Query 011505
Match_columns 484
No_of_seqs 199 out of 902
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:06:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011505.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011505hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02405 hexokinase 100.0 2E-127 4E-132 1013.4 47.2 481 1-483 1-495 (497)
2 PLN02596 hexokinase-like 100.0 1E-125 2E-130 996.8 45.1 473 1-479 2-486 (490)
3 PLN02362 hexokinase 100.0 1E-125 3E-130 1001.1 45.7 480 1-483 1-504 (509)
4 PLN02914 hexokinase 100.0 3E-121 7E-126 962.8 48.2 445 34-480 34-490 (490)
5 KOG1369 Hexokinase [Carbohydra 100.0 7E-113 2E-117 885.8 40.1 437 31-483 21-473 (474)
6 PTZ00107 hexokinase; Provision 100.0 2E-108 4E-113 864.9 44.8 417 37-479 7-462 (464)
7 COG5026 Hexokinase [Carbohydra 100.0 1.1E-94 2.5E-99 729.9 38.1 436 33-482 13-464 (466)
8 PF03727 Hexokinase_2: Hexokin 100.0 5.6E-63 1.2E-67 484.6 21.0 241 232-479 1-243 (243)
9 PF00349 Hexokinase_1: Hexokin 100.0 9.1E-51 2E-55 387.6 19.6 190 36-230 2-206 (206)
10 PRK13310 N-acetyl-D-glucosamin 99.9 9E-25 1.9E-29 220.8 25.5 284 96-474 1-300 (303)
11 TIGR00744 ROK_glcA_fam ROK fam 99.9 1.3E-24 2.9E-29 220.7 26.5 293 98-475 1-309 (318)
12 PRK09698 D-allose kinase; Prov 99.9 6.4E-24 1.4E-28 214.4 25.6 275 94-475 3-295 (302)
13 PRK09557 fructokinase; Reviewe 99.9 7E-24 1.5E-28 214.2 25.8 275 96-474 1-299 (301)
14 COG1940 NagC Transcriptional r 99.9 2.6E-23 5.7E-28 211.1 26.2 285 93-476 4-307 (314)
15 PRK05082 N-acetylmannosamine k 99.9 6.3E-23 1.4E-27 206.2 26.0 272 97-474 3-286 (291)
16 PRK00292 glk glucokinase; Prov 99.9 5.4E-21 1.2E-25 194.6 21.4 286 96-474 3-313 (316)
17 PRK12408 glucokinase; Provisio 99.9 2.2E-21 4.8E-26 199.2 18.5 292 90-475 10-332 (336)
18 PRK13311 N-acetyl-D-glucosamin 99.8 5.7E-20 1.2E-24 181.7 20.4 224 96-411 1-246 (256)
19 PRK14101 bifunctional glucokin 99.7 2.8E-17 6.1E-22 182.3 18.4 288 94-475 17-329 (638)
20 PF00480 ROK: ROK family; Int 99.7 1.3E-16 2.8E-21 148.6 12.0 167 99-311 1-179 (179)
21 TIGR00749 glk glucokinase, pro 99.7 6.1E-16 1.3E-20 157.6 17.1 293 98-471 1-316 (316)
22 PTZ00288 glucokinase 1; Provis 99.5 5.1E-12 1.1E-16 132.3 25.3 328 59-478 5-392 (405)
23 KOG1794 N-Acetylglucosamine ki 99.3 8.7E-10 1.9E-14 108.0 24.5 316 94-478 2-318 (336)
24 PF01869 BcrAD_BadFG: BadF/Bad 99.2 2.2E-09 4.8E-14 106.9 22.7 271 98-474 1-271 (271)
25 TIGR02707 butyr_kinase butyrat 98.9 1.2E-07 2.5E-12 98.1 20.5 276 96-464 1-330 (351)
26 PF02685 Glucokinase: Glucokin 98.8 8.7E-07 1.9E-11 90.4 22.6 288 98-475 1-314 (316)
27 PRK03011 butyrate kinase; Prov 98.5 7.3E-06 1.6E-10 85.1 20.0 284 96-471 3-342 (358)
28 smart00732 YqgFc Likely ribonu 98.5 3E-07 6.6E-12 77.1 7.0 98 96-225 2-99 (99)
29 COG2971 Predicted N-acetylgluc 98.5 4.6E-05 1E-09 76.2 23.2 278 94-475 4-290 (301)
30 TIGR01314 gntK_FGGY gluconate 97.7 0.0082 1.8E-07 65.3 24.3 60 96-158 1-63 (505)
31 COG0837 Glk Glucokinase [Carbo 97.6 0.019 4.1E-07 57.6 22.5 182 95-318 6-206 (320)
32 COG1070 XylB Sugar (pentulose 97.5 0.025 5.4E-07 61.6 23.8 62 95-158 4-68 (502)
33 COG1069 AraB Ribulose kinase [ 97.5 0.065 1.4E-06 57.8 25.5 75 390-478 406-480 (544)
34 TIGR01312 XylB D-xylulose kina 97.3 0.074 1.6E-06 57.2 24.7 76 98-180 1-81 (481)
35 PRK00976 hypothetical protein; 97.1 0.002 4.3E-08 65.7 8.9 79 380-476 233-311 (326)
36 PRK13318 pantothenate kinase; 96.9 0.011 2.4E-07 58.7 11.8 122 97-250 2-142 (258)
37 PF00370 FGGY_N: FGGY family o 96.9 0.0038 8.3E-08 61.1 8.4 61 96-159 1-64 (245)
38 TIGR00241 CoA_E_activ CoA-subs 96.4 0.22 4.7E-06 49.1 17.0 94 96-235 1-94 (248)
39 TIGR03286 methan_mark_15 putat 96.0 0.53 1.1E-05 49.6 18.0 24 90-113 139-162 (404)
40 TIGR01311 glycerol_kin glycero 95.7 0.028 6.1E-07 60.9 7.7 73 96-175 2-77 (493)
41 TIGR01315 5C_CHO_kinase FGGY-f 95.6 0.033 7.1E-07 61.3 8.1 73 97-176 2-77 (541)
42 PTZ00186 heat shock 70 kDa pre 95.6 0.74 1.6E-05 51.9 18.8 82 380-478 322-403 (657)
43 PRK00047 glpK glycerol kinase; 95.4 0.043 9.3E-07 59.6 7.7 73 96-175 6-81 (498)
44 PRK10939 autoinducer-2 (AI-2) 95.3 0.047 1E-06 59.7 7.9 61 96-159 4-69 (520)
45 PRK13317 pantothenate kinase; 95.2 3.9 8.4E-05 41.2 20.8 49 422-475 224-273 (277)
46 PRK13321 pantothenate kinase; 95.2 0.2 4.3E-06 49.7 11.3 47 97-152 2-48 (256)
47 TIGR01234 L-ribulokinase L-rib 95.2 0.05 1.1E-06 59.7 7.7 61 96-159 2-77 (536)
48 PRK13410 molecular chaperone D 95.2 1.1 2.5E-05 50.6 18.5 82 380-478 297-378 (668)
49 PTZ00009 heat shock 70 kDa pro 95.2 0.54 1.2E-05 53.0 15.9 84 380-479 301-384 (653)
50 PRK15027 xylulokinase; Provisi 95.1 0.062 1.3E-06 58.1 8.1 71 96-175 1-74 (484)
51 PRK10331 L-fuculokinase; Provi 94.7 0.094 2E-06 56.5 8.0 60 96-158 3-67 (470)
52 COG1924 Activator of 2-hydroxy 94.4 3.9 8.5E-05 42.6 18.2 101 91-234 131-231 (396)
53 PF00012 HSP70: Hsp70 protein; 94.3 0.35 7.6E-06 53.5 11.5 82 380-479 297-379 (602)
54 PTZ00294 glycerol kinase-like 94.2 0.13 2.9E-06 55.9 7.8 61 96-159 3-66 (504)
55 TIGR02628 fuculo_kin_coli L-fu 94.1 0.14 3.1E-06 55.0 7.7 59 96-157 2-65 (465)
56 PRK04123 ribulokinase; Provisi 94.0 0.17 3.6E-06 55.7 8.1 61 96-159 4-74 (548)
57 PLN03184 chloroplast Hsp70; Pr 93.9 3.3 7.2E-05 46.9 18.4 82 380-478 334-415 (673)
58 PLN02295 glycerol kinase 93.5 0.18 4E-06 54.9 7.4 62 96-160 1-65 (512)
59 TIGR02350 prok_dnaK chaperone 92.9 2.9 6.4E-05 46.5 15.8 82 380-478 293-374 (595)
60 TIGR01991 HscA Fe-S protein as 92.3 5.2 0.00011 44.7 16.6 82 380-478 281-362 (599)
61 PF02782 FGGY_C: FGGY family o 91.7 1.3 2.8E-05 41.4 9.6 76 385-477 122-197 (198)
62 PF07318 DUF1464: Protein of u 90.8 21 0.00045 37.1 17.7 49 422-475 262-314 (343)
63 TIGR01175 pilM type IV pilus a 90.4 7.7 0.00017 39.8 14.8 62 96-159 4-65 (348)
64 TIGR01174 ftsA cell division p 89.8 14 0.0003 38.5 16.1 57 191-249 155-214 (371)
65 COG0443 DnaK Molecular chapero 89.7 8.6 0.00019 42.8 15.1 83 380-479 278-360 (579)
66 PLN02669 xylulokinase 89.6 1.2 2.6E-05 49.3 8.3 63 87-155 3-81 (556)
67 COG0554 GlpK Glycerol kinase [ 88.0 0.99 2.1E-05 48.3 6.0 77 94-175 4-81 (499)
68 PRK15080 ethanolamine utilizat 87.3 8.9 0.00019 38.2 12.2 134 89-249 18-153 (267)
69 TIGR02627 rhamnulo_kin rhamnul 86.2 1.3 2.8E-05 47.6 5.8 59 98-156 1-63 (454)
70 KOG2517 Ribulose kinase and re 84.5 4.8 0.0001 43.8 9.1 81 94-183 5-89 (516)
71 COG4972 PilM Tfp pilus assembl 84.3 5 0.00011 41.2 8.5 115 96-212 11-167 (354)
72 PTZ00400 DnaK-type molecular c 83.9 6 0.00013 44.8 10.0 82 380-478 336-417 (663)
73 PRK05183 hscA chaperone protei 83.2 5.3 0.00012 44.8 9.2 83 380-479 297-379 (616)
74 PRK00290 dnaK molecular chaper 78.7 8.2 0.00018 43.3 8.8 82 380-478 295-376 (627)
75 PF03702 UPF0075: Uncharacteri 78.5 31 0.00067 36.2 12.3 257 107-446 15-309 (364)
76 PRK13324 pantothenate kinase; 77.8 14 0.0003 36.8 9.1 46 97-151 2-48 (258)
77 TIGR00671 baf pantothenate kin 76.9 39 0.00085 33.2 12.0 45 98-151 2-46 (243)
78 PRK09472 ftsA cell division pr 76.7 95 0.0021 33.0 15.8 57 191-249 163-222 (420)
79 CHL00094 dnaK heat shock prote 76.3 15 0.00032 41.3 9.9 82 380-478 297-378 (621)
80 smart00842 FtsA Cell division 74.2 27 0.00059 32.5 9.7 57 97-158 1-59 (187)
81 COG5146 PanK Pantothenate kina 74.2 9.4 0.0002 37.5 6.5 74 213-292 122-199 (342)
82 PRK13411 molecular chaperone D 67.7 22 0.00048 40.2 8.8 83 380-478 296-378 (653)
83 PF11104 PilM_2: Type IV pilus 66.3 24 0.00052 36.3 8.1 111 99-211 1-153 (340)
84 TIGR02529 EutJ ethanolamine ut 65.8 81 0.0018 30.8 11.4 125 99-249 1-126 (239)
85 PRK10939 autoinducer-2 (AI-2) 64.3 32 0.00069 37.6 9.0 77 385-478 382-458 (520)
86 PRK01433 hscA chaperone protei 64.2 43 0.00092 37.5 10.1 80 380-478 279-358 (595)
87 PTZ00294 glycerol kinase-like 62.6 35 0.00075 37.1 8.9 77 385-478 379-455 (504)
88 PRK10854 exopolyphosphatase; P 60.4 54 0.0012 35.9 9.9 62 96-157 12-75 (513)
89 PRK13929 rod-share determining 60.1 1.6E+02 0.0034 30.2 12.8 50 197-248 115-167 (335)
90 PRK13928 rod shape-determining 59.7 89 0.0019 31.9 10.9 53 195-249 110-165 (336)
91 TIGR00555 panK_eukar pantothen 58.7 20 0.00043 36.2 5.6 47 422-472 232-278 (279)
92 TIGR00904 mreB cell shape dete 58.4 2E+02 0.0043 29.3 13.2 46 196-243 114-161 (333)
93 TIGR03192 benz_CoA_bzdQ benzoy 58.1 28 0.00061 35.3 6.6 69 381-475 217-287 (293)
94 PRK11031 guanosine pentaphosph 56.6 58 0.0013 35.5 9.3 62 96-157 7-70 (496)
95 PRK00047 glpK glycerol kinase; 56.3 47 0.001 36.0 8.6 77 385-478 376-452 (498)
96 PF05378 Hydant_A_N: Hydantoin 55.4 35 0.00075 31.9 6.4 50 98-159 2-51 (176)
97 PRK04123 ribulokinase; Provisi 55.0 45 0.00098 36.7 8.2 77 385-478 412-488 (548)
98 TIGR01311 glycerol_kin glycero 54.8 52 0.0011 35.7 8.6 77 385-478 372-448 (493)
99 PRK13930 rod shape-determining 54.5 2.1E+02 0.0046 28.9 12.6 47 195-243 115-163 (335)
100 PRK03657 hypothetical protein; 53.6 39 0.00084 31.6 6.3 68 47-116 70-145 (170)
101 PRK13326 pantothenate kinase; 53.5 28 0.0006 34.8 5.7 45 96-149 7-51 (262)
102 PRK10331 L-fuculokinase; Provi 51.5 63 0.0014 34.7 8.5 76 386-478 363-438 (470)
103 TIGR03706 exo_poly_only exopol 51.3 80 0.0017 31.9 8.8 61 97-157 2-64 (300)
104 COG3426 Butyrate kinase [Energ 51.2 1.8E+02 0.0039 29.6 10.7 60 380-448 264-323 (358)
105 TIGR02261 benz_CoA_red_D benzo 50.8 80 0.0017 31.6 8.4 73 380-474 187-262 (262)
106 PRK13320 pantothenate kinase; 46.7 45 0.00097 32.9 5.9 18 96-113 3-20 (244)
107 PRK00109 Holliday junction res 46.3 1.6E+02 0.0035 26.3 8.9 23 94-116 3-25 (138)
108 TIGR01234 L-ribulokinase L-rib 45.8 96 0.0021 34.0 9.0 49 422-478 437-485 (536)
109 PF11215 DUF3010: Protein of u 44.8 57 0.0012 29.4 5.6 62 96-161 2-63 (138)
110 TIGR02259 benz_CoA_red_A benzo 44.2 47 0.001 35.3 5.8 49 381-446 358-406 (432)
111 PRK15027 xylulokinase; Provisi 43.9 1.1E+02 0.0025 32.9 9.1 37 206-243 220-257 (484)
112 TIGR02628 fuculo_kin_coli L-fu 42.5 1.1E+02 0.0024 32.8 8.7 77 385-478 366-442 (465)
113 PLN02295 glycerol kinase 42.2 1E+02 0.0023 33.5 8.5 47 423-478 415-461 (512)
114 TIGR02259 benz_CoA_red_A benzo 41.0 31 0.00067 36.6 3.9 22 95-116 2-23 (432)
115 KOG2517 Ribulose kinase and re 39.9 93 0.002 34.2 7.4 50 422-480 416-465 (516)
116 PRK10640 rhaB rhamnulokinase; 39.6 1.3E+02 0.0029 32.4 8.7 76 385-478 348-423 (471)
117 COG0816 Predicted endonuclease 37.3 1.1E+02 0.0023 27.8 6.3 22 95-116 2-23 (141)
118 PRK05571 ribose-5-phosphate is 36.6 15 0.00031 33.6 0.6 60 191-250 10-77 (148)
119 TIGR02627 rhamnulo_kin rhamnul 36.6 1.6E+02 0.0034 31.6 8.7 77 385-479 360-436 (454)
120 COG3734 DgoK 2-keto-3-deoxy-ga 36.2 32 0.00068 34.8 3.0 24 94-117 4-27 (306)
121 PRK08621 galactose-6-phosphate 36.1 21 0.00046 32.3 1.6 59 191-250 10-74 (142)
122 TIGR01315 5C_CHO_kinase FGGY-f 36.1 1.7E+02 0.0036 32.2 9.0 76 385-478 417-492 (541)
123 COG4619 ABC-type uncharacteriz 36.0 3.9E+02 0.0085 25.4 10.1 127 294-451 54-182 (223)
124 cd00529 RuvC_resolvase Hollida 35.8 1.7E+02 0.0037 26.5 7.6 59 96-159 1-59 (154)
125 TIGR01118 lacA galactose-6-pho 34.5 23 0.00049 32.1 1.5 59 191-250 10-74 (141)
126 COG0248 GppA Exopolyphosphatas 34.4 1.3E+02 0.0029 32.8 7.7 117 96-227 4-122 (492)
127 PF14574 DUF4445: Domain of un 33.6 1.2E+02 0.0027 32.3 7.1 67 397-475 309-376 (412)
128 COG1521 Pantothenate kinase ty 32.9 90 0.002 31.0 5.6 44 97-149 2-45 (251)
129 TIGR00143 hypF [NiFe] hydrogen 32.9 1.3E+02 0.0028 34.6 7.5 48 422-475 660-711 (711)
130 TIGR03192 benz_CoA_bzdQ benzoy 31.8 2E+02 0.0043 29.3 7.9 19 95-113 32-50 (293)
131 PF13941 MutL: MutL protein 30.7 5.2E+02 0.011 28.1 11.2 55 96-157 1-55 (457)
132 PF02075 RuvC: Crossover junct 30.6 2.2E+02 0.0047 25.7 7.3 59 97-160 1-59 (149)
133 PF05402 PqqD: Coenzyme PQQ sy 30.5 1.2E+02 0.0026 23.0 4.9 35 34-68 29-63 (68)
134 TIGR03123 one_C_unchar_1 proba 29.8 77 0.0017 32.6 4.6 45 366-411 234-278 (318)
135 PF03309 Pan_kinase: Type III 29.1 1.1E+02 0.0025 28.9 5.5 19 97-115 1-19 (206)
136 TIGR02261 benz_CoA_red_D benzo 29.0 2.1E+02 0.0046 28.6 7.5 21 96-116 2-22 (262)
137 PLN02669 xylulokinase 28.1 2.1E+02 0.0045 31.7 8.0 38 206-244 267-306 (556)
138 PRK10753 transcriptional regul 27.0 1.5E+02 0.0032 24.4 5.1 35 39-73 5-39 (90)
139 TIGR00555 panK_eukar pantothen 27.0 2.5E+02 0.0054 28.3 7.7 42 97-150 2-43 (279)
140 COG1546 CinA Uncharacterized p 26.4 2.4E+02 0.0053 26.1 6.8 68 48-117 65-140 (162)
141 PTZ00340 O-sialoglycoprotein e 26.4 4.4E+02 0.0096 27.5 9.5 134 96-248 2-140 (345)
142 TIGR03123 one_C_unchar_1 proba 26.3 45 0.00098 34.3 2.2 22 93-114 126-147 (318)
143 TIGR00987 himA integration hos 26.0 1.5E+02 0.0033 24.5 5.1 36 38-73 5-40 (96)
144 PRK03661 hypothetical protein; 25.7 2.1E+02 0.0046 26.4 6.4 56 48-104 65-128 (164)
145 PRK00285 ihfA integration host 25.7 1.5E+02 0.0033 24.5 5.1 37 37-73 5-41 (99)
146 PRK00180 acetate kinase A/prop 25.3 7.7E+02 0.017 26.3 11.2 46 389-446 304-349 (402)
147 TIGR00199 cinA_cterm competenc 25.1 2.8E+02 0.006 25.1 6.9 54 48-102 53-114 (146)
148 PF03652 UPF0081: Uncharacteri 25.1 3.3E+02 0.0072 24.1 7.4 101 96-227 2-104 (135)
149 KOG0162 Myosin class I heavy c 24.6 37 0.00079 38.5 1.3 36 140-181 359-396 (1106)
150 PF00022 Actin: Actin; InterP 23.3 1.2E+02 0.0026 31.4 4.9 51 424-477 314-368 (393)
151 smart00411 BHL bacterial (prok 23.3 1.9E+02 0.0041 23.2 5.1 36 38-73 4-39 (90)
152 PF01968 Hydantoinase_A: Hydan 23.3 76 0.0016 32.0 3.2 20 96-116 78-97 (290)
153 COG0145 HyuA N-methylhydantoin 23.2 62 0.0013 36.8 2.8 61 54-114 210-297 (674)
154 TIGR02133 RPI_actino ribose 5- 23.0 60 0.0013 29.6 2.2 60 191-250 10-77 (148)
155 PRK12440 acetate kinase; Revie 22.7 4.8E+02 0.01 27.8 9.0 48 388-448 301-348 (397)
156 TIGR01119 lacB galactose-6-pho 22.0 59 0.0013 30.4 2.0 59 191-249 10-75 (171)
157 COG3894 Uncharacterized metal- 21.8 1E+02 0.0022 33.8 3.8 30 88-117 157-186 (614)
158 COG0698 RpiB Ribose 5-phosphat 21.7 72 0.0016 29.2 2.4 59 191-249 10-76 (151)
159 PRK13411 molecular chaperone D 21.7 2.1E+02 0.0046 32.4 6.7 25 93-117 184-208 (653)
160 PF00216 Bac_DNA_binding: Bact 21.7 1.9E+02 0.0042 23.1 4.8 36 38-73 4-39 (90)
161 TIGR00250 RNAse_H_YqgF RNAse H 21.1 4E+02 0.0086 23.5 7.0 17 98-114 1-17 (130)
162 PF01548 DEDD_Tnp_IS110: Trans 20.9 1.6E+02 0.0034 25.8 4.5 44 97-149 1-44 (144)
163 PRK00039 ruvC Holliday junctio 20.9 4.4E+02 0.0095 24.3 7.5 22 96-117 3-24 (164)
164 COG4071 Uncharacterized protei 20.5 1E+02 0.0022 29.8 3.2 52 194-245 144-197 (278)
No 1
>PLN02405 hexokinase
Probab=100.00 E-value=1.6e-127 Score=1013.45 Aligned_cols=481 Identities=78% Similarity=1.195 Sum_probs=442.3
Q ss_pred CCceeE--eeeehhhhccceeeeeEeecccccCCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011505 1 MGRVTV--VVVCCAALAAGVAAAVVVCRRVKRGGKCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKL 78 (484)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l 78 (484)
|+|+++ +++|+++ +|++++..+++|+++..+|.++.+++++|+++|.+|.++|++|+++|..||++||+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (497)
T PLN02405 1 MGKVAVGAAVVCAAA--VCAAAALVVRRRMKSSGKWARAMEILKEFEEDCATPIGKLRQVADAMTVEMHAGLASEGGSKL 78 (497)
T ss_pred CCceeeehhhhhHHH--HHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCc
Confidence 788555 3333333 577777888888877778889999999999999999999999999999999999998767899
Q ss_pred ceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhc
Q 011505 79 KMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 79 ~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
+||||||+++|+|+|+|.|||||||||||||++|+|.|++..++.+++++++||+++|.+++++||||||+||.+|++++
T Consensus 79 ~MlpSyv~~lPtG~E~G~flAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~ip~~~~~gt~~~LFdfIA~~i~~fl~~~ 158 (497)
T PLN02405 79 KMLISYVDNLPSGDEKGLFYALDLGGTNFRVLRVLLGGKDGRVVKQEFEEVSIPPHLMTGSSDALFDFIAAALAKFVATE 158 (497)
T ss_pred ceeccccccCCCCCcceeEEEEecCCceEEEEEEEEcCCCCceeEEEEEEeecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998766666667778999999999999999999999999999988
Q ss_pred ccccccCCCCceeeeeeeeeeeeeeecCceEE------------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcc
Q 011505 159 SEEFKLSPGRQRELGFTFSFPVMQTSINTGTL------------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGG 226 (484)
Q Consensus 159 ~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l------------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~ 226 (484)
+.+..+.+++.++|||||||||+|+++++|+| +|+||+++|++||+|+|+||+|+||+|||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Qtsi~~g~Li~WTKGF~~~~~vG~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~ 238 (497)
T PLN02405 159 GEDFHLPPGRQRELGFTFSFPVKQTSISSGTLIKWTKGFSIDDAVGQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGG 238 (497)
T ss_pred ccccccCcccccccceeEeeeeccCCCCceEEEEeccccccCCccCchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHh
Confidence 75433334467999999999999999999999 999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeecc
Q 011505 227 RYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMI 306 (484)
Q Consensus 227 ~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~ 306 (484)
+|.+++|.||+|+|||||+||+|+.++|+||++..+..++|+||||||+|+++++|+|+||++||++|.|||+|+||||+
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (497)
T PLN02405 239 RYYNPDVVAAVILGTGTNAAYVERAQAIPKWHGLLPKSGEMVINMEWGNFRSSHLPLTEYDHALDVESLNPGEQIFEKII 318 (497)
T ss_pred hcCCCCceEEEEEeCCeeeEEEeecccCccccccCCCCCeEEEEeccccCCCCCCCCchHHHHHhhcCCCCCcchhhHHH
Confidence 99999999999999999999999999999998766677899999999999988999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011505 307 SGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVEL 386 (484)
Q Consensus 307 SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i 386 (484)
||||||||+|++|+++++++.||++..|+.|.+||+|+|++||.|+.|+++++..+.++|.+.|+++..+.+|++.+++|
T Consensus 319 SG~YLGEivRlvLl~l~~~~~lF~g~~~~~L~~~~~l~T~~ls~i~~D~s~~l~~~~~~l~~~l~~~~~~~~~~~~vr~i 398 (497)
T PLN02405 319 SGMYLGEILRRVLLKMAEEAAFFGDTVPPKLKIPFILRTPDMSAMHHDTSPDLKVVGSKLKDILEIPNTSLKMRKVVVEL 398 (497)
T ss_pred hhccHHHHHHHHHHHHHHhccccCCCCcHhhcCCCCcccHHHHHHhcCCCchHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChh
Q 011505 387 CNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGS 466 (484)
Q Consensus 387 ~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs 466 (484)
|++|.+|||||+|++|+||++++++........++.+||||||+|+|||.|+++++++++++++++..++|++++++|||
T Consensus 399 ~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~v~l~~a~DGS 478 (497)
T PLN02405 399 CNIVATRGARLSAAGIYGILKKLGRDTVKDGEKQKSVIAMDGGLFEHYTEFSKCMESTLKELLGEEVSESIEVEHSNDGS 478 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcceEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCceEEEEEecCch
Confidence 99999999999999999999999874321112246899999999999999999999999999988777789999999999
Q ss_pred HHHHHHHHHHhcccccC
Q 011505 467 GIGAALLAASHSKYLQD 483 (484)
Q Consensus 467 ~iGAAl~Aa~~~~~~~~ 483 (484)
|+|||++||+++++.|-
T Consensus 479 GvGAAl~AA~~~~~~~~ 495 (497)
T PLN02405 479 GIGAALLAASHSLYLEV 495 (497)
T ss_pred HHHHHHHHHHHhhhhcc
Confidence 99999999999988654
No 2
>PLN02596 hexokinase-like
Probab=100.00 E-value=1.1e-125 Score=996.77 Aligned_cols=473 Identities=52% Similarity=0.869 Sum_probs=434.7
Q ss_pred CCceeEeeeehhhhccceeeeeEeeccc-ccCCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcc
Q 011505 1 MGRVTVVVVCCAALAAGVAAAVVVCRRV-KRGGKCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLK 79 (484)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~ 79 (484)
|+|++++++.+.+++||+++ ++++||. +++.+|+++++++++|+++|.+|.++|++|+++|.+||++||+++.+|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~ 80 (490)
T PLN02596 2 MRKEVVVAATVATVAAVAAA-VLMGRWKRRKERQWKHTQRILRKFARECATPVSKLWEVADALVSDMTASLTAEETTTLN 80 (490)
T ss_pred CcceeeehhHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCCc
Confidence 78866623222222357777 7777776 666799999999999999999999999999999999999999886668999
Q ss_pred eeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 80 MIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 80 Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
||||||+++|||+|+|.|||||||||||||++|+|.|++..+.+...++|+||++++.+++++||||||+||.+|+++++
T Consensus 81 MlpTyv~~lPtG~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA~~i~~fl~~~~ 160 (490)
T PLN02596 81 MLVSYVASLPSGDEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIALELAKFVAEHP 160 (490)
T ss_pred eecccCCCCCCCCcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999887555566666779999999999999999999999999999876
Q ss_pred cccccCCCCceeeeeeeeeeeeeeecCceEE-----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc
Q 011505 160 EEFKLSPGRQRELGFTFSFPVMQTSINTGTL-----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRY 228 (484)
Q Consensus 160 ~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l-----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y 228 (484)
.+...+.++.++||||||||++|+++++|+| +|+||+++|+++++|+|+||+|+||+|||||||++++|
T Consensus 161 ~~~~~~~~~~l~lGfTFSFP~~Q~si~~G~Li~WKgF~~~~~vG~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY 240 (490)
T PLN02596 161 GDEADTPERVKKLGFTVSYPVDQAAASSGSAIKWKSFSADDTVGKALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRY 240 (490)
T ss_pred cccccCcccccccceEEeeeeeecCCCCEEEEEeccccCCCccCcHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhc
Confidence 5433223457999999999999999999999 89999999999999999999999999999999999999
Q ss_pred cCCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeecccc
Q 011505 229 TNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISG 308 (484)
Q Consensus 229 ~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG 308 (484)
.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|++.++|+|+||++||++|.|||+|+||||+||
T Consensus 241 ~~~~~~iG~I~GTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKMiSG 320 (490)
T PLN02596 241 YNKDTVAAVTLGMGTNAAYVEPAQAIPKWQSPSPESQEIVISTEWGNFNSCHLPITEFDASLDAESSNPGSRIFEKLTSG 320 (490)
T ss_pred CCCCeEEEEEEecccceEEEEEccccccccCCCCCCCeEEEEeccccCCCCCCCCChHHHHHhccCCCCCcchHHHHHhh
Confidence 99999999999999999999999999999876667789999999999998889999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011505 309 MYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCN 388 (484)
Q Consensus 309 ~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~ 388 (484)
||||||+|++|+++++++.||++..|+.|.+||+|+|++||.++.|+++++..+.++|.+.|+++.++.+|++.+++||+
T Consensus 321 ~YLGElvRlvl~~l~~~~~lF~~~~~~~L~~~~~l~T~~lS~i~~d~s~~~~~~~~~l~~~l~~~~~~~~d~~~lr~i~~ 400 (490)
T PLN02596 321 MYLGEIVRRVLLKMAEETALFGDTLPPKLTTPYLLRSPDMAAMHQDTSEDHEVVNEKLKEIFGITDSTPMAREVVAEVCD 400 (490)
T ss_pred hhHHHHHHHHHHHHHHhccccCCCCcHhhcCCCccccHHHHHHhcCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHH
Q 011505 389 IVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGI 468 (484)
Q Consensus 389 ~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~i 468 (484)
+|.+|||||+|++|+||++++++. ..++++||||||+|++||.|+++|+++++++++++...+|++.+++||||+
T Consensus 401 ~V~~RAArL~Aa~iaail~k~g~~-----~~~~~~VavDGSvye~~p~f~~~l~~al~ellg~~~~~~i~~~~s~DGSG~ 475 (490)
T PLN02596 401 IVAERGARLAGAGIVGIIKKLGRI-----ENKKSVVTVEGGLYEHYRVFRNYLHSSVWEMLGSELSDNVVIEHSHGGSGA 475 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-----CCCceEEEEeCcceeeCcCHHHHHHHHHHHHhCcccCCcEEEEEccCchhH
Confidence 999999999999999999999862 235689999999999999999999999999999877789999999999999
Q ss_pred HHHHHHHHhcc
Q 011505 469 GAALLAASHSK 479 (484)
Q Consensus 469 GAAl~Aa~~~~ 479 (484)
|||++||+++.
