BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011506
(484 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q04832|HEXP_LEIMA DNA-binding protein HEXBP OS=Leishmania major GN=HEXBP PE=4 SV=1
Length = 271
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 83/201 (41%), Gaps = 32/201 (15%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLK------- 275
+ GH ++DCP+ K G C KCG GH C R Y +
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGY 136
Query: 276 --EVQCYICRCFGHLC--CVNISDAV--PGEVSCFRCGQLGHTGLACARSRGETVEASPS 329
+ CY C GH+ C N G+ +C++CG GH C +G A
Sbjct: 137 SGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDR 196
Query: 330 SCYNCGAEGHFARECVSSSKV 350
CY CG GH +REC S+
Sbjct: 197 KCYKCGESGHMSRECPSAGST 217
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 37/205 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K + C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPNG 186
Query: 269 Y-SLDDLKEVQCYICRCFGHLC--CVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVE 325
+ +CY C GH+ C + G+ +C++CG+ GH C + G
Sbjct: 187 QGGYSGAGDRKCYKCGESGHMSRECPSAGSTGSGDRACYKCGKPGHISRECPEAGGSYGG 246
Query: 326 ASPS---SCYNCGAEGHFARECVSS 347
+ +CY CG GH +R+C SS
Sbjct: 247 SRGGGDRTCYKCGEAGHISRDCPSS 271
>sp|O65639|CSP1_ARATH Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=2 SV=1
Length = 299
Score = 75.9 bits (185), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 82/198 (41%), Gaps = 36/198 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD--------- 224
CYNCGE GH++ +C C+ CG H R C+ A +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 225 ----CFICKKGGHRAKDCPDKH-KSGFQNAQV------CLKCGDSGHDMFSCRNSYSLDD 273
C+ C GH A+DC K +G Q V C CGD GH C + +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 274 LKEV-----QCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASP 328
++ CY C GH+ + P C++CG GH C + RG +
Sbjct: 222 VRSGGGGSGTCYSCGGVGHIARDCATKRQP-SRGCYQCGGSGHLARDCDQ-RGSGGGGND 279
Query: 329 SSCYNCGAEGHFARECVS 346
++CY CG EGHFAREC S
Sbjct: 280 NACYKCGKEGHFARECSS 297
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 19/82 (23%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G TCY+CG GH+A +C A KR+ ++ C+ C GH A+DC
Sbjct: 228 GSGTCYSCGGVGHIARDC--ATKRQ-----------------PSRGCYQCGGSGHLARDC 268
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
+ G N C KCG GH
Sbjct: 269 DQRGSGGGGNDNACYKCGKEGH 290
Score = 39.7 bits (91), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 303 CFRCGQLGHTGLACARSRGETVEASPSS----CYNCGAEGHFARECVSSSKVRKR 353
C+ CG+LGH C G S CYNCG GHFAR+C S+ +R
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQR 156
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 303 CFRCGQLGHTGLACARS-----RGETVEASPSSCYNCGAEGHFARECVSSS 348
C+ CG GH C + RG T + CY CG GH AR+C S
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGAT-KGGNDGCYTCGDVGHVARDCTQKS 183
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 79/177 (44%), Gaps = 51/177 (28%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C ++ + C+ CG
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCD--LQEDEACYNCG------------------ 79
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 80 -RGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 129
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
D +V C+RCG+ GH + C+++ S +CY CG GH AREC
Sbjct: 130 ----QKDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARECT 173
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 42/147 (28%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 73 EACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD- 113
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
+ Q C CG+ GH D +V+CY C GH V I+ + E
Sbjct: 114 -----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSE 156
Query: 301 VSCFRCGQLGHTGLACARSRGETVEAS 327
V+C+RCG+ GH C T+EA+
Sbjct: 157 VNCYRCGESGHLAREC------TIEAT 177
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 90 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 146
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 147 VAINCS-------KTSEVNCYRCGESGH 167
Score = 33.5 bits (75), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 293 ISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+S ++P C+RCG+ GH C E +CYNCG GH A++C + R+
Sbjct: 46 VSSSLPD--ICYRCGESGHLAKDCDLQEDE-------ACYNCGRGGHIAKDCKEPKRERE 96
Query: 353 R 353
+
Sbjct: 97 Q 97
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 79/182 (43%), Gaps = 41/182 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 6 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICR 283
C+ C +GGH AKDC + + + Q C CG GH C D E +CY C
Sbjct: 66 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCG 116
