Query 011502
Match_columns 484
No_of_seqs 57 out of 59
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 09:27:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ys8_A RAB-related GTP-binding 99.2 7.8E-12 2.7E-16 101.4 5.4 48 427-476 14-61 (90)
2 2ctq_A DNAJ homolog subfamily 99.0 6.8E-11 2.3E-15 99.1 0.2 43 432-476 7-54 (112)
3 1wjz_A 1700030A21RIK protein; 98.8 1.6E-09 5.5E-14 86.9 3.3 38 437-476 13-50 (94)
4 2dn9_A DNAJ homolog subfamily 98.8 2.3E-09 7.9E-14 83.8 3.6 36 439-476 6-41 (79)
5 2qwo_B Putative tyrosine-prote 98.8 7.8E-10 2.7E-14 92.1 0.7 41 434-476 26-67 (92)
6 2ctp_A DNAJ homolog subfamily 98.8 2.6E-09 9E-14 83.5 3.5 36 439-476 6-41 (78)
7 1hdj_A Human HSP40, HDJ-1; mol 98.8 3.1E-09 1.1E-13 82.9 3.5 35 440-476 3-37 (77)
8 2ctr_A DNAJ homolog subfamily 98.8 3.5E-09 1.2E-13 85.0 3.6 36 439-476 6-41 (88)
9 2ej7_A HCG3 gene; HCG3 protein 98.8 3.6E-09 1.2E-13 83.2 3.5 35 440-476 9-43 (82)
10 2o37_A Protein SIS1; HSP40, J- 98.7 3E-09 1E-13 86.2 2.7 38 436-475 4-41 (92)
11 2och_A Hypothetical protein DN 98.7 4.8E-09 1.6E-13 81.3 3.6 37 438-476 6-42 (73)
12 3ag7_A Putative uncharacterize 98.7 1.4E-09 4.7E-14 91.8 0.5 42 432-476 25-74 (106)
13 2cug_A Mkiaa0962 protein; DNAJ 98.7 4.4E-09 1.5E-13 84.4 3.5 35 440-476 17-51 (88)
14 2dmx_A DNAJ homolog subfamily 98.7 4.6E-09 1.6E-13 84.5 3.1 35 440-476 9-43 (92)
15 2ctw_A DNAJ homolog subfamily 98.7 4.2E-09 1.4E-13 88.0 2.9 35 440-476 17-51 (109)
16 2yua_A Williams-beuren syndrom 98.7 5.6E-09 1.9E-13 85.6 3.1 35 440-476 17-51 (99)
17 1bq0_A DNAJ, HSP40; chaperone, 98.7 6.8E-09 2.3E-13 85.4 3.6 35 440-476 3-37 (103)
18 1faf_A Large T antigen; J doma 98.7 2.1E-09 7.2E-14 85.8 0.3 36 440-475 11-46 (79)
19 2lgw_A DNAJ homolog subfamily 98.7 1.1E-08 3.9E-13 84.6 3.5 35 440-476 2-36 (99)
20 1iur_A KIAA0730 protein; DNAJ 98.6 6.7E-09 2.3E-13 85.1 1.7 35 440-476 16-50 (88)
21 2qsa_A DNAJ homolog DNJ-2; J-d 98.6 1.8E-08 6E-13 83.6 2.5 35 440-476 15-50 (109)
22 1gh6_A Large T antigen; tumor 98.5 2.3E-08 7.9E-13 85.4 2.6 36 439-476 7-44 (114)
23 2l6l_A DNAJ homolog subfamily 98.5 3.1E-08 1.1E-12 86.4 3.1 36 439-476 9-44 (155)
24 2guz_A Mitochondrial import in 98.5 3.1E-08 1E-12 77.3 2.6 35 440-475 14-48 (71)
25 1n4c_A Auxilin; four helix bun 98.5 4E-08 1.4E-12 90.7 2.1 44 431-476 100-151 (182)
26 3lz8_A Putative chaperone DNAJ 98.4 2.3E-08 7.9E-13 98.1 0.0 38 437-476 25-62 (329)
27 3bvo_A CO-chaperone protein HS 98.4 9.5E-08 3.2E-12 88.7 3.3 37 440-476 43-79 (207)
28 3apo_A DNAJ homolog subfamily 98.1 8.1E-07 2.8E-11 92.0 1.9 35 439-475 20-54 (780)
29 2guz_B Mitochondrial import in 97.0 0.0003 1E-08 55.4 2.5 36 441-476 5-41 (65)
30 3uo3_A J-type CO-chaperone JAC 96.9 0.00051 1.7E-08 62.6 3.4 24 453-476 29-52 (181)
31 2y4t_A DNAJ homolog subfamily 96.1 0.0044 1.5E-07 56.3 4.2 36 439-476 381-416 (450)
32 2pzi_A Probable serine/threoni 67.5 2.7 9.2E-05 43.2 2.8 33 440-474 629-663 (681)
33 3j1r_A Archaeal adhesion filam 28.2 43 0.0015 22.9 2.6 18 266-283 6-23 (26)
34 2iub_A CORA, divalent cation t 23.8 14 0.00046 36.0 -0.6 30 286-315 314-349 (363)
35 3arc_X Photosystem II PSBX pro 23.1 1.1E+02 0.0037 22.6 4.1 17 266-282 6-22 (39)
36 2hzc_A Splicing factor U2AF 65 21.7 66 0.0023 23.5 3.0 34 447-482 13-61 (87)
37 3s8f_C Cytochrome C oxidase po 21.6 81 0.0028 22.5 3.2 17 287-304 10-26 (34)
38 2knc_B Integrin beta-3; transm 20.4 1.1E+02 0.0037 24.7 4.2 20 283-302 15-34 (79)
No 1
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.8e-12 Score=101.41 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=44.3
Q ss_pred CCcHHHHHHHhccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 427 MTSEDEVVRLLNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 427 ~ts~dEV~RIl~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