T Consensus 476 GAAl~AA~~~~ 486 (490)
T PLN02596 476 GALFLAACQTG 486 (490)
T ss_pred HHHHHHHhhcc
Confidence 99999999884
No 3
>PLN02362 hexokinase
Probab=100.00 E-value=1.4e-125 Score=1001.13 Aligned_cols=480 Identities=56% Similarity=0.912 Sum_probs=438.3
Q ss_pred CCceeE--eeeehhhhccceeeeeEeecccccCCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 011505 1 MGRVTV--VVVCCAALAAGVAAAVVVCRRVKRGGKCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKL 78 (484)
Q Consensus 1 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l 78 (484)
|+|+.+ +++|+++ +|++++..+++|++...+|+++.+++++|+++|.+|.++|++|+++|.+||++||+++++|++
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~~~~L~~v~~~f~~em~~GL~~~~~s~l 78 (509)
T PLN02362 1 MGKVAVGLAAAAAVA--ACAVAAVMVGRRVKSRRKWRRVVGVLKELEEACETPVGRLRQVVDAMAVEMHAGLASEGGSKL 78 (509)
T ss_pred CCceeeehhhhHHHH--HHHHHHHhhhcccccchhhhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 788555 3333333 466777788888877778889999999999999999999999999999999999998766899
Q ss_pred ceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhc
Q 011505 79 KMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 79 ~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
+||||||+++|+|+|+|.|||||||||||||++|+|.|++..++.+++++++||+++|.+++++||||||+||.+|++++
T Consensus 79 ~MlPTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~~~~eLFd~IA~~i~~fl~~~ 158 (509)
T PLN02362 79 KMLLTFVDDLPTGSEIGTYYALDLGGTNFRVLRVQLGGQRSSILSQDVERHPIPQHLMNSTSEVLFDFIASSLKQFVEKE 158 (509)
T ss_pred ceecCccCCCCCCCcceeEEEEecCCceEEEEEEEecCCCcceeeceeEEEecChhhccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998766565555567999999999999999999999999999988
Q ss_pred ccccccCCCCceeeeeeeeeeeeeeecCceEE------------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcc
Q 011505 159 SEEFKLSPGRQRELGFTFSFPVMQTSINTGTL------------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGG 226 (484)
Q Consensus 159 ~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l------------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~ 226 (484)
+.+.+++..+.++||||||||++|+++++|+| +|+||+++|+++|+|+++||+|+||+|||||||+++
T Consensus 159 ~~~~~~~~~~~l~LGfTFSFPv~Q~si~~g~Li~WtKGF~~~~v~G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~ 238 (509)
T PLN02362 159 ENGSEFSQVRRRELGFTFSFPVKQTSISSGILIKWTKGFAISDMVGKDVAECLQGALNRRGLDMRVAALVNDTVGTLALG 238 (509)
T ss_pred CccccccccccccceeEEeeeeccCCCCceEEEEeccccccCcccCchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhh
Confidence 65432223457999999999999999999999 899999999999999999999999999999999999
Q ss_pred cccCCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeecc
Q 011505 227 RYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMI 306 (484)
Q Consensus 227 ~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~ 306 (484)
+|.+++|.||+|+|||||+||+|+.++|+|+++..+..++|+||||||+|+++++|+|+||++||.+|.|||+|+||||+
T Consensus 239 aY~~~~~~iG~IlGTGtNacY~E~~~~i~k~~~~~~~~~~miINtEwG~F~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmi 318 (509)
T PLN02362 239 HYHDPDTVAAVIIGTGTNACYLERTDAIIKCQGLLTTSGSMVVNMEWGNFWSSHLPRTSYDIDLDAESPNPNDQGFEKMI 318 (509)
T ss_pred hcCCCCceEEEEEECCccceEeeehhhcccccccCCCCCcEEEEeeccCCCCCCCCCchHHHHHhcCCCCcCcchHHHHH
Confidence 99999999999999999999999999999998766677899999999999988999999999999999999999999999
Q ss_pred ccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011505 307 SGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVEL 386 (484)
Q Consensus 307 SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i 386 (484)
||||||||+|++|+++++++.||++ .|++|.+||+|+|++||.|+.|+++++..+..+|++.|+++..+.+|++.+++|
T Consensus 319 SG~YLGEivRlvL~~l~~~~~lF~~-~~~~L~~~~~l~T~~ls~i~~d~s~~l~~~~~~l~~~~~~~~~~~~~~~~v~~i 397 (509)
T PLN02362 319 SGMYLGDIVRRVILRMSQESDIFGP-VSSRLSTPFVLRTPSVAAMHEDDSPELQEVARILKETLGISEVPLKVRKLVVKI 397 (509)
T ss_pred hhccHHHHHHHHHHHHHhccccccC-CcHhhcCCCccccHHHHHHhcCCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999974 788999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcCC----------CCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCcc
Q 011505 387 CNIVATRGARLAAAGILGVLKKMGRDAAKD----------GDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKN 456 (484)
Q Consensus 387 ~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~----------~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~ 456 (484)
|++|.+|||||+|++|+||++++++..... .+.++.+||||||+|+|||.|+++++++++++++++...+
T Consensus 398 ~~~V~~RaArL~Aa~iaail~k~~~~~~~~~~~~~~~~~~~~~~~~~VavDGsvye~yp~f~~~~~~~l~ell~~~~~~~ 477 (509)
T PLN02362 398 CDVVTRRAARLAAAGIVGILKKIGRDGSGGITSGRSRSDIQIMRRTVVAVEGGLYTNYTMFREYLHEALNEILGEDVAQH 477 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccCCCceEEEEEeCchhhcCcCHHHHHHHHHHHHhCcccCce
Confidence 999999999999999999999998532100 0124589999999999999999999999999998877789
Q ss_pred EEEEEcCChhHHHHHHHHHHhcccccC
Q 011505 457 IVIEHSNDGSGIGAALLAASHSKYLQD 483 (484)
Q Consensus 457 v~i~~~~Dgs~iGAAl~Aa~~~~~~~~ 483 (484)
|+|++++||||+|||++||++++|.||
T Consensus 478 v~i~~a~DGSgvGAAl~AA~~~~~~~~ 504 (509)
T PLN02362 478 VILKATEDGSGIGSALLAASYSSYSVD 504 (509)
T ss_pred EEEEEccCchHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999776
No 4
>PLN02914 hexokinase
Probab=100.00 E-value=3.3e-121 Score=962.75 Aligned_cols=445 Identities=59% Similarity=0.967 Sum_probs=414.1
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEE
Q 011505 34 CGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVH 113 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~ 113 (484)
..++.+++++|+++|.+|.++|++|+++|.+||++||+++++|+++||||||.++|+|+|+|.|||||||||||||++|+
T Consensus 34 ~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~s~l~MlpTyv~~lPtG~E~G~fLAlDlGGTNfRV~~V~ 113 (490)
T PLN02914 34 AVSVAPILTKLQKDCATPLPVLRHVADAMAADMRAGLAVDGGGDLKMILSYVDSLPSGNEKGLFYALDLGGTNFRVLRVQ 113 (490)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccCCCCCcceeccccCCCCCCCeeeEEEEEecCCceEEEEEEE
Confidence 34788999999999999999999999999999999999876689999999999999999999999999999999999999
Q ss_pred eCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE---
Q 011505 114 LGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL--- 190 (484)
Q Consensus 114 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l--- 190 (484)
|.|++..+....+++++||.+++.+++++||||||+||.+|++++..++.++.++.++||||||||++|+++++|+|
T Consensus 114 L~g~~~~~~~~~~~~~~ip~~l~~gt~~eLFdfIA~~i~~fl~~~~~~~~~~~~~~l~LGfTFSFP~~Q~si~~g~Li~W 193 (490)
T PLN02914 114 LGGKDERVIATEFEQVSIPQELMFGTSEELFDFIASGLANFVAKEGGKFHLPEGRKREIGFTFSFPVKQTSIDSGILMKW 193 (490)
T ss_pred ecCCCCceeeeeEEEecCChhhccCCHHHHHHHHHHHHHHHHHhccccccCCccccccceeeEeeeeecCCCCceEEEEe
Confidence 99876556666677899999999999999999999999999998765433333467999999999999999999999
Q ss_pred ---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCCCC
Q 011505 191 ---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVP 261 (484)
Q Consensus 191 ---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~ 261 (484)
+|+||+++|++||+|+++||+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+|+++..
T Consensus 194 TKGF~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~~~~iGlIlGTGtNacY~E~~~~i~k~~~~~ 273 (490)
T PLN02914 194 TKGFAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDDDVMVAVILGTGTNACYVERTDAIPKLQGQK 273 (490)
T ss_pred ccccccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCCCceEEEEEECCeeeEEEeecccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q 011505 262 SKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPF 341 (484)
Q Consensus 262 ~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~ 341 (484)
+..++|+||||||+|+ +++|+|+||+++|++|.|||+|+||||+||||||||+|++|+++++++.||++..|+.|.+||
T Consensus 274 ~~~~~miINtEwG~F~-~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlvLl~l~~~~~lF~~~~~~~L~~~~ 352 (490)
T PLN02914 274 SSSGRTIINTEWGAFS-DGLPLTEFDREMDAASINPGEQIFEKTISGMYLGEIVRRVLLKMAETSDLFGHFVPEKLSTPF 352 (490)
T ss_pred CCCceEEEeccccccC-CCCCCChHHHHHhhCCCCCCcchhhhHHhhhhHHHHHHHHHHHHHHhcccccCCCcHhhcCCC
Confidence 6778999999999996 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcc
Q 011505 342 ALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQK 421 (484)
Q Consensus 342 ~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~ 421 (484)
+|+|++||+|+.|+++++..+..+|++.|+++ ++.+|++.+++||++|.+|||||+|++|+||+++++.........++
T Consensus 353 ~l~T~~ls~i~~D~s~~l~~~~~~l~~~~~~~-~~~~d~~~vr~i~~~V~~RAArL~Aa~iaail~k~~~~~~~~~~~~~ 431 (490)
T PLN02914 353 ALRTPHLCAMQQDNSDDLQAVGSILYDVLGVE-ASLSARRRVVEVCDTIVKRGGRLAGAGIVGILEKMEEDSKGMIFGKR 431 (490)
T ss_pred ccccHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCce
Confidence 99999999999999999999999999999995 89999999999999999999999999999999999873211112246
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
.+||||||||+|||.|+++++++++++++++..++|+|++++||||+|||++||++++|
T Consensus 432 ~~VavDGSv~~~~p~f~~~l~~~l~ellg~~~~~~i~i~~a~DGSGvGAAl~AA~~s~~ 490 (490)
T PLN02914 432 TVVAMDGGLYEKYPQYRRYMQDAVTELLGLELSKNIAIEHTKDGSGIGAALLAATNSKY 490 (490)
T ss_pred EEEEEeCchhhcCccHHHHHHHHHHHHhCcccCCcEEEEEccCchHHHHHHHHHHhhcC
Confidence 99999999999999999999999999998877779999999999999999999999876
No 5
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.1e-113 Score=885.75 Aligned_cols=437 Identities=44% Similarity=0.687 Sum_probs=407.3
Q ss_pred CCchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC-CCcceeecccccCCCCCceeeEEEEEeCCceEEE
Q 011505 31 GGKCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGG-SKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRV 109 (484)
Q Consensus 31 ~~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~-s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv 109 (484)
..+++.+..+++++++.|.+|.++|++|+++|.+||++||++... +.++||||||.++|+|+|+|.|||||||||||||
T Consensus 21 ~~~~~~~~~~l~~~~~~f~l~~~~L~~v~~~~~~em~~gL~~~~~g~~~~mlpt~V~~lP~G~E~G~~lalDLGGTn~Rv 100 (474)
T KOG1369|consen 21 ASRLAAVSRQLEELLALFQLPDEQLREVVDAFREEMERGLAKKTHGSAVKMLPTYVPDLPDGTEKGKFLALDLGGTNFRV 100 (474)
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhhccCCCcccccchhhcccCCCCCcCCCEEEEecCCCceEE
Confidence 357888999999999999999999999999999999999995443 4499999999999999999999999999999999
Q ss_pred EEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceE
Q 011505 110 LRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGT 189 (484)
Q Consensus 110 ~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~ 189 (484)
++|.|+|++. ...+..++|+||.++|++++++|||||++|+.+|+++++... ...+|+||||||||+|+++++|+
T Consensus 101 ~~v~L~g~~~-~~~~~~~~~~ip~~~m~gt~~~Lfd~Ia~~l~~F~~~~~~~~----~~~l~lgFTFSfP~~Q~si~~g~ 175 (474)
T KOG1369|consen 101 LLVKLGGGRT-SVRMYNKIYAIPEEIMQGTGEELFDFIARCLADFLDKMGLKG----ASKLPLGFTFSFPCRQTSIDKGT 175 (474)
T ss_pred EEEEecCCcc-cceeeeeeEecCHHHHcCchHHHHHHHHHHHHHHHHHhcccc----ccccccceEEeeeeeecccccce
Confidence 9999998765 455566789999999999999999999999999999987641 12299999999999999999999
Q ss_pred E------------ECccHHHHHHHHHHhcCCC-ceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccC
Q 011505 190 L------------VGRDVVEELSRAMAKQGLD-MSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPK 256 (484)
Q Consensus 190 l------------~G~dv~~~L~~al~r~gl~-v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k 256 (484)
| +|+||+++|+++|+|++++ +.|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|++
T Consensus 176 L~~wTkGf~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~~~~~igvI~GTGtNacY~e~~~~i~k 255 (474)
T KOG1369|consen 176 LIRWTKGFKATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYEDPNCEIGVIFGTGTNACYMEDMRNIEK 255 (474)
T ss_pred EEEecccccchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecCCCcEEEEEECCCccceeeeeccchhh
Confidence 9 9999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcEEEeCCCCCCC--CCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCC
Q 011505 257 WHGVPSKSGEMVINMEWGDFR--SSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVP 334 (484)
Q Consensus 257 ~~~~~~~~g~miIN~EwG~f~--~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~ 334 (484)
+++..... +|+||||||+|+ ..++|+|+||..+|++|.|||+|.||||+||||||||+|++|+++.+++.||++..
T Consensus 256 ~~~~~~~~-~miIN~EWG~F~~~~~~l~~T~yD~~vD~eS~npG~~~~EKmisGmYLGEivR~vLl~m~~~~~lf~~~~- 333 (474)
T KOG1369|consen 256 VEGDAGRG-PMCINTEWGAFGDNSLDLPRTEYDVVVDEESLNPGKQLFEKMISGMYLGEIVRLVLLDLLEEGLLFGGQS- 333 (474)
T ss_pred cccccCCC-ceEEEccccCCCccccccchhhHHHHHhhhcCCcchhHHHHHhccccHHHHHHHHHHHHhHhhhhhcccc-
Confidence 99876555 899999999999 45699999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 011505 335 PKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAA 414 (484)
Q Consensus 335 ~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~ 414 (484)
++| +|+.|+|+++|+|++|.++++..+.. +.+.++++..+.+|++.++++|+.|++|||||+||||+||+++++.
T Consensus 334 ~~l-~p~~~~T~~~S~i~~D~~~~l~~~~~-~~~~l~~~~~~~~~r~~V~~vc~~v~~RaA~L~aagIaail~k~~~--- 408 (474)
T KOG1369|consen 334 TKL-TPFIFETKYVSAIEEDDTGALQETEK-ILDLLGLETTTTEDRKLVREVCDVVSRRAARLAAAGIAAILNKTGE--- 408 (474)
T ss_pred ccc-CcceeccchHHhHhcCCchHHHHHHH-HHHhhCCCcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcc---
Confidence 777 99999999999999999999999988 6666999989999999999999999999999999999999999996
Q ss_pred CCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhcccccC
Q 011505 415 KDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKYLQD 483 (484)
Q Consensus 415 ~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~~~~ 483 (484)
...++++||+|||+|++||.|+++|++++++++| ...+|.|.+++|||++|||++||++++++|.
T Consensus 409 --~~~~~~~VgvdGsly~~yP~f~~~m~~~l~eLlg--~~~~v~i~~s~dgSg~GAAL~Aav~~~~~~~ 473 (474)
T KOG1369|consen 409 --LSRKRVTVGVDGSLYKNHPFFREYLKEALRELLG--PSIHVKLVLSEDGSGRGAALIAAVASRLKQE 473 (474)
T ss_pred --cccCceEEEeccchhHcCchHHHHHHHHHHHHhC--CCceEEEEECCCCccccHHHHHHHHhhhhcc
Confidence 2346799999999999999999999999999998 3568999999999999999999999999875
No 6
>PTZ00107 hexokinase; Provisional
Probab=100.00 E-value=2.1e-108 Score=864.88 Aligned_cols=417 Identities=36% Similarity=0.555 Sum_probs=378.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC---------CCCCcceeecccccCCCCCceeeEEEEEeCCceE
Q 011505 37 ANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE---------GGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNF 107 (484)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~---------~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnl 107 (484)
....+++++++|.+|.++|++|+++|.+||++||+++ ++|+++||||||+++|+|+|+|.|||||||||||
T Consensus 7 ~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~~~~~~~~~~~s~l~Mlps~v~~lPtG~E~G~fLAlDlGGTN~ 86 (464)
T PTZ00107 7 QRVRLASLVNQFTMSKEKLKELVDYFLYELVEGLEAHRRHRNLWIPNECSFKMLDSCVYNLPTGKEKGVYYAIDFGGTNF 86 (464)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccccccCCCCCCCccceEEEEecCCceE
Confidence 4566888888999999999999999999999999875 3588999999999999999999999999999999
Q ss_pred EEEEEEeCCCcceeEEeeeeeeecCCCcccc---------CcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeee
Q 011505 108 RVLRVHLGGKGVGLINQEFAEVSIPPHLMTG---------TSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSF 178 (484)
Q Consensus 108 Rv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~---------~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSf 178 (484)
||++|+|.|++. .....+++.||++++.+ ++++||||||+||.+|++++.... ...+.++|||||||
T Consensus 87 RV~~V~L~g~~~--~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~~~~~~--~~~~~l~lGfTFSF 162 (464)
T PTZ00107 87 RAVRVSLRGGGK--MERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEENGDPE--DLNKPVPVGFTFSF 162 (464)
T ss_pred EEEEEEeCCCCc--eeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHhccccc--cccccccceeEEee
Confidence 999999988643 22334579999998888 899999999999999999876211 12357999999999
Q ss_pred eeeeeecCceEE-----------------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC----CCcEEEE
Q 011505 179 PVMQTSINTGTL-----------------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN----KDVVAAV 237 (484)
Q Consensus 179 Pv~q~~~~~G~l-----------------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~----~~~~igl 237 (484)
|++|+++++|+| +|+||+++|+++|+|+++||+|+||+|||||||++++|.+ ++|.||+
T Consensus 163 P~~Q~si~~g~Li~WtKGF~~~~~~~~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGl 242 (464)
T PTZ00107 163 PCTQLSVNNAILIDWTKGFETGRATNDPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGV 242 (464)
T ss_pred eeecccCCceEEEEeccceeeccCCCCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEE
Confidence 999999999999 6899999999999999999999999999999999999999 9999999
Q ss_pred EEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHH
Q 011505 238 ILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRR 317 (484)
Q Consensus 238 IlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~ 317 (484)
|+|||||+||+|+.... ...++|+||||||+|+ +.+|+|+||+++|+.|.|||+|+||||+||||||||+|+
T Consensus 243 IlGTG~NacY~E~~~~~-------~~~~~~iINtEwG~F~-~~lp~T~~D~~lD~~S~npg~Q~fEKmiSG~YLGEi~Rl 314 (464)
T PTZ00107 243 IIGTGSNACYFEPEVSA-------YGYAGTPINMECGNFD-SKLPITPYDLEMDWYTPNRGRQQFEKMISGAYLGEISRR 314 (464)
T ss_pred EEeccccceeeehhhcc-------CCCCcEEEEeeccccC-CCCCCChHHHHHhhcCCCCCcCchhhHHhhhhHHHHHHH
Confidence 99999999999954321 1245799999999996 569999999999999999999999999999999999999
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 011505 318 VLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARL 397 (484)
Q Consensus 318 il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l 397 (484)
+|+++++++ .|+.|.++++|+|+++|.|+.|+++++..+..+|.+.+++. ++.+|++.+++||++|.+|||+|
T Consensus 315 vl~~l~~~~------~~~~l~~~~~~~t~~ls~i~~d~s~~l~~~~~~l~~~~~~~-~~~~d~~~lr~i~~~V~~RAA~L 387 (464)
T PTZ00107 315 LIVHLLQLK------APPKMWQSGSFESEDASMILNDQSPDLQFSRQVIKEAWDVD-LTDEDLYTIRKICELVRGRAAQL 387 (464)
T ss_pred HHHHHHhcC------CchhhcCCcccccHHHHhhhcCCCchHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998754 47789999999999999999999999999999999989985 78899999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHh
Q 011505 398 AAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASH 477 (484)
Q Consensus 398 ~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~ 477 (484)
+|++|+||+++++.. ..+++||||||+|++||.|+++++++++++++++ ..+|++++++||||+|||++||++
T Consensus 388 ~Aa~iaail~k~~~~------~~~~~VgvDGSv~~~~p~f~~~~~~~l~~ll~~~-~~~v~l~~a~DGSg~GAAl~AA~~ 460 (464)
T PTZ00107 388 AAAFIAAPAKKTRTV------QGKATVAIDGSVYVKNPWFRRLLQEYINSILGPD-AGNVVFYLADDGSGKGAAIIAAMV 460 (464)
T ss_pred HHHHHHHHHHHhCCC------CCceEEEEeCcceecCccHHHHHHHHHHHHhCCC-CCcEEEEEccCchHHHHHHHHHHh
Confidence 999999999999862 1459999999999999999999999999999876 568999999999999999999998
Q ss_pred cc
Q 011505 478 SK 479 (484)
Q Consensus 478 ~~ 479 (484)
++
T Consensus 461 ~~ 462 (464)
T PTZ00107 461 AN 462 (464)
T ss_pred cc
Confidence 63
No 7
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-94 Score=729.95 Aligned_cols=436 Identities=39% Similarity=0.594 Sum_probs=402.0
Q ss_pred chhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEE
Q 011505 33 KCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRV 112 (484)
Q Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V 112 (484)
-|..+++.+.++++.|.+|.|+|.+++++|.+||++||+...++.++|+|+||..+|+|+|+|.||+||+||||||+|+|
T Consensus 13 ~~~~l~~~~~~~~~~~~~p~e~l~~v~~~Fieel~kgL~~~~G~~l~MIP~~v~~~p~g~e~g~~LaiD~GGTnlRvc~V 92 (466)
T COG5026 13 VEAALEQAVEELVESFTVPTEDLREVVKAFIEELEKGLQPKSGDFLPMIPTWVAPLPTGNESGSVLAIDLGGTNLRVCLV 92 (466)
T ss_pred ccHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHhccCCCCCCccccccccccCCCCCCCCCCEEEEecCCceEEEEEE
Confidence 47789999999999999999999999999999999999943334499999999999999999999999999999999999
Q ss_pred EeCCCcceeEEeeeeeeecCCCcccc-CcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE-
Q 011505 113 HLGGKGVGLINQEFAEVSIPPHLMTG-TSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL- 190 (484)
Q Consensus 113 ~l~g~~~~i~~~~~~~~~ip~~~~~~-~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l- 190 (484)
+|+|.+...+.+ + ++.+|.+.... +.+++|++||++++.|++++.++. ...++++|||||||++|+++++|+|
T Consensus 93 ~l~g~gt~~~~~-s-ks~lp~e~~~~~~~~~l~~~iadrl~~fi~~~~~~~---~~~~l~~gfTFSYP~~q~sin~g~l~ 167 (466)
T COG5026 93 VLGGDGTFDIEQ-S-KSFLPVECRDSESRDELFGFIADRLAAFIKEQHPSG---YGSKLPIGFTFSYPLNQTSINEGQLI 167 (466)
T ss_pred EeCCCCCccccc-C-cccCchhhccCCChHHHHHHHHHHHHHHHHHhCchh---ccCcceeeEEEeccccccccCceeeE
Confidence 999876654443 2 34499998765 789999999999999999987654 3568999999999999999999999
Q ss_pred -----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCC
Q 011505 191 -----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHG 259 (484)
Q Consensus 191 -----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 259 (484)
+|+||+++|+++|+++++|++|++|+|||+||++++.|.++++.||+|+|||||+||+|+...|||++.
T Consensus 168 rwTKgf~i~e~ig~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~yt~~~~~iG~IfGTGtN~~y~e~~~~ipkl~~ 247 (466)
T COG5026 168 RWTKGFDIPEVIGTDVVRLLQEALSARNLPIRVVAVINDTTGTLLASVYTSSETIIGIIFGTGTNGCYCEPKGRIPKLPR 247 (466)
T ss_pred eecccCcchhhhhhhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHhhcCCCCeEEEEEecCccceEEeecccCCcCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred C-CCCCCcEEEeCCCCCCCCCC--CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCC
Q 011505 260 V-PSKSGEMVINMEWGDFRSSH--LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPK 336 (484)
Q Consensus 260 ~-~~~~g~miIN~EwG~f~~~~--lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~ 336 (484)
. .++.+.|+||+|||.|++.+ ||+|+||..+|++|.|||.|.||||+||+||||++|++|.++..++.+|.+..|++
T Consensus 248 d~~~~~~pm~iN~EwGsfdn~~~~Lp~t~ydv~idq~s~~pg~~~~Ek~~sG~yLGellr~~L~~l~~qg~~~~~q~~~~ 327 (466)
T COG5026 248 DDLPETGPMLINCEWGSFDNELSVLPRTKYDVLIDQESPNPGHQIFEKMSSGMYLGELLRLILRNLYEQGLIFNGQDPEK 327 (466)
T ss_pred ccccccCCeEEEecccccCcceeeccccceeeeeccCCCCcchHHHhhhhcceeHHHHHHHHHHHHHHHHhhccccchhh
Confidence 3 46778899999999998655 99999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 011505 337 LEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKD 416 (484)
Q Consensus 337 l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~ 416 (484)
+..|+.++|+.+|.++.|+++.++++...+...|+.+ .+.++++.++.+|++|.+|||||+|++|+|++.+.+..
T Consensus 328 ~~~p~~l~t~~~s~i~~D~~~nl~~t~~~f~~~~~~~-tt~eer~lI~~l~~~i~~RAArlaa~~iaAi~~ktG~~---- 402 (466)
T COG5026 328 LTDPFALSTSVLSRIEEDPFENLRNTLTTFLNDFRAP-TTKEERKLIRRLVELIGRRAARLAAVPIAAIVIKTGAY---- 402 (466)
T ss_pred cccceeeecchhhhhccccccccchhHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhHHHHhhhHHHhhhhcCCC----
Confidence 9999999999999999999999999999999989996 88899999999999999999999999999999999952
Q ss_pred CCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccccc
Q 011505 417 GDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKYLQ 482 (484)
Q Consensus 417 ~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~~~ 482 (484)
++-.|+.||++|++||.|+++++++++++++++.. ++.+++.+|||++|||++|+.+.+.+|
T Consensus 403 ---k~~~v~~dGsv~e~yp~f~~~~~~~l~~~~g~~~~-~i~i~~a~dgsglGAAl~a~~~~k~~~ 464 (466)
T COG5026 403 ---KAYHVGADGSVIERYPGFRSMLREALKALLGEEGE-KIKIKPAEDGSGLGAALCALLAQKPKA 464 (466)
T ss_pred ---ccceeeeecchhhhchhHHHHHHHHHHHhhcccCc-eeeEEecccCcchHHHHHHHHhccccc
Confidence 23569999999999999999999999999995554 899999999999999999998876544
No 8
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=100.00 E-value=5.6e-63 Score=484.58 Aligned_cols=241 Identities=42% Similarity=0.721 Sum_probs=214.5
Q ss_pred CcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCC--CCCCchhhhhhhccCCCCCcceeeeccccc
Q 011505 232 DVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSS--HLSLSEYDNALDAESLNPGEQIFEKMISGM 309 (484)
Q Consensus 232 ~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~--~lp~T~~D~~lD~~s~npg~q~fEkm~SG~ 309 (484)
+|.||+|+|||+|+||+|+.++|+++++ ..++|+||||||+|++. .+|+|+||+.||+.|.|||+|+||||+||+
T Consensus 1 ~~~iGlIlGTG~Na~Y~e~~~~i~~~~~---~~~~~iINtEwg~f~~~~~~~~~t~~D~~lD~~s~~pg~q~~EKmvsG~ 77 (243)
T PF03727_consen 1 ECRIGLILGTGTNACYMEKTSNIPKLKG---KDGKMIINTEWGNFDNGLLDLPRTEYDKQLDAESPNPGFQPFEKMVSGM 77 (243)
T ss_dssp TEEEEEEESSSEEEEEEEEGGG-TTSST---SSSEEEEEE-GGGTTTTTTTTTS-HHHHHHHHTSSSTTSSTTHHHTSHH
T ss_pred CcEEEEEEeCCeeEEEeeecccCccccc---cCCeEEEEeecCCCCCCCccCCCCcccHHHhhhhhccCceEEeeEecee
Confidence 4899999999999999999999999988 67899999999999653 389999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 011505 310 YLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNI 389 (484)
Q Consensus 310 YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~ 389 (484)
|||||+|++|+++++++.||++..|+.|.++++|+|++||.+++|+++++..++.+|...|+++ ++.+|++.+++||++
T Consensus 78 YLGEl~Rlvl~~l~~~~~lf~~~~~~~l~~~~~~~t~~~s~i~~d~~~~~~~~~~~l~~~~~~~-~t~~d~~~lr~I~~a 156 (243)
T PF03727_consen 78 YLGELVRLVLLDLIKEGLLFGGQDPEKLNTPYSFDTKFLSEIEEDPSDDLSETREILQEFFGLP-PTEEDRQILRRICEA 156 (243)
T ss_dssp HHHHHHHHHHHHHHHTTSSGGGS--TTTTSTTSS-HHHHHHHTCT-TTCHHHHHHHHHHCTTSS-S-HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCccCCcchHHhcCCCcccHHHHhhhhhhcccchHHHHHHHhhccCCC-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985 899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHH
Q 011505 390 VATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIG 469 (484)
Q Consensus 390 V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iG 469 (484)
|++|||+|+|++|+||+++++.... .+.++++|++|||+|++||.|++++++++++++++. ..+|+|++++|||++|
T Consensus 157 V~~RAA~L~Aa~iaail~~~~~~~~--~~~~~v~VavDGSv~~~~p~f~~~l~~~l~~L~~~~-~~~v~~~~~~dgsg~G 233 (243)
T PF03727_consen 157 VSTRAARLVAAAIAAILNKIRENKG--RPRREVTVAVDGSVYEKYPNFRERLQEALDELLPEE-GCKVEFVLSEDGSGVG 233 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCT--CSSEEEEEEEESHHHHHSTTHHHHHHHHHHHHSTT--CEEEEEEE-SSTHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhhhcccc--ccCCceEEEEeCcceeeCHHHHHHHHHHHHHhcccc-cceEEEEEecCchHHH
Confidence 9999999999999999999743211 234579999999999999999999999999999876 5679999999999999
Q ss_pred HHHHHHHhcc
Q 011505 470 AALLAASHSK 479 (484)
Q Consensus 470 AAl~Aa~~~~ 479 (484)
||++||++.|
T Consensus 234 AAi~AA~a~r 243 (243)
T PF03727_consen 234 AAIAAAVACR 243 (243)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 9999999864
No 9
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=100.00 E-value=9.1e-51 Score=387.58 Aligned_cols=190 Identities=47% Similarity=0.742 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCC--CcceeecccccCCCCCceeeEEEEEeCCceEEEEEEE
Q 011505 36 KANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGS--KLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVH 113 (484)
Q Consensus 36 ~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s--~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~ 113 (484)
...+.++++.+.|.+|.++|++|+++|++||+.||++++.+ +++||||||+++|+|+|+|.|||||||||||||++|+
T Consensus 2 ~~~~~v~~~~~~f~~s~~~L~~i~~~f~~em~~gL~~~~~~~~~l~MlPs~v~~~P~G~E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 2 DLQQAVQKLLQQFTLSDEQLQEISDRFLEEMEKGLAKSSSSMSSLKMLPSYVTSLPTGNEKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp HHHHHHHHHHGGGS--HHHHHHHHHHHHHHHHHHHSTTTGCG-SS-EEEESEESSTTSTTEEEEEEEEESSSSEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHccCCCCceeeeccccccccCCCCCCCceEEEEeecCcEEEEEEEE
Confidence 45688899999999999999999999999999999976532 4999999999999999999999999999999999999
Q ss_pred eCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE---
Q 011505 114 LGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL--- 190 (484)
Q Consensus 114 l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l--- 190 (484)
|.|++...+ ..++++||.+++.+++++||||||+||.+|+++++.. +.++.++||||||||++|+++++|+|
T Consensus 82 L~g~~~~~~--~~~~~~ip~~~~~~~~~~lFd~ia~~i~~f~~~~~~~---~~~~~l~lGfTFSFP~~q~~~~~g~li~w 156 (206)
T PF00349_consen 82 LSGNGKVEI--EQEKYKIPEELMNGSGEELFDFIADCIAEFLKEHNLE---SRDEKLPLGFTFSFPVEQTSLNSGTLIRW 156 (206)
T ss_dssp EESSSEEEE--EEEEEE--HHHHTSBHHHHHHHHHHHHHHHHHHTTTT---STTSEEEEEEEEESSEEESSTTEEEE---
T ss_pred EcCCCCcee--eeccccCChHHhcCCcccHHHHHHHHHHHHHHHhccc---ccccccceEEEEEEEEEeccCCCeEEEEe
Confidence 988753223 3467999999999999999999999999999988652 13568999999999999999999999
Q ss_pred ---------ECccHHHHHHHHHHhcCCC-ceEEEEEechHHHHhcccccC
Q 011505 191 ---------VGRDVVEELSRAMAKQGLD-MSVSALVNDTVGTLAGGRYTN 230 (484)
Q Consensus 191 ---------~G~dv~~~L~~al~r~gl~-v~v~alvNDtvatlla~~y~~ 230 (484)
+|+|++++|+++|+|++++ |+|+||+|||||||++++|.+
T Consensus 157 tKgf~~~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y~~ 206 (206)
T PF00349_consen 157 TKGFDISGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAYQD 206 (206)
T ss_dssp -TT---BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHTT-
T ss_pred eccccccCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhcCC
Confidence 8999999999999999998 999999999999999999974
No 10
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.94 E-value=9e-25 Score=220.83 Aligned_cols=284 Identities=21% Similarity=0.223 Sum_probs=209.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.+++||+|||++|++++++.|+ ++... +++.|. .+.+++.+.|++.+.++....+ ....+|++
T Consensus 1 ~~lgidig~t~i~~~l~d~~g~---i~~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~~igia 63 (303)
T PRK13310 1 MYYGFDIGGTKIELGVFNEKLE---LQWEE--RVPTPR----DSYDAFLDAVCELVAEADQRFG--------CKGSVGIG 63 (303)
T ss_pred CeEEEEeCCCcEEEEEECCCCc---EEEEE--EecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CcceEEEe
Confidence 3799999999999999999875 55332 244332 2467888888888888765432 12469999
Q ss_pred eeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCc
Q 011505 176 FSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGS 243 (484)
Q Consensus 176 FSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~ 243 (484)
++.|++ .++|++ .+.|+.+.|++.+ ++|| .+.||+++.++++.|. +.++.+++.+|||+
T Consensus 64 ~pG~vd---~~~g~~~~~~~~~w~~~~l~~~l~~~~---~~pV---~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi 134 (303)
T PRK13310 64 IPGMPE---TEDGTLYAANVPAASGKPLRADLSARL---GRDV---RLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV 134 (303)
T ss_pred CCCccc---CCCCEEeccCcccccCCcHHHHHHHHH---CCCe---EEeccHhHHHHHHhhhccccCCCcEEEEEecCce
Confidence 999998 334443 7779999999988 8884 6999999999999875 46899999999999
Q ss_pred ceEEEcccccccCcCCCCCCCCcEEEeCCCC-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHH
Q 011505 244 NAAYVERAQAIPKWHGVPSKSGEMVINMEWG-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRM 322 (484)
Q Consensus 244 Na~yie~~~~i~k~~~~~~~~g~miIN~EwG-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~ 322 (484)
+++++.+++.+.+.++.++|.|||.|+.... .++... | ...-.|++. +|+|.++|+..|.+..+..
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~g~~~-~------~~~C~CG~~--gclE~~~S~~al~~~~~~~---- 201 (303)
T PRK13310 135 GGGLVFNGKPISGRSYITGEFGHMRLPVDALTLLGWDA-P------LRRCGCGQK--GCIENYLSGRGFEWLYQHY---- 201 (303)
T ss_pred EEEEEECCEEeeCCCCccccccceeecccccccccccC-C------CccCCCCCc--chHHHhhcHHHHHHHHHHh----
Confidence 9999999999999999999999999975410 000000 0 000136666 6999999999885443321
Q ss_pred HhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 323 AQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGI 402 (484)
Q Consensus 323 ~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~i 402 (484)
. + . .++ ..++++. ++..+..|..+++++++++|.+|
T Consensus 202 ---~---~---~-------~~~-----------------~~~l~~~-----------~~~gd~~a~~~~~~~~~~la~~l 237 (303)
T PRK13310 202 ---Y---G---E-------PLQ-----------------APEIIAL-----------YYQGDEQAVAHVERYLDLLAICL 237 (303)
T ss_pred ---c---c---C-------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 001 1222222 34455788999999999999999
Q ss_pred HHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEE---EcCChhHHHHHHHH
Q 011505 403 LGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIE---HSNDGSGIGAALLA 474 (484)
Q Consensus 403 aaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~---~~~Dgs~iGAAl~A 474 (484)
+++++.++| ..|.++|++.+ .+.|.+.+++.+++...+.. ..+.|+ +.+|++.+|||.++
T Consensus 238 ~n~~~~ldP----------~~IvlgG~~~~-~~~~~~~l~~~~~~~~~~~~-~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 238 GNILTIVDP----------HLVVLGGGLSN-FDAIYEQLPKRLPRHLLPVA-RVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred HHHHHHcCC----------CEEEECCcccC-hHHHHHHHHHHHHHHhcccc-cCceEEEcccCchHHHHhHHHHh
Confidence 999999999 68889999987 78899999999987654322 244554 37888999999876
No 11
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=99.94 E-value=1.3e-24 Score=220.74 Aligned_cols=293 Identities=19% Similarity=0.182 Sum_probs=218.3
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeee
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFS 177 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFS 177 (484)
++||+|||++|++++++.|+ ++.+. +++.+ .+.+++++.|.+.|.+|+++.+.. ..+...+|++++
T Consensus 1 lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gIgva~p 66 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGN---ILSKW--KVPTD-----TTPETIVDAIASAVDSFIQHIAKV----GHEIVAIGIGAP 66 (318)
T ss_pred CEEEeCCCEEEEEEECCCCC---EEEEE--EeCCC-----CCHHHHHHHHHHHHHHHHHhcCCC----ccceEEEEEecc
Confidence 58999999999999999885 55332 23332 246789999999999999876532 234678999999
Q ss_pred eeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCcce
Q 011505 178 FPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGSNA 245 (484)
Q Consensus 178 fPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na 245 (484)
.|++ ..+|.+ .+.|+.+.|++.+ ++| +.+.||+++..+++.|. +.++.+.+++|||+++
T Consensus 67 G~vd---~~~g~~~~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGiG~ 137 (318)
T TIGR00744 67 GPVN---RQRGTVYFAVNLDWKQEPLKEKVEARV---GLP---VVVENDANAAALGEYKKGAGKGARDVICITLGTGLGG 137 (318)
T ss_pred cccc---CCCCEEEecCCCCCCCCCHHHHHHHHH---CCC---EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCccEE
Confidence 9998 344443 6778999999988 888 46999999999999874 5688999999999999
Q ss_pred EEEcccccccCcCCCCCCCCcEEEeCCC-CCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHh
Q 011505 246 AYVERAQAIPKWHGVPSKSGEMVINMEW-GDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQ 324 (484)
Q Consensus 246 ~yie~~~~i~k~~~~~~~~g~miIN~Ew-G~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~ 324 (484)
+++.+++.+++.++.+++.|||+++.+. ..| .|++. +|+|.++|+..|-+..+......