Query: 284 CFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARE 343
FGH+ D +V C+RCG+ GH + C+++ S +CY CG GH ARE
Sbjct: 117 EFGHI----QKDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARE 163
Query: 344 CV 345
C
Sbjct: 164 CT 165
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 42/146 (28%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 66 ACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD-- 105
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ Q C CG+ GH D +V+CY C GH V I+ + EV
Sbjct: 106 ----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSEV 149
Query: 302 SCFRCGQLGHTGLACARSRGETVEAS 327
+C+RCG+ GH C T+EA+
Sbjct: 150 NCYRCGESGHLAREC------TIEAT 169
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 82 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 139 VAINCS-------KTSEVNCYRCGESGH 159
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 65/166 (39%), Gaps = 56/166 (33%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSG---------FQNAQ-----VCLKCGDSGHDMFSCRN 267
+ +CF C + GH A++CP G FQ +C +CG+SGH C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDC-- 60
Query: 268 SYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----------CF 304
DL+E CY C GH+ CC N PG ++ C+
Sbjct: 61 -----DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDHADEQKCY 113
Query: 305 RCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 350
CG+ GH C + + CY CG GH A C +S+V
Sbjct: 114 SCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV 149
Score = 33.1 bits (74), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 293 ISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+S ++P C+RCG+ GH C + +CYNCG GH A++C + R+
Sbjct: 39 VSSSLPD--ICYRCGESGHLAKDC--------DLQEDACYNCGRGGHIAKDCKEPKRERE 88
Query: 353 R 353
+
Sbjct: 89 Q 89
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 43/163 (26%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY CGE GH+A +C ++ K C+ CG +GGH AKDC +
Sbjct: 48 CYRCGESGHLAKDCD--LQEDKACYNCG-------------------RGGHIAKDCKEPK 86
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVS 302
+ + Q C CG GH C D E +CY C FGH+ D +V
Sbjct: 87 R---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI----QKDCT--KVK 131
Query: 303 CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
C+RCG+ GH + C+++ S +CY CG GH AREC
Sbjct: 132 CYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARECT 167
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 42/147 (28%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+ CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 67 KACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD- 107
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
+ Q C CG+ GH D +V+CY C GH V I+ + E
Sbjct: 108 -----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSE 150
Query: 301 VSCFRCGQLGHTGLACARSRGETVEAS 327
V+C+RCG+ GH C T+EA+
Sbjct: 151 VNCYRCGESGHLAREC------TIEAT 171
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 84 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 140
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 141 VAINCS-------KTSEVNCYRCGESGH 161
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 52/177 (29%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
D +V C+RCG+ GH + C+++ S +CY CG GH AREC
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARECT 172
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 42/146 (28%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD-- 112
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ Q C CG+ GH D +V+CY C GH V I+ + EV
Sbjct: 113 ----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSEV 156
Query: 302 SCFRCGQLGHTGLACARSRGETVEAS 327
+C+RCG+ GH C T+EA+
Sbjct: 157 NCYRCGESGHLAREC------TIEAT 176
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 63/173 (36%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 350
C+ CG+ GH C + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV 156
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 293 ISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+S ++P C+RCG+ GH C + +CYNCG GH A++C + R+
Sbjct: 46 VSSSLPD--ICYRCGESGHLAKDC--------DLQEDACYNCGRGGHIAKDCKEPKRERE 95
Query: 353 R 353
+
Sbjct: 96 Q 96
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 52/177 (29%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
D +V C+RCG+ GH + C+++ S +CY CG GH AREC
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARECT 172
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 42/146 (28%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD-- 112
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ Q C CG+ GH D +V+CY C GH V I+ + EV
Sbjct: 113 ----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSEV 156
