities=7% Similarity=0.066 Sum_probs=24.1
Q ss_pred CCCChHHHHHHHhhhhhhcCCCcccccccc
Q 011502 452 ENVDVSILKREYRKKVCCLNHFCCFAYFEH 481 (484)
Q Consensus 452 ~~id~s~LKKeYRKkALlvHPdk~~~~~~~ 481 (484)
..+.-..|...-.+.-|.+-.+-.|.+++.
T Consensus 209 ~~f~G~~Ll~~le~~Gf~fGem~IFHRh~~ 238 (333)
T PRK03427 209 SELNGEVLLNSIQQAGFQFGDMNIFHRHLS 238 (333)
T ss_pred CcccHHHHHHHHHHcCCcccCCcceeeccc
Confidence 457788888888888888888888888754
No 243
>KOG2292 consensus Oligosaccharyltransferase, STT3 subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=2.9e+02 Score=31.81 Aligned_cols=98 Identities=26% Similarity=0.437 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------HHHHHHH---HHHHHhh-----hhhhHHHHH-------H
Q 011502 261 IAMVGMFKFLMVLVVAALVAFFIGFALALV-----------VVALSGT---ILLWLYG-----SFWTTFFVI-------F 314 (484)
Q Consensus 261 tSm~c~~y~Ll~lg~Aa~vv~flG~tpgll-----------IValfgI---vILWmYg-----sFW~T~~li-------I 314 (484)
++-+-+.|=|=+-||.-+++.|++..||-. -+|+|++ -.||.=+ .||.+..-+ -
T Consensus 132 iaTY~ltkEl~~~gaGL~AA~fiaivPgYiSRSVAGSYDNE~IAIfal~~T~ylwiKavkTGSifwa~~~aL~YFYMVsa 211 (751)
T KOG2292|consen 132 IATYLLTKELKSAGAGLLAAAFIAIVPGYISRSVAGSYDNEGIAIFALLFTYYLWIKAVKTGSIFWAACCALAYFYMVSA 211 (751)
T ss_pred HHHHHHHHHHhcccccHHHHHHHhhCcccccccccccccchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhheee
Confidence 344556677777777777777887777643 2455554 4577643 588776543 2
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHhhh-----hHHHHHHHhhhhh
Q 011502 315 LGGLAFKFTHERLALFITTMYSIYCAWTYVG-----WLGLLLALNLSFV 358 (484)
Q Consensus 315 ~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VG-----WLGl~LslNLsFl 358 (484)
-|||.|-.|---+-+|++.+-.=|.-++|+. =||.+||+-..|+
T Consensus 212 WGGYvFiiNLIPLHVlvlllmGRyS~rlyiaY~t~y~lGtllsmqipfV 260 (751)
T KOG2292|consen 212 WGGYVFIINLIPLHVLVLLLMGRYSSRLYIAYTTFYCLGTLLSMQIPFV 260 (751)
T ss_pred ccceEEEEechHHHHHHHHHhcccccceeeehhhHHHHHHHHHccCccc
Confidence 4999999886554444443322222222222 2788898888885
No 244
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=21.39 E-value=6.1e+02 Score=26.86 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=14.5
Q ss_pred chhH-HHHHHHHHHHHHH---HHhhhhHHHHHH
Q 011502 324 HERL-ALFITTMYSIYCA---WTYVGWLGLLLA 352 (484)
Q Consensus 324 HeR~-vlli~t~Ys~YCv---~v~VGWLGl~Ls 352 (484)
-||+ .+++++|-..|.+ .++.-|-.++-.
