Query 011505
Match_columns 484
No_of_seqs 199 out of 902
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9m_A Glucokinase; hexokinase 100.0 5E-116 2E-120 922.4 43.4 430 35-480 15-464 (470)
2 3hm8_A Hexokinase-3; glucose, 100.0 6E-113 2E-117 892.7 40.9 421 39-480 4-440 (445)
3 3o8m_A Hexokinase; rnaseh-like 100.0 3E-111 1E-115 892.3 45.7 434 32-480 18-473 (485)
4 1bdg_A Hexokinase; phosphotran 100.0 3E-102 1E-106 821.9 43.8 428 34-480 5-450 (451)
5 2yhx_A Hexokinase B; transfera 100.0 3.2E-98 1E-102 791.3 44.5 424 38-481 6-447 (457)
6 1cza_N Hexokinase type I; stru 100.0 1.5E-95 5E-100 829.6 42.8 428 38-481 467-912 (917)
7 1cza_N Hexokinase type I; stru 100.0 1.9E-83 6.6E-88 730.2 40.0 429 34-480 15-463 (917)
8 1z05_A Transcriptional regulat 100.0 6.3E-27 2.1E-31 246.0 30.6 334 44-475 59-414 (429)
9 2qm1_A Glucokinase; alpha-beta 100.0 3.9E-27 1.3E-31 237.7 27.0 300 94-475 5-320 (326)
10 3vgl_A Glucokinase; ROK family 100.0 3.5E-27 1.2E-31 238.7 26.5 294 95-475 2-311 (321)
11 1z6r_A MLC protein; transcript 99.9 4.4E-26 1.5E-30 237.7 28.2 337 43-474 35-391 (406)
12 2hoe_A N-acetylglucosamine kin 99.9 1.2E-25 4E-30 232.7 26.6 317 43-475 38-370 (380)
13 3vov_A Glucokinase, hexokinase 99.9 8.8E-26 3E-30 226.7 21.7 278 96-475 2-294 (302)
14 4db3_A Glcnac kinase, N-acetyl 99.9 2.4E-25 8.2E-30 226.0 24.6 275 96-474 25-324 (327)
15 3r8e_A Hypothetical sugar kina 99.9 2.7E-25 9.3E-30 224.8 21.8 287 92-475 16-318 (321)
16 2yhw_A Bifunctional UDP-N-acet 99.9 2.3E-24 8E-29 219.6 25.6 295 93-476 28-338 (343)
17 2ap1_A Putative regulator prot 99.9 6.2E-25 2.1E-29 222.3 19.0 276 95-474 24-324 (327)
18 4htl_A Beta-glucoside kinase; 99.9 2.7E-24 9.3E-29 215.3 22.7 271 96-476 5-291 (297)
19 3htv_A D-allose kinase, alloki 99.9 4.9E-24 1.7E-28 214.9 22.6 276 93-475 5-298 (310)
20 2aa4_A Mannac kinase, putative 99.9 9.3E-25 3.2E-29 217.0 16.4 270 96-474 2-286 (289)
21 3epq_A Putative fructokinase; 99.9 3.5E-23 1.2E-27 208.0 17.9 260 96-475 4-288 (302)
22 2gup_A ROK family protein; sug 99.9 1.4E-22 4.6E-27 201.8 21.2 267 96-476 5-287 (292)
23 3mcp_A Glucokinase; structural 99.9 1.2E-22 4.2E-27 209.1 21.2 258 93-460 7-298 (366)
24 1sz2_A Glucokinase, glucose ki 99.9 7.1E-22 2.4E-26 200.6 17.1 284 94-475 13-325 (332)
25 2q2r_A Glucokinase 1, putative 99.9 5E-22 1.7E-26 204.9 14.2 290 94-475 28-370 (373)
26 2ch5_A NAGK protein; transfera 99.8 2E-19 7E-24 182.8 22.2 299 96-476 7-324 (347)
27 2e2o_A Hexokinase; acetate and 99.8 2E-20 7E-25 186.6 9.1 278 96-476 3-287 (299)
28 1woq_A Inorganic polyphosphate 99.8 4.4E-19 1.5E-23 174.6 18.5 241 90-478 7-263 (267)
29 1saz_A Probable butyrate kinas 99.8 8E-19 2.7E-23 181.7 13.3 282 96-475 3-347 (381)
30 3lm2_A Putative kinase; struct 99.7 5.8E-17 2E-21 156.1 7.4 199 93-446 4-208 (226)
31 1zxo_A Conserved hypothetical 99.7 2.7E-16 9.1E-21 156.6 10.8 265 96-474 1-276 (291)
32 1zbs_A Hypothetical protein PG 99.6 1.1E-15 3.6E-20 152.3 14.1 272 96-476 1-280 (291)
33 1zc6_A Probable N-acetylglucos 99.6 7.3E-15 2.5E-19 147.0 18.4 274 96-475 12-292 (305)
34 3ifr_A Carbohydrate kinase, FG 98.4 4.3E-05 1.5E-09 81.5 24.7 84 92-182 4-94 (508)
35 3ll3_A Gluconate kinase; xylul 98.0 0.00073 2.5E-08 71.9 22.6 61 95-158 4-67 (504)
36 4ehu_A Activator of 2-hydroxyi 97.4 0.002 7E-08 62.5 13.8 109 96-249 2-111 (276)
37 1hux_A Activator of (R)-2-hydr 97.3 0.0017 5.8E-08 63.4 12.5 46 423-477 211-257 (270)
38 2p3r_A Glycerol kinase; glycer 96.8 0.0025 8.6E-08 67.8 9.1 82 93-181 1-89 (510)
39 4e1j_A Glycerol kinase; struct 96.8 0.0031 1E-07 67.4 8.9 80 95-181 26-112 (520)
40 3h3n_X Glycerol kinase; ATP-bi 96.7 0.0035 1.2E-07 66.6 9.1 81 94-181 4-91 (506)
41 2dpn_A Glycerol kinase; thermu 96.7 0.0035 1.2E-07 66.3 9.0 79 96-181 3-88 (495)
42 2w40_A Glycerol kinase, putati 96.6 0.0051 1.7E-07 65.3 9.4 79 96-181 5-92 (503)
43 3g25_A Glycerol kinase; IDP007 96.6 0.0049 1.7E-07 65.4 9.3 80 95-181 6-92 (501)
44 3ezw_A Glycerol kinase; glycer 96.6 0.0035 1.2E-07 67.0 8.1 77 92-175 1-80 (526)
45 2d4w_A Glycerol kinase; alpha 96.5 0.0055 1.9E-07 65.1 8.8 77 96-181 3-88 (504)
46 3l0q_A Xylulose kinase; xlylul 96.5 0.0052 1.8E-07 66.1 8.2 74 95-175 5-81 (554)
47 2zf5_O Glycerol kinase; hypert 96.3 0.009 3.1E-07 63.2 8.6 76 96-178 4-82 (497)
48 2itm_A Xylulose kinase, xylulo 96.3 0.0093 3.2E-07 62.9 8.7 78 96-182 1-85 (484)
49 3hz6_A Xylulokinase; xylulose, 96.2 0.0085 2.9E-07 63.7 8.4 74 95-176 5-81 (511)
50 3jvp_A Ribulokinase; PSI-II, N 96.1 0.0093 3.2E-07 64.3 8.1 75 95-176 5-94 (572)
51 3bex_A Type III pantothenate k 95.2 0.034 1.2E-06 53.6 7.3 121 96-250 4-140 (249)
52 2uyt_A Rhamnulokinase; rhamnos 95.2 0.041 1.4E-06 57.9 8.6 79 95-182 4-91 (489)
53 3h6e_A Carbohydrate kinase, FG 95.1 0.028 9.5E-07 59.4 6.7 58 95-155 6-65 (482)
54 3djc_A Type III pantothenate k 94.5 0.19 6.5E-06 48.8 10.3 123 96-250 3-143 (266)
55 3i8b_A Xylulose kinase; strain 93.2 0.16 5.5E-06 53.9 7.8 54 94-153 4-58 (515)
56 2ych_A Competence protein PILM 92.3 0.99 3.4E-05 45.2 11.9 58 191-250 148-210 (377)
57 4bc3_A Xylulose kinase; transf 88.6 0.9 3.1E-05 48.3 8.0 47 423-478 437-483 (538)
58 3h1q_A Ethanolamine utilizatio 87.3 6.3 0.00022 37.1 12.5 110 94-227 27-137 (272)
59 2h3g_X Biosynthetic protein; p 85.6 1.2 3.9E-05 43.3 6.2 44 97-149 2-45 (268)
60 4gni_A Putative heat shock pro 85.5 4.2 0.00014 41.1 10.7 83 380-480 313-404 (409)
61 3qfu_A 78 kDa glucose-regulate 84.3 3.7 0.00012 41.0 9.5 48 195-244 168-218 (394)
62 3i33_A Heat shock-related 70 k 83.7 5.9 0.0002 39.8 10.8 82 380-478 320-402 (404)
63 3ezw_A Glycerol kinase; glycer 80.0 6.1 0.00021 41.7 9.6 78 385-479 375-452 (526)
64 4ijn_A Acetate kinase, acetoki 75.9 2.9 9.9E-05 42.7 5.3 53 385-446 297-349 (398)
65 4a2a_A Cell division protein F 75.5 19 0.00063 36.9 11.5 56 193-250 167-225 (419)
66 3g25_A Glycerol kinase; IDP007 72.7 12 0.00042 39.0 9.5 49 422-479 406-454 (501)
67 2p3r_A Glycerol kinase; glycer 71.8 13 0.00046 38.9 9.5 76 386-478 375-450 (510)
68 2d4w_A Glycerol kinase; alpha 70.3 17 0.00058 38.0 9.9 48 422-478 405-452 (504)
69 3h3n_X Glycerol kinase; ATP-bi 69.4 15 0.0005 38.5 9.2 77 385-478 376-452 (506)
70 2ivn_A O-sialoglycoprotein end 67.8 94 0.0032 30.3 18.4 129 96-247 2-136 (330)
71 4b9q_A Chaperone protein DNAK; 67.7 20 0.00067 38.5 9.9 82 380-478 302-383 (605)
72 3jvp_A Ribulokinase; PSI-II, N 67.4 14 0.00048 39.3 8.6 49 422-478 441-489 (572)
73 3i8b_A Xylulose kinase; strain 66.6 22 0.00074 37.4 9.8 48 422-478 426-473 (515)
74 2zf5_O Glycerol kinase; hypert 66.5 17 0.00057 37.9 8.9 47 423-478 396-442 (497)
75 2v7y_A Chaperone protein DNAK; 66.4 28 0.00095 36.3 10.6 46 196-243 125-172 (509)
76 2dpn_A Glycerol kinase; thermu 66.3 16 0.00054 38.1 8.6 47 423-478 401-447 (495)
77 2w40_A Glycerol kinase, putati 64.2 22 0.00076 37.0 9.3 47 423-478 410-456 (503)
78 4e1j_A Glycerol kinase; struct 63.1 20 0.00069 37.6 8.8 47 423-478 428-474 (520)
79 3vth_A Hydrogenase maturation 62.9 29 0.00099 38.4 10.2 50 422-477 695-748 (761)
80 1yuw_A Heat shock cognate 71 k 62.6 29 0.001 36.6 10.0 51 196-248 155-210 (554)
81 4bc3_A Xylulose kinase; transf 60.7 21 0.00071 37.6 8.4 32 95-129 10-41 (538)
82 2itm_A Xylulose kinase, xylulo 59.1 21 0.00072 37.0 7.9 47 423-478 389-436 (484)
83 2i7n_A Pantothenate kinase 1; 59.1 26 0.00089 35.2 8.3 79 380-474 279-358 (360)
84 2kho_A Heat shock protein 70; 57.4 39 0.0013 36.1 9.9 52 196-249 151-206 (605)
85 3d2f_A Heat shock protein homo 52.8 13 0.00044 40.6 5.2 138 97-243 4-208 (675)
86 3mdq_A Exopolyphosphatase; str 52.3 43 0.0015 32.7 8.5 62 96-157 5-68 (315)
87 2uyt_A Rhamnulokinase; rhamnos 52.0 47 0.0016 34.3 9.2 76 385-478 366-441 (489)
88 3l0q_A Xylulose kinase; xlylul 51.4 43 0.0015 35.3 8.9 48 422-478 444-491 (554)
89 3hi0_A Putative exopolyphospha 50.8 31 0.0011 36.2 7.6 76 80-157 2-79 (508)
90 3nuw_A 2-OXO-3-deoxygalactonat 50.4 18 0.0006 35.5 5.2 52 95-154 6-57 (295)
91 3h6e_A Carbohydrate kinase, FG 48.4 16 0.00056 38.0 5.0 62 398-477 374-436 (482)
92 1nu0_A Hypothetical protein YQ 47.7 99 0.0034 26.4 9.1 22 95-116 3-24 (138)
93 1hjr_A Holliday junction resol 46.9 39 0.0013 29.8 6.5 23 96-118 2-24 (158)
94 3hz6_A Xylulokinase; xylulose, 45.6 39 0.0013 35.3 7.4 41 207-248 230-272 (511)
95 1t6c_A Exopolyphosphatase; alp 45.3 46 0.0016 32.5 7.4 62 96-157 13-76 (315)
96 3t69_A Putative 2-dehydro-3-de 44.6 15 0.00053 36.4 3.8 54 95-155 7-60 (330)
97 2ews_A Pantothenate kinase; PA 42.0 1.3E+02 0.0044 29.0 10.0 68 382-470 212-279 (287)
98 3eno_A Putative O-sialoglycopr 36.6 1.5E+02 0.0053 28.9 9.7 128 96-245 7-140 (334)
99 2fsj_A Hypothetical protein TA 36.4 48 0.0016 32.6 6.0 52 93-153 188-239 (346)
100 2ews_A Pantothenate kinase; PA 34.2 25 0.00085 34.2 3.4 20 93-112 18-37 (287)
101 3psi_A Transcription elongatio 32.8 3.1E+02 0.01 32.0 12.6 101 96-227 517-628 (1219)
102 3cer_A Possible exopolyphospha 32.6 76 0.0026 31.3 6.8 62 96-157 17-81 (343)
103 1u6z_A Exopolyphosphatase; alp 31.7 90 0.0031 32.6 7.5 62 96-157 12-75 (513)
104 3psf_A Transcription elongatio 31.4 2.7E+02 0.0091 31.9 11.6 101 96-227 520-631 (1030)
105 4ep4_A Crossover junction endo 31.1 2E+02 0.007 25.3 8.6 22 96-117 2-23 (166)
106 3ttc_A HYPF, transcriptional r 30.6 55 0.0019 35.5 5.6 47 422-476 601-651 (657)
107 3s5p_A Ribose 5-phosphate isom 29.9 24 0.00083 31.5 2.2 59 191-249 31-96 (166)
108 3aap_A Ectonucleoside triphosp 27.0 1.9E+02 0.0066 28.5 8.6 61 94-156 2-64 (353)
109 3tai_A DNA double-strand break 26.0 64 0.0022 33.1 4.8 49 49-101 23-71 (471)
110 3r9p_A ACKA; ssgcid, seattle s 25.0 1.1E+02 0.0039 30.9 6.4 45 389-446 296-340 (391)
111 3cet_A Conserved archaeal prot 23.8 50 0.0017 32.8 3.5 41 380-429 245-285 (334)
112 1mul_A NS2, HU-2, DNA binding 23.1 1.3E+02 0.0045 23.2 5.3 36 38-73 4-39 (90)
113 3ph3_A Ribose-5-phosphate isom 21.6 25 0.00086 31.5 0.7 59 191-249 30-95 (169)
114 3he8_A Ribose-5-phosphate isom 21.5 25 0.00087 30.8 0.7 58 192-249 11-75 (149)
115 3rhi_A DNA-binding protein HU; 21.2 1.3E+02 0.0044 23.6 4.9 35 39-73 8-42 (93)
116 1p71_A DNA-binding protein HU; 21.2 1.4E+02 0.0047 23.4 5.1 36 38-73 4-39 (94)
117 1b8z_A Protein (histonelike pr 20.9 1.4E+02 0.0049 23.0 5.1 36 38-73 4-39 (90)
118 2o97_B NS1, HU-1, DNA-binding 20.6 1.4E+02 0.0048 23.1 5.0 36 38-73 4-39 (90)
119 1dkg_D Molecular chaperone DNA 20.3 43 0.0015 33.0 2.3 52 196-249 151-206 (383)
No 1
>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*
Probab=100.00 E-value=5e-116 Score=922.38 Aligned_cols=430 Identities=35% Similarity=0.574 Sum_probs=394.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC--CCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEE
Q 011505 35 GKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEG--GSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRV 112 (484)
Q Consensus 35 ~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~--~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V 112 (484)
+.+.+.++++.+.|.++.++|++|+++|..||++||++++ +|+++||||||+++|+|+|+|.|||||||||||||++|
T Consensus 15 ~~~~~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~~~~s~~~MlPTyV~~lP~G~E~G~fLAlDlGGTNfRV~~V 94 (470)
T 3f9m_A 15 GMKKEKVEQILAEFQLQEEDLKKVMRRMQKEMDRGLRLETHEEASVKMLPTYVRSTPEGSEVGDFLSLDLGGTNFRVMLV 94 (470)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSTTTTTTCSSCCEEEEEESSCCCCCCEEEEEEEESSSEEEEEEE
T ss_pred hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCcccccCccccCCCCCcceEEEEEEecCceEEEEEE
Confidence 3456667788888899999999999999999999999764 48899999999999999999999999999999999999
Q ss_pred EeCCCc--ceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE
Q 011505 113 HLGGKG--VGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL 190 (484)
Q Consensus 113 ~l~g~~--~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l 190 (484)
+|.|++ .+.++..+++|+||+++|.+++++||||||+||.+|+++++.. ++.+||||||||||+|+++++|+|
T Consensus 95 ~L~g~~~~~~~~~~~~~~~~Ip~~l~~gt~~eLFd~IA~~i~~fl~~~~~~-----~~~lpLGfTFSFP~~Q~sl~~g~L 169 (470)
T 3f9m_A 95 KVGEGEEGQWSVKTKHQMYSIPEDAMTGTAEMLFDYISECISDFLDKHQMK-----HKKLPLGFTFSFPVRHEDIDKGIL 169 (470)
T ss_dssp EEEC----CEEEEEEEEEEECCHHHHSSBHHHHHHHHHHHHHHHHHHTTCS-----SSCCEEEEEECSCEEEEETTEEEE
T ss_pred EECCCCCCcceEEEEEEeecCChHhccCCHHHHHHHHHHHHHHHHhhcccc-----ccccceEEEEeccccccCCCceEE
Confidence 998764 2345556678999999999999999999999999999987643 467999999999999999999999
Q ss_pred ------------ECccHHHHHHHHHHhcC-CCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCc
Q 011505 191 ------------VGRDVVEELSRAMAKQG-LDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKW 257 (484)
Q Consensus 191 ------------~G~dv~~~L~~al~r~g-l~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~ 257 (484)
+|+||+++|++|++|+| +||+|+||+|||||||++++|.+++|.||+|+|||||+||+|+.++|+|+
T Consensus 170 i~WTKGF~~~~v~G~DVv~lL~~al~r~g~~~v~v~AlvNDTVgTL~s~aY~~~~~~iGlI~GTGtNa~Y~E~~~~I~k~ 249 (470)
T 3f9m_A 170 LNWTKGFKASGAEGNNVVGLLRDAIKRRGDFEMDVVAMVNDTVATMISCYYEDHQCEVGMIVGTGCNACYMEEMQNVELV 249 (470)
T ss_dssp CCCCTTCCCBTCBTSBHHHHHHHHHHHHCSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTS
T ss_pred EeccccccCCCcCCccHHHHHHHHHHhcCCCCCcEEEEEEcCHHHHHhcccCCCCceEEEEEecCCceEEeeeccccccc
Confidence 89999999999999998 79999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcEEEeCCCCCCCCCC---CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCC
Q 011505 258 HGVPSKSGEMVINMEWGDFRSSH---LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVP 334 (484)
Q Consensus 258 ~~~~~~~g~miIN~EwG~f~~~~---lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~ 334 (484)
++ ..++||||||||+||+++ +|+|+||+++|++|.|||+|+||||+||||||||+|++|+++++++.||++..|
T Consensus 250 ~~---~~~~miINtEwG~Fg~~~~l~~~~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~ 326 (470)
T 3f9m_A 250 EG---DEGRMCVNTEWGAFGDSGELDEFLLEYDRLVDESSANPGQQLYEKLIGGKYMGELVRLVLLRLVDENLLFHGEAS 326 (470)
T ss_dssp SC---CSSEEEEECCGGGTTTTSTTGGGCCHHHHHHHHHSSSTTSCHHHHTTCHHHHHHHHHHHHHHHHHTTCSGGGCCC
T ss_pred cC---CCCcEEEeechhhcCCCcccCCCCCcccHHHhhcCCCCCceeeccccchhhHHHHHHHHHHHHHHhCcCcCCCCc
Confidence 86 567899999999999764 579999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 011505 335 PKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAA 414 (484)
Q Consensus 335 ~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~ 414 (484)
++|.+||+|+|++||.|+.|++++ ..++.+++. ++++ ++.+|++.+++||++|.+|||+|+||+|+||+++++....
T Consensus 327 ~~L~~~~~l~T~~ls~ie~d~~~~-~~~~~il~~-l~~~-~~~~d~~~vr~i~~~V~~RaA~L~Aa~iaail~k~~~~~~ 403 (470)
T 3f9m_A 327 EQLRTRGAFETRFVSQVESDTGDR-KQIYNILST-LGLR-PSTTDCDIVRRACESVSTRAAHMCSAGLAGVINRMRESRS 403 (470)
T ss_dssp TTTTSTTCSCHHHHHHHHTCCSSC-HHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhcCCCCcCchHHhhhccCCCch-HHHHHHHHh-cCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999888 889999987 8985 5669999999999999999999999999999999975321
Q ss_pred CCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 415 KDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 415 ~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
....+++||+|||+|++||.|+++++++++++++ .++|+|++++||||+|||++||++++.
T Consensus 404 --~~~~~~~VgvDGsv~~~yp~f~~~~~~~l~~l~~---~~~v~l~~a~DGSg~GAAliAa~a~~~ 464 (470)
T 3f9m_A 404 --EDVMRITVGVDGSVYKLHPSFKERFHASVRRLTP---SCEITFIESEEGSGRGAALVSAVACKK 464 (470)
T ss_dssp --CSSEEEEEEEECHHHHHCTTHHHHHHHHHHHHCT---TEEEEEEECSSHHHHHHHHHHHHHTC-
T ss_pred --ccccceEEEEeccHHHhCchHHHHHHHHHHHHcC---CCeEEEEEcCCCcHHHHHHHHHHHHHH
Confidence 2335699999999999999999999999999984 368999999999999999999999875
No 2
>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-113 Score=892.67 Aligned_cols=421 Identities=35% Similarity=0.580 Sum_probs=386.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCc
Q 011505 39 GIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKG 118 (484)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~ 118 (484)
+.++++.++|.++.++|++|+++|..||++||++++ |+++||||||+++|+|+|+|.|||||||||||||++|+|.|.
T Consensus 4 ~~~~~~~~~f~l~~~~L~~i~~~f~~em~~GL~~~~-s~~~MlPtyv~~~P~G~E~G~~LAlDlGGTn~RV~~V~l~g~- 81 (445)
T 3hm8_A 4 RLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEA-SSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTG- 81 (445)
T ss_dssp HHHHHHHGGGSCCHHHHHHHHHHHHHHHHHHHHTSC-CSSCCEECCCCSSCCSCCCEEEEEEEESSSSEEEEEEEESSS-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCccCCCCCCCCCCCceeeEEEEEEecCCeEEEEEEEECCc-
Confidence 345566667779999999999999999999999765 889999999999999999999999999999999999999775
Q ss_pred ceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE--------
Q 011505 119 VGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL-------- 190 (484)
Q Consensus 119 ~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l-------- 190 (484)
+...+++|+||+++|.+++++||||||+||.+|+++++.. ++.+|+|||||||++|+++++|+|
T Consensus 82 ---~~~~~~~~~ip~~~~~g~~~~LFd~Ia~~i~~fl~~~~~~-----~~~lplGftFSFP~~Q~sl~~g~Li~wtKGF~ 153 (445)
T 3hm8_A 82 ---VQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLS-----GQSLPLGFTFSFPCRQLGLDQGILLNWTKGFK 153 (445)
T ss_dssp ---EEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCT-----TCCCCEEEEECSCEECSSTTCCEECCCCTTCC
T ss_pred ---eEEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHHhCcc-----cccCcceEEEeeeeEeccCCceEEEEeecccc
Confidence 2334457999999999999999999999999999987642 467999999999999999999999
Q ss_pred ----ECccHHHHHHHHHHhc-CCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCCCCCCCC
Q 011505 191 ----VGRDVVEELSRAMAKQ-GLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSG 265 (484)
Q Consensus 191 ----~G~dv~~~L~~al~r~-gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g 265 (484)
+|+||+++|+++++|+ ++|++|+||+|||||||++++|.++++.||+|+|||||+||+|+.++|+++++ +.+
T Consensus 154 ~~~~~G~dv~~lL~~al~r~~~~~v~vvAivNDTvgTLla~~y~~~~~~iglIlGTGtNa~y~e~~~~i~k~~~---~~~ 230 (445)
T 3hm8_A 154 ASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPG---DSG 230 (445)
T ss_dssp CBTCTTSBHHHHHHHHHHHTTCSCCCSEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEEGGGCTTSCC---CSS
T ss_pred CCCCCCCcHHHHHHHHHHhcCCCCcceEEEecCcHHHHHhhccCCCCceEEEEEeCCceEEEEEecccccccCC---CCC
Confidence 7999999999999998 58999999999999999999999999999999999999999999999999875 467
Q ss_pred cEEEeCCCCCCCCCCC---CCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCc
Q 011505 266 EMVINMEWGDFRSSHL---SLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFA 342 (484)
Q Consensus 266 ~miIN~EwG~f~~~~l---p~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~ 342 (484)
+|+||||||+||++++ |+|+||+++|++|.|||+|+||||+||||||||+|++|+++++++.||++..|+.|.+||+
T Consensus 231 ~miINtEwG~Fg~~~~l~~~~T~~D~~lD~~S~~PG~q~fEKmiSG~YLGEivRliL~~l~~~~~lf~~~~~~~L~~~~~ 310 (445)
T 3hm8_A 231 RMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDI 310 (445)
T ss_dssp EEEEECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTGGGTSHHHHHHHHHHHHHHHHHHTSSGGGCCCGGGGSTTC
T ss_pred cEEEEcchhhcCCCCCCcCCCCccchHHhcCCCCCCceEeeeecchhhHHHHHHHHHHHHHHcCCCCCCCCcHHHcCCCC
Confidence 9999999999998764 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcce
Q 011505 343 LRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKT 422 (484)
Q Consensus 343 l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~ 422 (484)
|+|++||.|++|++ ++..+..+|+. |++ .++.+|++.+++||++|.+|||+|+|++|+||++++++... ....++
T Consensus 311 l~T~~ls~ie~D~~-~~~~~~~~l~~-l~~-~~t~~d~~~vr~i~~~V~~RaA~L~Aa~iaai~~k~~~~~~--~~~~~~ 385 (445)
T 3hm8_A 311 FKTKFLSEIESDSL-ALRQVRAILED-LGL-PLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRG--LEELAV 385 (445)
T ss_dssp SCHHHHHHHTCTTC-CHHHHHHHHHT-TTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSSEEE
T ss_pred CCcHHHHHHhcCCc-hHHHHHHHHHH-hCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccccCc
Confidence 99999999999865 57788999977 999 68999999999999999999999999999999999965211 123468
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
+||+|||||++||.|+++++++++++++. ++|+|.+++||||+|||++||++++.
T Consensus 386 ~VgvDGsvy~~~P~f~~~l~~~l~~l~~~---~~v~~~~s~DGSg~GAAl~AA~a~~~ 440 (445)
T 3hm8_A 386 SVGVDGTLYKLHPRFSSLVAATVRELAPR---CVVTFLQSEDGSGKGAALVTAVACRL 440 (445)
T ss_dssp EEEEECHHHHHCTTHHHHHHHHHHHHCTT---EEEEEEECSSCHHHHHHHHHHHHHHH
T ss_pred EEEEeceehccChhHHHHHHHHHHHhCCC---CcEEEEECCCCchHHHHHHHHHHHHH
Confidence 99999999999999999999999999764 58999999999999999999999875
No 3
>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*
Probab=100.00 E-value=2.8e-111 Score=892.27 Aligned_cols=434 Identities=35% Similarity=0.556 Sum_probs=402.3
Q ss_pred CchhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEE
Q 011505 32 GKCGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLR 111 (484)
Q Consensus 32 ~~~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~ 111 (484)
.-+.++.+.+++++++|.+|.++|++|+++|..||++||++++ ++++||||||+++|+|+|+|.|||||||||||||++
T Consensus 18 ~~~~~~~~~~~~~~~~f~~~~~~L~~i~~~f~~em~~GL~~~~-~~~~MlPt~V~~lP~G~E~G~~LalDlGGTn~Rv~~ 96 (485)
T 3o8m_A 18 DVPANLMEQIHGLETLFTVSSEKMRSIVKHFISELDKGLSKKG-GNIPMIPGWVVEYPTGKETGDFLALDLGGTNLRVVL 96 (485)
T ss_dssp TSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHSSSC-CSSCCEECCCCSCCCSCCEEEEEEEEESSSEEEEEE
T ss_pred cCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccCC-CCCcccCCCCCCCCCCCcceEEEEEEecCCeEEEEE
Confidence 3566889999999999999999999999999999999999764 789999999999999999999999999999999999
Q ss_pred EEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE-
Q 011505 112 VHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL- 190 (484)
Q Consensus 112 V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l- 190 (484)
|++.|++. .+...++|+||++++.+++++||||||+||.+|+++++.+. ..+.+++|||||||++|+++++|+|
T Consensus 97 V~l~g~~~--~~~~~~~~~Ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~---~~~~l~lGftfSfP~~q~~i~~g~li 171 (485)
T 3o8m_A 97 VKLGGNHD--FDTTQNKYRLPDHLRTGTSEQLWSFIAKCLKEFVDEWYPDG---VSEPLPLGFTFSYPASQKKINSGVLQ 171 (485)
T ss_dssp EEEESSSC--EEEEEEEEECCTTGGGSBHHHHHHHHHHHHHHHHHHHCTTC---CSSCEEEEEEECSCEECSBTTCCEEC
T ss_pred EEECCCCc--eEEEEEEEecCchhccCCHHHHHHHHHHHHHHHHHHhcccc---cccccceEEEEeeeEEEcccCCEEEe
Confidence 99987642 22234569999999998899999999999999999876432 1457999999999999999999999
Q ss_pred -----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCC
Q 011505 191 -----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHG 259 (484)
Q Consensus 191 -----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~ 259 (484)
+|+||+++|+++++|+|+||+|+||+|||||||++++|.++++.||+|+|||+|+||+|+.++|+|+++
T Consensus 172 ~wtKGF~i~~~~G~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~~~~~iglIlGTG~N~~y~e~~~~i~k~~~ 251 (485)
T 3o8m_A 172 RWTKGFDIEGVEGHDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTDPQTKMGIIIGTGVNGAYYDVVSGIEKLEG 251 (485)
T ss_dssp CCCTTCCCBTCTTSBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCGGGTT
T ss_pred eccccccCCCcCCccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCCCCcEEEEEEecCcceEEEeeccccccccc
Confidence 599999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred ----CCCCCCcEEEeCCCCCCCCC--CCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCC
Q 011505 260 ----VPSKSGEMVINMEWGDFRSS--HLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTV 333 (484)
Q Consensus 260 ----~~~~~g~miIN~EwG~f~~~--~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~ 333 (484)
..+..++|+||||||+|++. .+|+|+||+++|++|.|||+|+||||+||||||||+|++|+++++++.||++..
T Consensus 252 ~~~~~~~~~~~miINtEwG~F~~~~~~lp~T~~D~~lD~~S~nPG~Q~fEKmiSG~YLGEivRlil~~l~~~~~lF~~~~ 331 (485)
T 3o8m_A 252 LLPEDIGPDSPMAINCEYGSFDNEHLVLPRTKYDVIIDEESPRPGQQAFEKMTSGYYLGEIMRLVLLDLYDSGFIFKDQD 331 (485)
T ss_dssp TCCTTSCTTCEEEEECCGGGTTTTCSSSCCCHHHHHHHHHSSSTTSCHHHHHHSTTTHHHHHHHHHHHHHHTTSSSTTSC
T ss_pred cccccCCCCCcEEEEcccccCCCCcccCCCCchhhHHhhcCCCCCceeeccccccchHHHHHHHHHHHHHHcCcccCCCC
Confidence 33456789999999999875 489999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011505 334 PPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDA 413 (484)
Q Consensus 334 ~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~ 413 (484)
|++|.+||+|+|++||.|++|+++++..+..+|.+.|+++ ++.+|++.+++||++|.+|||+|+|++|+||++++++
T Consensus 332 ~~~L~~~~~l~T~~ls~i~~d~~~~l~~~~~~l~~~l~~~-~t~~d~~~vr~i~~~V~~RAA~L~Aa~iaail~~~~~-- 408 (485)
T 3o8m_A 332 ISKLKEAYVMDTSYPSKIEDDPFENLEDTDDLFKTNLNIE-TTVVERKLIRKLAELVGTRAARLTVCGVSAICDKRGY-- 408 (485)
T ss_dssp CGGGGSTTCSCTHHHHHHHHCCCTTCHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred cHHhcCCCCcCcHHHHHHHcCCcchHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 9999999999999999999999999999999999999996 8999999999999999999999999999999999998
Q ss_pred cCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccC----CccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 414 AKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEEL----FKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 414 ~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~----~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
+.++||+|||||++||.|+++++++++++++... .++|+|.+++|||++|||++||++++.
T Consensus 409 ------~~~~VgvdGSv~~~~P~f~~~~~~~l~~ll~~~~~~~~~~~v~l~~a~DGSg~GAAliAa~a~~~ 473 (485)
T 3o8m_A 409 ------KTAHIAADGSVFNRYPGYKEKAAQALKDIYNWDVEKMEDHPIQLVAAEDGSGVGAAIIACLTQKR 473 (485)
T ss_dssp ------SSEEEEEESHHHHHSTTHHHHHHHHHHHHHTCCCCSGGGCSEEEEECCCTTTHHHHHHHHHHHHH
T ss_pred ------CceEEEEecChhccCccHHHHHHHHHHHHhccccccCCCceEEEEEcCCChHHHHHHHHHHHHHH
Confidence 3489999999999999999999999999987432 468999999999999999999998865
No 4
>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3
Probab=100.00 E-value=3.5e-102 Score=821.92 Aligned_cols=428 Identities=34% Similarity=0.570 Sum_probs=395.4
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcC--CCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEE
Q 011505 34 CGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLAS--EGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLR 111 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~--~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~ 111 (484)
++.+.+.+++|++.|.+|.++|++|+++|..||++||++ +++|+++||||||+++|+|+|+|+|||||||||||||++
T Consensus 5 ~~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~ 84 (451)
T 1bdg_A 5 DQQLFEKVVEILKPFDLSVVDYEEICDRMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNGTETGNFLALDLGGTNYRVLS 84 (451)
T ss_dssp HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSCCCEECCCCSCCCSCCCEEEEEEEESSSSEEEEE
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccCCCCCcccccccccCCCCCCCccceEEEEEeCCCeEEEEE
Confidence 456778899999999999999999999999999999984 335899999999999999999999999999999999999
Q ss_pred EEeCC-CcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE
Q 011505 112 VHLGG-KGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL 190 (484)
Q Consensus 112 V~l~g-~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l 190 (484)
|+++| ++. .+...++|+||++++.+++++||||||+||.+|+++++.. .+.++||||||||++|+++++|+|
T Consensus 85 V~l~G~~~~--~~i~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~~~lG~tfsfPv~q~~~~~G~l 157 (451)
T 1bdg_A 85 VTLEGKGKS--PRIQERTYCIPAEKMSGSGTELFKYIAETLADFLENNGMK-----DKKFDLGFTFSFPCVQKGLTHATL 157 (451)
T ss_dssp EEECC-CCC--CEEEEEEECCCTTTTTSBHHHHHHHHHHHHHHHHHHTTCC-----SSCEEEEEEECSCEEEETTTEEEE
T ss_pred EecCCCCcc--eEEEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHhcCCC-----ccccceEEEEeeEeccccCCCeEE
Confidence 99988 432 2222356999999888999999999999999999987642 346999999999999999999999
Q ss_pred ------------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcC
Q 011505 191 ------------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWH 258 (484)
Q Consensus 191 ------------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~ 258 (484)
+|+||+++|+++++|+|+||+|++|+||||||+++++|.++++.||+|+|||+|+||+|+.+.|+|++
T Consensus 158 ~~wtKgf~~~~~~g~dv~~~L~~al~r~~l~v~v~al~NDtv~tlla~~y~~~~~~iglIlGTG~na~yve~~~~i~~~~ 237 (451)
T 1bdg_A 158 VRWTKGFSADGVEGHNVAELLQTELDKRELNVKCVAVVNDTVGTLASCALEDPKCAVGLIVGTGTNVAYIEDSSKVELMD 237 (451)
T ss_dssp CCCCTTCCCBTCTTSBHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCGGGC
T ss_pred eccccccCCCCCCCCcHHHHHHHHHHHcCCCcceEEEEEchHHHHHHhcccCCCcEEEEEEeCCcceEEEEcCccccCcC
Confidence 59999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCcEEEeCCCCCCCCCC---CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCC
Q 011505 259 GVPSKSGEMVINMEWGDFRSSH---LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPP 335 (484)
Q Consensus 259 ~~~~~~g~miIN~EwG~f~~~~---lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~ 335 (484)
+. +.|||+||+|||.|++++ +|+|+||.++|..|+|||+||||||+||+||||++|+++.++.+++.+|++..|+
T Consensus 238 g~--~~g~m~In~EwG~f~~~~~~~~p~t~~D~~lD~~s~~pg~q~~Ek~~SG~yLgel~R~~l~~~~~~~~lf~~~~~~ 315 (451)
T 1bdg_A 238 GV--KEPEVVINTEWGAFGEKGELDCWRTQFDKSMDIDSLHPGKQLYEKMVSGMYLGELVRHIIVYLVEQKILFRGDLPE 315 (451)
T ss_dssp SC--SSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHHTSSSTTSCTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCS
T ss_pred CC--ccCcEEEecCcccCCCcccccCCCCcchhhhhhcCCCCCcccchhhhhhhHHHHHHHHHHHHhhcccccccccchH
Confidence 74 678999999999999876 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 011505 336 KLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAK 415 (484)
Q Consensus 336 ~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~ 415 (484)
.|.+++.|+|++||.|++|+++++..++.+++..++++.++.+|++.++++|+.|++|+|+++|++|+++++++++
T Consensus 316 ~l~~~~~l~t~~ls~i~~d~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~va~~V~~RaA~lla~~ia~i~~~~~~---- 391 (451)
T 1bdg_A 316 RLKVRNSLLTRYLTDVERDPAHLLYNTHYMLTDDLHVPVVEPIDNRIVRYACEMVVKRAAYLAGAGIACILRRINR---- 391 (451)
T ss_dssp GGGSTTCSCTTHHHHHTTCCTTCCHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred hhcCCCccchHHHhhhhccCccchHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----
Confidence 9999999999999999999999999999999987888766899999999999999999999999999999999998
Q ss_pred CCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 416 DGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 416 ~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
.+++|++|||+|++||.|++++++++++++.+ ..+|++.+++|||++|||++|+++++.