T Consensus 138 giv~~G~~~~G~~g~agEiGh~~v~~~g~~~C----------------~cG~~--gclE~~~s~~al~~~~~~~~~~~-- 197 (318)
T TIGR00744 138 GIIINGEIRHGHNGVGAEIGHIRMVPDGRLLC----------------NCGKQ--GCIETYASATGLVRYAKRANAKP-- 197 (318)
T ss_pred EEEECCEEeecCCCCCcccCceEeCCCCCccc----------------CCCCc--chHHHHhCHHHHHHHHHHHhccc--
Confidence 9999999999999999999999998764 244 37776 69999999999855433311100
Q ss_pred ccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 325 EAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILG 404 (484)
Q Consensus 325 ~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaa 404 (484)
..++.+. ....+. . .....+++. ++..+..|..+++++++++|.+|++
T Consensus 198 -------~~~~~~~-----------~~~~~~--~-~~~~~i~~~-----------~~~gD~~a~~i~~~~~~~L~~~i~~ 245 (318)
T TIGR00744 198 -------ERAEVLL-----------ALGDGD--G-ISAKHVFVA-----------ARQGDPVAVDSYREVARWAGAGLAD 245 (318)
T ss_pred -------cccchhh-----------cccccC--C-CCHHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0001110 000000 0 022333333 4555688999999999999999999
Q ss_pred HHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHHH
Q 011505 405 VLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 405 ii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
+++.++| ..|.++|++.+..+.|.+.+++.+++...+.....+.|.. .++++.+|||.++.
T Consensus 246 ~~~~~dP----------~~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~~ 309 (318)
T TIGR00744 246 LASLFNP----------SAIVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLAR 309 (318)
T ss_pred HHHHhCC----------CEEEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHHH
Confidence 9999998 5799999999999999999999998875443333455543 77889999998864
No 12
>PRK09698 D-allose kinase; Provisional
Probab=99.93 E-value=6.4e-24 Score=214.44 Aligned_cols=275 Identities=18% Similarity=0.182 Sum_probs=206.8
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
.+++++||+|||++|+++++++|+ ++.. ..++.|.. .+.+ .++.+++.|.+++++.+ .+...+|
T Consensus 3 ~~~~lgidig~t~i~~~l~d~~g~---i~~~--~~~~~~~~---~~~~-~~~~l~~~i~~~~~~~~-------~~i~gig 66 (302)
T PRK09698 3 KNVVLGIDMGGTHIRFCLVDAEGE---ILHC--EKKRTAEV---IAPD-LVSGLGEMIDEYLRRFN-------ARCHGIV 66 (302)
T ss_pred ccEEEEEEcCCcEEEEEEEcCCCC---EEEE--EEeCCccc---cchH-HHHHHHHHHHHHHHHcC-------CCeeEEE
Confidence 468999999999999999999885 5533 22343322 2333 49999999999998753 2367899
Q ss_pred eeeeeeeeeeecCceEE-----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc---CCCcEEEEEE
Q 011505 174 FTFSFPVMQTSINTGTL-----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT---NKDVVAAVIL 239 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l-----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~---~~~~~iglIl 239 (484)
+.+++|++. ++|++ .+.|+.+.|++++ ++|| .+.||+++.++++.+. +.++.+++.+
T Consensus 67 ia~pG~vd~---~~g~i~~~~~~~~~~~~~~~l~~~l~~~~---~~pv---~v~NDa~aaa~~E~~~~~~~~~~~~~v~l 137 (302)
T PRK09698 67 MGFPALVSK---DRRTVISTPNLPLTALDLYDLADKLENTL---NCPV---FFSRDVNLQLLWDVKENNLTQQLVLGAYL 137 (302)
T ss_pred EeCCcceeC---CCCEEEecCCCCccccccCCHHHHHHHHh---CCCE---EEcchHhHHHHHHHHhcCCCCceEEEEEe
Confidence 999999983 33332 5678999999988 8884 6999999999988753 4568999999
Q ss_pred ccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHH
Q 011505 240 GTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVL 319 (484)
Q Consensus 240 GTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il 319 (484)
|||++++++.+++.+++.++.++|.|||.++.+...|. |+++ +|+|.++|+..|-+..+.
T Consensus 138 gtGIG~giv~~G~~~~G~~g~agEiGh~~v~~~~~~C~----------------CG~~--gclE~~~S~~al~~~~~~-- 197 (302)
T PRK09698 138 GTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCG----------------CGNP--GCLETNCSGMALRRWYEQ-- 197 (302)
T ss_pred cCceEEEEEECCEEeeCCCCCccccCceEeeCCCcccC----------------CCCc--cchHhhcCHHHHHHHHHH--
Confidence 99999999999999999999999999999987755664 8888 599999999987433221
Q ss_pred HHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 320 LRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAA 399 (484)
Q Consensus 320 ~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~A 399 (484)
. + +. . ....+++. .+ + ..+++++++++|
T Consensus 198 --~------~----~~-------~-----------------~~~~l~~~-~~----~-----------~~~~~~~~~~la 225 (302)
T PRK09698 198 --Q------P----RD-------Y-----------------PLSDLFVH-AG----D-----------HPFIQSLLENLA 225 (302)
T ss_pred --h------c----CC-------C-----------------CHHHHHHH-cC----C-----------HHHHHHHHHHHH
Confidence 0 0 00 0 01112221 11 0 125678889999
Q ss_pred HHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhccc-CCccEEEEE---cCChhHHHHHHHHH
Q 011505 400 AGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEE-LFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 400 a~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~-~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
.+|+.+++.++| ..|.++|++.+..+.|.+.+++.+++.+... ....+.|.. .+|++.+|||.++.
T Consensus 226 ~~l~~li~~ldP----------~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 226 RAIATSINLFDP----------DAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred HHHHHHHHHhCC----------CEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 999999999998 6899999999988889999999999876422 223455554 77888999998864
No 13
>PRK09557 fructokinase; Reviewed
Probab=99.93 E-value=7e-24 Score=214.21 Aligned_cols=275 Identities=19% Similarity=0.210 Sum_probs=206.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.+|++|+|||++|+++++++|+ ++.+. +++.| . .+.+++.+.|++.+.++..+.+ ....+|++
T Consensus 1 ~~lgidig~t~~~~~l~d~~g~---i~~~~--~~~~~--~--~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgi~ 63 (301)
T PRK09557 1 MRIGIDLGGTKIEVIALDDAGE---ELFRK--RLPTP--R--DDYQQTIEAIATLVDMAEQATG--------QRGTVGVG 63 (301)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEEE--EecCC--C--CCHHHHHHHHHHHHHHHHhhcC--------CceEEEec
Confidence 3799999999999999999875 55332 23333 1 2456788888888888765432 24679999
Q ss_pred eeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCc
Q 011505 176 FSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGS 243 (484)
Q Consensus 176 FSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~ 243 (484)
++.|++ .++|++ .+.++.+.|++.+ ++|| .+.||+++.++++.+. +.++.+.+++|||+
T Consensus 64 ~pG~vd---~~~g~i~~~~~~~~~~~~l~~~l~~~~---~~pv---~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGi 134 (301)
T PRK09557 64 IPGSIS---PYTGLVKNANSTWLNGQPLDKDLSARL---NREV---RLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGC 134 (301)
T ss_pred CcccCc---CCCCeEEecCCccccCCCHHHHHHHHH---CCCE---EEccchhHHHHHHHHhcccCCCCcEEEEEEccce
Confidence 999997 344443 5678999999999 8884 6999999999999874 46789999999999
Q ss_pred ceEEEcccccccCcCCCCCCCCcEEEeC---------CCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHH
Q 011505 244 NAAYVERAQAIPKWHGVPSKSGEMVINM---------EWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEI 314 (484)
Q Consensus 244 Na~yie~~~~i~k~~~~~~~~g~miIN~---------EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei 314 (484)
+++++.+++.+++.++.++|.|||.|+. ++..| .|++. +|+|.++|+..|-+.
T Consensus 135 G~giv~~G~l~~G~~g~aGEiGH~~v~~~~~~~~~~~~g~~c----------------~cG~~--GclE~~~S~~al~~~ 196 (301)
T PRK09557 135 GAGVAINGRVHIGGNGIAGEWGHNPLPWMDEDELRYRNEVPC----------------YCGKQ--GCIETFISGTGFATD 196 (301)
T ss_pred EEEEEECCEEEecCCCCCcccCceecccccccccccCCCCcC----------------CCCCC--CEEeEEEcHHHHHHH
Confidence 9999999999999999999999999963 11122 36776 699999999988543
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 011505 315 VRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRG 394 (484)
Q Consensus 315 ~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~Ra 394 (484)
.+.. + . . .++ ...+++. ++..+..|+.+++++
T Consensus 197 ~~~~-------~----~---~------~~~-----------------~~~l~~~-----------~~~gd~~a~~~l~~~ 228 (301)
T PRK09557 197 YRRL-------S----G---K------ALK-----------------GSEIIRL-----------VEEGDPVAELAFRRY 228 (301)
T ss_pred HHHh-------c----c---C------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHH
Confidence 3321 0 0 0 011 1222222 344457888999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEE---EcCChhHHHHH
Q 011505 395 ARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIE---HSNDGSGIGAA 471 (484)
Q Consensus 395 A~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~---~~~Dgs~iGAA 471 (484)
++++|.+|++++..++| ..|.++|++... +.|.+.+++.+++...+... .+.|+ +.++++.+|||
T Consensus 229 ~~~La~~l~~l~~~ldP----------~~IvlgG~~~~~-~~~~~~l~~~~~~~~~~~~~-~~~i~~s~~~~~a~~~GAa 296 (301)
T PRK09557 229 EDRLAKSLAHVINILDP----------DVIVLGGGMSNV-DRLYPTLPALLKQYVFGGEC-ETPVRKALHGDSSGVRGAA 296 (301)
T ss_pred HHHHHHHHHHHHHHhCC----------CEEEEcCcccch-HHHHHHHHHHHHHHhccccc-CCeEEEcccCCchhhhhhh
Confidence 99999999999999998 689999999874 77888999999876543222 34444 37889999999
Q ss_pred HHH
Q 011505 472 LLA 474 (484)
Q Consensus 472 l~A 474 (484)
.+.
T Consensus 297 ~~~ 299 (301)
T PRK09557 297 WLW 299 (301)
T ss_pred Hhh
Confidence 764
No 14
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=211.08 Aligned_cols=285 Identities=24% Similarity=0.292 Sum_probs=217.5
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+..++++||+|||+++++++++.|+ ++.. ++.+.|... ..+++.+.|.+.++++++.+. . ....+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~---~l~~--~~~~~~~~~---~~~~~~~~i~~~i~~~~~~~~-~------~~~~i 68 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE---ILLR--ERIPTPTPD---PEEAILEAILALVAELLKQAQ-G------RVAII 68 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc---EEEE--EEEecCCCC---chhHHHHHHHHHHHHHHHhcC-C------cCceE
Confidence 4568999999999999999999886 5433 224444432 225889999999999988763 1 23567
Q ss_pred eeeeeeeeeeeecCceE-E---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEE
Q 011505 173 GFTFSFPVMQTSINTGT-L---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVI 238 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~-l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglI 238 (484)
|+.++.|.. .+++. + .+.|+.+.|++.+ ++|| .|.||+++..++++|. +.++++.++
T Consensus 69 GIgi~~pg~---~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~Pv---~veNDan~aalaE~~~g~~~~~~~~~~i~ 139 (314)
T COG1940 69 GIGIPGPGD---VDNGTVIVPAPNLGWWNGVDLAEELEARL---GLPV---FVENDANAAALAEAWFGAGRGIDDVVYIT 139 (314)
T ss_pred EEEecccee---ccCCcEEeecCCCCccccccHHHHHHHHH---CCCE---EEecHHHHHHHHHHHhCCCCCCCCEEEEE
Confidence 777777777 44442 2 5678999999999 8995 6999999999999986 357999999
Q ss_pred EccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHH
Q 011505 239 LGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRV 318 (484)
Q Consensus 239 lGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~i 318 (484)
+|||++++++.+++.+++.++.+++.|||+++..+. |. |+++ +|+|.++|+..|-+ +.
T Consensus 140 ~gtGIG~giv~~g~l~~G~~g~age~Gh~~v~~~g~-c~----------------cG~~--GclE~~as~~al~~---~~ 197 (314)
T COG1940 140 LGTGIGGGIIVNGKLLRGANGNAGEIGHMVVDPDGE-CG----------------CGRR--GCLETYASGRAILR---RA 197 (314)
T ss_pred EccceeEEEEECCEEeecCCCccccccceEECCCCc-cC----------------CCCC--CchHHhccHHHHHH---HH
Confidence 999999999999999999999999999999998876 53 7888 59999999999944 33
Q ss_pred HHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011505 319 LLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLA 398 (484)
Q Consensus 319 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~ 398 (484)
.... +..... . ..+.+++. +...+..+..+++++++++
T Consensus 198 ~~~~-----------~~~~~~---~-----------------~~~~i~~~-----------a~~gd~~a~~~~~~~~~~l 235 (314)
T COG1940 198 AEAL-----------ESEAGE---L-----------------TAKDIFEL-----------AAAGDPLAKEVIERAADYL 235 (314)
T ss_pred Hhhc-----------cccccC---c-----------------CHHHHHHH-----------HHcCCHHHHHHHHHHHHHH
Confidence 1100 100000 0 23334443 5666688999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEec-eeeccchhHHHHHHHHHHHHhcccCCccEEE---EEc-CChhHHHHHHH
Q 011505 399 AAGILGVLKKMGRDAAKDGDKQKTVIAMDG-GLYEHYAEYSKCLENTLEELLGEELFKNIVI---EHS-NDGSGIGAALL 473 (484)
Q Consensus 399 Aa~iaaii~~~~~~~~~~~~~~~~~I~vdG-sv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i---~~~-~Dgs~iGAAl~ 473 (484)
|.+|++++..++| ..|.++| ++....+.+.+.+++.+....... .....+ .+. ++++.+|||++
T Consensus 236 a~~ianl~~~~~P----------~~IvigG~g~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~ga~~~ 304 (314)
T COG1940 236 ARGLANLINLLDP----------EVIVIGGGGVSALGDLLLPRLRKLLAKYLFPP-VLRPRIVEAALGGNDAGLIGAALL 304 (314)
T ss_pred HHHHHHHHHhcCC----------CeEEEECcccccchhHHHHHHHHHHHHhhcch-hcccchhhhhcccccccchhHHHH
Confidence 9999999999998 5788888 999999999999999888766541 111222 224 89999999998
Q ss_pred HHH
Q 011505 474 AAS 476 (484)
Q Consensus 474 Aa~ 476 (484)
+..
T Consensus 305 ~~~ 307 (314)
T COG1940 305 ALL 307 (314)
T ss_pred HHH
Confidence 854
No 15
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=99.92 E-value=6.3e-23 Score=206.22 Aligned_cols=272 Identities=16% Similarity=0.163 Sum_probs=202.5
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeee
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTF 176 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftF 176 (484)
++++|+|||++|++++++.|+ +... ..++.|.. .+.+++.+.|++.+.++..+ ...+|+++
T Consensus 3 ~lgvdig~~~i~~~l~dl~g~---i~~~--~~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~~ 63 (291)
T PRK05082 3 TLAIDIGGTKIAAALVGEDGQ---IRQR--RQIPTPAS---QTPEALRQALSALVSPLQAQ-----------ADRVAVAS 63 (291)
T ss_pred EEEEEECCCEEEEEEEcCCCc---EEEE--EEecCCCC---CCHHHHHHHHHHHHHHhhhc-----------CcEEEEeC
Confidence 799999999999999999885 5532 22444432 34667888888888877521 35699999
Q ss_pred eeeeeeeec---CceE---EECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc---CCCcEEEEEEccCcceEE
Q 011505 177 SFPVMQTSI---NTGT---LVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT---NKDVVAAVILGTGSNAAY 247 (484)
Q Consensus 177 SfPv~q~~~---~~G~---l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~---~~~~~iglIlGTG~Na~y 247 (484)
++|++.... .... +.+.|+.+.|++.+ ++|| .+.||+++.++++.+. +.++.+.+.+|||+++++
T Consensus 64 pG~vd~~~~~~~~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~a~a~aE~~~g~~~~~~~~~l~ig~GiG~gi 137 (291)
T PRK05082 64 TGIINDGILTALNPHNLGGLLHFPLVQTLEQLT---DLPT---IALNDAQAAAWAEYQALPDDIRNMVFITVSTGVGGGI 137 (291)
T ss_pred cccccCCeeEEecCCCCccccCCChHHHHHHHh---CCCE---EEECcHHHHHHHHHHhcCCCCCCEEEEEECCCcceEE
Confidence 999972211 1101 16788999999888 8884 6999999999999864 567899999999999999
Q ss_pred EcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccc
Q 011505 248 VERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAA 327 (484)
Q Consensus 248 ie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~ 327 (484)
+.+++.+++.++.++|.|||.|+.+...|. |+++ +|+|.++|+..|-+..+ ..
T Consensus 138 v~~G~~~~G~~g~AGEiGh~~v~~~g~~c~----------------CG~~--GclE~~~S~~al~~~~~----~~----- 190 (291)
T PRK05082 138 VLNGKLLTGPGGLAGHIGHTLADPHGPVCG----------------CGRR--GCVEAIASGRAIAAAAQ----GW----- 190 (291)
T ss_pred EECCEEeeCCCCccccccceEecCCCCCCC----------------CCCc--CchhhhcCHHHHHHHHH----Hh-----
Confidence 999999999999999999999987644453 7887 59999999998833211 10
Q ss_pred cCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 328 FFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLK 407 (484)
Q Consensus 328 lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~ 407 (484)
+ +. .+ ...+++. ++..+..|..+++++++++|.+|++++.
T Consensus 191 -~----~~-------~~-----------------~~~i~~~-----------~~~gd~~a~~~~~~~~~~la~~l~~l~~ 230 (291)
T PRK05082 191 -L----AG-------CD-----------------AKTIFER-----------AGQGDEQAQALINRSAQAIARLIADLKA 230 (291)
T ss_pred -h----cC-------CC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00 00 1122222 3334467888999999999999999999
Q ss_pred HhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHH
Q 011505 408 KMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLA 474 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~A 474 (484)
.++| ..|.++|++.. .+.|.+.+++++++.... ..+.|+. .+|++.+|||.++
T Consensus 231 ~~dp----------e~IvlgG~~~~-~~~~~~~i~~~l~~~~~~---~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 231 TLDC----------QCVVLGGSVGL-AEGYLELVQAYLAQEPAI---YHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred HhCC----------CEEEEcCcccc-HHHHHHHHHHHHHhcccc---cCCeEEECccCCchhhhhHHHHh
Confidence 9998 67889999765 677889999999875221 1344554 6788999999876
No 16
>PRK00292 glk glucokinase; Provisional
Probab=99.87 E-value=5.4e-21 Score=194.61 Aligned_cols=286 Identities=14% Similarity=0.147 Sum_probs=184.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhh-cccccccCCCCceeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQ-ESEEFKLSPGRQRELGF 174 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~-~~~~~~~~~~~~~~lGf 174 (484)
++|++|+||||+|++++++.+. .+... .+++.+ + ++.+.+.+.+++++ .. .+...+|+
T Consensus 3 ~~lgiDIGgT~i~~~l~~~~~~--~~~~~--~~~~~~------~----~~~~~~~l~~~l~~~~~-------~~~~gigI 61 (316)
T PRK00292 3 PALVGDIGGTNARFALCDWANG--EIEQI--KTYATA------D----YPSLEDAIRAYLADEHG-------VQVRSACF 61 (316)
T ss_pred eEEEEEcCccceEEEEEecCCC--ceeee--EEEecC------C----CCCHHHHHHHHHHhccC-------CCCceEEE
Confidence 5899999999999999997443 23322 223322 1 12245555666654 22 13568999
Q ss_pred eeeeeeeeeecCceEE--ECccHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccc----------C----CCcEEEE
Q 011505 175 TFSFPVMQTSINTGTL--VGRDVVEELSRAMAKQGLD-MSVSALVNDTVGTLAGGRYT----------N----KDVVAAV 237 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l--~G~dv~~~L~~al~r~gl~-v~v~alvNDtvatlla~~y~----------~----~~~~igl 237 (484)
.++.|++...+....+ .. + .+.|++.+ ++| | .|+||+++..+++.+. . .+..+.+
T Consensus 62 g~pG~vd~~~i~~~n~~w~~-~-~~~l~~~~---~~p~v---~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v 133 (316)
T PRK00292 62 AIAGPVDGDEVRMTNHHWAF-S-IAAMKQEL---GLDHL---LLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVI 133 (316)
T ss_pred EEeCcccCCEEEecCCCccc-C-HHHHHHHh---CCCeE---EEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEE
Confidence 9999997422111011 22 2 46677766 774 5 6999999999999752 1 3678999
Q ss_pred EEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHH
Q 011505 238 ILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRR 317 (484)
Q Consensus 238 IlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~ 317 (484)
.+|||++++++.++ +.+.++.++|.|||.++.. |.. +++.. ...|..-|..|+|.++||..|.++.+.
T Consensus 134 ~~GTGiG~giv~~g--~~g~~g~agE~GH~~~~~~-~~~--------~~~~~-~~~c~~~~~gclE~~~Sg~~L~~~~~~ 201 (316)
T PRK00292 134 GPGTGLGVAGLVPV--DGRWIVLPGEGGHVDFAPR-SEE--------EAQIL-QYLRAEFGHVSAERVLSGPGLVNLYRA 201 (316)
T ss_pred EcCCcceEEEEEec--CCceEEccCCcccccCCCC-ChH--------HHHHH-HHHHHhcCCceeEeeecHHhHHHHHHH
Confidence 99999999999887 6777777889999988643 110 00000 000222234799999999999775554
Q ss_pred HHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHH
Q 011505 318 VLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIV-ELCNIVATRGAR 396 (484)
Q Consensus 318 il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~-~i~~~V~~RaA~ 396 (484)
.... .+ .++. .+ ....+++. ++..+ .+|..+++++++
T Consensus 202 ~~~~---~~------~~~~-----~~-----------------~~~~i~~~-----------a~~gdd~~A~~~~~~~~~ 239 (316)
T PRK00292 202 ICKA---DG------REPE-----LL-----------------TPADITER-----------ALAGSCPLCRRTLSLFCV 239 (316)
T ss_pred HHhh---cC------CCcc-----cC-----------------CHHHHHHH-----------HHhCCChHHHHHHHHHHH
Confidence 3211 00 0000 00 12233333 55565 899999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCCCCCcce-EEEEeceeec-cchhHHH-HHHHHHHHHh-cc-c-CCccEEEEEcCChhHHHH
Q 011505 397 LAAAGILGVLKKMGRDAAKDGDKQKT-VIAMDGGLYE-HYAEYSK-CLENTLEELL-GE-E-LFKNIVIEHSNDGSGIGA 470 (484)
Q Consensus 397 l~Aa~iaaii~~~~~~~~~~~~~~~~-~I~vdGsv~~-~~p~f~~-~l~~~l~~l~-~~-~-~~~~v~i~~~~Dgs~iGA 470 (484)
++|.+|++++..++| . .|.+.||+.. ..+.|.+ .+.+.+++.. .+ . ....+.+...+|++++||
T Consensus 240 ~lg~~i~~l~~~~~P----------~~~vvi~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~agl~GA 309 (316)
T PRK00292 240 ILGRVAGNLALTLGA----------RGGVYIAGGIVPRFLEFFKASGFRAAFEDKGRFSAYLADIPVYVITHPQPGLLGA 309 (316)
T ss_pred HHHHHHHHHHHHhcC----------CceEEEeCchHHhHHhhhccHHHHHHHhcCCChhhHHhcCCEEEEcCCChHHHHH
Confidence 999999999999998 4 6778888874 5566655 5566665521 11 1 123566677899999999
Q ss_pred HHHH
Q 011505 471 ALLA 474 (484)
Q Consensus 471 Al~A 474 (484)
|.++
T Consensus 310 a~~~ 313 (316)
T PRK00292 310 GAYL 313 (316)
T ss_pred HHHH
Confidence 8876
No 17
>PRK12408 glucokinase; Provisional
Probab=99.87 E-value=2.2e-21 Score=199.17 Aligned_cols=292 Identities=17% Similarity=0.132 Sum_probs=185.4
Q ss_pred CCCceee-EEEEEeCCceEEEEEEEeCCCc---ceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccC
Q 011505 90 TGDEKGT-YYALDLGGTNFRVLRVHLGGKG---VGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLS 165 (484)
Q Consensus 90 ~G~E~G~-~laiDlGGTnlRv~~V~l~g~~---~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~ 165 (484)
++-|++. ||++|+||||+|+++|+.++.. ..+... ...|+.. .+. +.+.+.+|+++ .
T Consensus 10 ~~~~~~~~~L~~DIGGT~i~~al~d~~g~~~~~~~~~~~----~~~~t~~----~~~----~~~~i~~~~~~-~------ 70 (336)
T PRK12408 10 VAVPRPESFVAADVGGTHVRVALVCASPDAAKPVELLDY----RTYRCAD----YPS----LAAILADFLAE-C------ 70 (336)
T ss_pred ccCcccccEEEEEcChhhhheeEEeccCCccccccccce----eEecCCC----ccC----HHHHHHHHHhc-C------
Confidence 4556663 9999999999999999876541 012211 2223221 122 33445566654 1
Q ss_pred CCCceeeeeeeeeeeeeeecCceEE--EC---ccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc-----------
Q 011505 166 PGRQRELGFTFSFPVMQTSINTGTL--VG---RDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----------- 229 (484)
Q Consensus 166 ~~~~~~lGftFSfPv~q~~~~~G~l--~G---~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----------- 229 (484)
.+...+|+.++.| + .++|++ .+ ..+.+.|++.+ ++| .|.|+||.++..+++.|.
T Consensus 71 -~~~~~igIg~pG~-~---~~~g~v~~~nl~w~~~~~~l~~~~---~~~--~V~l~ND~naaa~gE~~~~~~~~~~~~g~ 140 (336)
T PRK12408 71 -APVRRGVIASAGY-A---LDDGRVITANLPWTLSPEQIRAQL---GLQ--AVHLVNDFEAVAYAAPYMEGNQVLQLSGP 140 (336)
T ss_pred -CCcCEEEEEecCC-c---eECCEEEecCCCCccCHHHHHHHc---CCC--eEEEeecHHHHHcccccCCHhHeeeecCC
Confidence 1246799999998 3 223444 11 12456666655 773 146999999999999876
Q ss_pred --CC-CcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhh-hhccCCCCCcceeeec
Q 011505 230 --NK-DVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNA-LDAESLNPGEQIFEKM 305 (484)
Q Consensus 230 --~~-~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~-lD~~s~npg~q~fEkm 305 (484)
+. ...+.+++|||.+++++.+++ .+.++.++|.|||.+...+ +.... ....|...+..|+|.+
T Consensus 141 ~~~~~~~~~~i~~GTGiGggivi~g~--~g~~~~agE~GH~~~~~~~-----------~~~~~l~~~~~~~~~~~~~E~~ 207 (336)
T PRK12408 141 AQAAAGPALVLGPGTGLGAALWIPNG--GRPVVLPTEAGQAALAAAS-----------ELEMQLLQHLLRTRTHVPIEHV 207 (336)
T ss_pred CCCCCCcEEEEECCCcceEEEEEcCC--CceeeecCccccccCCCCC-----------HHHHHHHHHHHhhCCceeHhhe
Confidence 23 578999999999999999877 6666677888888775321 00000 0111334445699999
Q ss_pred cccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHH-H
Q 011505 306 ISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTI-V 384 (484)
Q Consensus 306 ~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~-~ 384 (484)
+||+.|.++.+..... .+ . .+..++ .+.+++. ++.. +
T Consensus 208 ~Sg~gL~~~~~~~~~~---~~--------~---~~~~~~-----------------~~~v~~~-----------a~~ggD 245 (336)
T PRK12408 208 LSGPGLLNLYRALCAL---RG--------A---TPVHAS-----------------PAAITAA-----------ALAGDD 245 (336)
T ss_pred ecHHHHHHHHHHHHhh---cC--------C---CcccCC-----------------HHHHHHH-----------HHhCCC
Confidence 9999997776654211 00 0 000011 1223322 3333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceE-EEEeceeecc-chhHHHH--HHHHHHHHhcccCCc--cEE
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTV-IAMDGGLYEH-YAEYSKC--LENTLEELLGEELFK--NIV 458 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~-I~vdGsv~~~-~p~f~~~--l~~~l~~l~~~~~~~--~v~ 458 (484)
..|..++++.++++|.+|++++..++| .. |.++||+... .+.|.+. +++.+++...+.... .|.
T Consensus 246 ~~A~~~~~~~~~~La~~i~nl~~~ldP----------e~GIvIGGGIs~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~I~ 315 (336)
T PRK12408 246 ALAHEALQVFCGFLGSVVGDMALAYGA----------RGGVYLAGGILPQIADFLARSDFVERFLNKGPMRPALEQVPVK 315 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC----------CceEEEECchhHhHHhhhcCHHHHHHHhccCchhhHhcCCCEE
Confidence 889999999999999999999999999 56 8999999876 5666664 777766543222112 344
Q ss_pred EEEcCChhHHHHHHHHH
Q 011505 459 IEHSNDGSGIGAALLAA 475 (484)
Q Consensus 459 i~~~~Dgs~iGAAl~Aa 475 (484)
+....|++.+|||.++.
T Consensus 316 ~~~~~~agl~GAa~~~~ 332 (336)
T PRK12408 316 LVEHGQLGVLGAASWYL 332 (336)
T ss_pred EEeCCChHHHHHHHHHH
Confidence 44344899999986543
No 18
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=99.85 E-value=5.7e-20 Score=181.74 Aligned_cols=224 Identities=16% Similarity=0.167 Sum_probs=167.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.++++|+|||++|++++++.++ ++.+ ++++.|. .+.+++++.+.+.+.++..... ....+|++
T Consensus 1 ~~lgidiggt~i~~~l~d~~g~---i~~~--~~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gIgv~ 63 (256)
T PRK13311 1 MYYGFDMGGTKIELGVFDENLQ---RIWH--KRVPTPR----EDYPQLLQILRDLTEEADTYCG--------VQGSVGIG 63 (256)
T ss_pred CEEEEEECCCcEEEEEECCCCC---EEEE--EEecCCC----cCHHHHHHHHHHHHHHHHhhcC--------CCceEEEE
Confidence 4799999999999999999885 5533 2344442 2456788888887777643221 13479999
Q ss_pred eeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCc
Q 011505 176 FSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGS 243 (484)
Q Consensus 176 FSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~ 243 (484)
++.|++. ++|++ .+.|+++.|++.+ ++| +.+.||+++..+++.|. +.++.+++.+|||+
T Consensus 64 ~pG~vd~---~~g~i~~~~~~~w~~~~l~~~l~~~~---~~p---V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtGi 134 (256)
T PRK13311 64 IPGLPNA---DDGTVFTANVPSAMGQPLQADLSRLI---QRE---VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTGV 134 (256)
T ss_pred ecCcEEC---CCCEEEccCCCcccCCChHHHHHHHH---CCC---EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcCe
Confidence 9999973 33433 6789999999988 888 46999999999999885 46899999999999
Q ss_pred ceEEEcccccccCcCCCCCCCCcEEEe--CC-------CC-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHH
Q 011505 244 NAAYVERAQAIPKWHGVPSKSGEMVIN--ME-------WG-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGE 313 (484)
Q Consensus 244 Na~yie~~~~i~k~~~~~~~~g~miIN--~E-------wG-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLge 313 (484)
+++++.+++.+.+.++.++|.|||.+. .+ -| .| .|++. +|+|.++|+..|.+
T Consensus 135 G~giv~~G~l~~G~~g~AGEiGh~~v~~~~~~~~~~~~~~~~c----------------~cG~~--GclE~~~S~~ai~~ 196 (256)
T PRK13311 135 GGGLIVNGSIVSGRNHITGEFGHFRLPVDALDILGADIPRVPC----------------GCGHR--GCIENYISGRGFEW 196 (256)
T ss_pred EEEEEECCEEecCCCCCCccceeEEeccCcccccccCCCCCcC----------------CCCCc--cchhheecHHHHHH
Confidence 999999999999999999999999984 21 11 22 36666 59999999998854
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 011505 314 IVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATR 393 (484)
Q Consensus 314 i~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~R 393 (484)
..+. . . .. .. ...++++. ++..++.|+.++++
T Consensus 197 ~~~~----~------~----~~------~~-----------------~~~~l~~~-----------~~~gd~~a~~~~~~ 228 (256)
T PRK13311 197 MYSH----F------Y----QH------TL-----------------PATDIIAH-----------YAAGEPKAVAHVER 228 (256)
T ss_pred HHHH----h------c----cC------CC-----------------CHHHHHHH-----------HHcCCHHHHHHHHH
Confidence 3221 1 0 00 00 12233333 44456899999999
Q ss_pred HHHHHHHHHHHHHHHhCC
Q 011505 394 GARLAAAGILGVLKKMGR 411 (484)
Q Consensus 394 aA~l~Aa~iaaii~~~~~ 411 (484)
+++++|.+|+++++.+++
T Consensus 229 ~~~~la~~i~nl~~~~~~ 246 (256)
T PRK13311 229 FMDVLAVCLGNLLTMLGS 246 (256)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999999999999987
No 19
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=99.75 E-value=2.8e-17 Score=182.29 Aligned_cols=288 Identities=16% Similarity=0.162 Sum_probs=176.5
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
-|.+|++|+||||+|+++++-+|. +... .++|+.. |+.+.+.|.+|+++.+. .....+|
T Consensus 17 ~~~~L~iDIGGT~ir~al~~~~g~---i~~~----~~~~t~~--------~~~~~~~i~~~l~~~~~------~~~~~ig 75 (638)
T PRK14101 17 DGPRLLADVGGTNARFALETGPGE---ITQI----RVYPGAD--------YPTLTDAIRKYLKDVKI------GRVNHAA 75 (638)
T ss_pred CCCEEEEEcCchhheeeeecCCCc---ccce----eEEecCC--------CCCHHHHHHHHHHhcCC------CCcceEE
Confidence 356999999999999999965553 4322 3345422 24466677777765431 1357899
Q ss_pred eeeeeeeeeeecCceEE--ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcc--------ccc----CCCcEEEEEE
Q 011505 174 FTFSFPVMQTSINTGTL--VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGG--------RYT----NKDVVAAVIL 239 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l--~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~--------~y~----~~~~~iglIl 239 (484)
+.+++|++.......-+ . .++ +.|++.| |+| ++.++||.++..+++ .+. +.+..+.+++
T Consensus 76 ig~pGpVd~~~~~~~nl~w~-~~~-~~l~~~~---g~~--~v~l~ND~~aaA~ge~~l~~~e~~~~G~g~~~~~~~~~~l 148 (638)
T PRK14101 76 IAIANPVDGDQVRMTNHDWS-FSI-EATRRAL---GFD--TLLVVNDFTALAMALPGLTDAQRVQVGGGTRRQNSVIGLL 148 (638)
T ss_pred EEEecCccCCeeeecCCCcE-ecH-HHHHHHc---CCC--eEEEEchHHHHHcCCccCCHHHeEEeCCCCCCCCCcEEEE
Confidence 99999998432111111 2 244 6677666 765 367999999999995 332 3456788999
Q ss_pred ccCcceE---EE-cccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhh-hccCCCCCcceeeeccccccHHHH
Q 011505 240 GTGSNAA---YV-ERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNAL-DAESLNPGEQIFEKMISGMYLGEI 314 (484)
Q Consensus 240 GTG~Na~---yi-e~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~l-D~~s~npg~q~fEkm~SG~YLgei 314 (484)
||||+.+ .+ .+++.+. .++|.|||.++. .++-...+ ...+.+.|..|+|.++||+.|.++
T Consensus 149 GtGTGlG~a~lv~~~g~~~~----~g~E~GH~~~~~-----------~~~~e~~~~~~~~~~~g~~~~E~~~Sg~gL~~~ 213 (638)
T PRK14101 149 GPGTGLGVSGLIPADDRWIA----LGSEGGHASFAP-----------QDEREDLVLQYARKKYPHVSFERVCAGPGMEII 213 (638)
T ss_pred ECCccceeeEEEecCCeeEE----CCCCccccCCCC-----------CCHHHHHHHHHHHHhcCcceeeeecchhhHHHH
Confidence 7766544 43 4433221 123445544421 12111111 112344456799999999999888
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 011505 315 VRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRG 394 (484)
Q Consensus 315 ~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~Ra 394 (484)
.|...... + .+ .+..++ ..++++. ++..+.+|..++++.