Query: 302 SCFRCGQLGHTGLACARSRGETVEAS 327
+C+RCG+ GH C T+EA+
Sbjct: 157 NCYRCGESGHLAREC------TIEAT 176
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 63/173 (36%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 350
C+ CG+ GH C + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV 156
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 293 ISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+S ++P C+RCG+ GH C + +CYNCG GH A++C + R+
Sbjct: 46 VSSSLPD--ICYRCGESGHLAKDC--------DLQEDACYNCGRGGHIAKDCKEPKRERE 95
Query: 353 R 353
+
Sbjct: 96 Q 96
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 52/177 (29%)
Query: 177 DRGWQ--------TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
DRG+Q CY CGE GH+A +C + C+ C
Sbjct: 40 DRGFQFVSSSLPDICYRCGESGHLAKDCDL----------------------QEDACYNC 77
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHL 288
+GGH AKDC + + + Q C CG GH C D E +CY C FGH+
Sbjct: 78 GRGGHIAKDCKEPKR---EREQCCYNCGKPGHLARDC------DHADEQKCYSCGEFGHI 128
Query: 289 CCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
D +V C+RCG+ GH + C+++ S +CY CG GH AREC
Sbjct: 129 ----QKDCT--KVKCYRCGETGHVAINCSKT-------SEVNCYRCGESGHLARECT 172
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 42/146 (28%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNCG GH+A +C+ + ++ C C+ C K GH A+DC
Sbjct: 73 ACYNCGRGGHIAKDCKEPKREREQC------------------CYNCGKPGHLARDCD-- 112
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ Q C CG+ GH D +V+CY C GH V I+ + EV
Sbjct: 113 ----HADEQKCYSCGEFGHIQ---------KDCTKVKCYRCGETGH---VAINCSKTSEV 156
Query: 302 SCFRCGQLGHTGLACARSRGETVEAS 327
+C+RCG+ GH C T+EA+
Sbjct: 157 NCYRCGESGHLAREC------TIEAT 176
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 89 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 145
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 146 VAINCS-------KTSEVNCYRCGESGH 166
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 65/173 (37%), Gaps = 63/173 (36%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKS----------------GFQNAQ-----VCLKCGDSGH 260
+ +CF C + GH A++CP GFQ +C +CG+SGH
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGH 62
Query: 261 DMFSCRNSYSLDDLKEVQCYICRCFGHL-------------CCVNISDAVPGEVS----- 302
C DL+E CY C GH+ CC N PG ++
Sbjct: 63 LAKDC-------DLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGK--PGHLARDCDH 113
Query: 303 -----CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKV 350
C+ CG+ GH C + + CY CG GH A C +S+V
Sbjct: 114 ADEQKCYSCGEFGHIQKDCTKVK----------CYRCGETGHVAINCSKTSEV 156
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 293 ISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+S ++P C+RCG+ GH C + +CYNCG GH A++C + R+
Sbjct: 46 VSSSLPD--ICYRCGESGHLAKDC--------DLQEDACYNCGRGGHIAKDCKEPKRERE 95
Query: 353 R 353
+
Sbjct: 96 Q 96
>sp|P36627|BYR3_SCHPO Cellular nucleic acid-binding protein homolog
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=byr3 PE=4 SV=1
Length = 179
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 73/173 (42%), Gaps = 26/173 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGHRAKDCP 239
CYNCGE GH A C + C+ C H +C++ Q C+ C GH +DCP
Sbjct: 19 CYNCGENGHQAREC----TKGSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCP 74
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK------EVQCYICRCFGHLCCVNI 293
+ Q A+ C KCG GH CR + + + CY C +GH
Sbjct: 75 SS-PNPRQGAE-CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGH----QA 128
Query: 294 SDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVS 346
D G V C+ CG++GH C ++ + CY C GH A C S
Sbjct: 129 RDCTMG-VKCYSCGKIGHRSFECQQASDGQL------CYKCNQPGHIAVNCTS 174
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 63/151 (41%), Gaps = 38/151 (25%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ CG H R+C+K C+ C + GH+A +C + Q + C CG +GH + C
Sbjct: 19 CYNCGENGHQARECTKGSICYNCNQTGHKASECTEP-----QQEKTCYACGTAGHLVRDC 73
Query: 266 RNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVE 325
+S + E C++CG++GH C R+ G+
Sbjct: 74 PSSPNPRQGAE--------------------------CYKCGRVGHIARDC-RTNGQQSG 106
Query: 326 A------SPSSCYNCGAEGHFARECVSSSKV 350
S +CY CG+ GH AR+C K
Sbjct: 107 GRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
P R CY CG GH+A +CR+ + C+ CGS H R C+
Sbjct: 76 SPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGV 135
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C K GHR+ +C + Q+C KC GH +C
Sbjct: 136 KCYSCGKIGHRSFECQQA-----SDGQLCYKCNQPGHIAVNC 172
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 56/133 (42%), Gaps = 30/133 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC--------------SKAQD 224
+TCY CG GH+ +C S+ ++ C+ CG + H R C +