T Consensus 392 ----~~~~V~i~Ggv~~~~~~~~~~l~~~l~~~~~~--~~~i~~~l~~dgs~iGAAllA~~~~~~ 450 (451)
T 1bdg_A 392 ----SEVTVGVDGSLYKFHPKFCERMTDMVDKLKPK--NTRFCLRLSEDGSGKGAAAIAASCTRQ 450 (451)
T ss_dssp ----SEEEEEEESHHHHHCTTHHHHHHHHHHHHSCT--TCEEEEEECTTHHHHHHHHHHTTC---
T ss_pred ----CceEEEEeCchhcCchhHHHHHHHHHHHHhCC--CCcEEEEECCCccHHHHHHHHHHHhhc
Confidence 34799999999999999999999999999876 468999999999999999999988753
No 5
>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A
Probab=100.00 E-value=3.2e-98 Score=791.35 Aligned_cols=424 Identities=20% Similarity=0.262 Sum_probs=387.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~ 117 (484)
.+.+++|++.|.+|.++|++|+++|..||+ ||++++ |+++||||||+++|+|+|+|+||||||||||||+++|+++|+
T Consensus 6 ~~~~~~~~~~f~~~~~~L~~i~~~~~~em~-gL~~~~-~~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~lV~~~G~ 83 (457)
T 2yhx_A 6 XSLVEVHXXVFIVPPXILQAVVSILTTRXD-DXDSSA-ASIPMVPGWVLKQVSGAQAGSFLAIVMGGGDLEVILISLAGR 83 (457)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHSSS-CSSCCEECCCCCCCCSCCCEEEEEEEECSSEEEEEEEEEETT
T ss_pred HHHHHHHHhhhcCCHHHHHHHHHHHHHHhc-CCCCCC-CCCccCccccCCCCCCCccceEEEEEeCCCeEEEEEEEeCCC
Confidence 466788888899999999999999999999 998754 789999999999999999999999999999999999999886
Q ss_pred cceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE----ECc
Q 011505 118 GVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL----VGR 193 (484)
Q Consensus 118 ~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l----~G~ 193 (484)
.. .+...+++++|++.+.+++++|||||+++|.+|+++++.+ ..+.+++|||||||++|+++++|+| .|.
T Consensus 84 ~~--~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~~~~~~~~----~~~~~~lGi~fs~P~~q~~~~~g~l~~wtKgf 157 (457)
T 2yhx_A 84 QE--SSIXASRSLAAAMSTTAIPSDLWGNXAXSNAAFSSXEFSS----XAGSVPLGFTFXEAGAKEXVIKGQITXQAXAF 157 (457)
T ss_dssp EE--EEEEEEEECCTTTTSCSCTHHHHHHHHHHHHHHHHHHTSS----CSSCEEEEEECCSCCCCSBTTCCBCSSCCTTC
T ss_pred ee--EEEeeEEEEcCCccCCCCHHHHHHHHHHHHHHHHhhcccc----cccccceeeEEEEEEEEeecCceEEEeeccCC
Confidence 32 2223456999999888899999999999999999876432 1346799999999999999999988 365
Q ss_pred ------cHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCCCC-C-CCC
Q 011505 194 ------DVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVP-S-KSG 265 (484)
Q Consensus 194 ------dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~-~-~~g 265 (484)
||+++|+++++|+|+|++|++|+||||+|+++++|.++++.||+|+|||+|+||+++.++|+|+++.. . ..+
T Consensus 158 ~i~~~~~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~~~~~iglilGTGvgg~~i~~~~~i~kl~~~~~~~~~g 237 (457)
T 2yhx_A 158 SLAXLXKLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTDAXIKMGIIFGSGVNAAYWCDSTXIGDAADGGXXGGAG 237 (457)
T ss_dssp CCSSCSSBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEECGGGSSCTTSCSSSCSSC
T ss_pred CcchhHHHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcCCccEEEEEECcEEEEEEEECCCcccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986532 2 468
Q ss_pred cEEEeCCCCCCCCCC--CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCcc
Q 011505 266 EMVINMEWGDFRSSH--LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFAL 343 (484)
Q Consensus 266 ~miIN~EwG~f~~~~--lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l 343 (484)
+|+||+|||.|++++ +|+|+||++||..|.||| ||||||+||+||||++|+++.++.+++.+|++ .|++|.+||+|
T Consensus 238 ~~~in~EwG~f~~~~~~lp~t~~D~~lD~~s~~pG-q~fEkm~SG~yLGel~R~il~~~~~~~~lf~~-~~~~l~~~~~~ 315 (457)
T 2yhx_A 238 XMXICCDQSSFRKAFPSLPQIXYLXTLNXXSPXAX-KTFXKNSXAKNXGQSLRDVLMXFKXXGQXHXX-XAXSFXAANVE 315 (457)
T ss_dssp CEEEECCCTTTTTTCSSSCCCHHHHHHHHHSSCSC-CHHHHHHCGGGHHHHHHHHHHHHHHTTSSSSS-CCCSCCSTTCS
T ss_pred ceEEEEEcccCCCCCCcCCccccccccccccCchH-HHHHHHhhhcCcHHHHHHHHHHHhcccccccc-cchhcccccCc
Confidence 999999999998653 899999999999999999 99999999999999999999999999999998 99999999999
Q ss_pred ChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceE
Q 011505 344 RTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTV 423 (484)
Q Consensus 344 ~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~ 423 (484)
+|++||.++.|+++++..++.+|.+.++++ ++.+|++.++++|+.|++|||+|+|++|++|++++++ .+.+
T Consensus 316 ~t~~ls~i~~d~~~~l~~~~~il~~~~~~~-~t~~D~~~v~~ia~~V~~RaA~l~A~~iaai~~~~~~--------~~~~ 386 (457)
T 2yhx_A 316 NTSYPAKIQKLPHFDLRXXXDLFXGDQGIA-XKTXMKXVVRRXLFLIAAYAFRLVVCXIXAICQKKGY--------SSGH 386 (457)
T ss_dssp CTHHHHHHHHCCSSSCHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTC--------SSEE
T ss_pred ChHHHHHHhcCCchhhhHHHHHHHHHhCCC-ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------CcEE
Confidence 999999999999899988999997779986 5999999999999999999999999999999999997 3489
Q ss_pred EEEeceeeccchhHHHHHHHHHHHHhcccC----CccEEEEEcCChhHHHHHHHHHHhcccc
Q 011505 424 IAMDGGLYEHYAEYSKCLENTLEELLGEEL----FKNIVIEHSNDGSGIGAALLAASHSKYL 481 (484)
Q Consensus 424 I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~----~~~v~i~~~~Dgs~iGAAl~Aa~~~~~~ 481 (484)
|++|||+ ++||.|+++++++++++++++. ..+|+|++++|||++|||++||+++++.
T Consensus 387 V~vdGsv-~~~p~f~~~l~~~l~~l~~~~~~~~~~~~v~~~~~~dgsg~GAAl~aa~~~~~~ 447 (457)
T 2yhx_A 387 IAAXGSX-RSYSGFSXNSATXNXNIYGWPQSAXXSKPIXITPAIDGXGAASXVIXSIASAXX 447 (457)
T ss_dssp EEEESTT-TTSTTHHHHHHHHHHHHHCCCCSSGGGSSEEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred EEEECCc-ccCchHHHHHHHHHHHhhCcccccccCcceEEEECCCchhhhHHHHHHHHhhhh
Confidence 9999999 9999999999999999997643 4689999999999999999999999873
No 6
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=1.5e-95 Score=829.64 Aligned_cols=428 Identities=35% Similarity=0.564 Sum_probs=387.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC--CCCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE--GGSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLG 115 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~--~~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~ 115 (484)
.+.++++.++|.+|.++|++|+++|++||++||+++ .+|+++||||||+++|+|+|+|+|||||||||||||++|++.
T Consensus 467 ~~~i~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~~~~~mlpt~v~~~P~G~E~G~~lalDlGGTn~Rv~~V~l~ 546 (917)
T 1cza_N 467 HRQIEETLAHFHLTKDMLLEVKKRMRAEMELGLRKQTHNNAVVKMLPSFVRRTPDGTENGDFLALDLGGTNFRVLLVKIR 546 (917)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHSHHHHTTCSSCCEECSCCSCCCSCCCEEEEEEEESSSSEEEEEEEEE
T ss_pred chhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHhcccCCCCCCCceECCCCCCCCCCCcceEEEEEEECCCcEEEEEEEeC
Confidence 345678888889999999999999999999999854 358899999999999999999999999999999999999997
Q ss_pred CCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE-----
Q 011505 116 GKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL----- 190 (484)
Q Consensus 116 g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l----- 190 (484)
+.+.++++...++|+||++++.+++++||||||+||.+|+++++.. .+.++||||||||++|+++++|.|
T Consensus 547 ~g~~~~~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~~l~~~~~~-----~~~l~lG~tfsfPv~q~~i~~~~L~~WtK 621 (917)
T 1cza_N 547 SGKKRTVEMHNKIYAIPIEIMQGTGEELFDHIVSCISDFLDYMGIK-----GPRMPLGFTFSFPCQQTSLDAGILITWTK 621 (917)
T ss_dssp CSTTCEEEEEEEEECCCHHHHTSBHHHHHHHHHHHHHHHHHHHTCC-----SSCCEEEEEECSCEEEEETTEEEECCCCT
T ss_pred CCcceeEEeeeeEEecCcccccCCHHHHHHHHHHHHHHHHHHcCCC-----ccceeEEEEeeccccccccCccEECceec
Confidence 4332355555567999999888899999999999999999986542 346899999999999999999999
Q ss_pred -------ECccHHHHHHHHHHhc-CCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcCCCCC
Q 011505 191 -------VGRDVVEELSRAMAKQ-GLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWHGVPS 262 (484)
Q Consensus 191 -------~G~dv~~~L~~al~r~-gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~ 262 (484)
+|+||+++|+++++|+ ++||++++|+|||||||++++|.++++.||+|+|||+|+||+|+.++|+++.+
T Consensus 622 gf~~~~~~g~dv~~~L~~al~r~~~~~v~~val~NDtv~tlla~~y~~~~~~iglIlGTG~na~y~e~~~~i~~~~g--- 698 (917)
T 1cza_N 622 GFKATDCVGHDVVTLLRDAIKRREEFDLDVVAVVNDTVGTMMTCAYEEPTCEVGLIVGTGSNACYMEEMKNVEMVEG--- 698 (917)
T ss_dssp TCCCBSCTTSBHHHHHHHHHHHHTSCCCEEEEEECHHHHHHHHHHTTCTTEEEEEEESSSEEEEEEEETTTCTTSSC---
T ss_pred ccccCCcCCCcHHHHHHHHHHhcCCCCceEEEEEEccHHHHHHhccCCCCcEEEEEEeCCeeEEEEEcCccccCcCC---
Confidence 7999999999999987 79999999999999999999999999999999999999999999999999874
Q ss_pred CCCcEEEeCCCCCCCCCC---CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCC
Q 011505 263 KSGEMVINMEWGDFRSSH---LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEV 339 (484)
Q Consensus 263 ~~g~miIN~EwG~f~~~~---lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~ 339 (484)
+.+||+||+|||.||+++ +|+|+||++||+.|.|||+||||||+||+||||++|+++.++.+++.+|.+..|+.|.+
T Consensus 699 ~~g~m~In~EwG~fg~~~~l~~~~T~~D~~~d~~s~~pG~q~~Ek~~SG~yLgel~R~il~~~~~~~~lf~~~~~~~l~~ 778 (917)
T 1cza_N 699 DQGQMCINMEWGAFGDNGCLDDIRTHYDRLVDEYSLNAGKQRYEKMISGMYLGEIVRNILIDFTKKGFLFRGQISETLKT 778 (917)
T ss_dssp CSSEEEEECCGGGTTTTSTTTTTCCHHHHHHHHTSTTTTSCTTGGGTSTTTHHHHHHHHHHHHHHTTSSGGGCCCTTTTS
T ss_pred CcCcEEEecccccCCCcccccCCCCchhhhhhhcCCCCCCCchHHhhhHhHHHHHHHHHHHHhcccccccccccchhhcc
Confidence 678999999999999865 58999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCC
Q 011505 340 PFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDK 419 (484)
Q Consensus 340 ~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~ 419 (484)
++.|+|++||.++.|++ ++..++.+++. +++ .++.+|++.++++|+.|++|||+|+|++|++|+++++++.. .+.
T Consensus 779 ~~~~~t~~ls~ie~d~~-~~~~~~~i~~~-~~~-~~~~~D~~~~~~ia~~v~~RaA~l~a~~iaai~~~~~~~~~--~~~ 853 (917)
T 1cza_N 779 RGIFETKFLSQIESDRL-ALLQVRAILQQ-LGL-NSTCDDSILVKTVCGVVSRRAAQLCGAGMAAVVDKIRENRG--LDR 853 (917)
T ss_dssp TTCSCHHHHHHHTCSSC-CHHHHHHHHHH-HTC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CSS
T ss_pred CCccchHHhhhhhcCcc-hhhHHHHHHHH-hCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--cCc
Confidence 99999999999999987 46688888876 888 47899999999999999999999999999999999976321 222
Q ss_pred cceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhcccc
Q 011505 420 QKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKYL 481 (484)
Q Consensus 420 ~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~~ 481 (484)
.+.+|++|||||++||.|+++++++++++.+. .+|+|++++|||++|||++||++.+..
T Consensus 854 ~~~~V~vdGsv~~~~p~f~~~~~~~l~~l~~~---~~v~~~~~~dgsg~GAAl~aa~~~~~~ 912 (917)
T 1cza_N 854 LNVTVGVDGTLYKLHPHFSRIMHQTVKELSPK---CNVSFLLSEDGSGKGAALITAVGVRLR 912 (917)
T ss_dssp EEEEEEEECHHHHHCTTHHHHHHHHHHHHSTT---EEEEEEECSSCSHHHHHHHHHHHHHHH
T ss_pred cceEEEECCHHHHcCcHHHHHHHHHHHHhCCC---CceEEEEecCChHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999742 579999999999999999999998764
No 7
>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*
Probab=100.00 E-value=1.9e-83 Score=730.21 Aligned_cols=429 Identities=34% Similarity=0.581 Sum_probs=383.5
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC--CCCcceeecccccCCCCCceeeEEEEEeCCceEEEEE
Q 011505 34 CGKANGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASEG--GSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLR 111 (484)
Q Consensus 34 ~~~~~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~--~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~ 111 (484)
+..+.+.+++|.+.|.+|.++|++|+++|..||++||++++ .|+++||||||+++|+|+|+|+||||||||||||+++
T Consensus 15 ~~~~~~~~~~~~~~f~~~~~~l~~i~~~~~~em~~gL~~~~~~~s~~~mlpt~v~~~P~G~E~G~~laiDlGGTnirv~l 94 (917)
T 1cza_N 15 KDDQVKKIDKYLYAMRLSDETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSEKGDFIALDLGGSSFRILR 94 (917)
T ss_dssp -CHHHHHHHHHTGGGSCCHHHHHHHHHHHHHHHHHHHCTTTGGGCSSCCEECCCCSCCCSCCCEEEEEEEESSSSEEEEE
T ss_pred CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhccCCCCCCcccccccccCCCCCCCCcceEEEEEeCCCeEEEEE
Confidence 33455668899999999999999999999999999998754 4789999999999999999999999999999999999
Q ss_pred EEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE-
Q 011505 112 VHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL- 190 (484)
Q Consensus 112 V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l- 190 (484)
|+++|++...++...+++++|++++.+++++|||||+++|.+|+++++.. .+.+++|||||||++|+++++|++
T Consensus 95 v~~~G~~~~~i~~~~~~~~ip~~~~~~~~~~lf~~Ia~~i~~~l~~~~~~-----~~~~~lGi~fs~P~~q~~~~~G~l~ 169 (917)
T 1cza_N 95 VQVNHEKNQNVHMESEVYDTPENIVHGSGSQLFDHVAECLGDFMEKRKIK-----DKKLPVGFTFSFPCQQSKIDEAILI 169 (917)
T ss_dssp EEEEEETTEEEEEEEEEECCCHHHHSSBHHHHHHHHHHHHHHHHHHHTCT-----TSCCCEEEEECSCEECSSTTCCEEC
T ss_pred EEecCCCcceEEEEEEEEECCcccccCCHHHHHHHHHHHHHHHHHhcCCC-----CCcccEEEEEccccccCcCCceEEE
Confidence 99987533333233456899988777789999999999999999876532 235799999999999999999998
Q ss_pred -----------ECccHHHHHHHHHHhcC-CCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEcccccccCcC
Q 011505 191 -----------VGRDVVEELSRAMAKQG-LDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIPKWH 258 (484)
Q Consensus 191 -----------~G~dv~~~L~~al~r~g-l~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~k~~ 258 (484)
+|+||+++|+++|+|+| +|+++++|+||||||+++++|.++++.||+|+|||+|+||++++++|+++.
T Consensus 170 ~wtkgfni~~~~g~~v~~~L~~~l~r~g~~pv~~val~NDa~~tll~e~~~~~~~~iglilGTGvngg~i~~g~~i~~~~ 249 (917)
T 1cza_N 170 TWTKRFKASGVEGADVVKLLNKAIKKRGDYDANIVAVVNDTVGTMMTCGYDDQHCEVGLIIGTGTNACYMEELRHIDLVE 249 (917)
T ss_dssp CCCTTCCCBTCTTSBHHHHHHHHHHHHCSCCCCEEEEECHHHHHHHHHHHHCTTEEEEEEESSSEEEEEEEEGGGCTTSS
T ss_pred ecccCCCCCcccCCchHHHHHHHHhhcCCCCceEEEEEEhhHHHHHHhhccCCCcEEEEEEECCcceEEEecCccccccc
Confidence 48899999999999987 899999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCcEEEeCCCCCCCCCC---CCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCC
Q 011505 259 GVPSKSGEMVINMEWGDFRSSH---LSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPP 335 (484)
Q Consensus 259 ~~~~~~g~miIN~EwG~f~~~~---lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~ 335 (484)
+ ..|||+||+|||.|++++ +|+|+||..+|..|+|||+||||||+||+||||++|+++.++.+++.+|.+..|+
T Consensus 250 G---~~g~~~in~E~G~f~~~~~l~~~~t~~D~~~dc~~g~pg~g~~Ek~~SG~yLgel~r~~l~~~~~~~~~~~~~~~~ 326 (917)
T 1cza_N 250 G---DEGRMCINTEWGAFGDDGSLEDIRTEFDRAIDAYSLNPGKQLFEKMVSGMYLGELVRLILVKMAKEGLLFEGRITP 326 (917)
T ss_dssp C---CSSEEEEECCGGGTTTTTTTTTTCCHHHHHHHHTSSSTTSSTTHHHHSHHHHHHHHHHHHHHHHHTTSSGGGCCCT
T ss_pred C---CCCceEEeccccccCCccccccCCCccccccccCCcCCCccHhHHHhhhhhHHHHHHHHHHHhhccccccccccch
Confidence 6 367999999999998765 4699999999999999999999999999999999999999998888889888888
Q ss_pred CCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Q 011505 336 KLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKM--GRDA 413 (484)
Q Consensus 336 ~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~--~~~~ 413 (484)
.|.+++.|++++|+.++ |+++++..+..+++. ++++ ++..|++.++++|+.|++|+|+++|++|++|++++ +|.
T Consensus 327 ~l~~~~~l~t~~vs~~~-~~~~~~~~~~~i~~~-~~~~-~~~~D~~~~~~~a~~v~~raa~llA~gia~ii~~l~~dp~- 402 (917)
T 1cza_N 327 ELLTRGKFNTSDVSAIE-KNKEGLHNAKEILTR-LGVE-PSDDDCVSVQHVCTIVSFRSANLVAATLGAILNRLRDNKG- 402 (917)
T ss_dssp TTTSTTSSCHHHHHHHT-CTTTHHHHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred hhccccccChHHHHHHh-cccccHHHHHHHHHH-hCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-
Confidence 99999999999999998 557788889999987 7884 78999999999999999999999999999999999 552
Q ss_pred cCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhccc
Q 011505 414 AKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 414 ~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
.+.++.+|++|||||++||.|+++++++++++++. ..++|++++|||++|||++||++++.
T Consensus 403 ---~~~~~~~IvigGgV~~~~~~~~~~l~~~l~~~~~~---~~~~i~~a~dgs~~GAA~laa~~~~l 463 (917)
T 1cza_N 403 ---TPRLRTTVGVDGSLYKTHPQYSRRFHKTLRRLVPD---SDVRFLLSESGSGKGAAMVTAVAYRL 463 (917)
T ss_dssp ---CSSEEEEEEEECHHHHHCSSHHHHHHHHHHHHCTT---EEEEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ---ccCcceEEEECCchhhccHHHHHHHHHHHHHhcCC---CceEEEEeccchHHHHHHHHHhHhhh
Confidence 12245899999999999999999999999998732 57999999999999999999998764
No 8
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.96 E-value=6.3e-27 Score=246.01 Aligned_cols=334 Identities=15% Similarity=0.151 Sum_probs=244.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC----C---CcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCC
Q 011505 44 FEEKCRTPAAKLKQVADAMTVEMHAGLASEGG----S---KLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 44 ~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~----s---~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g 116 (484)
+.+.+.++..++..+.++|.+ +||-.+.+ | .-+.+.++. | +.+++|+||+|||++|++++++.|
T Consensus 59 la~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~s~~GR~~~~l~~~---~---~~~~~lGIDiGgt~i~~~l~d~~G 129 (429)
T 1z05_A 59 LSKESELAPASITKITRELID---AHLIHETTVQEAISRGRPAVGLQTN---N---LGWQFLSMRLGRGYLTIALHELGG 129 (429)
T ss_dssp HHHHHTCCHHHHHHHHHHHHH---TTSEEEECHHHHHHHTSCCEEEEEC---C---TTEEEEEEEEETTEEEEEEEETTS
T ss_pred HHHHHCCCHHHHHHHHHHHHH---CCCEEeccccCCCCCCCCCeEEEEC---C---CCCEEEEEEECCCEEEEEEECCCC
Confidence 344556777777888777766 67633211 0 112233332 2 457899999999999999999988
Q ss_pred CcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE------
Q 011505 117 KGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL------ 190 (484)
Q Consensus 117 ~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l------ 190 (484)
+ ++.+. .++.|. .+.+++++.|++.|.+++++.+.. ..+...+|+++++|++ ..+|++
T Consensus 130 ~---il~~~--~~~~~~----~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd---~~~g~v~~~~~l 193 (429)
T 1z05_A 130 E---VLIDT--KIDIHE----IDQDDVLARLLFEIEEFFQTYAAQ----LDRVTSIAITLPGLVN---SEQGIVLQMPHY 193 (429)
T ss_dssp C---EEEEE--EEECCC----CBHHHHHHHHHHHHHHHHHHTTTT----CCEEEEEEEEESSEEE---TTTTEEEECSSS
T ss_pred C---EEEEE--EEcCCC----CCHHHHHHHHHHHHHHHHHhcCCC----cCceEEEEEeccCcEe---CCCCeEeecCCC
Confidence 5 55432 244432 247889999999999999876532 1346789999999998 445554
Q ss_pred --ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCcceEEEcccccccCcCCCCCCC
Q 011505 191 --VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKS 264 (484)
Q Consensus 191 --~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~ 264 (484)
.+.++.+.|++.+ ++|| .|.||++++++++.|. +.++.+.+++|||++++++.+++.+.+.++.++|.
T Consensus 194 ~w~~~~l~~~L~~~~---~~pV---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~AGEi 267 (429)
T 1z05_A 194 NVKNLALGPEIYKAT---GLPV---FVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGEL 267 (429)
T ss_dssp BCSSBCHHHHHHHHH---CSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEECCTTTTCTTBC
T ss_pred CCCCCCHHHHHHHHh---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEEEECCcEEEEEEECCEEeeCCCCccccc
Confidence 5689999999999 8884 6999999999999865 46889999999999999999999999999999999
Q ss_pred CcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccC
Q 011505 265 GEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALR 344 (484)
Q Consensus 265 g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~ 344 (484)
|||.++.++..|. |++. +|+|.++|+..|-+.++..+. .+ .++.+..
T Consensus 268 GH~~v~~~g~~c~----------------cG~~--gclE~~~S~~al~~~~~~~~~----~~------~~~~l~~----- 314 (429)
T 1z05_A 268 GHIQIDPQGKRCH----------------CGNY--GCLETVASSQAIRDQVTARIQ----AG------EPSCLAT----- 314 (429)
T ss_dssp TTSBCCTTCCBCT----------------TSCB--SBTHHHHSHHHHHHHHHHHHH----TT------CCCTTTT-----
T ss_pred CceEEcCCCCCCC----------------CCCC--cchHHHhCHHHHHHHHHHHhh----cc------ccccccc-----
Confidence 9999987655553 7776 699999999998665544221 11 0111100
Q ss_pred hhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEE
Q 011505 345 TPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVI 424 (484)
Q Consensus 345 t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I 424 (484)
.+.. ....+++. ++..+..|..+++++++++|.+|+++++.++| ..|
T Consensus 315 ---------~~~~---~~~~i~~~-----------a~~gD~~a~~il~~~~~~L~~~i~~l~~~ldP----------~~I 361 (429)
T 1z05_A 315 ---------VEEI---SIEDICAA-----------AADGDPLAVDVIQQLGRYLGAAIAIVINLFNP----------EKI 361 (429)
T ss_dssp ---------CSSC---CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------SEE
T ss_pred ---------ccCC---CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CEE
Confidence 0000 12333333 44556889999999999999999999999998 579
Q ss_pred EEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHHH
Q 011505 425 AMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 425 ~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
.++|++....|.|.+.+++.+++...+.....+.|.. .+| +.+|||.++.
T Consensus 362 vlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~I~~s~l~~~-~~~GAa~l~~ 414 (429)
T 1z05_A 362 LIGGVINQAKSILYPSIEQCIREQSLPVYHQDLKLVESRFYKQ-ATMPGAALIK 414 (429)
T ss_dssp EEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCSSC-TTHHHHHHHH
T ss_pred EEeCccccchHHHHHHHHHHHHHhcccccCCCcEEEEecCCCc-cHHHHHHHHH
Confidence 9999999999999999999998774332122455554 678 9999998864
No 9
>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}
Probab=99.96 E-value=3.9e-27 Score=237.74 Aligned_cols=300 Identities=17% Similarity=0.178 Sum_probs=224.1
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELG 173 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lG 173 (484)
.+++|+||+|||++|++++++.|+ ++.+. +++.|.. .+.+++++.+++.|.+++++.+.. ..+...+|
T Consensus 5 ~~~~lgiDiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~~ig 72 (326)
T 2qm1_A 5 DKKIIGIDLGGTTIKFAILTTDGV---VQQKW--SIETNIL---EDGKHIVPSIIESIRHRIDLYNMK----KEDFVGIG 72 (326)
T ss_dssp GCEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCCT---TTTTTHHHHHHHHHHHHHHHTTCC----GGGEEEEE
T ss_pred ccEEEEEEECCCEEEEEEECCCCC---EEEEE--EEcCCCC---CCHHHHHHHHHHHHHHHHHHcCCC----ccceeEEE
Confidence 358999999999999999999875 55432 2444432 357889999999999999876532 13467899
Q ss_pred eeeeeeeeeeecCceEE--------ECc-cHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEc
Q 011505 174 FTFSFPVMQTSINTGTL--------VGR-DVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILG 240 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l--------~G~-dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlG 240 (484)
++++.|++ ..+|++ .+. ++.+.|++.+ ++| +.|.||++++++++.|. +.++.+.+++|
T Consensus 73 i~~pG~vd---~~~g~v~~~~~l~w~~~~~l~~~l~~~~---~~p---v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~G 143 (326)
T 2qm1_A 73 MGTPGSVD---IEKGTVVGAYNLNWTTVQPVKEQIESAL---GIP---FALDNDANVAALGERWKGAGENNPDVIFITLG 143 (326)
T ss_dssp EEESSEEE---TTTTEEECBGGGTBCSCBCHHHHHHHHH---CSC---EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEES
T ss_pred Eeccccee---CCCCEEEecCCCCccCCchHHHHHHHHh---CCC---EEEecHHHHHHHHHHHhCCCCCCCcEEEEEEC
Confidence 99999998 455554 567 9999999998 888 46999999999999864 46789999999
Q ss_pred cCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHH
Q 011505 241 TGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLL 320 (484)
Q Consensus 241 TG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~ 320 (484)
||++++++.+++.+.+.++.+++.|||.++.++..|. |++. +|+|.++|+.+|-+.++..+.
T Consensus 144 tGiG~giv~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~----------------cG~~--gcle~~~s~~~l~~~~~~~~~ 205 (326)
T 2qm1_A 144 TGVGGGIVAAGKLLHGVAGCAGEVGHVTVDPNGFDCT----------------CGKR--GCLETVSSATGVVRVARHLSE 205 (326)
T ss_dssp SSEEEEEEETTEECCCSSSCTTCGGGSBSCTTSCBCT----------------TSSB--CBTHHHHSHHHHHHHHHHHTT
T ss_pred CceEEEEEECCEEeecCCCcccccCcEEECCCCCcCC----------------CCCc--cchHhhhCHHHHHHHHHHHhh
Confidence 9999999999999999999899999999987643443 6666 699999999999665554211
Q ss_pred HHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 321 RMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAA 400 (484)
Q Consensus 321 ~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa 400 (484)
.. ..+. .+..+..+. ..+ ....+++. ++..+..|..+++++++++|.
T Consensus 206 ----~~-----~~~~-----------~~~~~~~~~-~~~-~~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~ 252 (326)
T 2qm1_A 206 ----EF-----AGDS-----------ELKQAIDDG-QDV-SSKDVFEF-----------AEKGDHFALMVVDRVCFYLGL 252 (326)
T ss_dssp ----TC-----CSCC-----------HHHHHHHHT-CCC-CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHH
T ss_pred ----cc-----cccc-----------hhhhccccc-cCC-CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHH
Confidence 00 0000 010110000 000 12233332 445568999999999999999
Q ss_pred HHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHHH
Q 011505 401 GILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 401 ~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
+|+++++.++| ..|.++|++.+..|.|.+.+++.+++...+.....+.|.. .+|++.+|||.++.
T Consensus 253 ~i~~l~~~l~p----------~~IvlgGg~~~~~~~~~~~l~~~l~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~l~~ 320 (326)
T 2qm1_A 253 ATGNLGNTLNP----------DSVVIGGGVSAAGEFLRSRVEKYFQEFTFPQVRNSTKIKLAELGNEAGVIGAASLAL 320 (326)
T ss_dssp HHHHHHHHHCC----------SEEEEEESGGGGTHHHHHHHHHHHHHTSCHHHHTTSEEEECSSGGGHHHHHHHHHGG
T ss_pred HHHHHHHhcCC----------CEEEEcChhhhchHHHHHHHHHHHHHhhhhccCCCcEEEEcCcCchHHHHHHHHHHH
Confidence 99999999998 5799999999999999999999998875432222455554 77889999998864
No 10
>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*
Probab=99.96 E-value=3.5e-27 Score=238.73 Aligned_cols=294 Identities=17% Similarity=0.152 Sum_probs=223.7
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
+++|+||+|||++|++++++.|+ ++.+. .++.| .+.+++++.|++.+.+++++. +...+|+
T Consensus 2 ~~~lgiDiGgt~i~~~l~d~~G~---i~~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~~---------~i~gigi 62 (321)
T 3vgl_A 2 GLTIGVDIGGTKIAAGVVDEEGR---ILSTF--KVATP-----PTAEGIVDAICAAVAGASEGH---------DVEAVGI 62 (321)
T ss_dssp CEEEEEEECSSEEEEEEECTTCC---BCCCE--EEECC-----SSHHHHHHHHHHHHHHHHTTC---------CEEEEEE
T ss_pred cEEEEEEECCCEEEEEEECCCCC---EEEEE--EeeCC-----CCHHHHHHHHHHHHHHHHhhc---------CceEEEE
Confidence 47899999999999999999885 55332 23332 357889999999999987542 3578999
Q ss_pred eeeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccC
Q 011505 175 TFSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTG 242 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG 242 (484)
+++.|++ .++|++ .+.++.+.|++.+ ++| +.+.||+++..+++.+. +.++.+.+++|||
T Consensus 63 ~~pG~vd---~~~g~v~~~~~l~w~~~~l~~~l~~~~---~~p---v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG 133 (321)
T 3vgl_A 63 GAAGYVD---DKRATVLFAPNIDWRHEPLKDKVEQRV---GLP---VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG 133 (321)
T ss_dssp EESSEEC---TTSSCEEECSSSCCEEECHHHHHHHHH---CSC---EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred eccccEe---CCCCEEEeCCCCCCcCCCHHHHHhhhh---CCC---EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc
Confidence 9999998 555554 6788999999999 888 46999999999999874 4688999999999
Q ss_pred cceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHH
Q 011505 243 SNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRM 322 (484)
Q Consensus 243 ~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~ 322 (484)
++++++.+++.+.+.++.++|.|||.++.+.-.| .|++. +|+|.++|+..|-+..+......
T Consensus 134 iG~gii~~G~l~~G~~g~aGEiGh~~v~~~g~~c----------------~cG~~--gclE~~~S~~al~~~~~~~~~~~ 195 (321)
T 3vgl_A 134 LGGGIIIGNKLRRGRFGVAAEFGHIRVVPDGLLC----------------GCGSQ--GCWEQYASGRALVRYAKQRANAT 195 (321)
T ss_dssp EEEEEEETTEECCCTTSCCCCGGGSBSSTTCSBC----------------TTSCB--SBGGGTSSHHHHHHHHHHHHHHC
T ss_pred eEEEEEECCEEecCCCCCCccccceEecCCCCCC----------------CCCCc--CcHHHhcCHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999998763344 37777 59999999999977666544321
Q ss_pred HhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 323 AQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGI 402 (484)
Q Consensus 323 ~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~i 402 (484)
... +..+.......... .....+++. ++..+..|..+++++++++|.+|
T Consensus 196 ~~~-------------------~~~~~~~~~~~~~~-~~~~~i~~~-----------a~~gD~~a~~~~~~~~~~La~~i 244 (321)
T 3vgl_A 196 PEN-------------------AAVLLGLGDGSVDG-IEGKHISEA-----------ARQGDPVAVDSFRELARWAGAGL 244 (321)
T ss_dssp GGG-------------------CHHHHHTTTSSSTT-CCHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred Ccc-------------------hhhhhhcccCcccc-CCHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 000 00000000000000 012333333 45566899999999999999999
Q ss_pred HHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhc-ccCCccEEEEE---cCChhHHHHHHHHH
Q 011505 403 LGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLG-EELFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 403 aaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~-~~~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
+++++.++| ..|.++|++.+..+.|.+.+++.+++... +.....+.|+. .+|++.+|||.++.
