Query 011507
Match_columns 484
No_of_seqs 412 out of 2982
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:07:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011507.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011507hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2484 GTPase [General functi 100.0 7.4E-96 2E-100 725.6 26.3 421 1-439 1-433 (435)
2 KOG2423 Nucleolar GTPase [Gene 100.0 1.3E-61 2.8E-66 477.8 21.4 304 92-419 147-463 (572)
3 KOG1424 Predicted GTP-binding 100.0 8.1E-48 1.7E-52 392.9 22.9 288 133-421 162-481 (562)
4 PRK09563 rbgA GTPase YlqF; Rev 100.0 1.1E-42 2.4E-47 347.9 28.7 254 134-417 13-281 (287)
5 TIGR03596 GTPase_YlqF ribosome 100.0 1.9E-42 4.1E-47 344.4 27.9 251 134-414 10-275 (276)
6 COG1161 Predicted GTPases [Gen 100.0 7.3E-43 1.6E-47 353.6 24.4 260 130-418 19-299 (322)
7 cd04178 Nucleostemin_like Nucl 100.0 8.1E-34 1.7E-38 262.9 17.7 171 147-317 1-172 (172)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 4E-33 8.6E-38 254.5 18.2 157 138-317 1-157 (157)
9 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 3.5E-28 7.5E-33 218.1 17.3 140 136-320 2-141 (141)
10 KOG2485 Conserved ATP/GTP bind 100.0 3.4E-27 7.5E-32 229.7 21.2 249 136-412 37-318 (335)
11 cd01849 YlqF_related_GTPase Yl 99.9 3.6E-27 7.9E-32 214.8 16.6 146 147-317 1-155 (155)
12 cd01856 YlqF YlqF. Proteins o 99.9 3.5E-26 7.5E-31 211.8 19.5 158 133-318 7-171 (171)
13 cd01859 MJ1464 MJ1464. This f 99.9 9.2E-25 2E-29 198.8 17.9 154 135-317 1-156 (156)
14 PF08701 GN3L_Grn1: GNL3L/Grn1 99.9 2.8E-25 6E-30 176.2 9.8 73 16-89 1-73 (79)
15 COG1159 Era GTPase [General fu 99.9 9.5E-26 2.1E-30 219.7 6.9 175 261-482 5-189 (298)
16 cd01855 YqeH YqeH. YqeH is an 99.9 1.5E-24 3.3E-29 203.9 14.3 152 135-317 24-190 (190)
17 PRK13796 GTPase YqeH; Provisio 99.9 6.4E-23 1.4E-27 211.7 17.7 156 134-320 58-223 (365)
18 TIGR03597 GTPase_YqeH ribosome 99.9 1.1E-22 2.5E-27 209.5 17.7 159 132-320 50-217 (360)
19 COG1160 Predicted GTPases [Gen 99.9 3.2E-22 6.9E-27 205.0 17.8 213 129-369 67-303 (444)
20 PRK12289 GTPase RsgA; Reviewed 99.9 9E-22 1.9E-26 201.2 15.3 145 142-322 86-239 (352)
21 TIGR00157 ribosome small subun 99.8 5.1E-20 1.1E-24 180.2 16.9 145 142-322 33-186 (245)
22 TIGR03594 GTPase_EngA ribosome 99.8 3.8E-19 8.2E-24 187.8 16.7 209 131-368 64-296 (429)
23 PRK00093 GTP-binding protein D 99.8 1.2E-18 2.6E-23 184.4 19.7 209 132-368 67-297 (435)
24 PRK12288 GTPase RsgA; Reviewed 99.8 9.7E-19 2.1E-23 178.9 18.2 146 140-322 115-272 (347)
25 PRK00098 GTPase RsgA; Reviewed 99.8 3.8E-19 8.2E-24 179.0 13.7 145 140-320 75-229 (298)
26 cd01854 YjeQ_engC YjeQ/EngC. 99.8 1.4E-18 3.1E-23 173.9 17.1 146 139-320 72-226 (287)
27 KOG1423 Ras-like GTPase ERA [C 99.8 6.6E-20 1.4E-24 178.0 6.8 196 261-480 71-286 (379)
28 PRK03003 GTP-binding protein D 99.8 2.1E-18 4.6E-23 184.2 17.5 211 131-369 103-336 (472)
29 PRK09518 bifunctional cytidyla 99.8 1.4E-17 3E-22 186.1 22.1 211 131-369 340-575 (712)
30 TIGR00436 era GTP-binding prot 99.8 6.5E-19 1.4E-23 175.0 8.3 171 263-481 1-180 (270)
31 COG1160 Predicted GTPases [Gen 99.7 1.1E-18 2.4E-23 179.1 6.6 196 263-464 4-222 (444)
32 PRK15494 era GTPase Era; Provi 99.7 6E-18 1.3E-22 173.2 7.9 174 261-481 51-232 (339)
33 PRK12298 obgE GTPase CgtA; Rev 99.7 1.5E-17 3.2E-22 172.8 7.8 178 263-481 160-349 (390)
34 PRK00089 era GTPase Era; Revie 99.7 2.6E-17 5.7E-22 165.1 8.0 173 261-481 4-187 (292)
35 PRK01889 GTPase RsgA; Reviewed 99.6 3.6E-15 7.8E-20 153.6 13.9 143 142-320 109-260 (356)
36 COG1162 Predicted GTPases [Gen 99.6 1.4E-14 3.1E-19 142.9 17.0 174 142-351 76-272 (301)
37 PRK09602 translation-associate 99.6 2.8E-15 6E-20 156.1 9.1 210 263-481 2-287 (396)
38 PF02421 FeoB_N: Ferrous iron 99.5 8E-15 1.7E-19 133.2 6.2 103 263-366 1-116 (156)
39 COG0218 Predicted GTPase [Gene 99.5 3.6E-14 7.8E-19 132.0 6.4 110 261-370 23-150 (200)
40 COG0486 ThdF Predicted GTPase 99.4 1.7E-13 3.7E-18 141.4 8.0 112 258-369 213-338 (454)
41 COG1084 Predicted GTPase [Gene 99.4 8.5E-13 1.8E-17 130.5 11.5 107 261-368 167-293 (346)
42 PTZ00258 GTP-binding protein; 99.4 2.5E-12 5.4E-17 132.9 10.9 82 261-343 20-125 (390)
43 PF01926 MMR_HSR1: 50S ribosom 99.4 6.5E-13 1.4E-17 114.5 5.2 59 264-322 1-62 (116)
44 cd01900 YchF YchF subfamily. 99.3 2.8E-12 6E-17 127.1 8.8 77 265-342 1-101 (274)
45 PRK09601 GTP-binding protein Y 99.3 3.6E-12 7.8E-17 130.4 9.7 81 262-343 2-106 (364)
46 cd01899 Ygr210 Ygr210 subfamil 99.3 3.4E-12 7.4E-17 129.3 6.2 78 265-343 1-109 (318)
47 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 3.8E-12 8.2E-17 120.3 5.4 60 263-322 1-64 (196)
48 KOG1191 Mitochondrial GTPase [ 99.3 9.1E-12 2E-16 128.6 8.1 85 259-343 265-358 (531)
49 COG0536 Obg Predicted GTPase [ 99.3 1E-11 2.2E-16 123.4 7.6 111 263-374 160-294 (369)
50 PF03193 DUF258: Protein of un 99.2 1.7E-11 3.8E-16 111.6 8.1 94 195-322 2-102 (161)
51 PRK12297 obgE GTPase CgtA; Rev 99.2 4.6E-11 9.9E-16 125.3 10.3 116 263-380 159-298 (424)
52 COG1163 DRG Predicted GTPase [ 99.2 1.3E-11 2.8E-16 121.8 5.0 84 261-345 62-152 (365)
53 PRK12299 obgE GTPase CgtA; Rev 99.2 7E-11 1.5E-15 120.8 10.2 107 261-368 157-284 (335)
54 TIGR03594 GTPase_EngA ribosome 99.2 2.2E-11 4.8E-16 128.7 6.2 106 264-369 1-121 (429)
55 PRK12296 obgE GTPase CgtA; Rev 99.2 3.5E-11 7.6E-16 127.9 7.7 83 260-343 157-246 (500)
56 KOG1489 Predicted GTP-binding 99.2 4.8E-11 1E-15 117.3 7.1 121 260-381 194-338 (366)
57 TIGR03156 GTP_HflX GTP-binding 99.1 8.7E-11 1.9E-15 120.9 8.5 107 261-368 188-314 (351)
58 PRK05291 trmE tRNA modificatio 99.1 1.1E-10 2.4E-15 124.0 8.8 111 259-369 212-335 (449)
59 COG0012 Predicted GTPase, prob 99.1 6E-11 1.3E-15 119.9 6.2 80 262-342 2-106 (372)
60 cd01853 Toc34_like Toc34-like 99.1 4.8E-10 1E-14 110.0 12.2 62 259-320 28-92 (249)
61 TIGR02729 Obg_CgtA Obg family 99.1 2.1E-10 4.6E-15 117.0 9.8 83 261-344 156-246 (329)
62 TIGR00450 mnmE_trmE_thdF tRNA 99.1 1.7E-10 3.6E-15 122.2 9.0 123 246-369 188-324 (442)
63 PRK04213 GTP-binding protein; 99.1 4.4E-10 9.5E-15 106.1 10.3 56 262-319 9-64 (201)
64 PRK03003 GTP-binding protein D 99.1 3.7E-10 8.1E-15 120.9 9.6 109 261-369 37-160 (472)
65 TIGR03598 GTPase_YsxC ribosome 99.1 3.3E-10 7.2E-15 105.3 8.1 61 261-321 17-78 (179)
66 PRK00093 GTP-binding protein D 99.1 2.9E-10 6.3E-15 120.4 8.5 106 263-368 2-122 (435)
67 PRK09518 bifunctional cytidyla 99.1 5.1E-10 1.1E-14 125.5 10.9 174 181-369 209-397 (712)
68 KOG1491 Predicted GTP-binding 99.1 4.9E-10 1.1E-14 111.1 9.1 80 261-341 19-122 (391)
69 TIGR00991 3a0901s02IAP34 GTP-b 99.0 4.4E-10 9.5E-15 112.5 8.1 76 243-320 21-99 (313)
70 TIGR00092 GTP-binding protein 99.0 6.6E-10 1.4E-14 113.9 9.6 81 262-342 2-106 (368)
71 COG0370 FeoB Fe2+ transport sy 99.0 8.2E-10 1.8E-14 118.9 9.3 104 262-366 3-119 (653)
72 COG1159 Era GTPase [General fu 99.0 2.3E-09 5E-14 105.4 11.6 111 125-259 65-176 (298)
73 cd04163 Era Era subfamily. Er 99.0 7.4E-10 1.6E-14 99.5 7.2 107 262-368 3-124 (168)
74 cd01898 Obg Obg subfamily. Th 99.0 7.8E-10 1.7E-14 100.9 6.8 80 264-344 2-89 (170)
75 cd01894 EngA1 EngA1 subfamily. 99.0 7.3E-10 1.6E-14 99.3 6.4 104 266-369 1-119 (157)
76 PRK00454 engB GTP-binding prot 99.0 9.1E-10 2E-14 103.2 6.6 60 261-320 23-83 (196)
77 PRK11058 GTPase HflX; Provisio 99.0 9.2E-10 2E-14 116.0 7.3 106 263-369 198-323 (426)
78 PRK09554 feoB ferrous iron tra 98.9 3.2E-09 7E-14 119.2 10.5 121 262-383 3-142 (772)
79 cd01895 EngA2 EngA2 subfamily. 98.9 2.6E-09 5.6E-14 96.9 7.9 108 262-369 2-127 (174)
80 cd04164 trmE TrmE (MnmE, ThdF, 98.9 2.4E-09 5.2E-14 95.7 7.4 106 263-368 2-120 (157)
81 cd01881 Obg_like The Obg-like 98.9 2.5E-09 5.4E-14 97.9 6.6 76 267-343 1-84 (176)
82 cd04166 CysN_ATPS CysN_ATPS su 98.9 2.7E-09 5.8E-14 101.9 6.4 76 264-342 1-109 (208)
83 TIGR00993 3a0901s04IAP86 chlor 98.9 8.3E-09 1.8E-13 111.3 10.1 64 258-321 114-180 (763)
84 KOG1490 GTP-binding protein CR 98.9 1E-09 2.2E-14 113.5 2.8 61 261-322 167-230 (620)
85 cd01896 DRG The developmentall 98.9 5.1E-09 1.1E-13 101.9 7.5 80 264-344 2-88 (233)
86 cd01879 FeoB Ferrous iron tran 98.8 8.8E-09 1.9E-13 92.5 5.9 100 267-367 1-113 (158)
87 cd01897 NOG NOG1 is a nucleola 98.7 1.3E-08 2.7E-13 92.8 6.0 55 264-319 2-59 (168)
88 cd01878 HflX HflX subfamily. 98.7 3.8E-08 8.2E-13 93.2 8.0 59 261-320 40-102 (204)
89 cd01876 YihA_EngB The YihA (En 98.7 2.9E-08 6.3E-13 89.4 6.3 56 265-320 2-58 (170)
90 TIGR00231 small_GTP small GTP- 98.7 3.3E-08 7.1E-13 87.4 6.2 55 263-318 2-61 (161)
91 COG2262 HflX GTPases [General 98.7 3.5E-08 7.6E-13 100.8 7.2 111 261-372 191-321 (411)
92 cd04104 p47_IIGP_like p47 (47- 98.7 5.5E-08 1.2E-12 92.1 8.1 106 263-368 2-120 (197)
93 TIGR00436 era GTP-binding prot 98.7 1.8E-07 3.9E-12 93.0 11.8 106 129-259 63-168 (270)
94 PF04548 AIG1: AIG1 family; I 98.7 2.8E-08 6E-13 95.3 5.5 63 263-325 1-67 (212)
95 cd01887 IF2_eIF5B IF2/eIF5B (i 98.7 3.7E-08 8E-13 89.5 6.1 101 264-368 2-115 (168)
96 cd01886 EF-G Elongation factor 98.6 1.3E-07 2.9E-12 94.0 8.7 118 264-384 1-146 (270)
97 cd04171 SelB SelB subfamily. 98.6 8E-08 1.7E-12 86.7 6.2 78 263-343 1-84 (164)
98 cd01890 LepA LepA subfamily. 98.6 6.1E-08 1.3E-12 89.3 5.4 76 264-342 2-99 (179)
99 cd00880 Era_like Era (E. coli 98.6 9.1E-08 2E-12 84.6 6.2 103 267-369 1-118 (163)
100 cd00881 GTP_translation_factor 98.6 1.4E-07 3E-12 87.2 7.5 103 264-369 1-128 (189)
101 PRK00089 era GTPase Era; Revie 98.5 5.4E-07 1.2E-11 90.4 11.6 106 129-258 68-174 (292)