Sbjct: 58 KTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMN 117
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C+ C GH+A+DC K C CG GH F C+ + S L CY C
Sbjct: 118 CYACGSYGHQARDCTMGVK--------CYSCGKIGHRSFECQQA-SDGQL----CYKCNQ 164
Query: 285 FGHLCCVNISDAV 297
GH+ VN + V
Sbjct: 165 PGHI-AVNCTSPV 176
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 303 CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
C+ C Q GH C + E +CY CG GH R+C SS R+
Sbjct: 38 CYNCNQTGHKASECTEPQQE------KTCYACGTAGHLVRDCPSSPNPRQ 81
>sp|Q94C69|CSP3_ARATH Cold shock domain-containing protein 3 OS=Arabidopsis thaliana
GN=CSP3 PE=2 SV=1
Length = 301
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 78/205 (38%), Gaps = 42/205 (20%)
Query: 183 CYNCGEEGHMAVNC-------------RSAVKRKKPCFVCGSLEHGVRQCSKA------- 222
C+NCGE GHMA +C + C++CG + H R C ++
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 223 -----QDCFICKKGGHRAKDCPDKHKSGFQNAQV--------CLKCGDSGHDMFSCRNSY 269
+ C+ C + GH AKDC C CG GH CR +
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVGHFARDCRQNG 215
Query: 270 SLDDLKEVQ-CYICRCFGHLCCVNISDAVPGEV-----SCFRCGQLGHTGLACAR--SRG 321
+ CY C GH+ V S +P +C+ CG GH C R S
Sbjct: 216 GGNVGGGGSTCYTCGGVGHIAKVCTSK-IPSGGGGGGRACYECGGTGHLARDCDRRGSGS 274
Query: 322 ETVEASPSSCYNCGAEGHFARECVS 346
+ C+ CG EGHFAREC S
Sbjct: 275 SGGGGGSNKCFICGKEGHFARECTS 299
>sp|P53849|GIS2_YEAST Zinc finger protein GIS2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GIS2 PE=1 SV=1
Length = 153
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 68/163 (41%), Gaps = 38/163 (23%)
Query: 183 CYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
CYNC + GH+ +C K C+ CG H +C+ Q CF C + GH +++CP+
Sbjct: 25 CYNCNKPGHVQTDCTMPRTVEFKQCYNCGETGHVRSECT-VQRCFNCNQTGHISRECPEP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K+ + C KCG H + D +KE D + G +
Sbjct: 84 KKTSRFSKVSCYKCGGPNH--------MAKDCMKE------------------DGISG-L 116
Query: 302 SCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
C+ CGQ GH C R CYNC GH +++C
Sbjct: 117 KCYTCGQAGHMSRDCQNDR---------LCYNCNETGHISKDC 150
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 62/151 (41%), Gaps = 31/151 (20%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDM 262
+K C+VCG + H C + C+ C K GH DC F+ C CG++GH
Sbjct: 3 QKACYVCGKIGHLAEDCDSERLCYNCNKPGHVQTDCTMPRTVEFKQ---CYNCGETGHVR 59
Query: 263 FSCRNSYSLDDLKEVQ-CYICRCFGHLCCVNISDAVP--------GEVSCFRCGQLGHTG 313
C VQ C+ C GH IS P +VSC++CG H
Sbjct: 60 SEC----------TVQRCFNCNQTGH-----ISRECPEPKKTSRFSKVSCYKCGGPNHMA 104
Query: 314 LACARSRGETVEASPSSCYNCGAEGHFAREC 344
C + G S CY CG GH +R+C
Sbjct: 105 KDCMKEDG----ISGLKCYTCGQAGHMSRDC 131
Score = 37.0 bits (84), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 274 LKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYN 333
+ + CY+C GHL ++ E C+ C + GH C R TVE CYN
Sbjct: 1 MSQKACYVCGKIGHL-----AEDCDSERLCYNCNKPGHVQTDCTMPR--TVEF--KQCYN 51
Query: 334 CGAEGHFARECV 345
CG GH EC
Sbjct: 52 CGETGHVRSECT 63
>sp|Q8R1J3|ZCHC9_MOUSE Zinc finger CCHC domain-containing protein 9 OS=Mus musculus
GN=Zcchc9 PE=2 SV=1
Length = 273
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 31/133 (23%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCR-------- 171
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVS---CFRCGQLGHTGLACARSRGETVEASPSSC 331
N+ A+ GE CF CG++GH +C + V A SC
Sbjct: 172 ----------------ANVDPAL-GEFPFAKCFVCGEMGHLSRSCP-DNTKGVYADGGSC 213
Query: 332 YNCGAEGHFAREC 344
CG+ HF ++C
Sbjct: 214 KLCGSVEHFKKDC 226
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
C + GH ++ CPD K + + C CG H CR + + D + V
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRIITV 238
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 25/110 (22%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGE 300
K ++ +NA VC C GH + C D+ G
Sbjct: 119 KRQAAKKNAMVCFHCRQPGHGIADCPAVLESQDM------------------------GT 154
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASP-SSCYNCGAEGHFARECVSSSK 349
C+RCG H C + + P + C+ CG GH +R C ++K
Sbjct: 155 GICYRCGSTEHEMSKCRANVDPALGEFPFAKCFVCGEMGHLSRSCPDNTK 204
>sp|Q8WW36|ZCH13_HUMAN Zinc finger CCHC domain-containing protein 13 OS=Homo sapiens
GN=ZCCHC13 PE=2 SV=1
Length = 166
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 37/139 (26%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
TCY CGE G A NC + G++ C+ C + GH AKDC D
Sbjct: 46 TCYCCGESGRNAKNC----------VLLGNI------------CYNCGRSGHIAKDCKDP 83
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
+ + Q C CG GH C D KE +CY C GH+ +V
Sbjct: 84 KR---ERRQHCYTCGRLGHLARDC------DRQKEQKCYSCGKLGHI------QKDCAQV 128
Query: 302 SCFRCGQLGHTGLACARSR 320
C+RCG++GH + C+++R
Sbjct: 129 KCYRCGEIGHVAINCSKAR 147
Score = 40.4 bits (93), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDC 238