T Consensus 245 ~~l~~~l~p----------~~IvlgGgi~~~~~~l~~~l~~~l~~~~~~~~~~~~~~i~~s~l~~~a~l~GAa~l~~ 311 (321)
T 3vgl_A 245 ADLASLFDP----------SAFIVGGGVSDEGELVLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAADLAR 311 (321)
T ss_dssp HHHHHHHCC----------SEEEEESGGGGGTHHHHHHHHHHHHHHCTTGGGSCCCEEEECTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhCC----------CEEEEeChhhcchHHHHHHHHHHHHHhcccccccCCCEEEECCCCCcHHHHHHHHHHH
Confidence 999999998 58999999999999999999999998764 33334566665 78999999998764
No 11
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=99.95 E-value=4.4e-26 Score=237.66 Aligned_cols=337 Identities=14% Similarity=0.105 Sum_probs=243.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCC----CCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCc
Q 011505 43 EFEEKCRTPAAKLKQVADAMTVEMHAGLASEGG----SKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKG 118 (484)
Q Consensus 43 ~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~~----s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~ 118 (484)
++.+.+.++..++..+.++|.+ +||-.+.+ ++----|+.+.--| +.+++|+||+|||++|++++++.|+
T Consensus 35 ~la~~~~ls~~tv~~~v~~L~~---~g~i~~~~~~~~~~~GR~~~~l~~~~---~~~~~lgiDiG~t~i~~~l~d~~G~- 107 (406)
T 1z6r_A 35 DLSRLAQLAPASITKIVHEMLE---AHLVQELEIKEAGNRGRPAVGLVVET---EAWHYLSLRISRGEIFLALRDLSSK- 107 (406)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHH---HTSEEEC-------------CEEECC---TTCEEEEEEEETTEEEEEEEETTCC-
T ss_pred HHHHHHCCCHHHHHHHHHHHHH---CCcEEeecccCCCCCCCCCeEEEEcC---CccEEEEEEEcCCEEEEEEEcCCCC-
Confidence 4555667888888888888866 67743211 11111222222112 4578999999999999999999885
Q ss_pred ceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE--------
Q 011505 119 VGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL-------- 190 (484)
Q Consensus 119 ~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l-------- 190 (484)
++.+. .++.| ..+.+++++.+++.|.+++++.+.. ..+...+|+++++|++ .++|++
T Consensus 108 --il~~~--~~~~~----~~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd---~~~g~v~~~~~l~~ 172 (406)
T 1z6r_A 108 --LVVEE--SQELA----LKDDLPLLDRIISHIDQFFIRHQKK----LERLTSIAITLPGIID---TENGIVHRMPFYED 172 (406)
T ss_dssp --EEEEE--EEECC----SSCSSCHHHHHHHHHHHHHHHTGGG----CCCEEEEEEEESSEEE---TTTTEEEECTTCTT
T ss_pred --EEEEE--EecCC----CCCHHHHHHHHHHHHHHHHHhcCCC----cCceeEEEEEeecCEe---CCCCEEecCCCCCC
Confidence 55432 23433 2357889999999999999876532 1346789999999998 445544
Q ss_pred -ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCcceEEEcccccccCcCCCCCCCC
Q 011505 191 -VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSG 265 (484)
Q Consensus 191 -~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g 265 (484)
.+.++.+.|++.+ ++|| .|.||++++++++.|. +.++.+.+++|||++++++.+++.+.+.++.++|.|
T Consensus 173 w~~~~l~~~l~~~~---~~pv---~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~AGEiG 246 (406)
T 1z6r_A 173 VKEMPLGEALEQHT---GVPV---YIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIG 246 (406)
T ss_dssp CSSBCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSSEEEEEEETTEETTTTSSCCBCGG
T ss_pred ccCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhcCCCCCCcEEEEEECCcEEEEEEECCEEeecCCCcCccCC
Confidence 4678999999999 8884 6999999999999864 467899999999999999999999999999899999
Q ss_pred cEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccCh
Q 011505 266 EMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRT 345 (484)
Q Consensus 266 ~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t 345 (484)
||.++.+...|. |++. +|+|.++|+..|-+.++..+.. .+ +..+
T Consensus 247 h~~v~~~g~~c~----------------cG~~--gclE~~~S~~al~~~~~~~~~~------~~----~~~~-------- 290 (406)
T 1z6r_A 247 HTQVDPYGKRCY----------------CGNH--GCLETIASVDSILELAQLRLNQ------SM----SSML-------- 290 (406)
T ss_dssp GSBSCTTSCBCT----------------TSCB--SBTHHHHSHHHHHHHHHHHHTT------CT----TCGG--------
T ss_pred ceEecCCCCCCC----------------CCCc--cchHHHcCHHHHHHHHHHhhhc------cc----cccc--------
Confidence 999987644553 7776 5999999999986555432100 00 0000
Q ss_pred hhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEE
Q 011505 346 PDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIA 425 (484)
Q Consensus 346 ~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~ 425 (484)
..+ .. ....+++. ++..+..|..+++++++++|.+|+++++.++| ..|.
T Consensus 291 ------~~~-~~---~~~~v~~~-----------a~~gD~~a~~~l~~~~~~L~~~i~~l~~~ldP----------~~Iv 339 (406)
T 1z6r_A 291 ------HGQ-PL---TVDSLCQA-----------ALRGDLLAKDIITGVGAHVGRILAIMVNLFNP----------QKIL 339 (406)
T ss_dssp ------GSS-CC---CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------SEEE
T ss_pred ------Ccc-cC---CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC----------CEEE
Confidence 000 00 12333333 44556889999999999999999999999998 5799
Q ss_pred EeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHH
Q 011505 426 MDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLA 474 (484)
Q Consensus 426 vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~A 474 (484)
++|++....+.|.+.+++.+++...+.....+.+.. .+|++.+|||++.
T Consensus 340 lgG~i~~~~~~l~~~i~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~~~ 391 (406)
T 1z6r_A 340 IGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVK 391 (406)
T ss_dssp EESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSCCCCTTTTHHHHHH
T ss_pred EeCccchhhHHHHHHHHHHHHHhcccccCCCcEEEEeCCCChHHHHHHHHHH
Confidence 999999999999999999998774322122455554 7889999997654
No 12
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=99.94 E-value=1.2e-25 Score=232.73 Aligned_cols=317 Identities=13% Similarity=0.144 Sum_probs=235.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCC---CCCcceeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcc
Q 011505 43 EFEEKCRTPAAKLKQVADAMTVEMHAGLASEG---GSKLKMIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGV 119 (484)
Q Consensus 43 ~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~~---~s~l~Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~ 119 (484)
++.+...++..++..+.+++.+ +||-.+. .|+-=--|+.+.- -.+.+++++||+|||++|++++++.|+
T Consensus 38 ~la~~~gls~~tv~~~v~~L~~---~gli~~~~~~~~~~GR~~~~l~~---~~~~~~~lGIDiGgt~i~~~l~d~~G~-- 109 (380)
T 2hoe_A 38 ELAEELGLTKTTVGEIAKIFLE---KGIVVEEKDSPKGVGRPTKSLKI---SPNCAYVLGIEVTRDEIAACLIDASMN-- 109 (380)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHH---HTSEEEEECCC----CCCEEEEE---CGGGCEEEEEEECSSEEEEEEEETTCC--
T ss_pred HHHHHHCcCHHHHHHHHHHHHH---CCCEEeecCCCCCCCCCceEEEE---ccCCCeEEEEEECCCEEEEEEECCCCC--
Confidence 4455556888888888888766 6773321 1111011111110 124568999999999999999999885
Q ss_pred eeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeeeeeeeeeeecCceEE--------E
Q 011505 120 GLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTFSFPVMQTSINTGTL--------V 191 (484)
Q Consensus 120 ~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftFSfPv~q~~~~~G~l--------~ 191 (484)
++.+. .++.|.. .+.+++++.+++.|.+++++.+.. ..+...+|++++.|++ ..+|.+ .
T Consensus 110 -vl~~~--~~~~~~~---~~~~~~~~~l~~~i~~~~~~~~~~----~~~i~gigi~~pG~vd---~~~g~v~~~~~l~w~ 176 (380)
T 2hoe_A 110 -ILAHE--AHPLPSQ---SDREETLNVMYRIIDRAKDMMEKL----GSKLSALTVAAPGPID---TERGIIIDPRNFPLS 176 (380)
T ss_dssp -EEEEE--EEECCSS---CCHHHHHHHHHHHHHHHHHHHHHT----TCCCCEEEEEESSCEE---TTTTEECCCSSCTTB
T ss_pred -EEEEE--EEccCCC---CCHHHHHHHHHHHHHHHHHhcCCC----cCcEEEEEEEeeccEE---CCCCEEeccCCCCCc
Confidence 55432 2444432 257889999999999999876432 1346789999999998 445554 6
Q ss_pred CccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCC--CcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEE
Q 011505 192 GRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNK--DVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVI 269 (484)
Q Consensus 192 G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~--~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miI 269 (484)
+.++.+.|++.+ ++| +.|.||++++++++.|.+. ++.+.+++|||++++++.+++.+.+.++.++|.|||.+
T Consensus 177 ~~~l~~~l~~~~---~~p---V~v~NDanaaalaE~~~g~~~~~~v~l~~GtGiG~giv~~G~l~~G~~g~aGEiGh~~v 250 (380)
T 2hoe_A 177 QIPLANLLKEKY---GIE---VWVENDADMGAVGEKWYTKRDDSFAWILTGKGIGAGIIIDGELYRGENGYAGEIGYTRV 250 (380)
T ss_dssp TSCHHHHHHHHH---CSE---EEEEEHHHHHHHHHHHHTTCCSCEEEEEESSSCEEEEEETTEECCCSSSCCCCGGGCEE
T ss_pred CCChHHHHHHHh---CCC---EEEechHHHHHHHHHHhCCCCCcEEEEEeCCceEEEEEECCEEeccCCCccccccceEe
Confidence 789999999999 888 4699999999999987644 88999999999999999999999999999999999999
Q ss_pred eCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhh
Q 011505 270 NMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMS 349 (484)
Q Consensus 270 N~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls 349 (484)
+.+ -.| .|++. +|+|.++|+..|-+ . .+ .+
T Consensus 251 ~~~-~~c----------------~cG~~--gclE~~~s~~~l~~-----------~-------~~------------~v- 280 (380)
T 2hoe_A 251 FNG-NEY----------------VFLED--VCNENVVLKHVLSM-----------G-------FS------------SL- 280 (380)
T ss_dssp ECS-SSE----------------EEHHH--HHCHHHHHHHHHHH-----------C-------CC-------------T-
T ss_pred cCC-CCC----------------CCCCc--cHHHHHcCHHHHHH-----------H-------HH------------HH-
Confidence 865 222 25554 69999999987743 0 00 00
Q ss_pred hcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEece
Q 011505 350 AMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGG 429 (484)
Q Consensus 350 ~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGs 429 (484)
++ .++..+..|..+++++++++|.+|+++++.++| ..|.++|+
T Consensus 281 ----------------~~-----------~a~~gD~~a~~~l~~~~~~La~~i~~l~~~ldP----------~~IvlgG~ 323 (380)
T 2hoe_A 281 ----------------AE-----------ARDSGDVRVKEYFDDIARYFSIGLLNLIHLFGI----------SKIVIGGF 323 (380)
T ss_dssp ----------------TH-----------HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CEEEEEEG
T ss_pred ----------------HH-----------HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC----------CEEEEcCc
Confidence 01 133344778899999999999999999999998 57899999
Q ss_pred eeccchhHHHHHHHHHHHHhcccCCccEEEE---EcCChhHHHHHHHHH
Q 011505 430 LYEHYAEYSKCLENTLEELLGEELFKNIVIE---HSNDGSGIGAALLAA 475 (484)
Q Consensus 430 v~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~---~~~Dgs~iGAAl~Aa 475 (484)
+....|.|.+.+++.+++...+. ..+.+. +.+|++.+|||.++.
T Consensus 324 ~~~~~~~l~~~l~~~l~~~~~~~--~~~~i~~s~~~~~a~~~GAa~l~~ 370 (380)
T 2hoe_A 324 FKELGENFLKKIKIEVETHLLYK--HSVDMSFSKVQEPVIAFGAAVHAL 370 (380)
T ss_dssp GGGGHHHHHHHHHHHHHHHCSSS--CCCEEEECCCCSCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhcCCC--CCcEEEEcCCCCcHHHHHHHHHHH
Confidence 99888999999999998875432 244554 377889999998864
No 13
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}
Probab=99.94 E-value=8.8e-26 Score=226.74 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=215.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|||++|++++++++ ++.. .+++.|.. ..+++++.|++.+.+++++.. .+...+|++
T Consensus 2 ~~lgiDiGgt~i~~~l~d~~~----~l~~--~~~~~~~~----~~~~~~~~i~~~i~~~~~~~~-------~~i~gigi~ 64 (302)
T 3vov_A 2 KVVGLDLGGTKIAAGVFDGKR----LLSK--VVVPTPKE----GGERVAEALAEAAERAEREAG-------VRGEAIGLG 64 (302)
T ss_dssp CEEEEEECSSEEEEEEECSSS----BSCC--EEEECCSS----CHHHHHHHHHHHHHHHHHHHT-------CCCSSEEEE
T ss_pred EEEEEEEcCCEEEEEEEeCCC----cEEE--EEEcCCCC----ChHHHHHHHHHHHHHHHhhcc-------CCceEEEEE
Confidence 589999999999999999863 3322 22444432 237899999999999887542 246789999
Q ss_pred eeeeeeeeecCceEE---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccC
Q 011505 176 FSFPVMQTSINTGTL---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTG 242 (484)
Q Consensus 176 FSfPv~q~~~~~G~l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG 242 (484)
++.|++ .++|++ .+.++.+.|++.+ ++|| .+.||++++.+++.|. +.++.+.+++|||
T Consensus 65 ~pG~vd---~~~g~v~~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG 135 (302)
T 3vov_A 65 TPGPLD---FRRGVIRFAPNIPGVQDFPIRRILEEAT---GRPV---FLENDANAAALAEHHLGAAQGEESSLYLTVSTG 135 (302)
T ss_dssp ESSCEE---TTTTEEC---CCTTCTTCCHHHHHHHHH---SSCE---EEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS
T ss_pred ecccEe---CCCCEEEcCCCCCCcCCCChHHHHHHhh---CCCE---EEEechHHHHHHHHHhCCCCCCCCEEEEEECCc
Confidence 999998 455555 5678999999999 8884 6999999999999874 4678999999999
Q ss_pred cceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHH
Q 011505 243 SNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRM 322 (484)
Q Consensus 243 ~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~ 322 (484)
++++++.+++.+.+.++.++|.|||.++.+.-.| .|++. +|+|.++|+..|-+..+....
T Consensus 136 iG~gii~~g~l~~G~~g~aGEiGh~~v~~~g~~c----------------~cg~~--gclE~~~s~~~l~~~~~~~~~-- 195 (302)
T 3vov_A 136 IGGGVVLGGRVLRGERGQGGELGHLTLLPGGPAC----------------GCGLE--GCLEALAAGRALERDATYAFQ-- 195 (302)
T ss_dssp EEEEEEETTEECCCTTSCTTCGGGSBSSTTCCBC----------------TTSCB--SBHHHHHSHHHHHHHHHHHHT--
T ss_pred eeEEEEECCEEeeCCCCCCccccceEecCCCCCC----------------CCCCc--chHHHHhCHHHHHHHHHHhhC--
Confidence 9999999999999999999999999998763344 27777 599999999998554443210
Q ss_pred HhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 323 AQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGI 402 (484)
Q Consensus 323 ~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~i 402 (484)
. .++ ...+++. ++..+..|..+++++++++|.+|
T Consensus 196 ------------~------~~~-----------------~~~i~~~-----------a~~gd~~a~~~~~~~~~~l~~~i 229 (302)
T 3vov_A 196 ------------R------PVD-----------------TRELFRL-----------FQAGDPKAERLVLQAARYVGIGL 229 (302)
T ss_dssp ------------S------CCC-----------------HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------C------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 0 011 1223322 34455889999999999999999
Q ss_pred HHHHHHhCCCCcCCCCCcceEEEEeceee-ccchhHHHHHHHHHHHHhcccCCccEEEE-EcCChhHHHHHHHHH
Q 011505 403 LGVLKKMGRDAAKDGDKQKTVIAMDGGLY-EHYAEYSKCLENTLEELLGEELFKNIVIE-HSNDGSGIGAALLAA 475 (484)
Q Consensus 403 aaii~~~~~~~~~~~~~~~~~I~vdGsv~-~~~p~f~~~l~~~l~~l~~~~~~~~v~i~-~~~Dgs~iGAAl~Aa 475 (484)
++++..++| ..|.++|++. ...|.|.+.+++.+++...+.....|..- +++|++.+|||.++.
T Consensus 230 ~~l~~~~~p----------~~ivlgG~i~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~lg~~a~~~GAa~l~~ 294 (302)
T 3vov_A 230 ASLVKAFDP----------GVVVLGGGVALNAPEGYWEALLEAYRRYLQGWEAPPLRRARLGAEAGLLGAALTAY 294 (302)
T ss_dssp HHHHHHHCC----------SEEEEESHHHHTSCHHHHHHHHHHHHHTTTTSCCCCEEECSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHCC----------CEEEEeChhHhhhhHHHHHHHHHHHHHhcchhcCCcEEEcCCCCcHHHHHHHHHHH
Confidence 999999998 5899999999 88999999999999987654333333332 378999999998875
No 14
>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}
Probab=99.94 E-value=2.4e-25 Score=225.96 Aligned_cols=275 Identities=18% Similarity=0.211 Sum_probs=213.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|||++|++++++.|+ ++.+. +++.|. .+.+++++.|.+.+.++..+.+ ....+|++
T Consensus 25 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~~~gigi~ 87 (327)
T 4db3_A 25 MYYGFDVGGTKIEFGAFNEKLE---RVATE--RVPTPT----DDYPLLLETIAGLVAKYDQEFA--------CEGKIGLG 87 (327)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCT----TCHHHHHHHHHHHHHHHHHHHT--------SCCEEEEE
T ss_pred EEEEEEECCCEEEEEEEeCCCc---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcC--------CccEEEEE
Confidence 7999999999999999999885 55432 244443 2568899999999888876542 24679999
Q ss_pred eeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccCc
Q 011505 176 FSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTGS 243 (484)
Q Consensus 176 FSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG~ 243 (484)
++.|++ ..+|++ .+.++.+.|++.| ++|| .|.||+++..+++.|. +.++.+.+++|||+
T Consensus 88 ~pG~vd---~~~g~v~~~~~~~~~~~~l~~~l~~~~---~~pV---~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtGi 158 (327)
T 4db3_A 88 LPGMED---ADDATVLTVNVPAAKGKPLRADLEAKI---GRSV---KIENDANCFALSEAWDEELQDAPSVMGLILGTGF 158 (327)
T ss_dssp ESEEEC---TTTCCEEESSSGGGTTSCHHHHHHHHH---SSCC---EEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSSE
T ss_pred eeccEe---CCCCEEEcCCCccccCCCHHHHHHHHH---CCCE---EEecchhHHHHHHHHhCCCCCCCcEEEEEeCccc
Confidence 999998 445544 5678999999999 8885 6999999999999875 46789999999999
Q ss_pred ceEEEcccccccCcCCCCCCCCcEEEeCC---------CC-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHH
Q 011505 244 NAAYVERAQAIPKWHGVPSKSGEMVINME---------WG-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGE 313 (484)
Q Consensus 244 Na~yie~~~~i~k~~~~~~~~g~miIN~E---------wG-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLge 313 (484)
+++++.+++.+.+.++.++|.|||.++.. -| .| .|++. +|+|.++|+..|-+
T Consensus 159 G~gii~~G~l~~G~~g~aGEiGh~~v~~~~~~~~~~~~~g~~C----------------~cG~~--gclE~~~S~~al~~ 220 (327)
T 4db3_A 159 GGGLIYEGKVFSGRNNVAGELGHMRLPLDAWFHLGDNAPLLGC----------------GCGKK--GCLDSYLSGRGFEL 220 (327)
T ss_dssp EEEEEETTEECCCTTSCTTCGGGSBCCHHHHHHTCTTCCCCBC----------------TTSCB--SBGGGTSSHHHHHH
T ss_pred eEEEEECCEEeecCCCcCcccccEEeccccccccccccCCCcC----------------CCCCc--chhHhhhCHHHHHH
Confidence 99999999999999999999999999761 12 22 26666 69999999999965
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 011505 314 IVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATR 393 (484)
Q Consensus 314 i~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~R 393 (484)
..+... + + .++ ...+++. ++..+..|..++++
T Consensus 221 ~~~~~~------~--------~------~~~-----------------~~~i~~~-----------a~~gD~~a~~~~~~ 252 (327)
T 4db3_A 221 LYAHYY------G--------E------EKK-----------------AIDIIKA-----------NAAGDEKAAEHVER 252 (327)
T ss_dssp HHHHHH------S--------C------CCC-----------------HHHHHHH-----------HHHTCHHHHHHHHH
T ss_pred HHHHhc------C--------C------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHH
Confidence 544320 0 0 011 2223332 45566889999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHH
Q 011505 394 GARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGA 470 (484)
Q Consensus 394 aA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGA 470 (484)
+++++|.+|++++..++| ..|.++|++... +.|.+.+++.+++.+.+.. ..+.|+. .+|++.+||
T Consensus 253 ~~~~La~~i~~l~~~l~p----------~~IvlgGgi~~~-~~l~~~l~~~l~~~~~~~~-~~~~i~~s~lg~~a~~~GA 320 (327)
T 4db3_A 253 FMELLAICFGNIFTANDP----------HVVALGGGLSNF-ELIYEEMPKRVPKYLLSVA-KCPKIIKAKHGDSGGVRGA 320 (327)
T ss_dssp HHHHHHHHHHHHHHHHCC----------SEEEEESGGGGC-THHHHHHHHHGGGGSCTTC-CCCEEEECSCGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC----------CEEEEeCcccch-HHHHHHHHHHHHHHhcccc-CCCEEEECCCCCcHHHHHH
Confidence 999999999999999998 589999999875 6788999998887754432 3566664 789999999
Q ss_pred HHHH
Q 011505 471 ALLA 474 (484)
Q Consensus 471 Al~A 474 (484)
|.++
T Consensus 321 a~l~ 324 (327)
T 4db3_A 321 AFLN 324 (327)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 9765
No 15
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}
Probab=99.93 E-value=2.7e-25 Score=224.85 Aligned_cols=287 Identities=17% Similarity=0.190 Sum_probs=214.9
Q ss_pred CceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCcee
Q 011505 92 DEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRE 171 (484)
Q Consensus 92 ~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~ 171 (484)
...+++|+||+|||++|++++++.|+ ++.+. +++.|. ..+.+++++.|.+.|.++++. . .+...
T Consensus 16 ~~~~~~lgidiggt~i~~~l~d~~g~---il~~~--~~~~~~---~~~~~~~~~~i~~~i~~~~~~-~-------~~i~g 79 (321)
T 3r8e_A 16 YFQGMILGIDVGGTSVKFGLVTPEGE---IQNAT--RFMTAD---WVNGIGFVESMKLEIGNFLKQ-Y-------PIVKG 79 (321)
T ss_dssp ---CCEEEEECCSSEEEEEEECTTCC---EEEEE--EEEHHH---HHTTTCHHHHHHHHHHHHHHH-C-------TTCCE
T ss_pred ccCcEEEEEEECCCEEEEEEEcCCCc---EEEEE--EEeCCC---CCCHHHHHHHHHHHHHHHHhc-c-------CCeeE
Confidence 35668999999999999999999875 55432 233332 235788999999999999861 1 34678
Q ss_pred eeeeeeeeeeeeecCceEE---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEE
Q 011505 172 LGFTFSFPVMQTSINTGTL---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVI 238 (484)
Q Consensus 172 lGftFSfPv~q~~~~~G~l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglI 238 (484)
+|++++.|++ .++|++ .+.++.+.|++.+. ++| +.|.||+++..+++.+. +.++.+.++
T Consensus 80 igi~~pG~vd---~~~g~v~~~~~l~~w~~~~l~~~l~~~~~--~~p---V~v~NDa~aaalaE~~~g~~~~~~~~v~l~ 151 (321)
T 3r8e_A 80 VGIGWPGLVS---LDRTKVILLPNIPSVVNVPIVEILRSEFP--HIH---FKIENDAKCAALGEYYFGENKRMQTFILLA 151 (321)
T ss_dssp EEEEESSEEC---TTSCCEEEBTTBCCCCSCCHHHHHHHHCT--TSE---EEEEEHHHHHHHHHHHHSTTTTCSSEEEEE
T ss_pred EEEEecccEE---CCCCEEEeCCCCccccCCCHHHHHHHHcC--CCC---EEEEchHHHHHHHHHHhCCCCCCCcEEEEE
Confidence 9999999998 455544 56788888887663 566 56999999999999874 568899999
Q ss_pred EccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHH
Q 011505 239 LGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRV 318 (484)
Q Consensus 239 lGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~i 318 (484)
+|||++++++.+++.+.+.++.++|.|||. +.+ .+|+|.++|+..|-+..+..
T Consensus 152 ~GtGiG~gii~~G~l~~G~~g~aGEiGh~~-~~~--------------------------~gclE~~~S~~al~~~~~~~ 204 (321)
T 3r8e_A 152 LGTGVGSGVMMNGKLFIGGRGNGTEVGHML-TTR--------------------------GKSLENQVGINHLIAYTHEQ 204 (321)
T ss_dssp ESSSEEEEEEETTEECCCTTSCCCCGGGCB-CTT--------------------------SSBSHHHHSHHHHHHHHHHH
T ss_pred ECCceEEEEEECCEEecCCCCCCccccccc-CCC--------------------------CCcHHHhcCHHHHHHHHHHH
Confidence 999999999999999999888888888887 432 26999999999997666554
Q ss_pred HHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011505 319 LLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLA 398 (484)
Q Consensus 319 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~ 398 (484)
... .. ++.+. +. ..... ....+++. ++..+..|..+++++++++
T Consensus 205 ~~~---~~-------~~~~~---------~~---~~~~~---~~~~i~~~-----------a~~gD~~a~~~~~~~~~~L 248 (321)
T 3r8e_A 205 LAL---DV-------AKKSS---------LH---TIAEL---SPKVIADH-----------AAQGDALALAVWADIGTII 248 (321)
T ss_dssp HHH---CT-------TCCCS---------GG---GCSSC---CHHHHHHH-----------HHTTCHHHHHHHHHHHHHH
T ss_pred hhc---cC-------ccccc---------cc---ccccC---CHHHHHHH-----------HHcCCHHHHHHHHHHHHHH
Confidence 321 10 11110 00 00001 12333333 4455689999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHHH
Q 011505 399 AAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLAA 475 (484)
Q Consensus 399 Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~Aa 475 (484)
|.+|+++++.++| ..|.++|++.+..+.|.+.+++.+++...+.....+.|+. .+|++.+|||.++.
T Consensus 249 a~~i~~l~~~ldP----------~~IvlgG~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~i~~s~l~~~a~~~GAa~l~~ 318 (321)
T 3r8e_A 249 GESLVNIVRVMDL----------NNILLGGGISGAFDYFVPNLKKAMLEHLPTYYTDDMYIGKATLENDAGLLGAAGLIM 318 (321)
T ss_dssp HHHHHHHHHHHCC----------CEEEEESGGGGGHHHHHHHHHHHHHHHSCHHHHTTCEEEECSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC----------CEEEEeChhcccchHHHHHHHHHHHHhcccccCCCCEEEEcCCCCcHHHHHHHHHHH
Confidence 9999999999998 6899999999989999999999999876543233566665 67889999998873
No 16
>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A
Probab=99.93 E-value=2.3e-24 Score=219.61 Aligned_cols=295 Identities=18% Similarity=0.195 Sum_probs=214.2
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+..++|+||+|||++|++++++.|+ ++.+. ..+.| .+.+++++.|.+.+.+++++.... ..+...+
T Consensus 28 ~~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~-----~~~~~~~~~i~~~i~~~~~~~~~~----~~~i~gi 93 (343)
T 2yhw_A 28 GTLSALAVDLGGTNLRVAIVSMKGE---IVKKY--TQFNP-----KTYEERINLILQMCVEAAAEAVKL----NCRILGV 93 (343)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEECC-----SSHHHHHHHHHHHHHHHHHHHHHT----TEEEEEE
T ss_pred CCcEEEEEEECCCEEEEEEECCCCc---EEEEE--EEcCC-----CCHHHHHHHHHHHHHHHHHhcccc----cCceEEE
Confidence 3468999999999999999999885 55432 23333 245788899999999988764321 1235778
Q ss_pred eeeeeeeeeeeecCceEE----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEE
Q 011505 173 GFTFSFPVMQTSINTGTL----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVI 238 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglI 238 (484)
|++++.|++ .++|.+ .+.++.+.|++.+ ++|| .|.||++++++++.+. +.++.+.++
T Consensus 94 gi~~pG~vd---~~~g~v~~~~~~~~~w~~~~l~~~l~~~~---~~pv---~v~NDa~aaal~E~~~g~~~~~~~~v~i~ 164 (343)
T 2yhw_A 94 GISTGGRVN---PREGIVLHSTKLIQEWNSVDLRTPLSDTL---HLPV---WVDNDGNCAALAERKFGQGKGLENFVTLI 164 (343)
T ss_dssp EEEESSEEE---TTTTEEEECCTTSSSCSSEECHHHHHHHH---CSCE---EEEEHHHHHHHHHHHTSTTTTCSCEEEEE
T ss_pred EEecccCEe---CCCCEEEeCCcCCCCCcCCCHHHHHHHHH---CCCE---EEechhHHHHHHHHHhCCCCCCCcEEEEE
Confidence 999999998 344433 3467899999998 8884 6999999999999864 457899999
Q ss_pred EccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHH
Q 011505 239 LGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRV 318 (484)
Q Consensus 239 lGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~i 318 (484)
+|||++++++.+++.+.+.++.++|.|||.++.++..|. |++. +|+|.++|+..|-+.++..
T Consensus 165 ~GtGiG~gii~~G~l~~G~~g~aGEiGh~~~~~~g~~c~----------------cG~~--gclE~~~s~~al~~~~~~~ 226 (343)
T 2yhw_A 165 TGTGIGGGIIHQHELIHGSSFCAAELGHLVVSLXGPDCS----------------CGSH--GCIEAYASGMALQREAKKL 226 (343)
T ss_dssp ESSSEEEEEEETTEECCCTTSCTTCGGGCBCCC--CBCT----------------TSCB--SBHHHHHSHHHHHHHHHHH
T ss_pred ECCCEEEEEEECCEEecCCCCcccccCCEEEccCCCcCC----------------CCCC--CcHHHhcCHHHHHHHHHHh
Confidence 999999999999999999888899999999986644553 7776 5999999999996665543
Q ss_pred HHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011505 319 LLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLA 398 (484)
Q Consensus 319 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~ 398 (484)
.. .. +..+.. ... ..++ .. ....+++. ++..+..|..+++++++++
T Consensus 227 ~~----~~-------~~~~~~-~~~--------~~~~--~~-~~~~v~~~-----------a~~gd~~a~~il~~~~~~L 272 (343)
T 2yhw_A 227 HD----ED-------LLLVEG-MSV--------PKDE--AV-GALHLIQA-----------AKLGNAKAQSILRTAGTAL 272 (343)
T ss_dssp HH----TT-------CSCCTT-CCC--------------CC-CHHHHHHH-----------HHTTCHHHHHHHHHHHHHH
T ss_pred hc----cc-------cccccc-ccc--------cccc--cC-CHHHHHHH-----------HHcCCHHHHHHHHHHHHHH
Confidence 21 11 000000 000 0000 00 12333333 4556688999999999999
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE--cCChhHHHHHHHHHH
Q 011505 399 AAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH--SNDGSGIGAALLAAS 476 (484)
Q Consensus 399 Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~--~~Dgs~iGAAl~Aa~ 476 (484)
|.+|+++++.++| ..|.++|++. +.|.+.+++.+++...+. ...+.++. ..|.+.+|||.++.-
T Consensus 273 a~~i~~l~~~l~P----------~~IvlgG~i~---~~~~~~l~~~l~~~~~~~-~~~~~i~~s~~~~~~~~GAa~l~~~ 338 (343)
T 2yhw_A 273 GLGVVNILHTMNP----------SLVILSGVLA---SHYIHIVKDVIRQQALSS-VQDVDVVVSDLVDPALLGAASMVLD 338 (343)
T ss_dssp HHHHHHHHHHTCC----------SEEEEESTTH---HHHHHHHHHHHHHHSCGG-GTTCEEEECCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----------CEEEEeCCcH---HHHHHHHHHHHHHhcccc-cCCcEEEEccCCCchHHHHHHHHHH
Confidence 9999999999998 5788999996 578899998888764432 23455554 357789999988753
No 17
>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10
Probab=99.93 E-value=6.2e-25 Score=222.28 Aligned_cols=276 Identities=20% Similarity=0.221 Sum_probs=207.4
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
+++|+||+|||++|++++++.|+ ++.+. +++.+. .+.+++++.|.+.+.++..+.+ ....+|+
T Consensus 24 ~~~lgiDiGgt~i~~~l~d~~g~---il~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~--------~i~~igi 86 (327)
T 2ap1_A 24 AMYYGFDIGGTKIALGVFDSTRR---LQWEK--RVPTPH----TSYSAFLDAVCELVEEADQRFG--------VKGSVGI 86 (327)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEE--EEECCC----SCHHHHHHHHHHHHHHHHHHHT--------SCCEEEE
T ss_pred ceEEEEEECCCEEEEEEEeCCCC---EEEEE--EecCCC----CCHHHHHHHHHHHHHHHHHhcC--------CccEEEE
Confidence 47999999999999999999885 55432 244332 1467888888888888775432 2466999
Q ss_pred eeeeeeeeeecCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccC
Q 011505 175 TFSFPVMQTSINTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTG 242 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG 242 (484)
.++.|++. .+|++ .+.++.+.|++.+ ++| +.|.||++++++++.+. +.++.+.+++|||
T Consensus 87 ~~pG~vd~---~~g~v~~~~~~~~~~~~l~~~l~~~~---~~p---v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG 157 (327)
T 2ap1_A 87 GIPGMPET---EDGTLYAANVPAASGKPLRADLSARL---DRD---VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 157 (327)
T ss_dssp EESSBSCC---TTSCCBCTTCTTTTTSCHHHHHHHHH---TSC---EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS
T ss_pred EeeeeEEC---CCCEEEccCCCccCCCChHHHHHHHH---CCC---EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc
Confidence 99999983 33433 5678999999998 888 46999999999999865 4678999999999
Q ss_pred cceEEEcccccccCcCCCCCCCCcEEEeCCC---------C-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHH
Q 011505 243 SNAAYVERAQAIPKWHGVPSKSGEMVINMEW---------G-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLG 312 (484)
Q Consensus 243 ~Na~yie~~~~i~k~~~~~~~~g~miIN~Ew---------G-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLg 312 (484)
++++++.+++.+.+.++.+++.|||.++..+ | .| .|+++ +|+|.++|+..|-
T Consensus 158 iG~giv~~G~l~~G~~g~aGE~Gh~~~~~~~~~~~~~~~~g~~c----------------~cG~~--gcle~~~s~~~l~ 219 (327)
T 2ap1_A 158 VGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRC----------------GCGQM--GCIENYLSGRGFA 219 (327)
T ss_dssp EEEEEEETTEEECCTTSCTTCGGGSBCCHHHHHHHCTTSCCCBC----------------TTSCB--SBTHHHHSHHHHH
T ss_pred EEEEEEECCEEeecCCCcccccccEEEecCcccccccccCCCcC----------------CCCch--hhHHHHhCHHHHH
Confidence 9999999999999988888999999987652 2 12 36666 6999999999885
Q ss_pred HHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 011505 313 EIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVAT 392 (484)
Q Consensus 313 ei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~ 392 (484)
+..+... + .. .+ ...+++. ++..+..|..+++
T Consensus 220 ~~~~~~~------~--------~~------~~-----------------~~~i~~~-----------a~~gd~~a~~il~ 251 (327)
T 2ap1_A 220 WLYQHYY------D--------QS------LQ-----------------APEIIAL-----------WEQGDEQAHAHVE 251 (327)
T ss_dssp HHHHHHH------C--------CC------CC-----------------HHHHHHH-----------HHTTCHHHHHHHH
T ss_pred HHHHHhc------C--------CC------CC-----------------HHHHHHH-----------HHcCCHHHHHHHH
Confidence 5433210 0 00 01 1223332 4445588999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHH
Q 011505 393 RGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIG 469 (484)
Q Consensus 393 RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iG 469 (484)
++++++|.+|++++..++| ..|.++|++....+.|.+ +++.+++.+.+ ....+.|+. .++++.+|
T Consensus 252 ~~~~~La~~i~~l~~~l~p----------~~IvlgG~i~~~~~~~~~-l~~~l~~~~~~-~~~~~~i~~s~~~~~a~~~G 319 (327)
T 2ap1_A 252 RYLDLLAVCLGNILTIVDP----------DLLVIGGGLSNFTAITTQ-LAERLPRHLLP-VARAPRIERARHGDAGGMRG 319 (327)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------SEEEEESGGGGSTHHHHS-SGGGSGGGSCT-TCCCCEEEECSCTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC----------CEEEEeChhhcchhHHHH-HHHHHHHhhcc-ccCCCEEEEcCCCCcHHHHH
Confidence 9999999999999999998 469999999988765554 88877766543 234566665 67899999
Q ss_pred HHHHH
Q 011505 470 AALLA 474 (484)
Q Consensus 470 AAl~A 474 (484)
||.++
T Consensus 320 Aa~la 324 (327)
T 2ap1_A 320 AAFLH 324 (327)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 99875
No 18
>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}
Probab=99.93 E-value=2.7e-24 Score=215.29 Aligned_cols=271 Identities=17% Similarity=0.198 Sum_probs=202.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
+++++|+|||++|++++++.|+ ++.+. +++.|. .+.+++++.+. +++++. .+...+|++
T Consensus 5 ~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~----~~~~~~~~~i~----~~~~~~--------~~i~gigi~ 63 (297)
T 4htl_A 5 KIAAFDIGGTALKMGVVLPHGE---IILTK--SAEISG----SDGDQILAEMK----VFLAEN--------TDVTGIAVS 63 (297)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEE--EEECST----TCHHHHHHHHH----HHHHTC--------TTCCEEEEE
T ss_pred EEEEEEeCCCeEEEEEECCCCC---EEEEE--EecCCC----CCHHHHHHHHH----HHHhhc--------CCeeEEEEe
Confidence 7899999999999999999885 55432 244432 23355555544 444332 236789999
Q ss_pred eeeeeeeeecCceEE---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEccC
Q 011505 176 FSFPVMQTSINTGTL---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGTG 242 (484)
Q Consensus 176 FSfPv~q~~~~~G~l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGTG 242 (484)
++.|++ ..+|++ .+.++.+.|++.+ ++| +.+.||+++..+++.|. +.++.+.+++|||
T Consensus 64 ~pG~vd---~~~g~v~~~~~l~~w~~~~l~~~l~~~~---~~p---V~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG 134 (297)
T 4htl_A 64 APGYVN---PKTGLITMGGAIRRFDNFNLKEWLEAET---GLP---VAIENDANCALLAEKWLGKGQDLDDFLCLTIGTG 134 (297)
T ss_dssp ESSEEC---TTTCEEEECTTCGGGTTEEHHHHHHHHH---CSC---EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS
T ss_pred cCccee---CCCCEEEeCCCCCCccCCCHHHHHHHHH---CcC---EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECcc
Confidence 999998 555655 4668999999999 898 46999999999999874 5688999999999
Q ss_pred cceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHH
Q 011505 243 SNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRM 322 (484)
Q Consensus 243 ~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~ 322 (484)
++++++.+++.+.+.++.++|.|||+++...+. .++..|+|.++|+..|-+..+...