T Consensus 138 ~E~~~~~lv~~m~~~f~~~~~~~~P~~~~~~~g 170 (390)
T TIGR01197 138 LEAFVALLVTIVAICFAYELFYAKPGQVKVLFG 170 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeCCCHHHHhhc
Confidence 3666 4444555554543 344457665533
No 245
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.35 E-value=9.8e+02 Score=25.76 Aligned_cols=83 Identities=22% Similarity=0.214 Sum_probs=40.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHhhhhhhHHH----HHHhhcccccccchhHHHHHHHHHHHHHH-------------H
Q 011502 279 VAFFIGFALALVVVALSGTILLWLYGSFWTTFF----VIFLGGLAFKFTHERLALFITTMYSIYCA-------------W 341 (484)
Q Consensus 279 vv~flG~tpgllIValfgIvILWmYgsFW~T~~----liI~GG~~FsL~HeR~vlli~t~Ys~YCv-------------~ 341 (484)
.-++.|...|..+-+++..++|=...+||...+ ++++||+++ .|.|.+..-..+=-.|+. .
T Consensus 390 ~~~~~G~l~~~~~a~~~~~~vlP~~~~f~~L~l~l~~~l~~~~~~~--~~p~~~~~g~~~~v~f~~~~~~~n~~~~d~~~ 467 (650)
T PF04632_consen 390 RLFLIGALLGAVLAFLYLFFVLPHLDGFPLLALVLAPFLFLGGLLM--ARPRTAYIGLGFAVFFLLLLGPGNPYSYDFAT 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHH--cCchHHHHHHHHHHHHHHHhcCCCCCCCCHHH
Confidence 334444444544444444444433444665433 344555544 466665433222222222 2
Q ss_pred HhhhhHHHHHHHhhhhhhhHHH
Q 011502 342 TYVGWLGLLLALNLSFVSSDAL 363 (484)
Q Consensus 342 v~VGWLGl~LslNLsFlSnDiL 363 (484)
..-.-+|+++++=.+++.-.++
T Consensus 468 f~n~~la~l~G~~~a~l~~~li 489 (650)
T PF04632_consen 468 FLNRALAILLGIVIAALVFRLI 489 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777665443
No 246
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=21.23 E-value=1.3e+03 Score=26.60 Aligned_cols=6 Identities=17% Similarity=0.434 Sum_probs=2.5
Q ss_pred hHHHHH
Q 011502 456 VSILKR 461 (484)
Q Consensus 456 ~s~LKK 461 (484)
+..+++
T Consensus 469 P~~~~~ 474 (742)
T TIGR01299 469 PDMIKH 474 (742)
T ss_pred HHHHHH
Confidence 344443
No 247
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=21.22 E-value=6.1e+02 Score=22.82 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=55.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh-cc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011502 204 KVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMR-MG--TTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVA 280 (484)
Q Consensus 204 ~ver~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~r-lG--tas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv 280 (484)
.+...+|.+..++.-+|.+.|+-+-+..-..-+--+.--. -. ....=..+=.++++++-+-.+++++..++.-...
T Consensus 50 ~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~NPk~il~~~~~~~~~~~~- 128 (191)
T PF01810_consen 50 ALLKSSPWLFMILKLLGALYLLYLGYKLLRSKFSSKSSTQSEAKKQSKSKSFLTGFLLNLLNPKAILFWLAVFPQFISP- 128 (191)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHhcccCcchhhhhhhccccHHHHHHHHHHHHHHhHHHHHHHHHhhhcccCc-
Confidence 3556688888888888888877665443322211111111 11 0122233445667788888877776665543332
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHhh
Q 011502 281 FFIGFALALVVVALSGTILLWLYG 304 (484)
Q Consensus 281 ~flG~tpgllIValfgIvILWmYg 304 (484)
.+-.....++++|.+...++|++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~w~~~ 152 (191)
T PF01810_consen 129 EYSSTQFLVFILGIFLGSLLWFLL 152 (191)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 333444456666666666677643
No 248
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=21.18 E-value=6.1e+02 Score=30.17 Aligned_cols=49 Identities=22% Similarity=0.549 Sum_probs=39.9
Q ss_pred hhhhHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 011502 305 SFWTTFFVIFLGGLAFKFTHERLALFITTMYSIYCAWTYVGWLGLLLAL 353 (484)
Q Consensus 305 sFW~T~~liI~GG~~FsL~HeR~vlli~t~Ys~YCv~v~VGWLGl~Lsl 353 (484)
-||-...+..++--....+|+=--..-.+||.+|+|-.=+-=|-++.||
T Consensus 558 LFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAM 606 (822)
T KOG3609|consen 558 LFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAM 606 (822)
T ss_pred HHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHH
Confidence 4898877777888888889998887888999999998877666666654
No 249