T Consensus 214 ~~~~~~~~---~------~~----~~~~~~-----------------~~~i~~~-----------a~~gd~~A~~~~~~~ 252 (638)
T PRK14101 214 YRALAARD---K------KR----VAANVD-----------------TAEIVER-----------AHAGDALALEAVECF 252 (638)
T ss_pred HHHHHhhc---C------CC----CcCcCC-----------------HHHHHHH-----------HHCCCHHHHHHHHHH
Confidence 77643210 0 00 000011 2233333 445568999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccc-hhHHH-HHHHHHHHHhcc---c-CCccEEEEEcCChhHH
Q 011505 395 ARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHY-AEYSK-CLENTLEELLGE---E-LFKNIVIEHSNDGSGI 468 (484)
Q Consensus 395 A~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~-p~f~~-~l~~~l~~l~~~---~-~~~~v~i~~~~Dgs~i 468 (484)
++++|.++..++..+++. ..|.++||+..+. +.|.+ .+.+.++.. ++ - ..-.|.++..++.+++
T Consensus 253 ~~~lg~~~~nl~~~~~~p---------~~vvigGGIs~~~~~~l~~~~f~~~f~~k-g~~~~~~~~ipv~~i~~~~~~l~ 322 (638)
T PRK14101 253 CAILGTFAGNLALTLGAL---------GGIYIGGGVVPKLGELFTRSSFRARFEAK-GRFEAYLANIPTYLITAEYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHhCCC---------CcEEEeCcHHHHHHHHcChHHHHHHHHhC-CChHHHHhcCCEEEEeCCChhHH
Confidence 999999999999999831 5788999998553 44432 455554432 11 0 1236888889999999
Q ss_pred HHHHHHH
Q 011505 469 GAALLAA 475 (484)
Q Consensus 469 GAAl~Aa 475 (484)
|||..+.
T Consensus 323 Gaa~~~~ 329 (638)
T PRK14101 323 GVSAILA 329 (638)
T ss_pred HHHHHHH
Confidence 9976553
No 20
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=99.69 E-value=1.3e-16 Score=148.61 Aligned_cols=167 Identities=22% Similarity=0.332 Sum_probs=137.5
Q ss_pred EEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeee
Q 011505 99 ALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSF 178 (484)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSf 178 (484)
+||+|+|+++++++++.|+ ++.+. ++++| .+.+++++.+.+.+.+++.+... . .+|+++|.
T Consensus 1 gidig~~~i~~~l~d~~g~---ii~~~--~~~~~-----~~~~~~~~~l~~~i~~~~~~~~~--------~-gIgi~~pG 61 (179)
T PF00480_consen 1 GIDIGGTSIRIALVDLDGE---IIYSE--SIPTP-----TSPEELLDALAELIERLLADYGR--------S-GIGISVPG 61 (179)
T ss_dssp EEEEESSEEEEEEEETTSC---EEEEE--EEEHH-----SSHHHHHHHHHHHHHHHHHHHTC--------E-EEEEEESS
T ss_pred CEEECCCEEEEEEECCCCC---EEEEE--EEECC-----CCHHHHHHHHHHHHHHHHhhccc--------c-cEEEeccc
Confidence 6999999999999999886 66442 35555 35788999999999999887641 2 89999999
Q ss_pred eeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCcceE
Q 011505 179 PVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGSNAA 246 (484)
Q Consensus 179 Pv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na~ 246 (484)
|++ .++|.+ .+.++.+.|++.+ ++|| .+.||+++.++++.+. +.+..+.+.+|||++++
T Consensus 62 ~v~---~~~g~i~~~~~~~~~~~~l~~~l~~~~---~~pv---~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~GiG~~ 132 (179)
T PF00480_consen 62 IVD---SEKGRIISSPNPGWENIPLKEELEERF---GVPV---IIENDANAAALAEYWFGAAKDCDNFLYLYIGTGIGAG 132 (179)
T ss_dssp EEE---TTTTEEEECSSGTGTTCEHHHHHHHHH---TSEE---EEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSEEEE
T ss_pred cCc---CCCCeEEecCCCCcccCCHHHHhhccc---ceEE---EEecCCCcceeehhhcCccCCcceEEEEEeecCCCcc
Confidence 999 555544 7789999999999 8884 6999999999999874 45799999999999999
Q ss_pred EEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccH
Q 011505 247 YVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYL 311 (484)
Q Consensus 247 yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YL 311 (484)
++.+++.+.+.++.+++.+||.++.+.-.| .|++. +|+|.++|+..|
T Consensus 133 ii~~g~i~~G~~~~aGeigh~~~~~~~~~c----------------~cG~~--GClE~~~S~~Al 179 (179)
T PF00480_consen 133 IIINGKIYRGSNGFAGEIGHMPVDPNGEPC----------------YCGNR--GCLETYASGRAL 179 (179)
T ss_dssp EEETTEEETTTTS-TTGGGGSBSSTTSSB-----------------TTSSB--SBHHHHHSHHHH
T ss_pred eecccccccCCCccccceeeeeccCCCCcC----------------CCCCc--CcHHHhhChhhC
Confidence 999999999999989999999998773334 26666 699999999865
No 21
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=99.69 E-value=6.1e-16 Score=157.61 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=167.6
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeee
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFS 177 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFS 177 (484)
|++|+||||+|+++++.++. ++.. .+.++. +.++.+.+.|.+|+++..... .......|+..+
T Consensus 1 l~~DIGGT~i~~glvd~~g~---~l~~----~~~~~~-------~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~Igi~ 63 (316)
T TIGR00749 1 LVGDIGGTNARLALCEIAPG---EISQ----AKTYSG-------LDFPSLEAVVRVYLEEHKVEL---KDPIAKGCFAIA 63 (316)
T ss_pred CeEecCcceeeEEEEecCCC---ceee----eEEEec-------CCCCCHHHHHHHHHHhccccc---CCCcCeEEEEEe
Confidence 58999999999999987553 2221 111111 124556666667766532110 011345888999
Q ss_pred eeeeeeecCceEE-ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcc--------ccc----CCCcEEEEEEccCcc
Q 011505 178 FPVMQTSINTGTL-VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGG--------RYT----NKDVVAAVILGTGSN 244 (484)
Q Consensus 178 fPv~q~~~~~G~l-~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~--------~y~----~~~~~iglIlGTG~N 244 (484)
.|++.......-+ -..++. .|++.+ +++ .+.|+||.++..+++ .|. ..++.+.+++||||+
T Consensus 64 Gpv~~~~v~~~nl~w~~~~~-~l~~~~---g~~--~V~l~ND~naaa~ge~~l~~~~~~~~g~~~~~~~~~~v~lGtGtG 137 (316)
T TIGR00749 64 CPITGDWVAMTNHTWAFSIA-ELKQNL---GFS--HLEIINDFTAVSYAIPGLKKEDLIQFGGAEPVEGKPIAILGAGTG 137 (316)
T ss_pred CcccCCEEEecCCCCeeCHH-HHHHhc---CCC--eEEEEecHHHHHcCCCCCCHHHeEEeCCCCCCCCCcEEEEecCCC
Confidence 9985321111001 113563 666656 763 246999999999998 554 346678999966665
Q ss_pred eEE--Ec---ccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHH
Q 011505 245 AAY--VE---RAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVL 319 (484)
Q Consensus 245 a~y--ie---~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il 319 (484)
.+. +. +++.+ ..++|.|||.+... +.- . ..+...+...+ +..|+|.++||+.|.++.|...
T Consensus 138 ~G~~~vi~~~~g~l~----~~agE~GH~~~~~~-~~~---~---~~~~~~l~~~~---~~g~~E~~~Sg~gl~~~~~~~~ 203 (316)
T TIGR00749 138 LGVAHLIHQVDGRWV----VLPGEGGHVDFAPN-SEL---E---AIILEYLRAKI---GHVSAERVLSGPGLVNIYEALV 203 (316)
T ss_pred ceeeEEEEcCCCCEE----ECCCCcccccCCCC-CHH---H---HHHHHHHHHhc---CCceeeeeecHHHHHHHHHHHH
Confidence 553 55 44443 34668888877432 100 0 00001112234 3469999999999988877653
Q ss_pred HHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHH-HHHHHHHHHHHHHH
Q 011505 320 LRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIV-ELCNIVATRGARLA 398 (484)
Q Consensus 320 ~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~-~i~~~V~~RaA~l~ 398 (484)
... + ..... .... +.+ ..+.+++. ++..+ .+|..++++.++++
T Consensus 204 ~~~---~--------~~~~~----------~~~~---~~~-~~~~I~~a-----------a~~Gdd~~A~~~~~~~~~~l 247 (316)
T TIGR00749 204 KAD---P--------ERQFN----------KLPQ---ENL-KPKDISER-----------ALAGSCTDCRRALSLFCVIY 247 (316)
T ss_pred hhc---C--------ccccc----------cccc---ccC-CHHHHHHH-----------HHcCCCHHHHHHHHHHHHHH
Confidence 211 1 00000 0000 000 12344443 55565 89999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHH-HHHHHHHHH--hccc-CCccEEEEEcCChhHHHHH
Q 011505 399 AAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSK-CLENTLEEL--LGEE-LFKNIVIEHSNDGSGIGAA 471 (484)
Q Consensus 399 Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~-~l~~~l~~l--~~~~-~~~~v~i~~~~Dgs~iGAA 471 (484)
|.++++++..++|.. .++..+|.+.+.-+.+.+ .+.+.+++. +.+- ..-.|.++..++.+++|||
T Consensus 248 g~~i~nl~~~ldpeg--------gv~v~GG~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~pv~~i~~~~~~l~G~~ 316 (316)
T TIGR00749 248 GRFAGNLALNLGTRG--------GVYIAGGIVPRFIEFFKASGFRAAFEDKGRMKEYVHDIPVYVVLHDNPGLLGAG 316 (316)
T ss_pred HHHHHHHHHHhCCCC--------cEEEECcHHHhHHhhhCchHHHHHHhccCChhHHHhhCCEEEEcCCCccccCCC
Confidence 999999999999831 344444444344444443 344443321 0000 1235778889999999985
No 22
>PTZ00288 glucokinase 1; Provisional
Probab=99.51 E-value=5.1e-12 Score=132.29 Aligned_cols=328 Identities=15% Similarity=0.087 Sum_probs=185.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCcccc
Q 011505 59 ADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTG 138 (484)
Q Consensus 59 ~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~ 138 (484)
...+.+++.+-|+++. +| +--+++++.|+||||.|+++.++...+...... ..++.+ ++..
T Consensus 5 ~~~~~~~~~~~~~~~~--------~~-------~~~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~--~~~~~~--~~~~ 65 (405)
T PTZ00288 5 DEIFLEQLAEELKTDA--------SW-------SSGPIFVGCDVGGTNARVGFAREVQHDDSGVHI--IYVRFN--VTKT 65 (405)
T ss_pred hHHHHHHHHHHhccCc--------cc-------ccCCeEEEEEecCCceEEEEEeccCCCCCceeE--EEEecc--cccc
Confidence 3456677777776531 12 122479999999999999999983221111211 123444 1123
Q ss_pred CcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeec--------CceEEECccHHHHHHHHHHhcCCCc
Q 011505 139 TSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSI--------NTGTLVGRDVVEELSRAMAKQGLDM 210 (484)
Q Consensus 139 ~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~--------~~G~l~G~dv~~~L~~al~r~gl~v 210 (484)
+..++.+++++.+....+.... . ..+....|....|+..... +...+.+.+- .+ ++.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~~~~-~----~~~~~a~iAvAGPV~~~~~~~~~~~~~~~~~lTNlpw--~i--------~~~ 130 (405)
T PTZ00288 66 DIRELLEFFDEVLQKLKKNLSF-I----QRVAAGAISVPGPVTGGQLAGPFNNLKGIARLTDYPV--EL--------FPP 130 (405)
T ss_pred cHHHHHHHHHHHHHHHHhcCcc-c----cCcCeEEEEEeCceeCCEeeccccccccccccCCCCc--hh--------cCC
Confidence 4567888888777776543210 0 2234457778889963322 0001122211 01 334
Q ss_pred eEEEEEechHHHHhccccc--------------------------------CCCcEEEEEEccCcceEEEcccccccCcC
Q 011505 211 SVSALVNDTVGTLAGGRYT--------------------------------NKDVVAAVILGTGSNAAYVERAQAIPKWH 258 (484)
Q Consensus 211 ~v~alvNDtvatlla~~y~--------------------------------~~~~~iglIlGTG~Na~yie~~~~i~k~~ 258 (484)
.-+.++||=.|..++.... .....+.+.+|||.++|++.+...+.++.
T Consensus 131 ~~~~liNDfeA~aygi~~l~~~~~~~~~f~~~~~~~~~~~l~~~~~~g~~~~~~~~~Vlg~GTGLG~alli~~~l~~G~~ 210 (405)
T PTZ00288 131 GRSALLNDLEAGAYGVLAVSNAGRLSEYFKVMWKGTQWDALSEGKPAGSVIGRGRCMVLAPGTGLGSSLIHYVGVSDQYI 210 (405)
T ss_pred CeEEEEEhHHHHhCcccccChhhcccccccccccccceeeecCCCCCcccCCCCCEEEEEeccceeEEEEECCeecCCcc
Confidence 4467999998887765421 12345889999999999999988888888
Q ss_pred CCCCCCCcEEEeCCCCC-CCCCCCCCchhhhhhhcc-C-C--CCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCC
Q 011505 259 GVPSKSGEMVINMEWGD-FRSSHLSLSEYDNALDAE-S-L--NPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTV 333 (484)
Q Consensus 259 ~~~~~~g~miIN~EwG~-f~~~~lp~T~~D~~lD~~-s-~--npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~ 333 (484)
..++|.|||.++.--+. +.. . ..-|.+.-... | + +...-++|.++||+.|..+.|.... .. .
T Consensus 211 ~~agEgGHv~~~~~~~~~~~~-g--~~l~~~l~~~~~~~g~~~~~~vs~E~v~SG~GL~~ly~~l~~----~~------~ 277 (405)
T PTZ00288 211 VIPLECGHLSISWPANEDSDY-V--QALAGYLASKALSKGIDSTVYPIYEDIVSGRGLEFNYAYEKR----GN------K 277 (405)
T ss_pred cccccccceeeccCCCCccch-h--HHHHHHHHhhhccccccccCceeEeEEecHHHHHHHHHHHhc----cC------C
Confidence 88889999988531111 100 0 00000110000 0 0 0012389999999999777664311 00 0
Q ss_pred CCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011505 334 PPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRK-TIVELCNIVATRGARLAAAGILGVLKKMGRD 412 (484)
Q Consensus 334 ~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~-~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~ 412 (484)
++ +... ....+.+. +. ..+..|..++++.++++|.++..++..++|
T Consensus 278 ~~----~~~~-----------------~~a~ia~~-----------A~~~gD~~A~~al~~f~~~LG~~~~nlal~l~P- 324 (405)
T PTZ00288 278 PS----APLK-----------------EAAEVAKL-----------AKYGSDVAAVKAMKRHYKYLMRLAAEISMQFLP- 324 (405)
T ss_pred Cc----cCcC-----------------CHHHHHHH-----------HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
Confidence 00 0000 11222221 11 134788999999999999999999999998
Q ss_pred CcCCCCCcceEEEEeceeeccc-hhHHH-----HHHHHH-------HHHhcccCCccEEE-EEcCChhHHHHHHHHHHhc
Q 011505 413 AAKDGDKQKTVIAMDGGLYEHY-AEYSK-----CLENTL-------EELLGEELFKNIVI-EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 413 ~~~~~~~~~~~I~vdGsv~~~~-p~f~~-----~l~~~l-------~~l~~~~~~~~v~i-~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.+.||...+. |.|.+ .++... .+++. .-.|.+ +...+-+++|||..|...+
T Consensus 325 ---------~~VvIgGGi~~~~~~~l~~~~~~~f~~~f~~~~k~~r~~~l~---~ipv~~qv~~~~~gL~Gaa~~a~~~~ 392 (405)
T PTZ00288 325 ---------LTVVLMGDNIVYNSFFFDNPENVKQLQARITEHKMERLKFLS---RTTFLRQKKSVNLNLLGCLQFGSQLS 392 (405)
T ss_pred ---------CEEEEECccHHhhHHHHhccchHHHHHHHHhcCccChHHHHh---cCceEEEEeCCCccHHHHHHHHHHhh
Confidence 3366666554433 33321 222211 12221 124544 6688999999998886433
No 23
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=8.7e-10 Score=108.00 Aligned_cols=316 Identities=19% Similarity=0.221 Sum_probs=184.1
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
.|.|.++|=|+|.-|+.+|+..++ +.... ..--++......+..-+.|++.|.+-..+.+.+. ......||
T Consensus 2 ~~~y~GvEGgaT~s~~Vivd~~~~---~~~~a---~~~~Tnh~~ig~~~~~~rie~~i~~A~~k~g~d~---~~~lr~lg 72 (336)
T KOG1794|consen 2 KDFYGGVEGGATCSRLVIVDEDGT---ILGRA---VGGGTNHWLIGSTTCASRIEDMIREAKEKAGWDK---KGPLRSLG 72 (336)
T ss_pred CceeEeecCCcceeEEEEECCCCC---EeeEe---eccccccccCCchHHHHHHHHHHHHHHhhcCCCc---cCccceee
Confidence 468999999999999999987775 33221 1111111111234455666666666655555432 12256788
Q ss_pred eeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEccccc
Q 011505 174 FTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQA 253 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~ 253 (484)
..||.- +|.+ .++++++.|++.+. ++ ++=..|.||+.+++++. +.....=|-+|-|||+|+=.+.+-..
T Consensus 73 L~lSg~-d~e~------~~~~lv~~~R~~fp--s~-ae~~~v~sDa~~sl~a~-t~g~~~GiVLiaGTgs~crl~~~DGs 141 (336)
T KOG1794|consen 73 LGLSGT-DQED------KNRKLVTEFRDKFP--SV-AENFYVTSDADGSLAAA-TPGGEGGIVLIAGTGSNCRLVNPDGS 141 (336)
T ss_pred eecccC-Cchh------HHHHHHHHHHHhcc--ch-hheeeeehhHHHHHhhc-CCCCCCcEEEEecCCceeEEECCCCC
Confidence 888864 3332 23445555555542 11 23357999999999887 44445668899999999866665443
Q ss_pred ccCcCCCCCCCCcEEEeCCCC-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCC
Q 011505 254 IPKWHGVPSKSGEMVINMEWG-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDT 332 (484)
Q Consensus 254 i~k~~~~~~~~g~miIN~EwG-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~ 332 (484)
..+. +.-|||+= .|| .|+-. +|-+---+|.+- -||-|. .=-+.+...+.++. .
T Consensus 142 ~~~~----ggwg~~iG--d~GSaywia---~~Avq~vfda~d------g~e~~~---~~i~~v~~tif~~~--------~ 195 (336)
T KOG1794|consen 142 EKGA----GGWGHMIG--DGGSAYWIA---RQAVQMVFDAED------GFENMM---DKIKDVKQTIFKHF--------N 195 (336)
T ss_pred ccCC----CCCCCccC--CCcchhhhh---hhhhhheeehhc------Cccccc---chHHHHHHHHHHHc--------C
Confidence 3332 23345554 455 56532 232222233221 122221 11122344444331 2
Q ss_pred CCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011505 333 VPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRD 412 (484)
Q Consensus 333 ~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~ 412 (484)
+++++.- +...-.| .+........++ + .+.+++++++++.|+++|+..+|--+.+++..+.+.
T Consensus 196 l~d~l~m--------l~~~Ys~--f~k~riA~f~~k-l------a~~ae~Gd~~~~~ifr~Ag~~Lg~~V~aVl~~l~~~ 258 (336)
T KOG1794|consen 196 LRDRLQM--------LEHLYSD--FDKHRIALFTEK-L------AEHAEIGDPLSAEIFRNAGETLGRHVVAVLPQLPPT 258 (336)
T ss_pred CCCHHHH--------HHHHHhc--chHHHHHHHHHH-H------HhhhhccCHHHHHHHHHHHHHHHHHHHHHHhhcCch
Confidence 2222110 1111111 111111111111 0 134778899999999999999999999999999884
Q ss_pred CcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 413 AAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 413 ~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.. +....-|...|||+..++.+.+-....+... ..-+++++..-.+.|.+|||++||-..
T Consensus 259 ~k---~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~---~~f~~~~l~~~k~ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 259 LK---KGKTLPIVCVGGVFDSWDLLQEGFLDSLSDT---RGFERVELYRPKESSAVGAAILAASLD 318 (336)
T ss_pred hc---ccCcceEEEEcchhhHHHHHHHHHHHHhhcc---cCccceEEEeecccchHHHHHHhhhhc
Confidence 21 1134679999999999998888777766542 223468888888999999999998543
No 24
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=99.22 E-value=2.2e-09 Score=106.92 Aligned_cols=271 Identities=21% Similarity=0.254 Sum_probs=160.0
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeee
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFS 177 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFS 177 (484)
|+||.|||+.|+.+++.+|+ ++.+. ..-|.+......++..+.|.+-+.+.+++.+... .+...+.++.+
T Consensus 1 lGIDgGgTkt~~vl~d~~g~---il~~~---~~~~~n~~~~~~~~~~~~i~~~i~~~~~~~~~~~----~~i~~~~~g~a 70 (271)
T PF01869_consen 1 LGIDGGGTKTKAVLVDENGN---ILGRG---KGGGANYNSVGFEEAMENIKEAIEEALSQAGLSP----DDIAAICIGAA 70 (271)
T ss_dssp EEEEECSSEEEEEEEETTSE---EEEEE---EES-TTHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCCCEEEEEEE
T ss_pred CEEeeChheeeeEEEeCCCC---EEEEE---EeCCCCCCCCCcchhhhHHHHHHHHHHHHcCCCc----cccceeeeeEe
Confidence 79999999999999998775 55322 3345555433456677788888888887765431 11222323332
Q ss_pred eeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCc
Q 011505 178 FPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKW 257 (484)
Q Consensus 178 fPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~ 257 (484)
+--. ......+.+.+-+. + +.+.||+...+.+..- +.-|-+|-|||+++..+.+
T Consensus 71 G~~~-----------~~~~~~~~~~~~~~--~---v~~~~Da~~al~~~~~---~~giv~I~GTGS~~~~~~~------- 124 (271)
T PF01869_consen 71 GYGR-----------AGDEQEFQEEIVRS--E---VIVVNDAAIALYGATA---EDGIVVIAGTGSIAYGRDR------- 124 (271)
T ss_dssp EEEE-----------TTTTTHHHHHHHHH--E---EEEEEHHHHHHHHHST---SSEEEEEESSSEEEEEEET-------
T ss_pred eecC-----------cccccchhhcceEE--E---EEEEHHHHHHhCCCCC---CcEEEEEcCCCceEEEEEc-------
Confidence 2211 01111222222211 2 5699999888777644 4678899999999988762
Q ss_pred CCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCC
Q 011505 258 HGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKL 337 (484)
Q Consensus 258 ~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l 337 (484)
.|++.-.--||.|- ..- -||.++| |+.|....++-. +..++..
T Consensus 125 ------~g~~~r~gG~G~~~-----------------gD~--------GSg~~ig---~~~L~~~~~~~d---~~~~~~~ 167 (271)
T PF01869_consen 125 ------DGRVIRFGGWGHCL-----------------GDE--------GSGYWIG---RRALRAVLRELD---GRAEPTP 167 (271)
T ss_dssp ------TSEEEEEEESCTTT-----------------TTT--------TSHHHHH---HHHHHHHHHHHT---TSSTTSH
T ss_pred ------CCcEEEeCCCCCCc-----------------CCC--------CcHHHHH---HHHHhHHHHHhc---CccccCc
Confidence 34455555677552 111 2555654 455554443311 0111111
Q ss_pred CCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Q 011505 338 EVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDG 417 (484)
Q Consensus 338 ~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~ 417 (484)
..+ ......++.+ +..++ +.++..+.+|..|++++++.++.-+.+++.+.....
T Consensus 168 ~~~-~~~~~~~A~f----------a~~v~-----------~~a~~gd~~a~~Il~~a~~~la~~i~~~~~~~~~~~---- 221 (271)
T PF01869_consen 168 YAK-PASNARIAVF----------APTVF-----------EAAQQGDEVARDILAEAADELAELIKAVLKRLGPEK---- 221 (271)
T ss_dssp HHH-TT-HHHHHCT----------HHHHH-----------HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHTCTCCC----
T ss_pred ccC-CCChhheehh----------hHHHH-----------HHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 000 0011111111 11222 235667899999999999999999999999887632
Q ss_pred CCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHH
Q 011505 418 DKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLA 474 (484)
Q Consensus 418 ~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~A 474 (484)
..|.+-||++++.+ |++.+++.+++.+... ....+...+.-+.+|||++|
T Consensus 222 ----~~v~l~GGv~~~~~-~~~~l~~~l~~~~~~~--~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 222 ----EPVVLSGGVFKNSP-LVKALRDALKEKLPKV--PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp ----CSEEEESGGGGCHH-HHHHHGGGS-HHHHCC--TCECECCGSSHHHHHHHHHH
T ss_pred ----CeEEEECCccCchH-HHHHHHHHHHHhcCCC--ceEECCCCCccHHHHHHHhC
Confidence 22999999998765 5566777777665542 12344567888999999987
No 25
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=98.91 E-value=1.2e-07 Score=98.14 Aligned_cols=276 Identities=12% Similarity=0.070 Sum_probs=152.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHH---HHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIA---AELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia---~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+.|+|..|||++|+++++-++. +.++. ..++.-..++++...+.++ +.|.+++++++... .+...+
T Consensus 1 ~il~in~Gsts~k~alf~~~~~---~~~~~----~~~~~~~~~~~~~~~~q~~~r~~~i~~~l~~~~~~~----~~i~av 69 (351)
T TIGR02707 1 KILVINPGSTSTKLAVFEDERP---LFEET----LRHSVEELGRFKNVIDQFEFRKQVILQFLEEHGISI----SKLDAV 69 (351)
T ss_pred CEEEEecCchhheEEEEeCCCc---eeeee----ecCCHHHhcccccHHHHHHHHHHHHHHHHHHcCCCc----ccccEE
Confidence 3699999999999999987663 44321 1122111235567778888 88888998775431 122223
Q ss_pred eeeeeeeeeeeecCceE-EECccHHHHHH----------------HHHH-hcCCCceEEEEEec---------hHHHHhc
Q 011505 173 GFTFSFPVMQTSINTGT-LVGRDVVEELS----------------RAMA-KQGLDMSVSALVND---------TVGTLAG 225 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~-l~G~dv~~~L~----------------~al~-r~gl~v~v~alvND---------tvatlla 225 (484)
-.-..|++. ...|. ++..++.+.|+ ..+. ..++|. ++.|| +..+.+.
T Consensus 70 -~~RgG~~~~--v~Gg~~~v~~~~~~~l~~~~~~~~~hn~~~~~~~~~~~~~~~p~---~vfDt~fh~~~~~~a~~~alp 143 (351)
T TIGR02707 70 -VGRGGLLKP--IPGGTYLVNEAMLEDLKSGKRGEHASNLGAIIANELADELNIPA---YIVDPVVVDEMEDVARISGLP 143 (351)
T ss_pred -EECCCCCce--ecceeEEECHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHcCCCE---EEcCChhhhcChHHHHHhccc
Confidence 122333331 11122 12222222222 2221 236663 47777 4555453
Q ss_pred cc------------c----------cC--CCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCC
Q 011505 226 GR------------Y----------TN--KDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHL 281 (484)
Q Consensus 226 ~~------------y----------~~--~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~l 281 (484)
+. | .+ ....|.+.||||+++|.+.+++.+.+..+.+++.++|. +-+|..+
T Consensus 144 e~~RrygfHgls~~~v~~~~~~~~g~~~~~~~~I~~hLGtGig~~ai~~Gk~vdgs~G~agEg~~~~--tr~G~id---- 217 (351)
T TIGR02707 144 EIERKSIFHALNQKAVARRIAKELGKRYEEMNLIVAHMGGGISVAAHRKGRVIDVNNALDGEGPFSP--ERSGTLP---- 217 (351)
T ss_pred hhhhhhchhhhhHHHHHHHHHHHcCCCcccCCEEEEEeCCCceeeeEECCEEEEcCCCCCCcCCccc--CccCCCC----
Confidence 22 0 12 33899999999999999999998888777666544443 2233221
Q ss_pred CCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHH
Q 011505 282 SLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKV 361 (484)
Q Consensus 282 p~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~ 361 (484)
....... ..+.+. .+.| +...+.+...|.+- . .+.+
T Consensus 218 -~~~~~~~--~~~~~~--s~~e--------------l~~~l~~~sGl~~~------~--gs~d----------------- 253 (351)
T TIGR02707 218 -LGDLVDL--CYSGKY--TKEE--------------MKKKIVGNGGLVAY------L--GTND----------------- 253 (351)
T ss_pred -chhHHHH--HhcCCC--CHHH--------------HHHHHHhccCcccc------c--CCCC-----------------
Confidence 0000000 012221 1212 11112222222110 0 0011
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHH
Q 011505 362 VETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCL 441 (484)
Q Consensus 362 ~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l 441 (484)
.+++++. ++..++.|+.+++..++.++.+|++++..++++ +..|.++||+.+. +.|++.+
T Consensus 254 ~reI~~~-----------a~~GD~~A~~a~d~~~~~la~~Ia~l~~~l~g~--------pD~IV~gGGI~e~-~~l~~~I 313 (351)
T TIGR02707 254 AREVEKR-----------IEAGDEKAKLILDAMAYQIAKEIGKMAVVLKGK--------VDAIVLTGGLAYS-KYFVSEI 313 (351)
T ss_pred HHHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEcchhhcC-HHHHHHH
Confidence 2223222 334457888999999999999999999999431 1689999999874 6788999
Q ss_pred HHHHHHHhcccCCccEEEEEcCC
Q 011505 442 ENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 442 ~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.+.++.+. .|.+.++++
T Consensus 314 ~~~l~~~a------~v~~~pg~~ 330 (351)
T TIGR02707 314 IKRVSFIA------PVLVYPGED 330 (351)
T ss_pred HHHHHhhC------CEEEeCCcH
Confidence 99887753 465556543
No 26
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=98.82 E-value=8.7e-07 Score=90.43 Aligned_cols=288 Identities=18% Similarity=0.147 Sum_probs=157.2
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeee
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFS 177 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFS 177 (484)
|+-|+||||.|+++++..+...++... ++|+ ..+...|.+.+ .+|+++..... ..+....|...
T Consensus 1 Lv~DIGGTn~Rlal~~~~~~~~~~~~~--~~~~------~~~~~s~~~~l----~~~l~~~~~~~----~~p~~~~iavA 64 (316)
T PF02685_consen 1 LVADIGGTNTRLALAEPDGGPLQLIDI--RRYP------SADFPSFEDAL----ADYLAELDAGG----PEPDSACIAVA 64 (316)
T ss_dssp EEEEEETTEEEEEEEECTCGG-EEEEE--EEEE------GCCCCHHHHHH----HHHHHHTCHHH----TCEEEEEEEES
T ss_pred CeEEeCcccEEEEEEEcCCCCcccccc--EEEe------cCCcCCHHHHH----HHHHHhcccCC----CccceEEEEEe
Confidence 578999999999999987753222221 1222 22333444444 44554321111 23566888899
Q ss_pred eeeeeeecCceEEECcc---HHHHHHHHHHhcCCCceEEEEEechHHHHhccccc-------------C-CCcEEEEEEc
Q 011505 178 FPVMQTSINTGTLVGRD---VVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT-------------N-KDVVAAVILG 240 (484)
Q Consensus 178 fPv~q~~~~~G~l~G~d---v~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~-------------~-~~~~iglIlG 240 (484)
.|++ .++-.+.+.+ -.+.|++.| +++ -+.|+||=.|..++.-.. . .....=+=.|
T Consensus 65 GPV~---~~~~~lTN~~W~i~~~~l~~~l---g~~--~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~G 136 (316)
T PF02685_consen 65 GPVR---DGKVRLTNLPWTIDADELAQRL---GIP--RVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPG 136 (316)
T ss_dssp S-EE---TTCEE-SSSCCEEEHHHCHCCC---T-T--CEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEES
T ss_pred cCcc---CCEEEecCCCccccHHHHHHHh---CCc--eEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcC
Confidence 9998 5555552222 123334433 664 257999998877654431 1 2233333478
Q ss_pred cCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhh----ccCCCCCcceeeeccccccHHHHHH
Q 011505 241 TGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALD----AESLNPGEQIFEKMISGMYLGEIVR 316 (484)
Q Consensus 241 TG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD----~~s~npg~q~fEkm~SG~YLgei~R 316 (484)
||.|.|++.+. ..+..++-+|+|.-. .-|+|+.+.++= ..- +.=.+|..+||+.|..+.+
T Consensus 137 TGLG~a~l~~~-----------~~~~~v~~sEgGH~~--fap~~~~e~~l~~~l~~~~---~~vs~E~vlSG~GL~~ly~ 200 (316)
T PF02685_consen 137 TGLGVALLVPD-----------GDGYYVLPSEGGHVD--FAPRTDEEAELLRFLRRRY---GRVSVERVLSGRGLENLYR 200 (316)
T ss_dssp SSEEEEEEEEE-----------TTEEEEEEE-GGGSB-----SSHHHHHHHHHHHHHC---TS-BHHHCSSHHHHHHHHH
T ss_pred CCcEEEEEEec-----------CCceEeCCCcccccc--CCCCCHHHHHHHHHHHHhc---CCceeEeecchhhHHHHHH
Confidence 99999999863 235568999988543 246776665442 122 3348899999999976654
Q ss_pred HHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 011505 317 RVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGAR 396 (484)
Q Consensus 317 ~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~ 396 (484)
-.... . ..++ .......|.+.-. ..-+.+|...++...+
T Consensus 201 ~l~~~----~-----~~~~----------------------~~~~~~~I~~~A~----------~~~d~~a~~al~~f~~ 239 (316)
T PF02685_consen 201 FLAGE----R-----GAEP----------------------PLLSAAEISAAAL----------EGGDPLAREALDLFAR 239 (316)
T ss_dssp HHHCC----T-----T--S--------------------------HHHHHHHHH----------CT--HHHHHHHHHHHH
T ss_pred HHHhc----c-----CCCC----------------------CCCCHHHHHHHHH----------cCCCHHHHHHHHHHHH
Confidence 43211 0 0000 0012223322211 1234889999999999
Q ss_pred HHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHH--HHHHHHHHH--hccc-CCccEEEEEcCChhHHHHH
Q 011505 397 LAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSK--CLENTLEEL--LGEE-LFKNIVIEHSNDGSGIGAA 471 (484)
Q Consensus 397 l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~--~l~~~l~~l--~~~~-~~~~v~i~~~~Dgs~iGAA 471 (484)
+++.....+.-...+. --|=+.||+..+...+.+ ...+.+.+. ..+- ..-.|.++..++.+++|||
T Consensus 240 ~lg~~agdlaL~~~a~---------gGvyiaGGI~~~~~~~l~~~~F~~~F~~kg~~~~~l~~iPv~li~~~~~gL~Gaa 310 (316)
T PF02685_consen 240 ILGRVAGDLALTFLAR---------GGVYIAGGIAPRLLPLLDESAFREAFEDKGRMSDLLEDIPVYLITDPDAGLLGAA 310 (316)
T ss_dssp HHHHHHHHHHHHHT-T---------CEEEEE-TTGGGGHHHHHCSSHHHHHH--GGGHHHHTT--EEEE--S-HHHHHHH
T ss_pred HHHHHHHHHHHHhCCC---------eeEEEecchhhHHHHHcChhHHHHHHhccCCcHHHHhcCcEEEEeCCCHHHHHHH
Confidence 9999999999988873 346788988876655443 122222110 0000 1136778889999999999
Q ss_pred HHHH
Q 011505 472 LLAA 475 (484)
Q Consensus 472 l~Aa 475 (484)
..|.