T Consensus 135 iG~giv~~G~l~~G~~g~aGEiGh~~~~~~~~~--------------------~~~~~~le~~~s~~~l~~~~~~~~--- 191 (297)
T 4htl_A 135 IGGGIFSNGELVRGGRFRAGEFGYMFSERPGAF--------------------RPGKYTLNETTTMLVLRRQYAELT--- 191 (297)
T ss_dssp EEEEEEETTEECCCTTSCCCCGGGSBSSCCCSS--------------------CGGGGBHHHHSSHHHHHHHHHHHH---
T ss_pred eEEEEEECCEEEecCCCCcccccceEecCCCCc--------------------CcccCcHHHhccHHHHHHHHHHHh---
Confidence 999999999999999999999999998754221 124579999999999855443211
Q ss_pred HhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 323 AQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGI 402 (484)
Q Consensus 323 ~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~i 402 (484)
+ .+. ..++ ...+++. ++..+..|..+++++++++|.+|
T Consensus 192 ---~------~~~-----~~~~-----------------~~~i~~~-----------a~~gd~~a~~~~~~~~~~La~~i 229 (297)
T 4htl_A 192 ---G------RPL-----EEIT-----------------GEEIFAN-----------YDAHDAVSERLITEFYTGICTGL 229 (297)
T ss_dssp ---C------CCG-----GGCC-----------------HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ---c------CCc-----cCCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHH
Confidence 0 000 0011 2223332 44556889999999999999999
Q ss_pred HHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHHHH
Q 011505 403 LGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLAAS 476 (484)
Q Consensus 403 aaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~Aa~ 476 (484)
+++++.++| ..|.++|++.+. +.|.+.+++.+++... ..+.|+. ++|++.+|||.++.-
T Consensus 230 ~~l~~~~~p----------~~IvlgGgi~~~-~~~~~~l~~~l~~~~~----~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 230 YNLIYLFDP----------THIFIGGGITSR-PTFIAELKHHMESFGL----RDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp HHHHHHHCC----------SEEEEESGGGGS-TTHHHHHHHHHTTTCC----TTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------CEEEEeCccccc-HHHHHHHHHHHHHhcc----CCCeEEECCcCChHHHHhHHHHHHH
Confidence 999999998 589999999975 7899999998875432 2445553 789999999988753
No 19
>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}
Probab=99.92 E-value=4.9e-24 Score=214.87 Aligned_cols=276 Identities=18% Similarity=0.189 Sum_probs=184.7
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+.+++|+||+|||++|++++++.|+ ++.+. +.+.|. ...+++++.|.+.+.+++++.+. +...+
T Consensus 5 ~~~~~lgiDiGgt~i~~~l~d~~G~---il~~~--~~~~~~----~~~~~~~~~i~~~i~~~~~~~~~-------~i~gi 68 (310)
T 3htv_A 5 QHNVVAGVDMGATHIRFCLRTAEGE---TLHCE--KKRTAE----VIAPGLVSGIGEMIDEQLRRFNA-------RCHGL 68 (310)
T ss_dssp CEEEEEEEEECSSEEEEEEEETTSC---EEEEE--EEEHHH----HHTTCHHHHHHHHHHHHHHHHTE-------EEEEE
T ss_pred CCCEEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCcc----ccHHHHHHHHHHHHHHHHHhcCC-------CeeEE
Confidence 5678999999999999999999885 55432 233332 12567888899888888766432 25778
Q ss_pred eeeeeeeeeeeecCceEE--------E---CccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc---cCCCcEEEEE
Q 011505 173 GFTFSFPVMQTSINTGTL--------V---GRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRY---TNKDVVAAVI 238 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l--------~---G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y---~~~~~~iglI 238 (484)
|++.+.|++ .++|++ . +.++.+.|++.+ ++|| .+.||+++.++++.+ .+.++.+.++
T Consensus 69 gi~~pG~vd---~~~g~v~~~~~l~~~~~~~~~l~~~l~~~~---~~pv---~v~NDanaaa~~e~~~~~~~~~~~~~v~ 139 (310)
T 3htv_A 69 VMGFPALVS---KDKRTIISTPNLPLTAADLYDLADKLENTL---NCPV---EFSRDVNLQLSWDVVENRLTQQLVLAAY 139 (310)
T ss_dssp EEEESSCBC---TTSSCBCSCCSSSCCHHHHTTHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHTTCTTSCEEEEE
T ss_pred EEeccccEe---CCCCEEEeCCCCCCccccCccHHHHHHHHh---CCCE---EEeeHHHHHHHHHHhhcccCCceEEEEE
Confidence 999999998 444544 1 257889999988 8884 699999999876643 2457899999
Q ss_pred EccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHH
Q 011505 239 LGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRV 318 (484)
Q Consensus 239 lGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~i 318 (484)
+|||++++++.+++.+.+.++.++|.|||.|+.+...|. |++. +|+|.++|+..|-+..+.
T Consensus 140 ~GtGiG~gii~~G~l~~G~~g~aGEiGh~~v~~~g~~C~----------------cG~~--GclE~~~S~~al~~~~~~- 200 (310)
T 3htv_A 140 LGTGMGFAVWMNGAPWTGAHGVAGELGHIPLGDMTQHCA----------------CGNP--GCLETNCSGMALRRWYEQ- 200 (310)
T ss_dssp ESSSEEEEEEETTEEECCSSSCCCC---------------------------------------CCSSSHHHHHHHHTT-
T ss_pred eceeEEEEEEECCEEeecCCCCceeCcceEeCCCCCcCC----------------CCCC--ceehhhhCHHHHHHHHHh-
Confidence 999999999999999999999999999999986533443 7777 699999999988432110
Q ss_pred HHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 011505 319 LLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLA 398 (484)
Q Consensus 319 l~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~ 398 (484)
. .+ .++.+.+ ++. .. .+++++.++++.
T Consensus 201 ------~--------~~------~~~~~~~-----------------~~~-~~-----------~d~~~~~~~~~~---- 227 (310)
T 3htv_A 201 ------Q--------PR------NYPLRDL-----------------FVH-AE-----------NAPFVQSLLENA---- 227 (310)
T ss_dssp ------S--------CC------SSCGGGH-----------------HHH-HT-----------TCHHHHHHHHHH----
T ss_pred ------c--------cC------CCCHHHH-----------------HHH-Hc-----------CChHHHHHHHHH----
Confidence 0 00 0111111 111 00 123444555554
Q ss_pred HHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhc-ccCCccEEEEE---cCChhHHHHHHHH
Q 011505 399 AAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLG-EELFKNIVIEH---SNDGSGIGAALLA 474 (484)
Q Consensus 399 Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~-~~~~~~v~i~~---~~Dgs~iGAAl~A 474 (484)
|.+|+++++.++| ..|.++|++.+..+.|.+.+.+.+++.+. +.....++|+. ++|++.+|||.++
T Consensus 228 a~~la~l~~~~dP----------~~IvlgG~v~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~s~lg~~ag~~GAa~la 297 (310)
T 3htv_A 228 ARAIATSINLFDP----------DAVILGGGVMDMPAFPRETLVAMTQKYLRRPLPHQVVRFIAASSSDFNGAQGAAILA 297 (310)
T ss_dssp HHHHHHHHHHHCC----------SEEEEECTTTTSTTCCHHHHHHHHHHTSCTTTTTTTCEEEECCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC----------CEEEEeCchhccchhHHHHHHHHHHHHhhcccccCCcEEEEcCCCCcHHHHHHHHHH
Confidence 4467888999998 68999999999988889999998888763 21223566765 7899999999887
Q ss_pred H
Q 011505 475 A 475 (484)
Q Consensus 475 a 475 (484)
.
T Consensus 298 ~ 298 (310)
T 3htv_A 298 H 298 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 20
>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10
Probab=99.92 E-value=9.3e-25 Score=216.97 Aligned_cols=270 Identities=17% Similarity=0.167 Sum_probs=203.2
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|||++|++++++.|+ ++.+. +++.+.. .+.+++++.|.+.+.+++++ ...+|+.
T Consensus 2 ~~lgidiggt~~~~~l~d~~g~---il~~~--~~~~~~~---~~~~~~~~~i~~~i~~~~~~-----------~~~igi~ 62 (289)
T 2aa4_A 2 TTLAIDIGGTKLAAALIGADGQ---IRDRR--ELPTPAS---QTPEALRDALSALVSPLQAH-----------AQRVAIA 62 (289)
T ss_dssp CEEEEEECSSEEEEEEECTTCC---EEEEE--EEECCSS---CCHHHHHHHHHHHHTTTGGG-----------CSEEEEE
T ss_pred eEEEEEeCCCEEEEEEECCCCC---EEEEE--EecCCCC---CCHHHHHHHHHHHHHHHHhh-----------CCEEEEE
Confidence 4799999999999999999875 55432 2443321 24677888887777666432 2359999
Q ss_pred eeeeeeeeecCceEE---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCC---cEEEEEEccCc
Q 011505 176 FSFPVMQTSINTGTL---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKD---VVAAVILGTGS 243 (484)
Q Consensus 176 FSfPv~q~~~~~G~l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~---~~iglIlGTG~ 243 (484)
++.|++ .++|++ .+.++.+.|++.+ ++| +.+.||++++++++.+.... +.+.+++|||+
T Consensus 63 ~pG~vd---~~~g~v~~~~~~~~w~~~~l~~~l~~~~---~~p---v~v~NDa~aaa~~e~~~g~~~~~~~v~l~~GtGi 133 (289)
T 2aa4_A 63 STGIIR---DGSLLALNPHNLGGLLHFPLVKTLEQLT---NLP---TIAINDAQAAAWAEFQALDGDITDMVFITVSTGV 133 (289)
T ss_dssp ESSEEE---TTEEECSSGGGGGGGTTCCHHHHHHHHH---CSC---EEEEEHHHHHHHHHHHTSCTTCCCEEEEEESSSE
T ss_pred ecccee---CCCCEEEeCCCCCcccCCChHHHHHHHH---CCC---EEEechHHHHHHHHHHhCCCCCceEEEEEeCccE
Confidence 999998 444443 5678999999998 888 46999999999999865321 89999999999
Q ss_pred ceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHH
Q 011505 244 NAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMA 323 (484)
Q Consensus 244 Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~ 323 (484)
+++++.+++.+.+.++.+++.|||.++..+..|. |++. +|+|.++|+..|-+..+.
T Consensus 134 G~gii~~G~l~~G~~g~aGE~Gh~~~~~~g~~c~----------------cG~~--gcle~~~s~~~l~~~~~~------ 189 (289)
T 2aa4_A 134 GGGVVSGCKLLTGPGGLAGHIGHTLADPHGPVCG----------------CGRT--GCVEAIASGRGIAAAAQG------ 189 (289)
T ss_dssp EEEEEETTEEECCTTSCCCCGGGSBSCTTSCBCT----------------TSCB--SBHHHHHSHHHHHHTCCG------
T ss_pred EEEEEECCEEeeCCCCCCccCCcEEECCCCCcCC----------------CCCc--hhHHHHhCHHHHHHHHHH------
Confidence 9999999999999998899999999987655553 6776 599999999876321110
Q ss_pred hccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 324 QEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGIL 403 (484)
Q Consensus 324 ~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~ia 403 (484)
.+ + + . ....+++. ++..+..|..+++++++.+|.+|+
T Consensus 190 -~~-------~-------------------~--~---~~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~~i~ 226 (289)
T 2aa4_A 190 -EL-------A-------------------G--A---DAKTIFTR-----------AGQGDEQAQQLIHRSARTLARLIA 226 (289)
T ss_dssp -GG-------T-------------------T--C---CHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred -hc-------c-------------------C--C---CHHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 0 12223332 344568899999999999999999
Q ss_pred HHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE---cCChhHHHHHHHH
Q 011505 404 GVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH---SNDGSGIGAALLA 474 (484)
Q Consensus 404 aii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~---~~Dgs~iGAAl~A 474 (484)
++++.++| ..|.++|++. ..+.|.+.+++.+++...+ ..+.++. .+|++.+|||.++
T Consensus 227 ~l~~~l~p----------~~ivlgG~~~-~~~~~~~~l~~~l~~~~~~---~~~~i~~~~~~~~a~~~GAa~l~ 286 (289)
T 2aa4_A 227 DIKATTDC----------QCVVVGGSVG-LAEGYLALVETYLAQEPAA---FHVDLLAAHYRHDAGLLGAALLA 286 (289)
T ss_dssp HHHHHHCC----------SEEEEEHHHH-TSTTHHHHHHHHHTTSCGG---GCCEEEECSCSSCHHHHHHHHHH
T ss_pred HHHHhcCC----------CEEEEeCccc-ccHHHHHHHHHHHHHhcCc---cCCEEEECCCCCchHHHHHHHHH
Confidence 99999998 4699999998 7899999999998875322 1344543 7889999999876
No 21
>3epq_A Putative fructokinase; SCRK, ADP binding, PSI2, MCSG, structural GENO protein structure initiative, midwest center for structural genomics; HET: MLY MSE MLZ ADP; 1.66A {Bacillus subtilis} PDB: 1xc3_A 3ohr_A* 3lm9_A*
Probab=99.90 E-value=3.5e-23 Score=207.99 Aligned_cols=260 Identities=17% Similarity=0.208 Sum_probs=187.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++++||+|||++|++++++.|+ ++.+ ..+|+. +.+++++.|++ ++++. +...+|++
T Consensus 4 ~~lgiDiGgt~i~~~l~d~~G~---il~~----~~~~t~----~~~~~l~~i~~----~~~~~---------~i~gigi~ 59 (302)
T 3epq_A 4 MLGGIEAGGTXFVCAVGREDGT---IIDR----IEFPTX----MPDETIEXVIQ----YFSQF---------SLQAIGIG 59 (302)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEE----EEEECC----CHHHHHHHHHH----HHTTS---------CCSEEEEE
T ss_pred EEEEEEECcceeEEEEEECCCc---EEEE----EEecCC----ChHHHHHHHHH----HhccC---------CceEEEEE
Confidence 6899999999999999999885 5543 223432 34555555544 33321 35789999
Q ss_pred eeeeeeeee--cCceEE--------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCCcEEEEEEcc
Q 011505 176 FSFPVMQTS--INTGTL--------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKDVVAAVILGT 241 (484)
Q Consensus 176 FSfPv~q~~--~~~G~l--------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~~~iglIlGT 241 (484)
++.|++... ...|++ .+.|+.+.|++.| ++| +.+.||+++..+++.|. +.++.+.+++||
T Consensus 60 ~pG~vd~~~~~~~~G~i~~~~~~~w~~~~l~~~l~~~~---~~p---V~v~NDanaaalaE~~~G~~~~~~~~~~l~~Gt 133 (302)
T 3epq_A 60 SFGPVDNDXTSQTYGTITATPXAGWRHYPFLQTVXNEM---XIP---VGFSTDVNAAALGEFLFGEAXGLDSCLYITIGT 133 (302)
T ss_dssp ECSSEECCTTSTTTTEECCCSSTTTBTCCHHHHHHHHH---CSC---EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESS
T ss_pred eceeeccccccccccEEecCCCCCccCCChHHHHHHHh---CCC---EEEechhHHHHHHHHHhCCCCCCCcEEEEEECC
Confidence 999998432 111544 7889999999999 898 46999999999999875 468899999999
Q ss_pred CcceEEEcccccccCcCCCCCCCCcEEEeCCCC-CCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHH
Q 011505 242 GSNAAYVERAQAIPKWHGVPSKSGEMVINMEWG-DFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLL 320 (484)
Q Consensus 242 G~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG-~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~ 320 (484)
|++++++.+++.+.+.+ ++|.|||.++.... .+. ..|...+ +|+|.++|+..|-+..+.
T Consensus 134 GiG~gii~~G~l~~G~~--agEiGh~~v~~~~~~~~~--------------~~C~~~~-gclE~~~S~~al~~~~~~--- 193 (302)
T 3epq_A 134 GIGAGAIVEGRLLQGLS--HPEMGHIYIRRHPDDVYQ--------------GXCPYHG-DCFEGLASGPAIEARWGX--- 193 (302)
T ss_dssp SEEEEEEETTEECCSSS--CCCGGGCCCCCCTTCCCC--------------CSBTTTB-SSHHHHHSHHHHHHHHSS---
T ss_pred ceEEEEEECCEEcccCC--CCccceEEEecCCCCCcC--------------cccCCCC-cchhhhCCHHHHHHHhhc---
Confidence 99999999999888865 47999999976421 111 0133333 699999999998432110
Q ss_pred HHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 321 RMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAA 400 (484)
Q Consensus 321 ~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa 400 (484)
.+ .. +. -+..+++++++++|.
T Consensus 194 ----~~-------------------~~---~~---------------------------------~~~~~~~~~~~~La~ 214 (302)
T 3epq_A 194 ----KA-------------------AD---LS---------------------------------DIAQVWELEGYYIAQ 214 (302)
T ss_dssp ----CG-------------------GG---GT---------------------------------TCHHHHHHHHHHHHH
T ss_pred ----cc-------------------cc---cc---------------------------------chHHHHHHHHHHHHH
Confidence 00 00 00 012466788999999
Q ss_pred HHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCC-------ccEEEE---EcCChhHHHH
Q 011505 401 GILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELF-------KNIVIE---HSNDGSGIGA 470 (484)
Q Consensus 401 ~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~-------~~v~i~---~~~Dgs~iGA 470 (484)
+|+++++.++| ..|.++|++.+.. .|.+.+++.+++.+..... ..+.|+ +.+|++.+||
T Consensus 215 ~i~nl~~~ldP----------e~IviGGgi~~~~-~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~I~~s~lg~~a~l~GA 283 (302)
T 3epq_A 215 ALAQYILILAP----------XXIILGGGVMQQX-QVFSYIYQYVPKIMNSYLDFSELSDDISDYIVPPRLGSNAGIIGT 283 (302)
T ss_dssp HHHHHHHHTCC----------SCEEEESSGGGCT-HHHHHHHHHHHHHHTTCSCCGGGTTTGGGTEECCTTGGGHHHHHH
T ss_pred HHHHHHHHHCc----------hhhhcCchhhhhH-HHHHHHHHHHHHHHhhhccCcccccccCceEEECCcCChHHHHHH
Confidence 99999999999 5899999998764 4899999999887632110 122344 4889999999
Q ss_pred HHHHH
Q 011505 471 ALLAA 475 (484)
Q Consensus 471 Al~Aa 475 (484)
|.++.
T Consensus 284 a~l~~ 288 (302)
T 3epq_A 284 LVLAH 288 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98874
No 22
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10
Probab=99.90 E-value=1.4e-22 Score=201.77 Aligned_cols=267 Identities=18% Similarity=0.220 Sum_probs=195.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|||++|++++++.|+ ++.+ ..+|.. .+.+++++.|.+ ++++ . +...+|++
T Consensus 5 ~~lgidiggt~i~~~l~d~~g~---il~~----~~~~~~---~~~~~~~~~i~~----~i~~--~-------~i~gigi~ 61 (292)
T 2gup_A 5 TIATIDIGGTGIKFASLTPDGK---ILDK----TSISTP---ENLEDLLAWLDQ----RLSE--Q-------DYSGIAMS 61 (292)
T ss_dssp CEEEEEEETTEEEEEEECTTCC---EEEE----EEECCC---SSHHHHHHHHHH----HHTT--S-------CCSEEEEE
T ss_pred EEEEEEECCCEEEEEEECCCCC---EEEE----EEEeCC---CCHHHHHHHHHH----HHHh--C-------CCcEEEEE
Confidence 4899999999999999999875 5543 223332 234555555544 4433 1 25679999
Q ss_pred eeeeeeeeecCceEE---------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccc--cCCCcEEEEEEccCcc
Q 011505 176 FSFPVMQTSINTGTL---------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRY--TNKDVVAAVILGTGSN 244 (484)
Q Consensus 176 FSfPv~q~~~~~G~l---------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y--~~~~~~iglIlGTG~N 244 (484)
.+.|++ ..+|++ .+.++.+.| +.+ ++|| .+.||++++++++.+ .+.++.+.+++|||++
T Consensus 62 ~pG~vd---~~~g~v~~~~~~~~~~~~~l~~~l-~~~---~~pv---~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtGiG 131 (292)
T 2gup_A 62 VPGAVN---QETGVIDGFSAVPYIHGFSWYEAL-SSY---QLPV---HLENDANCVGLSELLAHPELENAACVVIGTGIG 131 (292)
T ss_dssp ESSEEC---TTTCBEESCCSSGGGSSSBHHHHT-GGG---CCCE---EEEEHHHHHHHHHHHHCTTCSSEEEEEESSSEE
T ss_pred ecCccc---CCCCEEEecCCCCcccCCCHHHHH-HHc---CCCE---EEechHHHHHHHHHHhcCCCCeEEEEEECCceE
Confidence 999998 444544 366888888 777 8884 699999999999976 4567899999999999
Q ss_pred eEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHh
Q 011505 245 AAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQ 324 (484)
Q Consensus 245 a~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~ 324 (484)
++++.+++.+.+.++.+++.|||.++. ++ + + .+|+|.++|+..|-+.++.. .
T Consensus 132 ~giv~~G~l~~G~~g~aGEiGh~~~~~----~~----------------~-~--~gcle~~~s~~~l~~~~~~~---~-- 183 (292)
T 2gup_A 132 GAMIINGRLHRGRHGLGGEFGYMTTLA----PA----------------E-K--LNNWSQLASTGNMVRYVIEK---S-- 183 (292)
T ss_dssp EEEEETTEEECCTTSCTTCGGGCBSSC----CS----------------S-S--CCBHHHHHSHHHHHHHHHHH---H--
T ss_pred EEEEECCEEEecCCCCCccceeEEecc----CC----------------C-C--CCcHHHhcCHHHHHHHHHHh---h--
Confidence 999999999999888889999998864 11 1 2 36999999998885443321 1
Q ss_pred ccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 325 EAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILG 404 (484)
Q Consensus 325 ~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaa 404 (484)
+ . + .++ ...+++. ++..+..|..+++++++++|.+|++
T Consensus 184 -~-----~-~-------~~~-----------------~~~v~~~-----------a~~gd~~a~~i~~~~~~~L~~~i~~ 221 (292)
T 2gup_A 184 -G-----H-T-------DWD-----------------GRKIYQE-----------AAAGNILCQEAIERMNRNLAQGLLN 221 (292)
T ss_dssp -S-----S-C-------CCC-----------------HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-----C-C-------CCC-----------------HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 001 1223222 3445588999999999999999999
Q ss_pred HHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCC--ccEEEE---EcCChhHHHHHHHHHH
Q 011505 405 VLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELF--KNIVIE---HSNDGSGIGAALLAAS 476 (484)
Q Consensus 405 ii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~--~~v~i~---~~~Dgs~iGAAl~Aa~ 476 (484)
+++.++| ..|.++|++. ..|.|.+.+++.+++...+... ..+.++ +.+|++.+|||.++.-
T Consensus 222 l~~~l~p----------~~IvlgG~i~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~~ 287 (292)
T 2gup_A 222 IQYLIDP----------GVISLGGSIS-QNPDFIQGVKKAVEDFVDAYEEYTVAPVIQACTYHADANLYGALVNWLQ 287 (292)
T ss_dssp HHHHHCC----------SEEEEESGGG-GCHHHHHHHHHHHHHHHHHCTTCCSCCCEEECSCSTTHHHHHHHHHHHH
T ss_pred HHHHhCC----------CEEEEeCccc-cchHHHHHHHHHHHHhhcccccccCCCeEEEcccCChhhHHHHHHHHHH
Confidence 9999998 5799999996 5799999999999887543211 224444 4788999999988753
No 23
>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}
Probab=99.90 E-value=1.2e-22 Score=209.13 Aligned_cols=258 Identities=17% Similarity=0.117 Sum_probs=193.3
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHH---HHHHHHhhcccccccCCCCc
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAA---ELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~---~i~~fl~~~~~~~~~~~~~~ 169 (484)
+.+++|++|+|||++|+++++ .|+ ++.+. .+++.+. . +.+++++.|++ .+.++++ .+.
T Consensus 7 d~~~~lgiDIGgt~i~~~l~d-~G~---il~~~-~~~~~~~---~-~~~~~l~~i~~~~~~i~~~~~----------~~i 67 (366)
T 3mcp_A 7 DNRIVMTLDAGGTNFVFSAIQ-GGK---EIADP-VVLPACA---D-CLDKCLGNLVEGFKAIQAGLP----------EAP 67 (366)
T ss_dssp CCCEEEEEECSSSEEEEEEEE-TTE---ECSCC-EEEECCT---T-CHHHHHHHHHHHHHHHHTTCS----------SCC
T ss_pred CCCEEEEEEECcceEEEEEEE-CCE---EEEEE-EEEECCC---C-CHHHHHHHHHHHHHHHHHHhh----------cCC
Confidence 456899999999999999999 774 54321 0234332 2 57888888888 6655543 236
Q ss_pred eeeeeeeeeeeeeeecCceEE---------E-CccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC---------
Q 011505 170 RELGFTFSFPVMQTSINTGTL---------V-GRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--------- 230 (484)
Q Consensus 170 ~~lGftFSfPv~q~~~~~G~l---------~-G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--------- 230 (484)
..+|++++.|++ ..+|++ . |.|+.+.|++.| ++| +.|.||+++..+++.|.+
T Consensus 68 ~gIGIavPG~Vd---~~~G~i~~~~nlp~w~~~~~l~~~L~~~~---g~P---V~veNDanaaAlgE~~~G~~p~~~~~l 138 (366)
T 3mcp_A 68 VAISFAFPGPAD---YQAGIIGDLPNFPSFRGGVALGPFLEDIF---GIP---VFINNDGSLFAYGEALTGVLPEINRRL 138 (366)
T ss_dssp CEEEEECCSSEE---TTTTEECCCTTCGGGTTCBCHHHHHHHHH---CSC---EEEECHHHHHHHHHHHTSHHHHHHHHH
T ss_pred eEEEEEecceEe---CCCCEEEeCCCcccccCCCCHHHHHHHHH---CCC---EEEechhhHHHHHHHHhCCCccccccc
Confidence 789999999998 555655 4 789999999999 999 469999999999998654
Q ss_pred --------CCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCccee
Q 011505 231 --------KDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIF 302 (484)
Q Consensus 231 --------~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~f 302 (484)
.++.+.+.+|||++++++.+++.+.+.++.++|.|||. | . |++. +|+
T Consensus 139 ~~~g~~~~~~~~v~l~lGtGIG~givi~G~l~~G~~g~AGEiGH~~-~----~------------------CG~~--Gcl 193 (366)
T 3mcp_A 139 REAGSTKRYKNLLGVTLGTGFGAGVVIDGELLRGDNAAGGYVWCLR-N----K------------------KYPE--YIV 193 (366)
T ss_dssp HHTTCCCCCCEEEEEEESSSEEEEEEETTEECCCTTSCTTCCTTSB-C----S------------------SCTT--SBG
T ss_pred ccccccCCCCcEEEEEECCcceEEEEECCEEecCCCCCCceeeccc-C----C------------------CCCC--cce
Confidence 57899999999999999999999999999889999998 4 2 4555 699
Q ss_pred eeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHH-
Q 011505 303 EKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRK- 381 (484)
Q Consensus 303 Ekm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~- 381 (484)
|.++|+..|-+..+.... . ++ .++ ..++++. ++
T Consensus 194 E~~~S~~al~~~~~~~~~-----------~-~~------~~~-----------------~~~i~~~-----------a~~ 227 (366)
T 3mcp_A 194 EESVSIRAVMRVYAERSG-----------D-AG------ART-----------------PKEIFEI-----------AEG 227 (366)
T ss_dssp GGTSSHHHHHHHHHHHSS-----------C-CS------CCC-----------------HHHHHHH-----------HHT
T ss_pred eeeecHHHHHHHHHHhhC-----------C-CC------CCC-----------------HHHHHHH-----------Hhh
Confidence 999999999655443210 0 00 011 1222222 22
Q ss_pred --HHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEE
Q 011505 382 --TIV-ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIV 458 (484)
Q Consensus 382 --~~~-~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~ 458 (484)
..+ ..|..+++++++++|.+|+++++.++| .|.++|++....+.|.+.+++.+++.+.+.....+.
T Consensus 228 ~~~gD~~~a~~~l~~~~~~Lg~~i~nl~~~ldP-----------~IviGGgi~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 296 (366)
T 3mcp_A 228 IRPGNREAAIAAFEELGEMAGDALASAITLIDG-----------LIVIGGGLSGASKYILPVLLKEMNAQTGMMDGARFG 296 (366)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHCS-----------EEEEESGGGGGHHHHHHHHHHHHHHHTTCC------
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------EEEEEChhhhchHHHHHHHHHHHHHhcchhccCCce
Confidence 344 788899999999999999999999985 689999999999999999999999987665445666
Q ss_pred EE
Q 011505 459 IE 460 (484)
Q Consensus 459 i~ 460 (484)
++
T Consensus 297 i~ 298 (366)
T 3mcp_A 297 RL 298 (366)
T ss_dssp --
T ss_pred EE
Confidence 65
No 24
>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*
Probab=99.87 E-value=7.1e-22 Score=200.63 Aligned_cols=284 Identities=14% Similarity=0.172 Sum_probs=188.2
Q ss_pred eeeEEEEEeCCceEEEEEEEe-CCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 94 KGTYYALDLGGTNFRVLRVHL-GGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l-~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
.+++|++|+||||+|++++++ ++. +... .++|+.. .+.+ .+.|.+++++.+ .+...+
T Consensus 13 ~~~~lgiDiGGT~i~~~l~dl~~g~---i~~~----~~~~~~~----~~~~----~~~i~~~~~~~~-------~~i~gi 70 (332)
T 1sz2_A 13 TKYALVGDVGGTNARLALCDIASGE---ISQA----KTYSGLD----YPSL----EAVIRVYLEEHK-------VEVKDG 70 (332)
T ss_dssp -CEEEEEEEETTEEEEEEEETTTCC---EEEE----EEEEGGG----CSCH----HHHHHHHHHHSC-------CCCCEE
T ss_pred CCEEEEEEechhheEEEEEECCCCc---EEEE----EEecCCC----cCCH----HHHHHHHHHhcC-------CCccEE
Confidence 568999999999999999997 453 4432 2334321 2233 344555655432 135679
Q ss_pred eeeeeeeeeeeecCceEE--ECccHHHHHHHHHHhcCCC-ceEEEEEechHHHHhccccc--------------CCCcEE
Q 011505 173 GFTFSFPVMQTSINTGTL--VGRDVVEELSRAMAKQGLD-MSVSALVNDTVGTLAGGRYT--------------NKDVVA 235 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l--~G~dv~~~L~~al~r~gl~-v~v~alvNDtvatlla~~y~--------------~~~~~i 235 (484)
|+.++.|++........+ . .+ .+.|++.| ++| | .|.||+++..+++.+. +.++.+
T Consensus 71 gi~~pG~vd~~~~~~~nl~w~-~~-~~~l~~~~---~~p~V---~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~ 142 (332)
T 1sz2_A 71 CIAIACPITGDWVAMTNHTWA-FS-IAEMKKNL---GFSHL---EIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIA 142 (332)
T ss_dssp EEEESSCCCSSEECCSSSCCC-EE-HHHHHHHH---TCSEE---EEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEE
T ss_pred EEEEeCceeCCEEeeeCCCCc-CC-HHHHHHHh---CCCcE---EEEeCHhHHhccccccChhhheecCCCCCCCCCcEE
Confidence 999999997321100000 2 45 57888888 887 5 6999999999999863 347789
Q ss_pred EEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhh----hhccCCCCCcceeeeccccccH
Q 011505 236 AVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNA----LDAESLNPGEQIFEKMISGMYL 311 (484)
Q Consensus 236 glIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~----lD~~s~npg~q~fEkm~SG~YL 311 (484)
.+++|||++++++.+++ .++++.++|.|||.++.. | +.+.. +-..|+ .+|+|.++||..|
T Consensus 143 ~v~~GTGiG~giv~~g~--~G~~g~agE~GH~~v~~~-~----------~~~~~l~~~~c~~~g---~gclE~~~S~~~l 206 (332)
T 1sz2_A 143 VYGAGTGLGVAHLVHVD--KRWVSLPGEGGHVDFAPN-S----------EEEAIILEILRAEIG---HVSAERVLSGPGL 206 (332)
T ss_dssp EEEESSSEEEEEEEEET--TEEEEEECCGGGSBCCCC-S----------HHHHHHHHHHHHHSS---SCBGGGTSSHHHH
T ss_pred EEEcCccceEEEEecCC--CCeeeCCCCccccCcCCC-C----------hHHHHHHHHHHhccC---CcchhhhccHHHH
Confidence 99999999999999877 677777788999887643 1 10100 001233 4699999999999
Q ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHHH
Q 011505 312 GEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTI-VELCNIV 390 (484)
Q Consensus 312 gei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~-~~i~~~V 390 (484)
-+..+..... .. . .+..+ ....+++. ++.. +..|..+
T Consensus 207 ~~~~~~~~~~---~~--------~---~~~~~-----------------~~~~i~~~-----------a~~G~D~~A~~~ 244 (332)
T 1sz2_A 207 VNLYRAIVKA---DN--------R---LPENL-----------------KPKDITER-----------ALADSCTDCRRA 244 (332)
T ss_dssp HHHHHHHHHH---TT--------C---CCCCC-----------------CHHHHHHH-----------HHHTCCHHHHHH
T ss_pred HHHHHHHhhc---cC--------C---CccCC-----------------CHHHHHHH-----------HHcCCCHHHHHH
Confidence 7766543211 00 0 00001 12333333 5566 6899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceE-EEEeceeecc-chhHH-HHHHHHHHH--Hhccc-CCccEEEEEcCC
Q 011505 391 ATRGARLAAAGILGVLKKMGRDAAKDGDKQKTV-IAMDGGLYEH-YAEYS-KCLENTLEE--LLGEE-LFKNIVIEHSND 464 (484)
Q Consensus 391 ~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~-I~vdGsv~~~-~p~f~-~~l~~~l~~--l~~~~-~~~~v~i~~~~D 464 (484)
++++++++|.+|+++++.++| .. |.+.||+... .+.|. +.+++.+++ .+... ....+.+...+|
T Consensus 245 ~~~~~~~Lg~~i~~l~~~l~P----------~~gvvigGGi~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 314 (332)
T 1sz2_A 245 LSLFCVIMGRFGGNLALNLGT----------FGGVFIAGGIVPRFLEFFKASGFRAAFEDKGRFKEYVHDIPVYLIVHDN 314 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC----------TTEEEEECSSSGGGHHHHHHSSHHHHHHCCGGGHHHHTTCCEEEECCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCC----------CeEEEEEChhhhhHHHHhccHHHHHHHHhcCchhhHHhCceEEEEECCc
Confidence 999999999999999999998 34 8999999886 44444 356666653 12110 122455556889
Q ss_pred hhHHHHHHHHH
Q 011505 465 GSGIGAALLAA 475 (484)
Q Consensus 465 gs~iGAAl~Aa 475 (484)
++.+|||.++.