-.+.++|++++.+.|||+||||++. ++.++|||+|||+|++.||||+-
T Consensus 14 ~~~~~~~~~~~~~~~~y~iLgv~~~--as~~eIk~aYr~la~~~HPDk~~ 61 (90)
T 2ys8_A 14 KEQADAIRRIRNSKDSWDMLGVKPG--ASRDEVNKAYRKLAVLLHPDKCV 61 (90)
T ss_dssp HHHHHHHHHHHTCSSHHHHHTCCTT--CCHHHHHHHHHHHHHHHCTTTCC
T ss_pred HHHHHHHHHHhcCCCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 3567889999999999999999995 99999999999999999999983
No 2
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=6.8e-11 Score=99.05 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=39.7
Q ss_pred HHHHHhcc-----ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 432 EVVRLLNC-----TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 432 EV~RIl~c-----~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+|+||+.| .|||++|||++. ++.++||++||+++++.||||+-
T Consensus 7 ~~~~i~~~~~~~~~d~Y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 54 (112)
T 2ctq_A 7 GMDAILNYRSEDTEDYYTLLGCDEL--SSVEQILAEFKVRALECHPDKHP 54 (112)
T ss_dssp CCCCCCCCCCCCCCCHHHHTTCCTT--SCHHHHHHHHHHHHHTTCTTTCT
T ss_pred hHHHHHhccccCCCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 57788888 799999999995 99999999999999999999984
No 3
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=98.81 E-value=1.6e-09 Score=86.91 Aligned_cols=38 Identities=26% Similarity=0.200 Sum_probs=35.0
Q ss_pred hccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 437 LNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 437 l~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+...|||+||||++. ++.++||++||+++++.||||+-
T Consensus 13 ~~~~~~y~iLgv~~~--as~~eIk~aYr~l~~~~HPDk~~ 50 (94)
T 1wjz_A 13 TLKKDWYSILGADPS--ANMSDLKQKYQKLILLYHPDKQS 50 (94)
T ss_dssp SSCSCHHHHTTCCTT--CCHHHHHHHHHHTTSSSCSTTCC
T ss_pred CCCCChHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 456899999999995 99999999999999999999974
No 4
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=2.3e-09 Score=83.76 Aligned_cols=36 Identities=19% Similarity=0.170 Sum_probs=33.7
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
..|||++|||++. ++.++||++||+++++.|||++-
T Consensus 6 ~~~~y~iLgv~~~--a~~~~Ik~ayr~l~~~~HPD~~~ 41 (79)
T 2dn9_A 6 SGDYYQILGVPRN--ASQKEIKKAYYQLAKKYHPDTNK 41 (79)
T ss_dssp CSCHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCS
T ss_pred CCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 4799999999995 99999999999999999999985
No 5
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=98.79 E-value=7.8e-10 Score=92.14 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=36.0
Q ss_pred HHHhcc-ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 434 VRLLNC-TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 434 ~RIl~c-~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.++|.. .++|++|||++. +++++|||+|||+|++.|||||-
T Consensus 26 ~~~L~~~~~~y~~Lgv~~~--as~~eIKkAYRklal~~HPDK~~ 67 (92)
T 2qwo_B 26 HTVLWAGETKWKPVGMADL--VTPEQVKKVYRKAVLVVHPCKAT 67 (92)
T ss_dssp GGTSCTTCCSCCCCCGGGS--SSHHHHHHHHHHHHHHTCHHHHT
T ss_pred HHHhcccccCCeecCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 445555 499999999995 99999999999999999999974
No 6
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.6e-09 Score=83.45 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=33.7
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
..|||++|||++. ++.++||++||+++++.|||++-
T Consensus 6 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 41 (78)
T 2ctp_A 6 SGDYYEILGVSRG--ASDEDLKKAYRRLALKFHPDKNH 41 (78)
T ss_dssp SCCHHHHHTCCTT--CCHHHHHHHHHHHHTTSCTTTCS
T ss_pred CCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 4799999999995 99999999999999999999983
No 7
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.77 E-value=3.1e-09 Score=82.89 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=33.0