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=21.02 E-value=2.3e+02 Score=28.60 Aligned_cols=38 Identities=18% Similarity=0.533 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHh
Q 011502 266 MFKFLMVLVVAALVAFFIGFA-----LALVVVALSGTILLWLY 303 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~flG~t-----pgllIValfgIvILWmY 303 (484)
+...++.+.++.+++.++... +-++.+|++|+++.|.|
T Consensus 102 ~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Y 144 (306)
T TIGR02056 102 ITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIY 144 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH
No 250
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=20.98 E-value=3.6e+02 Score=30.16 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 011502 219 FAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTI 298 (484)
Q Consensus 219 ~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIv 298 (484)
|-.+.-|.+++=+.-.-=|+.-.++.||-+.=.|+|...+.+.-- ++=+ +.++.|+.+.+|.- -++..++
T Consensus 22 F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~-----~~Ei----~l~~vi~~~~~~~~-f~~~t~v 91 (497)
T COG5265 22 FFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPT-----LVEI----SLVAVILWRVYGWW-FALTTLV 91 (497)
T ss_pred HHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHH-----HHHH----HHHHHHHHhhcccH-HHHHHHH
Confidence 444555677888888888999999999999999999877665321 1111 12222333333322 1334567
Q ss_pred HHHHhhhhhhHHH
Q 011502 299 LLWLYGSFWTTFF 311 (484)
Q Consensus 299 ILWmYgsFW~T~~ 311 (484)
.+|+|..||+..+
T Consensus 92 tv~lY~~ftv~~s 104 (497)
T COG5265 92 TVILYLLFTVIVS 104 (497)
T ss_pred HHHHHHHhheeeh
Confidence 8999999998543
No 251
>PRK01637 hypothetical protein; Reviewed
Probab=20.97 E-value=4.8e+02 Score=25.85 Aligned_cols=11 Identities=45% Similarity=1.277 Sum_probs=5.0
Q ss_pred HHhhhhHHHHH
Q 011502 341 WTYVGWLGLLL 351 (484)
Q Consensus 341 ~v~VGWLGl~L 351 (484)
|+|.-|.-+++
T Consensus 248 Wlyl~~~ilL~ 258 (286)
T PRK01637 248 WVYLSWCIVLL 258 (286)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 252
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=20.94 E-value=21 Score=27.21 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=16.5
Q ss_pred ccchhhcCcCCCCCCChHHH-HHHHhhhhhhcCCCc
Q 011502 440 TDHYSALGLSRFENVDVSIL-KREYRKKVCCLNHFC 474 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~L-KKeYRKkALlvHPdk 474 (484)
.++|++||.++. ++ +....-..-.+|||-
T Consensus 6 ~~~~~i~G~~~~------~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSPE------EIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-HH------HHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCHH------HhccCCHHHHHhhcCHHH
Confidence 567888888873 33 333444555777773
No 253
>PRK14585 pgaD putative PGA biosynthesis protein; Provisional
Probab=20.92 E-value=3.2e+02 Score=25.96 Aligned_cols=9 Identities=11% Similarity=0.615 Sum_probs=5.4
Q ss_pred HHHHHHHHH
Q 011502 250 FSVIWCSIL 258 (484)
Q Consensus 250 f~ImWc~fl 258 (484)
=++.|+.|+
T Consensus 22 T~laW~gf~ 30 (137)
T PRK14585 22 TTILWTLFA 30 (137)
T ss_pred HHHHHHHHH
Confidence 345677665
No 254
>PF01124 MAPEG: MAPEG family; InterPro: IPR001129 This entry represents a widespread superfamily known as MAPEG (Membrane Associated Proteins in Eicosanoid and Glutathione metabolism) []. Included are: 5-lipoxygenase activating protein (gene FLAP), which seems to be required for the activation of 5-lipoxygenase. Leukotriene C4 synthase (2.5.1.37 from EC), which catalyses the production of LTC4 from LTA4. Microsomal glutathione S-transferase II (2.5.1.18 from EC) (GST-II), which also produces LTC4 from LTA4. Prostaglandin E synthase, which catalyses the synthesis of PGE2 from PGH2 (produced by cyclooxygenase from arachidonic acid). Because of structural similarities in the active sites of FLAP, LTC4 synthase and PGE synthase, substrates for each enzyme can compete with one another and modulate synthetic activity.; PDB: 3DWW_A 2Q7R_D 2Q7M_B 2PNO_J 3B29_A 3HKK_A 2UUI_A 3PCV_A 2UUH_A 3LEO_A ....