T Consensus 315 a~l~GAa~l~~ 325 (332)
T 1sz2_A 315 PGLLGSGAHLR 325 (332)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 99999998874
No 25
>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}
Probab=99.87 E-value=5e-22 Score=204.88 Aligned_cols=290 Identities=14% Similarity=0.045 Sum_probs=196.8
Q ss_pred eeeEEEEEeCCceEEEEEEEe----CCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 94 KGTYYALDLGGTNFRVLRVHL----GGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l----~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
.+++|++|+|||++|++++++ .|+ ++.+. ...|. .+.+++++.|.+.+.++..... .+.
T Consensus 28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~---il~~~---~~~~~----~~~~~~~~~i~~~i~~~~~~~~-------~~i 90 (373)
T 2q2r_A 28 APLTFVGDVGGTSARMGFVREGKNDSVH---ACVTR---YSMKR----KDITEIIEFFNEIIELMPASVM-------KRV 90 (373)
T ss_dssp SCEEEEEEECSSEEEEEEEEECGGGCEE---EEEEE---EECTT----CBGGGHHHHHHHHHHHSCHHHH-------TTE
T ss_pred CCeEEEEEEccccEEEEEEecccCCCcc---EEEEe---eecCC----CCHHHHHHHHHHHHHHHhhccc-------ccc
Confidence 357999999999999999999 553 55321 11343 2567888888888877654321 235
Q ss_pred eeeeeeeeeeeeeeecCceE--E---ECc-cHHHHHHHHHHhcCC-CceEEEEEechHHHHhc---------------cc
Q 011505 170 RELGFTFSFPVMQTSINTGT--L---VGR-DVVEELSRAMAKQGL-DMSVSALVNDTVGTLAG---------------GR 227 (484)
Q Consensus 170 ~~lGftFSfPv~q~~~~~G~--l---~G~-dv~~~L~~al~r~gl-~v~v~alvNDtvatlla---------------~~ 227 (484)
..+|+.++.|++. +.-. + .+. ++.+++++.+ ++ | +.|.||+++.+++ +.
T Consensus 91 ~gigi~~pG~vd~---g~v~~~~~~~~~~~~l~~~l~~~~---~~~p---v~v~NDa~aaalge~~l~~~~~~~~~~~E~ 161 (373)
T 2q2r_A 91 KAGVINVPGPVTG---GAVGGPFNNLKGIARLSDYPKALF---PPGH---SAILNDLEAGGFGVLAVSDAHVFSEYFGVM 161 (373)
T ss_dssp EEEEEEESSCEET---TTEECCCSSSBSCEEGGGSCTTTS---CTTS---EEEEEHHHHHHHHHHHHHHTTCHHHHEEEE
T ss_pred cEEEEEeeccccC---CEEeccCCCCCCcCCHHHHHHHhc---CCCC---EEEEccHhHHhccccccChhhhccccchhh
Confidence 6799999999984 1111 1 453 7777776655 66 6 4699999999999 55
Q ss_pred cc----------------CCCcEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhh
Q 011505 228 YT----------------NKDVVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALD 291 (484)
Q Consensus 228 y~----------------~~~~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD 291 (484)
+. +.++.+.+++|||++++++.+++.+.++++.++|.|||.++.+.. |. ....+-
T Consensus 162 ~~~~~~~~~~~~~~g~~~~~~~~~~v~~GTGiG~gii~~g~l~~G~~~~aGE~Gh~~~~~~~~-c~--------cg~~l~ 232 (373)
T 2q2r_A 162 WEGTQWRTCEQEPAGSVIGRGRCLVLAPGTGLGSSLIYYNPPMNQHIVVPLELGSQTLPMRKD-ID--------YIQTLH 232 (373)
T ss_dssp ECCTTTTTTCSSCTTSSCCSSCEEEEEESSSEEEEEEEECC---CEEEEEECGGGSBCCCSSC-HH--------HHHHHH
T ss_pred cccccccccccCCCcCcCCCCCEEEEEeCCceeEEEEecCcccCCCcccccccceeecCCCCC-cc--------hhHHHH
Confidence 53 347899999999999999999988888887788999999875422 32 111111
Q ss_pred ccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhC
Q 011505 292 AESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILE 371 (484)
Q Consensus 292 ~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~ 371 (484)
.... +..|+|.++||..|-++.+... . + . ++ ..+ ...+++.
T Consensus 233 ~~~~--~~g~lE~~~S~~~l~~~~~~~~----~-~-----~-~~------~~~-----------------~~~i~~~--- 273 (373)
T 2q2r_A 233 AELK--LFPNYENMVSGAGLEFHYRQVV----R-G-----S-RP------PCS-----------------AGEIAKL--- 273 (373)
T ss_dssp HHHT--SCCBHHHHSSHHHHHHHHHHHH----T-T-----S-SC------CCC-----------------HHHHHHH---
T ss_pred HHhh--ccccHhHhcCHHHHHHHHHHHh----c-C-----C-CC------CCC-----------------HHHHHHH---
Confidence 1111 2379999999999976554321 0 1 0 00 011 2223332
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHH--HHHHHHHHHh
Q 011505 372 ISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSK--CLENTLEELL 449 (484)
Q Consensus 372 ~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~--~l~~~l~~l~ 449 (484)
++..+..|..+++++++++|.+++++++.++| ..|.+.||...+.+.|.+ .+++.+++.+
T Consensus 274 --------a~~gD~~a~~~l~~~~~~L~~~i~~l~~~l~p----------~~IvlgGG~~~~~~~~~~~~~i~~~l~~~~ 335 (373)
T 2q2r_A 274 --------ASEGDANACKAMKKYHEYLMRVGSEASMALLP----------LTIVLVGDNIVNNAFFYRNPQNLKEMHHEA 335 (373)
T ss_dssp --------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------SEEEECSHHHHHTHHHHHSHHHHHHHHHHH
T ss_pred --------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CEEEEeCChHhCchhhhcchhHHHHHHHHH
Confidence 34455889999999999999999999999998 468898884444588988 8888888764
Q ss_pred cccC------CccEEEE---EcCChhHHHHHHHHH
Q 011505 450 GEEL------FKNIVIE---HSNDGSGIGAALLAA 475 (484)
Q Consensus 450 ~~~~------~~~v~i~---~~~Dgs~iGAAl~Aa 475 (484)
.+.. ...+.+. +.+|++.+|||.++.
T Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~~a~l~GAa~l~~ 370 (373)
T 2q2r_A 336 LNHEMERFGFQSRVSYLRQKKLLNLNLMGCYRCGL 370 (373)
T ss_dssp TCSGGGGGTSGGGCEEEEECSCCCHHHHHHHHHHH
T ss_pred hhcccchhhhhcCCcEEEEecCCchhHHHHHHHHH
Confidence 3321 1234443 478999999998863
No 26
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*
Probab=99.83 E-value=2e-19 Score=182.80 Aligned_cols=299 Identities=16% Similarity=0.174 Sum_probs=185.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec-CCCccccCcchhHHHHHHHHHHHHhhcccccccCCC-Cceeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI-PPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPG-RQRELG 173 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i-p~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~-~~~~lG 173 (484)
++|+||+|||++|++++++.|+ ++.+ ..+ |......+.+++++.|++.|.+++++.+.. .. +...+|
T Consensus 7 ~~lgiDiGgt~~~~~l~d~~g~---i~~~----~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~i~gig 75 (347)
T 2ch5_A 7 IYGGVEGGGTRSEVLLVSEDGK---ILAE----ADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVD----PLVPLRSLG 75 (347)
T ss_dssp EEEEEEECTTCEEEEEEETTSC---EEEE----EEECCCCHHHHCHHHHHHHHHHHHHHHHHHHTCC----TTCCBSEEE
T ss_pred EEEEEEcCccceEEEEEeCCCC---EEEE----EeCCCCCcccCCHHHHHHHHHHHHHHHHHhcCCC----cccceeEEE
Confidence 7899999999999999999875 5533 223 222211357889999999999999876532 12 457788
Q ss_pred eeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEccccc
Q 011505 174 FTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQA 253 (484)
Q Consensus 174 ftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~ 253 (484)
++.+.|++.. .+.++.+.|++.+...++| +.|.||+++++++ .| .+..+.+++|||++++++..
T Consensus 76 i~~pG~vd~~-------~~~~l~~~l~~~~~~~~~p---v~v~NDa~aaa~a-~~--~~~~v~v~~GTGig~~~v~~--- 139 (347)
T 2ch5_A 76 LSLSGGDQED-------AGRILIEELRDRFPYLSES---YLITTDAAGSIAT-AT--PDGGVVLISGTGSNCRLINP--- 139 (347)
T ss_dssp EEETTTTCHH-------HHHHHHHHHHHHCTTSBSC---EEEEEHHHHHHHH-HC--SSCEEEEEESSSEEEEEECT---
T ss_pred EeccCCCchH-------HHHHHHHHHHHhcCCCCce---EEEECcHHHHHHh-hC--CCCcEEEEEcCCceeEEEcC---
Confidence 8899988732 1345666666665111266 4699999999999 44 36789999999999987642
Q ss_pred ccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeee-ccccccHHHHHHHHHHHHHhccccCCCC
Q 011505 254 IPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEK-MISGMYLGEIVRRVLLRMAQEAAFFGDT 332 (484)
Q Consensus 254 i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEk-m~SG~YLgei~R~il~~~~~~~~lF~~~ 332 (484)
.|..+- |++. +|+|- ..||.|++........+..+ + .
T Consensus 140 ----------~G~~c~------------------------cG~~--G~l~~de~s~~~i~~~~~~~~~~~~d-g-----~ 177 (347)
T 2ch5_A 140 ----------DGSESG------------------------CGGW--GHMMGDEGSAYWIAHQAVKIVFDSID-N-----L 177 (347)
T ss_dssp ----------TSCEEE------------------------EECC--CTTTCCTTSHHHHHHHHHHHHHHHHH-T-----S
T ss_pred ----------CCCEEe------------------------cCCc--CcccCCCccHHHHHHHHHHHHHHHHh-C-----C
Confidence 122221 2233 36665 67888988654433222111 1 0
Q ss_pred CCCC-----C----CCCCccCh--hhhhhcccCCC-CChH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 333 VPPK-----L----EVPFALRT--PDMSAMHHDTS-SDLK-VVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAA 399 (484)
Q Consensus 333 ~~~~-----l----~~~~~l~t--~~ls~i~~d~~-~~~~-~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~A 399 (484)
.++. | ...+.+++ ..+..+..+.. .++. ....+++. ++..+..|..+++++++++|
T Consensus 178 ~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----------a~~gD~~a~~il~~~~~~La 246 (347)
T 2ch5_A 178 EAAPHDIGYVKQAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEG-----------AQQGDPLSRYIFRKAGEMLG 246 (347)
T ss_dssp SCCSSCCHHHHHHHHHHHTCSSHHHHHTTTTTTCCHHHHHTTHHHHHHH-----------HHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHhCCCCHHHHHHHHhcCCcHHHHHHHHHHHHHH-----------HHcCCHHHHHHHHHHHHHHH
Confidence 1100 0 00000000 00100100000 0000 02333332 45567899999999999999
Q ss_pred HHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHh--ccc-CCccEEEEEcCChhHHHHHHHHHH
Q 011505 400 AGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELL--GEE-LFKNIVIEHSNDGSGIGAALLAAS 476 (484)
Q Consensus 400 a~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~--~~~-~~~~v~i~~~~Dgs~iGAAl~Aa~ 476 (484)
.+|+++++.++|... .......|.++||+++..|.|.+.+++.+++.. +.. ....|.+....+++.+|||.++.-
T Consensus 247 ~~i~~l~~~~~p~~~--~~~~~~~IvlgGgv~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~a~~~GAa~la~~ 324 (347)
T 2ch5_A 247 RHIVAVLPEIDPVLF--QGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLMKLRHSSALGGASLGAR 324 (347)
T ss_dssp HHHHHHGGGSCGGGG--CSTTCEEEEEESGGGGGHHHHHHHHHHHHHHHC---CCCSCSEEEEEEESSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccc--ccCCCceEEEECCcccCcHHHHHHHHHHHHhhccccccccCCceEEEecCCChHHHHHHHHHH
Confidence 999999999998300 001123899999999999999999999998874 211 112444444445899999988753
No 27
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Probab=99.81 E-value=2e-20 Score=186.64 Aligned_cols=278 Identities=15% Similarity=0.108 Sum_probs=178.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|||++|+++++++|+ ++.+. +++.|. ....+.+++++.|.+.+.+++++. ...+|++
T Consensus 3 ~~lgiDiGgt~~~~~l~d~~g~---i~~~~--~~~~~~-~~~~~~~~~~~~i~~~i~~~~~~~----------~~~igi~ 66 (299)
T 2e2o_A 3 IIVGVDAGGTKTKAVAYDCEGN---FIGEG--SSGPGN-YHNVGLTRAIENIKEAVKIAAKGE----------ADVVGMG 66 (299)
T ss_dssp CEEEEEECSSCEEEEEECTTSC---EEEEE--EESCCC-HHHHCHHHHHHHHHHHHHHHHTSC----------CSEEEEE
T ss_pred EEEEEEeCCCcEEEEEEcCCCC---EEEEE--eCCCCC-cccCCHHHHHHHHHHHHHHHHhcC----------CCEEEEE
Confidence 5899999999999999999875 55432 233222 111356789999999998887532 2468888
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEccccccc
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVERAQAIP 255 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie~~~~i~ 255 (484)
++.| +. .+|. .++.+.|++ + ++| +.+.||++++++++.+ .++.+.+++|||+ +..+. +.
T Consensus 67 ~~G~-~~---~~~~---~~l~~~l~~-~---~~p---v~v~ND~~aaa~~e~~--~~~~v~l~~GTG~----i~~g~-~~ 125 (299)
T 2e2o_A 67 VAGL-DS---KFDW---ENFTPLASL-I---APK---VIIQHDGVIALFAETL--GEPGVVVIAGTGS----VVEGY-NG 125 (299)
T ss_dssp ETTC-CS---HHHH---HHHHHHHTT-S---SSE---EEEEEHHHHHHHHHHT--TSCEEEEEESSSE----EEEEE-CS
T ss_pred cCCC-Cc---hhHH---HHHHHHHHh-C---CCC---EEEeCcHHHHHhhccC--CCCeEEEEecCCE----EEEEE-cC
Confidence 8888 62 2232 244444444 4 455 5699999999999876 5678999999994 22233 44
Q ss_pred CcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCc----ceeeeccccccHHHHHHHHHHHHHhccccCCC
Q 011505 256 KWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGE----QIFEKMISGMYLGEIVRRVLLRMAQEAAFFGD 331 (484)
Q Consensus 256 k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~----q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~ 331 (484)
+.++.+++.|||.++. ...| .|++.|- +|+|.++|+..|-+.++..+. .
T Consensus 126 G~~~~aGE~Gh~~~~~-g~~c----------------~cG~~gl~~~~~~le~~~s~~~l~~~~~~~~~----------~ 178 (299)
T 2e2o_A 126 KEFLRVGGRGWLLSDD-GSAY----------------WVGRKALRKVLKMMDGLENKTILYNKVLKTIN----------V 178 (299)
T ss_dssp SCEEEEECSCTTTCCT-TSHH----------------HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHTT----------C
T ss_pred CeEEecCCcCCCcCCC-ccHH----------------HHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC----------C
Confidence 4444456666766652 1122 1333321 189999999999655443210 0
Q ss_pred CCCCCCCCCCccChhhhhhccc-C-CCCCh-HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 332 TVPPKLEVPFALRTPDMSAMHH-D-TSSDL-KVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKK 408 (484)
Q Consensus 332 ~~~~~l~~~~~l~t~~ls~i~~-d-~~~~~-~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~ 408 (484)
..+. ..+..+.. + +..++ .....+++. ++..+..|..+++++++++|.+|+++++.
T Consensus 179 ~~~~----------~l~~~~~~~~~~~~~~~~~~~~v~~~-----------a~~gd~~a~~il~~~~~~La~~i~~l~~~ 237 (299)
T 2e2o_A 179 KDLD----------ELVMWSYTSSCQIDLVASIAKAVDEA-----------ANEGDTVAMDILKQGAELLASQAVYLARK 237 (299)
T ss_dssp CSHH----------HHHHHHHHHTTCHHHHHTTHHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHH----------HHHHHHHcCCCCHHHHHHHHHHHHHH-----------HhcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 00000000 0 00000 012233332 45567899999999999999999999999
Q ss_pred hCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHH
Q 011505 409 MGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAAS 476 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~ 476 (484)
++| ..|.++||+... +.|.+.+++.+++. .|..-..++.+.+|||.++.-
T Consensus 238 l~p----------~~IvlgGgv~~~-~~~~~~l~~~~~~~-------~i~~~~~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 238 IGT----------NKVYLKGGMFRS-NIYHKFFTLYLEKE-------GIISDLGKRSPEIGAVILAYK 287 (299)
T ss_dssp HTC----------SEEEEESGGGGS-HHHHHHHHHHHHHT-------TCEEECCSCCHHHHHHHHHHH
T ss_pred cCC----------CEEEEECCccCc-HHHHHHHHHHCCCC-------eEeccCCCCChHHHHHHHHHH
Confidence 988 579999999988 99999999888754 222222558999999988753
No 28
>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10
Probab=99.81 E-value=4.4e-19 Score=174.57 Aligned_cols=241 Identities=19% Similarity=0.248 Sum_probs=172.0
Q ss_pred CCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 90 TGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 90 ~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
...+..+++++|+|||++|++++++.+. .++.. ...++.|. ..+.+++++.|.+.+.+++++.... ...
T Consensus 7 ~~~~~~~~lgidiggt~i~~~l~dl~~g--~i~~~-~~~~~~~~---~~~~~~~~~~i~~~i~~~~~~~~~~-----~~~ 75 (267)
T 1woq_A 7 KSHKNAPLIGIDIGGTGIKGGIVDLKKG--KLLGE-RFRVPTPQ---PATPESVAEAVALVVAELSARPEAP-----AAG 75 (267)
T ss_dssp ----CCCEEEEEECSSEEEEEEEETTTT--EEEEE-EEEEECCS---SCCHHHHHHHHHHHHHHHHTSTTCC-----CTT
T ss_pred hcCCCCEEEEEEECCCEEEEEEEECCCC--eEEEE-EEecCCCc---cCCHHHHHHHHHHHHHHHHHhcccc-----Ccc
Confidence 3345567999999999999999999732 24421 11233332 1356789999999999988653210 123
Q ss_pred eeeeeeeeeeeeeeecCceEE----------ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc----CCC-cE
Q 011505 170 RELGFTFSFPVMQTSINTGTL----------VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT----NKD-VV 234 (484)
Q Consensus 170 ~~lGftFSfPv~q~~~~~G~l----------~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~----~~~-~~ 234 (484)
..+|+.++.|++ +|++ .+.|+.+.|++.+ ++|| .+.||++++++++.+. +.+ ..
T Consensus 76 ~~igi~~pG~v~-----~g~v~~~~~l~~~w~~~~l~~~l~~~~---~~pV---~v~NDanaaalaE~~~g~~~~~~~~~ 144 (267)
T 1woq_A 76 SPVGVTFPGIIQ-----HGVVHSAANVDKSWLNTDIDALLTARL---GRPV---EVINDADAAGLAEARYGAGAGVKGTV 144 (267)
T ss_dssp CCEEEEESSCEE-----TTEECCCTTSCGGGTTCBHHHHHHHHH---TSCE---EEEEHHHHHHHHHHHHSTTTTCCSEE
T ss_pred ceEEEEccceEc-----CCEEEeCCCCCCCCCCCCHHHHHHHHH---CCCE---EEeehhHHHHHHHHHhCCCCCCCCcE
Confidence 469999999997 2333 4578999999999 8884 6999999999999874 233 57
Q ss_pred EEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHH
Q 011505 235 AAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEI 314 (484)
Q Consensus 235 iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei 314 (484)
+.+++|||++++++.+++.+.+ +|.|||.++ | .++|.++|+..|-+
T Consensus 145 ~~l~~GtGIG~giv~~G~l~~G-----gEiGh~~v~--------------------------~--~~lE~~~S~~~l~~- 190 (267)
T 1woq_A 145 LVITLGTGIGSAFIFDGKLVPN-----AELGHLEID--------------------------G--HDAETKASAVARER- 190 (267)
T ss_dssp EEEEESSSEEEEEEETTEEETT-----CCGGGCEET--------------------------T--EEHHHHHSHHHHHH-
T ss_pred EEEEECcceEEEEEECCEEccC-----ceeeeEEec--------------------------C--ccHHHHhCHHHHhh-
Confidence 8999999999999999877655 466777764 1 25899999876521
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHH
Q 011505 315 VRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRG 394 (484)
Q Consensus 315 ~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~Ra 394 (484)
. . ..++++
T Consensus 191 ----------~----------------------------~----------------------------------~~~~~~ 198 (267)
T 1woq_A 191 ----------D----------------------------G----------------------------------LSWDEY 198 (267)
T ss_dssp ----------T----------------------------T----------------------------------CCHHHH
T ss_pred ----------c----------------------------c----------------------------------hhHHHH
Confidence 0 0 013456
Q ss_pred HHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEE-EcCChhHHHHHHH
Q 011505 395 ARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIE-HSNDGSGIGAALL 473 (484)
Q Consensus 395 A~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~-~~~Dgs~iGAAl~ 473 (484)
++++|.+|+++++.++| ..|.++|++....+.|.+.++ . ...|.+- +.+|++.+|||.+
T Consensus 199 ~~~l~~~l~~l~~~ldP----------~~IvlgG~i~~~~~~~~~~~~--------~--~~~i~~s~l~~~a~~~GAa~l 258 (267)
T 1woq_A 199 SVLLQRYFSHVEFLFSP----------ELFIVGGGISKRADEYLPNLR--------L--RTPIVPAVLRNEAGIVGAAIE 258 (267)
T ss_dssp HHHHHHHHHHHHHHHCC----------SEEEEESGGGGGGGGTGGGCC--------C--SSCEEECSCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------CEEEEeChhhcccHHHHHhhc--------c--CceEEECCcCCcHHHHHHHHH
Confidence 78889999999999998 689999999998888876654 1 1233332 3689999999998
Q ss_pred HHHhc
Q 011505 474 AASHS 478 (484)
Q Consensus 474 Aa~~~ 478 (484)
+....
T Consensus 259 ~~~~~ 263 (267)
T 1woq_A 259 IALQH 263 (267)
T ss_dssp HHHHC
T ss_pred HHhcc
Confidence 86544
No 29
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*
Probab=99.78 E-value=8e-19 Score=181.72 Aligned_cols=282 Identities=12% Similarity=0.103 Sum_probs=190.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHH---HHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYI---AAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~I---a~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
++|+||+|||++|+++++++ +++.+. +.+.+.... .+.+++++.+ .+.|.+++++.+.. ..+...+
T Consensus 3 ~vlgidiGgt~ik~al~d~~----~il~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~~i~gI 71 (381)
T 1saz_A 3 RILTINPGSTSTKLSIFEDE----RMVKMQ--NFSHSPDEL-GRFQKILDQLEFREKIARQFVEETGYS----LSSFSAF 71 (381)
T ss_dssp EEEEEEECSSEEEEEEEETT----EEEEEE--EEECCHHHH-HTCSSGGGGHHHHHHHHHHHHHTTTCC----GGGCSEE
T ss_pred eEEEEECCccceeEEEEecc----hheeee--ecccCcccc-cchhhHHHHHHHHHHHHHHHHHHcCCC----ccCceEE
Confidence 58999999999999999963 255332 233322100 0234556666 88888888765422 1234556
Q ss_pred eeeeeeeeeeeecCceEE----------------------ECccHHHHHHHHHHhcCCCceEEEEEechH---------H
Q 011505 173 GFTFSFPVMQTSINTGTL----------------------VGRDVVEELSRAMAKQGLDMSVSALVNDTV---------G 221 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l----------------------~G~dv~~~L~~al~r~gl~v~v~alvNDtv---------a 221 (484)
+.+++|++ ..+|.+ .+.++.+.|++.+ ++|+ .+.||++ +
T Consensus 72 -i~~pG~vd---~~~G~~~~i~~~~~~~l~~~~~~~~~~nl~~~l~~~l~~~~---~~Pv---~v~NDan~~~~~~~a~a 141 (381)
T 1saz_A 72 -VSRGGLLD---PIPGGVYLVDGLMIKTLKSGKNGEHASNLGAIIAHRFSSET---GVPA---YVVDPVVVDEMEDVARV 141 (381)
T ss_dssp -EEECCSCS---CBCSSEEECCHHHHHHHHHTTTCCCTTHHHHHHHHHHHHHH---CCCE---EEESCTTBCCCCGGGTB
T ss_pred -EecCCCCC---CCCCceEecCHHHHHHHHhcccccChhhhhHHHHHHHHHhc---CCCE---EEeCCCccccCcHHHHH
Confidence 77888887 333322 1445666677777 8885 5999999 8
Q ss_pred HHh-----------------cc-ccc----CCC--cEEEEEEccCcceEEEcccccccCcCCCCCCCCcEEEeCCCCCCC
Q 011505 222 TLA-----------------GG-RYT----NKD--VVAAVILGTGSNAAYVERAQAIPKWHGVPSKSGEMVINMEWGDFR 277 (484)
Q Consensus 222 tll-----------------a~-~y~----~~~--~~iglIlGTG~Na~yie~~~~i~k~~~~~~~~g~miIN~EwG~f~ 277 (484)
+.+ ++ .+. +.+ +.+.+.+|||+++|.+.+++.+.+..+.++| |||.++.. |.|.
T Consensus 142 aalp~~~r~~gfhgls~~~~aE~~~~g~~~~~~~~~~v~~~lGtGiG~g~i~~G~~~~G~~g~agE-Gh~~~~~~-g~c~ 219 (381)
T 1saz_A 142 SGHPNYQRKSIFHALNQKTVAKEVARMMNKRYEEMNLVVAHMGGGISIAAHRKGRVIDVNNALDGD-GPFTPERS-GTLP 219 (381)
T ss_dssp CSSTTCBCCCCSCHHHHHHHHHHHHHHTTCCGGGCEEEEEEESSSEEEEEEETTEEEEECCGGGTC-SSCCSSCC-CSCC
T ss_pred cCCcchhhhcccccccHHHHHHHHHHhcCCCCccCCEEEEEeCCCcEEEEEECCEEEEecCCCCCC-cceeeccC-CCCC
Confidence 878 77 442 334 8999999999999999999999888877788 99998754 4342
Q ss_pred CCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCCCCCCCCCCCCCccChhhhhhcccCCCC
Q 011505 278 SSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDTVPPKLEVPFALRTPDMSAMHHDTSS 357 (484)
Q Consensus 278 ~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~ 357 (484)
|++--..|+|.++|+..|-+.++. .. .+. .++ . ..
T Consensus 220 ----------------cg~l~~gc~e~~~S~~~l~~~~~~-------~~---------------g~~--~~~---~--~~ 254 (381)
T 1saz_A 220 ----------------LTQLVDLCFSGKFTYEEMKKRIVG-------NG---------------GLV--AYL---G--TS 254 (381)
T ss_dssp ----------------HHHHHHHHTSSCCCTTGGGSTTTT-------SC---------------THH--HHH---S--CC
T ss_pred ----------------CcHHHHHHHHhCCCHHHHHHHHHh-------cc---------------Ccc--ccc---c--CC
Confidence 333112689999999887332211 00 000 000 0 01
Q ss_pred ChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCcCCCCCcceEEEEeceeeccch
Q 011505 358 DLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKM--GRDAAKDGDKQKTVIAMDGGLYEHYA 435 (484)
Q Consensus 358 ~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~--~~~~~~~~~~~~~~I~vdGsv~~~~p 435 (484)
+ .+.+++. ++..+..|..+++++++.+|.+|++++..+ +| ..|.++||+.+..+
T Consensus 255 ~---~~~i~~~-----------a~~gd~~a~~~l~~~~~~la~~i~~l~~~l~~~p----------~~IvlgGgi~~~~~ 310 (381)
T 1saz_A 255 D---AREVVRR-----------IKQGDEWAKRVYRAMAYQIAKWIGKMAAVLKGEV----------DFIVLTGGLAHEKE 310 (381)
T ss_dssp C---HHHHHHH-----------HHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------SEEEEEEGGGGCTT
T ss_pred C---HHHHHHH-----------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CEEEEeCcCccChH
Confidence 1 2233332 334457889999999999999999999999 66 68999999999888
Q ss_pred hHHHHHHHHHHHHhcccCCccEEEEEcC---ChhHHHHHHHHH
Q 011505 436 EYSKCLENTLEELLGEELFKNIVIEHSN---DGSGIGAALLAA 475 (484)
Q Consensus 436 ~f~~~l~~~l~~l~~~~~~~~v~i~~~~---Dgs~iGAAl~Aa 475 (484)
.|++.+++.++.+. .+.+++++ |++.+|||.++.
T Consensus 311 ~l~~~i~~~l~~~~------~~~i~~~~~~~~a~~~GAa~l~~ 347 (381)
T 1saz_A 311 FLVPWITKRVSFIA------PVLVFPGSNEEKALALSALRVLR 347 (381)
T ss_dssp THHHHHHHHHTTTS------CEEEEEBCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhc------CeEEEecCcchhHHHHHHHHHHc
Confidence 79999999887642 45666543 468899988763
No 30
>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}
Probab=99.66 E-value=5.8e-17 Score=156.10 Aligned_cols=199 Identities=17% Similarity=0.185 Sum_probs=140.0
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+.++++++|+|||++| +++++++ +. .+.+.|. ..+.+++.+.|+ +++++. +...+
T Consensus 4 ~~~~~lgiDIGGT~i~--~~d~~g~---~~----~~~~t~~---~~~~~~~~~~i~----~~i~~~---------~i~gi 58 (226)
T 3lm2_A 4 EDQTVLAIDIGGSHVK--IGLSTDG---EE----RKVESGK---TMTGPEMVAAVT----AMAKDM---------TYDVI 58 (226)
T ss_dssp GGCCEEEEEECSSEEE--EEETTTC---CE----EEEECCT---TCCHHHHHHHHH----HHTTTC---------CCSEE
T ss_pred cCCEEEEEEECCCEEE--EEECCCC---EE----EEEECCC---CCCHHHHHHHHH----HHHHhC---------CCCEE
Confidence 3468999999999999 3666653 32 1133332 224455555554 444432 24679
Q ss_pred eeeeeeeeeeeecCc-e-----EEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceE
Q 011505 173 GFTFSFPVMQTSINT-G-----TLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAA 246 (484)
Q Consensus 173 GftFSfPv~q~~~~~-G-----~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~ 246 (484)
|++++.|++....-. . -+.+.|+ ++.+ ++|| .+.||+++..+++.+. .+.+.+++|||++++
T Consensus 59 gi~~pG~Vd~~~~~~~~~nl~~~w~~~~l----~~~~---~~pv---~v~NDanaaalge~~~--~~~~~l~~GtGiG~g 126 (226)
T 3lm2_A 59 AMGYPGPVVHNKPLREPVNLGEGWVGYDY----EGAF---GRPV---RIVNDALMQAIGSYNG--GRMLFLGLGTGLGAA 126 (226)
T ss_dssp EEEESSCEETTEECSCCTTSCSCCTTCCH----HHHH---TSCE---EEEEHHHHHHHHHCCS--SEEEEEEESSSEEEE
T ss_pred EEEEEeEEECCeEEEECCcCCccccCCch----HHhc---CCeE---EEEEHHHHHHHHHhhc--CcEEEEEeCCceEEE
Confidence 999999998432100 0 0134455 3455 8884 6999999999999876 689999999999999
Q ss_pred EEcccccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCCcceeeeccccccHHHHHHHHHHHHHhcc
Q 011505 247 YVERAQAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEA 326 (484)
Q Consensus 247 yie~~~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~ 326 (484)
++.+++.++ +|.|||.++.. +|+|.++|+..|-+ +.
T Consensus 127 ii~~G~l~~------GEiGH~~v~~~---------------------------gclE~~~s~~al~~---~~-------- 162 (226)
T 3lm2_A 127 MIVENVAQP------MEIAHLPYRKG---------------------------KTYEHYVSEAYREK---KG-------- 162 (226)
T ss_dssp EEETTEEEE------ECCTTSEEETT---------------------------EEHHHHTCHHHHHH---HC--------
T ss_pred EEECCEEee------eeeeeEEecCC---------------------------CcHHHHhCHHHHHH---HH--------
Confidence 999876654 46667766521 59999999988722 10
Q ss_pred ccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 327 AFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVL 406 (484)
Q Consensus 327 ~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii 406 (484)
-+++++++|.+|++++
T Consensus 163 ----------------------------------------------------------------~~~~~~~L~~~la~l~ 178 (226)
T 3lm2_A 163 ----------------------------------------------------------------NAKWQKRVQDVVERLS 178 (226)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------HHHHHHHHHHHHHHHH
Confidence 0356788999999999
Q ss_pred HHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 407 KKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 407 ~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
+.++| ..|.++|++.+..+.|.+.+++.++
T Consensus 179 ~~~dP----------~~IVlGG~~~~~~~~~~~~i~~~~~ 208 (226)
T 3lm2_A 179 AALEP----------DEVVIGGGNVERLENLPPKCRRGDN 208 (226)
T ss_dssp HHHCC----------SEEEEESGGGGGCCCCCTTEEECCT
T ss_pred HHHCC----------CEEEEeChhhhhhhHHHHHHHHHHH
Confidence 99999 6899999999999988777665443
No 31
>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5
Probab=99.65 E-value=2.7e-16 Score=156.65 Aligned_cols=265 Identities=13% Similarity=0.055 Sum_probs=142.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
++|+||+|||++|+++++ +|+ ++.+ ...|+ +....+.+++++.|.+.+.+.++. .+...+|+
T Consensus 1 ~~lgiDiGGT~i~~~l~d-~g~---il~~----~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---------~~i~~igi 63 (291)
T 1zxo_A 1 MILIADSGSTKTDWCVVL-NGA---VIKR----LGTKGINPFFQSEEEIQQKLTASLLPQLPE---------GKFNAVYF 63 (291)
T ss_dssp ---CEECCTTCEEEEEEC-SSS---EEEE----EEECCCCTTTSCSTTTTTTTTC----------------------CEE
T ss_pred CEEEEEeccccEEEEEEc-CCe---EEEE----EECCCCCcccCCHHHHHHHHHHHHHHhcCc---------ccccEEEE
Confidence 378999999999999999 774 5533 22332 221224566777777777665422 12456788
Q ss_pred eeeeeeeeeecCceEEECccHHHHHHHHHHhcC--CCceEEEEEechHHHHhcccccCCCcEEEEEEccCcc-eEEEccc
Q 011505 175 TFSFPVMQTSINTGTLVGRDVVEELSRAMAKQG--LDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSN-AAYVERA 251 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~g--l~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~N-a~yie~~ 251 (484)
..+.++ . .. +.++.+.|++.+ + .| +.|.||++++++++. +.+..+.+|+|||++ ++++.++
T Consensus 64 g~pG~~-~---~~----~~~l~~~l~~~~---~~~~p---v~v~NDa~~aalge~--g~~~~v~v~~GTGi~g~gi~~~G 127 (291)
T 1zxo_A 64 YGAGCT-P---EK----APVLRRAIADSL---PVIGN---IKANSDMLAAAHGLC--GQKAGIACILGTGSNSCFYNGKE 127 (291)
T ss_dssp ECTTCC-T---TT----THHHHHHHHHHS---CCCSC---CEEECSHHHHHHHTT--TTSCBEEEEESSSEEEEEECSSS
T ss_pred EcCCCC-H---HH----HHHHHHHHHHhc---CCCce---EEEECcHHHHHHhhc--CCCCcEEEEeCCChheEEECCCC
Confidence 888775 1 12 246777777766 6 36 469999999999985 567789999999996 5565553
Q ss_pred ccccCcCCCCCCCCcEEEeCCCCCC-CCCCCCCchhhhhhhccCCCCC-cceeeeccccccHHHHHHHHHH----HHHhc
Q 011505 252 QAIPKWHGVPSKSGEMVINMEWGDF-RSSHLSLSEYDNALDAESLNPG-EQIFEKMISGMYLGEIVRRVLL----RMAQE 325 (484)
Q Consensus 252 ~~i~k~~~~~~~~g~miIN~EwG~f-~~~~lp~T~~D~~lD~~s~npg-~q~fEkm~SG~YLgei~R~il~----~~~~~ 325 (484)
+. .---|||.. ++.+. .+. +++.+ ..+++... +..|-+.++..+. ++.+
T Consensus 128 ~~--------------~~aGe~Gh~~~d~g~---~~~------~G~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~l~~- 182 (291)
T 1zxo_A 128 IV--------------SNISPLGFILGDEGS---GAV------LGKLLVGDILKNQL-PATLKEEFLKQFDLTPPEIID- 182 (291)
T ss_dssp EE--------------EECCCCCTTTSCCSS---HHH------HHHHHHHHGGGTCS-CSHHHHHHHHHHTCCHHHHGG-
T ss_pred cE--------------EEeCCCccccCCCch---HHH------HHHHHHHHHHHccC-CChHHHHHHHHhCCCHHHHHH-
Confidence 32 222366533 21100 000 11100 01122211 3444222222110 0000
Q ss_pred cccCCCCCCCCCCCCCccChhhhhhcccCCCCChHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 326 AAFFGDTVPPKLEVPFALRTPDMSAMHHDTSSDLKVVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGV 405 (484)
Q Consensus 326 ~~lF~~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaai 405 (484)
.+.....|. ....-.. ..+++ +..+++|..+++++++.+|.+| .