A +C
Sbjct: 139 VAINC 143
>sp|P40507|AIR1_YEAST Protein AIR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR1 PE=1 SV=1
Length = 360
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C NC + GH+ NC + C CG ++ H + C KA C C GH CP K
Sbjct: 76 CNNCSQRGHLKRNCPHVI-----CTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHK 130
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEV 301
K F C C H C + + LK N D V
Sbjct: 131 WKKVF-----CTLCNSKRHSRERCPSIWRSYLLKTKD------------ANQGDFDFQTV 173
Query: 302 SCFRCGQLGHTGLACARSRGETVEASPSSCYNCG 335
C+ CG GH G CA R V + S + CG
Sbjct: 174 FCYNCGNAGHFGDDCAERRSSRVPNTDGSAF-CG 206
>sp|P24736|GAG_HV1U4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag PE=1 SV=3
Length = 493
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
Score = 35.4 bits (80), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 298 PGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
P + CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 381 PRRIKCFNCGKEGHLAKNCRAPRKK-------GCWKCGKEGHQMKDC 420
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF--ICKKG 231
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + F I G
Sbjct: 387 NPIRKGTIKCFNCGKEGHIARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQFFRQILASG 444
Query: 232 GHRAKDC 238
GH A+
Sbjct: 445 GHEARQL 451
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 396 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDCRN 432
Score = 36.6 bits (83), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Query: 299 GEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
G + CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 392 GTIKCFNCGKEGHIARNCRAPRKK-------GCWKCGQEGHQMKDC 430
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 346 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 298 PGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
P + CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 381 PRRIKCFNCGKEGHLAKNCRAPRKK-------GCWKCGKEGHQMKDC 420
>sp|Q8N567|ZCHC9_HUMAN Zinc finger CCHC domain-containing protein 9 OS=Homo sapiens
GN=ZCCHC9 PE=2 SV=2
Length = 271
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CF 226
C++C + GH +C +A++ + C+ CGS EH + +C D CF
Sbjct: 128 MVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCF 187
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEV 277
+C + GH ++ CPD K + + C CG H C S + + + V
Sbjct: 188 VCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSERMVTV 238
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 7/111 (6%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY--SLD 272
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +L
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALG 179
Query: 273 DLKEVQCYICRCFGHL---CCVNISDAVPGEVSCFRCGQLGHTGLACARSR 320
+ +C++C GHL C N C CG + H C S+
Sbjct: 180 EFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPESQ 230
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 6/112 (5%)
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRCFGHLC--CVNISDAVP 298
K ++ +NA VC C GH + C + D+ CY C H C D
Sbjct: 119 KRQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAL 178
Query: 299 GEVS---CFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSS 347
GE CF CG++GH +C + + A C CG+ H ++C S
Sbjct: 179 GEFPFAKCFVCGEMGHLSRSCP-DNPKGLYADGGGCKLCGSVEHLKKDCPES 229
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H C++ V CFVCG + H R C
Sbjct: 144 PAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNP 203
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
+ C +C H KDCP+ S
Sbjct: 204 KGLYADGGGCKLCGSVEHLKKDCPESQNS 232
>sp|O12157|GAG_HV192 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag PE=3 SV=3
Length = 496
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGK 433
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 387 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQVKDCT 424
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|P0C1K7|GAG_HV19N Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag PE=3 SV=2
Length = 497
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
Score = 35.8 bits (81), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH +EC
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKECT 428
>sp|Q9QC00|GAG_HV197 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag PE=3 SV=2
Length = 495
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
Score = 34.3 bits (77), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 385 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDC 421
>sp|P20873|GAG_HV1JR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag PE=3 SV=3
Length = 504