Probab=20.88 E-value=1.7e+02 Score=24.19 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHH--------HHHHHHHHHHHHHHhh
Q 011502 275 VAALVAFFIGFALA--------LVVVALSGTILLWLYG 304 (484)
Q Consensus 275 ~Aa~vv~flG~tpg--------llIValfgIvILWmYg 304 (484)
+++=+++.++|..+ .+++++..++.||.+.
T Consensus 90 ~~~R~~y~~~y~~~~~~~~R~~~~~~~~~~~~~l~~~~ 127 (129)
T PF01124_consen 90 VVARVAYAVGYIAGNIPPLRSLGFLVGLLCLLALALAA 127 (129)
T ss_dssp HHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555444 5666666666666553
No 255
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family. These proteins are members of the NhaD Na+:H+ Antiporter (NhaD) Family (TC 2.A.62). A single member of the NhaD family has been characterized. This protein is the NhaD protein of Vibrio parahaemolyticus which has 12 GES predicted transmembrane regions. It has been shown to catalyze Na+/H+ antiport, but Li+ can also be a substrate.
Probab=20.71 E-value=7.6e+02 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=15.2
Q ss_pred HhhhhH-HHHHHHhhhhhhhHHHHHHh
Q 011502 342 TYVGWL-GLLLALNLSFVSSDALIFFL 367 (484)
Q Consensus 342 v~VGWL-Gl~LslNLsFlSnDiL~~lL 367 (484)
.++-|+ +++-++==+|++||.-.-++
T Consensus 97 r~Ll~~l~l~t~~lSa~LdN~tt~ll~ 123 (420)
T TIGR00775 97 KKLLWLLGFLSFFLSAALDNLTSIIII 123 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344443 44445555799999755443
No 256
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=20.41 E-value=4.9e+02 Score=26.51 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhh
Q 011502 222 IMLLLSMLWLDCTIRGIDSFM 242 (484)
Q Consensus 222 L~lLll~~W~DC~iRGfdSf~ 242 (484)
++...-..|-|..=|++|.-.
T Consensus 58 l~~aaa~~~Nd~~D~~iD~~~ 78 (306)
T PRK13362 58 LVVASGCALNNCIDRDIDAKM 78 (306)
T ss_pred HHHHHHHHHhChHHhCcCCCC
Confidence 334444556666669999754
No 257
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=20.32 E-value=2.6e+02 Score=27.42 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 011502 252 VIWCSILSVIAMVGMFKFLMVLVVAALVAFFIGFALALVVVALSGTILLW 301 (484)
Q Consensus 252 ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILW 301 (484)
+..+.++.+. .+.+.-+..+||-.+.+=-+++.-+..++.+++|+.++|
T Consensus 305 ~~~~l~~~~~-~~~~~~~~~~l~~~~~l~p~~a~w~p~ii~~~~~~~l~~ 353 (354)
T PF03739_consen 305 LFIALLLGFL-YYILFSFFSSLGENGNLPPFIAAWLPNIIFLILGLYLLR 353 (354)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444 778888888888888777777777777666666665554
No 258
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=20.28 E-value=1.1e+03 Score=25.39 Aligned_cols=52 Identities=13% Similarity=0.284 Sum_probs=34.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchhHHHHHHHHHHHHH
Q 011502 203 RKVQQVYPVALNHLGHFAKIMLLLSMLWLDCTIRGIDSFMRMGTTSFFSVIWCSILSV 260 (484)
Q Consensus 203 ~~ver~wPiV~~~~~~~g~L~lLll~~W~DC~iRGfdSf~rlGtas~f~ImWc~flS~ 260 (484)
...-+-||...+.-.+..--+++...+|.-..--|- .++..+..+=||+++.