T Consensus 183 -~~~~~~~~~---~~ia~~a-----------------~~v~~-------------~~GD~~A~~i~~~~~~~La~~i--~ 226 (291)
T 1zxo_A 183 -RVYRQPFPN---RFLASLS-----------------PFIAQ-------------HLEEPAIRQLVMNSFIAFFRRN--V 226 (291)
T ss_dssp -GTTTSSCST---TTSSTTT-----------------HHHHT-------------TTTSTTTTHHHHHHHHHHHTTT--G
T ss_pred -HHhcCCCCH---HHHHHhh-----------------HHHHH-------------hCCCHHHHHHHHHHHHHHHHHH--h
Confidence 000000000 0000001 11111 1234778899999999999999 3
Q ss_pred HHHh-CCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHH
Q 011505 406 LKKM-GRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLA 474 (484)
Q Consensus 406 i~~~-~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~A 474 (484)
++.+ +| ..|.++||+.+. |.+.+++.+++ + .+.+...++++.+|||.+|
T Consensus 227 ~~~~~~p----------~~vvlgGGv~~~---l~~~l~~~l~~---~----~~~i~~~~~a~~~GAa~la 276 (291)
T 1zxo_A 227 MQYDYKQ----------YPVHFIGSIAYC---YKEILQDAARQ---T----GIQIGKILQSPMEGLIQYH 276 (291)
T ss_dssp GGSCTTT----------SCEEECSHHHHH---THHHHHHHTTT---T----TCCEEEECSCTHHHHHTTS
T ss_pred cccCCCC----------ceEEEECcHHHH---HHHHHHHHHhc---C----CcEEeecCCCHHHHHHHHH
Confidence 4433 44 679999999876 78888887765 2 2445567899999999876
No 32
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Probab=99.64 E-value=1.1e-15 Score=152.28 Aligned_cols=272 Identities=14% Similarity=0.052 Sum_probs=151.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec-CCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI-PPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGF 174 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i-p~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGf 174 (484)
.+|+||+|||++|+++++ +|+ ++.+ ... |.+....+.+++++.|.+.+.+.+... ..+...+|+
T Consensus 1 ~~lgiDiGGT~~~~~l~d-~g~---il~~----~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-------~~~i~~igi 65 (291)
T 1zbs_A 1 MILIGDSGSTKTDWCIAK-EGK---SLGR----FQTSGINPFQQDRNEIDTALRSEVLPAIGQK-------ASSIRAVYF 65 (291)
T ss_dssp CEEEEEECSSEEEEEEEE-TTE---EEEE----EEEECCCTTTSCHHHHHHHHTTTTHHHHTTS-------TTTCCEEEE
T ss_pred CEEEEEeCccceEEEEEe-CCe---EEEE----EECCCCCcccCCHHHHHHHHHHHHHHHhCCC-------cccccEEEE
Confidence 379999999999999999 764 5533 223 222212256778888888777654211 123456888
Q ss_pred eeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEE-ccccc
Q 011505 175 TFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYV-ERAQA 253 (484)
Q Consensus 175 tFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yi-e~~~~ 253 (484)
..+.|+ ... +.++.+.|++.+ +.. ..+.|.||++++++++. +.+..+.+|+|||++++.+ .+++.
T Consensus 66 g~pG~~----~~~----~~~l~~~l~~~~---~~~-~pv~v~NDa~~aa~ge~--g~~~~v~v~~GTGigg~~i~~~G~~ 131 (291)
T 1zbs_A 66 YGAGCT----PAK----APMLNEALDSML---PHC-DRIEVAGDMLGAARALC--GDSEGIACILGTGSNSCLFDGREIK 131 (291)
T ss_dssp EETTCC----TTT----HHHHHHHHHHHS---TTC-SEEEEECHHHHHHHHHT--TTSCEEEEEESSSEEEEEECSSSEE
T ss_pred ECCCCC----hHH----HHHHHHHHHHhc---CCC-CcEEEeCcHHHHHHhhc--CCCCcEEEEecCChheEEECCCCcE
Confidence 888876 122 246667777666 530 12679999999999984 5678899999999985554 44332
Q ss_pred ccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhccCCCCC-cceeeeccccccHHHHHHHHHHHHHhccccCCCC
Q 011505 254 IPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDAESLNPG-EQIFEKMISGMYLGEIVRRVLLRMAQEAAFFGDT 332 (484)
Q Consensus 254 i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~~s~npg-~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~~~ 332 (484)
. .+++.|||+.+. .+.|+ +++.+ ..+++... +..|-+.++. . |+
T Consensus 132 ~-----~aGe~G~~~~d~-g~~~~----------------~G~~~~~~~~~~~~-~~~l~~~~~~---~-------~~-- 176 (291)
T 1zbs_A 132 A-----NVSPLGYILGDE-GSGAV----------------LGRLFIGSLLKGQM-PEGLCEAFLQ---E-------YG-- 176 (291)
T ss_dssp E-----ECCCCHHHHCCT-TSHHH----------------HHHHHHHHHHTTCS-CTTHHHHHHH---H-------TT--
T ss_pred E-----EeCCCccccCCC-chHHH----------------HHHHHHHHHHHccC-CChHHHHHHH---H-------hC--
Confidence 1 122333333321 11110 00000 00111111 2222111111 0 00
Q ss_pred CCCCCCCCCccChhhh-hhcccCCCC--ChH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011505 333 VPPKLEVPFALRTPDM-SAMHHDTSS--DLK-VVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKK 408 (484)
Q Consensus 333 ~~~~l~~~~~l~t~~l-s~i~~d~~~--~~~-~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~ 408 (484)
.+...+ ..+..+..+ ++. ....+++ +..+.+|..+++++++.+|.+| .++.
T Consensus 177 ----------~~~~~l~~~~~~~~~~~~~ia~~a~~v~~-------------~~GD~~A~~i~~~~~~~La~~i--~~~~ 231 (291)
T 1zbs_A 177 ----------LTSADIIESVYRKPFPNRFLAGFSPFIAQ-------------HLDIPAVYSLVQNSFDDFLVRN--VLRY 231 (291)
T ss_dssp ----------CCHHHHHHHHHHSSCHHHHHHTTHHHHHT-------------TTTSHHHHHHHHHHHHHHHHHH--TGGG
T ss_pred ----------cCHHHHHHHHHcCCCCHHHHHHhhHHHHH-------------hCCCHHHHHHHHHHHHHHHHHH--hccc
Confidence 000000 000000000 000 0111111 2345899999999999999999 4444
Q ss_pred h-CCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHH
Q 011505 409 M-GRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAAS 476 (484)
Q Consensus 409 ~-~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~ 476 (484)
+ +| ..|.++||+.+. |.+.+++.+++.. +++....++..+||+.+|.-
T Consensus 232 ~~~p----------~~vvlgGGv~~~---~~~~l~~~l~~~~-------~~i~~~~~a~~~GA~~la~~ 280 (291)
T 1zbs_A 232 NRPD----------LPLHFIGSVAFH---YREVLSSVIKKRG-------LTLGSVLQSPMEGLIQYHHN 280 (291)
T ss_dssp CCTT----------SCEEEESHHHHH---THHHHHHHHHHTT-------CCEEEEESCSHHHHHHHHHH
T ss_pred CCCC----------ceEEEECchHHh---hHHHHHHHHHHcC-------CeecccCcCHHHHHHHHHHh
Confidence 4 55 679999999876 5677777776543 12344559999999999864
No 33
>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5
Probab=99.63 E-value=7.3e-15 Score=147.04 Aligned_cols=274 Identities=16% Similarity=0.077 Sum_probs=153.6
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec-CCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCc--eee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI-PPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ--REL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i-p~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~--~~l 172 (484)
++|+||+|||++|+++++++|+ ++.+. .. |... ..+.+++++.+++.|.+++++.+.. ..+. ..+
T Consensus 12 ~~lGiDiGgT~i~~~l~d~~G~---il~~~----~~~~~~~-~~~~~~~~~~l~~~i~~~l~~~~~~----~~~i~~~~i 79 (305)
T 1zc6_A 12 YLIGVDGGGTGTRIRLHASDGT---PLAMA----EGGASAL-SQGIAKSWQAVLSTLEAAFQQAGLP----AAPASACAI 79 (305)
T ss_dssp EEEEEEECSSCEEEEEEETTCC---EEEEE----EESCCCG-GGCHHHHHHHHHHHHHHHHHHTTCC----CCCGGGEEE
T ss_pred EEEEEEcCccceEEEEEcCCCC---EEEEE----eCCCCCc-ccCHHHHHHHHHHHHHHHHHhcCCC----hhhhccceE
Confidence 7899999999999999999875 55332 22 2222 2356889999999999999875432 1222 568
Q ss_pred eeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEEc-cc
Q 011505 173 GFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYVE-RA 251 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yie-~~ 251 (484)
|++++.|++.. .+ ..|++.|.+ ++| +.|.||+++.++++. ..+..+.+++|||++++.+. ++
T Consensus 80 gig~pG~v~~~---~~--------~~l~~~~~~-~~p---v~v~NDa~aaa~ge~--~~~~~v~v~~GTGigg~~i~~~G 142 (305)
T 1zc6_A 80 GLGLSGVHNRQ---WA--------GEFESQAPG-FAR---LSLATDGYTTLLGAH--GGQPGIIVALGTGSIGEALYPDG 142 (305)
T ss_dssp EEEESCCCTTS---HH--------HHHHHTCCC-CSE---EEEECHHHHHHHHHT--TTSSEEEEEESSSEEEEEECTTS
T ss_pred EEEecCCCchH---HH--------HHHHHhCCC-Cce---EEEECCHHHHHHhhc--CCCCeEEEEecCCeEEEEEeCCC
Confidence 88999998732 22 113332211 344 579999999999873 34678899999999655554 33
Q ss_pred ccccCcCCCCCCCCcEEEeCCCCCCCCCCCCCchhhhhhhc-cCCCCCcceeeeccccccHHHHHHHHHHHHHhccccCC
Q 011505 252 QAIPKWHGVPSKSGEMVINMEWGDFRSSHLSLSEYDNALDA-ESLNPGEQIFEKMISGMYLGEIVRRVLLRMAQEAAFFG 330 (484)
Q Consensus 252 ~~i~k~~~~~~~~g~miIN~EwG~f~~~~lp~T~~D~~lD~-~s~npg~q~fEkm~SG~YLgei~R~il~~~~~~~~lF~ 330 (484)
+. ..+++.|||.++.. +.++..+...-+.=...|. .|..+..+++|...+ ...-.+++.+
T Consensus 143 ~~-----~~aGe~Gh~~~d~g-~~~~iG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~------------ 203 (305)
T 1zc6_A 143 SH-----REAGGWGYPSGDEA-SGAWLGQRAAQLTQMALDGRHSHSPLTRAVLDFVG-GDWQAMMAWN------------ 203 (305)
T ss_dssp CE-----EEESCCCTTTSCTT-SHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHT-SSHHHHHHHH------------
T ss_pred cE-----EEecCcccccCCCc-hHHHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHC-cCHHHHHHHH------------
Confidence 21 11123333333211 0000000000000000010 011111122222222 0011111110
Q ss_pred CCCCCCCCCCCccChhhhhhcccCCCCChH-HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011505 331 DTVPPKLEVPFALRTPDMSAMHHDTSSDLK-VVETKLKDILEISSTSLSMRKTIVELCNIVATRGARLAAAGILGVLKKM 409 (484)
Q Consensus 331 ~~~~~~l~~~~~l~t~~ls~i~~d~~~~~~-~~~~il~~~~~~~~~~~~d~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~ 409 (484)
.......+. ....+++. + ..+.+|..+++++++++|.+|+++++.
T Consensus 204 ---------------------~~~~~~~~~~~~~~v~~~-----------a-~GD~~A~~i~~~~~~~L~~~l~~l~~~- 249 (305)
T 1zc6_A 204 ---------------------GRATPAQFARLAPLVLSA-----------A-RVDPEADALLRQAGEDAWAIARALDPQ- 249 (305)
T ss_dssp ---------------------HTCCHHHHHTTHHHHHHH-----------T-TTCHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred ---------------------hccCHHHHHHHHHHHHHH-----------c-CCCHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 000000000 12233332 3 456899999999999999999999986
Q ss_pred CCCCcCCCCCcceEEEEeceeecc-chhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHH
Q 011505 410 GRDAAKDGDKQKTVIAMDGGLYEH-YAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAA 475 (484)
Q Consensus 410 ~~~~~~~~~~~~~~I~vdGsv~~~-~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa 475 (484)
+| ..|.++||+... .|.|.+.+++.+ ...++.+.+|||++|.
T Consensus 250 ~p----------~~VvlgGgv~~~~~~~l~~~l~~~i--------------~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 250 DE----------LPVALCGGLGQALRDWLPPGFRQRL--------------VAPQGDSAQGALLLLQ 292 (305)
T ss_dssp CC----------SCEEEESHHHHHTGGGSCHHHHHHC--------------CCCSSCHHHHHHHHTC
T ss_pred CC----------CeEEEECCchHhHHHHHHHHHHhhc--------------cCCCCCHHHHHHHHHh
Confidence 66 579999999864 566777766531 1246888999998874
No 34
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}
Probab=98.42 E-value=4.3e-05 Score=81.53 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=55.9
Q ss_pred CceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCC
Q 011505 92 DEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGR 168 (484)
Q Consensus 92 ~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~ 168 (484)
....++|+||+|+|++|+++++.+|+ ++...+..++. | ......+++++++.+.+++++.+++.+... .+
T Consensus 4 ~~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~ 76 (508)
T 3ifr_A 4 AQGRQVIGLDIGTTSTIAILVRLPDT---VVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTTAGESD----WR 76 (508)
T ss_dssp ---CEEEEEEECSSEEEEEEEETTTE---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHCGGG----CC
T ss_pred ccCCEEEEEEecCcceEEEEECCCCC---EEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHhcCCCh----hh
Confidence 34558999999999999999998774 55443322321 1 111234678999999999999987755331 34
Q ss_pred ceeeeeeeee----eeee
Q 011505 169 QRELGFTFSF----PVMQ 182 (484)
Q Consensus 169 ~~~lGftFSf----Pv~q 182 (484)
...||++-.. |+|.
T Consensus 77 I~~Igis~~~~~~v~~D~ 94 (508)
T 3ifr_A 77 PGGICVTGMLPAVVLLDD 94 (508)
T ss_dssp EEEEEEEECSSCBEEECT
T ss_pred eEEEEEECCCCcEEEECC
Confidence 5667777666 6663
No 35
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*
Probab=97.98 E-value=0.00073 Score=71.91 Aligned_cols=61 Identities=11% Similarity=0.156 Sum_probs=44.1
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhc
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQE 158 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~ 158 (484)
.++|+||+|+|++|+++++.+|+ ++...+..++. | ......+++++++.+.+++++.+++.
T Consensus 4 ~~~lgIDiGtts~K~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~ 67 (504)
T 3ll3_A 4 KYIIGMDVGTTATKGVLYDINGK---AVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQKI 67 (504)
T ss_dssp EEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEecCCceEEEEEcCCCC---EEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999998775 55443332321 1 11223457899999999999998764
No 36
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Probab=97.38 E-value=0.002 Score=62.50 Aligned_cols=109 Identities=14% Similarity=0.126 Sum_probs=58.7
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
++|+||+|+||.++++++-+++ ++.... .++ +...+.. ++.+++.+++.+... . ...+.+
T Consensus 2 ~~lGID~GsT~tk~av~d~~~~---il~~~~----~~~----g~~~e~a---~~vl~~~~~~a~~~~----~--~~~~~a 61 (276)
T 4ehu_A 2 YTMGLDIGSTASKGVILKNGED---IVASET----ISS----GTGTTGP---SRVLEKLYGKTGLAR----E--DIKKVV 61 (276)
T ss_dssp EEEEEEECSSCEEEEEEETTTE---EEEEEE----ESC----CTTSSHH---HHHHHHHHHHHCCCG----G--GEEEEE
T ss_pred eEEEEEcCccEEEEEEEECCCe---EEEEEE----ecC----CCCHHHH---HHHHHHHHHHCCCcc----h--hccccc
Confidence 5899999999999999986553 554321 222 2222222 234555555544321 1 111111
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCCCcEEEEEEccCcc-eEEEc
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSN-AAYVE 249 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~N-a~yie 249 (484)
+.. .+ . + ++ +.+. -.+|...|..++..+..++...-+.+|.|+. ..++.
T Consensus 62 ~t~--------~~----~-~------a~---~~~~---~~Vne~~aha~a~~~~~~~~~~vl~lgG~~~~~~~~~ 111 (276)
T 4ehu_A 62 VTG--------YG----R-M------NY---SDAD---KQISELSCHARGVNFIIPETRTIIDIGGQDAKVLKLD 111 (276)
T ss_dssp EES--------TT----G-G------GC---CSCS---EECCHHHHHHHHHHHHSTTCCEEEEECSSCEEEEEEC
T ss_pred cCc--------hH----H-H------Hh---hCCC---cccchHHHHHHHHHHhCCCCCeEEEEcCCCceEEEEE
Confidence 111 00 0 0 11 2333 3789999999988877666655566666554 44443
No 37
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5
Probab=97.33 E-value=0.0017 Score=63.37 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=30.8
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE-cCChhHHHHHHHHHHh
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH-SNDGSGIGAALLAASH 477 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~-~~Dgs~iGAAl~Aa~~ 477 (484)
.|.+.||+. +.|.+++.+.+.+.. .|.+-. .+..+.+|||++|+-.
T Consensus 211 ~i~~~GG~a-~n~~~~~~~~~~lg~--------~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 211 DVVMTGGVA-QNYGVRGALEEGLGV--------EIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp SEEEESGGG-GCHHHHHHHHHHHCS--------CEECCGGGGGHHHHHHHHHHHHH
T ss_pred eEEEeCccc-cCHHHHHHHHHHHCC--------CeEeCCCcchHhHHHHHHHHHHh
Confidence 477777765 588888888776631 233222 3446899999998653
No 38
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=96.85 E-value=0.0025 Score=67.82 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=55.1
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
|+.++|+||+|+|++|+++++.+|+ ++...+..++. |. .....+++++++.+.+++++.+++.+... .+.
T Consensus 1 ~~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I 73 (510)
T 2p3r_A 1 EKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQI 73 (510)
T ss_dssp CCCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGE
T ss_pred CCcEEEEEEcCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hhe
Confidence 5568999999999999999998775 55443322221 11 11234578999999999999998754321 235
Q ss_pred eeeeeeeee----eee
Q 011505 170 RELGFTFSF----PVM 181 (484)
Q Consensus 170 ~~lGftFSf----Pv~ 181 (484)
..||++... |++
T Consensus 74 ~~Igis~~~~~~v~~D 89 (510)
T 2p3r_A 74 AAIGITNQRETTIVWE 89 (510)
T ss_dssp EEEEEEECSSCBEEEE
T ss_pred EEEEEeCCcCcEEEEE
Confidence 556666542 666
No 39
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=96.76 E-value=0.0031 Score=67.37 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=55.0
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeee--cCC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCcee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVS--IPP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRE 171 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~--ip~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~ 171 (484)
.++|+||+|+|++|+++++.+|+ ++...+..++ .|. .....+++++++.+.++|++.+++.+... .+...
T Consensus 26 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~~~~~~----~~I~~ 98 (520)
T 4e1j_A 26 GYILAIDQGTTSTRAIVFDGNQK---IAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEKSGITA----NDIAA 98 (520)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEE
T ss_pred CeEEEEEeCCcceEEEEECCCCC---EEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEE
Confidence 47999999999999999998775 5544332222 121 11234678999999999999988754321 34566
Q ss_pred eeeeeee----eee
Q 011505 172 LGFTFSF----PVM 181 (484)
Q Consensus 172 lGftFSf----Pv~ 181 (484)
||++... |++
T Consensus 99 Igis~~g~~~v~~D 112 (520)
T 4e1j_A 99 IGITNQRETVVVWD 112 (520)
T ss_dssp EEEEECSSCEEEEE
T ss_pred EEEeCCcceEEEEE
Confidence 7777655 676
No 40
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=96.73 E-value=0.0035 Score=66.62 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=53.7
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
..++|+||+|+|++|+++++.+|+ ++...+..++. | +.....+++++++.+.+++++.+++.+... .+..
T Consensus 4 ~~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~~~~~~----~~I~ 76 (506)
T 3h3n_X 4 KNYVMAIDQGTTSSRAIIFDRNGK---KIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIESGIRP----EAIA 76 (506)
T ss_dssp CCEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEE
T ss_pred CCEEEEEEcCCCceEEEEECCCCC---EEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hheE
Confidence 348999999999999999998775 55443322221 1 112234578999999999999988754321 2345
Q ss_pred eeeeeee----eeee
Q 011505 171 ELGFTFS----FPVM 181 (484)
Q Consensus 171 ~lGftFS----fPv~ 181 (484)
.||++-. .|+|
T Consensus 77 ~Igis~~~~~~v~~D 91 (506)
T 3h3n_X 77 GIGITNQRETTVVWD 91 (506)
T ss_dssp EEEEEECSSCBEEEE
T ss_pred EEEeeCCcccEEEEe
Confidence 5555532 3666
No 41
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=96.72 E-value=0.0035 Score=66.34 Aligned_cols=79 Identities=19% Similarity=0.187 Sum_probs=53.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
++|+||+|||++|+++++.+|+ ++......++. |. .....+.+++++.+.+++++.+++.+... .+...|
T Consensus 3 ~~lgiDiGtT~~k~~l~d~~g~---i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~~I 75 (495)
T 2dpn_A 3 FLLALDQGTTSSRAILFTLEGR---PVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRRAGAEA----GEVLAL 75 (495)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGCCEE
T ss_pred EEEEEeeCCcceEEEEECCCCC---EEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998775 55443322221 21 11233578899999999999988754321 235667
Q ss_pred eeeee----eeee
Q 011505 173 GFTFS----FPVM 181 (484)
Q Consensus 173 GftFS----fPv~ 181 (484)
|++.. .|++
T Consensus 76 gis~~~~~~~~vD 88 (495)
T 2dpn_A 76 GITNQRETTLLWD 88 (495)
T ss_dssp EEEECSSCBEEEE
T ss_pred EEeCCCccEEEEE
Confidence 77766 5777
No 42
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=96.63 E-value=0.0051 Score=65.26 Aligned_cols=79 Identities=5% Similarity=-0.070 Sum_probs=53.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhc--ccccccCCCCce
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQE--SEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~--~~~~~~~~~~~~ 170 (484)
++|+||+|||++|+++++.+|+ ++......++. |. .....+.+++++.+.++|.+.+++. +.. ..+..
T Consensus 5 ~~lgIDiGtT~~k~~l~d~~g~---i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~~----~~~i~ 77 (503)
T 2w40_A 5 VILSIDQSTQSTKVFFYDEELN---IVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYT----SVIIK 77 (503)
T ss_dssp EEEEEEECSSEEEEEEEETTCC---EEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHHHHSS----SCEEE
T ss_pred EEEEEEeCCcceEEEEECCCCC---EEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHHhhcCCC----ccceE
Confidence 6899999999999999998775 55443322221 11 1112357899999999999998764 321 12356
Q ss_pred eeeeeee----eeee
Q 011505 171 ELGFTFS----FPVM 181 (484)
Q Consensus 171 ~lGftFS----fPv~ 181 (484)
.||++.. .|++
T Consensus 78 ~Igis~~~~~~~~~D 92 (503)
T 2w40_A 78 CIGITNQRETVIIWD 92 (503)
T ss_dssp EEEEEECSSCEEEEE
T ss_pred EEEEcCCcceEEEEE
Confidence 6777766 4777
No 43
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=96.62 E-value=0.0049 Score=65.36 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=53.8
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCcee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRE 171 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~ 171 (484)
.++|+||+|+|++|+++++.+|+ ++...+..++. |. .....+++++++.+.+++++.+++.+... .+...
T Consensus 6 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~I~~ 78 (501)
T 3g25_A 6 KYILSIDQGTTSSRAILFNQKGE---IAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINENDVRA----DQIAG 78 (501)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHTTTCCG----GGEEE
T ss_pred cEEEEEEeCccceEEEEEcCCCC---EEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEE
Confidence 37999999999999999998775 55443332321 11 11234578999999999999988754321 23455
Q ss_pred eeeeee----eeee
Q 011505 172 LGFTFS----FPVM 181 (484)
Q Consensus 172 lGftFS----fPv~ 181 (484)
||++-. .|++
T Consensus 79 Igis~~~~~~v~~D 92 (501)
T 3g25_A 79 IGITNQRETTVVWD 92 (501)
T ss_dssp EEEEECSSCEEEEE
T ss_pred EEEECCcCcEEEEE
Confidence 666543 4676
No 44
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=96.62 E-value=0.0035 Score=67.00 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=53.1
Q ss_pred CceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCC
Q 011505 92 DEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGR 168 (484)
Q Consensus 92 ~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~ 168 (484)
+|+.+|||||+|.|+.|+++++.+|+ ++...+.+++. |. ....-+++++++-+.++|++.+++.+.+. .+
T Consensus 1 tekkYvlgID~GTss~Ka~l~d~~G~---~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~~~~~~----~~ 73 (526)
T 3ezw_A 1 TEKKYIVALDQGTTSSRAVVMDHDAN---IISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAKADISS----DQ 73 (526)
T ss_dssp --CCEEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GG
T ss_pred CCceEEEEEEccccceeeeEEcCCCC---EEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHHcCCCh----hh
Confidence 47889999999999999999998775 55443333321 21 12233678999999999999998766432 34
Q ss_pred ceeeeee
Q 011505 169 QRELGFT 175 (484)
Q Consensus 169 ~~~lGft 175 (484)
+..||||
T Consensus 74 I~aIgis 80 (526)
T 3ezw_A 74 IAAIGIT 80 (526)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5666665
No 45
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=96.52 E-value=0.0055 Score=65.06 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=53.5
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCC-----ccccCcchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPH-----LMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~-----~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
++|+||+|+|++|+++++.+|+ ++.... .+.|.. ....+++++++.+.+++.+.+++.+... .+..
T Consensus 3 ~~lgiDiGtts~k~~l~d~~G~---i~~~~~--~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~~~~----~~i~ 73 (504)
T 2d4w_A 3 YVLAIDQGTTSSRAIVFDHSGE---IYSTGQ--LEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTRGNLTH----EDIA 73 (504)
T ss_dssp EEEEEEECSSEEEEEEECTTSC---EEEEEE--EECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHTTCCG----GGEE
T ss_pred EEEEEecCCcceEEEEECCCCC---EEEEEE--EecceecCCCCceeECHHHHHHHHHHHHHHHHHHcCCCc----ccEE
Confidence 6899999999999999998775 554433 233321 1123578899999999999988754321 2356
Q ss_pred eeeeeeee----eee
Q 011505 171 ELGFTFSF----PVM 181 (484)
Q Consensus 171 ~lGftFSf----Pv~ 181 (484)
.||++... |++
T Consensus 74 ~Igis~~g~~~v~vD 88 (504)
T 2d4w_A 74 AVGITNQRETAVVWD 88 (504)
T ss_dssp EEEEEECSSCBEEEE
T ss_pred EEEEeCCCCeEEEEE
Confidence 67777664 676
No 46
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=96.46 E-value=0.0052 Score=66.06 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=50.4
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCCcee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRE 171 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~ 171 (484)
.++|+||+|+|++|+++++.+|+ ++...+..+++ | ......+++++++.+.++|++.+++.+... .+...
T Consensus 5 ~~~lgIDiGtts~ka~l~d~~G~---il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~~~~~~----~~I~~ 77 (554)
T 3l0q_A 5 SYFIGVDVGTGSARAGVFDLQGR---MVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQADINP----IQVKG 77 (554)
T ss_dssp CEEEEEEECSSEEEEEEEETTSC---EEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHHHTCCG----GGEEE
T ss_pred cEEEEEEECcccEEEEEECCCCC---EEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHHcCCCH----hHEEE
Confidence 48999999999999999998775 55443322221 1 112234678999999999999998754321 23455
Q ss_pred eeee
Q 011505 172 LGFT 175 (484)
Q Consensus 172 lGft 175 (484)
||++
T Consensus 78 Igis 81 (554)
T 3l0q_A 78 LGFD 81 (554)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6654
No 47
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=96.27 E-value=0.009 Score=63.23 Aligned_cols=76 Identities=14% Similarity=0.132 Sum_probs=50.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
++|+||+|||++|+++++.+|+ ++......++. |. .....+++++++.+.+++.+.+++.+... .+...|
T Consensus 4 ~~lgiDiGtt~~k~~l~d~~g~---~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~~~~~~----~~i~~I 76 (497)
T 2zf5_O 4 FVLSLDEGTTSARAIIFDRESN---IHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQSARIEP----NQIAAI 76 (497)
T ss_dssp EEEEEEECSSEEEEEEECTTCC---EEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHHHTCCG----GGEEEE
T ss_pred EEEEEecCCchhEEEEECCCCC---EEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHhcCCCc----ccEEEE
Confidence 6899999999999999998764 55443322221 11 11123578899999999999987754321 234556
Q ss_pred eeeeee
Q 011505 173 GFTFSF 178 (484)
Q Consensus 173 GftFSf 178 (484)
|++...
T Consensus 77 gis~~~ 82 (497)
T 2zf5_O 77 GVTNQR 82 (497)
T ss_dssp EEEECS
T ss_pred EEecCC
Confidence 666553
No 48
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=96.26 E-value=0.0093 Score=62.88 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=52.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--CC-CccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--PP-HLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p~-~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
+||+||+|||++|+++++.+|+ ++...+..+++ |+ .....+++++++.+.+++++.+++.. ..+...|
T Consensus 1 ~~lgiDiGtt~~k~~l~d~~g~---~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~~~------~~~i~~I 71 (484)
T 2itm_A 1 MYIGIDLGTSGVKVILLNEQGE---VVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHS------LQDVKAL 71 (484)
T ss_dssp CEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHHSC------CTTCCEE
T ss_pred CEEEEEecCcccEEEEECCCCC---EEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHhCC------ccceEEE
Confidence 3799999999999999998765 55443322221 11 11123578899999999999887642 1235667
Q ss_pred eeeeee----eeee
Q 011505 173 GFTFSF----PVMQ 182 (484)
Q Consensus 173 GftFSf----Pv~q 182 (484)
|++... +++.
T Consensus 72 gis~~~~~~v~~D~ 85 (484)
T 2itm_A 72 GIAGQMHGATLLDA 85 (484)
T ss_dssp EEEECSSCBEEECT
T ss_pred EEcCCcCcEEEECC
Confidence 777666 6663
No 49
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=96.25 E-value=0.0085 Score=63.74 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=49.2
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec--C-CCccccCcchhHHHHHHHHHHHHhhcccccccCCCCcee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI--P-PHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRE 171 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i--p-~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~ 171 (484)
.++|+||+|+|++|+++++.+|+ ++...+..+++ | +.....+++++++.+.+++++.+ +.+.. ..+...
T Consensus 5 ~~~lgIDiGtts~k~~l~d~~G~---il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~~~~~----~~~I~~ 76 (511)
T 3hz6_A 5 FYIATFDIGTTEVKAALADRDGG---LHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-QSGVD----ARRVSA 76 (511)
T ss_dssp CEEEEEEECSSEEEEEEECTTSC---EEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-TTTCC----GGGEEE
T ss_pred cEEEEEEeCCCceEEEEECCCCC---EEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-hcCCC----hhHeEE
Confidence 37999999999999999998775 55443322221 1 11223467899999999999998 54322 123455
Q ss_pred eeeee
Q 011505 172 LGFTF 176 (484)
Q Consensus 172 lGftF 176 (484)
||++-
T Consensus 77 Igis~ 81 (511)
T 3hz6_A 77 IVLSG 81 (511)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 66553
No 50
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=96.14 E-value=0.0093 Score=64.33 Aligned_cols=75 Identities=11% Similarity=0.220 Sum_probs=49.5
Q ss_pred eeEEEEEeCCceEEEEEEEe-CCCcceeEEeeeeeee-------cC-------CCccccCcchhHHHHHHHHHHHHhhcc
Q 011505 95 GTYYALDLGGTNFRVLRVHL-GGKGVGLINQEFAEVS-------IP-------PHLMTGTSDALFDYIAAELAKFVSQES 159 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l-~g~~~~i~~~~~~~~~-------ip-------~~~~~~~~~~lfd~Ia~~i~~fl~~~~ 159 (484)
.++|+||+|+|++|+++++. +|+ ++.+.+..++ .| ......+++++++.+.++|++.+++.+
T Consensus 5 ~~~lgIDiGTts~Ka~l~d~~~G~---i~~~~~~~~~~~~~~~~~p~~~~~~~~g~~eqdp~~~~~~~~~~i~~~l~~~~ 81 (572)
T 3jvp_A 5 KYTIGVDYGTESGRAVLIDLSNGQ---ELADHVTPYRHGVIDQYLPNTNIKLGHEWALQHPLDYVEVLTTSVPAVMKESG 81 (572)
T ss_dssp CEEEEEEECSSEEEEEEEETTTCC---EEEEEEEECTTCCBSSBSTTSCCBCCTTCCEECHHHHHHHHTTHHHHHHHC--
T ss_pred CEEEEEecCCcceEEEEEECCCCe---EEEEEEeccCCccccccCCccccCCCCCcEEECHHHHHHHHHHHHHHHHHHcC
Confidence 47999999999999999998 775 5554443333 12 122233567899999999999998764
Q ss_pred cccccCCCCceeeeeee
Q 011505 160 EEFKLSPGRQRELGFTF 176 (484)
Q Consensus 160 ~~~~~~~~~~~~lGftF 176 (484)
.. ..++..||++.
T Consensus 82 ~~----~~~I~~Igis~ 94 (572)
T 3jvp_A 82 VD----ADDVIGIGVDF 94 (572)
T ss_dssp -C----CSCEEEEEEEE
T ss_pred CC----hhHEEEEEEec
Confidence 32 13355566554
No 51
>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A
Probab=95.23 E-value=0.034 Score=53.59 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=68.8
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.+|+||+|+||+++++++ ++ ++.. .+.+++.. ..+.+++..++.+.+.. .. .+.. |+.
T Consensus 4 M~L~IDIGNT~ik~gl~~-~~---~l~~----~~r~~T~~-~~t~de~~~~l~~l~~~----~~-------~~i~--~i~ 61 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITE-DG---KTFR----RWRLSTGV-FQTEDELFSHLHPLLGD----AM-------REIK--GIG 61 (249)
T ss_dssp EEEEEEECSSEEEEEEES-SS---SSCE----EEEEECCT-TCCHHHHHHHHHHHHGG----GG-------GGEE--EEE
T ss_pred eEEEEEECCCeEEEEEEE-CC---EEEE----EEEecCCC-CCCHHHHHHHHHHHHhh----cc-------ccCC--EEE
Confidence 479999999999999996 22 2442 36666654 34566776666544332 11 1122 333
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhc-CCCceE---------EEEEe------chHHHHhcccccCCCcEEEEEE
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQ-GLDMSV---------SALVN------DTVGTLAGGRYTNKDVVAAVIL 239 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~-gl~v~v---------~alvN------Dtvatlla~~y~~~~~~iglIl 239 (484)
+|=|+. .+...|++.+++. +++..+ +...| |-.+.+++.........+-+-+
T Consensus 62 IsSVvp------------~~~~~~~~~~~~~~~~~p~~v~~~~~gl~~~y~~P~~lG~DR~~~~~aa~~~~~~~~iVvD~ 129 (249)
T 3bex_A 62 VASVVP------------TQNTVIERFSQKYFHISPIWVKAKNGCVKWNVKNPSEVGADRVANVVAFVKEYGKNGIIIDM 129 (249)
T ss_dssp EEESCH------------HHHHHHHHHHHHHHSCCCEECCCCSSSSEECSSCGGGSCHHHHHHHHHHHHHTCSCEEEEEE
T ss_pred EEcCcH------------HHHHHHHHHHHHhcCCCeEEEEccCCCceeccCChhhcCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 443332 2334455555442 432111 11233 5556666665444567788999
Q ss_pred ccCcceEEEcc
Q 011505 240 GTGSNAAYVER 250 (484)
Q Consensus 240 GTG~Na~yie~ 250 (484)
||.+..+++.+
T Consensus 130 GTA~T~d~v~~ 140 (249)
T 3bex_A 130 GTATTVDLVVN 140 (249)
T ss_dssp SSEEEEEEEET
T ss_pred CCceEEEEEeC
Confidence 99999999943
No 52
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=95.23 E-value=0.041 Score=57.87 Aligned_cols=79 Identities=22% Similarity=0.127 Sum_probs=49.2
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeee-----eecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCc
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAE-----VSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQ 169 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~-----~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~ 169 (484)
..+|+||+|+|++|+++++.+|+.....+..... .+.|... ..+.+++++.+.+.+++..... .+.