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++. ++.++||++||+++++.|||++-
T Consensus 3 ~~~y~iLgv~~~--as~~~Ik~ayr~l~~~~HPD~~~ 37 (77)
T 1hdj_A 3 KDYYQTLGLARG--ASDEEIKRAYRRQALRYHPDKNK 37 (77)
T ss_dssp CCSHHHHTCCTT--CCHHHHHHHHHHHHHTTCTTTCC
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 699999999995 99999999999999999999974
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=3.5e-09 Score=84.97 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=33.6
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
..|||+||||++. ++.++|||+||+++++.||||+-
T Consensus 6 ~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 41 (88)
T 2ctr_A 6 SGSYYDILGVPKS--ASERQIKKAFHKLAMKYHPDKNK 41 (88)
T ss_dssp CCSHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCC
T ss_pred CCCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 4799999999995 99999999999999999999974
No 9
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=3.6e-09 Score=83.18 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=33.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||++. ++.++||++||+++++.|||++-
T Consensus 9 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 43 (82)
T 2ej7_A 9 VDYYEVLDVPRQ--ASSEAIKKAYRKLALKWHPDKNP 43 (82)
T ss_dssp CCHHHHTTCCTT--CCHHHHHHHHHHHHTTSCTTTCS
T ss_pred cCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 799999999995 99999999999999999999974
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=98.74 E-value=3e-09 Score=86.17 Aligned_cols=38 Identities=26% Similarity=0.259 Sum_probs=35.2
Q ss_pred HhccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 436 LLNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 436 Il~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
++...|||+||||++. ++.++||++||+++++.||||+
T Consensus 4 m~~~~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~ 41 (92)
T 2o37_A 4 MVKETKLYDLLGVSPS--ANEQELKKGYRKAALKYHPDKP 41 (92)
T ss_dssp CCSCCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCTTST
T ss_pred cccCCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCC
Confidence 4567899999999995 9999999999999999999997
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=98.74 E-value=4.8e-09 Score=81.25 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=34.1
Q ss_pred ccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 438 NCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 438 ~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.-.|||++|||++. ++.++||++||+++++.|||++-
T Consensus 6 ~~~~~y~iLgl~~~--a~~~eIk~ayr~l~~~~HPD~~~ 42 (73)
T 2och_A 6 KETGYYDVLGVKPD--ASDNELKKAYRKMALKFHPDKNP 42 (73)
T ss_dssp CCCCHHHHHTCCTT--CCHHHHHHHHHHHHHHTCTTTCT
T ss_pred CCCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCc
Confidence 45799999999995 99999999999999999999973
No 12
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=98.74 E-value=1.4e-09 Score=91.80 Aligned_cols=42 Identities=10% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHhcc--------ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 432 EVVRLLNC--------TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 432 EV~RIl~c--------~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+|+.+|.+ .|||++||+++ +++++|||+|||+|++.|||||-
T Consensus 25 ~ir~lL~~l~~~l~~~~d~Y~vl~~~~---As~~eIKkAYRklal~~HPDK~~ 74 (106)
T 3ag7_A 25 NIRSLLSTLQYILWSGSGWKPVPLMDM---IEGNAVRKSYQRALLILHPDKLQ 74 (106)
T ss_dssp CHHHHHTTGGGTSCTTSCCCCCCGGGS---CSHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHcCCCC---CCHHHHHHHHHHHHHHHCcCcCC
Confidence 45666654 59999999985 99999999999999999999974
No 13
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=98.74 E-value=4.4e-09 Score=84.38 Aligned_cols=35 Identities=26% Similarity=0.238 Sum_probs=33.3
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++. ++.++|||+||+++++.||||+-