102 cd01851 GBP Guanylate-binding 98.5 1.4E-07 3E-12 91.4 6.4 61 262-322 7-75 (224)
103 COG3596 Predicted GTPase [Gene 98.5 8.4E-08 1.8E-12 93.4 4.8 64 260-324 37-104 (296)
104 PRK15494 era GTPase Era; Provi 98.5 5.6E-07 1.2E-11 92.5 11.2 107 128-259 114-220 (339)
105 PRK15467 ethanolamine utilizat 98.5 2E-07 4.4E-12 85.1 6.8 72 264-344 3-75 (158)
106 PRK09866 hypothetical protein; 98.5 2.9E-07 6.3E-12 99.3 8.8 73 307-379 230-317 (741)
107 cd04112 Rab26 Rab26 subfamily. 98.5 6.5E-08 1.4E-12 90.8 3.1 54 263-317 1-60 (191)
108 cd01889 SelB_euk SelB subfamil 98.5 1.8E-07 3.8E-12 87.9 5.9 103 263-368 1-133 (192)
109 TIGR02836 spore_IV_A stage IV 98.5 4.8E-07 1E-11 93.2 9.3 145 261-405 16-237 (492)
110 PF00350 Dynamin_N: Dynamin fa 98.5 1.4E-07 3.1E-12 86.2 4.5 32 265-296 1-32 (168)
111 TIGR00437 feoB ferrous iron tr 98.5 2.7E-07 5.9E-12 101.3 7.4 98 269-367 1-111 (591)
112 cd04145 M_R_Ras_like M-Ras/R-R 98.5 1E-06 2.2E-11 79.6 9.9 56 262-319 2-62 (164)
113 cd01884 EF_Tu EF-Tu subfamily. 98.5 4.2E-07 9.1E-12 86.1 7.6 105 262-369 2-132 (195)
114 cd04155 Arl3 Arl3 subfamily. 98.4 3.4E-07 7.5E-12 83.8 6.6 68 247-318 2-69 (173)
115 PLN03118 Rab family protein; P 98.4 4.9E-07 1.1E-11 86.3 7.9 81 260-343 12-95 (211)
116 PF10662 PduV-EutP: Ethanolami 98.4 1.3E-06 2.8E-11 78.1 9.9 96 129-252 47-143 (143)
117 PRK05506 bifunctional sulfate 98.4 3E-07 6.4E-12 102.1 7.0 109 258-369 20-171 (632)
118 cd04156 ARLTS1 ARLTS1 subfamil 98.4 3.9E-07 8.4E-12 82.2 6.4 78 264-344 1-78 (160)
119 PF00009 GTP_EFTU: Elongation 98.4 1.3E-06 2.9E-11 81.7 10.3 99 133-255 81-187 (188)
120 PRK12317 elongation factor 1-a 98.4 3.9E-07 8.5E-12 96.5 7.2 107 260-369 4-153 (425)
121 KOG1486 GTP-binding protein DR 98.4 1.1E-07 2.4E-12 91.0 2.7 82 261-343 61-149 (364)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.4 9E-07 2E-11 81.7 8.6 78 262-344 15-93 (174)
123 smart00178 SAR Sar1p-like memb 98.4 6.7E-07 1.5E-11 83.5 7.8 79 261-344 16-95 (184)
124 cd01861 Rab6 Rab6 subfamily. 98.4 5.2E-07 1.1E-11 81.4 6.1 53 264-317 2-59 (161)
125 cd00154 Rab Rab family. Rab G 98.4 5E-07 1.1E-11 80.3 5.8 78 263-343 1-82 (159)
126 cd01891 TypA_BipA TypA (tyrosi 98.4 9.8E-07 2.1E-11 83.0 7.9 103 263-368 3-130 (194)
127 cd01863 Rab18 Rab18 subfamily. 98.4 7.7E-07 1.7E-11 80.4 6.9 56 263-318 1-60 (161)
128 cd04158 ARD1 ARD1 subfamily. 98.4 6.9E-07 1.5E-11 82.0 6.2 72 264-342 1-75 (169)
129 PF05049 IIGP: Interferon-indu 98.3 7.4E-07 1.6E-11 91.7 6.9 61 261-322 34-101 (376)
130 CHL00071 tufA elongation facto 98.3 8.5E-07 1.8E-11 93.4 7.3 107 260-369 10-142 (409)
131 cd01860 Rab5_related Rab5-rela 98.3 1.1E-06 2.3E-11 79.5 7.0 55 263-317 2-60 (163)
132 cd01866 Rab2 Rab2 subfamily. 98.3 1.1E-06 2.5E-11 80.3 7.1 77 263-342 5-85 (168)
133 cd04154 Arl2 Arl2 subfamily. 98.3 8.2E-07 1.8E-11 81.7 6.0 57 261-318 13-69 (173)
134 cd01894 EngA1 EngA1 subfamily. 98.3 5.9E-06 1.3E-10 73.7 11.3 91 132-252 63-155 (157)
135 cd04163 Era Era subfamily. Er 98.3 6.6E-06 1.4E-10 73.6 11.4 96 134-253 71-167 (168)
136 cd01868 Rab11_like Rab11-like. 98.3 1.4E-06 3E-11 79.1 7.0 56 263-318 4-63 (165)
137 PRK09866 hypothetical protein; 98.3 4.8E-06 1E-10 90.1 11.8 98 135-254 248-352 (741)
138 TIGR00484 EF-G translation elo 98.3 2.1E-06 4.5E-11 96.3 9.4 119 262-383 10-156 (689)
139 cd04168 TetM_like Tet(M)-like 98.3 2.5E-06 5.5E-11 83.2 8.8 116 264-382 1-144 (237)
140 KOG2486 Predicted GTPase [Gene 98.3 1.1E-06 2.4E-11 85.6 6.1 61 261-321 135-197 (320)
141 cd04107 Rab32_Rab38 Rab38/Rab3 98.3 1.5E-06 3.3E-11 82.2 6.9 77 263-342 1-82 (201)
142 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.3 1.7E-06 3.7E-11 80.6 7.1 104 262-368 3-122 (183)
143 cd01888 eIF2_gamma eIF2-gamma 98.3 6.9E-06 1.5E-10 78.1 11.4 106 133-256 94-200 (203)
144 cd04175 Rap1 Rap1 subgroup. T 98.3 2E-06 4.3E-11 78.1 7.3 55 263-319 2-61 (164)
145 PRK12739 elongation factor G; 98.3 1.5E-06 3.3E-11 97.4 7.5 119 262-383 8-154 (691)
146 PF00009 GTP_EFTU: Elongation 98.3 2.2E-07 4.8E-12 87.1 0.7 105 261-368 2-135 (188)
147 cd04151 Arl1 Arl1 subfamily. 98.3 1.4E-06 3.1E-11 78.7 5.9 100 264-368 1-113 (158)
148 PRK00007 elongation factor G; 98.2 2.6E-06 5.7E-11 95.5 8.7 120 262-384 10-157 (693)
149 smart00175 RAB Rab subfamily o 98.2 2.2E-06 4.7E-11 77.3 6.7 54 263-317 1-59 (164)
150 cd00878 Arf_Arl Arf (ADP-ribos 98.2 1.5E-06 3.2E-11 78.4 5.5 76 264-343 1-76 (158)
151 cd04157 Arl6 Arl6 subfamily. 98.2 1.6E-06 3.4E-11 78.2 5.7 76 264-343 1-78 (162)
152 KOG1547 Septin CDC10 and relat 98.2 1.9E-06 4.1E-11 82.1 6.2 80 239-320 25-117 (336)
153 cd04119 RJL RJL (RabJ-Like) su 98.2 2.5E-06 5.3E-11 77.1 6.8 56 263-318 1-60 (168)
154 TIGR02528 EutP ethanolamine ut 98.2 5.8E-06 1.3E-10 73.2 9.0 53 134-191 51-103 (142)
155 cd04170 EF-G_bact Elongation f 98.2 2.6E-06 5.7E-11 84.5 7.3 117 264-383 1-145 (268)
156 cd01867 Rab8_Rab10_Rab13_like 98.2 2.9E-06 6.3E-11 77.5 6.9 57 262-318 3-63 (167)
157 cd04139 RalA_RalB RalA/RalB su 98.2 3.9E-06 8.5E-11 75.6 7.7 102 263-369 1-119 (164)
158 cd04142 RRP22 RRP22 subfamily. 98.2 3.1E-06 6.7E-11 80.2 7.1 56 263-319 1-61 (198)
159 cd01850 CDC_Septin CDC/Septin. 98.2 2.6E-06 5.6E-11 85.0 6.8 59 262-320 4-76 (276)
160 cd01898 Obg Obg subfamily. Th 98.2 5.7E-06 1.2E-10 75.2 8.3 93 135-252 68-168 (170)
161 cd01864 Rab19 Rab19 subfamily. 98.2 3.7E-06 8.1E-11 76.4 7.0 56 262-317 3-62 (165)
162 cd04149 Arf6 Arf6 subfamily. 98.2 3.1E-06 6.8E-11 77.8 6.4 78 261-343 8-86 (168)
163 cd01895 EngA2 EngA2 subfamily. 98.2 1.8E-05 3.9E-10 71.5 11.3 94 138-252 77-172 (174)
164 cd04124 RabL2 RabL2 subfamily. 98.2 7.6E-06 1.6E-10 74.4 8.8 79 263-344 1-83 (161)
165 TIGR00487 IF-2 translation ini 98.2 6.8E-06 1.5E-10 90.1 9.4 104 261-368 86-200 (587)
166 cd04113 Rab4 Rab4 subfamily. 98.2 4.2E-06 9.1E-11 75.6 6.6 56 263-318 1-60 (161)
167 PLN03127 Elongation factor Tu; 98.1 6.7E-06 1.5E-10 87.5 9.0 107 260-369 59-191 (447)
168 cd00879 Sar1 Sar1 subfamily. 98.1 3.6E-06 7.9E-11 78.4 6.2 56 261-318 18-74 (190)
169 cd04169 RF3 RF3 subfamily. Pe 98.1 9.6E-06 2.1E-10 80.6 9.5 118 263-383 3-152 (267)
170 cd04118 Rab24 Rab24 subfamily. 98.1 4.3E-06 9.3E-11 78.2 6.6 56 263-318 1-61 (193)
171 cd01865 Rab3 Rab3 subfamily. 98.1 5.2E-06 1.1E-10 75.6 7.0 56 263-318 2-61 (165)
172 cd04138 H_N_K_Ras_like H-Ras/N 98.1 5.2E-06 1.1E-10 74.5 6.7 54 263-318 2-60 (162)
173 cd04160 Arfrp1 Arfrp1 subfamil 98.1 2.6E-06 5.5E-11 77.4 4.7 76 264-342 1-82 (167)
174 PRK12735 elongation factor Tu; 98.1 3.7E-06 7.9E-11 88.3 6.5 107 260-369 10-142 (396)
175 cd01862 Rab7 Rab7 subfamily. 98.1 5.5E-06 1.2E-10 75.4 6.9 56 263-318 1-60 (172)
176 PRK05306 infB translation init 98.1 8.4E-06 1.8E-10 91.7 9.6 113 260-376 288-411 (787)
177 cd01882 BMS1 Bms1. Bms1 is an 98.1 1.1E-05 2.3E-10 78.2 8.7 104 259-370 36-148 (225)
178 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.1 7.2E-06 1.6E-10 74.5 7.1 55 263-318 3-62 (166)
179 cd04171 SelB SelB subfamily. 98.1 2.4E-05 5.3E-10 70.3 10.5 93 134-252 63-163 (164)
180 KOG1249 Predicted GTPases [Gen 98.1 8.2E-06 1.8E-10 85.8 8.2 158 131-302 96-264 (572)
181 smart00173 RAS Ras subfamily o 98.1 5.4E-06 1.2E-10 75.0 6.2 54 264-319 2-60 (164)
182 PRK00049 elongation factor Tu; 98.1 6.2E-06 1.3E-10 86.5 7.4 107 260-369 10-142 (396)
183 cd04137 RheB Rheb (Ras Homolog 98.1 4.3E-06 9.3E-11 77.2 5.4 54 263-318 2-60 (180)
184 cd04106 Rab23_lke Rab23-like s 98.1 6.5E-06 1.4E-10 74.2 6.1 54 263-317 1-61 (162)
185 cd00881 GTP_translation_factor 98.1 2.9E-05 6.4E-10 71.5 10.6 113 135-255 75-187 (189)
186 KOG0410 Predicted GTP binding 98.1 2.5E-06 5.4E-11 84.7 3.2 85 261-346 177-270 (410)
187 TIGR00491 aIF-2 translation in 98.1 6.1E-06 1.3E-10 90.4 6.6 103 261-368 3-134 (590)
188 cd04146 RERG_RasL11_like RERG/ 98.1 1.3E-05 2.8E-10 72.9 7.7 76 264-343 1-81 (165)
189 cd04161 Arl2l1_Arl13_like Arl2 98.0 6.5E-06 1.4E-10 75.5 5.8 75 264-343 1-76 (167)
190 cd04125 RabA_like RabA-like su 98.0 8.7E-06 1.9E-10 76.0 6.7 78 263-343 1-82 (188)
191 PRK15467 ethanolamine utilizat 98.0 2.9E-05 6.4E-10 70.8 10.0 93 133-255 52-147 (158)
192 cd01893 Miro1 Miro1 subfamily. 98.0 5.5E-06 1.2E-10 75.6 5.2 55 263-319 1-59 (166)
193 TIGR02528 EutP ethanolamine ut 98.0 4.5E-06 9.7E-11 73.9 4.4 45 264-318 2-46 (142)
194 cd00157 Rho Rho (Ras homology) 98.0 9.9E-06 2.1E-10 73.6 6.7 57 263-320 1-61 (171)
195 cd04159 Arl10_like Arl10-like 98.0 8.2E-06 1.8E-10 72.5 5.9 53 265-318 2-55 (159)
196 cd04165 GTPBP1_like GTPBP1-lik 98.0 3.2E-05 6.9E-10 74.9 10.4 118 133-252 95-220 (224)
197 PTZ00133 ADP-ribosylation fact 98.0 1.2E-05 2.5E-10 75.1 7.2 78 261-343 16-94 (182)
198 cd04110 Rab35 Rab35 subfamily. 98.0 1.1E-05 2.3E-10 76.3 6.9 79 262-343 6-88 (199)
199 cd04116 Rab9 Rab9 subfamily. 98.0 1.2E-05 2.5E-10 73.5 6.9 57 262-318 5-65 (170)
200 TIGR01393 lepA GTP-binding pro 98.0 5.4E-06 1.2E-10 91.2 5.4 78 263-343 4-103 (595)
201 cd04140 ARHI_like ARHI subfami 98.0 1.1E-05 2.3E-10 73.5 6.6 55 263-319 2-61 (165)
202 cd04177 RSR1 RSR1 subgroup. R 98.0 9.3E-06 2E-10 74.2 6.2 55 263-319 2-61 (168)
203 cd04136 Rap_like Rap-like subf 98.0 1.1E-05 2.3E-10 72.8 6.4 55 263-319 2-61 (163)
204 COG0486 ThdF Predicted GTPase 98.0 2E-05 4.3E-10 82.2 9.0 100 126-255 277-376 (454)
205 cd04122 Rab14 Rab14 subfamily. 98.0 1.3E-05 2.9E-10 72.9 7.0 56 263-318 3-62 (166)
206 cd04123 Rab21 Rab21 subfamily. 98.0 1E-05 2.2E-10 72.6 5.9 55 263-318 1-60 (162)