T Consensus 4 ~~~lgiDiGtts~k~~l~d~~g~~~~~~~~~~~~~~~~~~~~~g~~-e~d~~~~~~~i~~~~~~~~~~~--------~~i 74 (489)
T 2uyt_A 4 RNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYV-TWDVDSLESAIRLGLNKVCAAG--------IAI 74 (489)
T ss_dssp EEEEEEEECSSEEEEEEEEEEGGGTEEEEEEEEEEECCCEEETTEE-ECCHHHHHHHHHHHHHHHHHTT--------CCC
T ss_pred ceEEEEEecCCCceEEEEEecCccceEEEEEEeecCCCccccCCeE-EECHHHHHHHHHHHHHHHHhCC--------CCc
Confidence 3689999999999999999876521111111000 1111111 2346688888888888875421 235
Q ss_pred eeeeeee----eeeeee
Q 011505 170 RELGFTF----SFPVMQ 182 (484)
Q Consensus 170 ~~lGftF----SfPv~q 182 (484)
..||++. ..|+|.
T Consensus 75 ~~Igis~q~~~~v~~D~ 91 (489)
T 2uyt_A 75 DSIGIDTWGVDFVLLDQ 91 (489)
T ss_dssp CEEEEEECSSCEEEECT
T ss_pred eEEEEecCcccEEEECC
Confidence 7788888 788873
No 53
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=95.08 E-value=0.028 Score=59.42 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=39.6
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeec-C-CCccccCcchhHHHHHHHHHHHH
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSI-P-PHLMTGTSDALFDYIAAELAKFV 155 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~i-p-~~~~~~~~~~lfd~Ia~~i~~fl 155 (484)
.++|+||+|+|++|+++++.+|+ ++...+..+++ | ......+++++++.+.+++++.+
T Consensus 6 ~~~lgIDiGTts~Ka~l~d~~G~---i~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~ 65 (482)
T 3h6e_A 6 GATIVIDLGKTLSKVSLWDLDGR---MLDRQVRPSIPLEIDGIRRLDAPDTGRWLLDVLSRYA 65 (482)
T ss_dssp --CEEEEECSSEEEEEEECTTSC---EEEEEEEECCCEESSSCEECCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCeEEEEEECCCc---EEEEEEecCCcccCCCceeECHHHHHHHHHHHHHHHH
Confidence 37899999999999999997664 55443322321 1 11123467889999999998876
No 54
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=94.46 E-value=0.19 Score=48.85 Aligned_cols=123 Identities=14% Similarity=0.085 Sum_probs=67.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeee
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFT 175 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGft 175 (484)
.+|+||+|+||+++++++- + ++.. .|++|++ ..+.+++ +..+..+++..+.+. .+. -|+.
T Consensus 3 MlL~IDIGNT~iK~gl~d~-~---~l~~----~~r~~T~--~~t~de~----~~~l~~ll~~~~~~~----~~I--~~ii 62 (266)
T 3djc_A 3 LILCIDVGNSHIYGGVFDG-D---EIKL----RFRHTSK--VSTSDEL----GIFLKSVLRENNCSP----ETI--RKIA 62 (266)
T ss_dssp CEEEEEECSSEEEEEEEET-T---EEEE----EEEEECS--CCCHHHH----HHHHHHHHHTTTCCG----GGC--CEEE
T ss_pred eEEEEEECCCeEEEEEEEC-C---EEEE----EEEecCC--CCCHHHH----HHHHHHHHHHcCCCh----hhc--eEEE
Confidence 4799999999999999963 2 3543 3778876 2355554 445556666554321 112 2444
Q ss_pred eeeeeeeeecCceEEECccHHHHHHHHHHhc-CCCceE----------EEEEe------chHHHHhcccccCC-CcEEEE
Q 011505 176 FSFPVMQTSINTGTLVGRDVVEELSRAMAKQ-GLDMSV----------SALVN------DTVGTLAGGRYTNK-DVVAAV 237 (484)
Q Consensus 176 FSfPv~q~~~~~G~l~G~dv~~~L~~al~r~-gl~v~v----------~alvN------Dtvatlla~~y~~~-~~~igl 237 (484)
+|-|+. ++...|++++++. +++..+ ....| |-.+.+++.....+ ...+=+
T Consensus 63 ISSVvp------------~~~~~l~~~~~~~~~~~~~~v~~~~~~g~~~~y~~P~~lG~DR~~~~vaA~~~~~~~~~iVV 130 (266)
T 3djc_A 63 ICSVVP------------QVDYSLRSACVKYFSIDPFLLQAGVKTGLNIKYRNPVEVGADRIANAIAATHSFPNQNIIVI 130 (266)
T ss_dssp EEESCH------------HHHHHHHHHHHHHTCCCCEECCSSSCCCCEECCSSGGGSCHHHHHHHHHHHHHSTTSEEEEE
T ss_pred EecchH------------hHHHHHHHHHHHHcCCCeEEEcCCCCCCcccCCCChhhhHHHHHHHHHHHHHhcCCCCEEEE
Confidence 444443 2445666666553 443221 11122 44555555443332 344555
Q ss_pred EEccCcceEEEcc
Q 011505 238 ILGTGSNAAYVER 250 (484)
Q Consensus 238 IlGTG~Na~yie~ 250 (484)
=+||=+...++..
T Consensus 131 D~GTA~T~d~v~~ 143 (266)
T 3djc_A 131 DFGTATTFCAISH 143 (266)
T ss_dssp EESSEEEEEEECT
T ss_pred ECCCeeEEEEEcC
Confidence 6677667677653
No 55
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=93.20 E-value=0.16 Score=53.92 Aligned_cols=54 Identities=9% Similarity=0.070 Sum_probs=39.1
Q ss_pred eeeEEEEEeCCceEEEEEEE-eCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHH
Q 011505 94 KGTYYALDLGGTNFRVLRVH-LGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAK 153 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~-l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~ 153 (484)
..++|+||+|+|++|+++++ .+|+ ++...+ .+.|... ..+++++++.+.+.+++
T Consensus 4 ~~~~lgIDiGtts~ka~l~d~~~G~---i~~~~~--~~~~g~~-e~d~~~~~~~i~~~l~~ 58 (515)
T 3i8b_A 4 RTLVAGVDTSTQSCKVRVTDAETGE---LVRFGQ--AKHPNGT-SVDPSYWWSAFQEAAEQ 58 (515)
T ss_dssp SCEEEEEEECSSEEEEEEEETTTCC---EEEEEE--EECCSSS-EECTHHHHHHHHHHHHH
T ss_pred CcEEEEEEeccccEEEEEEECCCCe---EEEEEE--EeCCCCc-eECHHHHHHHHHHHHHh
Confidence 34799999999999999999 6775 665433 3445333 34678888888877765
No 56
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}
Probab=92.29 E-value=0.99 Score=45.15 Aligned_cols=58 Identities=16% Similarity=0.120 Sum_probs=38.6
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc--C--CCcEEEEEEccCc-ceEEEcc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT--N--KDVVAAVILGTGS-NAAYVER 250 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~--~--~~~~iglIlGTG~-Na~yie~ 250 (484)
.-++.++.+.+++++.|+++ ..++|..+|+..+..+. + ....+=+=+|-|| ..+.+..
T Consensus 148 ~~~~~v~~~~~~~~~aGl~~--~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~ 210 (377)
T 2ych_A 148 ARQEAVAGVLEALRGAGLVP--VVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRG 210 (377)
T ss_dssp EEHHHHHHHHHHHHHTTCEE--EEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEET
T ss_pred ecHHHHHHHHHHHHHCCCce--EEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEEC
Confidence 44456788888998888765 58999999987764321 1 2344555678877 5555543
No 57
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=88.57 E-value=0.9 Score=48.30 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=32.3
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.++||.. +.+.+.+.+...+. ..|......+++.+|||++|+++.
T Consensus 437 ~i~~~GGga-~s~~~~Qi~ADv~g--------~pV~~~~~~e~~alGaA~lA~~a~ 483 (538)
T 4bc3_A 437 KILATGGAS-HNREILQVLADVFD--------APVYVIDTANSACVGSAYRAFHGL 483 (538)
T ss_dssp CEEEEEGGG-GCHHHHHHHHHHHT--------SCEEECCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEcchh-cCHHHHHHHHHHhC--------CceEecCCCCchHHHHHHHHHHHh
Confidence 355555554 78888776665442 245554567899999999998765
No 58
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}
Probab=87.29 E-value=6.3 Score=37.12 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=54.3
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCCcceeEEeeee-eeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceee
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFA-EVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQREL 172 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~-~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~l 172 (484)
...+++||+|.+++|+.+++-++ .++..... ..++.+.... + ++.....+..+++...... . ...-
T Consensus 27 ~~~~~gIDiGS~s~k~vi~~~~~---~~l~~~~~~~~~l~~g~i~-d----~~~~~~~l~~~~~~~~~~~----~-~~~~ 93 (272)
T 3h1q_A 27 PPYKVGVDLGTADIVLVVTDQEG---IPVAGALKWASVVKDGLVV-D----YIGAIQIVRELKAKVERLL----G-SELF 93 (272)
T ss_dssp SCCEEEEECCSSEEEEEEECTTC---CEEEEEEEECCCCBTTBCT-T----HHHHHHHHHHHHHHHHHHS----S-SCCC
T ss_pred CCEEEEEEcccceEEEEEECCCC---cEEEEEeecccccCCCEEE-c----HHHHHHHHHHHHHHHHHhc----C-CccC
Confidence 34799999999999998864333 23322111 1122222210 1 3344444444443211100 0 0011
Q ss_pred eeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccc
Q 011505 173 GFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGR 227 (484)
Q Consensus 173 GftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~ 227 (484)
-.+.+.|..... .++ +.+++++++.|+++ ..++++..|++.+..
T Consensus 94 ~~v~tvp~~~~~------~~~---~~~~~~~~~~g~~~--~~i~~e~~A~a~~~~ 137 (272)
T 3h1q_A 94 QAATAIPPGTVG------RNA---EACGHVVAGAGLEL--VTLVDEPVAAARALG 137 (272)
T ss_dssp EEEEECCSCC---------CT---THHHHHHHHTTCEE--EEEECHHHHHHHHHT
T ss_pred eEEEEcCCCCCH------HHH---HHHHHHHHHcCCee--eecccHHHHHHHHHc
Confidence 223444543221 122 34666777667765 578999999887643
No 59
>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}
Probab=85.58 E-value=1.2 Score=43.26 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=29.4
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHH
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAA 149 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~ 149 (484)
+|+||+|+||+++++++ ++ ++.. .|.+++.. ..+.+++..++.+
T Consensus 2 lL~IDIGNT~ik~gl~~-~~---~l~~----~~r~~T~~-~~t~de~~~~l~~ 45 (268)
T 2h3g_X 2 IFVLDVGNTNAVLGVFE-EG---ELRQ----HWRMETDR-HKTEDEYGMLVKQ 45 (268)
T ss_dssp EEEEEECSSEEEEEEEE-TT---EEEE----EEEEECCT-TCCHHHHHHHHHH
T ss_pred EEEEEECcCcEEEEEEE-CC---EEEE----EEEecCCC-cCCHHHHHHHHHH
Confidence 68999999999999997 22 2442 36666654 2355666555544
No 60
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=85.47 E-value=4.2 Score=41.09 Aligned_cols=83 Identities=19% Similarity=0.179 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++++.+++|...++-..|.. .+.. ...-..|.+.||. ...|.+++.+++.+. . .+.+
T Consensus 313 r~~~~~~~~~~~~~i~~~i~~~l~~----~~~~-----~~~i~~V~LvGG~-s~~p~v~~~l~~~f~----~----~~~v 374 (409)
T 4gni_A 313 RLRYETIARTVFEGFNRLVESAVKK----AGLD-----PLDVDEVIMSGGT-SNTPRIAANFRYIFP----E----STRI 374 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHH----TTCC-----GGGCCEEEEESGG-GGCHHHHHHHHHHSC----T----TSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----cCCC-----HHHCCEEEEECCc-cccHHHHHHHHHHcC----C----cccc
Confidence 4455567777777776666655542 2221 0011234444554 357888887777653 2 1111
Q ss_pred ---------EEcCChhHHHHHHHHHHhccc
Q 011505 460 ---------EHSNDGSGIGAALLAASHSKY 480 (484)
Q Consensus 460 ---------~~~~Dgs~iGAAl~Aa~~~~~ 480 (484)
.-.+.+-..|||+.++...++
T Consensus 375 ~~P~~~~~~~~p~~ava~GAa~~~~~~~~~ 404 (409)
T 4gni_A 375 LAPSTDPSALNPSELQARGAALQASLIQEH 404 (409)
T ss_dssp ESTTTCTTCCCTTTHHHHHHHHHHHHHHC-
T ss_pred ccccccCCCcCHHHHHHHHHHHHhhhhhhh
Confidence 125678899999999887754
No 61
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=84.28 E-value=3.7 Score=41.03 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC---CCcEEEEEEccCcc
Q 011505 195 VVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN---KDVVAAVILGTGSN 244 (484)
Q Consensus 195 v~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~N 244 (484)
-.+.+.++..+.|++ ++.++|+.+|++++..... ....+=+=+|-||-
T Consensus 168 ~r~~~~~a~~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~~~vlV~D~Gggt~ 218 (394)
T 3qfu_A 168 QRQATKDAGTIAGLN--VLRIVNEPTAAAIAYGLDKSDKEHQIIVYDLGGGTF 218 (394)
T ss_dssp HHHHHHHHHHHTTCE--EEEEEEHHHHHHHHTTTTSCSSCEEEEEEEECSSCE
T ss_pred HHHHHHHHHHHcCCc--eEEEecCHHHHHHHHhhccCCCCceEEEEEcCCCce
Confidence 346677788777875 4689999999998764332 22223333566663
No 62
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=83.67 E-value=5.9 Score=39.79 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++++.+++|...++-..|.. .+... ..-..|.+.||. ...|.+++.+++.+. +. .+..
T Consensus 320 r~~~~~~~~~~~~~i~~~i~~~l~~----~~~~~-----~~i~~VvLvGG~-s~~p~l~~~l~~~~~---~~----~v~~ 382 (404)
T 3i33_A 320 RARFEELNADLFRGTLEPVEKALRD----AKLDK-----GQIQEIVLVGGS-TRIPKIQKLLQDFFN---GK----ELNK 382 (404)
T ss_dssp HHHHHHHTHHHHHHTHHHHHHHHHH----HTCCG-----GGCCEEEEESGG-GGCHHHHHHHHHHTT---TC----CCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----cCCCH-----hhCCEEEEECCc-cccHHHHHHHHHHcC---CC----CCCC
Confidence 3445566667777766666555433 22210 011234444444 357888888887652 11 1111
Q ss_pred E-EcCChhHHHHHHHHHHhc
Q 011505 460 E-HSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~-~~~Dgs~iGAAl~Aa~~~ 478 (484)
. -...+-.+|||+.|+..+
T Consensus 383 ~~~p~~ava~Gaa~~a~~l~ 402 (404)
T 3i33_A 383 SINPDEAVAYGAAVQAAILI 402 (404)
T ss_dssp SSCTTTHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHhc
Confidence 1 245678899999998654
No 63
>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=80.02 E-value=6.1 Score=41.69 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.+++++++=-|.-..-.+-.+-+..+.. ...|.++||.. +.+.+.+.+...+ + ..|.+-...+
T Consensus 375 ~i~RAvlEgia~~~r~~le~l~~~~g~~--------~~~i~v~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~E 437 (526)
T 3ezw_A 375 HIIRATLESIAYQTRDVLEAMQADSGIR--------LHALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVRE 437 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC--------CSEEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCEEEEECchh-hCHHHHHHHHHHH----C----CEEEeCCCCc
Confidence 4555666654544444444444444431 24577777764 7787777665543 2 2565555788
Q ss_pred hhHHHHHHHHHHhcc
Q 011505 465 GSGIGAALLAASHSK 479 (484)
Q Consensus 465 gs~iGAAl~Aa~~~~ 479 (484)
++.+|||++|+++.-
T Consensus 438 ~~alGAA~lA~~a~G 452 (526)
T 3ezw_A 438 VTALGAAYLAGLAVG 452 (526)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhC
Confidence 999999999998763
No 64
>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}
Probab=75.92 E-value=2.9 Score=42.71 Aligned_cols=53 Identities=17% Similarity=0.112 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
+-|+.+++-.++-++-.|.++.-.++.. ..|++.||+-++.+.+++.+.+.+.
T Consensus 297 ~~A~la~d~f~yriak~Iga~aa~LG~v---------DaIVfTGGIgEns~~vr~~I~~~l~ 349 (398)
T 4ijn_A 297 EHAKLAYDVYIHRLRKYIGAYMAVLGRT---------DVISFTAGVGENVPPVRRDALAGLG 349 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSC---------CEEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC---------cEEEECCccccccHHHHHHHHHHHh
Confidence 4455555555555555555555555432 6899999999999999999988774
No 65
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*
Probab=75.51 E-value=19 Score=36.85 Aligned_cols=56 Identities=20% Similarity=0.035 Sum_probs=37.5
Q ss_pred ccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc-ceEEEcc
Q 011505 193 RDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS-NAAYVER 250 (484)
Q Consensus 193 ~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~-Na~yie~ 250 (484)
+++++-+.+++++.|+++ ..++|...|+.++....+ +...+-+=+|-|| +.+.+.+
T Consensus 167 ~~~v~n~~~~~~~AGL~v--~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~ 225 (419)
T 4a2a_A 167 LKVYEMFYNFLQDTVKSP--FQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKN 225 (419)
T ss_dssp HHHHHHHHHHHHTTSCSC--EEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCcE--EEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEEC
Confidence 457788899999889876 478999988876532211 1233444488888 5666553
No 66
>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*
Probab=72.73 E-value=12 Score=39.02 Aligned_cols=49 Identities=16% Similarity=0.240 Sum_probs=34.6
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhcc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHSK 479 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~~ 479 (484)
..|.++||.. +.+.+.+.+...+. ..|.+....+++.+|||++|+++.-
T Consensus 406 ~~i~~~GG~a-ks~~~~Qi~Adv~g--------~pV~~~~~~e~~alGaA~la~~a~G 454 (501)
T 3g25_A 406 QSLRVDGGAV-KNNFIMQFQADIVN--------TSVERPEIQETTALGAAFLAGLAVG 454 (501)
T ss_dssp SEEEEESGGG-GCHHHHHHHHHHHT--------SEEEEESCCCHHHHHHHHHHHHHTT
T ss_pred cEEEEecchh-cCHHHHHHHHHHhC--------CceEecCCCcchHHHHHHHHHHHhC
Confidence 3566667754 78888777665442 2455555778999999999997653
No 67
>2p3r_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics,; 2.00A {Escherichia coli} PDB: 3ezw_A 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*
Probab=71.80 E-value=13 Score=38.86 Aligned_cols=76 Identities=16% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCCh
Q 011505 386 LCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDG 465 (484)
Q Consensus 386 i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dg 465 (484)
++++|++=-|.-..-.+-.+-...+.. ...|.++||.. +.+.+.+.+...+ + ..|.+....++
T Consensus 375 l~RAvlEgia~~~r~~~~~l~~~~g~~--------~~~i~~~GGga-~s~~~~Qi~ADv~----g----~pV~~~~~~e~ 437 (510)
T 2p3r_A 375 IIRATLESIAYQTRDVLEAMQADSGIR--------LHALRVDGGAV-ANNFLMQFQSDIL----G----TRVERPEVREV 437 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCC--------CSEEEEESGGG-GCHHHHHHHHHHH----T----SEEEEESCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC--------ccEEEEeCchh-cCHHHHHHHHHHh----C----CceEecCCCCc
Confidence 444555544444444443333333431 13566667754 7888887665544 2 24555456789
Q ss_pred hHHHHHHHHHHhc
Q 011505 466 SGIGAALLAASHS 478 (484)
Q Consensus 466 s~iGAAl~Aa~~~ 478 (484)
+.+|||++|+++.
T Consensus 438 ~alGaA~lA~~a~ 450 (510)
T 2p3r_A 438 TALGAAYLAGLAV 450 (510)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998765
No 68
>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}
Probab=70.32 E-value=17 Score=37.95 Aligned_cols=48 Identities=23% Similarity=0.340 Sum_probs=34.1
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.++||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+.+.
T Consensus 405 ~~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 452 (504)
T 2d4w_A 405 TELRVDGGMV-ANELLMQFQADQL----G----VDVVRPKVAETTALGAAYAAGIAV 452 (504)
T ss_dssp CEEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHH
T ss_pred ceEEEeCCcc-cCHHHHHHHHHHh----C----CeEEeCCCCcchHHHHHHHHHhhc
Confidence 3567777765 6887777666544 2 356555567899999999998765
No 69
>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O
Probab=69.38 E-value=15 Score=38.49 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
+++++|++=-|.-..-.+-.+-...+.. ...|.++||.. +.+.+.+.+...+. ..|.+....+
T Consensus 376 ~l~RAvlEgia~~~r~~~~~l~~~~g~~--------~~~i~~~GGga-~s~~~~Qi~ADv~g--------~pV~~~~~~e 438 (506)
T 3h3n_X 376 DFVRATLQAVAYQSKDVIDTMKKDSGID--------IPLLKVDGGAA-KNDLLMQFQADILD--------IDVQRAANLE 438 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSC--------CCEEEEESGGG-GCHHHHHHHHHHHT--------SEEEECSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCEEEEecccc-cCHHHHHHHHHHhC--------CeEEecCCCc
Confidence 3444555544444444444433333431 13566667754 78888777665442 2454444678
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+++.
T Consensus 439 ~~alGaA~lA~~a~ 452 (506)
T 3h3n_X 439 TTALGAAYLAGLAV 452 (506)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHh
Confidence 99999999998765
No 70
>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*
Probab=67.79 E-value=94 Score=30.29 Aligned_cols=129 Identities=10% Similarity=0.093 Sum_probs=63.0
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccC-cc----hhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGT-SD----ALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~-~~----~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
.+|+||.+.+...+++++- + +++....+.+.-+. .+- ++ .--+.+...|++.+++.+... ++..
T Consensus 2 ~iLgIdts~~~~~val~~~-g---~i~~~~~~~~~~~~---gg~~p~~~~~~h~~~l~~~i~~~L~~agi~~----~did 70 (330)
T 2ivn_A 2 LALGIEGTAHTLGIGIVSE-D---KVLANVFDTLTTEK---GGIHPKEAAEHHARLMKPLLRKALSEAGVSL----DDID 70 (330)
T ss_dssp CEEEEECSSSEEEEEEECS-S---CEEEEEEEECCCTT---CCCCHHHHHHHHHHHHHHHHHHHHHHHTCCT----TTCC
T ss_pred EEEEEEccCCCeEEEEEEC-C---EEEEEEEEEeeccc---CCcCchhhHHHHHHHHHHHHHHHHHHcCCCH----HHCc
Confidence 4799999999999999953 2 25533222121111 110 11 112344455666666655432 3445
Q ss_pred eeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhcccccCC-CcEEEEEEccCcceEE
Q 011505 171 ELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTNK-DVVAAVILGTGSNAAY 247 (484)
Q Consensus 171 ~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~~-~~~iglIlGTG~Na~y 247 (484)
.+.+|. .|=..+++. .|....+.|..++ ++|+ .-+|--.+.+++..| .+ +..+.+++.=|....|
T Consensus 71 ~Ia~~~-GPG~~~~lr----vg~~~ak~la~~~---~~pl---~~v~h~~aHa~~a~~-~~~~~~~~l~v~GG~t~~i 136 (330)
T 2ivn_A 71 VIAFSQ-GPGLGPALR----VVATAARALAVKY---RKPI---VGVNHCIAHVEITKM-FGVKDPVGLYVSGGNTQVL 136 (330)
T ss_dssp EEEEEE-ESSCHHHHH----HHHHHHHHHHHHT---TCCE---EEEEHHHHHHHGGGG-GTCCSCEEEEECSSCEEEE
T ss_pred EEEEEC-CCCchHHHH----HHHHHHHHHHHHc---CCCE---EeeCcHHHHHHHHhh-cCCCCCeEEEEcCCCceEE
Confidence 566552 342111111 3333444444444 6664 345666666666656 32 2225566655743333
No 71
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=67.74 E-value=20 Score=38.52 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
+..+.++++.+++|....+-..|. ..+... ..-..+|-++||- ..|.+++.+++.+ +......
T Consensus 302 r~~~e~l~~~~~~~i~~~v~~~L~----~a~~~~----~~i~~VvLvGG~s--riP~v~~~l~~~f----g~~~~~~--- 364 (605)
T 4b9q_A 302 RAKLESLVEDLVNRSIEPLKVALQ----DAGLSV----SDIDDVILVGGQT--RMPMVQKKVAEFF----GKEPRKD--- 364 (605)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH----HTTCCG----GGCSEEEEESGGG--GSHHHHHHHHHHH----TSCCCSS---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HcCCCH----HHCcEEEEeCCcc--CchHHHHHHHHHh----ccCcCCC---
Confidence 555667778888887777665553 222210 0012455555543 6888888877765 3211111
Q ss_pred EEcCChhHHHHHHHHHHhc
Q 011505 460 EHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 460 ~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.--+.+-..|||+.|++.+
T Consensus 365 ~nPdeaVA~GAai~a~~l~ 383 (605)
T 4b9q_A 365 VNPDEAVAIGAAVQGGVLT 383 (605)
T ss_dssp SCTTTHHHHHHHHHHHHHH
T ss_pred cChhHHHHHhHHHHHHHhc
Confidence 1235678899999998755
No 72
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase, crsytal structure, structural genomics, protein structure initiative; HET: 5RP; 2.31A {Bacillus halodurans} PDB: 3qdk_A*
Probab=67.38 E-value=14 Score=39.33 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=36.5
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.+.||..++.+.+.+.+...+. ..|.+....+++.+|||++|+++.
T Consensus 441 ~~i~~~GGga~ks~~~~Qi~ADv~g--------~pV~~~~~~e~~alGaA~lA~~a~ 489 (572)
T 3jvp_A 441 HELYACGGLPQKNHLLMQIFADVTN--------REIKVAASKQTPALGAAMFASVAA 489 (572)
T ss_dssp EEEEEESSHHHHCHHHHHHHHHHHT--------SCEEEBCCSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCchhhCHHHHHHHHHHHC--------CeeEecCCCccHHHHHHHHHHHhc
Confidence 5688888876578888877766543 246555567899999999998765
No 73
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}
Probab=66.57 E-value=22 Score=37.38 Aligned_cols=48 Identities=25% Similarity=0.180 Sum_probs=34.5
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.+.||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 426 ~~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 473 (515)
T 3i8b_A 426 TRILLIGGGA-KSEAIRTLAPSIL----G----MDVTRPATDEYVAIGAARQAAWVL 473 (515)
T ss_dssp CEEEEESGGG-GCHHHHHHHHHHH----T----SCEEEECCCCHHHHHHHHHHHHHH
T ss_pred CEEEEECchh-cCHHHHHHHHHHh----C----CceEecCCcccHHHHHHHHHHHHc
Confidence 3577777754 7888877766544 2 356665577899999999998765
No 74
>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}
Probab=66.50 E-value=17 Score=37.89 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=33.0
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.++||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+...
T Consensus 396 ~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~alGaA~lA~~~~ 442 (497)
T 2zf5_O 396 ELRVDGGAT-ANDFLMQFQADIL----N----RKVIRPVVKETTALGAAYLAGLAV 442 (497)
T ss_dssp CEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCSCHHHHHHHHHHHHHT
T ss_pred eEEEeCccc-cCHHHHHHHHhhc----C----CeEEEcCCCcchHHHHHHHHHHHh
Confidence 466666665 6787777666544 2 256555567799999999998765
No 75
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=66.45 E-value=28 Score=36.31 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhcccccC--CCcEEEEEEccCc
Q 011505 196 VEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN--KDVVAAVILGTGS 243 (484)
Q Consensus 196 ~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~--~~~~iglIlGTG~ 243 (484)
.+.+.++....|++ ++.++|..+|++++..... ..+.+=+=+|-||
T Consensus 125 r~a~~~a~~~AGl~--~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT 172 (509)
T 2v7y_A 125 RQATKDAGRIAGLE--VERIINEPTAAALAYGLDKEEDQTILVYDLGGGT 172 (509)
T ss_dssp HHHHHHHHHHTTCE--EEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSC
T ss_pred HHHHHHHHHHcCCC--eEEEecCHHHHHHHHhhccCCCCEEEEEECCCCe
Confidence 35667777777775 4689999999988755432 2333333456665
No 76
>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=66.33 E-value=16 Score=38.08 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=33.5
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.++||.. +.+.+.+.+...+. ..|.+....+++.+|||++|+.+.
T Consensus 401 ~i~~~GG~a-~n~~~~q~~Adv~g--------~pV~~~~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 401 VLKADGGMA-QNRLFLKIQADLLG--------VPVAVPEVTETTALGAALMAGVGA 447 (495)
T ss_dssp CEEEESGGG-GCHHHHHHHHHHHT--------SCEEEESCSCHHHHHHHHHHHHHH
T ss_pred EEEEecccc-cCHHHHHHHHHHhC--------CeeEecCCcccHHHHHHHHHHhhc
Confidence 466777765 67888877666542 256555567899999999998764
No 77
>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*
Probab=64.15 E-value=22 Score=37.00 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=33.5
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.+.||.. +.+.+.+.+...+. ..|.+....+++.+|||++|+.+.
T Consensus 410 ~i~~~GG~a-~s~~~~Q~~Adv~g--------~pV~~~~~~e~~alGaA~la~~~~ 456 (503)
T 2w40_A 410 VLRCDGGMT-KNKPFMQFNSDIIN--------TKIEVSKYKEVTSLGAAVLAGLEV 456 (503)
T ss_dssp CEEEESGGG-GCHHHHHHHHHHHT--------SCEEEESCSCHHHHHHHHHHHHHT
T ss_pred eEEEeCccc-cCHHHHHHHHHHHC--------CeEEecCCCcchHHHHHHHHHHHh
Confidence 366677765 78888877666542 356555567899999999998765
No 78
>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}
Probab=63.09 E-value=20 Score=37.58 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
.|.++||.. +.|.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 428 ~i~~~GGga-ks~~~~Qi~ADvl----g----~pV~~~~~~e~~alGAA~lA~~a~ 474 (520)
T 4e1j_A 428 VLRVDGGMV-ASDWTMQRLSDLL----D----APVDRPVILETTALGVAWLAGSRA 474 (520)
T ss_dssp CEEEESGGG-GCHHHHHHHHHHH----T----SCEEEESCCCHHHHHHHHHHHHHH
T ss_pred eEEEeCccc-cCHHHHHHHHHHh----C----CeEEecCCCccHHHHHHHHHHHHc
Confidence 466666654 7888887766544 2 356555567899999999998765
No 79
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=62.90 E-value=29 Score=38.43 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=33.2
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE---EEcCChhH-HHHHHHHHHh
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI---EHSNDGSG-IGAALLAASH 477 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i---~~~~Dgs~-iGAAl~Aa~~ 477 (484)
..|++.|||+ .+..+++.+.+.+.+. + -.+.+ .+.+||++ +|+|++|+..
T Consensus 695 ~~VvLsGGVa-~N~~Lr~~L~~~l~~~-g----~~v~~p~~~p~~DgGialGQA~~a~~~ 748 (761)
T 3vth_A 695 NKVVLSGGSF-QNRYLLRRLIEKLSLS-G----FEVYSNSKVPCNDGGISLGQAVIANKI 748 (761)
T ss_dssp CEEEEESGGG-GSHHHHHHHHHHHHHT-T----CEEEECSSSCSSGGGHHHHHHHHHHHH
T ss_pred CEEEEECcHH-HHHHHHHHHHHHHHhC-C----CEEEecCCCCCCchHHHHHHHHHHHHH
Confidence 5799999998 4667888887776542 1 12222 23566665 9999988643
No 80
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=62.62 E-value=29 Score=36.65 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhcccccC----CCcEEEEEEccCc-ceEEE
Q 011505 196 VEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN----KDVVAAVILGTGS-NAAYV 248 (484)
Q Consensus 196 ~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~----~~~~iglIlGTG~-Na~yi 248 (484)
.+.+.+|....|++ ++.++|+.+|++++..... ....+=+=+|-|| ..+.+
T Consensus 155 r~a~~~A~~~AGl~--~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~ 210 (554)
T 1yuw_A 155 RQATKDAGTIAGLN--VLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSIL 210 (554)
T ss_dssp HHHHHHHHHTTTCE--EEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC--eEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEE
Confidence 45667777767775 4789999999988754332 2334444466666 33433
No 81
>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*
Probab=60.70 E-value=21 Score=37.63 Aligned_cols=32 Identities=13% Similarity=0.154 Sum_probs=25.3
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeee
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEV 129 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~ 129 (484)
.+||+||+|.|++|+++++.+|+ ++...+..+
T Consensus 10 ~~~lgID~GTts~Ka~l~d~~G~---vv~~~~~~~ 41 (538)
T 4bc3_A 10 RCCLGWDFSTQQVKVVAVDAELN---VFYEESVHF 41 (538)
T ss_dssp CEEEEEEECSSEEEEEEEETTCC---EEEEEEEEH
T ss_pred CEEEEEEEcCcCEEEEEECCCCC---EEEEEEEec
Confidence 38999999999999999998775 665544444
No 82
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Probab=59.12 E-value=21 Score=36.96 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=32.3
Q ss_pred EEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC-hhHHHHHHHHHHhc
Q 011505 423 VIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND-GSGIGAALLAASHS 478 (484)
Q Consensus 423 ~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D-gs~iGAAl~Aa~~~ 478 (484)
.|.++||.. +.+.+.+.+...+ + ..|......+ ++.+|||++|+++.
T Consensus 389 ~i~~~GG~a-~s~~~~Qi~Adv~----g----~pV~~~~~~e~~~alGAA~lA~~~~ 436 (484)
T 2itm_A 389 SVTLIGGGA-RSEYWRQMLADIS----G----QQLDYRTGGDVGPALGAARLAQIAA 436 (484)
T ss_dssp CEEEESGGG-CCHHHHHHHHHHH----C----CCEEEESCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEeccc-cCHHHHHHHHHHh----C----CeEEeCCCCCcccHHHHHHHHHHHc
Confidence 366666664 6787777766544 2 3565555666 48999999998765
No 83
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A*
Probab=59.11 E-value=26 Score=35.21 Aligned_cols=79 Identities=11% Similarity=0.023 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI 459 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i 459 (484)
..+.+-+..+|..|-+.++... .++.+. ..|.+.||+..++|.+.+.+.+++.-+-..+ .++.+
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~----A~~~~i----------~~IvftGgfla~n~~~~~~L~~~l~~ws~g~--~~~~~ 342 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMC----ALNENI----------DRVVFVGNFLRINMVSMKLLAYAMDFWSKGQ--LKALF 342 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHTC----------CCEEEESGGGCSSSHHHHHHHHHHHHHTTTS--CCEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHcCC----------CeEEEeCcccccCHHHHHHHHHHHhhhhcCC--eeEEE
Confidence 3455567777888766654321 122333 2499999988899999999999886432211 22322
Q ss_pred -EEcCChhHHHHHHHH
Q 011505 460 -EHSNDGSGIGAALLA 474 (484)
Q Consensus 460 -~~~~Dgs~iGAAl~A 474 (484)
....-.+.+|||+.+
T Consensus 343 ~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 343 LEHEGYFGAVGALLEL 358 (360)
T ss_dssp ETTTTCHHHHHHHHHH
T ss_pred cCCccHHHHHHHHHHh
Confidence 235556677777764
No 84
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=57.36 E-value=39 Score=36.11 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhcccccC---CCcEEEEEEccCc-ceEEEc
Q 011505 196 VEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN---KDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 196 ~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 249 (484)
.+.+.+|....|++ ++.++|+.+|++++..... +...+=+=+|-|| ..+.++
T Consensus 151 r~a~~~A~~~AGl~--v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~ 206 (605)
T 2kho_A 151 RQATKDAGRIAGLE--VKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (605)
T ss_dssp HHHHHHHHHTTTCE--EEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCc--eEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEE
Confidence 35667777767775 4789999999998765432 2333444467776 444443
No 85
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=52.84 E-value=13 Score=40.58 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred EEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCceeeeeee
Q 011505 97 YYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQRELGFTF 176 (484)
Q Consensus 97 ~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~~lGftF 176 (484)
++|||||-||..|++++ +++..++........+|+-+--...+.++..-|.....--.++-.. .-+.-||-.|
T Consensus 4 ~iGIDlGTtns~va~~~--~g~~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~-----~~KrllG~~~ 76 (675)
T 3d2f_A 4 PFGLDLGNNNSVLAVAR--NRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVA-----NLKRIIGLDY 76 (675)
T ss_dssp CEEEECCSSEEEEEEEE--TTEEEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEEC-----CHHHHTTCBT
T ss_pred EEEEEcCCCcEEEEEEE--CCeeEEEECCCCCcccceEEEECCCcEEecHHHHHhhhhChHhHHH-----HHHHHhCCCC
Q ss_pred e----------eeeeeeecCceEE------------------------------------------------ECccHHHH
Q 011505 177 S----------FPVMQTSINTGTL------------------------------------------------VGRDVVEE 198 (484)
Q Consensus 177 S----------fPv~q~~~~~G~l------------------------------------------------~G~dv~~~ 198 (484)
+ +|..-....+|.. -+..=.+.