T Consensus 17 ~d~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 51 (88)
T 2cug_A 17 FDPYRVLGVSRT--ASQADIKKAYKKLAREWHPDKNK 51 (88)
T ss_dssp SCHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTCC
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 799999999995 99999999999999999999974
No 14
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=4.6e-09 Score=84.54 Aligned_cols=35 Identities=20% Similarity=0.176 Sum_probs=33.1
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||++. ++.++||++||+++++.||||+-
T Consensus 9 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 43 (92)
T 2dmx_A 9 ANYYEVLGVQAS--ASPEDIKKAYRKLALRWHPDKNP 43 (92)
T ss_dssp CCHHHHHTCCTT--CCTTHHHHHHHHHHHHTCTTTCS
T ss_pred cCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCCCCCC
Confidence 699999999995 99999999999999999999974
No 15
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.72 E-value=4.2e-09 Score=88.00 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=33.3
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++. ++.++|||+|||+|++.||||+-
T Consensus 17 ~~~Y~vLgv~~~--as~~eIk~aYr~la~~~HPDk~~ 51 (109)
T 2ctw_A 17 ESLYHVLGLDKN--ATSDDIKKSYRKLALKYHPDKNP 51 (109)
T ss_dssp CCHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTST
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 799999999995 99999999999999999999984
No 16
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5.6e-09 Score=85.57 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=33.1
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||++. ++.++||++||++|++.||||+-
T Consensus 17 ~~~Y~vLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 51 (99)
T 2yua_A 17 TALYDLLGVPST--ATQAQIKAAYYRQCFLYHPDRNS 51 (99)
T ss_dssp SHHHHHHTCCTT--CCHHHHHHHHHHHHHHSCTTTCS
T ss_pred cCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 699999999995 99999999999999999999984
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=98.70 E-value=6.8e-09 Score=85.44 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=33.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||++. ++.++||++|||++++.||||+-
T Consensus 3 ~~~y~iLgv~~~--as~~eIk~ayr~l~~~~HPDk~~ 37 (103)
T 1bq0_A 3 QDYYEILGVSKT--AEEREIRKAYKRLAMKYHPDRNQ 37 (103)
T ss_dssp CCSTTTTSSCSS--CCHHHHHHHHHHHHTTTCTTTCT
T ss_pred CCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 699999999995 99999999999999999999975
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=98.69 E-value=2.1e-09 Score=85.76 Aligned_cols=36 Identities=17% Similarity=0.088 Sum_probs=33.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.++|++|||++...++.++||++|||+|++.||||+
T Consensus 11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~ 46 (79)
T 1faf_A 11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG 46 (79)
T ss_dssp HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 589999999995449999999999999999999996
No 19
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=1.1e-08 Score=84.58 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=32.9
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||+||||++. ++.++||++||+++++.||||+-
T Consensus 2 ~d~Y~iLgv~~~--as~~eIk~aYr~la~~~HPDk~~ 36 (99)
T 2lgw_A 2 ASYYEILDVPRS--ASADDIKKAYRRKALQWHPDKNP 36 (99)
T ss_dssp CCHHHHSSSCTT--SCHHHHHHHHHHHHHHTSTTTCC
T ss_pred CCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 589999999995 99999999999999999999974
No 20
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=98.64 E-value=6.7e-09 Score=85.07 Aligned_cols=35 Identities=11% Similarity=-0.166 Sum_probs=32.8
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|+|+||||+++ ++.++|||+|||+|++.|||||-
T Consensus 16 ~~~y~vLgv~~~--as~~eIKkaYrkla~~~HPDk~~ 50 (88)
T 1iur_A 16 KEVTSVVEQAWK--LPESERKKIIRRLYLKWHPDKNP 50 (88)
T ss_dssp HHHHHHHHHTTS--SCSHHHHHHHHHHHHHTCTTTSS