207 cd00876 Ras Ras family. The R 98.0 6.5E-06 1.4E-10 73.7 4.6 74 264-342 1-79 (160)
208 TIGR02729 Obg_CgtA Obg family 98.0 2.2E-05 4.8E-10 80.3 8.9 96 135-253 225-327 (329)
209 KOG1487 GTP-binding protein DR 98.0 3E-06 6.4E-11 81.7 2.2 84 263-347 60-150 (358)
210 cd04135 Tc10 TC10 subfamily. 98.0 1.6E-05 3.5E-10 72.7 6.7 55 263-319 1-60 (174)
211 cd04144 Ras2 Ras2 subfamily. 98.0 1.1E-05 2.3E-10 75.6 5.6 53 264-318 1-58 (190)
212 cd04150 Arf1_5_like Arf1-Arf5- 97.9 1.5E-05 3.3E-10 72.4 6.0 76 263-343 1-77 (159)
213 CHL00189 infB translation init 97.9 1E-05 2.2E-10 90.4 5.5 104 261-368 243-360 (742)
214 cd01889 SelB_euk SelB subfamil 97.9 7.2E-05 1.6E-09 70.1 10.6 96 134-253 80-184 (192)
215 PF00735 Septin: Septin; Inte 97.9 1.5E-05 3.2E-10 79.7 6.3 59 262-320 4-76 (281)
216 cd04115 Rab33B_Rab33A Rab33B/R 97.9 2.2E-05 4.9E-10 71.9 7.0 57 262-318 2-62 (170)
217 PTZ00327 eukaryotic translatio 97.9 7.6E-05 1.6E-09 79.6 11.8 105 133-255 128-233 (460)
218 cd01885 EF2 EF2 (for archaea a 97.9 4.3E-05 9.3E-10 73.9 9.1 102 264-368 2-138 (222)
219 PRK04004 translation initiatio 97.9 1.9E-05 4.1E-10 86.8 7.3 102 261-367 5-135 (586)
220 PLN03110 Rab GTPase; Provision 97.9 2.1E-05 4.6E-10 75.4 6.9 80 261-343 11-94 (216)
221 cd04176 Rap2 Rap2 subgroup. T 97.9 2.2E-05 4.8E-10 71.0 6.5 54 263-318 2-60 (163)
222 cd04147 Ras_dva Ras-dva subfam 97.9 1.9E-05 4.2E-10 74.5 6.3 101 264-369 1-118 (198)
223 PRK12299 obgE GTPase CgtA; Rev 97.9 6.8E-05 1.5E-09 76.9 10.5 98 134-256 225-329 (335)
224 PRK12298 obgE GTPase CgtA; Rev 97.9 4.1E-05 8.9E-10 80.1 9.0 100 135-257 227-335 (390)
225 TIGR00503 prfC peptide chain r 97.9 4.4E-05 9.6E-10 82.8 9.6 120 261-383 10-161 (527)
226 cd04114 Rab30 Rab30 subfamily. 97.9 2.9E-05 6.3E-10 70.6 6.9 56 262-318 7-67 (169)
227 cd04101 RabL4 RabL4 (Rab-like4 97.9 2.7E-05 5.8E-10 70.4 6.6 56 263-318 1-63 (164)
228 cd00877 Ran Ran (Ras-related n 97.9 2.7E-05 5.9E-10 71.3 6.7 57 263-319 1-61 (166)
229 cd01879 FeoB Ferrous iron tran 97.9 4.8E-05 1E-09 68.0 8.1 81 144-253 73-155 (158)
230 TIGR00485 EF-Tu translation el 97.9 3.2E-05 7E-10 81.1 7.9 107 260-369 10-142 (394)
231 smart00177 ARF ARF-like small 97.9 2.9E-05 6.3E-10 71.8 6.7 78 261-343 12-90 (175)
232 cd04164 trmE TrmE (MnmE, ThdF, 97.9 6.5E-05 1.4E-09 66.8 8.8 87 135-254 70-156 (157)
233 PRK05124 cysN sulfate adenylyl 97.9 3.4E-05 7.3E-10 82.8 8.0 108 259-369 24-174 (474)
234 TIGR00475 selB selenocysteine- 97.9 2E-05 4.4E-10 86.6 6.3 104 263-369 1-117 (581)
235 cd01881 Obg_like The Obg-like 97.9 4.7E-05 1E-09 69.4 7.8 63 135-197 64-141 (176)
236 PRK12296 obgE GTPase CgtA; Rev 97.9 0.0001 2.2E-09 79.0 11.4 98 134-256 225-341 (500)
237 cd04109 Rab28 Rab28 subfamily. 97.9 3.3E-05 7.1E-10 74.0 7.1 78 263-344 1-84 (215)
238 cd04127 Rab27A Rab27a subfamil 97.9 3.2E-05 6.9E-10 71.3 6.6 26 262-287 4-29 (180)
239 smart00174 RHO Rho (Ras homolo 97.8 2.9E-05 6.2E-10 71.1 5.9 54 265-319 1-58 (174)
240 cd04132 Rho4_like Rho4-like su 97.8 3.3E-05 7.1E-10 71.8 6.3 55 263-318 1-60 (187)
241 cd04117 Rab15 Rab15 subfamily. 97.8 3.9E-05 8.4E-10 69.8 6.7 56 263-318 1-60 (161)
242 cd04148 RGK RGK subfamily. Th 97.8 3.4E-05 7.3E-10 74.4 6.5 56 263-318 1-61 (221)
243 PLN00223 ADP-ribosylation fact 97.8 3.5E-05 7.5E-10 71.9 6.4 78 261-343 16-94 (181)
244 smart00053 DYNc Dynamin, GTPas 97.8 0.00012 2.6E-09 71.5 10.3 25 262-286 26-50 (240)
245 PF08477 Miro: Miro-like prote 97.8 3.1E-05 6.8E-10 66.3 5.3 76 264-342 1-82 (119)
246 PRK00741 prfC peptide chain re 97.8 7.7E-05 1.7E-09 80.9 9.5 120 261-383 9-160 (526)
247 PTZ00369 Ras-like protein; Pro 97.8 4.3E-05 9.3E-10 71.5 6.6 57 262-319 5-65 (189)
248 COG2262 HflX GTPases [General 97.8 5.6E-05 1.2E-09 77.7 7.8 111 132-274 259-372 (411)
249 cd00880 Era_like Era (E. coli 97.8 0.00016 3.4E-09 63.6 9.9 62 136-199 66-127 (163)
250 cd01890 LepA LepA subfamily. 97.8 0.00016 3.5E-09 66.4 10.3 94 135-254 80-176 (179)
251 cd04111 Rab39 Rab39 subfamily. 97.8 4.8E-05 1E-09 72.8 6.7 77 263-343 3-85 (211)
252 TIGR03156 GTP_HflX GTP-binding 97.8 0.00012 2.7E-09 75.5 10.1 86 138-252 261-349 (351)
253 cd01892 Miro2 Miro2 subfamily. 97.8 9.3E-05 2E-09 68.0 8.2 79 261-343 3-87 (169)
254 PLN03108 Rab family protein; P 97.8 5.8E-05 1.2E-09 72.1 6.9 79 262-343 6-88 (210)
255 cd04108 Rab36_Rab34 Rab34/Rab3 97.8 6E-05 1.3E-09 69.4 6.7 74 264-340 2-79 (170)
256 TIGR03680 eif2g_arch translati 97.7 0.00024 5.3E-09 74.8 12.1 105 133-255 91-196 (406)
257 cd01888 eIF2_gamma eIF2-gamma 97.7 3.4E-05 7.3E-10 73.3 5.1 23 263-285 1-23 (203)
258 cd00882 Ras_like_GTPase Ras-li 97.7 2.6E-05 5.7E-10 67.6 4.0 71 267-342 1-77 (157)
259 PLN03126 Elongation factor Tu; 97.7 6.5E-05 1.4E-09 80.5 7.7 107 260-369 79-211 (478)
260 cd04126 Rab20 Rab20 subfamily. 97.7 4.8E-05 1E-09 73.4 6.0 75 263-342 1-76 (220)
261 PRK10512 selenocysteinyl-tRNA- 97.7 4.8E-05 1E-09 84.0 6.7 104 263-369 1-118 (614)
262 cd01884 EF_Tu EF-Tu subfamily. 97.7 0.00029 6.4E-09 66.7 11.2 59 133-193 76-135 (195)
263 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 7.1E-05 1.5E-09 69.0 6.8 56 262-319 2-62 (172)
264 cd01893 Miro1 Miro1 subfamily. 97.7 0.00011 2.3E-09 67.1 7.9 96 137-254 62-163 (166)
265 cd04167 Snu114p Snu114p subfam 97.7 8.1E-05 1.8E-09 71.2 7.3 102 264-368 2-136 (213)
266 PLN03071 GTP-binding nuclear p 97.7 7.7E-05 1.7E-09 71.8 7.2 59 261-319 12-74 (219)
267 cd01870 RhoA_like RhoA-like su 97.7 7E-05 1.5E-09 68.5 6.5 55 263-318 2-60 (175)
268 COG4917 EutP Ethanolamine util 97.7 0.00018 3.9E-09 62.3 8.3 95 130-252 49-143 (148)
269 cd01878 HflX HflX subfamily. 97.7 0.00026 5.7E-09 66.8 10.4 87 138-252 113-202 (204)
270 PRK04000 translation initiatio 97.7 0.00025 5.5E-09 74.8 11.2 100 133-255 96-201 (411)
271 PRK05433 GTP-binding protein L 97.7 3.1E-05 6.7E-10 85.3 4.2 79 262-343 7-107 (600)
272 PRK10512 selenocysteinyl-tRNA- 97.7 0.00044 9.6E-09 76.5 13.1 97 133-255 62-166 (614)
273 cd01883 EF1_alpha Eukaryotic e 97.7 5.4E-05 1.2E-09 72.8 5.2 102 264-368 1-150 (219)
274 PRK10218 GTP-binding protein; 97.7 0.0002 4.3E-09 78.9 10.1 103 263-368 6-133 (607)
275 PTZ00416 elongation factor 2; 97.7 0.00011 2.3E-09 84.2 8.3 104 262-368 19-157 (836)
276 cd01861 Rab6 Rab6 subfamily. 97.6 0.00016 3.4E-09 65.0 7.7 96 134-252 61-159 (161)
277 PRK12736 elongation factor Tu; 97.6 7E-05 1.5E-09 78.6 6.0 106 260-368 10-141 (394)
278 cd01891 TypA_BipA TypA (tyrosi 97.6 0.00063 1.4E-08 63.8 11.5 67 134-202 77-146 (194)
279 PRK00454 engB GTP-binding prot 97.6 0.00037 8E-09 65.0 9.9 88 141-255 102-194 (196)
280 cd04162 Arl9_Arfrp2_like Arl9/ 97.6 0.00015 3.3E-09 66.2 7.0 74 265-343 2-77 (164)
281 cd04157 Arl6 Arl6 subfamily. 97.6 0.00019 4.2E-09 64.4 7.6 90 139-251 62-160 (162)
282 cd04134 Rho3 Rho3 subfamily. 97.6 0.00014 2.9E-09 68.2 6.7 54 264-318 2-59 (189)
283 cd04156 ARLTS1 ARLTS1 subfamil 97.6 0.00019 4.2E-09 64.5 7.5 96 135-252 57-159 (160)
284 PRK13768 GTPase; Provisional 97.6 0.00024 5.2E-09 70.0 8.6 120 136-258 117-250 (253)
285 COG1100 GTPase SAR1 and relate 97.6 0.00012 2.5E-09 69.8 6.3 58 263-320 6-67 (219)
286 cd04105 SR_beta Signal recogni 97.6 0.00012 2.5E-09 69.8 6.2 75 264-343 2-82 (203)
287 PLN03127 Elongation factor Tu; 97.6 0.00081 1.7E-08 71.7 12.6 58 134-193 136-194 (447)
288 cd04124 RabL2 RabL2 subfamily. 97.5 0.00048 1E-08 62.4 9.3 94 135-254 62-157 (161)
289 smart00176 RAN Ran (Ras-relate 97.5 9.5E-05 2.1E-09 70.3 4.6 70 268-340 1-74 (200)
290 CHL00071 tufA elongation facto 97.5 0.0007 1.5E-08 71.4 11.5 59 133-193 86-145 (409)
291 PRK13351 elongation factor G; 97.5 0.00024 5.2E-09 79.9 8.4 119 262-383 8-154 (687)
292 COG5019 CDC3 Septin family pro 97.5 0.00017 3.7E-09 73.2 6.3 59 262-320 23-95 (373)
293 cd04130 Wrch_1 Wrch-1 subfamil 97.5 0.00022 4.8E-09 65.4 6.6 55 263-319 1-60 (173)
294 PF10662 PduV-EutP: Ethanolami 97.5 0.00016 3.4E-09 64.8 5.3 95 264-368 3-102 (143)
295 cd01897 NOG NOG1 is a nucleola 97.5 0.00056 1.2E-08 62.0 9.1 83 145-252 79-165 (168)
296 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00034 7.5E-09 65.2 7.9 93 139-255 66-166 (182)
297 TIGR00490 aEF-2 translation el 97.5 0.00013 2.9E-09 82.2 6.0 104 262-368 19-151 (720)
298 TIGR00475 selB selenocysteine- 97.5 0.0011 2.4E-08 73.0 12.8 60 133-194 61-121 (581)
299 cd04149 Arf6 Arf6 subfamily. 97.5 0.00028 6E-09 64.8 6.8 90 140-252 71-167 (168)
300 cd01874 Cdc42 Cdc42 subfamily. 97.5 0.00029 6.2E-09 65.2 6.9 55 263-319 2-61 (175)
301 cd04154 Arl2 Arl2 subfamily. 97.5 0.00036 7.8E-09 64.0 7.6 92 138-251 74-171 (173)
302 cd04160 Arfrp1 Arfrp1 subfamil 97.5 0.0003 6.6E-09 63.7 7.0 95 135-251 63-165 (167)
303 PRK12297 obgE GTPase CgtA; Rev 97.5 0.00052 1.1E-08 72.5 9.6 95 135-256 226-328 (424)
304 PLN00116 translation elongatio 97.5 0.00031 6.7E-09 80.6 8.4 117 243-368 6-163 (843)
305 TIGR01394 TypA_BipA GTP-bindin 97.4 0.00036 7.9E-09 76.8 8.5 102 264-368 3-129 (594)
306 cd00154 Rab Rab family. Rab G 97.4 0.00058 1.3E-08 60.4 8.3 57 133-189 60-118 (159)
307 PF02421 FeoB_N: Ferrous iron 97.4 6.6E-05 1.4E-09 68.4 2.1 79 143-250 76-156 (156)
308 cd00878 Arf_Arl Arf (ADP-ribos 97.4 0.00041 8.9E-09 62.3 7.4 93 138-252 59-157 (158)
309 cd01862 Rab7 Rab7 subfamily. 97.4 0.00058 1.3E-08 62.0 8.3 56 134-189 61-122 (172)
310 cd01871 Rac1_like Rac1-like su 97.4 0.00038 8.1E-09 64.3 6.9 54 263-318 2-60 (174)
311 cd04112 Rab26 Rab26 subfamily. 97.4 0.00055 1.2E-08 64.1 8.1 101 134-257 62-165 (191)