T Consensus 77 ~d~~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a 156 (675)
T 3d2f_A 77 HHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYN 156 (675)
T ss_dssp TCTTHHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHH
T ss_pred CcHHHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHH
Q ss_pred HHHHHHhcCCCceEEEEEechHHHHhcccc---------cCCCcEEEEEEccCc
Q 011505 199 LSRAMAKQGLDMSVSALVNDTVGTLAGGRY---------TNKDVVAAVILGTGS 243 (484)
Q Consensus 199 L~~al~r~gl~v~v~alvNDtvatlla~~y---------~~~~~~iglIlGTG~ 243 (484)
+.+|....|+++ +.|+|+.+|+.++... ..+..++=+=+|-||
T Consensus 157 ~~~Aa~~AGl~~--~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT 208 (675)
T 3d2f_A 157 IADAARIAGLNP--VRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSS 208 (675)
T ss_dssp HHHHHHHTTCEE--EEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSC
T ss_pred HHHHHHHcCCce--EEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCc
No 86
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}
Probab=52.31 E-value=43 Score=32.69 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=40.4
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
.+-+||+|-.++|..+++......+++....+...+-+.+.. +. .++-.+...+++..|.+.
T Consensus 5 ~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 68 (315)
T 3mdq_A 5 RIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKGFITEEAMDRALDTLKKFRVI 68 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGTCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccCCcCHHHHHHHHHHHHHHHHH
Confidence 578999999999999999865444444433222333333321 11 456678888888888654
No 87
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Probab=51.99 E-value=47 Score=34.26 Aligned_cols=76 Identities=14% Similarity=0.113 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCC
Q 011505 385 ELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSND 464 (484)
Q Consensus 385 ~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~D 464 (484)
.++++|++=-|.-....+-.+-...+.. ...|.++||.. +.+.+.+.+...+. ..|... ..+
T Consensus 366 ~l~RAvlEgia~~~r~~~~~l~~~~g~~--------~~~i~~~GGga-ks~~~~Qi~ADvlg--------~pV~~~-~~e 427 (489)
T 2uyt_A 366 ELARCIFDSLALLYADVLHELAQLRGED--------FSQLHIVGGGC-QNTLLNQLCADACG--------IRVIAG-PVE 427 (489)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CSEEEEESGGG-GCHHHHHHHHHHHT--------SEEEEC-CTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCEEEEeCChh-hhHHHHHHHHHHHC--------CeeecC-Ccc
Confidence 3445555544444444444443333431 13466667765 68877766665442 244432 368
Q ss_pred hhHHHHHHHHHHhc
Q 011505 465 GSGIGAALLAASHS 478 (484)
Q Consensus 465 gs~iGAAl~Aa~~~ 478 (484)
++.+|||++|+.+.
T Consensus 428 ~~alGaa~~A~~a~ 441 (489)
T 2uyt_A 428 ASTLGNIGIQLMTL 441 (489)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HhHHHHHHHHHHHc
Confidence 99999987776543
No 88
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*
Probab=51.39 E-value=43 Score=35.29 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=34.1
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEEcCChhHHHHHHHHHHhc
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEHSNDGSGIGAALLAASHS 478 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~~~ 478 (484)
..|.++||.. +.+.+.+.+...+ + ..|.+....+++.+|||++|+++.
T Consensus 444 ~~i~~~GG~a-ks~~~~Qi~ADv~----g----~pV~~~~~~e~~alGAA~lA~~a~ 491 (554)
T 3l0q_A 444 DTMMASGGGT-KNPIFVQEHANAT----G----CAMLLPEESEAMLLGSAMMGTVAA 491 (554)
T ss_dssp CEEEEESGGG-GCHHHHHHHHHHH----C----CEEEEESCSCHHHHHHHHHHHHHT
T ss_pred CEEEEeCccc-cCHHHHHHHHHhh----C----CeEEecCCCcchHHHHHHHHHHHc
Confidence 3577777754 7888877666543 2 245555578899999999999865
No 89
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=50.78 E-value=31 Score=36.20 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=45.5
Q ss_pred eeecccccCCCCCceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 80 MIISYVDNLPTGDEKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 80 Mlpt~v~~lP~G~E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
|-|.+.. |.-...-.+-+||+|-.++|..+++..+....++........+-+.+.. +. .++-.+...+++..|.+.
T Consensus 2 ~~~~~~~--~~~~~~~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g~Ls~eai~r~~~~L~~F~~~ 79 (508)
T 3hi0_A 2 MTRSEAQ--GRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVL 79 (508)
T ss_dssp --CCCCS--SSCTTCCCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCccccc--cccccCCeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 4566643 3333344789999999999999998865433444332222333333321 11 456778888899998654
No 90
>3nuw_A 2-OXO-3-deoxygalactonate kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.09A {Klebsiella pneumoniae} PDB: 3r1x_A*
Probab=50.41 E-value=18 Score=35.45 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=31.3
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHH
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKF 154 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~f 154 (484)
..+|++|=|.||||+-+++ +| .++.+ ..-+..++.-...++-.-+.+.+.++
T Consensus 6 ~~~IavDWGTs~lRa~l~~-~g---~vl~~----~~~~~Gv~~~~~~~f~~~l~~~~~~w 57 (295)
T 3nuw_A 6 ARYIAIDWGSTNLRAWLYQ-GE---ECLES----RQSEAGVTRLNGRSPAAVLAEITQHW 57 (295)
T ss_dssp CEEEEEEECSSCEEEEEEE-TT---EEEEE----EEESCCTTCCTTCCHHHHHHHHTTTT
T ss_pred ccEEEEEecchheeeeeec-CC---ceehh----hcCCCchhhcCcccHHHHHHHHHHHh
Confidence 3799999999999999998 54 36543 23344444333333334444444444
No 91
>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}
Probab=48.39 E-value=16 Score=38.02 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHH-HHHHhcccCCccEEEEEcCChhHHHHHHHHHH
Q 011505 398 AAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENT-LEELLGEELFKNIVIEHSNDGSGIGAALLAAS 476 (484)
Q Consensus 398 ~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~-l~~l~~~~~~~~v~i~~~~Dgs~iGAAl~Aa~ 476 (484)
+|-.+.-++..+... ..|.++||.. +.|.+.+.+-.. + + ..|.+....+++.+|||++|++
T Consensus 374 ia~~~r~~l~~~~~~---------~~i~~~GG~a-~s~~w~Qi~ADv~~----g----~pV~~~~~~e~~alGAA~lA~~ 435 (482)
T 3h6e_A 374 AALVADTALDLIGST---------GRILVEGRFA-EADVFVRALASLRP----D----CAVYTANAHNDVSFGALRLIDP 435 (482)
T ss_dssp HHHHHHHHHHHTTCC---------SEEEEESGGG-GCHHHHHHHHHHST----T----SEEEEESSCCCTTGGGHHHHCT
T ss_pred HHHHHHHHHHHhcCC---------CeEEEeCCcc-cCHHHHHHHhhhcC----C----CeEEEcCCCchHHHHHHHHhCc
Confidence 455556666666542 3577777764 688887776654 3 2 3565555788999999999987
Q ss_pred h
Q 011505 477 H 477 (484)
Q Consensus 477 ~ 477 (484)
.
T Consensus 436 a 436 (482)
T 3h6e_A 436 G 436 (482)
T ss_dssp T
T ss_pred c
Confidence 6
No 92
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=47.74 E-value=99 Score=26.40 Aligned_cols=22 Identities=27% Similarity=0.256 Sum_probs=18.4
Q ss_pred eeEEEEEeCCceEEEEEEEeCC
Q 011505 95 GTYYALDLGGTNFRVLRVHLGG 116 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g 116 (484)
|.+||||+|-..+=|++-+..+
T Consensus 3 ~~iLglD~G~kriGvAvsd~~~ 24 (138)
T 1nu0_A 3 GTLMAFDFGTKSIGVAVGQRIT 24 (138)
T ss_dssp CEEEEEECCSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCEEEEEEEcCCC
Confidence 5799999999988888877655
No 93
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=46.93 E-value=39 Score=29.76 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=19.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCc
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKG 118 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~ 118 (484)
.+|+||-|=|+.=.++++..|+.
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~~ 24 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGRQ 24 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETTE
T ss_pred EEEEEccCCCCeeEEEEEecCCe
Confidence 47999999999999999987753
No 94
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Probab=45.60 E-value=39 Score=35.29 Aligned_cols=41 Identities=22% Similarity=0.110 Sum_probs=29.9
Q ss_pred CCC--ceEEEEEechHHHHhcccccCCCcEEEEEEccCcceEEE
Q 011505 207 GLD--MSVSALVNDTVGTLAGGRYTNKDVVAAVILGTGSNAAYV 248 (484)
Q Consensus 207 gl~--v~v~alvNDtvatlla~~y~~~~~~iglIlGTG~Na~yi 248 (484)
|++ +.|++-.-|+.+++++..-..+ ..+.+++||+.-....
T Consensus 230 Gl~~g~pV~~g~~D~~aa~~g~g~~~~-g~~~~s~GTs~~~~~~ 272 (511)
T 3hz6_A 230 GFVSGTPVLCGLGDAGAATLGVGVLDD-EDAYLHLGTTGWLARL 272 (511)
T ss_dssp CCCTTCEEECCEEHHHHHHHHTTCCST-TCEEEEESSSEEEEEE
T ss_pred CCCCCCeEEEECchHHHHHHhCCCCCC-CcEEEEecchhhheee
Confidence 774 6778888999999998754443 3468899998654444
No 95
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*
Probab=45.25 E-value=46 Score=32.54 Aligned_cols=62 Identities=11% Similarity=0.178 Sum_probs=38.1
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
.+-+||+|-+++|+.+++..+....++....+...+-+.+.. +. .++-.+...+++..|.+.
T Consensus 13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~~L~~f~~~ 76 (315)
T 1t6c_A 13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGRLQEDRIEETIQVLKEYKKL 76 (315)
T ss_dssp EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeecCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 688999999999999999864433334332222222232211 11 345667778888888654
No 96
>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}
Probab=44.62 E-value=15 Score=36.43 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=32.7
Q ss_pred eeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHH
Q 011505 95 GTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFV 155 (484)
Q Consensus 95 G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl 155 (484)
..+|+||=|.||||+-+++-+|+ ++.+ .+-+..++.-...++-+-+.+.+.++.
T Consensus 7 ~~~IavDWGTSnlRa~l~~~~g~---vl~~----~~~~~Gv~~~~~~~f~~~l~~l~~~w~ 60 (330)
T 3t69_A 7 GYYAAVDWGTSSFRLWIIGEDGA---VLAE----RRSAEGMTTAAKTGFHTILDGHLAAVS 60 (330)
T ss_dssp -CEEEEEECSSCEEEEEECTTSC---EEEE----EEESCCHHHHHHHCHHHHHHHHHHHTT
T ss_pred CCEEEEEecchheehheecCCCC---chhh----hcCCcchhhcCcccHHHHHHHHHHHhh
Confidence 46999999999999998876553 6543 233444432222334444555555554
No 97
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=42.01 E-value=1.3e+02 Score=28.98 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEEEE
Q 011505 382 TIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVIEH 461 (484)
Q Consensus 382 ~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i~~ 461 (484)
+.+-++.+|.+|-+.++.. ..+..+. ..|.+.||...++|.+++.+.++++.+ ..++..
T Consensus 212 Iaasl~~sV~~~I~~la~~----~a~~~~i----------~~Vvf~Gg~l~~n~~l~~~l~~~~~~~-------~~~~~~ 270 (287)
T 2ews_A 212 KLAAVIGVVGEVVTTMAIT----VAREFKT----------ENIVYIGSSFHNNALLRKVVEDYTVLR-------GCKPYY 270 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHTTC----------CEEEEESGGGTTCHHHHHHHHHHHHHT-------TCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhCCC----------CeEEEeCCchhcCHHHHHHHHHHHhhC-------CceEEE
Confidence 4456777777776555432 1222332 259999997789999999998866431 233444
Q ss_pred cCChhHHHH
Q 011505 462 SNDGSGIGA 470 (484)
Q Consensus 462 ~~Dgs~iGA 470 (484)
-+++...||
T Consensus 271 p~~~~~~gA 279 (287)
T 2ews_A 271 VENGAFSGA 279 (287)
T ss_dssp CTTGGGHHH
T ss_pred CCCccHHHH
Confidence 455555443
No 98
>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}
Probab=36.58 E-value=1.5e+02 Score=28.91 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=63.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccC-----cchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGT-----SDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~-----~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
.+|+||-.....-+++++- ++ ++.... ....... .|- ...--..+...|++.+++.+... ++..
T Consensus 7 ~iLgIdts~~~~svAl~~~-~~---i~~~~~--~~~~~~~-gGv~p~~a~~~H~~~l~~~i~~~L~~ag~~~----~did 75 (334)
T 3eno_A 7 IVLGLEGTAHTISCGIIDE-SR---ILAMES--SMYRPKT-GGIRPLDAAVHHSEVIDTVISRALEKAKISI----HDID 75 (334)
T ss_dssp EEEEEECSSSEEEEEEEES-SC---CCEEEE--EECCCSS-CSCCHHHHHHHHHHHHHHHHHHHHHHHTCCG----GGCC
T ss_pred eEEEEECCCcCeEEEEEEC-CE---EEEEEE--Eeecccc-CCcCcchHHHHHHHHHHHHHHHHHHHcCCCH----HHCC
Confidence 5899999988999999973 32 443222 2221111 110 11122455566666677665442 3455
Q ss_pred eeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcCCCceEEEEEechHHHHhccccc-CCCcEEEEEEccCcce
Q 011505 171 ELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYT-NKDVVAAVILGTGSNA 245 (484)
Q Consensus 171 ~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~-~~~~~iglIlGTG~Na 245 (484)
.+++|. .|=-.+ |..+|....+-|..++ ++|+. -+|-=-+.+++..|. ..+..+.+++.=|...
T Consensus 76 ~Iav~~-gPG~~t----~lrvg~~~ak~La~~~---~~Pl~---~v~hl~aHa~sa~~~s~~~~pl~L~vsGg~t~ 140 (334)
T 3eno_A 76 LIGFSM-GPGLAP----SLRVTATAARTISVLT---GKPII---GVNHPLGHIEIGRRVTGAIDPVMLYVSGGNTQ 140 (334)
T ss_dssp EEEEEC-SSSCHH----HHHHHHHHHHHHHHHH---TCCCE---EECHHHHHHHHHHHHHTCSSCEEEEESSSCEE
T ss_pred EEEEEc-CCCCcc----hHHHHHHHHHHHhhcc---CCCeE---EeccHHHHHHHHHhcCCCCCCEEEEEECCCcE
Confidence 666663 121111 1114555666666666 77752 345444444443332 1112266777655533
No 99
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Probab=36.38 E-value=48 Score=32.61 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=33.9
Q ss_pred ceeeEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHH
Q 011505 93 EKGTYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAK 153 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~ 153 (484)
+.+.++.+|+||.++=+++++++++. ++... ...+| -.++++.++|++.++.
T Consensus 188 ~~~~vlVvDIGgGTtDv~vi~~~~g~--~v~~~--s~~~~-----lGg~~i~~~I~~~i~~ 239 (346)
T 2fsj_A 188 QPGYGVVIDVGSRTTDVLTINLMDME--PVVEL--SFSLQ-----IGVGDAISALSRKIAK 239 (346)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTE--ECGGG--CEEES-----CCHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCcEEEEEEEecCCE--EEeec--CCCcc-----hhHHHHHHHHHHHHHH
Confidence 44778999999999999999986541 22110 12222 2356778888776543
No 100
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14
Probab=34.22 E-value=25 Score=34.18 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.0
Q ss_pred ceeeEEEEEeCCceEEEEEE
Q 011505 93 EKGTYYALDLGGTNFRVLRV 112 (484)
Q Consensus 93 E~G~~laiDlGGTnlRv~~V 112 (484)
....+++||+|+|..|+.++
T Consensus 18 ~~~~~iGIDiGsTt~K~V~~ 37 (287)
T 2ews_A 18 GSHMKVGIDAGGTLIKIVQE 37 (287)
T ss_dssp ---CEEEEEECSSEEEEEEE
T ss_pred CCCeEEEEEEChhhEEEEEE
Confidence 34589999999999999887
No 101
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=32.77 E-value=3.1e+02 Score=32.02 Aligned_cols=101 Identities=15% Similarity=0.128 Sum_probs=57.5
Q ss_pred eEEEEEeC-Cc----eEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 96 TYYALDLG-GT----NFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlG-GT----nlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
.+||||-| || -.++++|+-.|+ ++.... -++-|.. . ...+ .-.+.+.+|+.+++.+ ..
T Consensus 517 ~VlaldpG~r~~g~~g~k~a~vD~~G~---vl~~~~-i~~~~~~--~-~~~~---~a~~~l~~li~~~~~~-------vI 579 (1219)
T 3psi_A 517 KILSLTCGQGRFGADAIIAVYVNRKGD---FIRDYK-IVDNPFD--K-TNPE---KFEDTLDNIIQSCQPN-------AI 579 (1219)
T ss_dssp CEEEEECTTCCTTTTCEEEEEECTTSC---EEEEEE-ECSCTTC--S-SCSH---HHHHHHHHHHHHHCCS-------EE
T ss_pred eEEEecCCCCCCCCCceEEEEECCCCC---EEEEEE-EcCCCCC--h-hhHH---HHHHHHHHHHHHcCCc-------EE
Confidence 79999999 43 789999988875 554321 1222211 1 1111 1236788888887643 35
Q ss_pred eeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcC------CCceEEEEEechHHHHhccc
Q 011505 171 ELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQG------LDMSVSALVNDTVGTLAGGR 227 (484)
Q Consensus 171 ~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~g------l~v~v~alvNDtvatlla~~ 227 (484)
.||= +|- + =..+++.|.+.++++. .++. +.++||+.|.+.+..
T Consensus 580 aIGn-~sr--e----------t~~l~~~l~~~i~~~~~~~~~~~~i~-vviV~e~gAsvYsaS 628 (1219)
T 3psi_A 580 GING-PNP--K----------TQKFYKRLQEVLHKKQIVDSRGHTIP-IIYVEDEVAIRYQNS 628 (1219)
T ss_dssp EECC-SST--H----------HHHHHHHHHHHHHHTTCBCSSSCBCC-EEECCCTTHHHHHTS
T ss_pred EECC-CCH--H----------HHHHHHHHHHHHHhhccccccCCCcc-EEEECchHHHHHhcC
Confidence 5553 221 1 1225555666555432 2344 459999998877654
No 102
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}
Probab=32.57 E-value=76 Score=31.34 Aligned_cols=62 Identities=11% Similarity=0.200 Sum_probs=38.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCc-ceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKG-VGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~-~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
.+-+||+|-.++|..+.+...++ ..++....+...+-+.+.. +. .++-.+...+++..|.+.
T Consensus 17 ~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrLg~g~~~~g~ls~eai~r~~~aL~~f~~~ 81 (343)
T 3cer_A 17 TVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRLGQDVDKTHRFADEALERAYVAAREFAGV 81 (343)
T ss_dssp EEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCTTTTHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeCCCCccccCCcCHHHHHHHHHHHHHHHHH
Confidence 58899999999999999986322 3333322212222232211 11 456778888888888764
No 103
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=31.71 E-value=90 Score=32.61 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=40.3
Q ss_pred eEEEEEeCCceEEEEEEEeCCCcceeEEeeeeeeecCCCccc-cC-cchhHHHHHHHHHHHHhh
Q 011505 96 TYYALDLGGTNFRVLRVHLGGKGVGLINQEFAEVSIPPHLMT-GT-SDALFDYIAAELAKFVSQ 157 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~-~~-~~~lfd~Ia~~i~~fl~~ 157 (484)
.+-+||+|-.++|..+++..+...+++........+-+.+.. +. .++-.+...+++..|.+.
T Consensus 12 ~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g~Ls~eai~r~~~~L~~f~~~ 75 (513)
T 1u6z_A 12 EFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDNMLSEEAMTRGLNCLSLFAER 75 (513)
T ss_dssp CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTCCBCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccCCcCHHHHHHHHHHHHHHHHH
Confidence 588999999999999999865434444332222222233321 11 357788888999999764
No 104
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=31.40 E-value=2.7e+02 Score=31.91 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=56.7
Q ss_pred eEEEEEeC-Cc----eEEEEEEEeCCCcceeEEeeeeeeecCCCccccCcchhHHHHHHHHHHHHhhcccccccCCCCce
Q 011505 96 TYYALDLG-GT----NFRVLRVHLGGKGVGLINQEFAEVSIPPHLMTGTSDALFDYIAAELAKFVSQESEEFKLSPGRQR 170 (484)
Q Consensus 96 ~~laiDlG-GT----nlRv~~V~l~g~~~~i~~~~~~~~~ip~~~~~~~~~~lfd~Ia~~i~~fl~~~~~~~~~~~~~~~ 170 (484)
.++|||-| || -.++++|+-.|+ ++.... -++-|.. ... .+- -.+.+.+|+.+++.+ ..
T Consensus 520 ~VlaldpG~~~~~~~g~k~a~vd~~G~---~l~~~~-i~~~~~~--~~~-~~~---~~~~l~~li~~~~~~-------~I 582 (1030)
T 3psf_A 520 KILSLTCGQGRFGADAIIAVYVNRKGD---FIRDYK-IVDNPFD--KTN-PEK---FEDTLDNIIQSCQPN-------AI 582 (1030)
T ss_dssp CEEEEECTTCCTTTSCEEEEEECTTSC---EEEEEE-ECSCTTC--SSC-CHH---HHHHHHHHHHHHCCS-------EE
T ss_pred eEEEecCCCCCCCCCCeEEEEECCCCC---EEEEEE-EcCCCCC--hhh-HHH---HHHHHHHHHHHcCCc-------EE
Confidence 79999999 43 689999988775 554321 1222211 111 111 136788888887643 35
Q ss_pred eeeeeeeeeeeeeecCceEEECccHHHHHHHHHHhcC------CCceEEEEEechHHHHhccc
Q 011505 171 ELGFTFSFPVMQTSINTGTLVGRDVVEELSRAMAKQG------LDMSVSALVNDTVGTLAGGR 227 (484)
Q Consensus 171 ~lGftFSfPv~q~~~~~G~l~G~dv~~~L~~al~r~g------l~v~v~alvNDtvatlla~~ 227 (484)
.||= +|-- =..+++.+.+.++++. .++. +.++||+.|.+.+..
T Consensus 583 aIGn-~s~e------------t~~l~~~l~~~i~~~~~~~~~~~~i~-~~iV~e~gAsvYsaS 631 (1030)
T 3psf_A 583 GING-PNPK------------TQKFYKRLQEVLHKKQIVDSRGHTIP-IIYVEDEVAIRYQNS 631 (1030)
T ss_dssp EECC-SSTH------------HHHHHHHHHHHHHHTTCBCTTSCBCC-EEECCCTTHHHHHTS
T ss_pred EECC-CCHH------------HHHHHHHHHHHHHhhccccccCCCcc-EEEecchHHHHHHhh
Confidence 5552 1110 1224455556555432 2344 459999998876554
No 105
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=31.08 E-value=2e+02 Score=25.28 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.9
Q ss_pred eEEEEEeCCceEEEEEEEeCCC
Q 011505 96 TYYALDLGGTNFRVLRVHLGGK 117 (484)
Q Consensus 96 ~~laiDlGGTnlRv~~V~l~g~ 117 (484)
.+||||-|=++.=.++|+..++
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~ 23 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGK 23 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSS
T ss_pred EEEEEccccCceEEEEEEecCC
Confidence 4799999999999999999875
No 106
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=30.57 E-value=55 Score=35.54 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=31.4
Q ss_pred eEEEEeceeeccchhHHHHHHHHHHHHhcccCCccEEE---EEcCChhH-HHHHHHHHH
Q 011505 422 TVIAMDGGLYEHYAEYSKCLENTLEELLGEELFKNIVI---EHSNDGSG-IGAALLAAS 476 (484)
Q Consensus 422 ~~I~vdGsv~~~~p~f~~~l~~~l~~l~~~~~~~~v~i---~~~~Dgs~-iGAAl~Aa~ 476 (484)
..|++.|||+. +..+++.+.+.+. + -.+.+ .+.+||++ +|.|++|+.
T Consensus 601 ~~VvLsGGV~~-N~~Lre~L~~~l~---g----~~v~~p~~~p~~DnGiaLGQA~~a~~ 651 (657)
T 3ttc_A 601 TTLVFSGGVIH-NRLLRARLAHYLA---D----FTLLFPQSLPAGDGGLSLGQGVIAAA 651 (657)
T ss_dssp CEEEEESGGGG-CHHHHHHHHHHTT---T----SEEECCCSSCSSGGGHHHHHHHHHHH
T ss_pred CEEEEECcHHH-HHHHHHHHHHHhC---C----CEEEecCCCCCCcHHHHHHHHHHHHH
Confidence 58999999984 5667777776553 1 12222 24666666 999998864
No 107
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=29.89 E-value=24 Score=31.48 Aligned_cols=59 Identities=15% Similarity=0.244 Sum_probs=35.4
Q ss_pred ECccHHHHHHHHHHhcCCCce-EEEEEec-----hHHHHhcccccC-CCcEEEEEEccCcceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMS-VSALVND-----TVGTLAGGRYTN-KDVVAAVILGTGSNAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~-v~alvND-----tvatlla~~y~~-~~~~iglIlGTG~Na~yie 249 (484)
.|.++++.|.+.|+++|+.|. +-.--+| -.+..++.+... ....-=+|+|||.+.+..-
T Consensus 31 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCGTGiG~sIaA 96 (166)
T 3s5p_A 31 GGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCGTGIGISIAA 96 (166)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEESSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcCCcHHHHHHh
Confidence 477899999999998888752 2111122 233334444333 3344446999999988754
No 108
>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*
Probab=26.97 E-value=1.9e+02 Score=28.52 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=34.2
Q ss_pred eeeEEEEEeCCceEEEEEEEeCCC-cceeEEeeeee-eecCCCccccCcchhHHHHHHHHHHHHh
Q 011505 94 KGTYYALDLGGTNFRVLRVHLGGK-GVGLINQEFAE-VSIPPHLMTGTSDALFDYIAAELAKFVS 156 (484)
Q Consensus 94 ~G~~laiDlGGTnlRv~~V~l~g~-~~~i~~~~~~~-~~ip~~~~~~~~~~lfd~Ia~~i~~fl~ 156 (484)
.-++.+||+|-+.+|+.+.+.... ....+....+. .++...+-....+ -+-+.+.+.+|.+
T Consensus 2 ~~~~avID~GSns~Rl~I~~~~~~~~~~~i~~~~~~~~k~~~gLs~~~~~--~~~~~~~l~~f~~ 64 (353)
T 3aap_A 2 HSCIAVIDAGSTGSRLHIYSYDTDDTNTPIHIEEIWNKKIKPGFASIQPN--SVTIDAYLTMLLA 64 (353)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEECTTSCEEEEEEEEEEEESSCGGGSCCS--HHHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCeEEEEEEEcCCCCCceeEeeeeeeeccCCChhhcCCC--HHHHHHHHHHHHH
Confidence 346899999999999999988532 22233321111 3344444222111 3455666666654
No 109
>3tai_A DNA double-strand break repair protein NURA; recombination, hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB: 3tal_A* 3taz_A*
Probab=26.05 E-value=64 Score=33.14 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccccCCCCCceeeEEEEE
Q 011505 49 RTPAAKLKQVADAMTVEMHAGLASEGGSKLKMIISYVDNLPTGDEKGTYYALD 101 (484)
Q Consensus 49 ~~~~~~L~~i~~~f~~em~~gL~~~~~s~l~Mlpt~v~~lP~G~E~G~~laiD 101 (484)
-+|+..+.+|.+-+.+++++-...- ...|++++...+|+..+ ..++|+|
T Consensus 23 ~is~~~~~~I~~~L~~~l~~~~~~~---~ie~i~~~W~elPe~~~-~~iaAVD 71 (471)
T 3tai_A 23 LLSKQSIERITKILLDELENVRENE---QIRNIINSWKPLPSPEK-SSIYAVD 71 (471)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHTTCS---SHHHHHHTCBCCCCCCC-CEEEEEE
T ss_pred eccHhHHHHHHHHHHHHHHHHHhhh---chhhhhhhceECCCCCC-ceEEEec
Confidence 3899999999999999998877642 68899999999997754 4788988
No 110
>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A
Probab=25.00 E-value=1.1e+02 Score=30.86 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEeceeeccchhHHHHHHHHHH
Q 011505 389 IVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGGLYEHYAEYSKCLENTLE 446 (484)
Q Consensus 389 ~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGsv~~~~p~f~~~l~~~l~ 446 (484)
..+.|-++++++-.+++ +.. ..|++.||+-++.+.+++.+.+.+.
T Consensus 296 ~f~yri~k~Iga~aa~L----g~v---------DaIVfTGGIgens~~vR~~i~~~l~ 340 (391)
T 3r9p_A 296 VFTHRLRKYIGAYLAVL----GHT---------DVISFTAGIGENDAAVRRDAVSGME 340 (391)
T ss_dssp HHHHHHHHHHHHHHHHH----SSC---------CEEEEEHHHHHHCHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHh----CCC---------CEEEECcccccCCHHHHHHHHHHHH
Confidence 44556666666554443 332 5899999999999999999988764
No 111
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A
Probab=23.75 E-value=50 Score=32.76 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcceEEEEece
Q 011505 380 RKTIVELCNIVATRGARLAAAGILGVLKKMGRDAAKDGDKQKTVIAMDGG 429 (484)
Q Consensus 380 ~~~~~~i~~~V~~RaA~l~Aa~iaaii~~~~~~~~~~~~~~~~~I~vdGs 429 (484)
....+++|+.+.++..+.+..++..++.+.+- . .+|+.+||
T Consensus 245 ~~~~~~lA~~~~~~q~~~I~~av~~v~~~~~~--------~-~vv~aG~G 285 (334)
T 3cet_A 245 EIDAENIAKNYYELWKELILENVENVAEKYGS--------K-KVVITGLG 285 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------C-EEEEESTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------C-eEEEeCCc
Confidence 44566899999999999999999999987643 1 46777776
No 112
>1mul_A NS2, HU-2, DNA binding protein HU-alpha; histone-like; HET: DNA; 2.30A {Escherichia coli} SCOP: a.55.1.1 PDB: 2o97_A
Probab=23.10 E-value=1.3e+02 Score=23.23 Aligned_cols=36 Identities=11% Similarity=0.198 Sum_probs=31.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1mul_A 4 TQLIDVIAEKAELSKTQAKAALESTLAAITESLKEG 39 (90)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 466777777888999999999999999999999863
No 113
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=21.57 E-value=25 Score=31.47 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=36.2
Q ss_pred ECccHHHHHHHHHHhcCCCceEEEE-Eech-----HHHHhcccccC-CCcEEEEEEccCcceEEEc
Q 011505 191 VGRDVVEELSRAMAKQGLDMSVSAL-VNDT-----VGTLAGGRYTN-KDVVAAVILGTGSNAAYVE 249 (484)
Q Consensus 191 ~G~dv~~~L~~al~r~gl~v~v~al-vNDt-----vatlla~~y~~-~~~~iglIlGTG~Na~yie 249 (484)
.|.++++.|.+.|+++|+.|.=... -+|+ .+..++.+... +...-=+|+|||.+.+..-
T Consensus 30 aG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~sIaA 95 (169)
T 3ph3_A 30 GGYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAA 95 (169)
T ss_dssp GGHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHh
Confidence 4678999999999988876421100 1222 44444444433 3344446999999988754
No 114
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=21.47 E-value=25 Score=30.78 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=35.4
Q ss_pred CccHHHHHHHHHHhcCCCce-EEEEEech-----HHHHhcccccC-CCcEEEEEEccCcceEEEc
Q 011505 192 GRDVVEELSRAMAKQGLDMS-VSALVNDT-----VGTLAGGRYTN-KDVVAAVILGTGSNAAYVE 249 (484)
Q Consensus 192 G~dv~~~L~~al~r~gl~v~-v~alvNDt-----vatlla~~y~~-~~~~iglIlGTG~Na~yie 249 (484)
|.++++.|.+.|+++|+.|. +-.--.|+ .+..++.+... +...-=+|+|||.+.+..-
T Consensus 11 G~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g~~d~GIliCGTGiG~siaA 75 (149)
T 3he8_A 11 GYNLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSGECDRGIVICGTGLGISIAA 75 (149)
T ss_dssp GHHHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTTSSSEEEEEESSSHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEEcCCcHHHHHHh
Confidence 67889999999998887642 10001222 34444444433 3344446999999988754
No 115
>3rhi_A DNA-binding protein HU; structural genomics, center for structural genom infectious diseases, csgid; 2.48A {Bacillus anthracis} SCOP: a.55.1.1 PDB: 1hue_A 1huu_A
Probab=21.24 E-value=1.3e+02 Score=23.55 Aligned_cols=35 Identities=11% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 39 GIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 39 ~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 8 eLi~~ia~~~~lsk~~~~~~v~~~~~~i~~~L~~g 42 (93)
T 3rhi_A 8 ELIKNVAQNAEISQKEATVVVQTVVESITNTLAAG 42 (93)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 56666667778999999999999999999999863
No 116
>1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein-DN; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A
Probab=21.23 E-value=1.4e+02 Score=23.38 Aligned_cols=36 Identities=14% Similarity=0.162 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (94)
T 1p71_A 4 GELVDAVAEKASVTKKQADAVLTAALETIIEAVSSG 39 (94)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 356667777778999999999999999999999863
No 117
>1b8z_A Protein (histonelike protein HU); thermostable DNA binding protein; 1.60A {Thermotoga maritima} SCOP: a.55.1.1 PDB: 1riy_A
Probab=20.90 E-value=1.4e+02 Score=22.99 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=30.8
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 1b8z_A 4 KELIDRVAKKAGAKKKDVKLILDTILETITEALAKG 39 (90)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhCC
Confidence 356667777788999999999999999999999853
No 118
>2o97_B NS1, HU-1, DNA-binding protein HU-beta; heterodimer, DNA structure, DNA supercoiling, E DNA binding protein; 2.45A {Escherichia coli} SCOP: a.55.1.1
Probab=20.59 E-value=1.4e+02 Score=23.12 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=30.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCC
Q 011505 38 NGIMKEFEEKCRTPAAKLKQVADAMTVEMHAGLASE 73 (484)
Q Consensus 38 ~~~l~~~~~~~~~~~~~L~~i~~~f~~em~~gL~~~ 73 (484)
.++++.+.+...++..+...+.+.|.+.|.+.|...
T Consensus 4 ~eli~~ia~~~~ls~~~~~~~l~~~~~~i~~~L~~g 39 (90)
T 2o97_B 4 SQLIDKIAAGADISKAAAGRALDAIIASVTESLKEG 39 (90)
T ss_dssp HHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 466777777888999999999999999999999853
No 119
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=20.30 E-value=43 Score=32.98 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCceEEEEEechHHHHhcccccC---CCcEEEEEEccCc-ceEEEc
Q 011505 196 VEELSRAMAKQGLDMSVSALVNDTVGTLAGGRYTN---KDVVAAVILGTGS-NAAYVE 249 (484)
Q Consensus 196 ~~~L~~al~r~gl~v~v~alvNDtvatlla~~y~~---~~~~iglIlGTG~-Na~yie 249 (484)
.+.+.+++++.|++ ++.++|+.+|++++..... ..+.+=+=+|-|| ..+.++
T Consensus 151 r~~~~~a~~~aGl~--~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~ 206 (383)
T 1dkg_D 151 RQATKDAGRIAGLE--VKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIE 206 (383)
T ss_dssp HHHHHHHHHHTTCE--ESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHcCCc--eEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEE
Confidence 35566777767775 3568999999988654432 1233333356665 344333
Done!