T Consensus 311 ~~a~ 314 (316)
T PF02685_consen 311 AYAR 314 (316)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
No 27
>PRK03011 butyrate kinase; Provisional
Probab=98.54 E-value=7.3e-06 Score=85.06 Aligned_cols=284 Identities=13% Similarity=0.153 Sum_probs=157.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecC-CCccc-cCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIP-PHLMT-GTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip-~~~~~-~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
+.|+|+-|.|..|+++.+-. ..+..+. ...+ +++.. .+--+=++|=.+.|.+++++++.+. .+...+|
T Consensus 3 ~il~inpgststk~a~~~~~---~~~~~~~---~~h~~~~~~~~~~~~~q~~~r~~~i~~~l~~~g~~~----~~l~av~ 72 (358)
T PRK03011 3 RILVINPGSTSTKIAVFEDE---KPIFEET---LRHSAEELEKFKTIIDQYEFRKQAILDFLKEHGIDL----SELDAVV 72 (358)
T ss_pred EEEEEcCCCchheEEEEcCC---ceeeeec---cccCHHHHhcCCCccchHHHHHHHHHHHHHHcCCCh----hcceEEE
Confidence 58999999999999998522 2233221 2222 12211 1222446777788888998876432 1122221
Q ss_pred eeeeeeeeeeecCceEE-ECc----------------cHHHHHHHHHH-hcCCCceEEEEEec-----------------
Q 011505 174 FTFSFPVMQTSINTGTL-VGR----------------DVVEELSRAMA-KQGLDMSVSALVND----------------- 218 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l-~G~----------------dv~~~L~~al~-r~gl~v~v~alvND----------------- 218 (484)
.- ...++ .+..|+. ++. ++..++-..+. +.++| ++++|+
T Consensus 73 ~R-gG~~~--~v~gG~~~v~~~~~~~l~~~~~~~~~~nl~~~~a~~~~~~~~~p---~~v~D~~~~~~~~~~a~~~~lp~ 146 (358)
T PRK03011 73 GR-GGLLK--PIPGGTYRVNEAMLEDLKNGKYGEHASNLGAIIAYEIAKELGIP---AFIVDPVVVDEMEPVARISGLPE 146 (358)
T ss_pred Ec-CCCCc--ccCCCCEEcCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhcCCC---EEEECCcccccCCHHHHHcCCCC
Confidence 11 11111 0123322 112 33444433333 24677 467888
Q ss_pred ---------hHHHHhccccc-------CCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCC
Q 011505 219 ---------TVGTLAGGRYT-------NKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLS 282 (484)
Q Consensus 219 ---------tvatlla~~y~-------~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp 282 (484)
++--.++++|. +..+.|.+.+|||+.+|.+.+++.+.+..+.+++...| .+-+|.. |
T Consensus 147 i~R~~gfHgln~~~va~~~a~~~g~~~~~~n~I~~hLGtGig~gai~~Gk~idgs~g~agEG~~~--~~R~G~l-----~ 219 (358)
T PRK03011 147 IERKSIFHALNQKAVARRVAKELGKKYEELNLIVAHLGGGISVGAHRKGRVIDVNNALDGEGPFS--PERAGGL-----P 219 (358)
T ss_pred cceeecchHHhHHHHHHHHHHHhCCCcccCcEEEEEeCCCceeeEEECCEEEecCCccCCCCCcc--cCcccCc-----C
Confidence 55555555551 24589999999999999999998888766654321111 1112221 1
Q ss_pred CchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHH
Q 011505 283 LSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVV 362 (484)
Q Consensus 283 ~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~ 362 (484)
. + ...+.+-+|.|= ...+...+.+.+.+.+- + . +.+ .
T Consensus 220 ~--------------~-~~~~~~~~g~~s---~~~l~~~l~~~~Gl~~~-----~----------------g-s~d---~ 256 (358)
T PRK03011 220 V--------------G-DLVELCFSGKYT---KEELKKKLVGKGGLVAY-----L----------------G-TND---A 256 (358)
T ss_pred c--------------H-HHHHHHhcCCCC---HHHHHHHHHhccCcccc-----c----------------C-CCC---H
Confidence 1 1 112223334331 11122222323222110 0 0 011 2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHH
Q 011505 363 ETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLE 442 (484)
Q Consensus 363 ~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~ 442 (484)
+++++. ++..++.|+.++++.++.+|-+|++++..++.+ +..|+++||+.+ .+.|++.++
T Consensus 257 reV~~~-----------a~~GD~~A~~ald~~~~~lak~I~~l~~~L~gd--------pD~IVlgGGI~~-~~~l~~~I~ 316 (358)
T PRK03011 257 REVEKR-----------IEEGDEKAKLVYEAMAYQIAKEIGAMAAVLKGK--------VDAIVLTGGLAY-SKRLVERIK 316 (358)
T ss_pred HHHHHH-----------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCcccc-CHHHHHHHH
Confidence 223222 334457889999999999999999999999321 168999999987 899999999
Q ss_pred HHHHHHhcccCCccEEEEEcCCh---hHHHHH
Q 011505 443 NTLEELLGEELFKNIVIEHSNDG---SGIGAA 471 (484)
Q Consensus 443 ~~l~~l~~~~~~~~v~i~~~~Dg---s~iGAA 471 (484)
+.++.+ ..+.+.+++++ ...||+
T Consensus 317 ~~l~~~------~pv~i~p~~~e~~A~a~GA~ 342 (358)
T PRK03011 317 ERVSFI------APVIVYPGEDEMEALAEGAL 342 (358)
T ss_pred HHHHhh------CCeEEEeCCCHHHHHHHHHH
Confidence 998865 25777776555 455544
No 28
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=98.50 E-value=3e-07 Score=77.10 Aligned_cols=98 Identities=18% Similarity=0.238 Sum_probs=63.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.+|+||+|||++++++++.+|. +... ..+++. .+.+++++.+.+.+.++ . +..+|+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g~---~~~~----~~~~~~---~~~~~~~~~l~~~i~~~----~---------~~~i~Ig 58 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETGK---LADP----LEVIPR---TNKEADAARLKKLIKKY----Q---------PDLIVIG 58 (99)
T ss_pred cEEEEccCCCeEEEEEECCCCC---EecC----EEEEEe---cCcchHHHHHHHHHHHh----C---------CCEEEEe
Confidence 4899999999999999987664 4432 223321 13456677776666542 1 3568888
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhc
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAG 225 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla 225 (484)
+++|++...... +. .++.+.|++.+ ++|+ .++||+++|..+
T Consensus 59 ~pg~v~g~~~~~--~~-~~l~~~l~~~~---~~pv---~~~nDa~st~~a 99 (99)
T smart00732 59 LPLNMNGTASRE--TE-EAFAELLKERF---NLPV---VLVDERLATVYA 99 (99)
T ss_pred CCcCCCCCcCHH--HH-HHHHHHHHHhh---CCcE---EEEeCCcccccC
Confidence 888885221101 14 66777777665 7884 699999988643
No 29
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=4.6e-05 Score=76.22 Aligned_cols=278 Identities=18% Similarity=0.168 Sum_probs=162.8
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
.-+||+||=|||..|+.+-+.+|+ ++-+- ..=|.+..+...++-+.-|.+.|.+.+.+.+.++ ..++
T Consensus 4 ~~~~lGVDGGGTkt~a~l~~~~g~---vlg~g---~sGpAN~~~~~~e~A~~ni~~ai~~A~~~aG~~~-------~~i~ 70 (301)
T COG2971 4 MPYFLGVDGGGTKTRAVLADEDGN---VLGRG---KSGPANIQLVGKEEAVRNIKDAIREALDEAGLKP-------DEIA 70 (301)
T ss_pred ccEEEEEccCCcceEEEEEcCCCc---EEEEe---ccCCceecccchHHHHHHHHHHHHHHHHhcCCCH-------HHhC
Confidence 348999999999999998887775 55432 3447777665558889999999999998776432 2233
Q ss_pred eeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCce-EEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccc
Q 011505 174 FTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMS-VSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQ 252 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~-v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~ 252 (484)
+++-+--- .|.+.....+ .+ .+.+|.- -+-|+||+..+|.++...+. =+-+|.||| ++|+-.
T Consensus 71 ~~~agla~---------ag~~~~~~~~-~~-~~~l~~a~~v~v~~Dg~iAl~ga~~~~~--Gii~i~GTG--Si~~~~-- 133 (301)
T COG2971 71 AIVAGLAL---------AGANVEEARE-EL-ERLLPFAGKVDVENDGLIALRGALGDDD--GIIVIAGTG--SIGYGR-- 133 (301)
T ss_pred ceeeeeec---------cCcchhHHHH-HH-HHhcCccceEEEecChHHHHhhccCCCC--CEEEEecCC--eEEEEE--
Confidence 33221110 2344322222 12 2345543 46799999999998855432 234577777 444432
Q ss_pred cccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCC
Q 011505 253 AIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDT 332 (484)
Q Consensus 253 ~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~ 332 (484)
..+....-=.||.+= =--.||.+||.- +|.+...+ |.+.
T Consensus 134 ----------~gg~~~r~GG~Gf~I-------------------------gDegSga~ig~~---~L~~~lra---~DG~ 172 (301)
T COG2971 134 ----------KGGRRERVGGWGFPI-------------------------GDEGSGAWIGRE---ALQEALRA---FDGR 172 (301)
T ss_pred ----------eCCeeEEecCcCccc-------------------------cccchHHHHHHH---HHHHHHHH---hcCC
Confidence 112333333677542 112588899744 33333221 1111
Q ss_pred CCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 333 VPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISS--------TSLSMRKTIVELCNIVATRGARLAAAGILG 404 (484)
Q Consensus 333 ~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~--------~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaa 404 (484)
.+ .-.|....+..+.. |.+.+....... +..+ .-.+.++..+.++..|+++||.+++..+-+
T Consensus 173 ~~-----~t~L~d~v~~~f~~----d~edlv~~~y~a-~~~~~~ia~lap~V~~~A~~GD~~A~~Il~~aa~~i~~~~~~ 242 (301)
T COG2971 173 RE-----ATPLTDAVMAEFNL----DPEDLVAFIYKA-GPGDKKIAALAPAVFEAARKGDPVAIRILKEAAAYIATLLEA 242 (301)
T ss_pred cc-----CChHHHHHHHHhCC----CHHHHHHHHHhc-CCchHHHHHhhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 11 11244444444432 233333332220 1100 012567888999999999999777776666
Q ss_pred HHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHH
Q 011505 405 VLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAA 475 (484)
Q Consensus 405 ii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa 475 (484)
+....+. ..+.+-||+++.++.|.+.+++.+. .+ . .+--..||.++|.
T Consensus 243 l~~~~g~----------~~l~l~GG~~~~~~~~~~~~~~~l~---~~-----~-----~~D~~~GA~~~A~ 290 (301)
T COG2971 243 LSIFNGS----------EKLSLLGGLAPSYPYYLSLFRRALL---VP-----P-----IGDALSGAVLLAL 290 (301)
T ss_pred HhcccCC----------ceEEEeccccccchhhHHHHHHHhc---CC-----c-----cccHHHHHHHHHH
Confidence 5432232 6899999999999999999988542 22 1 3445678877774
No 30
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=97.75 E-value=0.0082 Score=65.30 Aligned_cols=60 Identities=12% Similarity=0.267 Sum_probs=42.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeee--cCC-CccccCcchhHHHHHHHHHHHHhhc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVS--IPP-HLMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~--ip~-~~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
++|+||+|+|++|+++++.+|+ ++...+.+++ .|. .....+.+++++.+.+++++.+++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~~ 63 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEENGK---IVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSINL 63 (505)
T ss_pred CEEEEeccccceEEEEEcCCCC---EEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999998775 5554443333 111 1223357789999999999998754
No 31
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=0.019 Score=57.61 Aligned_cols=182 Identities=20% Similarity=0.215 Sum_probs=107.9
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
...|+=|+||||-|+++|.....+ ..+ + +.+...+ |..+.+.|++|+.++.. ..+..--|
T Consensus 6 ~p~LvgDIGGTnaRfaLv~~a~~~--~~~-------~-~~~~~~d----ypsle~av~~yl~~~~~------~~~~~a~~ 65 (320)
T COG0837 6 YPRLVGDIGGTNARFALVEIAPAE--PLQ-------A-ETYACAD----YPSLEEAVQDYLSEHTA------VAPRSACF 65 (320)
T ss_pred CceEEEecCCcceEEEEeccCCCC--ccc-------c-ceecccC----cCCHHHHHHHHHHHhhc------cCccceEE
Confidence 345666999999999999875431 111 0 1121111 44566777777776621 23455777
Q ss_pred eeeeeeeeeecCceEEECccHH---HHHHHHHHhcCCCceEEEEEechHHHHhcccccC-------------CCcEEEEE
Q 011505 175 TFSFPVMQTSINTGTLVGRDVV---EELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN-------------KDVVAAVI 238 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l~G~dv~---~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~-------------~~~~iglI 238 (484)
..-.|++ -+.-.+.+.|-+ +.+.+.| |++ =+.|+||=.+..++-.... ++-- =.|
T Consensus 66 AiAgPv~---gd~v~lTN~~W~~s~~~~r~~L---gl~--~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~-~av 136 (320)
T COG0837 66 AIAGPID---GDEVRLTNHDWVFSIARMRAEL---GLD--HLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAP-RAV 136 (320)
T ss_pred EEecCcc---CCEEeeecCcccccHHHHHHhc---CCC--cEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCc-eEE
Confidence 7788886 333333444421 2333444 664 2579999999888766531 1222 234
Q ss_pred E--ccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhcc-CCCCCcceeeeccccccHHHHH
Q 011505 239 L--GTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAE-SLNPGEQIFEKMISGMYLGEIV 315 (484)
Q Consensus 239 l--GTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~-s~npg~q~fEkm~SG~YLgei~ 315 (484)
+ |||-+.|+..+.. .+...+-+|.|.- +.-|+|+-|.+|=+. ..+-|.-.-|...||+-|-.|-
T Consensus 137 lGPGTGLGVa~Lv~~~-----------~~w~~lp~EGGHv--df~P~~~~E~~i~~~l~~~~GrVS~Er~LSG~GL~~iY 203 (320)
T COG0837 137 LGPGTGLGVAGLVPNG-----------GGWIPLPGEGGHV--DFAPRSEREFQILEYLRARFGRVSAERVLSGPGLVNLY 203 (320)
T ss_pred EcCCCCcceEEEEecC-----------CeeEeccCCCccc--cCCCCCHHHHHHHHHHHHhcCccchhhhcccccHHHHH
Confidence 5 5566778776532 2356677786643 235888888876432 2234556789999999997665
Q ss_pred HHH
Q 011505 316 RRV 318 (484)
Q Consensus 316 R~i 318 (484)
|-+
T Consensus 204 ~al 206 (320)
T COG0837 204 RAL 206 (320)
T ss_pred HHH
Confidence 544
No 32
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.51 E-value=0.025 Score=61.57 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=44.9
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCC---ccccCcchhHHHHHHHHHHHHhhc
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPH---LMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
.++|+||+|.|+.|+.+++.++ ..++......+..... ....+.++++..+.+.|++.+++.
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~~--~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~~ 68 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDEDG--GEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEES 68 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCCC--CeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999984 1255443322332211 223468999999999999999875
No 33
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=97.48 E-value=0.065 Score=57.75 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHH
Q 011505 390 VATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIG 469 (484)
Q Consensus 390 V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iG 469 (484)
+..+...-.|-|.-.|+..+.... ..-.+|-+-||. .++|.+.+.+-.... +.+.+..+++...+|
T Consensus 406 lY~a~l~a~A~GtR~Iie~~~~~g-----~~Id~l~~sGG~-~KN~llmql~aDvtg--------~~v~i~~s~~a~llG 471 (544)
T COG1069 406 LYRALLEATAFGTRAIIETFEDQG-----IAIDTLFASGGI-RKNPLLMQLYADVTG--------RPVVIPASDQAVLLG 471 (544)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHcC-----CeeeEEEecCCc-ccCHHHHHHHHHhcC--------CeEEeecccchhhhH
Confidence 344555667788888888886531 233678888888 999998887766542 478888899999999
Q ss_pred HHHHHHHhc
Q 011505 470 AALLAASHS 478 (484)
Q Consensus 470 AAl~Aa~~~ 478 (484)
+|+++|+++
T Consensus 472 sAm~~avAa 480 (544)
T COG1069 472 AAMFAAVAA 480 (544)
T ss_pred HHHHHHHHh
Confidence 999999877
No 34
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=97.34 E-value=0.074 Score=57.22 Aligned_cols=76 Identities=20% Similarity=0.302 Sum_probs=52.3
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec---CCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI---PPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i---p~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
|+||+|.|++|+++++++|+ ++.+.+..++. ++.....+.+++++.+++++++++++.+.. ..+...+|+
T Consensus 1 lgIDiGtt~ik~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~~~~~----~~~I~gIgv 73 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQGE---VIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQASEM----GQDIKGIGI 73 (481)
T ss_pred CceeecCcceEEEEECCCCC---EEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHhcCCC----cccEEEEEE
Confidence 58999999999999998885 66443322321 111113357889999999999999876532 234566777
Q ss_pred e--eeeee
Q 011505 175 T--FSFPV 180 (484)
Q Consensus 175 t--FSfPv 180 (484)
+ -+.++
T Consensus 74 s~~~~g~v 81 (481)
T TIGR01312 74 SGQMHGLV 81 (481)
T ss_pred ecCCceeE
Confidence 7 66666
No 35
>PRK00976 hypothetical protein; Provisional
Probab=97.11 E-value=0.002 Score=65.67 Aligned_cols=79 Identities=20% Similarity=0.216 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
++..+..|+.++++.++.+|.+|++++..++| ..|.++||+.+..+. .+.+.+++.+.+ . .-
T Consensus 233 A~~GD~~A~~aid~~~~~LA~~IAnLi~llDP----------e~IVLGGGVS~~~e~---~L~~~I~e~l~~----~-~a 294 (326)
T PRK00976 233 YEKGDEKAKLAIDTLALFVAMEIASLLLLNPE----------DNVVLAGSVGEMDEP---DVSERIKELLDK----K-VL 294 (326)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CEEEEcCccccCchh---HHHHHHHHHhcc----c-cc
Confidence 44456789999999999999999999999988 689999999976533 355555554433 1 35
Q ss_pred EEcCChhHHHHHHHHHH
Q 011505 460 EHSNDGSGIGAALLAAS 476 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~ 476 (484)
.+.++++.+|||++|.-
T Consensus 295 ~LG~dAGaiGAA~iA~~ 311 (326)
T PRK00976 295 VLGKESAAIGLALIARD 311 (326)
T ss_pred ccCCchHHHHHHHHHHH
Confidence 56899999999998853
No 36
>PRK13318 pantothenate kinase; Reviewed
Probab=96.88 E-value=0.011 Score=58.65 Aligned_cols=122 Identities=17% Similarity=0.139 Sum_probs=65.5
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeee
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTF 176 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftF 176 (484)
+|+||+|||++|+++++ ++ ++.. .+.+|+... .+.+++++ .+.++++..+.+. .+...+|+++
T Consensus 2 iL~IDIGnT~iK~al~d-~g---~i~~----~~~~~t~~~-~~~~~~~~----~l~~l~~~~~~~~----~~i~~I~iss 64 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE-GG---KLVA----HWRISTDSR-RTADEYGV----WLKQLLGLSGLDP----EDITGIIISS 64 (258)
T ss_pred EEEEEECCCcEEEEEEE-CC---EEEE----EEEEeCCCC-CCHHHHHH----HHHHHHHHcCCCc----ccCceEEEEE
Confidence 68999999999999998 44 2443 245666542 23445444 4455555443211 1223344443
Q ss_pred eeeeeeeecCceEEECccHHHHHHHHHHhc-----------CCCceEEEEEec--------hHHHHhcccccCCCcEEEE
Q 011505 177 SFPVMQTSINTGTLVGRDVVEELSRAMAKQ-----------GLDMSVSALVND--------TVGTLAGGRYTNKDVVAAV 237 (484)
Q Consensus 177 SfPv~q~~~~~G~l~G~dv~~~L~~al~r~-----------gl~v~v~alvND--------tvatlla~~y~~~~~~igl 237 (484)
=-|-. ...+...++..+... +++ +.+.|| ..+..+.+.|.. ..+-+
T Consensus 65 Vvp~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~gl~---~~y~np~~lG~DR~a~~~aa~~~~~~--~~ivi 129 (258)
T PRK13318 65 VVPSV----------MHSLERMCRKYFNIEPLVVVGPGVKTGIN---IKVDNPKEVGADRIVNAVAAYELYGG--PLIVV 129 (258)
T ss_pred ecCch----------HHHHHHHHHHHhCCCCeEEECCCcCCCCc---eecCChhhcchHHHHHHHHHHHHcCC--CEEEE
Confidence 11321 011222233222100 122 457787 455555555543 67889
Q ss_pred EEccCcceEEEcc
Q 011505 238 ILGTGSNAAYVER 250 (484)
Q Consensus 238 IlGTG~Na~yie~ 250 (484)
-+||++...++.+
T Consensus 130 d~GTA~t~d~v~~ 142 (258)
T PRK13318 130 DFGTATTFDVVSA 142 (258)
T ss_pred EcCCceEEEEEcC
Confidence 9999999988853
No 37
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=96.87 E-value=0.0038 Score=61.06 Aligned_cols=61 Identities=18% Similarity=0.329 Sum_probs=43.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCC---ccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPH---LMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
+||+||+|.||+|+++++.+|+ ++...+..++.... ...-+.+++++.+.+++++.+++.+
T Consensus 1 y~lgiDiGTts~K~~l~d~~g~---iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~ 64 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDGK---IVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQAG 64 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTSC---EEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHHCT
T ss_pred CEEEEEEcccceEEEEEeCCCC---EEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhhcC
Confidence 5899999999999999997665 55544433332221 2233688999999999999998763
No 38
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=96.37 E-value=0.22 Score=49.08 Aligned_cols=94 Identities=13% Similarity=0.173 Sum_probs=54.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++++||+|.|+.|+++++ +++ ++...+ .+ .+..++-.++.+.+.+++.+.+. .+...+|+|
T Consensus 1 ~~lGIDiGtts~K~vl~d-~g~---il~~~~----~~-------~~~~~~~~~~~l~~~~~~~~~~~----~~i~~i~~T 61 (248)
T TIGR00241 1 ISLGIDSGSTTTKMVLME-DGK---VIGYKW----LD-------TTPVIEETARAILEALKEAGIGL----EPIDKIVAT 61 (248)
T ss_pred CEEEEEcChhheEEEEEc-CCE---EEEEEE----ec-------CCCCHHHHHHHHHHHHHHcCCCh----hheeEEEEE
Confidence 478999999999999997 553 554321 22 22345666777888776544321 223333332
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEE
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVA 235 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~i 235 (484)
.-.. .++. + .+ ..+|..++...+..|..|++..
T Consensus 62 --g~~~------------~~v~-----~--~~------~~~~ei~~~~~g~~~~~~~~~~ 94 (248)
T TIGR00241 62 --GYGR------------HKVG-----F--AD------KIVTEISCHGKGANYLAPEARG 94 (248)
T ss_pred --CCCc------------cccc-----c--cC------CceEEhhHHHHHHHHHCCCCCE
Confidence 2211 1111 0 01 2567888888888887777654
No 39
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=95.95 E-value=0.53 Score=49.61 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.1
Q ss_pred CCCceeeEEEEEeCCceEEEEEEE
Q 011505 90 TGDEKGTYYALDLGGTNFRVLRVH 113 (484)
Q Consensus 90 ~G~E~G~~laiDlGGTnlRv~~V~ 113 (484)
.+..+|.+++||+|+|+.++.+++
T Consensus 139 ~~~~~g~~lGIDiGSTttK~Vl~d 162 (404)
T TIGR03286 139 RERQEGLTLGIDSGSTTTKAVVME 162 (404)
T ss_pred hhccCCEEEEEEcChhheeeEEEc
Confidence 456778999999999999999986
No 40
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.67 E-value=0.028 Score=60.93 Aligned_cols=73 Identities=16% Similarity=0.288 Sum_probs=48.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CCC-ccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PPH-LMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~~-~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
++|+||+|+|++|+++++.+|+ ++...+..++. |.. ...-+.+++++.+.+++++.+++.+.. +.++..|
T Consensus 2 ~~lgiDiGtt~iKa~l~d~~g~---~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~----~~~i~aI 74 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDKDGN---IVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKAGIK----PDDIAAI 74 (493)
T ss_pred eEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCCC----hhheeEE
Confidence 5899999999999999998775 55443332321 211 112256789999999999999876532 1234555
Q ss_pred eee
Q 011505 173 GFT 175 (484)
Q Consensus 173 Gft 175 (484)
|++
T Consensus 75 gis 77 (493)
T TIGR01311 75 GIT 77 (493)
T ss_pred EEe
Confidence 554
No 41
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=95.65 E-value=0.033 Score=61.26 Aligned_cols=73 Identities=16% Similarity=0.341 Sum_probs=49.8
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
+|+||+|+|+.|+++++.+|+ ++...+.+++. |. .....+.+++++-+.+++++.+++.+.. ..++..||
T Consensus 2 ~lgID~GTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~----~~~I~~Ig 74 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTGD---ILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAESKVD----PNSVKGIG 74 (541)
T ss_pred EEEEEecCcCEEEEEEcCCCC---EEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHHcCCC----hhheEEEE
Confidence 789999999999999998775 55443333332 22 1223467889999999999999875432 12345566
Q ss_pred eee
Q 011505 174 FTF 176 (484)
Q Consensus 174 ftF 176 (484)
++.
T Consensus 75 is~ 77 (541)
T TIGR01315 75 FDA 77 (541)
T ss_pred ecc
Confidence 654
No 42
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=95.62 E-value=0.74 Score=51.94 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|.-..+--+|. .-+-. ...-..+|-++||. ..|..++.+++.+. .. .+.-
T Consensus 322 R~efe~l~~~l~~r~~~~v~~~L~----~a~~~----~~dId~VvLVGGss--riP~V~~~l~~~fg----~~---~~~~ 384 (657)
T PTZ00186 322 RSKFEGITQRLIERSIAPCKQCMK----DAGVE----LKEINDVVLVGGMT--RMPKVVEEVKKFFQ----KD---PFRG 384 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCC----hhhCCEEEEECCcc--cChHHHHHHHHHhC----CC---cccc
Confidence 666778888888888777655542 22211 00112567777776 67888877777653 21 1222
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
...+..-.+|||+.|++.+
T Consensus 385 ~nPdeaVA~GAAi~a~~l~ 403 (657)
T PTZ00186 385 VNPDEAVALGAATLGGVLR 403 (657)
T ss_pred CCCchHHHHhHHHHHHHhc
Confidence 2345677899999998655
No 43
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.36 E-value=0.043 Score=59.62 Aligned_cols=73 Identities=16% Similarity=0.257 Sum_probs=49.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeee--cCCC-ccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVS--IPPH-LMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~--ip~~-~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
++|+||+|+|++|+++++.+|+ ++...+.+++ .|.. ....+.+++++-+.+++++.+++.+... .+...|
T Consensus 6 ~~lgiD~GTts~Ka~l~d~~g~---~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~~~~~~----~~I~~I 78 (498)
T PRK00047 6 YILALDQGTTSSRAIIFDHDGN---IVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAKAGISP----DQIAAI 78 (498)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcCCCh----hHeeEE
Confidence 6899999999999999998775 4444333333 2221 1123578899999999999987654321 234555
Q ss_pred eee
Q 011505 173 GFT 175 (484)
Q Consensus 173 Gft 175 (484)
|++
T Consensus 79 gis 81 (498)
T PRK00047 79 GIT 81 (498)
T ss_pred EEe
Confidence 554
No 44
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.33 E-value=0.047 Score=59.66 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=44.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecC-----CCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIP-----PHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip-----~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
++|+||+|.|+.|+++++.+|+ ++...+.+++.+ +....-+.+++++.+.+++++.+++.+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G~---~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~~~ 69 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNGN---QIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQKAG 69 (520)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998775 554443334322 122233578899999999999987654
No 45
>PRK13317 pantothenate kinase; Provisional
Probab=95.23 E-value=3.9 Score=41.19 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=30.5
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEE-EEEcCChhHHHHHHHHH
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIV-IEHSNDGSGIGAALLAA 475 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~-i~~~~Dgs~iGAAl~Aa 475 (484)
..|.+.||...++|.+++.+.++++. .. .++. .....-.+.+|||+.+.
T Consensus 224 ~~Ivf~G~gla~n~~l~~~l~~~l~~--~~---~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 224 ENIVYIGSTLTNNPLLQEIIESYTKL--RN---CTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CeEEEECcccccCHHHHHHHHHHHhc--CC---ceEEecCCCchhHHHHHHHHhh
Confidence 36888887667899998888876541 11 1222 22344556677777653
No 46
>PRK13321 pantothenate kinase; Reviewed
Probab=95.23 E-value=0.2 Score=49.70 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=31.0
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELA 152 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~ 152 (484)
+|+||+|||++|+++++ ++ ++.. .+.+|+... .+.+++++.+.+.+.
T Consensus 2 iL~IDIGnT~ik~gl~~-~~---~i~~----~~~~~T~~~-~~~~~~~~~l~~l~~ 48 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GD---RLLR----SFRLPTDKS-RTSDELGILLLSLFR 48 (256)
T ss_pred EEEEEECCCeEEEEEEE-CC---EEEE----EEEEecCCC-CCHHHHHHHHHHHHH
Confidence 68999999999999998 33 2442 256676543 244566655555443
No 47
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.20 E-value=0.05 Score=59.69 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred eEEEEEeCCceEEEEEEE-eCCCcceeEEeeeeeeec-------C-------CCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVH-LGGKGVGLINQEFAEVSI-------P-------PHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~-l~g~~~~i~~~~~~~~~i-------p-------~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
++|+||+|.|+.|+++++ .+|+ ++...+.++++ | .....-+++++++-+.+++++.+++.+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G~---~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~~~ 77 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATGE---EIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAELG 77 (536)
T ss_pred eEEEEecCCCceEEEEEECCCCc---EeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHHcC
Confidence 589999999999999999 7885 55444444542 3 233344688999999999999988754
No 48
>PRK13410 molecular chaperone DnaK; Provisional
Probab=95.18 E-value=1.1 Score=50.58 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|.-+++|...++-.+|. .-+-. ...-..+|.++||. ..|..++.+++.+ +... ...+
T Consensus 297 R~~FE~l~~~l~~r~~~~i~~~L~----~ag~~----~~dId~VvLVGGss--RiP~V~~~l~~~f----g~~~--~~~~ 360 (668)
T PRK13410 297 RKQFESLCGDLLDRLLRPVKRALK----DAGLS----PEDIDEVVLVGGST--RMPMVQQLVRTLI----PREP--NQNV 360 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCC----hhhCcEEEEECCcc--ccHHHHHHHHHHc----CCCc--ccCC
Confidence 666778888888887766655442 22210 00012566777765 5788777777654 3211 1111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
-.+.+-.+|||+.|+..+
T Consensus 361 -npdeaVA~GAAi~aa~ls 378 (668)
T PRK13410 361 -NPDEVVAVGAAIQAGILA 378 (668)
T ss_pred -CCchHHHHhHHHHHHhhc
Confidence 245678899999998755
No 49
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=95.17 E-value=0.54 Score=52.97 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|....+-..| ...+... ..-..++.++||. ..|..++.+++.+.. ... ..-
T Consensus 301 R~~fe~l~~~l~~~~~~~i~~~L----~~a~~~~----~~i~~ViLvGGss--riP~v~~~i~~~f~~---~~~---~~~ 364 (653)
T PTZ00009 301 RARFEELCGDYFRNTLQPVEKVL----KDAGMDK----RSVHEVVLVGGST--RIPKVQSLIKDFFNG---KEP---CKS 364 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCH----HHCcEEEEECCCC--CChhHHHHHHHHhCC---CCC---CCC
Confidence 56667788888888776654443 3222210 0012456666654 688888887766531 110 111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 011505 460 EHSNDGSGIGAALLAASHSK 479 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~~ 479 (484)
.-.+.+-..|||+.|+..+.
T Consensus 365 ~npdeaVA~GAa~~aa~ls~ 384 (653)
T PTZ00009 365 INPDEAVAYGAAVQAAILTG 384 (653)
T ss_pred CCcchHHhhhhhhhHHHhcC
Confidence 12466778899999987653
No 50
>PRK15027 xylulokinase; Provisional
Probab=95.14 E-value=0.062 Score=58.15 Aligned_cols=71 Identities=17% Similarity=0.379 Sum_probs=49.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+||+||+|.|++|+++++..|+ ++...+..+++ | .....-+.+++++.+.+++++.+++... +++..|
T Consensus 1 ~~lgID~GTts~Ka~l~d~~G~---vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~~~~------~~I~aI 71 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNEQGE---VVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL------QDVKAL 71 (484)
T ss_pred CEEEEEecccceEEEEEcCCCC---EEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHhCCc------cceeEE
Confidence 4899999999999999998775 66555444543 2 1222345778999999999999876421 235556
Q ss_pred eee
Q 011505 173 GFT 175 (484)
Q Consensus 173 Gft 175 (484)
|++
T Consensus 72 ~is 74 (484)
T PRK15027 72 GIA 74 (484)
T ss_pred EEe
Confidence 664
No 51
>PRK10331 L-fuculokinase; Provisional
Probab=94.72 E-value=0.094 Score=56.54 Aligned_cols=60 Identities=23% Similarity=0.273 Sum_probs=42.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeee--c--C-CCccccCcchhHHHHHHHHHHHHhhc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVS--I--P-PHLMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~--i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
++|+||+|.|+.|+++++.+|+ ++...+..++ + | .....-+.+++++.+.+++++.+++.