T ss_pred HHHHHHhCCCCC--CCHHHHHHHHHHHHHHHCCCCCC
Confidence 578999999995 99999999999999999999974
No 21
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=98.57 E-value=1.8e-08 Score=83.57 Aligned_cols=35 Identities=20% Similarity=0.142 Sum_probs=33.2
Q ss_pred ccchhhcCcCCCCCC-ChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENV-DVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~i-d~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++. + +.++||++||++|++.||||+-
T Consensus 15 ~~~y~iLgv~~~--a~s~~eIk~aYr~l~~~~HPDk~~ 50 (109)
T 2qsa_A 15 ENCYDVLEVNRE--EFDKQKLAKAYRALARKHHPDRVK 50 (109)
T ss_dssp SCHHHHTTCCGG--GCCHHHHHHHHHHHHHHTCGGGCC
T ss_pred CCHHHHcCCCCC--CCCHHHHHHHHHHHHHHHCcCCCC
Confidence 899999999996 7 9999999999999999999974
No 22
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=98.55 E-value=2.3e-08 Score=85.43 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=32.5
Q ss_pred cccchhhcCcCCCCCCCh--HHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDV--SILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~--s~LKKeYRKkALlvHPdk~~ 476 (484)
..|||+||||++. ++. ++|||+|||+|++.||||+-
T Consensus 7 ~~~~Y~iLgv~~~--as~~~~eIk~aYr~la~~~HPDk~~ 44 (114)
T 1gh6_A 7 SLQLMDLLGLERS--AWGNIPLMRKAYLKKCKEFHPDKGG 44 (114)
T ss_dssp HHHHHHHTTCCTT--SCSCHHHHHHHHHHTTTTCCTTTCC
T ss_pred hhhHHHHcCCCCC--CCcCHHHHHHHHHHHHHHHCCCCCc
Confidence 3699999999996 666 99999999999999999973
No 23
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=3.1e-08 Score=86.44 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=33.5
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
-.|||++|||++. ++.++|||+|||++++.||||+-
T Consensus 9 ~~~~y~iLgv~~~--a~~~eIk~aYr~l~~~~HPDk~~ 44 (155)
T 2l6l_A 9 KKDWYSILGADPS--ANISDLKQKYQKLILMYHPDKQS 44 (155)
T ss_dssp CSHHHHHHTCCTT--CCHHHHHHHHHHHHHHHSCCCCC
T ss_pred CCChhHhcCCCCC--CCHHHHHHHHHHHHHHHCcCCCC
Confidence 3799999999995 99999999999999999999974
No 24
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=98.52 E-value=3.1e-08 Score=77.34 Aligned_cols=35 Identities=17% Similarity=0.049 Sum_probs=32.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
.|+|+||||++. +++.++||++||++|+..|||++
T Consensus 14 ~~~y~iLgl~~~-~a~~~eIk~ayr~l~~~~HPDk~ 48 (71)
T 2guz_A 14 KEALQILNLTEN-TLTKKKLKEVHRKIMLANHPDKG 48 (71)
T ss_dssp HHHHHHTTCCTT-TCCHHHHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHcCCCCC-CCCHHHHHHHHHHHHHHHCCCCC
Confidence 489999999983 49999999999999999999995
No 25
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=98.46 E-value=4e-08 Score=90.67 Aligned_cols=44 Identities=20% Similarity=0.337 Sum_probs=37.5
Q ss_pred HHHHHHhcc--------ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 431 DEVVRLLNC--------TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 431 dEV~RIl~c--------~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
++|+.+|.. .|||++|||++. +++++|||+|||+|+++||||+-
T Consensus 100 ~niRaLLssl~~vl~~~~d~Y~vLgv~~~--As~~eIKkAYRklal~~HPDK~~ 151 (182)
T 1n4c_A 100 RNIRALLSTMHTVLWAGETKWKPVGMADL--VTPEQVKKVYRKAVLVVHPDKAT 151 (182)
T ss_dssp TCHHHHHHHGGGGSCTTCCCCCCCCGGGG--SSHHHHHHHHHHHHHHTCGGGGS
T ss_pred HHHHHHHHHHHHHhcCccchhhcCCCCCC--CCHHHHHHHHHHHHHHHCcCcCC
Confidence 445555554 489999999996 99999999999999999999974
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=98.44 E-value=2.3e-08 Score=98.09 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred hccccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 437 LNCTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 437 l~c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+.-.|||++|||+++ ++.++|||+|||+|++.|||||-
T Consensus 25 m~~~d~Y~vLgv~~~--as~~eIk~aYr~la~~~HPDk~~ 62 (329)
T 3lz8_A 25 MELKDYYAILGVQPT--DDLKTIKTAYRRLARKYHPDVSK 62 (329)