T Consensus 330 ~~~~~d~~~A~~~alra~la~~~~~l~Wi~t~W~~G------~~~~~~~~v~~~lfa~ 381 (650)
T PF04632_consen 330 FPLHRDWPLALRNALRAFLAILIAGLFWIATGWPSG------ATAVMMAAVVSSLFAT 381 (650)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHcCCChh------HHHHHHHHHHHHHHcC
Confidence 444556788888888888888888899987755442 2334455566666655
No 259
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=20.14 E-value=7.9e+02 Score=25.32 Aligned_cols=17 Identities=18% Similarity=0.147 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011502 267 FKFLMVLVVAALVAFFI 283 (484)
Q Consensus 267 ~y~Ll~lg~Aa~vv~fl 283 (484)
+..|+.+++.+..+.|+
T Consensus 351 ~~~l~~~~~~~~l~~y~ 367 (435)
T PRK10435 351 FGELTGIAVLLTMLPYF 367 (435)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 260
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=20.14 E-value=9.4e+02 Score=26.01 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=7.8
Q ss_pred hhhHHHHHHhhcc
Q 011502 306 FWTTFFVIFLGGL 318 (484)
Q Consensus 306 FW~T~~liI~GG~ 318 (484)
|-+|..++.++||
T Consensus 127 f~LTf~lV~vs~y 139 (406)
T PF11744_consen 127 FILTFCLVAVSGY 139 (406)
T ss_pred HHHHHHhheeecC
Confidence 4455566666665
No 261
>PF10032 Pho88: Phosphate transport (Pho88); InterPro: IPR019263 This entry represents proteins involved in inorganic phosphate transport, as well as telomere length regulation and maintenance [, , , ].
Probab=20.06 E-value=1.5e+02 Score=28.85 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 011502 266 MFKFLMVLVVAALVAFFIGFALALVVVALSGTILLWL 302 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~flG~tpgllIValfgIvILWm 302 (484)
+...|+.+++.+.+-+|+|||+-||+=.+.++.=||-
T Consensus 97 ~ks~l~g~~m~~fmHl~~~~~~PLl~Qsi~~~k~l~e 133 (192)
T PF10032_consen 97 IKSQLMGVAMMGFMHLYMKYTNPLLMQSIMPPKNLLE 133 (192)
T ss_pred HHHHHHHHHHHHHHHHHHcCcchhHHHHhhhhHHHHh
Confidence 4567888888999999999999999999999887764
No 262
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=20.05 E-value=2.7e+02 Score=32.71 Aligned_cols=66 Identities=15% Similarity=0.296 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHH----HHHHHHHHH
Q 011502 234 TIRGIDSFMRMGTTSFFSVIWCSILSVIAMVGMFKFLMVLVVAALVAF-FIGFALALV----VVALSGTIL 299 (484)
Q Consensus 234 ~iRGfdSf~rlGtas~f~ImWc~flS~tSm~c~~y~Ll~lg~Aa~vv~-flG~tpgll----IValfgIvI 299 (484)
+...+...+=++-...|+||+..|=|+....-++-.+-.-.+.++.++ ++|+++.+. ++++.||++
T Consensus 876 ~~~~l~~~~~~a~~li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV 946 (1051)
T TIGR00914 876 ATKRLQIVVPVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAV 946 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHH
No 263
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=20.02 E-value=5.1e+02 Score=23.63 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=5.2
Q ss_pred HHHHHHHhhh
Q 011502 336 SIYCAWTYVG 345 (484)
Q Consensus 336 s~YCv~v~VG 345 (484)
..||+++|.+
T Consensus 106 ~~~~~r~~~~ 115 (141)
T PF12576_consen 106 GGYAFRQYTG 115 (141)
T ss_pred HHHHHHHHHH
Confidence 4555555543
Done!