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~G~---~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~~ 67 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQGK---IVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSEL 67 (470)
T ss_pred eEEEEecCCCceEEEEEcCCCc---EEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhC
Confidence 6899999999999999998875 5544433332 1 1 11223357789999999999998753
No 52
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=94.37 E-value=3.9 Score=42.62 Aligned_cols=101 Identities=21% Similarity=0.306 Sum_probs=60.0
Q ss_pred CCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 91 GDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 91 G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
....+.+|+||.|-|+.++.+++-++. +... |-.++. +.+. -.+.+.+.+++-+... .+..
T Consensus 131 ~~~~~~~LGID~GSTtTK~VLm~d~~~---I~~~----~~~~t~-----g~p~---~~~~l~~~le~l~~~~----~~I~ 191 (396)
T COG1924 131 EYQGMYTLGIDSGSTTTKAVLMEDGKE---ILYG----FYVSTK-----GRPI---AEKALKEALEELGEKL----EEIL 191 (396)
T ss_pred hhcCcEEEEEecCCcceeEEEEeCCCe---EEEE----EEEcCC-----CChh---HHHHHHHHHHHcccCh----heee
Confidence 344568999999999999999876552 4432 333332 1222 2455555555443221 2234
Q ss_pred eeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcE
Q 011505 171 ELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVV 234 (484)
Q Consensus 171 ~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~ 234 (484)
.+|+| | -|+ .++..+| +.+ ..+|-+++...+..|..|+..
T Consensus 192 ~~~~T------------G--YGR---~~v~~~~---~aD----~~~~Ei~ah~kgA~~f~p~~d 231 (396)
T COG1924 192 GLGVT------------G--YGR---NLVGAAL---GAD----KVVVEISAHAKGARYFAPDVD 231 (396)
T ss_pred eeeee------------c--ccH---HHhhhhh---cCC----cceeeeehhHHHHHHhCCCCc
Confidence 44443 1 234 3345555 555 578899999999999877665
No 53
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=94.28 E-value=0.35 Score=53.50 Aligned_cols=82 Identities=22% Similarity=0.303 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+..+|.-+++|...++-..| +..+... ..-..++.++|+ ...|.+++.+++.+. . .+..
T Consensus 297 r~~fe~l~~~~~~~~~~~i~~~l----~~~~~~~----~~i~~V~lvGG~--sr~p~v~~~l~~~f~----~----~~~~ 358 (602)
T PF00012_consen 297 REEFEELCEPLLERIIEPIEKAL----KDAGLKK----EDIDSVLLVGGS--SRIPYVQEALKELFG----K----KISK 358 (602)
T ss_dssp HHHHHHHTHHHHHHTHHHHHHHH----HHTT--G----GGESEEEEESGG--GGSHHHHHHHHHHTT----S----EEB-
T ss_pred cceeccccccccccccccccccc----ccccccc----cccceeEEecCc--ccchhhhhhhhhccc----c----cccc
Confidence 55566777788888777665444 3222110 001134555554 478888777776543 1 1111
Q ss_pred -EEcCChhHHHHHHHHHHhcc
Q 011505 460 -EHSNDGSGIGAALLAASHSK 479 (484)
Q Consensus 460 -~~~~Dgs~iGAAl~Aa~~~~ 479 (484)
.-.+.+-..|||+.|++.+.
T Consensus 359 ~~~p~~aVA~GAa~~a~~~~~ 379 (602)
T PF00012_consen 359 SVNPDEAVARGAALYAAILSG 379 (602)
T ss_dssp SS-TTTHHHHHHHHHHHHHHT
T ss_pred ccccccccccccccchhhhcc
Confidence 12467778999999987664
No 54
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=94.20 E-value=0.13 Score=55.91 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=43.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
.+|+||+|.|++|+++++.+|+ ++...+..++. | +....-+.+++++-+.+++.+.+++..
T Consensus 3 ~~lgiDiGTts~Ka~l~d~~G~---~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~~~ 66 (504)
T PTZ00294 3 YIGSIDQGTTSTRFIIFDEKGN---VVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLR 66 (504)
T ss_pred EEEEEecCCCceEEEEECCCCC---EEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999998775 55444433331 1 112233577899999999999987654
No 55
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=94.05 E-value=0.14 Score=55.05 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=42.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec----C-CCccccCcchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI----P-PHLMTGTSDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i----p-~~~~~~~~~~lfd~Ia~~i~~fl~~ 157 (484)
.+|+||+|.|+.|+++++.+|+ ++.+.+.+++. | +....-+.+++++.+.+++++.+.+
T Consensus 2 ~ilgiD~GTss~K~~l~d~~g~---~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~ 65 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQGK---IVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE 65 (465)
T ss_pred eEEEEecCCCcEEEEEEcCCCC---EEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh
Confidence 4799999999999999998775 55444333321 1 1122335778999999999999864
No 56
>PRK04123 ribulokinase; Provisional
Probab=93.97 E-value=0.17 Score=55.72 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=42.6
Q ss_pred eEEEEEeCCceEEEEEEEe-CCCcceeEEeeeeeeec--------CC-CccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHL-GGKGVGLINQEFAEVSI--------PP-HLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l-~g~~~~i~~~~~~~~~i--------p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
++|+||+|.|+.|+.+++. +|+ ++.+.+.+++. |. ....-+++++++-+.+++++.+++.+
T Consensus 4 ~~lgiD~GTts~Ka~l~d~~~g~---~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~~~ 74 (548)
T PRK04123 4 YVIGLDFGTDSVRALLVDCATGE---ELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKEAG 74 (548)
T ss_pred EEEEEecCCCceEEEEEECCCCc---EeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999995 775 45444333431 11 11123467789999999999887654
No 57
>PLN03184 chloroplast Hsp70; Provisional
Probab=93.92 E-value=3.3 Score=46.92 Aligned_cols=82 Identities=17% Similarity=0.267 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|.-+++|....+-.+| ...+... ..-..++-++||. .-|..++.+++.+ +... ...
T Consensus 334 R~~fe~l~~~l~~r~~~~i~~~L----~~a~~~~----~dId~ViLvGGss--riP~V~~~i~~~f----g~~~--~~~- 396 (673)
T PLN03184 334 RAKFEELCSDLLDRCKTPVENAL----RDAKLSF----KDIDEVILVGGST--RIPAVQELVKKLT----GKDP--NVT- 396 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh----hHccEEEEECCcc--ccHHHHHHHHHHh----CCCc--ccc-
Confidence 56677888888888766555443 2222210 0012566777766 5788887777765 3211 111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
...+.+-..|||+.|++.+
T Consensus 397 ~npdeaVA~GAAi~aa~ls 415 (673)
T PLN03184 397 VNPDEVVALGAAVQAGVLA 415 (673)
T ss_pred cCcchHHHHHHHHHHHHhc
Confidence 2346777899999998755
No 58
>PLN02295 glycerol kinase
Probab=93.54 E-value=0.18 Score=54.95 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=44.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhccc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESE 160 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~ 160 (484)
.+|+||+|.|++|+++++.+|+ ++...+.++++ |+ ....-+++++++-+.++|++.+++.+.
T Consensus 1 ~vlgID~GTts~Ka~l~d~~G~---~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~~~~ 65 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDRDAR---PVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAA 65 (512)
T ss_pred CEEEEecCCCceEEEEECCCCC---EEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHHcCC
Confidence 4799999999999999998775 55443333332 21 222346788999999999999987653
No 59
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=92.93 E-value=2.9 Score=46.51 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|...++--.| ...+... ..-..++-++||. .-|..++.+++.+. ... ...
T Consensus 293 r~~fe~l~~~l~~~~~~~i~~~l----~~a~~~~----~~i~~V~LvGGss--riP~v~~~i~~~f~----~~~--~~~- 355 (595)
T TIGR02350 293 RAKFEELTADLVERTKEPVRQAL----KDAGLSA----SDIDEVILVGGST--RIPAVQELVKDFFG----KEP--NKS- 355 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCH----hHCcEEEEECCcc--cChHHHHHHHHHhC----Ccc--cCC-
Confidence 66667788888888776665444 2222110 0012456666655 58888888777653 211 111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
...+.+-..|||+.|++.+
T Consensus 356 ~~pdeava~GAa~~aa~l~ 374 (595)
T TIGR02350 356 VNPDEVVAIGAAIQGGVLK 374 (595)
T ss_pred cCcHHHHHHHHHHHHHHhc
Confidence 1245677889999998754
No 60
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=92.26 E-value=5.2 Score=44.70 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|...++--.| +..+... ..-..++-++||. .-|..++.+++.+. ... ...
T Consensus 281 r~efe~l~~~ll~~i~~~i~~~L----~~a~~~~----~~id~ViLvGGss--riP~V~~~l~~~f~----~~~--~~~- 343 (599)
T TIGR01991 281 RDEFEALIQPLVQKTLSICRRAL----RDAGLSV----EEIKGVVLVGGST--RMPLVRRAVAELFG----QEP--LTD- 343 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh----hhCCEEEEECCcC--CChHHHHHHHHHhC----CCC--CCC-
Confidence 56667888888888776665443 3222210 0112456666665 67888887777653 211 111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
...+.+-..|||+.|+..+
T Consensus 344 ~npdeaVA~GAai~a~~l~ 362 (599)
T TIGR01991 344 IDPDQVVALGAAIQADLLA 362 (599)
T ss_pred CCCcHHHHHHHHHHHHHhc
Confidence 2346778899999998755
No 61
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=91.70 E-value=1.3 Score=41.39 Aligned_cols=76 Identities=24% Similarity=0.214 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
+++++|++=-|.-....+-.+-+..+. +...|.+.||.. +.|.+.+.+-..+. ..|.+...++
T Consensus 122 ~~~rAv~Egia~~~~~~~~~l~~~~~~--------~~~~i~~~GG~~-~n~~~~q~~Advl~--------~~V~~~~~~e 184 (198)
T PF02782_consen 122 DLARAVLEGIAFSLRQILEELEELTGI--------PIRRIRVSGGGA-KNPLWMQILADVLG--------RPVVRPEVEE 184 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS--------CESEEEEESGGG-GSHHHHHHHHHHHT--------SEEEEESSST
T ss_pred HHHHHHHHhHHHHHHHhhhhccccccc--------cceeeEeccccc-cChHHHHHHHHHhC--------CceEeCCCCc
Confidence 455566664454554444444443344 225677777777 88988888776553 3566666789
Q ss_pred hhHHHHHHHHHHh
Q 011505 465 GSGIGAALLAASH 477 (484)
Q Consensus 465 gs~iGAAl~Aa~~ 477 (484)
++.+|||++|+++
T Consensus 185 ~~a~GaA~~A~~a 197 (198)
T PF02782_consen 185 ASALGAALLAAVA 197 (198)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhh
Confidence 9999999999875
No 62
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=90.76 E-value=21 Score=37.05 Aligned_cols=49 Identities=27% Similarity=0.430 Sum_probs=34.1
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEE----EcCChhHHHHHHHHH
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIE----HSNDGSGIGAALLAA 475 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~----~~~Dgs~iGAAl~Aa 475 (484)
..|.+.|.+. ..|.|.+.+++.+.++.+-. ...+. .+++ +..|||++|-
T Consensus 262 ~~IilSGr~~-~~~~~~~~l~~~l~~~~~~~---v~~l~~~~~~aKe-aA~GaAiIA~ 314 (343)
T PF07318_consen 262 DEIILSGRFS-RIPEFRKKLEDRLEDYFPVK---VRKLEGLARKAKE-AAQGAAIIAN 314 (343)
T ss_pred CEEEEecccc-ccHHHHHHHHHHHHhhcccc---eeecccccccchh-hhhhHHHHhh
Confidence 4588999986 78889999999998876521 11111 1354 6779999984
No 63
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=90.43 E-value=7.7 Score=39.76 Aligned_cols=62 Identities=19% Similarity=0.342 Sum_probs=40.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
.++|||+|.+++|+..++..++..++.. ....+.|.+......-.=.+-+++.|.+.+++.+
T Consensus 4 ~~vgiDIg~~~Ik~v~~~~~~~~~~v~~--~~~~~~p~~~i~~g~i~d~~~~~~~l~~~~~~~~ 65 (348)
T TIGR01175 4 LLVGIDIGSTSVKVAQLKRSGDRYKLEH--YAVEPLPAGIFTEGHIVEYQAVAEALKELLSELG 65 (348)
T ss_pred cEEEEEeccCeEEEEEEEecCCceEEEE--EEEEECCCCcccCCCccCHHHHHHHHHHHHHHcC
Confidence 6899999999999998886555444553 3346777665432211123556777777776654
No 64
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=89.78 E-value=14 Score=38.50 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=37.9
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc--CCCcEEEEEEccCc-ceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT--NKDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~--~~~~~iglIlGTG~-Na~yie 249 (484)
.-++..+.+.++++..|+++ ..++++..|+..+.... .+...+-+=+|.|+ +.+.+.
T Consensus 155 ~~~~~v~~~~~~~~~aGl~~--~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~ 214 (371)
T TIGR01174 155 GSSTILRNLVKCVERCGLEV--DNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYT 214 (371)
T ss_pred EEHHHHHHHHHHHHHcCCCe--eeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEE
Confidence 45567777888888777765 57889998888764322 23345556677777 555554
No 65
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=8.6 Score=42.84 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.+++...+.|....+-.++ +..+-. ...-..++-++|+. ..|...+.+.+.+. ++. .+-
T Consensus 278 R~~~E~l~~dll~r~~~~~~~al----~~a~l~----~~~I~~VilvGGst--riP~V~~~v~~~f~----~~~---~~~ 340 (579)
T COG0443 278 RAKFEELILDLLERTIEPVEQAL----KDAGLE----KSDIDLVILVGGST--RIPAVQELVKEFFG----KEP---EKS 340 (579)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCC----hhhCceEEEcccee--ccHHHHHHHHHHhC----ccc---ccc
Confidence 55666777777777766665333 222211 01122566666665 67776666665543 211 111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 011505 460 EHSNDGSGIGAALLAASHSK 479 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~~ 479 (484)
.--+.+-.+|||+.|+..+.
T Consensus 341 inpdeava~GAa~qa~~l~~ 360 (579)
T COG0443 341 INPDEAVALGAAIQAAVLSG 360 (579)
T ss_pred CCccHHHHHHHHHHHHhhcC
Confidence 12356778999999987553
No 66
>PLN02669 xylulokinase
Probab=89.58 E-value=1.2 Score=49.31 Aligned_cols=63 Identities=11% Similarity=0.205 Sum_probs=40.7
Q ss_pred cCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CCCc----cccCcc----------hhHHHHHHH
Q 011505 87 NLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PPHL----MTGTSD----------ALFDYIAAE 150 (484)
Q Consensus 87 ~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~~~----~~~~~~----------~lfd~Ia~~ 150 (484)
+||.+. +||+||+|.|++|+.+++.+|+ ++...+..+.. |..- ...+.+ .+++-+...
T Consensus 3 ~~~~~~---~~LGiD~GT~s~Ka~l~d~~g~---vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~ 76 (556)
T PLN02669 3 SLPEDS---LFLGFDSSTQSLKATVLDSNLR---IVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLL 76 (556)
T ss_pred CCCCCC---eEEEEecccCCeEEEEEcCCCC---EEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHH
Confidence 456644 7999999999999999998775 55444433331 1111 011233 455888888
Q ss_pred HHHHH
Q 011505 151 LAKFV 155 (484)
Q Consensus 151 i~~fl 155 (484)
+++.+
T Consensus 77 l~~l~ 81 (556)
T PLN02669 77 LQKLA 81 (556)
T ss_pred HHHHH
Confidence 88876
No 67
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=88.00 E-value=0.99 Score=48.30 Aligned_cols=77 Identities=19% Similarity=0.302 Sum_probs=56.4
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeee-eeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEF-AEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~-~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
..++++||-|-|+.|..+++-+|+--.+.+..+ +.|+-|.-+ ..++.+++.-...++.+.+.+.+.. +.++..|
T Consensus 4 ~~yIlAiDqGTTssRaivfd~~g~iva~~q~e~~Q~yP~~GWV-EhDp~eIw~~~~~~l~~a~~~~~i~----~~~iaaI 78 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDEDGNIVAIAQREFTQIYPQPGWV-EHDPLEIWASVRSVLKEALAKAGIK----PGEIAAI 78 (499)
T ss_pred ccEEEEEecCCcceeEEEECCCCCchhhhhhhhhhhCCCCCcc-ccCHHHHHHHHHHHHHHHHHHcCCC----ccceEEE
Confidence 468999999999999999988876322222222 225655544 5689999999999999999887654 3557778
Q ss_pred eee
Q 011505 173 GFT 175 (484)
Q Consensus 173 Gft 175 (484)
|+|
T Consensus 79 GIT 81 (499)
T COG0554 79 GIT 81 (499)
T ss_pred Eee
Confidence 887
No 68
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=87.31 E-value=8.9 Score=38.19 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=72.8
Q ss_pred CCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCC-ccccCcchhHHHHHHHHHHHHhhcccccccCCC
Q 011505 89 PTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPH-LMTGTSDALFDYIAAELAKFVSQESEEFKLSPG 167 (484)
Q Consensus 89 P~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~ 167 (484)
|.-+..+.+++||+|-|++|+...+..++ ++.. -..|.+ +..|.-.+ ++-....|..+++....... .
T Consensus 18 ~~~~~~~~~~~iDiGSssi~~vv~~~~~~---~~~~----~~~~~~~vr~G~i~d-i~~a~~~i~~~~~~ae~~~g---~ 86 (267)
T PRK15080 18 PVATESPLKVGVDLGTANIVLAVLDEDGQ---PVAG----ALEWADVVRDGIVVD-FIGAVTIVRRLKATLEEKLG---R 86 (267)
T ss_pred CCCCCCCEEEEEEccCceEEEEEEcCCCC---EEEE----EeccccccCCCEEee-HHHHHHHHHHHHHHHHHHhC---C
Confidence 33446779999999999999888765443 3321 122332 33332212 66667777777763211100 0
Q ss_pred CceeeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCc-ceE
Q 011505 168 RQRELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGS-NAA 246 (484)
Q Consensus 168 ~~~~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~-Na~ 246 (484)
+...+ ..+.|..++..+ ...+.+++++.|+++ ..++++..|+..+-.+ .+ .+=+=+|-|+ +.+
T Consensus 87 ~i~~v--~~~vp~~~~~~~---------~~~~~~~~~~aGl~~--~~ii~e~~A~a~~~~~--~~-~~vvDIGggtt~i~ 150 (267)
T PRK15080 87 ELTHA--ATAIPPGTSEGD---------PRAIINVVESAGLEV--THVLDEPTAAAAVLGI--DN-GAVVDIGGGTTGIS 150 (267)
T ss_pred CcCeE--EEEeCCCCCchh---------HHHHHHHHHHcCCce--EEEechHHHHHHHhCC--CC-cEEEEeCCCcEEEE
Confidence 11222 236676643211 233557887778875 4789999887765322 22 2334455555 444
Q ss_pred EEc
Q 011505 247 YVE 249 (484)
Q Consensus 247 yie 249 (484)
++.
T Consensus 151 v~~ 153 (267)
T PRK15080 151 ILK 153 (267)
T ss_pred EEE
Confidence 543
No 69
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=86.20 E-value=1.3 Score=47.59 Aligned_cols=59 Identities=22% Similarity=0.071 Sum_probs=36.5
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeE-EeeeeeeecCCCc---cccCcchhHHHHHHHHHHHHh
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLI-NQEFAEVSIPPHL---MTGTSDALFDYIAAELAKFVS 156 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~-~~~~~~~~ip~~~---~~~~~~~lfd~Ia~~i~~fl~ 156 (484)
+|||+|.|+.|+.+++.++.+.++. ...+...+...+. ..-+.+++++.+.+++++...
T Consensus 1 ~aiD~Gtt~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~ 63 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDA 63 (454)
T ss_pred CcEeccCCchheEEEEEcCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhc
Confidence 5899999999999999985423343 2221111111111 112355788888888888765
No 70
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=84.51 E-value=4.8 Score=43.84 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=53.7
Q ss_pred eeeEEEEEeCCceEEEEEEEe-CCCcceeEEeeeeeee--cC-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 94 KGTYYALDLGGTNFRVLRVHL-GGKGVGLINQEFAEVS--IP-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l-~g~~~~i~~~~~~~~~--ip-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
...+++||+|-|..|+++.+- +++ .......+.+ -| ...+.-++++++.-+.+||+...++-... ..
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~~~~~e---~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~------~~ 75 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFNAKNGE---LLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVL------NI 75 (516)
T ss_pred cceEEEEEcCCCceEEEEEecCCCc---cceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccc------cc
Confidence 567999999999999999983 343 2221111111 11 22335578999999999999988765432 23
Q ss_pred eeeeeeeeeeeeee
Q 011505 170 RELGFTFSFPVMQT 183 (484)
Q Consensus 170 ~~lGftFSfPv~q~ 183 (484)
...|.|.+.-+.|.
T Consensus 76 ~~~~~~~igv~~qr 89 (516)
T KOG2517|consen 76 KVVGATCIGVVNQR 89 (516)
T ss_pred cccccEEEEEEecC
Confidence 45667888877765
No 71
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=84.32 E-value=5 Score=41.19 Aligned_cols=115 Identities=18% Similarity=0.319 Sum_probs=80.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhccccccc-----CC----
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKL-----SP---- 166 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~-----~~---- 166 (484)
..+|||+|-+.+++.-++-.|+..++. ++...++|.+.+..+.-.=.+-+++.|++.+.+++..... +.
T Consensus 11 ~~vGIdI~~~sVKvvqLs~~g~~~kLe--~y~~~~lp~~iv~dg~ivd~~av~~~Lk~ala~~gi~~k~aa~AVP~s~ai 88 (354)
T COG4972 11 AAVGIDIGSHSVKVVQLSRSGNRYKLE--KYASEPLPENIVADGKIVDYDAVASALKRALAKLGIKSKNAATAVPGSAAI 88 (354)
T ss_pred ceeeEeeccceEEEEEEcccCCceeee--eeeecccCccccccCCcccHHHHHHHHHHHHHhcCcchhhhhhhcCcccee
Confidence 579999999999987776556555544 4455789999886554445788999999998887654310 00
Q ss_pred ----------CC-------ceeeeeeeeeeeeeeecCceEE----------------ECccHHHHHHHHHHhcCCCceE
Q 011505 167 ----------GR-------QRELGFTFSFPVMQTSINTGTL----------------VGRDVVEELSRAMAKQGLDMSV 212 (484)
Q Consensus 167 ----------~~-------~~~lGftFSfPv~q~~~~~G~l----------------~G~dv~~~L~~al~r~gl~v~v 212 (484)
++ ....+--+|||++..+++=-.| .-+++++...++|+..|+...|
T Consensus 89 tk~i~vp~~lde~eL~~~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~v 167 (354)
T COG4972 89 TKTIPVPDELDEKELEDQVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKV 167 (354)
T ss_pred eEEeccCCcccHHHHHHHHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceE
Confidence 00 1245667899988776544444 5568999999999999987543
No 72
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=83.90 E-value=6 Score=44.77 Aligned_cols=82 Identities=18% Similarity=0.206 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-++.|...++-..|. ..+-. ...-..++-++||. .-|..++.+++.+. .... ..
T Consensus 336 R~efe~l~~~l~~~~~~~i~~~L~----~a~~~----~~~i~~ViLvGGss--riP~v~~~l~~~f~----~~~~--~~- 398 (663)
T PTZ00400 336 RAKLEELTHDLLKKTIEPCEKCIK----DAGVK----KDELNDVILVGGMT--RMPKVSETVKKIFG----KEPS--KG- 398 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCC----HHHCcEEEEECCcc--CChHHHHHHHHHhC----CCcc--cC-
Confidence 566677888888887666655442 22210 00012566677765 57888877777653 2111 11
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.-.+..-..|||+.|++.+
T Consensus 399 ~npdeaVA~GAAi~aa~l~ 417 (663)
T PTZ00400 399 VNPDEAVAMGAAIQAGVLK 417 (663)
T ss_pred CCCccceeeccHHHHHhhc
Confidence 1235566789999998754
No 73
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=83.17 E-value=5.3 Score=44.76 Aligned_cols=83 Identities=16% Similarity=0.175 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|...++-..| ...+-. ...-..++-++||. .-|..++.+++.+. ... ...
T Consensus 297 r~efe~l~~~l~~~~~~~i~~~L----~~a~~~----~~~i~~ViLvGGss--riP~v~~~l~~~fg----~~~--~~~- 359 (616)
T PRK05183 297 REQFNALIAPLVKRTLLACRRAL----RDAGVE----ADEVKEVVMVGGST--RVPLVREAVGEFFG----RTP--LTS- 359 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCC----cccCCEEEEECCcc--cChHHHHHHHHHhc----cCc--CcC-
Confidence 66677888888888776654433 322211 00112456666665 67887777776653 211 111
Q ss_pred EEcCChhHHHHHHHHHHhcc
Q 011505 460 EHSNDGSGIGAALLAASHSK 479 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~~ 479 (484)
.-.+.+-..|||+.|+..+.
T Consensus 360 ~npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 360 IDPDKVVAIGAAIQADILAG 379 (616)
T ss_pred CCchHHHHHHHHHHHHHhcc
Confidence 12466778899999987553
No 74
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=78.71 E-value=8.2 Score=43.32 Aligned_cols=82 Identities=20% Similarity=0.254 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|....+--.| ...+... ..-..++-++||. ..|..++.+++.+ +... ...
T Consensus 295 R~~fe~l~~~l~~~~~~~i~~~l----~~a~~~~----~~id~ViLvGGss--riP~v~~~l~~~f----g~~~--~~~- 357 (627)
T PRK00290 295 RAKFEELTEDLVERTIEPCKQAL----KDAGLSV----SDIDEVILVGGST--RMPAVQELVKEFF----GKEP--NKG- 357 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHcCCCh----hhCcEEEEECCcC--CChHHHHHHHHHh----CCCC--CcC-
Confidence 56666778888877666554433 2222210 0112456666665 5888888887765 3211 111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.-.+.+-..|||+.|++.+
T Consensus 358 ~npdeava~GAa~~aa~l~ 376 (627)
T PRK00290 358 VNPDEVVAIGAAIQGGVLA 376 (627)
T ss_pred cCChHHHHHhHHHHHHHhc
Confidence 1245677889999998755
No 75
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=78.50 E-value=31 Score=36.20 Aligned_cols=257 Identities=17% Similarity=0.243 Sum_probs=111.4
Q ss_pred EEEEEEEeCCCcceeEEeeeeeeecCCCccc-------cC----------cchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 107 FRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-------GT----------SDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 107 lRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-------~~----------~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
+=+++|++.+...+++. +..++.|++++. .. ..+|=++.|+.+..|+++++... ++.
T Consensus 15 iD~alv~~~~~~~~~l~--~~~~pyp~~lr~~l~~~~~~~~~~~~~~~~l~~~lg~~~a~av~~~l~~~~i~~----~~I 88 (364)
T PF03702_consen 15 IDAALVEFDGWRIELLA--FHSFPYPSELRERLLALSRPAASSLDELCELDRELGELFADAVNQFLKKNGISP----SDI 88 (364)
T ss_dssp EEEEEEEESSSSEEEEE--EEEEE--HHHHHHHHHCCSTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHCT--G----GGE
T ss_pred hhheeEEEECCceEEee--eEeecCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----ccc
Confidence 34677887765444443 344677776541 11 23466788999999999876532 223
Q ss_pred eeeeeeeeeeeeeeecC---ceEE-ECccHHHHHHHHHHhcCCCceEEEEEechHHH-Hhcc--------c-----ccC-
Q 011505 170 RELGFTFSFPVMQTSIN---TGTL-VGRDVVEELSRAMAKQGLDMSVSALVNDTVGT-LAGG--------R-----YTN- 230 (484)
Q Consensus 170 ~~lGftFSfPv~q~~~~---~G~l-~G~dv~~~L~~al~r~gl~v~v~alvNDtvat-lla~--------~-----y~~- 230 (484)
.-+| +-...-.+... ..++ .|. ...|-+.. |++ +|.|=-.. +..+ . |.+
T Consensus 89 ~~Ig--sHGQTv~H~P~~~~~~TlQiG~--~~~iA~~t---gi~-----vV~DFR~~Dia~GGqGAPLvP~~~~~lf~~~ 156 (364)
T PF03702_consen 89 DLIG--SHGQTVFHRPEGQHPFTLQIGD--PAVIAERT---GIT-----VVSDFRSADIAAGGQGAPLVPFFHQLLFRHP 156 (364)
T ss_dssp EEEE--E--EEEEEECCCTTTEEEEES---HHHHHHHH---SS------EEE--CHHHHHTTS-S---CHHHHHHHH--T
T ss_pred cEEE--eCCcceecCcCCCCCceEecCC--HHHHHHHH---CcC-----EEeechHHHHhccCCCCCcccHHHHHHhCCC
Confidence 3333 33332223222 2344 444 34444444 665 22331110 0000 0 112
Q ss_pred CCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCC-CCCCCCCCCchhhhhhh-ccCCCCCcceeeecccc
Q 011505 231 KDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWG-DFRSSHLSLSEYDNALD-AESLNPGEQIFEKMISG 308 (484)
Q Consensus 231 ~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG-~f~~~~lp~T~~D~~lD-~~s~npg~q~fEkm~SG 308 (484)
....+-+=+|==.|.+|+.+...+-.++- ..|+|+|| .|= .+. --+||+.-. +.++++....+|++.+-
T Consensus 157 ~~~~~~lNIGGIaNiT~l~~~~~~~~fDt---GPGN~liD-~~~~~~~-----~~~yD~~G~~A~~G~v~~~ll~~ll~~ 227 (364)
T PF03702_consen 157 KKPRAVLNIGGIANITFLPPGGDVIGFDT---GPGNMLID-AWIQRHT-----GLPYDKDGEWAASGKVNEELLDRLLSH 227 (364)
T ss_dssp TS-EEEEEESSEEEEEEE-TTS--EEEEE---EESSHHHH-HHHHHHC-----S-SS-GGGHHHHCS---HHHHHHHHTS
T ss_pred CCCEEEEecCCceEEEEecCCCCceeecc---CcHHHHHH-HHHHHHh-----CCCcCcCcHhhCcCCCCHHHHHHHhcC
Confidence 24567788887779999976544444432 22456666 221 110 134565422 23444443444444443
Q ss_pred ccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011505 309 MYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCN 388 (484)
Q Consensus 309 ~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~ 388 (484)
.|+ ....|+.+ .+.-|....+..+ +.. +. .+.+|
T Consensus 228 pyf------------------~~~pPKSt-GrE~F~~~~l~~~--------------l~~-~~---~~~~D--------- 261 (364)
T PF03702_consen 228 PYF------------------KRPPPKST-GREDFGLEWLQQI--------------LDK-FS---LSPED--------- 261 (364)
T ss_dssp HHH------------------HS-SS-----TTTSSHHHHHHH--------------CTT-ST---T-HHH---------
T ss_pred ccc------------------cCCCCCcC-CccccCHHHHHHH--------------HHh-cC---CChHH---------
Confidence 333 22233332 2223333333222 111 11 11222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 389 IVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 389 ~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
++.--.++.|..|+--+++..+. ...++..+||. ++|.+.+++++.+.
T Consensus 262 -~~aTlt~~TA~sI~~~i~~~~~~-------~~~v~v~GGGa--~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 262 -ILATLTEFTAQSIADAIRRFPPQ-------PDEVYVCGGGA--RNPFLMERLQERLP 309 (364)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH-TT--------EEEEEESGGG--G-HHHHHHHHHH-T
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCC-------CceEEEECCCc--CCHHHHHHHHhhCC
Confidence 22233445666777666666552 23677888887 57888888887653
No 76
>PRK13324 pantothenate kinase; Reviewed
Probab=77.79 E-value=14 Score=36.82 Aligned_cols=46 Identities=15% Similarity=0.383 Sum_probs=30.5
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCC-CccccCcchhHHHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPP-HLMTGTSDALFDYIAAEL 151 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i 151 (484)
+|+||+|-||++.++.+ ++ ++.. .+.+++ +. ..+.++++-++...+
T Consensus 2 iL~iDiGNT~ik~gl~~-~~---~~~~----~~r~~t~~~-~~t~de~~~~l~~~~ 48 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFD-GD---RIVS----QIRYATSSV-DSTSDQMGVFLRQAL 48 (258)
T ss_pred EEEEEeCCCceEEEEEE-CC---EEEE----EEEEecCcc-ccchHHHHHHHHHHH
Confidence 68999999999999997 22 2442 366776 44 345666665555443
No 77
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=76.87 E-value=39 Score=33.22 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=31.4
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHH
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAEL 151 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i 151 (484)
|+||+|-||+++++.+ ++ ++.. .|.+|++.. .+.+++..++...+
T Consensus 2 L~iDiGNT~i~~g~~~-~~---~~~~----~~r~~t~~~-~t~de~~~~l~~~~ 46 (243)
T TIGR00671 2 LLIDVGNTRIVFALNS-GN---KVYQ----FWRLATNLM-KTYDEHSEFLKELF 46 (243)
T ss_pred EEEEECCCcEEEEEEE-CC---EEEE----EEEecCCCc-cChHHHHHHHHHHH
Confidence 7899999999999987 22 2442 377887775 46677766654443
No 78
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=76.71 E-value=95 Score=33.01 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=35.4
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc-ceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 249 (484)
..++..+-+.+++++.|+++ ..++++..|+..+..+.+ ....+-+=+|-|| +.+++.
T Consensus 163 ~~~~~~~~~~~a~~~aGl~v--~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~ 222 (420)
T PRK09472 163 CHNDMAKNIVKAVERCGLKV--DQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYT 222 (420)
T ss_pred EchHHHHHHHHHHHHcCCeE--eeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEE
Confidence 33455666677777777765 477888888777654433 2334555677777 455554
No 79
>CHL00094 dnaK heat shock protein 70
Probab=76.29 E-value=15 Score=41.26 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|.-++.|....+-..|... .+.+. .-..++.++||. .-|..++.+++.+. ... ...+
T Consensus 297 R~~fe~l~~~l~~~~~~~i~~~L~~a--~~~~~------~i~~ViLvGGss--riP~v~~~l~~~fg----~~~--~~~~ 360 (621)
T CHL00094 297 RAKFEELCSDLINRCRIPVENALKDA--KLDKS------DIDEVVLVGGST--RIPAIQELVKKLLG----KKP--NQSV 360 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc--CCChh------hCcEEEEECCcc--CChHHHHHHHHHhC----CCc--CcCC
Confidence 55666777777777665554444221 11110 012566777764 68888888887653 211 1111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..+.+-..|||+.|++.+
T Consensus 361 -~pdeava~GAA~~aa~ls 378 (621)
T CHL00094 361 -NPDEVVAIGAAVQAGVLA 378 (621)
T ss_pred -CchhHHHhhhHHHHHHhc
Confidence 235577899999998765
No 80
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=74.22 E-value=27 Score=32.53 Aligned_cols=57 Identities=16% Similarity=0.315 Sum_probs=35.6
Q ss_pred EEEEEeCCceEEEEEEEeCCC-cceeEEeeeeeeecCCC-ccccCcchhHHHHHHHHHHHHhhc
Q 011505 97 YYALDLGGTNFRVLRVHLGGK-GVGLINQEFAEVSIPPH-LMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~-~~~i~~~~~~~~~ip~~-~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
|.+||+|-|++++...+..++ ..++... -..|.+ +.+|.-.+ .+-.++.|++.+++.