T ss_dssp ----------------------------------------
T ss_pred ccccCHHHHcCcCCC--CCHHHHHHHHHHHHHHHCCCCCC
Confidence 344799999999995 99999999999999999999974
No 27
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=98.41 E-value=9.5e-08 Score=88.66 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=34.2
Q ss_pred ccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 440 TDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.|||++|||++.-.+|.++|||+|||+++++||||+-
T Consensus 43 ~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~ 79 (207)
T 3bvo_A 43 RDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFS 79 (207)
T ss_dssp CCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGT
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCC
Confidence 6999999999965689999999999999999999974
No 28
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=98.08 E-value=8.1e-07 Score=91.97 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=21.4
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCcc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCC 475 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~ 475 (484)
+.|||++|||++. ++.++|||+|||+|++.|||||
T Consensus 20 ~~~~y~~lg~~~~--a~~~~i~~ay~~l~~~~hpd~~ 54 (780)
T 3apo_A 20 DQNFYSLLGVSKT--ASSREIRQAFKKLALKLHPDKN 54 (780)
T ss_dssp ---CHHHHTCCTT--CCHHHHHHHHCC----------
T ss_pred CCCHHHHcCCCCC--CCHHHHHHHHHHHHHHHCcCCC
Confidence 4799999999995 9999999999999999999997
No 29
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.0003 Score=55.36 Aligned_cols=36 Identities=3% Similarity=0.023 Sum_probs=30.7
Q ss_pred cchhhcCcCCCC-CCChHHHHHHHhhhhhhcCCCccc
Q 011502 441 DHYSALGLSRFE-NVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 441 D~YevLGv~r~~-~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
+.|.||||++.. .++.++||+.|||+-...||||.-
T Consensus 5 EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGG 41 (65)
T 2guz_B 5 ESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGG 41 (65)
T ss_dssp HHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTC
T ss_pred HHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCC
Confidence 468899999841 279999999999999999999863
No 30
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=96.88 E-value=0.00051 Score=62.60 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=22.6
Q ss_pred CCChHHHHHHHhhhhhhcCCCccc
Q 011502 453 NVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 453 ~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
.+|.++|||+||++|++.||||+-
T Consensus 29 ~a~~~eIk~aYr~la~~~HPDk~~ 52 (181)
T 3uo3_A 29 TIDQSRLRKEYRQLQAQHHPDMAQ 52 (181)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTSCC
T ss_pred CCCHHHHHHHHHHHHHHhCcCCCc
Confidence 699999999999999999999974
No 31
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=96.07 E-value=0.0044 Score=56.30 Aligned_cols=36 Identities=22% Similarity=0.187 Sum_probs=32.7
Q ss_pred cccchhhcCcCCCCCCChHHHHHHHhhhhhhcCCCccc
Q 011502 439 CTDHYSALGLSRFENVDVSILKREYRKKVCCLNHFCCF 476 (484)
Q Consensus 439 c~D~YevLGv~r~~~id~s~LKKeYRKkALlvHPdk~~ 476 (484)
..|+|++||+.+. .+.+++++.|||+++..|||+.-
T Consensus 381 ~~~~y~~lg~~~~--~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 381 KRDYYKILGVKRN--AKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp SCCSGGGSCSSTT--CCTTHHHHHHHHHHHHSCGGGCC
T ss_pred chhHHHHhCCCcc--CCHHHHHHHHHHHHHHhCCCCCC
Confidence 4799999999996 78999999999999999999863
No 32
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=67.52 E-value=2.7 Score=43.18 Aligned_cols=33 Identities=9% Similarity=-0.083 Sum_probs=25.7
Q ss_pred ccchhhcCcCCCCCCCh--HHHHHHHhhhhhhcCCCc
Q 011502 440 TDHYSALGLSRFENVDV--SILKREYRKKVCCLNHFC 474 (484)
Q Consensus 440 ~D~YevLGv~r~~~id~--s~LKKeYRKkALlvHPdk 474 (484)
+|||.+||++.. ... ..|+|+|||+|.+-+++.