312 cd04114 Rab30 Rab30 subfamily. 97.4 0.00064 1.4E-08 61.7 8.3 96 134-252 68-166 (169)
313 smart00178 SAR Sar1p-like memb 97.4 0.00037 8.1E-09 64.9 6.9 99 139-252 78-182 (184)
314 TIGR03598 GTPase_YsxC ribosome 97.4 0.00062 1.3E-08 63.0 8.3 57 145-203 100-160 (179)
315 cd04166 CysN_ATPS CysN_ATPS su 97.4 0.001 2.2E-08 63.5 9.9 56 134-190 89-144 (208)
316 cd04151 Arl1 Arl1 subfamily. 97.4 0.0005 1.1E-08 61.9 7.5 91 139-251 60-156 (158)
317 PTZ00132 GTP-binding nuclear p 97.4 0.0004 8.7E-09 66.3 7.1 58 261-318 8-69 (215)
318 cd04101 RabL4 RabL4 (Rab-like4 97.4 0.00064 1.4E-08 61.3 7.9 93 135-252 65-161 (164)
319 KOG1423 Ras-like GTPase ERA [C 97.4 0.00062 1.3E-08 67.6 8.1 127 130-260 140-276 (379)
320 PF00071 Ras: Ras family; Int 97.4 0.00044 9.6E-09 62.3 6.8 55 264-318 1-59 (162)
321 TIGR02034 CysN sulfate adenyly 97.4 0.00026 5.7E-09 74.6 6.0 104 263-369 1-147 (406)
322 PRK04213 GTP-binding protein; 97.4 0.0014 3.1E-08 61.6 10.4 93 142-255 87-192 (201)
323 KOG2655 Septin family protein 97.4 0.00015 3.3E-09 74.0 4.0 59 262-320 21-92 (366)
324 cd04143 Rhes_like Rhes_like su 97.4 0.00031 6.8E-09 69.0 6.1 54 263-318 1-59 (247)
325 cd01887 IF2_eIF5B IF2/eIF5B (i 97.4 0.0022 4.8E-08 57.8 11.3 98 140-254 68-165 (168)
326 cd01864 Rab19 Rab19 subfamily. 97.4 0.00083 1.8E-08 60.9 8.5 97 134-252 64-163 (165)
327 PRK12736 elongation factor Tu; 97.3 0.0027 5.8E-08 66.7 13.3 58 133-192 86-144 (394)
328 PRK05291 trmE tRNA modificatio 97.3 0.00063 1.4E-08 72.6 8.7 84 137-254 286-369 (449)
329 cd04152 Arl4_Arl7 Arl4/Arl7 su 97.3 0.00082 1.8E-08 62.5 8.3 93 140-254 70-169 (183)
330 cd04128 Spg1 Spg1p. Spg1p (se 97.3 0.00051 1.1E-08 64.0 6.9 56 263-318 1-60 (182)
331 PRK00049 elongation factor Tu; 97.3 0.0013 2.9E-08 69.0 10.8 59 133-193 86-145 (396)
332 PRK11058 GTPase HflX; Provisio 97.3 0.0012 2.6E-08 70.0 10.3 91 139-255 270-362 (426)
333 PTZ00099 rab6; Provisional 97.3 0.0007 1.5E-08 62.9 7.6 91 139-256 46-143 (176)
334 smart00175 RAB Rab subfamily o 97.3 0.00095 2.1E-08 60.0 8.0 93 133-254 60-161 (164)
335 cd04131 Rnd Rnd subfamily. Th 97.3 0.00067 1.5E-08 63.0 7.0 55 263-318 2-60 (178)
336 cd04158 ARD1 ARD1 subfamily. 97.3 0.00067 1.5E-08 62.1 6.8 95 139-255 60-161 (169)
337 cd04109 Rab28 Rab28 subfamily. 97.3 0.00074 1.6E-08 64.6 7.4 95 138-255 66-166 (215)
338 cd01876 YihA_EngB The YihA (En 97.3 0.0027 5.9E-08 56.6 10.6 90 140-253 76-169 (170)
339 TIGR00483 EF-1_alpha translati 97.3 0.00036 7.7E-09 74.0 5.5 58 260-317 5-95 (426)
340 cd04129 Rho2 Rho2 subfamily. 97.2 0.00066 1.4E-08 63.3 6.6 56 263-319 2-61 (187)
341 PF00025 Arf: ADP-ribosylation 97.2 0.0005 1.1E-08 63.7 5.7 79 261-344 13-92 (175)
342 cd04150 Arf1_5_like Arf1-Arf5- 97.2 0.001 2.3E-08 60.3 7.6 56 135-190 57-115 (159)
343 cd04121 Rab40 Rab40 subfamily. 97.2 0.00083 1.8E-08 63.2 7.0 59 261-319 5-67 (189)
344 cd04120 Rab12 Rab12 subfamily. 97.2 0.00075 1.6E-08 64.2 6.7 76 264-342 2-81 (202)
345 cd01883 EF1_alpha Eukaryotic e 97.2 0.0015 3.2E-08 62.8 8.9 57 133-190 88-151 (219)
346 cd04153 Arl5_Arl8 Arl5/Arl8 su 97.2 0.0012 2.6E-08 60.8 7.8 56 135-190 72-130 (174)
347 PRK12735 elongation factor Tu; 97.2 0.0028 6.2E-08 66.6 11.5 58 133-192 86-144 (396)
348 smart00177 ARF ARF-like small 97.2 0.00096 2.1E-08 61.6 7.1 52 139-190 74-128 (175)
349 cd01866 Rab2 Rab2 subfamily. 97.2 0.0016 3.4E-08 59.4 8.4 55 134-190 65-123 (168)
350 PRK07560 elongation factor EF- 97.2 0.00068 1.5E-08 76.7 7.1 105 261-368 19-152 (731)
351 cd04119 RJL RJL (RabJ-Like) su 97.2 0.0016 3.5E-08 58.5 8.2 56 135-190 62-124 (168)
352 PRK05506 bifunctional sulfate 97.2 0.0038 8.1E-08 69.6 12.7 57 133-190 115-171 (632)
353 PTZ00141 elongation factor 1- 97.2 0.00074 1.6E-08 72.0 6.8 104 260-366 5-156 (446)
354 cd04159 Arl10_like Arl10-like 97.1 0.0014 3E-08 58.0 7.4 96 135-252 57-158 (159)
355 cd04142 RRP22 RRP22 subfamily. 97.1 0.0014 3E-08 62.1 7.6 58 134-191 69-131 (198)
356 COG0218 Predicted GTPase [Gene 97.1 0.0043 9.3E-08 58.4 10.3 101 132-255 90-197 (200)
357 cd00879 Sar1 Sar1 subfamily. 97.1 0.0017 3.7E-08 60.3 7.5 105 137-253 78-189 (190)
358 PRK12740 elongation factor G; 97.1 0.0013 2.7E-08 73.9 7.6 113 268-383 1-141 (668)
359 cd04102 RabL3 RabL3 (Rab-like3 97.0 0.0013 2.8E-08 62.6 6.6 56 263-318 1-65 (202)
360 TIGR00485 EF-Tu translation el 97.0 0.0048 1E-07 64.8 11.4 58 133-192 86-144 (394)
361 cd04133 Rop_like Rop subfamily 97.0 0.0015 3.3E-08 60.6 6.9 57 263-320 2-62 (176)
362 cd04145 M_R_Ras_like M-Ras/R-R 97.0 0.002 4.3E-08 58.0 7.4 95 135-252 63-161 (164)
363 cd04118 Rab24 Rab24 subfamily. 97.0 0.0018 4E-08 60.3 7.4 91 141-254 69-165 (193)
364 TIGR00483 EF-1_alpha translati 97.0 0.0042 9.1E-08 65.9 10.9 58 133-190 96-155 (426)
365 PLN03126 Elongation factor Tu; 97.0 0.0058 1.3E-07 65.7 11.8 59 133-193 155-214 (478)
366 PRK12317 elongation factor 1-a 97.0 0.0023 5E-08 67.9 8.7 57 133-190 95-153 (425)
367 TIGR01393 lepA GTP-binding pro 97.0 0.0046 9.9E-08 68.3 11.3 97 134-256 82-181 (595)
368 cd01875 RhoG RhoG subfamily. 97.0 0.0018 3.9E-08 60.7 7.0 57 262-319 3-63 (191)
369 smart00174 RHO Rho (Ras homolo 97.0 0.0013 2.8E-08 60.0 5.9 50 142-191 66-117 (174)
370 cd01892 Miro2 Miro2 subfamily. 97.0 0.0013 2.8E-08 60.3 5.9 48 142-191 74-123 (169)
371 PRK05433 GTP-binding protein L 97.0 0.0035 7.7E-08 69.3 10.3 100 134-256 86-185 (600)
372 TIGR02034 CysN sulfate adenyly 97.0 0.0045 9.8E-08 65.3 10.7 57 133-190 91-147 (406)
373 cd04110 Rab35 Rab35 subfamily. 97.0 0.0024 5.2E-08 60.2 7.7 94 135-254 68-166 (199)
374 cd00882 Ras_like_GTPase Ras-li 97.0 0.002 4.3E-08 55.6 6.6 58 140-197 63-123 (157)
375 cd01874 Cdc42 Cdc42 subfamily. 97.0 0.0015 3.2E-08 60.4 6.0 50 142-191 69-120 (175)
376 cd04165 GTPBP1_like GTPBP1-lik 97.0 0.0013 2.9E-08 63.6 5.8 21 264-284 1-21 (224)
377 cd01868 Rab11_like Rab11-like. 97.0 0.0032 7E-08 56.8 8.1 52 138-191 68-123 (165)
378 cd00157 Rho Rho (Ras homology) 97.0 0.0016 3.5E-08 59.0 6.1 56 142-197 68-125 (171)
379 cd01882 BMS1 Bms1. Bms1 is an 97.0 0.0024 5.2E-08 61.8 7.6 65 137-203 95-161 (225)
380 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.9 0.0021 4.5E-08 60.0 6.9 56 261-317 4-63 (182)
381 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 96.9 0.0018 3.8E-08 62.7 6.5 76 263-342 2-81 (222)
382 TIGR03680 eif2g_arch translati 96.9 0.00085 1.8E-08 70.7 4.6 25 261-285 3-27 (406)
383 cd04106 Rab23_lke Rab23-like s 96.9 0.0029 6.4E-08 56.8 7.5 55 135-191 64-121 (162)
384 cd04123 Rab21 Rab21 subfamily. 96.9 0.0037 8.1E-08 55.7 8.1 90 139-252 66-159 (162)
385 cd04107 Rab32_Rab38 Rab38/Rab3 96.9 0.0023 5E-08 60.4 7.0 51 139-189 67-123 (201)
386 cd01867 Rab8_Rab10_Rab13_like 96.9 0.0039 8.4E-08 56.7 8.3 54 135-190 65-122 (167)
387 cd04122 Rab14 Rab14 subfamily. 96.9 0.0027 5.9E-08 57.6 7.2 55 134-190 63-121 (166)
388 cd01871 Rac1_like Rac1-like su 96.9 0.0027 5.9E-08 58.6 7.3 50 141-190 68-119 (174)
389 cd04138 H_N_K_Ras_like H-Ras/N 96.9 0.0034 7.4E-08 56.0 7.7 53 139-191 66-121 (162)
390 PRK05124 cysN sulfate adenylyl 96.9 0.006 1.3E-07 65.6 10.7 57 133-190 118-174 (474)
391 cd01860 Rab5_related Rab5-rela 96.9 0.006 1.3E-07 54.8 9.2 95 135-253 63-161 (163)
392 cd04132 Rho4_like Rho4-like su 96.9 0.0036 7.8E-08 58.0 7.8 50 141-190 68-119 (187)
393 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.9 0.0036 7.8E-08 56.6 7.6 56 134-191 63-122 (166)
394 cd04127 Rab27A Rab27a subfamil 96.9 0.0039 8.5E-08 57.2 7.9 90 134-252 75-174 (180)
395 cd01886 EF-G Elongation factor 96.8 0.0031 6.7E-08 62.8 7.5 68 134-204 76-143 (270)
396 cd04108 Rab36_Rab34 Rab34/Rab3 96.8 0.0046 1E-07 56.7 8.2 97 135-254 62-164 (170)
397 TIGR01394 TypA_BipA GTP-bindin 96.8 0.011 2.4E-07 65.2 12.5 68 133-202 75-145 (594)
398 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.8 0.0028 6E-08 61.7 6.9 77 262-342 13-93 (232)
399 PLN00223 ADP-ribosylation fact 96.8 0.004 8.6E-08 58.0 7.6 93 139-253 78-176 (181)
400 cd01865 Rab3 Rab3 subfamily. 96.8 0.0042 9E-08 56.4 7.6 55 135-191 63-121 (165)
401 cd01885 EF2 EF2 (for archaea a 96.8 0.0046 9.9E-08 59.8 8.2 54 134-189 85-138 (222)
402 cd04176 Rap2 Rap2 subgroup. T 96.8 0.0027 6E-08 57.2 6.2 89 141-252 68-160 (163)
403 cd04162 Arl9_Arfrp2_like Arl9/ 96.8 0.0026 5.7E-08 58.0 6.1 52 140-192 62-115 (164)
404 cd04103 Centaurin_gamma Centau 96.8 0.003 6.5E-08 57.4 6.4 54 263-318 1-58 (158)
405 cd04139 RalA_RalB RalA/RalB su 96.8 0.0058 1.3E-07 54.7 8.1 95 135-254 61-161 (164)
406 KOG1954 Endocytosis/signaling 96.7 0.01 2.2E-07 60.5 10.2 25 262-286 58-82 (532)
407 cd01896 DRG The developmentall 96.7 0.0086 1.9E-07 58.2 9.7 26 134-159 66-91 (233)
408 cd04147 Ras_dva Ras-dva subfam 96.7 0.0064 1.4E-07 57.2 8.6 51 141-191 66-119 (198)
409 PRK09435 membrane ATPase/prote 96.7 0.0011 2.4E-08 67.8 3.5 35 440-478 236-270 (332)
410 cd04140 ARHI_like ARHI subfami 96.7 0.0047 1E-07 56.0 7.4 89 141-253 68-163 (165)
411 cd00876 Ras Ras family. The R 96.7 0.0068 1.5E-07 53.9 8.3 93 135-252 60-158 (160)
412 CHL00189 infB translation init 96.7 0.011 2.3E-07 66.7 11.4 98 133-254 306-409 (742)
413 PLN00023 GTP-binding protein; 96.7 0.0038 8.2E-08 63.5 7.1 79 261-342 20-115 (334)
414 COG0536 Obg Predicted GTPase [ 96.7 0.011 2.4E-07 59.8 10.1 96 138-256 230-334 (369)
415 PTZ00133 ADP-ribosylation fact 96.7 0.0054 1.2E-07 57.0 7.6 94 139-254 78-177 (182)
416 cd00877 Ran Ran (Ras-related n 96.7 0.0042 9.2E-08 56.7 6.8 89 142-254 69-158 (166)