T Consensus 1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~----~~~~s~gi~~G~I~d-~~~~~~~I~~ai~~a 59 (187)
T smart00842 1 IVGLDIGTSKIKALVAEVDEDGEINVIGV----GEVPSRGIRKGVIVD-IEAAARAIREAVEEA 59 (187)
T ss_pred CEEEEeccceEEEEEEEEcCCCCEEEEEE----EEecCCCccCcEEEC-HHHHHHHHHHHHHHH
Confidence 579999999999999988643 2345432 223544 33333222 455677777776654
No 81
>COG5146 PanK Pantothenate kinase, acetyl-CoA regulated [Coenzyme metabolism]
Probab=74.17 E-value=9.4 Score=37.54 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=45.9
Q ss_pred EEEEechHHHHhc----ccccCCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhh
Q 011505 213 SALVNDTVGTLAG----GRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDN 288 (484)
Q Consensus 213 ~alvNDtvatlla----~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~ 288 (484)
+.+.||..+-.+. +.+.+-...+-+-+|||+..-|+-..+......+..-..| |=||... ---+.|.||.
T Consensus 122 vFv~~d~~~e~~~~~~~~~~h~lypyilvNiGsGvSilkvtgpsqf~RvGGsslGGG-----tlwGLls-Llt~a~~ydq 195 (342)
T COG5146 122 VFVEFDAASEGLGILLKEQGHDLYPYILVNIGSGVSILKVTGPSQFERVGGSSLGGG-----TLWGLLS-LLTQATDYDQ 195 (342)
T ss_pred HeeeeccccchhhhhhhhccccccceeeEeccCCeEEEEecCcchhccccccccCcc-----hHHHHHH-HHcccccHHH
Confidence 6688998765543 3344446778889999999888876655544433211111 2355331 1137899999
Q ss_pred hhhc
Q 011505 289 ALDA 292 (484)
Q Consensus 289 ~lD~ 292 (484)
.+|.
T Consensus 196 mld~ 199 (342)
T COG5146 196 MLDM 199 (342)
T ss_pred HHHH
Confidence 9985
No 82
>PRK13411 molecular chaperone DnaK; Provisional
Probab=67.66 E-value=22 Score=40.20 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|.-+++|...++--+|. ..+-.. ..-..++-++||. .-|..++.+++.+.. ... ...+
T Consensus 296 R~~fe~l~~~l~~~~~~~i~~~L~----~a~~~~----~~id~ViLvGGss--riP~v~~~l~~~f~~---~~~--~~~~ 360 (653)
T PRK13411 296 RAKFEELTKDLVEATIEPMQQALK----DAGLKP----EDIDRVILVGGST--RIPAVQEAIQKFFGG---KQP--DRSV 360 (653)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCH----HHCcEEEEECCCC--CcchHHHHHHHHcCC---cCc--CCCC
Confidence 566778888888887776654442 222100 0012456666665 678888777766521 110 1111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
-.+.+-..|||+.|++.+
T Consensus 361 -npdeaVA~GAAi~aa~l~ 378 (653)
T PRK13411 361 -NPDEAVALGAAIQAGVLG 378 (653)
T ss_pred -CchHHHHHHHHHHHHhhc
Confidence 235677889999998765
No 83
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=66.26 E-value=24 Score=36.27 Aligned_cols=111 Identities=16% Similarity=0.329 Sum_probs=57.4
Q ss_pred EEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhccccc-----ccCCC----Cc
Q 011505 99 ALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEF-----KLSPG----RQ 169 (484)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~-----~~~~~----~~ 169 (484)
|||+|-.++|+..++-.+++..+.. +-..++|........-.=.+.+++.|++.+++++... .++.. +.
T Consensus 1 GiDiG~~siK~v~l~~~~~~~~l~~--~~~~~~p~~~i~~g~i~d~~~l~~~L~~~~~~~~~~~k~v~~aip~~~vi~r~ 78 (340)
T PF11104_consen 1 GIDIGSSSIKAVELSKKGNRFQLEA--FASIPLPPGAISDGEIVDPEALAEALKELLKENKIKGKKVVLAIPGSSVIIRN 78 (340)
T ss_dssp EEEE-SSEEEEEEEETTTT--EEEE--EEEEE--TTSEETTEES-HHHHHHHHHHHHHHHT----EEEEEE-GGG-EEEE
T ss_pred CeecCCCeEEEEEEEEcCCccEEEE--EEEEECCCCCccCCCcCCHHHHHHHHHHHHHHcCCCCCeEEEEeCCCcEEEEE
Confidence 7999999999998888665544443 3457888877533322335677888888877665321 01100 11
Q ss_pred eeeeee-----------------eeeeeeeeecCceE----------E------ECccHHHHHHHHHHhcCCCce
Q 011505 170 RELGFT-----------------FSFPVMQTSINTGT----------L------VGRDVVEELSRAMAKQGLDMS 211 (484)
Q Consensus 170 ~~lGft-----------------FSfPv~q~~~~~G~----------l------~G~dv~~~L~~al~r~gl~v~ 211 (484)
+.+-.. +|||+++...+--+ + .=+++++.+-+.+++.|++..
T Consensus 79 i~lP~~m~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~ 153 (340)
T PF11104_consen 79 IRLPAVMPEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPV 153 (340)
T ss_dssp EEEE----HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEE
T ss_pred EecCCCCCHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceE
Confidence 222222 66666655332221 1 556788888888888888754
No 84
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=65.77 E-value=81 Score=30.77 Aligned_cols=125 Identities=13% Similarity=0.146 Sum_probs=61.2
Q ss_pred EEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeee
Q 011505 99 ALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSF 178 (484)
Q Consensus 99 aiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSf 178 (484)
+||+|-|++|+...+-.++ .+- ..+.|.+-+....-.=|+-....+..+++...... . ...--...+-
T Consensus 1 g~dig~~~ik~v~~~~~~~--~~~-----~~~~~~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~----g-~~~~~vvisV 68 (239)
T TIGR02529 1 GVDLGTANIVIVVLDEDGQ--PVA-----GVMQFADVVRDGIVVDFLGAVEIVRRLKDTLEQKL----G-IELTHAATAI 68 (239)
T ss_pred CCCcccceEEEEEEecCCC--EEE-----EEecccccccCCeEEEhHHHHHHHHHHHHHHHHHh----C-CCcCcEEEEE
Confidence 5899999999777665543 111 23456554432211113333333443332211000 0 0001222334
Q ss_pred eeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCc-ceEEEc
Q 011505 179 PVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 179 Pv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~-Na~yie 249 (484)
|...+.. =.+.+.++++..|+++ +.++|+..|+.++... .. .+=+=+|-|+ +.+.+.
T Consensus 69 P~~~~~~---------~r~a~~~a~~~aGl~~--~~li~ep~Aaa~~~~~--~~-~~vvDiGggtt~i~i~~ 126 (239)
T TIGR02529 69 PPGTIEG---------DPKVIVNVIESAGIEV--LHVLDEPTAAAAVLQI--KN-GAVVDVGGGTTGISILK 126 (239)
T ss_pred CCCCCcc---------cHHHHHHHHHHcCCce--EEEeehHHHHHHHhcC--CC-cEEEEeCCCcEEEEEEE
Confidence 4432221 1245667777778765 6899999998875322 22 2444456555 444443
No 85
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=64.33 E-value=32 Score=37.59 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|......+-.+-+..+.. ...|.+.||. .+.+.+.+.+-..+. ..|......+
T Consensus 382 ~~~RAvlEgia~~~~~~l~~l~~~~g~~--------~~~i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~~~~e 444 (520)
T PRK10939 382 TLFRALEENAAIVSACNLQQIAAFSGVF--------PSSLVFAGGG-SKGKLWSQILADVTG--------LPVKVPVVKE 444 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CcEEEEeCCc-ccCHHHHHHHHHhcC--------CeeEEecccC
Confidence 4666777755555554444443322321 1345555663 577877776665442 3565556788
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|++..
T Consensus 445 ~~alGaA~lA~~~~ 458 (520)
T PRK10939 445 ATALGCAIAAGVGA 458 (520)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998764
No 86
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=64.24 E-value=43 Score=37.50 Aligned_cols=80 Identities=18% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++|+-+++|.-.++--.+ +..++. .-..+|-++||. ..|..++.+++.+ +.. ...-
T Consensus 279 r~efe~l~~~l~~~~~~~i~~~L----~~a~~~------~Id~ViLvGGss--riP~v~~~l~~~f----~~~---~~~~ 339 (595)
T PRK01433 279 KQTLEQLILPLVERTINIAQECL----EQAGNP------NIDGVILVGGAT--RIPLIKDELYKAF----KVD---ILSD 339 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhcCcc------cCcEEEEECCcc--cChhHHHHHHHHh----CCC---ceec
Confidence 55566777777777665544333 222211 012466666665 5777777777654 321 1111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.-.+.+-..|||+.|+.-+
T Consensus 340 ~npdeaVA~GAAi~a~~l~ 358 (595)
T PRK01433 340 IDPDKAVVWGAALQAENLI 358 (595)
T ss_pred CCchHHHHHHHHHHHHHhh
Confidence 1245677899999998743
No 87
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=62.56 E-value=35 Score=37.14 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|.-+...+-.+-+..+.. ...|.+.||.. +++.+.+.+...+. ..|.+...++
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~--------~~~i~~~GG~a-~s~~w~Qi~Adv~g--------~pV~~~~~~e 441 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIE--------LNSLRVDGGLT-KNKLLMQFQADILG--------KDIVVPEMAE 441 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC--------cceEEEecccc-cCHHHHHHHHHHhC--------CceEecCccc
Confidence 3555666655544444443333222321 13455566655 67777766665442 2455555678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 442 ~~alGaAl~aa~a~ 455 (504)
T PTZ00294 442 TTALGAALLAGLAV 455 (504)
T ss_pred chHHHHHHHHHhhc
Confidence 89999999998765
No 88
>PRK10854 exopolyphosphatase; Provisional
Probab=60.42 E-value=54 Score=35.92 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=44.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccC--cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGT--SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~--~~~lfd~Ia~~i~~fl~~ 157 (484)
.|-+||+|-.++|..+++..++..+++....+...+...+.... .++-.+...+++..|.+.
T Consensus 12 ~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g~Ls~e~~~r~~~~L~~F~~~ 75 (513)
T PRK10854 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDNMLSEEAMERGLNCLSLFAER 75 (513)
T ss_pred EEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999986554455544444455655553211 357888999999999764
No 89
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=60.09 E-value=1.6e+02 Score=30.21 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc-ceEEE
Q 011505 197 EELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS-NAAYV 248 (484)
Q Consensus 197 ~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yi 248 (484)
+.+.++++..|+++ +.++|+.++++++..... +...+=+=+|-|+ +.+.+
T Consensus 115 ~~l~~a~~~ag~~~--~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi 167 (335)
T PRK13929 115 RAISDAVKNCGAKN--VHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAII 167 (335)
T ss_pred HHHHHHHHHcCCCe--eEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEE
Confidence 44566777666654 689999999999854432 2233333455555 34443
No 90
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=59.72 E-value=89 Score=31.91 Aligned_cols=53 Identities=15% Similarity=0.207 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc-ceEEEc
Q 011505 195 VVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 195 v~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie 249 (484)
-.+.+++++++.|+++ +.++|+.+|++++..... +...+=+=+|-|| +.+.+.
T Consensus 110 ~r~~~~~a~~~ag~~~--~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~ 165 (336)
T PRK13928 110 EKRAVREAAEQAGAKK--VYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLS 165 (336)
T ss_pred HHHHHHHHHHHcCCCc--eEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEE
Confidence 4467788888777764 689999999999865532 2222223356666 455554
No 91
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=58.66 E-value=20 Score=36.19 Aligned_cols=47 Identities=23% Similarity=0.243 Sum_probs=31.2
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHH
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAAL 472 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl 472 (484)
..|.+.||....+|..++.+.++++-+- .+-+.+++..--+.+|||+
T Consensus 232 ~~IvF~Gg~L~~~~~l~~~~~~~~~~~~----~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 232 DRIVFIGSFLRNNQLLMKVLSYATNFWS----KKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CeEEEECCcccCCHHHHHHHHHHHhhcC----ceEEEECCcchHHHhhhcc
Confidence 4699999999999999999999886321 1123333444445555553
No 92
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=58.35 E-value=2e+02 Score=29.31 Aligned_cols=46 Identities=13% Similarity=0.189 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc
Q 011505 196 VEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS 243 (484)
Q Consensus 196 ~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~ 243 (484)
.+.+++++...|++ ++.++|+.++++++..... +...+-+=+|-|+
T Consensus 114 r~~~~~~~~~ag~~--~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gt 161 (333)
T TIGR00904 114 RRAVKESALSAGAR--EVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGT 161 (333)
T ss_pred HHHHHHHHHHcCCC--eEEEecCHHHHHHhcCCcccCCceEEEEEcCCCe
Confidence 45577788766665 4789999999998754432 2233334456555
No 93
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=58.14 E-value=28 Score=35.33 Aligned_cols=69 Identities=25% Similarity=0.389 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEE-E
Q 011505 381 KTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIV-I 459 (484)
Q Consensus 381 ~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~-i 459 (484)
.++.-||++|.+|. +.++++.+.. ..|.+.||+. ++|.+++.+++.+. . .+. +
T Consensus 217 dI~aGl~~sia~rv--------~~~~~~~~i~---------~~v~~~GGva-~N~~l~~al~~~Lg----~----~v~~~ 270 (293)
T TIGR03192 217 MVIAAYCQAMAERV--------VSLLERIGVE---------EGFFITGGIA-KNPGVVKRIERILG----I----KAVDT 270 (293)
T ss_pred HHHHHHHHHHHHHH--------HHHhcccCCC---------CCEEEECccc-ccHHHHHHHHHHhC----C----CceeC
Confidence 35567899999984 3334444321 3478999974 67777777776552 1 222 1
Q ss_pred E-EcCChhHHHHHHHHH
Q 011505 460 E-HSNDGSGIGAALLAA 475 (484)
Q Consensus 460 ~-~~~Dgs~iGAAl~Aa 475 (484)
. ...-.+-+|||++|.
T Consensus 271 p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 271 KIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCccHHHHHHHHHHHH
Confidence 1 134466788888874
No 94
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=56.61 E-value=58 Score=35.52 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=42.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
.+=+||+|-.++|..+++..+...+++....+...+...+.. +. .++-.+...+++..|.+.
T Consensus 7 ~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~e~i~r~~~~L~~F~~~ 70 (496)
T PRK11031 7 LYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDNALSNEAMERGWQCLRLFAER 70 (496)
T ss_pred EEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCCCcCHHHHHHHHHHHHHHHHH
Confidence 577999999999999999865444455443344556544422 21 357788899999999764
No 95
>PRK00047 glpK glycerol kinase; Provisional
Probab=56.31 E-value=47 Score=36.01 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|.-+...+-.+-+..+. +...|.+.||. .+.+.+.+.+...+. ..|......+
T Consensus 376 ~l~rAvlEgia~~~r~~~e~l~~~~g~--------~~~~i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~~~~e 438 (498)
T PRK00047 376 HIIRATLESIAYQTRDVLDAMQADSGI--------RLKELRVDGGA-VANNFLMQFQADILG--------VPVERPVVAE 438 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCceEEEecCc-ccCHHHHHHHHHhhC--------CeeEecCccc
Confidence 445566665554444444333322232 11345555553 578888877776543 2455545678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 439 ~~a~GaA~~A~~~~ 452 (498)
T PRK00047 439 TTALGAAYLAGLAV 452 (498)
T ss_pred chHHHHHHHHhhhc
Confidence 99999999998765
No 96
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=55.44 E-value=35 Score=31.88 Aligned_cols=50 Identities=16% Similarity=0.286 Sum_probs=35.3
Q ss_pred EEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 98 YALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
++||.||||-=+.+++-+.+ ++. ..+.|+. .+++..=|.+.|...+...+
T Consensus 2 igIDvGGT~TD~v~~d~~~~---~~~----~~K~~Tt-----~~d~~~gi~~al~~l~~~~~ 51 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDEDTG---VVA----TAKVPTT-----PDDPAEGILEALDALLEESG 51 (176)
T ss_pred eeEecCCCcEEEEEEeCCCC---EEE----EEEeCCC-----CcCHHHHHHHHHHhhhcccC
Confidence 79999999999999887642 442 2456653 45667777788887776543
No 97
>PRK04123 ribulokinase; Provisional
Probab=54.95 E-value=45 Score=36.66 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|.-..-.+-.+-+ .+. +...|.+.||...+.+.+.+.+-..+. ..|......+
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~-~g~--------~~~~i~~~GGg~s~s~~w~Qi~ADv~g--------~pV~~~~~~e 474 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFED-QGV--------PVEEVIAAGGIARKNPVLMQIYADVLN--------RPIQVVASDQ 474 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCC--------CcceEEEeCCCcccCHHHHHHHHHhcC--------CceEecCccc
Confidence 35556666444444333333322 222 113566777765578878776665442 2454445678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+...
T Consensus 475 ~~alGaA~lA~~~~ 488 (548)
T PRK04123 475 CPALGAAIFAAVAA 488 (548)
T ss_pred cchHHHHHHHHHHh
Confidence 99999999998754
No 98
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=54.77 E-value=52 Score=35.65 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|..+...+-.+-+..+. ....|.+.||.. +++.+.+.+...+. ..|......+
T Consensus 372 ~l~rAvlEgia~~~~~~~~~l~~~~g~--------~~~~i~~~GGga-~s~~w~Qi~ADv~g--------~pv~~~~~~e 434 (493)
T TIGR01311 372 HIARAALEAIAFQTRDVLEAMEKDAGV--------EITKLRVDGGMT-NNNLLMQFQADILG--------VPVVRPKVTE 434 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCceEEEecccc-cCHHHHHHHHHhcC--------CeeEecCCCc
Confidence 556667765555444444333221122 113455666643 78888887776543 2455545678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 435 ~~alGaA~~a~~~~ 448 (493)
T TIGR01311 435 TTALGAAYAAGLAV 448 (493)
T ss_pred chHHHHHHHHHhhc
Confidence 99999999998765
No 99
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=54.53 E-value=2.1e+02 Score=28.91 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCC--CcEEEEEEccCc
Q 011505 195 VVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNK--DVVAAVILGTGS 243 (484)
Q Consensus 195 v~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~--~~~iglIlGTG~ 243 (484)
-.+.+.+++++.|++ .+.++|..++++++...... ...+-+=+|-|+
T Consensus 115 ~r~~~~~~~e~~g~~--~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gt 163 (335)
T PRK13930 115 ERRAVREAAEHAGAR--EVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGT 163 (335)
T ss_pred HHHHHHHHHHHcCCC--eEEecccHHHHHHhcCCCcCCCCceEEEEeCCCe
Confidence 346677788766665 47899999999987654322 222333445444
No 100
>PRK03657 hypothetical protein; Validated
Probab=53.61 E-value=39 Score=31.56 Aligned_cols=68 Identities=24% Similarity=0.457 Sum_probs=45.6
Q ss_pred HcCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Ccee-eEEEEEeCCceEEEEEEEeCC
Q 011505 47 KCRTPAAKLKQ---VADAMTVEMHAGLASEGGSKLKMIISYVDNLPTG----DEKG-TYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 47 ~~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G----~E~G-~~laiDlGGTnlRv~~V~l~g 116 (484)
.+.+|.+.|++ ++.....+|-+|..+..++++..--|-+.. |+| ++.| .|++|...+. ...-...+.|
T Consensus 70 lLgV~~~~i~~~gavS~e~A~~MA~g~~~~~~aDiala~TG~AG-P~g~~~~kpvGtV~iai~~~~~-~~~~~~~~~g 145 (170)
T PRK03657 70 ILSVSQQSLERYSAVSEAVVAEMATGAIERADADISIAISGYGG-PEGGEDGTPAGTVWFAWNIKGQ-TYTARMHFAG 145 (170)
T ss_pred hcCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeccccC-CCCCCCCCCCeEEEEEEEcCCc-EEEEEEecCC
Confidence 35678888877 788888888888766555777777777764 664 3456 5889877654 4443444444
No 101
>PRK13326 pantothenate kinase; Reviewed
Probab=53.48 E-value=28 Score=34.76 Aligned_cols=45 Identities=13% Similarity=0.249 Sum_probs=31.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHH
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAA 149 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (484)
..|+||+|-||+++++.+ ++ +++. .|+++++. ..+.++++.++..
T Consensus 7 ~~L~IDiGNT~ik~glf~-~~---~l~~----~~r~~t~~-~~t~de~~~~l~~ 51 (262)
T PRK13326 7 SQLIIDIGNTSISFALYK-DN---KMQI----FCKLKTKL-DLSFDELYSFLKE 51 (262)
T ss_pred EEEEEEeCCCeEEEEEEE-CC---EEEE----EEEeccCC-CCCHHHHHHHHhc
Confidence 579999999999999997 32 2442 26777765 3466777666654
No 102
>PRK10331 L-fuculokinase; Provisional
Probab=51.47 E-value=63 Score=34.75 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCCh
Q 011505 386 LCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDG 465 (484)
Q Consensus 386 i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dg 465 (484)
+.++|++=-|.-+.-.+-.+ ++.+... .+..++++|+ .+++.+.+.+...+. ..|.+....++
T Consensus 363 l~rAvlEgia~~~~~~~~~l-~~~~~~~------~~~i~~~GGg--a~s~~w~Qi~Advlg--------~pV~~~~~~e~ 425 (470)
T PRK10331 363 FYRAALEGLTAQLKRNLQVL-EKIGHFK------ASELLLVGGG--SRNALWNQIKANMLD--------IPIKVLDDAET 425 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHhcCCC------CceEEEEccc--ccCHHHHHHHHHhcC--------CeeEecCcccc
Confidence 45566665454444444433 2232100 1234444444 478888777766543 24555556789
Q ss_pred hHHHHHHHHHHhc
Q 011505 466 SGIGAALLAASHS 478 (484)
Q Consensus 466 s~iGAAl~Aa~~~ 478 (484)
+.+|||++|++..
T Consensus 426 ~a~GaA~la~~~~ 438 (470)
T PRK10331 426 TVAGAAMFGWYGV 438 (470)
T ss_pred hHHHHHHHHHHhc
Confidence 9999999998865
No 103
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=51.33 E-value=80 Score=31.91 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=39.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
|=+||+|-.++|..+.++.+....++........+.+.+.. +. .++-.+.+.+++..|.+.
T Consensus 2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g~i~~e~i~~~~~~l~~f~~~ 64 (300)
T TIGR03706 2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTGRLSEEAIERALEALKRFAEL 64 (300)
T ss_pred eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 45899999999999999864433444333334555555422 11 346677788888888764
No 104
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=51.22 E-value=1.8e+02 Score=29.62 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHH
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEEL 448 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l 448 (484)
.+..++.|+.+++-.|+-+|-.|-+..-.+.. +...|++.||+. +...|.+.|.+++.-+
T Consensus 264 ~~~Gd~~a~~~~~AmayQVaKeIG~~savL~G--------~vDaIvLTGGiA-~~~~f~~~I~~~v~~i 323 (358)
T COG3426 264 IEQGDEKAKLAYEAMAYQVAKEIGAMSAVLKG--------KVDAIVLTGGIA-YEKLFVDAIEDRVSWI 323 (358)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHhhhhhcCC--------CCCEEEEecchh-hHHHHHHHHHHHHhhh
Confidence 34445666666666666665555444444433 347899999984 6778888998887543
No 105
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=50.78 E-value=80 Score=31.61 Aligned_cols=73 Identities=26% Similarity=0.338 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
-++..-+|++|.+|.+.++ ++++.. ...|.+.||+. +++.+.+.+++.+... ...+.+
T Consensus 187 edI~aGl~~sia~r~~~~~--------~~~~~~--------~~~v~~~GGva-~n~~~~~~le~~l~~~-----~~~~~v 244 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLL--------KSLGAL--------DGTVLCTGGLA-LDAGLLEALKDAIQEA-----KMAVAA 244 (262)
T ss_pred HHHHHHHHHHHHHHHHHHH--------hccCCC--------CCcEEEECccc-ccHHHHHHHHHHhccC-----CcceEe
Confidence 3455678888888765443 344331 13588999964 6788888888766321 012333
Q ss_pred EEcCC---hhHHHHHHHH
Q 011505 460 EHSND---GSGIGAALLA 474 (484)
Q Consensus 460 ~~~~D---gs~iGAAl~A 474 (484)
..-++ -+-+|||++|
T Consensus 245 ~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 245 ENHPDAIYAGAIGAALWG 262 (262)
T ss_pred cCCCcchHHHHHHHHHcC
Confidence 32233 4566777653
No 106
>PRK13320 pantothenate kinase; Reviewed
Probab=46.68 E-value=45 Score=32.86 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=16.6
Q ss_pred eEEEEEeCCceEEEEEEE
Q 011505 96 TYYALDLGGTNFRVLRVH 113 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~ 113 (484)
.+|.||+|.|+++.++++
T Consensus 3 M~L~iDiGNT~ik~~~~~ 20 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFE 20 (244)
T ss_pred eEEEEEeCCCcEEEEEEE
Confidence 379999999999999997
No 107
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=46.30 E-value=1.6e+02 Score=26.31 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.1
Q ss_pred eeeEEEEEeCCceEEEEEEEeCC
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g 116 (484)
.+.+||||+|-..+=+++.+..+
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCCC
Confidence 35699999998877777665544
No 108
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=45.77 E-value=96 Score=34.04 Aligned_cols=49 Identities=18% Similarity=0.306 Sum_probs=33.2
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.+.||...+.+.+.+.+...+ + ..|+.....+++.+|||++|+...
T Consensus 437 ~~i~~~GGg~a~s~~w~Qi~Adv~----g----~pV~~~~~~e~~a~GaA~lA~~~~ 485 (536)
T TIGR01234 437 EELMAAGGIARKNPVIMQIYADVT----N----RPLQIVASDQAPALGAAIFAAVAA 485 (536)
T ss_pred ceEEEeCCccccCHHHHHHHHHhh----C----CeeEeccCCcchhHHHHHHHHHHc
Confidence 346666666446777777555443 2 356555567899999999998765
No 109
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=44.77 E-value=57 Score=29.40 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=44.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEE 161 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~ 161 (484)
.+.||+|=|+..+++++.+.+....+......++.++..- +.+++=+|- ..+..|+++++.+
T Consensus 2 ~vCGVELkgneaii~ll~~~~~~~~~pdcr~~k~~l~~~~---~~~~vr~Fq-~~f~kl~~dy~Vd 63 (138)
T PF11215_consen 2 KVCGVELKGNEAIICLLSLDDGLFQLPDCRVRKFSLSDDN---STEEVRKFQ-FTFAKLMEDYKVD 63 (138)
T ss_pred eEEEEEEecCeEEEEEEecCCCceECCccceeEEEcCCCc---cHHHHHHHH-HHHHHHHHHcCCC
Confidence 3679999999999999999777666666666677777653 344554443 5577788777654
No 110
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=44.17 E-value=47 Score=35.34 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 381 KTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 381 ~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
.++.-+|++|.+|.+.+ +.+..+ ....|.+.||+. +++.+.+.+++.+.
T Consensus 358 DIaAGL~~SIA~Rv~s~--------l~r~~~--------i~~~VvftGGvA-~N~gvv~aLe~~L~ 406 (432)
T TIGR02259 358 DILAGLHRAIILRAISI--------ISRSGG--------ITDQFTFTGGVA-KNEAAVKELRKLIK 406 (432)
T ss_pred HHHHHHHHHHHHHHHHH--------HhcccC--------CCCCEEEECCcc-ccHHHHHHHHHHHc
Confidence 45557888888887665 333322 124689999986 67888888877664
No 111
>PRK15027 xylulokinase; Provisional
Probab=43.92 E-value=1.1e+02 Score=32.90 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=27.2
Q ss_pred cCCC-ceEEEEEechHHHHhcccccCCCcEEEEEEccCc
Q 011505 206 QGLD-MSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGS 243 (484)
Q Consensus 206 ~gl~-v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~ 243 (484)
-|++ +.|++-..|+.+.+++.--.. ...+.+++||+.
T Consensus 220 ~GL~~~pV~~g~~D~~aa~~g~g~~~-~g~~~~s~GTs~ 257 (484)
T PRK15027 220 WGMATVPVVAGGGDNAAGAVGVGMVD-ANQAMLSLGTSG 257 (484)
T ss_pred hCCCCCeEEecccHHHHHHhccCccc-CCcEEEEecCce
Confidence 3764 667777889999999765443 456788999974
No 112
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=42.50 E-value=1.1e+02 Score=32.85 Aligned_cols=77 Identities=10% Similarity=0.137 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.+.++|++=-|.-..-.+-.+ .+.+.. +...|.+.||- .++|.+.+.+...+. ..|.+....+
T Consensus 366 ~l~rAvlEgia~~~r~~~e~l-~~~~~~-------~~~~i~~~GGg-a~s~~w~Qi~Adv~g--------~pV~~~~~~e 428 (465)
T TIGR02628 366 HIYRAALEGLTAQLKRNLQML-EQIGQF-------KASELLLVGGG-SKNTLWNQIRANMLD--------IPVKVVDDAE 428 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhcCC-------CcceEEEecCc-cCCHHHHHHhhhhcC--------CeeEeccCCc
Confidence 456666665554444444333 323210 11234444443 477877776655432 2455555678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 429 ~~~lGaA~~a~~a~ 442 (465)
T TIGR02628 429 TTVAGAAMFGFYGV 442 (465)
T ss_pred chHHHHHHHHHHhc
Confidence 89999999999876
No 113
>PLN02295 glycerol kinase
Probab=42.18 E-value=1e+02 Score=33.54 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=33.1
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.+.||. .+.+.+.+.+-..+. ..|.....++++.+|||++|++..
T Consensus 415 ~i~~~GGg-a~s~~w~Qi~ADv~g--------~pV~~~~~~e~~alGaA~~A~~~~ 461 (512)
T PLN02295 415 LLRVDGGA-TANNLLMQIQADLLG--------SPVVRPADIETTALGAAYAAGLAV 461 (512)
T ss_pred eEEEeccc-hhCHHHHHHHHHhcC--------CceEecCccccHHHHHHHHHHhhc
Confidence 46666664 478888777766543 245544567899999999998765
No 114
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=41.04 E-value=31 Score=36.65 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.3
Q ss_pred eeEEEEEeCCceEEEEEEEeCC
Q 011505 95 GTYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g 116 (484)
.++++||+|+|+.++.+++.++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 3799999999999999998654
No 115
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=39.89 E-value=93 Score=34.17 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=36.3
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
.++.++||+. ++|.|.+....-+ + ..|.+-..-|..++|||++++++++.
T Consensus 416 ~~L~~~GG~s-~N~ll~Q~~ADi~----g----~pv~~p~~~e~~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 416 STLRVCGGLS-KNPLLMQLQADIL----G----LPVVRPQDVEAVALGAAMLAGAASGK 465 (516)
T ss_pred ceeeeccccc-cCHHHHHHHHHHh----C----CccccccchhHHHHHHHHHHHhhcCC
Confidence 4599999986 6787877766543 3 24444445577999999999998854
No 116
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=39.59 E-value=1.3e+02 Score=32.40 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|.-..-.+-.+-...+.. ...|-+.||. .+.+.+.+.+...+. ..|... ..+
T Consensus 348 ~l~RAvlEgva~~~r~~l~~l~~~~g~~--------~~~i~~~GGg-a~s~~w~Qi~ADvlg--------~pV~~~-~~e 409 (471)
T PRK10640 348 ELARCIFDSLALLYADVLHELAQLRGEP--------FSQLHIVGGG-CQNALLNQLCADACG--------IRVIAG-PVE 409 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--------cceEEEECCh-hhhHHHHHHHHHHhC--------CCeeeC-Chh
Confidence 5677777776766666665554432321 1245444554 467777766665542 234322 236
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 410 a~alGaa~~a~~a~ 423 (471)
T PRK10640 410 ASTLGNIGIQLMTL 423 (471)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999998765
No 117
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=37.29 E-value=1.1e+02 Score=27.75 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=17.7
Q ss_pred eeEEEEEeCCceEEEEEEEeCC
Q 011505 95 GTYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g 116 (484)
+.+||+|+|--.+=|++-+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 4789999999888888776644
No 118
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=36.60 E-value=15 Score=33.59 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=37.2
Q ss_pred ECccHHHHHHHHHHhcCCCce-EEEEEec------hHHHHhcccccCCCcEEE-EEEccCcceEEEcc
Q 011505 191 VGRDVVEELSRAMAKQGLDMS-VSALVND------TVGTLAGGRYTNKDVVAA-VILGTGSNAAYVER 250 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~-v~alvND------tvatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 250 (484)
.|.++++.|.+.|+++|++|. +-.--+| -.+..++.+..+....-| +|+|||++.++.-+
T Consensus 10 aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGtGiG~siaAN 77 (148)
T PRK05571 10 AGFELKEEIIEHLEELGHEVIDLGPDSYDASVDYPDYAKKVAEAVVAGEADRGILICGTGIGMSIAAN 77 (148)
T ss_pred chHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHHh
Confidence 367889999999998888752 1111112 234444554444444444 58999999988653
No 119
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=36.59 E-value=1.6e+02 Score=31.58 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
++.++|++=-|.-..-.+-.+-+..+.. .+.+++++|+ .+.+.+.+.+-..+. ..|... .++
T Consensus 360 ~l~RAv~Egva~~~r~~~e~l~~~~~~~-------~~~i~~~GGg--a~s~~w~Qi~ADvlg--------~pV~~~-~~e 421 (454)
T TIGR02627 360 ELARCIFDSLALLYRQVLLELAELRGKP-------ISQLHIVGGG--SQNAFLNQLCADACG--------IRVIAG-PVE 421 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCC-------cCEEEEECCh--hhhHHHHHHHHHHhC--------CceEcC-Cch
Confidence 4566666655555554444443321221 1234444444 367777776665442 244333 366
Q ss_pred hhHHHHHHHHHHhcc
Q 011505 465 GSGIGAALLAASHSK 479 (484)
Q Consensus 465 gs~iGAAl~Aa~~~~ 479 (484)
++.+|||++|++..-
T Consensus 422 ~~a~GaA~~a~~~~G 436 (454)
T TIGR02627 422 ASTLGNIGVQLMALD 436 (454)
T ss_pred HHHHHHHHHHHHhcC
Confidence 899999999998763
No 120
>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]
Probab=36.25 E-value=32 Score=34.79 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.0
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCC
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~ 117 (484)
...|+++|-|.||||+-+++-+|.
T Consensus 4 ~~~~i~iDWGTT~~R~wL~~~dg~ 27 (306)
T COG3734 4 EPAYIAIDWGTTNLRAWLVRGDGA 27 (306)
T ss_pred CceEEEEecCCccEEEEEEcCCcc
Confidence 467999999999999999987764
No 121
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=36.12 E-value=21 Score=32.28 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=36.3
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEech-----HHHHhcccccCCCcEEE-EEEccCcceEEEcc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDT-----VGTLAGGRYTNKDVVAA-VILGTGSNAAYVER 250 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie~ 250 (484)
.|.++++.|.+.|+.+|+.|.=..- +|. .+..++.+....+...| +|+|||++.++.-+
T Consensus 10 aG~~lK~~l~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 10 AGFELKEVVKDYLEDNKYEVVDVTE-EGAEDFVDSTLAVAKEVNKSEDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred chHHHHHHHHHHHHHCCCEEEECCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCChhhhhhhh
Confidence 3678999999999988876521111 232 23334444333333344 58999999988653
No 122
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=36.07 E-value=1.7e+02 Score=32.22 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.+.++|++=-|.-+.-.+-.+-+ .+. ....|.+.||.. +.+.+.+.+-..+. ..|+.....+
T Consensus 417 ~~~rAvlEgiaf~~r~~~e~l~~-~g~--------~~~~i~~~GGga-~s~~w~Qi~ADvlg--------~pV~~~~~~e 478 (541)
T TIGR01315 417 LLYYATMEFIAYGTRQIVEAMNT-AGH--------TIKSIFMSGGQC-QNPLLMQLIADACD--------MPVLIPYVNE 478 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCC--------CccEEEEecCcc-cCHHHHHHHHHHHC--------CeeEecChhH
Confidence 55666666555544444433322 232 113566777754 67777776665442 3565556778
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|++..