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--MQRGNFRNQRKNVKCFNCGKEGHIARNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKEC 426
Score = 36.6 bits (83), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH +EC
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKECT 427
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 435
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH +EC
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKEC 427
>sp|Q2KIN0|ZCHC7_BOVIN Zinc finger CCHC domain-containing protein 7 OS=Bos taurus
GN=ZCCHC7 PE=2 SV=2
Length = 546
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 61/168 (36%), Gaps = 36/168 (21%)
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
G H +K C C K GH +K+CP Q + C C + GH ++C +
Sbjct: 228 GRWTHRYYTANKNVTCRNCDKCGHLSKNCPFP-----QKVRPCCLCSERGHLQYACPARF 282
Query: 270 SLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACAR----------- 318
L C + H C S C RC +GH AC
Sbjct: 283 CLG------CSLPMSSTHRCLERAS----WRKRCDRCDMIGHYADACPEIWRQYHLTTKP 332
Query: 319 -----SRGETVEASPSSCYNCGAEGHFARECVSSSKVRKRNIDASTPT 361
+ + +++ CYNCG EGH+ EC +R + + PT
Sbjct: 333 GPPKKPKTPSGQSTLVYCYNCGQEGHYGHECTE-----RRMFNQTFPT 375
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFL 434
Score = 38.9 bits (89), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 43/101 (42%), Gaps = 13/101 (12%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--MQRGNFRNQRKNVKCFNCGKEGHIARNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC---RNSYSLDDLKEVQ 278
K G C KCG GH M C + ++ +DL +Q
Sbjct: 408 PRKKG------CWKCGKEGHQMKECTERQANFLREDLAFLQ 442
Score = 37.0 bits (84), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
V CF CG+ GH C R + C+ CG EGH +EC
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKEC 426
>sp|P04594|GAG_HV1MA Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag PE=3 SV=3
Length = 505
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 442
Score = 38.5 bits (88), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + ++ G + K CF C K GH A++C
Sbjct: 356 CQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 415
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 416 KKG------CWKCGKEGHQMKDC 432
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 396 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDCT 433
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFF 431
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 387 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQVKDC 423
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH + C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQVKDC 423
>sp|B1AX39|ZCHC7_MOUSE Zinc finger CCHC domain-containing protein 7 OS=Mus musculus
GN=Zcchc7 PE=2 SV=1
Length = 541
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKEVQCYICRC 284
C C K GH +K+CP Q + C C + GH + C Y LD C +
Sbjct: 238 CRNCDKRGHLSKNCPLP-----QKVRACCLCSERGHLQYGCPARYCLD------CSLPMS 286
Query: 285 FGHLCCVNISDAVPGEVSCFRCGQLGHTGLACAR----------------SRGETVEASP 328
H C +S C RC +GH AC + + +++
Sbjct: 287 SNHRCFERLS----WRKRCDRCDMIGHHADACPEIWRQYHLTTKPGPPKKPKTPSGQSAL 342
Query: 329 SSCYNCGAEGHFARECVSSSKVRKRNIDASTPT 361
CYNC +GH+ EC +R + + PT
Sbjct: 343 VYCYNCAQKGHYGHECTE-----RRMFNQTFPT 370
>sp|P04592|GAG_HV1EL Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag PE=3 SV=3
Length = 500
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 154 TVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
T ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 371 TNSVTTAMMQRGNFKGPRKII-------KCFNCGKEGHIAKNCRAP--RKKGCWRCGKEG 421
Query: 214 HGVRQCSKAQDCFI 227
H ++ C++ Q F+
Sbjct: 422 HQLKDCTERQANFL 435
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH + C
Sbjct: 410 RKKG------CWRCGKEGHQLKDC 427
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 391 IKCFNCGKEGHIAKNCRAPRKK-------GCWRCGKEGHQLKDCT 428
>sp|O89939|GAG_HV1SE Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag PE=3 SV=3
Length = 495
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 437
Score = 36.6 bits (83), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 427
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 391 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDCT 428
>sp|Q73367|GAG_HV1B9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag PE=3 SV=3
Length = 500
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 39.7 bits (91), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGKEGHQMKDCT 427
>sp|P12493|GAG_HV1N5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag PE=1 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--IQKGNFRNQRKTVKCFNCGKEGHIAKNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGKEGHQMKDCT 427