417 PLN03110 Rab GTPase; Provision 96.7 0.0066 1.4E-07 58.2 8.3 55 134-190 73-131 (216)
418 cd04126 Rab20 Rab20 subfamily. 96.7 0.0065 1.4E-07 58.6 8.2 50 141-190 63-114 (220)
419 smart00173 RAS Ras subfamily o 96.7 0.0058 1.3E-07 55.0 7.4 88 140-254 66-161 (164)
420 cd04125 RabA_like RabA-like su 96.7 0.0068 1.5E-07 56.3 8.1 54 135-190 62-119 (188)
421 cd04144 Ras2 Ras2 subfamily. 96.7 0.0075 1.6E-07 56.3 8.3 91 138-255 63-163 (190)
422 cd04116 Rab9 Rab9 subfamily. 96.7 0.0085 1.8E-07 54.4 8.4 57 135-191 67-129 (170)
423 cd04130 Wrch_1 Wrch-1 subfamil 96.6 0.0046 9.9E-08 56.6 6.6 50 142-191 68-119 (173)
424 cd04113 Rab4 Rab4 subfamily. 96.6 0.0083 1.8E-07 53.9 8.2 57 135-191 62-120 (161)
425 cd04148 RGK RGK subfamily. Th 96.6 0.004 8.7E-08 60.0 6.4 88 145-255 72-163 (221)
426 PRK10218 GTP-binding protein; 96.6 0.021 4.6E-07 63.1 12.7 67 134-202 80-149 (607)
427 TIGR00231 small_GTP small GTP- 96.6 0.0019 4.1E-08 56.6 3.4 85 141-251 76-160 (161)
428 KOG1489 Predicted GTP-binding 96.6 0.015 3.3E-07 58.2 9.9 95 133-252 262-364 (366)
429 TIGR00491 aIF-2 translation in 96.6 0.0096 2.1E-07 65.6 9.5 54 135-190 82-135 (590)
430 cd04167 Snu114p Snu114p subfam 96.5 0.0081 1.8E-07 57.3 7.8 53 135-189 84-136 (213)
431 cd04136 Rap_like Rap-like subf 96.5 0.0084 1.8E-07 53.7 7.5 89 141-252 68-160 (163)
432 cd04120 Rab12 Rab12 subfamily. 96.5 0.0088 1.9E-07 56.9 8.0 52 139-190 66-119 (202)
433 TIGR00750 lao LAO/AO transport 96.5 0.011 2.4E-07 59.8 9.0 24 261-284 33-56 (300)
434 cd01863 Rab18 Rab18 subfamily. 96.5 0.0097 2.1E-07 53.4 7.8 54 135-190 62-120 (161)
435 PRK09554 feoB ferrous iron tra 96.5 0.0055 1.2E-07 69.5 7.4 66 143-212 83-150 (772)
436 PRK12739 elongation factor G; 96.5 0.0066 1.4E-07 68.4 7.8 68 135-205 86-153 (691)
437 PLN03118 Rab family protein; P 96.5 0.012 2.6E-07 55.9 8.5 98 135-255 75-177 (211)
438 cd04121 Rab40 Rab40 subfamily. 96.5 0.012 2.7E-07 55.2 8.3 91 135-253 68-165 (189)
439 KOG1249 Predicted GTPases [Gen 96.4 0.0017 3.7E-08 68.7 2.5 81 236-321 288-375 (572)
440 cd04161 Arl2l1_Arl13_like Arl2 96.4 0.0039 8.5E-08 57.0 4.7 64 138-201 59-125 (167)
441 cd04175 Rap1 Rap1 subgroup. T 96.4 0.0085 1.8E-07 54.1 6.8 52 140-191 67-121 (164)
442 PF09439 SRPRB: Signal recogni 96.4 0.0025 5.5E-08 59.5 3.3 76 263-344 4-86 (181)
443 cd04135 Tc10 TC10 subfamily. 96.4 0.0057 1.2E-07 55.7 5.6 50 142-191 68-119 (174)
444 TIGR00450 mnmE_trmE_thdF tRNA 96.4 0.015 3.2E-07 62.0 9.5 51 138-191 275-325 (442)
445 cd01870 RhoA_like RhoA-like su 96.4 0.012 2.5E-07 53.7 7.5 51 142-192 69-121 (175)
446 TIGR00437 feoB ferrous iron tr 96.3 0.0061 1.3E-07 67.3 6.4 81 144-253 71-153 (591)
447 PLN03108 Rab family protein; P 96.3 0.011 2.5E-07 56.2 7.6 57 135-191 68-126 (210)
448 PF04670 Gtr1_RagA: Gtr1/RagA 96.3 0.005 1.1E-07 59.9 5.0 81 264-344 1-87 (232)
449 KOG1191 Mitochondrial GTPase [ 96.3 0.0068 1.5E-07 63.8 6.3 61 131-191 334-404 (531)
450 PRK00007 elongation factor G; 96.3 0.011 2.4E-07 66.6 8.5 69 135-206 88-156 (693)
451 KOG3859 Septins (P-loop GTPase 96.3 0.0048 1E-07 60.5 4.7 82 237-320 19-108 (406)
452 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 96.3 0.015 3.2E-07 56.7 8.2 50 140-189 79-130 (232)
453 cd04168 TetM_like Tet(M)-like 96.3 0.011 2.4E-07 57.6 7.5 68 135-205 77-144 (237)
454 smart00053 DYNc Dynamin, GTPas 96.3 0.015 3.3E-07 56.8 8.3 69 132-204 148-218 (240)
455 cd04146 RERG_RasL11_like RERG/ 96.3 0.0097 2.1E-07 53.8 6.6 53 138-190 64-120 (165)
456 PRK05306 infB translation init 96.3 0.015 3.3E-07 65.9 9.4 54 135-190 350-403 (787)
457 cd01875 RhoG RhoG subfamily. 96.3 0.012 2.7E-07 55.0 7.4 50 141-190 70-121 (191)
458 cd04141 Rit_Rin_Ric Rit/Rin/Ri 96.3 0.014 2.9E-07 53.7 7.4 51 140-190 68-121 (172)
459 TIGR00487 IF-2 translation ini 96.3 0.02 4.3E-07 63.1 9.8 94 135-252 148-247 (587)
460 cd04134 Rho3 Rho3 subfamily. 96.3 0.012 2.5E-07 55.0 7.0 50 142-191 68-119 (189)
461 cd04111 Rab39 Rab39 subfamily. 96.3 0.014 3E-07 55.8 7.5 98 135-255 65-166 (211)
462 cd04155 Arl3 Arl3 subfamily. 96.2 0.013 2.8E-07 53.3 7.1 97 135-251 71-171 (173)
463 cd01873 RhoBTB RhoBTB subfamil 96.2 0.012 2.6E-07 55.6 6.8 49 142-190 84-134 (195)
464 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 96.2 0.014 3.1E-07 54.4 7.2 50 141-190 72-123 (182)
465 KOG0395 Ras-related GTPase [Ge 96.2 0.01 2.2E-07 56.3 6.2 53 262-316 3-60 (196)
466 PRK09435 membrane ATPase/prote 96.2 0.013 2.7E-07 60.1 7.3 95 142-255 166-260 (332)
467 PRK14845 translation initiatio 96.2 0.023 4.9E-07 66.2 10.0 55 135-191 539-593 (1049)
468 PRK04000 translation initiatio 96.2 0.0054 1.2E-07 64.8 4.6 25 261-285 8-32 (411)
469 cd04143 Rhes_like Rhes_like su 96.2 0.021 4.5E-07 56.1 8.4 90 142-254 68-170 (247)
470 PTZ00369 Ras-like protein; Pro 96.1 0.014 3E-07 54.4 6.8 51 140-190 71-124 (189)
471 PTZ00141 elongation factor 1- 96.1 0.052 1.1E-06 58.0 11.9 56 132-188 95-157 (446)
472 cd04131 Rnd Rnd subfamily. Th 96.1 0.016 3.4E-07 53.8 6.9 50 141-190 68-119 (178)
473 cd04103 Centaurin_gamma Centau 96.1 0.015 3.2E-07 52.8 6.5 87 143-252 63-156 (158)
474 smart00176 RAN Ran (Ras-relate 96.0 0.019 4.1E-07 54.5 7.3 90 139-252 61-151 (200)
475 PLN03071 GTP-binding nuclear p 96.0 0.015 3.2E-07 56.0 6.5 86 142-252 82-169 (219)
476 cd04129 Rho2 Rho2 subfamily. 96.0 0.011 2.5E-07 54.9 5.4 49 142-190 69-119 (187)
477 cd04133 Rop_like Rop subfamily 96.0 0.02 4.3E-07 53.2 6.9 50 141-190 68-119 (176)
478 PF06858 NOG1: Nucleolar GTP-b 96.0 0.017 3.6E-07 43.4 5.0 42 146-187 14-58 (58)
479 PRK04004 translation initiatio 95.9 0.058 1.3E-06 59.6 11.5 54 135-190 84-137 (586)
480 KOG0073 GTP-binding ADP-ribosy 95.9 0.017 3.6E-07 52.6 5.8 57 261-318 15-71 (185)
481 cd04117 Rab15 Rab15 subfamily. 95.9 0.035 7.6E-07 50.2 8.2 55 135-191 62-120 (161)
482 cd04170 EF-G_bact Elongation f 95.9 0.028 6.1E-07 55.6 8.1 69 134-205 76-144 (268)
483 TIGR00484 EF-G translation elo 95.8 0.023 4.9E-07 64.1 7.8 56 135-192 88-143 (689)
484 cd01873 RhoBTB RhoBTB subfamil 95.7 0.023 4.9E-07 53.7 6.4 23 262-284 2-25 (195)
485 KOG0462 Elongation factor-type 95.7 0.032 7E-07 59.5 7.9 94 135-253 138-233 (650)
486 cd04169 RF3 RF3 subfamily. Pe 95.7 0.034 7.3E-07 55.3 7.7 57 134-192 83-139 (267)
487 PF00025 Arf: ADP-ribosylation 95.7 0.04 8.6E-07 50.9 7.6 88 142-252 78-173 (175)
488 cd01899 Ygr210 Ygr210 subfamil 95.6 0.047 1E-06 55.7 8.7 58 176-258 214-272 (318)
489 KOG0074 GTP-binding ADP-ribosy 95.6 0.033 7.2E-07 49.4 6.4 58 260-317 15-72 (185)
490 KOG1145 Mitochondrial translat 95.6 0.017 3.6E-07 61.7 5.1 57 261-318 152-212 (683)
491 cd04105 SR_beta Signal recogni 95.6 0.02 4.4E-07 54.3 5.4 70 135-205 61-138 (203)
492 COG3276 SelB Selenocysteine-sp 95.5 0.092 2E-06 54.9 10.3 101 133-254 61-161 (447)
493 KOG0080 GTPase Rab18, small G 95.5 0.034 7.4E-07 50.4 6.3 59 261-319 10-72 (209)
494 TIGR01425 SRP54_euk signal rec 95.5 0.023 5E-07 60.1 6.0 30 262-291 100-135 (429)
495 COG0480 FusA Translation elong 95.4 0.064 1.4E-06 60.1 9.3 105 261-368 9-141 (697)
496 KOG0462 Elongation factor-type 95.4 0.02 4.4E-07 61.0 5.1 158 262-469 60-239 (650)
497 KOG0394 Ras-related GTPase [Ge 95.4 0.016 3.5E-07 53.7 3.7 55 261-319 8-70 (210)
498 TIGR03263 guanyl_kin guanylate 95.4 0.01 2.3E-07 54.7 2.6 53 264-316 3-56 (180)
499 TIGR00073 hypB hydrogenase acc 95.4 0.044 9.6E-07 52.1 6.9 56 176-253 148-205 (207)
500 PF03308 ArgK: ArgK protein; 95.3 0.018 3.9E-07 56.5 4.1 24 261-284 28-51 (266)
No 1
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=7.4e-96 Score=725.65 Aligned_cols=421 Identities=53% Similarity=0.783 Sum_probs=365.6
Q ss_pred CCCCcCCCCCCCcchhhhhhhHHHHHHhhhhhHHHHhhccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 011507 1 MVKKSKKSKSKRVPLRKKYKIIKKVKEHHKKKAKEAKKLNLSGKRKVEKDPGIPNDWPFKEQELKALEARRARALKELEQ 80 (484)
Q Consensus 1 m~k~~~k~~skR~~~~~r~ki~kkv~eh~rk~~k~akk~~~~~~~k~~kd~gipn~~pfke~~l~~~~~~~~~~~e~~~~ 80 (484)
|.+..+|++|||+||++||||+|||++||||.||.|||++++ +++.+|||||||+||||++||.|+|.+|++.+|++++
T Consensus 1 ~~~~~~kk~skR~s~~~~~kiekk~~~h~~k~~k~akk~~~~-~s~~~kdp~ipns~p~k~~il~eve~~k~~~~e~re~ 79 (435)
T KOG2484|consen 1 HNMRWRKKQSKRLSTLLRSKIEKKAREHHRKVRKYAKKNGAK-KSRPRKDPGIPNSVPFKEQILPEVESKKMRIEEEREA 79 (435)
T ss_pred CchhHHHHHHhhhhhcccccccchHHHhhhHhhhHhhhCccc-ccccccCCCCCCCCCChHHHHHHhcchhhhHHHHHHH
Confidence 444557789999999999999999999999999999999965 6688999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHhcCCCCccchHHHHHHhcccccc-ccCCC------cccCCCCCCcchHHHHHHHHHHhhhcCEEEEEE
Q 011507 81 KKAARKERAQKRKLGLLEDDDVSMLADAANGKEEN-FGEGT------STASGKNRDNSDRAFYKELVKVIEVSDVILEVL 153 (484)
Q Consensus 81 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~k~~~~el~kvie~sDvIleVl 153 (484)
+++++++.+.+++..... .+.+.+..+... ++.+. ........+.+.++|+++|+++|+.|||||||+
T Consensus 80 rk~ark~e~~~~k~~~le-----~~~~~~~~~~~~~~e~e~~~~~e~~~~~~~~~~~s~kaY~ke~rkvve~sDVVleVl 154 (435)
T KOG2484|consen 80 RKAARKEEAIERKKNGLE-----ANVDDKDERIEPSPEEEEMLYAEEEYENALDNEESKKAYDKEFRKVVEASDVVLEVL 154 (435)
T ss_pred HHHHHHHHHHHhhhhhhh-----hhhhHHHHhcCCCcchHHHHHHHHHhhhhccchhhHHHHHHHHHHHHhhhheEEEee
Confidence 888887776665532111 111111111111 11111 011222345789999999999999999999999
Q ss_pred ecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCc
Q 011507 154 DARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSN 233 (484)
Q Consensus 154 DARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~ 233 (484)
|||||+||||+++|++|..+.++|++||||||+||||++++++|+.||++++|+++|+++++.+..+. .