T Consensus 479 ~~alGaA~lA~~~~ 492 (541)
T TIGR01315 479 AVLHGAAMLGAKAA 492 (541)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998764
No 123
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=35.95 E-value=3.9e+02 Score=25.44 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=83.4
Q ss_pred CCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCC
Q 011505 294 SLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEIS 373 (484)
Q Consensus 294 s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~ 373 (484)
|+.-|.=.||--.=..|=+|..|.-+..+++...||++.+-..|--||. ++.+. ++-..+...|.. ++++
T Consensus 54 sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~--------~r~rr-~dr~aa~~llar-~~l~ 123 (223)
T COG4619 54 SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQ--------IRNRR-PDRAAALDLLAR-FALP 123 (223)
T ss_pred CCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchH--------HhccC-CChHHHHHHHHH-cCCc
Confidence 4444656777777778889999999999999999999888777766663 33333 344455555554 6654
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcc
Q 011505 374 STSLSMRKTIVELCNIVATRGARLAAA--GILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGE 451 (484)
Q Consensus 374 ~~~~~d~~~~~~i~~~V~~RaA~l~Aa--~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~ 451 (484)
+ ..+.+|...|.+- -.+|+++.+.- .+...-.|-+...-.+.=.+.+++.+..++.+
T Consensus 124 ~-------------~~L~k~it~lSGGE~QriAliR~Lq~--------~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~ 182 (223)
T COG4619 124 D-------------SILTKNITELSGGEKQRIALIRNLQF--------MPKILLLDEITSALDESNKRNIEEMIHRYVRE 182 (223)
T ss_pred h-------------hhhcchhhhccchHHHHHHHHHHhhc--------CCceEEecCchhhcChhhHHHHHHHHHHHhhh
Confidence 1 2344555555542 34566665543 12567778777777777777787777777754
No 124
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=35.84 E-value=1.7e+02 Score=26.48 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=34.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
++||||.|-+|+=.++++..++...++. ....+.+.+. +..+=...|.+.|.+++++..
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~~--~g~i~t~~~~---~~~~rl~~I~~~l~~~i~~~~ 59 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYLA--SGVIRTSSDA---PLPSRLKTIYDGLNEVIDQFQ 59 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEEE--eeEEECCCCC---CHHHHHHHHHHHHHHHHHHhC
Confidence 4799999999999999988664333332 2222322211 222334556667777776554
No 125
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=34.48 E-value=23 Score=32.09 Aligned_cols=59 Identities=12% Similarity=0.175 Sum_probs=35.5
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEechH-----HHHhcccccCCCcEEE-EEEccCcceEEEcc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDTV-----GTLAGGRYTNKDVVAA-VILGTGSNAAYVER 250 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDtv-----atlla~~y~~~~~~ig-lIlGTG~Na~yie~ 250 (484)
.|.++++.|.+.|+.+|+.|.=..- +|++ +.-++.+-...+...| +|+|||++.++.-+
T Consensus 10 ~G~~lK~~i~~~L~~~G~eV~D~G~-~~~~dYpd~a~~va~~V~~~e~~~GIliCGtGiG~siaAN 74 (141)
T TIGR01118 10 AGKRLKDVIKNFLVDNGFEVIDVTE-GDGQDFVDVTLAVASEVQKDEQNLGIVIDAYGAGSFMVAT 74 (141)
T ss_pred chHHHHHHHHHHHHHCCCEEEEcCC-CCCCCcHHHHHHHHHHHHcCCCceEEEEcCCCHhHhhhhh
Confidence 3678889999999988886421111 3331 2223333223344445 58999999988653
No 126
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=34.42 E-value=1.3e+02 Score=32.83 Aligned_cols=117 Identities=15% Similarity=0.200 Sum_probs=62.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccC--cchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGT--SDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~--~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
.+-+||+|-.+||..+++......+++........+-+.+.... .++-.+.-.++++.|.+.-.... ..+...++
T Consensus 4 ~~A~IDiGSNS~rlvV~~~~~~~~~~l~~~k~~vrLgegl~~~g~L~~eai~R~~~aL~~f~e~~~~~~---~~~v~~vA 80 (492)
T COG0248 4 RVAAIDLGSNSFRLVVAEITPGSFQVLFREKRIVRLGEGLDATGNLSEEAIERALSALKRFAELLDGFG---AEEVRVVA 80 (492)
T ss_pred eEEEEEecCCeEEEEEEeccCCccchhhhhhhheehhcCccccCCcCHHHHHHHHHHHHHHHHHHhhCC---CCEEEEeh
Confidence 46799999999999999976333344433222344444443211 45667778888888876432100 01111111
Q ss_pred eeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccc
Q 011505 174 FTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGR 227 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~ 227 (484)
- ....++. .+.++.+..++.+ |++++|+.=.--+-=++++..
T Consensus 81 T--------sA~R~A~-N~~eFl~rv~~~~---G~~ievIsGeeEArl~~lGv~ 122 (492)
T COG0248 81 T--------SALRDAP-NGDEFLARVEKEL---GLPIEVISGEEEARLIYLGVA 122 (492)
T ss_pred h--------HHHHcCC-CHHHHHHHHHHHh---CCceEEeccHHHHHHHHHHHH
Confidence 0 0001110 4556767777777 999987543333333333333
No 127
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=33.61 E-value=1.2e+02 Score=32.33 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH-HHhcccCCccEEEEEcCChhHHHHHHHHH
Q 011505 397 LAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE-ELLGEELFKNIVIEHSNDGSGIGAALLAA 475 (484)
Q Consensus 397 l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~-~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa 475 (484)
-+.+|+-.++++.+-.. ..-..|-+-|++=.+-. .+.+++ -++++....+| +...++++.||..+..
T Consensus 309 Ai~aGi~~Ll~~agi~~-----~di~~v~lAG~FG~~l~-----~~~a~~iGLlP~~~~~kv--~~~GN~al~GA~~~Ll 376 (412)
T PF14574_consen 309 AIRAGIEILLEEAGISP-----EDIDRVYLAGGFGNYLD-----PESAIRIGLLPDVPAEKV--RFVGNAALAGARMALL 376 (412)
T ss_dssp HHHHHHHHHHHHTT--G-----GG--EEEEECSS-SEEE-----HHHHHHTTSS--S-GGGE--EEEC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCH-----HHccEEEEeCcccccCC-----HHHHhhcCCCCCccccCE--EEECcHHHHHHHHHhC
Confidence 35577778888877421 12256888888743322 223332 22444333455 4457899999987654
No 128
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=32.93 E-value=90 Score=31.02 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=29.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAA 149 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (484)
+|.||+|-||+.+++.+ ++ .+.+ .|+++++.. .+.+|+..++.+
T Consensus 2 ~L~iDiGNT~~~~a~~~-~~---~~~~----~~r~~t~~~-~~~del~~~~~~ 45 (251)
T COG1521 2 LLLIDIGNTRIVFALYE-GG---KVVQ----TWRLATEDL-LTEDELGLQLHN 45 (251)
T ss_pred eEEEEeCCCeEEEEEec-CC---eEEE----EEeeccccc-ccHHHHHHHHHH
Confidence 68999999999999987 33 2443 377777664 245566555443
No 129
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=32.89 E-value=1.3e+02 Score=34.56 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=29.5
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEE---E-cCChhHHHHHHHHH
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIE---H-SNDGSGIGAALLAA 475 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~---~-~~Dgs~iGAAl~Aa 475 (484)
..|++.|||+. +..+++.+.+.+++. .-++.+. + ++.|-.+|.|++||
T Consensus 660 ~~VvLSGGVfq-N~~L~~~L~~~L~~~-----g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 660 HKIVISGGVFY-NRLLLERLAKYLKGL-----GFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CeEEEeccHHH-HHHHHHHHHHHHHhC-----CCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 47999999985 556777777766431 1122221 2 55566688877764
No 130
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=31.77 E-value=2e+02 Score=29.28 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=17.5
Q ss_pred eeEEEEEeCCceEEEEEEE
Q 011505 95 GTYYALDLGGTNFRVLRVH 113 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~ 113 (484)
-.+++||+|-|+.|+.+++
T Consensus 32 m~~~GIDiGStt~K~Vlld 50 (293)
T TIGR03192 32 IITCGIDVGSVSSQAVLVC 50 (293)
T ss_pred cEEEEEEeCchhEEEEEEe
Confidence 3789999999999999997
No 131
>PF13941 MutL: MutL protein
Probab=30.69 E-value=5.2e+02 Score=28.09 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=37.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~ 157 (484)
.+|.+|+|.|.-|+.+|++.....+++-+ -.-|+.+. + +++..-+-+++.+.-+.
T Consensus 1 ~~L~~DiGST~Tk~~l~d~~~~~~~~ig~----a~apTTv~--~-~Dv~~G~~~A~~~l~~~ 55 (457)
T PF13941_consen 1 DVLVVDIGSTYTKVTLFDLVDGEPRLIGQ----AEAPTTVE--P-GDVTIGLNNALEQLEEQ 55 (457)
T ss_pred CEEEEEeCCcceEEeEEeccCCccEEEEE----EeCCCCcC--c-ccHHHHHHHHHHHHHHh
Confidence 37999999999999999975555556644 23566662 2 45666666777765443
No 132
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=30.60 E-value=2.2e+02 Score=25.71 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=30.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhccc
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESE 160 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~ 160 (484)
+||||-|-++.-.++++..++.-..+. +...+.+... +..+=...|.+.+.++++++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~--~G~I~t~~~~---~~~~Rl~~I~~~l~~li~~~~P 59 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID--YGTIKTSSKD---SLPERLKEIYEELEELIEEYNP 59 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE--EEEEE---S-----HHHHHHHHHHHHHHHHHHH--
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE--eCeEECCCCC---CHHHHHHHHHHHHHHHHHhhCC
Confidence 589999999999999999665433442 2222323221 2223334566666666666543
No 133
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=30.49 E-value=1.2e+02 Score=22.97 Aligned_cols=35 Identities=6% Similarity=0.137 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 011505 34 CGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHA 68 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~ 68 (484)
...++++++.+.+.|..+.++++.=+..|..+|.+
T Consensus 29 ~~t~~ei~~~l~~~y~~~~~~~~~dv~~fl~~L~~ 63 (68)
T PF05402_consen 29 PRTVEEIVDALAEEYDVDPEEAEEDVEEFLEQLRE 63 (68)
T ss_dssp SS-HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999999998864
No 134
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=29.79 E-value=77 Score=32.64 Aligned_cols=45 Identities=13% Similarity=0.087 Sum_probs=29.3
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 011505 366 LKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGR 411 (484)
Q Consensus 366 l~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~ 411 (484)
|...+|.+ ...-......++|+.+.+.+....+.+|--+....+.
T Consensus 234 lAr~lg~d-~~e~~~~~~~~~A~~i~~~~~~~m~~ai~~v~~~~G~ 278 (318)
T TIGR03123 234 LARMVCAD-LEELGEEDVRNLAKYYYEAQLEQLTEAIEEVLERYGL 278 (318)
T ss_pred HHHHhCCC-hhHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45556653 1111133466888899888888888888777776554
No 135
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=29.12 E-value=1.1e+02 Score=28.93 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=15.7
Q ss_pred EEEEEeCCceEEEEEEEeC
Q 011505 97 YYALDLGGTNFRVLRVHLG 115 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~ 115 (484)
+|.||+|-|++++++.+-+
T Consensus 1 ~L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEEE-SSEEEEEEEETT
T ss_pred CEEEEECCCeEEEEEEECC
Confidence 6899999999999998654
No 136
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=28.95 E-value=2.1e+02 Score=28.59 Aligned_cols=21 Identities=14% Similarity=0.359 Sum_probs=18.4
Q ss_pred eEEEEEeCCceEEEEEEEeCC
Q 011505 96 TYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g 116 (484)
.|++||+|-|+.++.+++.++
T Consensus 2 ~~~GIDiGStttK~Vlid~~~ 22 (262)
T TIGR02261 2 ITAGIDIGTGAIKTVLFEVDG 22 (262)
T ss_pred eEEEEEcCcccEEEEEEecCC
Confidence 479999999999999998644
No 137
>PLN02669 xylulokinase
Probab=28.12 E-value=2.1e+02 Score=31.74 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=29.5
Q ss_pred cCCC--ceEEEEEechHHHHhcccccCCCcEEEEEEccCcc
Q 011505 206 QGLD--MSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSN 244 (484)
Q Consensus 206 ~gl~--v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~N 244 (484)
.|++ +.|++-.-|..+++++.--..+ ..+.+++||.+-
T Consensus 267 ~Gl~~g~pV~~g~gD~~a~~~G~g~~~~-g~~~~slGTs~~ 306 (556)
T PLN02669 267 FGFSSNCLVVQWSGDNPNSLAGLTLSTP-GDLAISLGTSDT 306 (556)
T ss_pred hCCCCCCEEEEecchHHHHHhccCCCCC-CeEEEEEcccce
Confidence 3874 6789999999999998765443 468899999754
No 138
>PRK10753 transcriptional regulator HU subunit alpha; Provisional
Probab=27.01 E-value=1.5e+02 Score=24.42 Aligned_cols=35 Identities=9% Similarity=0.191 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 39 GIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 5 eli~~ia~~~~~s~~~~~~~v~~~~~~i~~~L~~g 39 (90)
T PRK10753 5 QLIDVIADKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677777788999999999999999999999864
No 139
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=26.97 E-value=2.5e+02 Score=28.34 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=26.9
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAE 150 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~ 150 (484)
.++||+|||..|++..+.+++ +.. .+.|++. .+++.+|+.+.
T Consensus 2 ~iGiDiGgT~~Kiv~~~~~~~---~~f-----~~~~~~~----~~~~~~~l~~~ 43 (279)
T TIGR00555 2 RIGIDIGGTLIKVVYEEPKGR---RKF-----KTFETTN----IDKFIEWLKNQ 43 (279)
T ss_pred eEEEEeCcceEEEEEEcCCCc---EEE-----EEeeccc----HHHHHHHHHHH
Confidence 589999999999988765443 332 2233332 34677777543
No 140
>COG1546 CinA Uncharacterized protein (competence- and mitomycin-induced) [General function prediction only]
Probab=26.40 E-value=2.4e+02 Score=26.10 Aligned_cols=68 Identities=26% Similarity=0.548 Sum_probs=47.7
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Ccee-eEEEEEeCCceEEEEEEEeCCC
Q 011505 48 CRTPAAKLKQ---VADAMTVEMHAGLASEGGSKLKMIISYVDNLPTG----DEKG-TYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G----~E~G-~~laiDlGGTnlRv~~V~l~g~ 117 (484)
+.++.+.|.+ |++.-.+||-+|.....++++..--|-|.. |+| ++.| .|+++.+||+ .-+-.+.++|+
T Consensus 65 LgV~~~tL~~~GaVSe~~a~eMA~Ga~~~~~ad~aiaiTGiAG-P~Gg~~~kpvGtV~ig~~~~~~-~~~~~~~~~g~ 140 (162)
T COG1546 65 LGVSPETLEEHGAVSEEVAREMARGAKERAGADIAIAITGIAG-PDGGSEGKPVGTVYIGLAIGGE-AITIRVNFGGD 140 (162)
T ss_pred hCCCHHHHHHcCCcCHHHHHHHHHHHHHhcCCCEEEEEEEeeC-CCCCCCCCCceEEEEEEEcCCc-eEEEEEEcCCC
Confidence 4577777754 788889999999876666778878888865 884 3556 4888888444 33445556654
No 141
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=26.37 E-value=4.4e+02 Score=27.46 Aligned_cols=134 Identities=16% Similarity=0.161 Sum_probs=70.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCC--Cccc-cCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPP--HLMT-GTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~--~~~~-~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
.+||||---...-+++++.+++ ++.........+. .+.. .....=-+.|...|++.+++.+... ++...+
T Consensus 2 ~iLgIETScd~tsvAl~~~~~~---il~~~~~sq~~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~a~~~~----~did~I 74 (345)
T PTZ00340 2 LALGIEGSANKLGVGIVTSDGE---ILSNVRETYITPPGTGFLPRETAQHHREHILSLVKEALEEAKITP----SDISLI 74 (345)
T ss_pred eEEEEEccchhhEEEEEECCCc---EEEEEEeeccccCCCCcCchHHHHHHHHHHHHHHHHHHHHcCCCH----HHCCEE
Confidence 3688998888888999985442 4432211111110 0100 0011223344444555555544322 233445
Q ss_pred eeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCC--CcEEEEEEccCcceEEE
Q 011505 173 GFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNK--DVVAAVILGTGSNAAYV 248 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~--~~~iglIlGTG~Na~yi 248 (484)
++|- .|= +-.|..+|....+-|-.++ ++|+ .=+|--.|.+++..+.++ .. +++.+.=|+..=+.
T Consensus 75 avt~-GPG----l~~~LrVG~~~Ak~LA~a~---~~Pl---igV~HlegHi~a~~l~~~~~~P-l~LlVSGGhT~l~~ 140 (345)
T PTZ00340 75 CYTK-GPG----MGAPLSVGAVVARTLSLLW---GKPL---VGVNHCVAHIEMGRLVTGAENP-VVLYVSGGNTQVIA 140 (345)
T ss_pred EEec-CCC----cHhhHHHHHHHHHHHHHHc---CCCE---eecchHHHHHHHHhhccCCCCC-eEEEEeCCceEEEE
Confidence 4442 110 1111127777788887777 8884 456777788777776421 22 88888888665444
No 142
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=26.26 E-value=45 Score=34.32 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=18.7
Q ss_pred ceeeEEEEEeCCceEEEEEEEe
Q 011505 93 EKGTYYALDLGGTNFRVLRVHL 114 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l 114 (484)
..+..|.+|+|||+..+++|.-
T Consensus 126 ~~~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 126 RIPECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred cCCCEEEEEcCccceeeEEecC
Confidence 3567999999999999999843
No 143
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=25.96 E-value=1.5e+02 Score=24.48 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...+|..+...+.+.|..+|...|...
T Consensus 5 ~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~~L~~g 40 (96)
T TIGR00987 5 AEMSEYLFDELGLSKREAKELVELFFEEIRRALENG 40 (96)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 456777777788999999999999999999999863
No 144
>PRK03661 hypothetical protein; Validated
Probab=25.68 E-value=2.1e+02 Score=26.42 Aligned_cols=56 Identities=21% Similarity=0.369 Sum_probs=39.0
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Ccee-eEEEEEeCC
Q 011505 48 CRTPAAKLKQ---VADAMTVEMHAGLASEGGSKLKMIISYVDNLPTG----DEKG-TYYALDLGG 104 (484)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G----~E~G-~~laiDlGG 104 (484)
+.+|.+.|++ ++.....+|-+|....-++++..--|-+.. |+| ++.| .|++|...+
T Consensus 65 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~ad~~ia~TG~AG-P~g~~~~kpvGtv~i~i~~~~ 128 (164)
T PRK03661 65 IGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSISGIAG-PDGGSEEKPVGTVWFGFASAS 128 (164)
T ss_pred cCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEecccCC-CCCCCCCCCceEEEEEEEeCC
Confidence 5678887877 778888888888765445777777777654 654 4566 588887643
No 145
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=25.65 E-value=1.5e+02 Score=24.54 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 37 ANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 37 ~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
..++++.+.+.+.++..+...+.+.|.++|.+.|+..
T Consensus 5 k~el~~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 41 (99)
T PRK00285 5 KADLAEALFEKVGLSKREAKELVELFFEEIRDALENG 41 (99)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHcC
Confidence 3567778888889999999999999999999999853
No 146
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=25.30 E-value=7.7e+02 Score=26.31 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 389 IVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 389 ~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
..+.|.++++|+-.+.+- +.. ..|++.||+=++.+.+++.+.+.+.
T Consensus 304 ~f~yri~k~Iga~~a~L~---g~v---------DaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 304 VFVYRLAKYIGSYAAALN---GRL---------DAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHhc---CCC---------CEEEEcCccccCCHHHHHHHHhhhh
Confidence 445555666655544431 221 5799999999999999999999885
No 147
>TIGR00199 cinA_cterm competence/damage-inducible protein CinA C-terminal domain. CinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species. Several bacterial species have a protein consisting largely of the C-terminal domain of CinA but lacking the N-terminal domain.
Probab=25.11 E-value=2.8e+02 Score=25.11 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=37.2
Q ss_pred cCCCHHHHHH---HHHHHHHHHHHhhcCCCCCCcceeecccccCCCC----Ccee-eEEEEEe
Q 011505 48 CRTPAAKLKQ---VADAMTVEMHAGLASEGGSKLKMIISYVDNLPTG----DEKG-TYYALDL 102 (484)
Q Consensus 48 ~~~~~~~L~~---i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G----~E~G-~~laiDl 102 (484)
+.+|.+.|++ ++.....+|-+|..+..++++.---|-+.. |+| ++.| .|++|..
T Consensus 53 LgV~~~~i~~~gavS~e~a~~MA~g~~~~~~adi~ia~TG~AG-P~~~~~~~pvGtv~ial~~ 114 (146)
T TIGR00199 53 LGVSQETLARFGAVSEECAAEMALGVKERFGADVGIAISGIAG-PDGGEEEKPGGTVWFIWII 114 (146)
T ss_pred hCCCHHHHHhcCCCCHHHHHHHHHHHHHHcCCCEEEEeeccCC-CCCCCCCCCCeEEEEEEEe
Confidence 5678888877 788888888888765555666666666653 654 3456 4777765
No 148
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=25.08 E-value=3.3e+02 Score=24.14 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=52.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++||||+|-..+=+++-+-.+. +..- . -.|+. .+.+.+++.|.+.+.+ +. +-++-
T Consensus 2 riL~lD~G~kriGiAvsd~~~~---~a~p-l--~~i~~----~~~~~~~~~l~~li~~----~~-----------i~~iV 56 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPLGI---IASP-L--ETIPR----RNREKDIEELKKLIEE----YQ-----------IDGIV 56 (135)
T ss_dssp EEEEEEECSSEEEEEEEETTTS---SEEE-E--EEEEE----CCCCCCHHHHHHHHHH----CC-----------ECEEE
T ss_pred eEEEEEeCCCeEEEEEecCCCC---eEee-e--EEEEC----CCCchHHHHHHHHHHH----hC-----------CCEEE
Confidence 5899999999888888766553 2110 0 12221 2235566666655444 32 23555
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhc--CCCceEEEEEechHHHHhccc
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQ--GLDMSVSALVNDTVGTLAGGR 227 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~--gl~v~v~alvNDtvatlla~~ 227 (484)
+..|.+..+-.+. -..-+..+-+.|+++ ++|| .++|-.--|-.+..
T Consensus 57 vGlP~~~~G~~~~---~~~~v~~f~~~L~~~~~~ipV---~~~DEr~TT~~A~~ 104 (135)
T PF03652_consen 57 VGLPLNMDGSESE---QARRVRKFAEELKKRFPGIPV---ILVDERLTTKEAER 104 (135)
T ss_dssp EEEEBBCTSSC-C---CHHHHHHHHHHHHHHH-TSEE---EEEECSCSHHCCHC
T ss_pred EeCCcccCCCccH---HHHHHHHHHHHHHHhcCCCcE---EEECCChhHHHHHH
Confidence 6667663211111 112333444444433 6774 46676655555443
No 149
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.63 E-value=37 Score=38.49 Aligned_cols=36 Identities=17% Similarity=0.431 Sum_probs=23.7
Q ss_pred cchhHHHHHHHHHHHHhhcccccccCCCCceeeeee--eeeeee
Q 011505 140 SDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT--FSFPVM 181 (484)
Q Consensus 140 ~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft--FSfPv~ 181 (484)
...|||||.+.|.+-+.-... ....++|+- +.|-+-
T Consensus 359 y~~lFD~lV~rvNkam~~~~~------~~~~sIGiLDIYGFEIF 396 (1106)
T KOG0162|consen 359 YARLFDWLVERVNKAMQAFKG------SEEYSIGILDIYGFEIF 396 (1106)
T ss_pred HHHHHHHHHHHHHHHHhcCCC------ccccceeeEEeeeeeec
Confidence 456999999999998863221 124667764 555555
No 150
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=23.33 E-value=1.2e+02 Score=31.39 Aligned_cols=51 Identities=22% Similarity=0.337 Sum_probs=37.2
Q ss_pred EEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE----cCChhHHHHHHHHHHh
Q 011505 424 IAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH----SNDGSGIGAALLAASH 477 (484)
Q Consensus 424 I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~----~~Dgs~iGAAl~Aa~~ 477 (484)
|.+.||. ...|.|.++++..|+.+.++.. .+++.. ...++-+||+++|...
T Consensus 314 Ivl~GG~-S~i~G~~eRL~~eL~~~~~~~~--~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 314 IVLTGGS-SLIPGFKERLQQELRSLLPSST--KVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp EEEESGG-GGSTTHHHHHHHHHHHHSGTTS--TEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred eEEeccc-ccccchHHHHHHHhhhhhhccc--cceeccCchhhhhcccccceeeeccc
Confidence 5555554 4789999999999999866543 555554 4567899999998754
No 151
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=23.33 E-value=1.9e+02 Score=23.21 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=31.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++++.+...++..+...+.+.|..+|.+.|...
T Consensus 4 ~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~~L~~g 39 (90)
T smart00411 4 SELIDAIAEKAGLSKKDAKAAVDAFLEIITEALKKG 39 (90)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 467778888889999999999999999999999853
No 152
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=23.31 E-value=76 Score=32.03 Aligned_cols=20 Identities=25% Similarity=0.514 Sum_probs=15.6
Q ss_pred eEEEEEeCCceEEEEEEEeCC
Q 011505 96 TYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g 116 (484)
..|.+|+|||+.-+++|. +|
T Consensus 78 ~~i~vDmGGTTtDi~~i~-~G 97 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIK-DG 97 (290)
T ss_dssp SEEEEEE-SS-EEEEEEE-TT
T ss_pred CEEEEeCCCCEEEEEEEE-CC
Confidence 589999999999999995 44
No 153
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.19 E-value=62 Score=36.80 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC-CCcceeecc--------cccCCC------------------CCceeeEEEEEeCCce
Q 011505 54 KLKQVADAMTVEMHAGLASEGG-SKLKMIISY--------VDNLPT------------------GDEKGTYYALDLGGTN 106 (484)
Q Consensus 54 ~L~~i~~~f~~em~~gL~~~~~-s~l~Mlpt~--------v~~lP~------------------G~E~G~~laiDlGGTn 106 (484)
.|..+.++|.+.+++-|...+- ..+.|+-|. ....|. |...|.++++|+|||+
T Consensus 210 ~L~pi~~~yl~~v~~~l~~~g~~~~l~~m~sdGgl~~~~~a~~~pv~tI~SGPAagvvGAa~ltg~~~g~~i~~DmGGTS 289 (674)
T COG0145 210 YLSPILRRYLEAVKDALKERGIKARLMVMQSDGGLVSAEEAREKPVETILSGPAAGVVGAAYLTGLKAGNAIVFDMGGTS 289 (674)
T ss_pred eehHHHHHHHHHHHHHHHhcCCCceeEEEecCCccccHHHHhcCCeeeEeeccHHHHHHHHHhcccccCCEEEEEcCCcc
Confidence 5677788888888776654321 223332221 111233 4555569999999999
Q ss_pred EEEEEEEe
Q 011505 107 FRVLRVHL 114 (484)
Q Consensus 107 lRv~~V~l 114 (484)
.-++++.-
T Consensus 290 tDva~i~~ 297 (674)
T COG0145 290 TDVALIID 297 (674)
T ss_pred eeeeeeec
Confidence 99999863
No 154
>TIGR02133 RPI_actino ribose 5-phosphate isomerase. This family is a member of the RpiB/LacA/LacB subfamily (TIGR00689) but lies outside the RpiB equivalog (TIGR01120) which is also a member of that subfamily. Ribose 5-phosphate isomerase is an essential enzyme of the pentose phosphate pathway; a pathway that appears to be present in the actinobacteria. The only candidates for ribose 5-phosphate isomerase in the Actinobacteria are members of this family.
Probab=22.99 E-value=60 Score=29.58 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=36.0
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEE-Eec-h-----HHHHhcccccCCCcEEEE-EEccCcceEEEcc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSAL-VND-T-----VGTLAGGRYTNKDVVAAV-ILGTGSNAAYVER 250 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~al-vND-t-----vatlla~~y~~~~~~igl-IlGTG~Na~yie~ 250 (484)
.|.++++.|.+.|+.+|+.|.=... -.| . .+..++.+....+...|+ |+|||++.+..-+
T Consensus 10 aG~~lK~~l~~~L~~~g~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~~~~~GIliCGtGiG~siaAN 77 (148)
T TIGR02133 10 AGFEYKEALWLDLAAHEPEVCDVGVYDADDDDDYPCFCIAAAEAVARDAADLGIVIGGSGNGEAIAAN 77 (148)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCchHHHHHHHHHHhcCCCceEEEEcCCChhheeeec
Confidence 3677889999999988876421111 001 1 233344444344444554 8999999998753
No 155
>PRK12440 acetate kinase; Reviewed
Probab=22.68 E-value=4.8e+02 Score=27.80 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHH
Q 011505 388 NIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEEL 448 (484)
Q Consensus 388 ~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l 448 (484)
+..+.|.++++|+-.+.+ . +- ..|++.||+=++.+.+++++.+.+.-+
T Consensus 301 d~f~yri~k~Ig~~~a~l-~--gv----------DaiVFTgGIGen~~~vr~~i~~~l~~l 348 (397)
T PRK12440 301 EVFTYRVAKYIASYLAAL-D--SL----------DGIIFTGGIGENSLPIRREILKNLKLL 348 (397)
T ss_pred HHHHHHHHHHHHHHHHHh-C--CC----------CEEEECCccccCcHHHHHHHHhhhhhh
Confidence 345667777777655544 2 22 579999999999999999999988643
No 156
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=22.02 E-value=59 Score=30.38 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=35.5
Q ss_pred ECccHHHHHHHHHHhcCCCce-EEEEEech-----HHHHhcccccCCCcEEE-EEEccCcceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMS-VSALVNDT-----VGTLAGGRYTNKDVVAA-VILGTGSNAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~-v~alvNDt-----vatlla~~y~~~~~~ig-lIlGTG~Na~yie 249 (484)
.|.++++.|.+.|+++|++|. +-.--+|+ ++..++.+....+...| +|+|||++.++.-
T Consensus 10 aG~~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~~~GIliCGTGiG~siaA 75 (171)
T TIGR01119 10 IVTDVKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEAVVSGEADLGVCICGTGVGINNAV 75 (171)
T ss_pred chHHHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHH
Confidence 367889999999999988752 11101122 23334444433334344 5899999998765
No 157
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=21.81 E-value=1e+02 Score=33.76 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=25.7
Q ss_pred CCCCCceeeEEEEEeCCceEEEEEEEeCCC
Q 011505 88 LPTGDEKGTYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 88 lP~G~E~G~~laiDlGGTnlRv~~V~l~g~ 117 (484)
+|-+.+.-+=+|+|+|-|.||.-+|+|..+
T Consensus 157 ~pg~~~~~YGvAvDlGTS~i~aqlVDL~sg 186 (614)
T COG3894 157 WPGLKNEAYGVAVDLGTSGIRAQLVDLKSG 186 (614)
T ss_pred ccCccceeeeeEEecccceeeeEEEeccCC
Confidence 576777778899999999999999999543
No 158
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=21.73 E-value=72 Score=29.20 Aligned_cols=59 Identities=14% Similarity=0.180 Sum_probs=34.6
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEech-------HHHHhccccc-CCCcEEEEEEccCcceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDT-------VGTLAGGRYT-NKDVVAAVILGTGSNAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDt-------vatlla~~y~-~~~~~iglIlGTG~Na~yie 249 (484)
.|..+++.+.+.|+.+|++|.=..-.++. .+-.++.+-. +....-=+|+|||.+++..-
T Consensus 10 ag~~lK~~I~~~Lk~~g~~v~D~G~~~~~~~~dyp~~a~~va~~v~~~~~d~GIliCGTGiG~~iaA 76 (151)
T COG0698 10 AGYELKEIIIDHLKSKGYEVIDFGTYTDEGSVDYPDYAKKVAEAVLNGEADLGILICGTGIGMSIAA 76 (151)
T ss_pred ccHHHHHHHHHHHHHCCCEEEeccccCCCCCcchHHHHHHHHHHHHcCCCCeeEEEecCChhHHHHh
Confidence 36778888999999888875211011122 2223333332 23344446999999998865
No 159
>PRK13411 molecular chaperone DnaK; Provisional
Probab=21.72 E-value=2.1e+02 Score=32.40 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.4
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCC
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~ 117 (484)
..+.++.+||||.++-+.++++.+.
T Consensus 184 ~~~~vlV~DlGgGT~dvsi~~~~~~ 208 (653)
T PRK13411 184 QEQLILVFDLGGGTFDVSILQLGDG 208 (653)
T ss_pred CCCEEEEEEcCCCeEEEEEEEEeCC
Confidence 3457999999999999999999664
No 160
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=21.71 E-value=1.9e+02 Score=23.09 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~~L~~g 39 (90)
T PF00216_consen 4 KELIKRIAEKTGLSKKDVEAVLDALFDVIKEALKEG 39 (90)
T ss_dssp HHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 466777777888999999999999999999999753
No 161
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=21.08 E-value=4e+02 Score=23.47 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=12.2
Q ss_pred EEEEeCCceEEEEEEEe
Q 011505 98 YALDLGGTNFRVLRVHL 114 (484)
Q Consensus 98 laiDlGGTnlRv~~V~l 114 (484)
||||+|-..+=+++.+.
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 68999988666665444
No 162
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.94 E-value=1.6e+02 Score=25.80 Aligned_cols=44 Identities=14% Similarity=0.323 Sum_probs=29.1
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAA 149 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (484)
|+|||+|-..+-+++++-.+. ... ...++.+. ....+|++|+..
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~~---~~~----~~~~~~~~--~~~~~l~~~l~~ 44 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNGE---KLR----RFKFENDP--AGLEKLLDWLAS 44 (144)
T ss_pred eEEEEcccCeEEEEEEcCCCc---EEE----EEEEeccc--cchhHHhhhhcc
Confidence 799999999999998877662 221 24455432 234567777654
No 163
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=20.87 E-value=4.4e+02 Score=24.26 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=19.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCC
Q 011505 96 TYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~ 117 (484)
.+||||-|-++.=.++++..++
T Consensus 3 ~iLGIDPgl~~tG~avi~~~~~ 24 (164)
T PRK00039 3 RILGIDPGLRRTGYGVIEVEGR 24 (164)
T ss_pred EEEEEccccCceeEEEEEecCC
Confidence 5899999999999999988765
No 164
>COG4071 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.48 E-value=1e+02 Score=29.81 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=33.1
Q ss_pred cHHHHHHHHHHh-cCCCceEEEEEechHHHHhccccc-CCCcEEEEEEccCcce
Q 011505 194 DVVEELSRAMAK-QGLDMSVSALVNDTVGTLAGGRYT-NKDVVAAVILGTGSNA 245 (484)
Q Consensus 194 dv~~~L~~al~r-~gl~v~v~alvNDtvatlla~~y~-~~~~~iglIlGTG~Na 245 (484)
-+..+|.+.++| .|.+|.++...-|++--.++-.|+ -+...=|+|-|||.-+
T Consensus 144 ~vA~el~~Ei~rr~GvDV~v~v~DTDaTY~iLg~yFT~lp~a~pgI~sgtGv~G 197 (278)
T COG4071 144 KVAEELYKEIKRRLGVDVVVMVADTDATYRILGFYFTALPYAIPGIISGTGVFG 197 (278)
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCchHHHHHHHHHhhccccCCCeecccchHH
Confidence 377888888875 588875444444444444655554 2455568889999754
Done!