T Consensus 629 ~~~~~~lG~~~~--~~~lr~~~~~ayr~la~~~~~~~ 663 (681)
T 2pzi_A 629 ASTNHILGFPFT--SHGLRLGVEASLRSLARVAPTQR 663 (681)
T ss_dssp CSSSEETTEESS--HHHHHHHHHHHHHHHHHHCSSHH
T ss_pred CCCcccCCCCCC--hHHHHHHHHHHHHHHHHhCCChH
Confidence 889999999774 112 459999999999777653
No 33
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=28.19 E-value=43 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.443 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011502 266 MFKFLMVLVVAALVAFFI 283 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~fl 283 (484)
..-.|+...+||+|..|+
T Consensus 6 A~~lLIviav~aaVllyl 23 (26)
T 3j1r_A 6 ATLLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444445555554443
No 34
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.78 E-value=14 Score=35.97 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHH------HHHhhhhhhHHHHHHh
Q 011502 286 ALALVVVALSGTIL------LWLYGSFWTTFFVIFL 315 (484)
Q Consensus 286 tpgllIValfgIvI------LWmYgsFW~T~~liI~ 315 (484)
.|--||.|+||+=+ =|-||++|+.++.+++
T Consensus 314 lP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i 349 (363)
T 2iub_A 314 MPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVI 349 (363)
T ss_dssp HHHHHHTTSCC--------------CHHHHHHHHHH
T ss_pred HHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHH
Confidence 46667778877633 3889988876655433
No 35
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=23.07 E-value=1.1e+02 Score=22.55 Aligned_cols=17 Identities=24% Similarity=0.297 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011502 266 MFKFLMVLVVAALVAFF 282 (484)
Q Consensus 266 ~~y~Ll~lg~Aa~vv~f 282 (484)
+..||.++.++|+|+.-
T Consensus 6 L~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 6 LKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677888777765543
No 36
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=21.71 E-value=66 Score=23.54 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=22.5
Q ss_pred CcCCCCCCChHHHHHHHhhh---------------hhhcCCCccccccccC
Q 011502 447 GLSRFENVDVSILKREYRKK---------------VCCLNHFCCFAYFEHD 482 (484)
Q Consensus 447 Gv~r~~~id~s~LKKeYRKk---------------ALlvHPdk~~~~~~~~ 482 (484)
+|++ .+++++|++.+.+- ...+..+|.|||.|-.
T Consensus 13 nLp~--~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~ 61 (87)
T 2hzc_A 13 NIPF--GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFR 61 (87)
T ss_dssp SCCT--TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEES
T ss_pred CCCC--CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcC
Confidence 5555 37777787766654 2345677889887654
No 37
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=21.62 E-value=81 Score=22.53 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011502 287 LALVVVALSGTILLWLYG 304 (484)
Q Consensus 287 pgllIValfgIvILWmYg 304 (484)
..++|||+| |++.|.+-
T Consensus 10 ~~V~ilg~~-I~i~W~~v 26 (34)
T 3s8f_C 10 AVILVLTLT-ILVFWLGV 26 (34)
T ss_dssp HHHHHHHHH-HHHHHHHH
T ss_pred hHHHHHHHH-HHHHHHHH
Confidence 345555554 66777643
No 38
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.42 E-value=1.1e+02 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.340 Sum_probs=13.7
Q ss_pred HhhhHHHHHHHHHHHHHHHH
Q 011502 283 IGFALALVVVALSGTILLWL 302 (484)
Q Consensus 283 lG~tpgllIValfgIvILWm 302 (484)
+|...|++++||..+++.++
T Consensus 15 ~gvi~gilliGllllliwk~ 34 (79)
T 2knc_B 15 LSVMGAILLIGLAALLIWKL 34 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56666777788877666654
Done!