T Consensus 155 DARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~~~~-----------~ 223 (435)
T KOG2484|consen 155 DARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQNSNS-----------K 223 (435)
T ss_pred eccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeecccccccccc-----------c
Confidence 99999999999999999888778999999999999999999999999999999999999999876542 3
Q ss_pred ccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEe
Q 011507 234 ILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLD 313 (484)
Q Consensus 234 ~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liD 313 (484)
..+++.|+|.+.|+..|++|++++.++++++|||||+|||||||+||+|.++++|.||+.||+|+.+|++.+|.+|.|+|
T Consensus 224 ~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llD 303 (435)
T KOG2484|consen 224 NLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLD 303 (435)
T ss_pred ccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheeccCCceecc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccCCCCChHHHHHHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccH
Q 011507 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDV 393 (484)
Q Consensus 314 TPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~ 393 (484)
+|||+++..++.+ .++|++|+++..+.||+.++..||.+|.++.+..+|.++.|..+++||..+|+++|++.+||+||+
T Consensus 304 sPgiv~~~~~~~~-~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~~~~~~Fl~~~ar~~G~~~kGG~pd~ 382 (435)
T KOG2484|consen 304 SPGIVPPSIDEKD-ALALRNCIPIGKVADPVTPVSCILKRCSKESRSVLYNIPSIRATDDFLEKFARRRGLLLKGGIPDV 382 (435)
T ss_pred CCceeecCCCccc-hhhhhcccccccccCccchHHHHHHHhhHHHHHHHhcCCCcchHHHHHHHHHHHHhhhhcCCCCcH
Confidence 9999999665544 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcccCCCCCCCC-----CchhhhhHHHhhhccchh
Q 011507 394 EAAARIILHDWNEGKIPYYTMPPARDQG-----IPSEARIVSELGKEFNVN 439 (484)
Q Consensus 394 ~~aa~~~l~d~~~gki~~~~~pp~~~~~-----~~~~~~iv~~~~~~~~~~ 439 (484)
.+||..+|+||+.|+|+||++||..+.. ...+.++|..|.++|++.
T Consensus 383 ~~AA~~vl~Dw~~Gki~y~~~pp~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 433 (435)
T KOG2484|consen 383 NAAAFAVLNDWRTGKIGYYTLPPTSEINDIEEIESNETQIVEELAKEFDLN 433 (435)
T ss_pred HHHHHHHHHhhccCceeeeeCCChhhhhhhhhHhhhhhHHHHHHhhhcccc
Confidence 9999999999999999999999874322 123367888898888764
No 2
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=1.3e-61 Score=477.83 Aligned_cols=304 Identities=39% Similarity=0.713 Sum_probs=272.9
Q ss_pred HhcCCCCccchHHHHHHhccccccccCCCcc-------------cCCCCCCcchHHHHHHHHHHhhhcCEEEEEEecCCC
Q 011507 92 RKLGLLEDDDVSMLADAANGKEENFGEGTST-------------ASGKNRDNSDRAFYKELVKVIEVSDVILEVLDARDP 158 (484)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~k~~~~el~kvie~sDvIleVlDARdP 158 (484)
||...+...+++.|...|..+...|++.... ..........+++|.+|.+||+.|||||.|||||||
T Consensus 147 RKRp~L~~s~le~L~k~a~e~~~~yee~~~~~~~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDP 226 (572)
T KOG2423|consen 147 RKRPKLTASSLEELSKAAEESDDKYEEKKLGDLREEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDP 226 (572)
T ss_pred hcCcccchhhHHHHHHHhhhhhhhhhhhccccchhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCC
Confidence 4445555567888877777666556554210 111123456678999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccc
Q 011507 159 LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTS 238 (484)
Q Consensus 159 l~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 238 (484)
+|+||..+|++++...+.|++|+||||+||||.++..+|+..|.++|||++|+++. .
T Consensus 227 mGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi-----------------------~ 283 (572)
T KOG2423|consen 227 MGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASI-----------------------N 283 (572)
T ss_pred cccccHHHHHHHhhcCCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhh-----------------------c
Confidence 99999999999998888999999999999999999999999999999999998653 3
Q ss_pred cccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 239 DCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 239 ~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
+.+|...|+++|++++.-...+..+.||+||||||||||+||+|...++|.|++.||-|+.+|++.+...|+|||||||+
T Consensus 284 nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvV 363 (572)
T KOG2423|consen 284 NSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVV 363 (572)
T ss_pred CccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCcc
Confidence 56888999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHH
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAAR 398 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~ 398 (484)
.|.. +.+...+|+++.+++.+.+|..++..+|++|..+.|...|+|+.|.+..+||+.||.+.|+|.+||.||+...++
T Consensus 364 yps~-dset~ivLkGvVRVenv~~pe~yi~~vl~R~k~ehl~rtYkI~~w~d~~dfle~La~k~GkLlKGGEPd~~~vsK 442 (572)
T KOG2423|consen 364 YPSS-DSETDIVLKGVVRVENVKNPEDYIDGVLERCKPEHLSRTYKISGWNDSTDFLEKLAIKQGKLLKGGEPDLVVVSK 442 (572)
T ss_pred CCCC-CchHHHHhhceeeeeecCCHHHHHHHHHHhhhHHHHHhhhCCCccccHHHHHHHHHHHhCccccCCCCchhHHHH
Confidence 9954 777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCcccCCCCCC
Q 011507 399 IILHDWNEGKIPYYTMPPARD 419 (484)
Q Consensus 399 ~~l~d~~~gki~~~~~pp~~~ 419 (484)
.+|+||+.|+||||..||..+
T Consensus 443 mvLnDwqRGkiP~FVpPp~~e 463 (572)
T KOG2423|consen 443 MVLNDWQRGKIPFFVPPPGLE 463 (572)
T ss_pred HHhhHhhcCCCceecCCCccc
Confidence 999999999999999998543
No 3
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=8.1e-48 Score=392.89 Aligned_cols=288 Identities=34% Similarity=0.509 Sum_probs=226.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEE
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFK 211 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~ 211 (484)
-.+||+||+|+|.|||||.|||||+|+..||++++.|+.+..++|..+||+||+||+|++....|..||+..+ +++.|+
T Consensus 162 LE~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~S 241 (562)
T KOG1424|consen 162 LEIWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFS 241 (562)
T ss_pred HHHHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEe
Confidence 3699999999999999999999999999999999999998888899999999999999999999999998876 555554
Q ss_pred ccchhh---hhhc--CCCccCC---CCC------Cc-ccccc--cccCHHH-----HHHHHHhhhhhcc-cccceEEEEe
Q 011507 212 CSTQEQ---RANL--GWKSSKT---AKP------SN-ILQTS--DCLGAET-----LIKLLKNYSRSHE-IKKSITVGVI 268 (484)
Q Consensus 212 ~~~~~~---~~~~--~~~~~~~---~~~------~~-~~s~~--~~~g~~~-----Ll~~Lk~~~~~~~-~~~~~~V~vv 268 (484)
|..... .+.+ .++.... ... .. .+... ++..... +++.+... ..++ .+..++||+|
T Consensus 242 A~~at~~~~~~~~~e~~r~~d~~~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~-~t~~~~~~~vtVG~V 320 (562)
T KOG1424|consen 242 ALAATEQLESKVLKEDRRSLDGVSRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPT-PTGERYKDVVTVGFV 320 (562)
T ss_pred cccccccccccchhhhhhcccchhhhccccccccchhhhhhhcccccchhhHHhhhhhhccccC-CCCcCCCceeEEEee
Confidence 432000 0000 0000000 000 00 00000 0000111 11111111 1111 1235999999
Q ss_pred cCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhHH
Q 011507 269 GLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVK 348 (484)
Q Consensus 269 G~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~ 348 (484)
|||||||||+||+|.|.+.+.|+.+||.|++.|.+.++..+.|+||||+++|........++|.++.+|+.+.|+..++.
T Consensus 321 GYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~GiLPIDQmrd~~~~~~ 400 (562)
T KOG1424|consen 321 GYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNGILPIDQLRDHYGAVG 400 (562)
T ss_pred cCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhcCccHHHhhcccchHH
Confidence 99999999999999999999999999999999999999999999999999998877778889999999999999999999
Q ss_pred HHHhhCCcchhhhhcCCCC--------CCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCCCC
Q 011507 349 EILNRCPANLLISLYKLPS--------FDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ 420 (484)
Q Consensus 349 ~il~~~~~~~l~~~~ki~~--------~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~~~~ 420 (484)
.+..+++...|..+|..+. -....++|..+|..+|++..+|.+|..+||+.+|+|+.+|++.|+..||..++
T Consensus 401 llaerIP~~~Le~~Y~~k~~e~~~~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL~~~~~PPg~~~ 480 (562)
T KOG1424|consen 401 LLAERIPRHVLERLYGHKPREDPEDSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKLLYCFPPPGYEP 480 (562)
T ss_pred HHHHhcCHHHHHHHhCCCcccccCCCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCeeeeeeCCCCCCc
Confidence 9999999999999996221 12567899999999999999998999999999999999999999999998554
Q ss_pred C
Q 011507 421 G 421 (484)
Q Consensus 421 ~ 421 (484)
.
T Consensus 481 ~ 481 (562)
T KOG1424|consen 481 Q 481 (562)
T ss_pred c
Confidence 3
No 4
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=1.1e-42 Score=347.93 Aligned_cols=254 Identities=32% Similarity=0.530 Sum_probs=210.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~ 212 (484)
.-+++++++++.||+||+|+|||+|++++++.+++++. ++|+|+|+||+||++.+.+..|+.|+++. .+++.++
T Consensus 13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vS- 87 (287)
T PRK09563 13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAIN- 87 (287)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEE-
Confidence 34789999999999999999999999999999988773 68999999999999887788999999754 3344433
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc--------cccceEEEEecCCCCchhHHHHHhhc
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~--------~~~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+....|.+.|++.+..++++.. ....++|+|||+||||||||||+|.+
T Consensus 88 ------------------------a~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~ 143 (287)
T PRK09563 88 ------------------------AKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAG 143 (287)
T ss_pred ------------------------CCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhc
Confidence 3455677888888877765431 23568999999999999999999999
Q ss_pred CccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChH--HHHHHhccccccccCCC---chhHHHHHhhCCcchh
Q 011507 285 CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND--ASIALRNCKRIEKLDDP---VGPVKEILNRCPANLL 359 (484)
Q Consensus 285 ~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~--~~~~L~~~~~i~~l~d~---~~~v~~il~~~~~~~l 359 (484)
.+.+.|++.||+|++.+++.++.+++|+|||||++|...+.. ..+++.+|.... +.++ ..++..++.++.+..+
T Consensus 144 ~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~-~~~~~~~~~~ll~~l~~~~~~~l 222 (287)
T PRK09563 144 KKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDE-ALDLEEVAIFALEYLSKHYPERL 222 (287)
T ss_pred CCccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchh-hcChHHHHHHHHHHHHhhCHHHH
Confidence 999999999999999999999999999999999998765543 346677776532 2232 3344455666777788
Q ss_pred hhhcCCCCC-CCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCCC
Q 011507 360 ISLYKLPSF-DSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPA 417 (484)
Q Consensus 360 ~~~~ki~~~-~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~ 417 (484)
+..|+++.+ .+.++||..+|+++|++.+||.||+++||+.+|+||+.|++++|++...