>sp|P35962|GAG_HV1Y2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag PE=1 SV=2
Length = 500
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGKEGHQMKDCT 427
>sp|P12494|GAG_HV1J3 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JH32) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQANFLGK 436
Score = 38.9 bits (89), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTIMMQRGNFRNQRKIIKCFNCGKEGHLARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDC 426
>sp|P03348|GAG_HV1BR Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag PE=1 SV=3
Length = 512
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKDCT 427
>sp|Q9QBY4|GAG_HV196 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag PE=3 SV=2
Length = 495
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 383 KIVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 385 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKDC 421
>sp|Q9QBZ6|GAG_HV1MP Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag PE=3 SV=2
Length = 492
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 36.2 bits (82), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
Score = 35.0 bits (79), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 385 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKDC 421
>sp|O89291|GAG_HV193 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag PE=3 SV=3
Length = 492
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 431
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 421
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 385 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGREGHQMKDCT 422
>sp|Q12476|AIR2_YEAST Protein AIR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=AIR2 PE=1 SV=1
Length = 344
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 75/218 (34%), Gaps = 63/218 (28%)
Query: 156 EISDNIVLRKLLRGP-RYF-------DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCF 207
E++ N + LRG RYF D C NC + GH+ +C + C
Sbjct: 28 EVNSNPNELRALRGQGRYFGVSDDDKDAIKEAAPKCNNCSQRGHLKKDCPHII-----CS 82
Query: 208 VCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CG+ + H R C KA C C + GH CP K
Sbjct: 83 YCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPHK------------------------- 117
Query: 267 NSYSLDDLKEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLAC---ARSRGET 323
K+VQC +C+ H S RC + + +++ +
Sbjct: 118 -------WKKVQCTLCKSKKH--------------SKERCPSIWRAYILVDDNEKAKPKV 156
Query: 324 VEASPSSCYNCGAEGHFARECVSSSKVRKRNIDASTPT 361
+ CYNCG +GHF +C R N D S T
Sbjct: 157 LPFHTIYCYNCGGKGHFGDDCKEKRSSRVPNEDGSAFT 194
>sp|P20889|GAG_HV1OY Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag PE=3 SV=3
Length = 499
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNSVTVM--MQKGNFKNQRKTVKCFNCGKEGHIAKNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGREGHQMKDC 425
Score = 34.7 bits (78), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 389 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGREGHQMKDCT 426
>sp|O93182|GAG_HV190 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag PE=3 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
R + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 RKFVKCFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 437
Score = 35.8 bits (81), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 427
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 391 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGREGHQMKDC 427
>sp|Q9QSR4|GAG_HV1VI Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag PE=3 SV=3
Length = 491
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 386 CFNCGKEGHIARNCRAP--RKKGCWKCGREGHQMKDCTERQANFLGK 430
Score = 35.4 bits (80), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 420
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 384 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGREGHQMKDCT 421
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 398 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 440
Score = 38.9 bits (89), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + ++ G + K CF C K GH A++C
Sbjct: 356 CQGVGGPSHKARVLAEAMSQATNSTAAIMMQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 415
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 416 KKG------CWKCGKEGHQMKDC 432
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 396 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDC 432
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFF 429
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 23/79 (29%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGH-----------FARECVSSSK 349
+ CF CG+ GH C R + C+ CG EGH F RE ++S +