T Consensus 223 ~~~y~~~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ld~~ 281 (287)
T PRK09563 223 KERYKLDELPEDILELLEAIARKRGALRKGGEIDYERASELLLNEFRNGKLGKITLETP 281 (287)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEEccCC
Confidence 999999765 4889999999999999999999999999999999999999999987643
No 5
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.9e-42 Score=344.44 Aligned_cols=251 Identities=33% Similarity=0.511 Sum_probs=210.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEEc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFKC 212 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~~ 212 (484)
..+++++++++.||+||+|+|||+|++++++.+++++ .++|+|+|+||+||++++....|.+|++... +++.+
T Consensus 10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~i-- 83 (276)
T TIGR03596 10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAI-- 83 (276)
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEE--
Confidence 4678999999999999999999999999999999887 2689999999999999887889999997532 33333
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc--------cccceEEEEecCCCCchhHHHHHhhc
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~--------~~~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
|+....|.+.|++.+..+++... ....++|+|||+||||||||||+|.+
T Consensus 84 -----------------------Sa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~ 140 (276)
T TIGR03596 84 -----------------------NAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAG 140 (276)
T ss_pred -----------------------ECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 33455678889888887765432 12468999999999999999999999
Q ss_pred CccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCCh--HHHHHHhccccccccCCCc---hhHHHHHhhCCcchh
Q 011507 285 CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEN--DASIALRNCKRIEKLDDPV---GPVKEILNRCPANLL 359 (484)
Q Consensus 285 ~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~--~~~~~L~~~~~i~~l~d~~---~~v~~il~~~~~~~l 359 (484)
.+.+.|++.||+|+..+++.++.++.|+||||+++|...+. ...+++.+|.....+ ++. ..+..++.++....+
T Consensus 141 ~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~-~~~~~~~~~~~~l~~~~~~~l 219 (276)
T TIGR03596 141 KKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEAL-DLEDVALFLLEYLLEHYPERL 219 (276)
T ss_pred CCccccCCCCCeecceEEEEeCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccC-ChHHHHHHHHHHHHhhCHHHH
Confidence 99999999999999999999988999999999999965543 345677777654322 332 344556677777889
Q ss_pred hhhcCCCCCC-CHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccC
Q 011507 360 ISLYKLPSFD-SVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTM 414 (484)
Q Consensus 360 ~~~~ki~~~~-~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~ 414 (484)
+..|+++.+. +.++||+.+|+++|++.+||.||+.+||+.+|+||+.|+++++++
T Consensus 220 ~~~y~i~~~~~~~~~~l~~~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~l 275 (276)
T TIGR03596 220 KERYKLDELPEDIVELLEAIAKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITL 275 (276)
T ss_pred HHHhCcCCCCCCHHHHHHHHHHHhCccccCCccCHHHHHHHHHHHHHcCCCCceec
Confidence 9999998765 889999999999999999999999999999999999999999986
No 6
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=7.3e-43 Score=353.58 Aligned_cols=260 Identities=34% Similarity=0.570 Sum_probs=207.7
Q ss_pred cchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEE
Q 011507 130 NSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVA 209 (484)
Q Consensus 130 ~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~ 209 (484)
.....++++++++++.+|+|++|+|||||++|+++.+++++. +++.++|+||+||+|+..+.+|.+||.+.++..+
T Consensus 19 g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~----~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~ 94 (322)
T COG1161 19 GHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK----EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKP 94 (322)
T ss_pred CchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc----cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCcc
Confidence 445678999999999999999999999999999999999985 5677999999999999999999999999875544
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHH--------HHHHhhhhhcccccceEEEEecCCCCchhHHHHH
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLI--------KLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINS 281 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll--------~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~ 281 (484)
+..+.. ...|...+. +.++.+.+.+..+...+|+|||+||||||||||+
T Consensus 95 ~~v~~~-----------------------~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~ 151 (322)
T COG1161 95 IFVSAK-----------------------SRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINR 151 (322)
T ss_pred EEEEee-----------------------cccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHH
Confidence 432211 111111122 5556655555556779999999999999999999
Q ss_pred hhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhHHHHHhhCC-----c
Q 011507 282 LKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCP-----A 356 (484)
Q Consensus 282 L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~-----~ 356 (484)
|.+++.+.||+.||+|++.|++.++..+.|+|||||+++...+. ...+.+......+.|+..++..+..++. .
T Consensus 152 L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~~--~~v~~~l~~~~~Ik~~~~~~~~v~~~~~~~~~~~ 229 (322)
T COG1161 152 LLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDDD--ELVLLKLAPKGEIKDPVLPADEVAERLLGGLLID 229 (322)
T ss_pred HhcccceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccch--HHHhhccccccccCccccChHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999976553 4455565666677888777666544332 1
Q ss_pred chhhhhcCCCCCC-------CHHHHHHHHHHHhC-ccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCC
Q 011507 357 NLLISLYKLPSFD-------SVDDFLQKVATVRG-KLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPAR 418 (484)
Q Consensus 357 ~~l~~~~ki~~~~-------~~~e~l~~la~~~g-~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~~ 418 (484)
..+-..|.++.|. +.++++..++.++| .+.+||.+|+.+|+..+++||+.|++++|++++..
T Consensus 230 ~~~~~~~~~~~y~~~~~~~~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~~~~~~~ 299 (322)
T COG1161 230 EHYGEKLNITRYESNPIHRTDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWFSLEEPE 299 (322)
T ss_pred hhhhHhhCCcccccccccccCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCcceeecCCcc
Confidence 2233334443222 67889999999999 78889999999999999999999999999988753
No 7
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=100.00 E-value=8.1e-34 Score=262.89 Aligned_cols=171 Identities=70% Similarity=1.082 Sum_probs=141.9
Q ss_pred CEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCcc
Q 011507 147 DVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSS 226 (484)
Q Consensus 147 DvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~ 226 (484)
|+|++|+|||+|++++++.+++++.-...++|+|+|+||+||++++.+..|++||++.++++.|.++.+...........
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 89999999999999999999998521124699999999999999999999999999999999998765533222211000
Q ss_pred C-CCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe
Q 011507 227 K-TAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL 305 (484)
Q Consensus 227 ~-~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l 305 (484)
. ......+.+.....|.+.|++.+++|.........++|+|+|+||||||||||+|.+.+.+.|++.||+|++.+++.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~ 160 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL 160 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe
Confidence 0 011223566778889999999999988776666779999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC
Q 011507 306 DKNVKLLDCPGV 317 (484)
Q Consensus 306 ~~~i~liDTPGi 317 (484)
+.++.|+|||||
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 999999999997
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=100.00 E-value=4e-33 Score=254.54 Aligned_cols=157 Identities=49% Similarity=0.833 Sum_probs=136.7
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
++|++++++|+|++|+|+++|+++++..+++.+.....++|+|+|+||+||++++.+..|+.++++.++...|
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~------- 73 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAF------- 73 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEE-------
Confidence 4789999999999999999999999999999987644468999999999999998889999999988876544
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCee
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT 297 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T 297 (484)
+.|+..+.|.+.|++.|..++.........+|+++|.||||||||||+|.+...+.++++||+|
T Consensus 74 ----------------~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T 137 (157)
T cd01858 74 ----------------HASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET 137 (157)
T ss_pred ----------------EeeccccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee
Confidence 2445667788999999988764322124678999999999999999999999999999999999
Q ss_pred eeeEEEEeCCcEEEEecCCC
Q 011507 298 RSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 298 r~~~~~~l~~~i~liDTPGi 317 (484)
++.+++.++.+++|+|||||
T Consensus 138 ~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 138 KVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred EeEEEEEcCCCEEEEECcCC
Confidence 99999999888999999997
No 9
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.96 E-value=3.5e-28 Score=218.09 Aligned_cols=140 Identities=41% Similarity=0.675 Sum_probs=120.4
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccch
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
|+++++.++.+|+||+|+|+|+|+++.+..+.+++.....++|+|+|+||+||++++.+..|..++......+.+.
T Consensus 2 ~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~i---- 77 (141)
T cd01857 2 WRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFF---- 77 (141)
T ss_pred HHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEE----
Confidence 7899999999999999999999999999999998875435799999999999999888889999998764333221
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCC
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG 295 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg 295 (484)
|+.... .+++++|.||||||||||+|.+...+.++..||
T Consensus 78 --------------------Sa~~~~---------------------~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~ 116 (141)
T cd01857 78 --------------------SALKEN---------------------ATIGLVGYPNVGKSSLINALVGKKKVSVSATPG 116 (141)
T ss_pred --------------------EecCCC---------------------cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCC
Confidence 111111 169999999999999999999999889999999
Q ss_pred eeeeeEEEEeCCcEEEEecCCCccC
Q 011507 296 LTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 296 ~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
+|++.+.+.++..+.|+||||+.+|
T Consensus 117 ~~~~~~~~~~~~~~~i~DtpG~~~p 141 (141)
T cd01857 117 KTKHFQTIFLTPTITLCDCPGLVFP 141 (141)
T ss_pred cccceEEEEeCCCEEEEECCCcCCC
Confidence 9999999999889999999999876
No 10
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.95 E-value=3.4e-27 Score=229.71 Aligned_cols=249 Identities=29% Similarity=0.399 Sum_probs=169.5
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe-EEE-Ecc
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA-VAF-KCS 213 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~-v~f-~~~ 213 (484)
.+.+.+.+..+|+||||.|||.|+++|++.+++.+ +.|+.|+||||+||++..+....++||+...-. ..+ .|.
T Consensus 37 lr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~----~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~~~~~~c~ 112 (335)
T KOG2485|consen 37 LRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFL----PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLESYIKLDCN 112 (335)
T ss_pred HHHHHhhcccccEEEEeeccccCCccccHHHHHhc----CCCceEEEEecccccCchhhhHHHHHHHhhcccchhhhhhh
Confidence 46788899999999999999999999999999887 368999999999999988888888998766211 111 110
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH----hhhhhcc-cccceEEEEecCCCCchhHHHHHhhc----
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK----NYSRSHE-IKKSITVGVIGLPNVGKSSLINSLKR---- 284 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk----~~~~~~~-~~~~~~V~vvG~pNvGKSSLIN~L~~---- 284 (484)
.. ...++..++..+- +..+... ......|+|||.||||||||||++..
T Consensus 113 ~~-----------------------~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lr 169 (335)
T KOG2485|consen 113 KD-----------------------CNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLR 169 (335)
T ss_pred hh-----------------------hhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhh
Confidence 00 0001112222221 1111111 34578999999999999999999974
Q ss_pred -CccceecCCCCeeeeeEE-EEe--CCcEEEEecCCCccCCCCCh--HHHHHHhccccccccCCCchhHH---HHHhhCC
Q 011507 285 -CHVANVGATPGLTRSMQE-VQL--DKNVKLLDCPGVVMLKSGEN--DASIALRNCKRIEKLDDPVGPVK---EILNRCP 355 (484)
Q Consensus 285 -~~~~~v~~~pg~Tr~~~~-~~l--~~~i~liDTPGi~~~~~~~~--~~~~~L~~~~~i~~l~d~~~~v~---~il~~~~ 355 (484)
.+++.||+.||+|+..++ +.+ ...++++||||++.|...+. ...++|.+|.. +++.++..-+. .+|++..
T Consensus 170 k~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vk-d~~V~~~~~adylL~~lN~~~ 248 (335)
T KOG2485|consen 170 KKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVK-DHLVGEETIADYLLYLLNSHS 248 (335)
T ss_pred hccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhccccc-ccccCHHHHHHHHHHHHhccC
Confidence 367899999999999887 444 45799999999999966543 45566666653 34455544333 3445555
Q ss_pred cchhhhhcCCCC--CCCHHHHHHHHHHHhCcccc-----CC------cccHHHHHHHHHHHHHcCCCCcc
Q 011507 356 ANLLISLYKLPS--FDSVDDFLQKVATVRGKLKK-----GG------IVDVEAAARIILHDWNEGKIPYY 412 (484)
Q Consensus 356 ~~~l~~~~ki~~--~~~~~e~l~~la~~~g~l~k-----gg------~~d~~~aa~~~l~d~~~gki~~~ 412 (484)
.......++... ..+.+.-+..++.++.+..+ |. .+.+-++++.++.-+++|.++-+
T Consensus 249 ~~~y~~~l~~~~~~~dd~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~ 318 (335)
T KOG2485|consen 249 DFSYVKDLKPGSTPADDIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPE 318 (335)
T ss_pred cchhHHHhccCCCccccHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccce
Confidence 544444443322 34556666667776654432 21 23577899999999999987644
No 11
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=3.6e-27 Score=214.79 Aligned_cols=146 Identities=52% Similarity=0.823 Sum_probs=118.7
Q ss_pred CEEEEEEecCCCCCCCCHHHH-HHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCc
Q 011507 147 DVILEVLDARDPLGTRCIDME-KMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKS 225 (484)
Q Consensus 147 DvIleVlDARdPl~~r~~~le-~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~ 225 (484)
|+||+|+|+++|.++.+..++ ..+.. .++|+|+|+||+||++++.+..|+.+++..++...+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii--------------- 63 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPF--------------- 63 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEE---------------
Confidence 899999999999999999888 34432 479999999999999998888999877665443222
Q ss_pred cCCCCCCcccccccccCHHHHHHHHHhhhh--------hcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCee
Q 011507 226 SKTAKPSNILQTSDCLGAETLIKLLKNYSR--------SHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT 297 (484)
Q Consensus 226 ~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~--------~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T 297 (484)
++|+..+.|.+.|++.+..... ........+++++|.||||||||||+|.+.+.+.+++.||+|
T Consensus 64 --------~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t 135 (155)
T cd01849 64 --------KISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTT 135 (155)
T ss_pred --------EEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcc
Confidence 2344567788888887754211 111235688999999999999999999999988999999999
Q ss_pred eeeEEEEeCCcEEEEecCCC
Q 011507 298 RSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 298 r~~~~~~l~~~i~liDTPGi 317 (484)
+..+++.++.++.|+|||||
T Consensus 136 ~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 136 TSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred cceEEEEecCCEEEEECCCC
Confidence 99999999889999999997
No 12
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.94 E-value=3.5e-26 Score=211.77 Aligned_cols=158 Identities=34% Similarity=0.586 Sum_probs=129.8
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEc
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~ 212 (484)
+..++++++.+++||+||+|+|+++|++..+..+...+ .++++|+|+||+||++.+.+..|++|++.....+.
T Consensus 7 ~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi--- 79 (171)
T cd01856 7 AKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVL--- 79 (171)
T ss_pred HHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEE---
Confidence 45678999999999999999999999998777665554 35899999999999988777789998876543322
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh-------cccccceEEEEecCCCCchhHHHHHhhcC
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS-------HEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~-------~~~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+|+....|.+.|.+.|..+.+. ......++++++|.||||||||+|+|.+.
T Consensus 80 ---------------------~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~ 138 (171)
T cd01856 80 ---------------------FVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGK 138 (171)
T ss_pred ---------------------EEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 23445667889999988876531 11224578999999999999999999999
Q ss_pred ccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 286 HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 286 ~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
..+.+++.||+|+..+.+.++..+.++||||++
T Consensus 139 ~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~~ 171 (171)
T cd01856 139 KVAKVGNKPGVTKGIQWIKISPGIYLLDTPGIL 171 (171)
T ss_pred CceeecCCCCEEeeeEEEEecCCEEEEECCCCC
Confidence 888999999999999999888889999999985
No 13
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.93 E-value=9.2e-25 Score=198.82 Aligned_cols=154 Identities=45% Similarity=0.706 Sum_probs=124.8
Q ss_pred HHHHHHHHhhh-cCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 011507 135 FYKELVKVIEV-SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (484)
Q Consensus 135 ~~~el~kvie~-sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~ 212 (484)
+|+++.+.+.. +|+||+|+|+++|.......+..++.. .++|+|+|+||+||++.+....|..+.... .|.+.