Sbjct: 385 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDCSERQANFFREVLASQQ 437
Query: 350 VRKRNID-----ASTPTFR 363
R A++PT R
Sbjct: 438 REARKFSSEQTRANSPTSR 456
>sp|Q75001|GAG_HV1ET Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag PE=3 SV=3
Length = 504
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 431
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+A CF C K GH A++C K G C KCG GH M C
Sbjct: 385 RAIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 387 IKCFNCGKEGHLARNCRAPRKK-------GCWKCGKEGHQMKDCT 424
>sp|Q70622|GAG_HV1LW Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag PE=1 SV=3
Length = 500
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGKEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 390 VKCFNCGKEGHIARNCRAPRKK-------GCWKCGKEGHQMKDCT 427
>sp|P03349|GAG_HV1A2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag PE=3 SV=3
Length = 502
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 394 CFNCGKEGHIAKNCRAP--RKKGCWRCGREGHQMKDCTERQANFLGK 438
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P + ++ G R K CF C K GH AK+C
Sbjct: 352 CQGVGGPGHKARVLAEAMSQVTNPANIM--MQRGNFRNQRKTVKCFNCGKEGHIAKNCRA 409
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH M C
Sbjct: 410 PRKKG------CWRCGREGHQMKDC 428
Score = 34.3 bits (77), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECV 345
V CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 392 VKCFNCGKEGHIAKNCRAPRKK-------GCWRCGREGHQMKDCT 429
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWRCGKEGHQLKDCTERQANFL 435
Score = 36.6 bits (83), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + ++ G + K CF C K GH AK+C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQATNSVTTAMMQRGNFKGPRKIIKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C +CG GH + C
Sbjct: 410 RKKG------CWRCGKEGHQLKDC 427
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFAREC 344
+ CF CG+ GH C R + C+ CG EGH ++C
Sbjct: 391 IKCFNCGKEGHIAKNCRAPRKK-------GCWRCGKEGHQLKDC 427
>sp|Q966L9|GLH2_CAEEL ATP-dependent RNA helicase glh-2 OS=Caenorhabditis elegans GN=glh-2
PE=1 SV=1
Length = 974
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 22/138 (15%)
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC---------RNSYSLDDL 274
+CF C++ GHR+ DCP+ K + +VC C GH+ C RN ++
Sbjct: 372 NCFNCQQPGHRSNDCPEPKKE--REPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGFG 429
Query: 275 KEVQCYICRCFGHLCCVNISDAVPGEVSCFRCGQLGHTGLACARSRGETVEASPSSCYNC 334
++ G + CF C GH C P C+NC
Sbjct: 430 GGNDGGFGG---GNAEGFGNNEERGPMKCFNCKGEGHRSAECPE--------PPRGCFNC 478
Query: 335 GAEGHFARECVSSSKVRK 352
G +GH + EC + +K R+
Sbjct: 479 GEQGHRSNECPNPAKPRE 496
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+CF C++ GHR+ DCP+ K + +VC C GH+ C
Sbjct: 258 NCFNCQQPGHRSNDCPEPKKE--REPRVCYNCQQPGHNSRDC 297
Score = 35.0 bits (79), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 302 SCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRK 352
+CF C Q GH C + E P CYNC GH +R+C K R+
Sbjct: 258 NCFNCQQPGHRSNDCPEPK---KEREPRVCYNCQQPGHNSRDCPEERKPRE 305
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 19/69 (27%)
Query: 177 DRGWQT--CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
DRG + C+NC + GH + +C K ++P + C+ C++ GH
Sbjct: 251 DRGERNNNCFNCQQPGHRSNDCPEPKKEREP-----------------RVCYNCQQPGHN 293
Query: 235 AKDCPDKHK 243
++DCP++ K
Sbjct: 294 SRDCPEERK 302
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 48.9 bits (115), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 434
Score = 40.0 bits (92), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
Score = 37.0 bits (84), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 22/130 (16%)
Query: 301 VSCFRCGQLGHTGLACARSRGETVEASPSSCYNCGAEGHFARECVSSSKVRKRNIDASTP 360
V CF CG+ GH C R + C+ CG EGH ++C R D + P
Sbjct: 390 VKCFNCGKEGHIAKNCRAPRKK-------GCWKCGKEGHQMKDCTERQANFLRE-DLAFP 441
Query: 361 TFRPHRENKDHSGIKSAPHDLGKVHKRKKTQHEERGIMTSRKSKQRGGWITDDPGDISYG 420
+ + + + + S +V +R E G D G +S+
Sbjct: 442 QGKARKFSSEQTRANSPIRRERQVWRRDNNSLSEAG--------------ADRQGTVSFS 487
Query: 421 KPKRNHWRSP 430
P+ W+ P
Sbjct: 488 FPQITLWQRP 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 197,751,327
Number of Sequences: 539616
Number of extensions: 9042429
Number of successful extensions: 70094
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 553
Number of HSP's that attempted gapping in prelim test: 59070
Number of HSP's gapped (non-prelim): 9460
length of query: 484
length of database: 191,569,459
effective HSP length: 121
effective length of query: 363
effective length of database: 126,275,923
effective search space: 45838160049
effective search space used: 45838160049
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)