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~--- 75 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVY--- 75 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEE---
Confidence 46666666665 999999999999998888777776643 368999999999999876677776444332 23333
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecC
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGA 292 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~ 292 (484)
+|+.++.|.+.|++.|..+++... ...+++++|.||||||||+|+|.+...+.+++
T Consensus 76 ----------------------iSa~~~~gi~~L~~~l~~~~~~~~--~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~ 131 (156)
T cd01859 76 ----------------------VSAKERLGTKILRRTIKELAKIDG--KEGKVGVVGYPNVGKSSIINALKGRHSASTSP 131 (156)
T ss_pred ----------------------EEccccccHHHHHHHHHHHHhhcC--CCcEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 344667789999999998887533 45789999999999999999999988888999
Q ss_pred CCCeeeeeEEEEeCCcEEEEecCCC
Q 011507 293 TPGLTRSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 293 ~pg~Tr~~~~~~l~~~i~liDTPGi 317 (484)
.+|+|++.+.+.++..+.|+|||||
T Consensus 132 ~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 132 SPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred CCCeeeeeEEEEcCCCEEEEECcCC
Confidence 9999999998888889999999997
No 14
>PF08701 GN3L_Grn1: GNL3L/Grn1 putative GTPase; InterPro: IPR014813 Grn1 (yeast) and GNL3L (human) are putative GTPases which are required for growth and play a role in processing of nucleolar pre-rRNA []. This family contains a potential nuclear localisation signal.
Probab=99.92 E-value=2.8e-25 Score=176.20 Aligned_cols=73 Identities=56% Similarity=0.780 Sum_probs=63.7
Q ss_pred hhhhhhHHHHHHhhhhhHHHHhhccccCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011507 16 RKKYKIIKKVKEHHKKKAKEAKKLNLSGKRKVEKDPGIPNDWPFKEQELKALEARRARALKELEQKKAARKERA 89 (484)
Q Consensus 16 ~~r~ki~kkv~eh~rk~~k~akk~~~~~~~k~~kd~gipn~~pfke~~l~~~~~~~~~~~e~~~~~k~~~~~~~ 89 (484)
++||+|+|||+||+||+||+|||++.| +++.+|||||||+|||||+||+||++.+++++|+.+++++.++...
T Consensus 1 r~kykI~KKv~eh~RK~rK~aKK~~~~-k~k~kKdpgIPN~~PfKe~iL~eie~~k~~~ee~k~~~ke~rk~~~ 73 (79)
T PF08701_consen 1 RQKYKIEKKVKEHNRKLRKEAKKNPTW-KSKKKKDPGIPNSFPFKEEILKEIEEKKERAEEEKEKQKEARKKEK 73 (79)
T ss_pred CchHHHHHHHHHHhHHHHHHHhcCccc-cCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999976 5666899999999999999999999999998777776666555443
No 15
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=9.5e-26 Score=219.75 Aligned_cols=175 Identities=24% Similarity=0.287 Sum_probs=134.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~-----~~~~~~L~ 332 (484)
+++.|+|||+||||||||+|+|.|.+++.||+.|+|||+...... +.+++|+|||||+.|...- ..+..++.
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999776432 5699999999999995432 23444556
Q ss_pred ccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcc
Q 011507 333 NCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYY 412 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~ 412 (484)
.++.+.++.|... .+...++ .++..+...+.|.+
T Consensus 85 dvDlilfvvd~~~---------------------~~~~~d~-------------------------~il~~lk~~~~pvi 118 (298)
T COG1159 85 DVDLILFVVDADE---------------------GWGPGDE-------------------------FILEQLKKTKTPVI 118 (298)
T ss_pred cCcEEEEEEeccc---------------------cCCccHH-------------------------HHHHHHhhcCCCeE
Confidence 6665555444321 1222222 23333444556777
Q ss_pred cCCCCCCCCCchh--hhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCcccccccccccccc
Q 011507 413 TMPPARDQGIPSE--ARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNVY 482 (484)
Q Consensus 413 ~~pp~~~~~~~~~--~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~~ 482 (484)
...++.|...+.. ..++......+++.++++.||..+.++..+.+.+ ..++|+||++||+||+||++..
T Consensus 119 l~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i-~~~Lpeg~~~yp~d~itD~~~r 189 (298)
T COG1159 119 LVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEII-KEYLPEGPWYYPEDQITDRPER 189 (298)
T ss_pred EEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHH-HHhCCCCCCcCChhhccCChHH
Confidence 7777777554433 4667777888889999999999999999999999 9999999999999999999864
No 16
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.92 E-value=1.5e-24 Score=203.94 Aligned_cols=152 Identities=28% Similarity=0.462 Sum_probs=117.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHH-hc--CCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLR-EE--LPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~-~~--~p~ 207 (484)
|...+...++.+|+||+|+|+++|.++....+... ..++|+|+|+||+||++.+. +..|...+. +. ++.
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~----~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF----GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKP 99 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccchhHHHh----cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCc
Confidence 57778888999999999999999987776666222 24689999999999986543 445652221 11 110
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCcc
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHV 287 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~ 287 (484)
. ....+|+..+.|.+.|++.|..+++ ...++++||.||||||||||+|.+...
T Consensus 100 ~----------------------~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 100 K----------------------DVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred c----------------------cEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 0 0123456778899999999998875 346899999999999999999998542
Q ss_pred --------ceecCCCCeeeeeEEEEeCCcEEEEecCCC
Q 011507 288 --------ANVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 288 --------~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi 317 (484)
+.++..||||++.+.+.++.++.|+|||||
T Consensus 153 ~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 153 GKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred cccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 468899999999999999878999999997
No 17
>PRK13796 GTPase YqeH; Provisional
Probab=99.90 E-value=6.4e-23 Score=211.69 Aligned_cols=156 Identities=30% Similarity=0.470 Sum_probs=121.8
Q ss_pred HHHHHHHHHhhhcC-EEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCeE
Q 011507 134 AFYKELVKVIEVSD-VILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPAV 208 (484)
Q Consensus 134 ~~~~el~kvie~sD-vIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~----e~~~~wl~~l~~~~p~v 208 (484)
.|.+ +.+.+..+| +|++|+|++|+.++..+.+.+++ +++++++|+||+||+|+ +.+..|+.++.+.+...
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~ 132 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLR 132 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCC
Confidence 4444 445555555 99999999999999988888765 36899999999999874 34677988766543210
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcC---
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC--- 285 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~--- 285 (484)
+ .....+|+..+.|.+.|++.|..+.. ...++|||.||||||||||+|.+.
T Consensus 133 -~-------------------~~v~~vSAk~g~gI~eL~~~I~~~~~------~~~v~vvG~~NvGKSTLiN~L~~~~~~ 186 (365)
T PRK13796 133 -P-------------------VDVVLISAQKGHGIDELLEAIEKYRE------GRDVYVVGVTNVGKSTLINRIIKEITG 186 (365)
T ss_pred -c-------------------CcEEEEECCCCCCHHHHHHHHHHhcC------CCeEEEEcCCCCcHHHHHHHHHhhccC
Confidence 0 00123556678899999999987643 357999999999999999999854
Q ss_pred --ccceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 286 --HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 286 --~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
+.+.+++.||||++.+++.++.+..|+|||||...
T Consensus 187 ~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 187 EKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred ccceEEecCCCCccceeEEEEcCCCcEEEECCCcccc
Confidence 35678999999999999999888999999999855
No 18
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.89 E-value=1.1e-22 Score=209.54 Aligned_cols=159 Identities=30% Similarity=0.447 Sum_probs=126.2
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCe
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPA 207 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~ 207 (484)
...|.+.+..+...+|+|++|+|++|+.++..+.+.+.+ +++++++|+||+||+|++ .+..|+..+.+.+..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~ 125 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL 125 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 445666677777899999999999999999999888875 368999999999998764 466777533333211
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCc-
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH- 286 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~- 286 (484)
.. .....+|+..+.|.+.|++.|.++.. ...|++||.||||||||||+|.+..
T Consensus 126 ~~--------------------~~i~~vSAk~g~gv~eL~~~l~~~~~------~~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 126 KP--------------------VDIILVSAKKGNGIDELLDKIKKARN------KKDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred Cc--------------------CcEEEecCCCCCCHHHHHHHHHHHhC------CCeEEEECCCCCCHHHHHHHHHhhcc
Confidence 00 00123566788899999999987632 3689999999999999999999853
Q ss_pred ----cceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 287 ----VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 287 ----~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
.+.+++.||||+..+.+.++.++.|+||||+..+
T Consensus 180 ~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~ 217 (360)
T TIGR03597 180 GDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINS 217 (360)
T ss_pred CCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCCh
Confidence 5789999999999999999888999999999876
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.89 E-value=3.2e-22 Score=205.00 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=156.4
Q ss_pred CcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeE
Q 011507 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAV 208 (484)
Q Consensus 129 ~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v 208 (484)
+...+.+..+...+++.||+||+|+|+|.-++..+..+.++++. .+||+|||+||+|-...+. .-.+|+.--+..
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e~--~~~efyslG~g~- 141 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAEE--LAYEFYSLGFGE- 141 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhhh--hHHHHHhcCCCC-
Confidence 56788999999999999999999999999999999999999984 4799999999999763322 122333322211
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc---ccc---cceEEEEecCCCCchhHHHHHh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH---EIK---KSITVGVIGLPNVGKSSLINSL 282 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~---~~~---~~~~V~vvG~pNvGKSSLIN~L 282 (484)
..++|+..+.|.+.|++.+..+++.. ... ..++|+|||.||||||||+|+|
T Consensus 142 -----------------------~~~ISA~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~i 198 (444)
T COG1160 142 -----------------------PVPISAEHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAI 198 (444)
T ss_pred -----------------------ceEeehhhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHh
Confidence 12466788899999999998887311 111 3699999999999999999999
Q ss_pred hcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC--------ChHHHHHHhccccccccCCCchhHHH--
Q 011507 283 KRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG--------ENDASIALRNCKRIEKLDDPVGPVKE-- 349 (484)
Q Consensus 283 ~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~--------~~~~~~~L~~~~~i~~l~d~~~~v~~-- 349 (484)
++...+.|++.|||||+.....+ +..+.|+||-|+-....- ......++..++.+..+.|...++.+
T Consensus 199 lgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD 278 (444)
T COG1160 199 LGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD 278 (444)
T ss_pred ccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH
Confidence 99999999999999999887654 567899999999654321 12334455555555444454433322
Q ss_pred -----HHhhCCcchhhhhcCCCCCC
Q 011507 350 -----ILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 350 -----il~~~~~~~l~~~~ki~~~~ 369 (484)
+....++..+.++|+.+.+.
T Consensus 279 ~~ia~~i~~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 279 LRIAGLIEEAGRGIVIVVNKWDLVE 303 (444)
T ss_pred HHHHHHHHHcCCCeEEEEEccccCC
Confidence 23344566777778877655
No 20
>PRK12289 GTPase RsgA; Reviewed
Probab=99.87 E-value=9e-22 Score=201.22 Aligned_cols=145 Identities=30% Similarity=0.388 Sum_probs=116.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEccchhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCSTQEQRA 219 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~~~~~~~~ 219 (484)
.+.++|+||.|+|+.+|... ...+++++... ..+.|+|||+||+||++.+.+..|..+|... ++.+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~-~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~----------- 153 (352)
T PRK12289 86 PVANADQILLVFALAEPPLD-PWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPL----------- 153 (352)
T ss_pred hhhcCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEE-----------
Confidence 47899999999999988532 23566766532 2478999999999999888788999888654 3322
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCC----
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG---- 295 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg---- 295 (484)
++|+.++.|.+.|++.|.. ..++|+|.||||||||||+|.+.....|+..+|
T Consensus 154 --------------~iSA~tg~GI~eL~~~L~~----------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~r 209 (352)
T PRK12289 154 --------------FISVETGIGLEALLEQLRN----------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGR 209 (352)
T ss_pred --------------EEEcCCCCCHHHHhhhhcc----------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCC
Confidence 2345667788888888753 248999999999999999999988888999999
Q ss_pred ---eeeeeEEEEeCCcEEEEecCCCccCCC
Q 011507 296 ---LTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 296 ---~Tr~~~~~~l~~~i~liDTPGi~~~~~ 322 (484)
||++.+.+.++.+.+|+|||||..+..
T Consensus 210 GrHTT~~~~l~~l~~g~~liDTPG~~~~~l 239 (352)
T PRK12289 210 GRHTTRHVELFELPNGGLLADTPGFNQPDL 239 (352)
T ss_pred CCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence 999999999977779999999987754
No 21
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.84 E-value=5.1e-20 Score=180.22 Aligned_cols=145 Identities=24% Similarity=0.282 Sum_probs=109.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
.+.++|.++.|.|+++|..+... +++++... ..+.++|||+||+||.+...+ ..|..++.+..-. .|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~~~-l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~-v~--------- 101 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSLNQ-LDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQ-VL--------- 101 (245)
T ss_pred ccccCCEEEEEEECCCCCCCHHH-HHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCe-EE---------
Confidence 57889999999999999866543 56655422 247899999999999865443 4788888653211 12
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCC-----
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP----- 294 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p----- 294 (484)
..|+.++.|.+.|++.|.+ ..++++|.||||||||||+|.+.....++..+
T Consensus 102 --------------~~SAktg~gi~eLf~~l~~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~ 157 (245)
T TIGR00157 102 --------------MTSSKNQDGLKELIEALQN----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGL 157 (245)
T ss_pred --------------EEecCCchhHHHHHhhhcC----------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCC
Confidence 2344567788888887753 36899999999999999999988766665554
Q ss_pred --CeeeeeEEEEeCCcEEEEecCCCccCCC
Q 011507 295 --GLTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 295 --g~Tr~~~~~~l~~~i~liDTPGi~~~~~ 322 (484)
+||++.+.+.+ .+.+|+||||+.....
T Consensus 158 G~hTT~~~~l~~l-~~~~liDtPG~~~~~l 186 (245)
T TIGR00157 158 GKHTTTHVELFHF-HGGLIADTPGFNEFGL 186 (245)
T ss_pred CCCcCCceEEEEc-CCcEEEeCCCccccCC
Confidence 49999999988 4668999999987654
No 22
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=3.8e-19 Score=187.77 Aligned_cols=209 Identities=23% Similarity=0.305 Sum_probs=148.4
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVA 209 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~ 209 (484)
....+..+....+..+|+||+|+|+++++......+.+++... ++|+|+|+||+|+...+... ..+++-.+ +.+
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~--~~piilVvNK~D~~~~~~~~--~~~~~lg~~~~~- 138 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKS--GKPVILVANKIDGKKEDAVA--AEFYSLGFGEPI- 138 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh--CCCEEEEEECccCCcccccH--HHHHhcCCCCeE-
Confidence 4567888889999999999999999999887777788888753 69999999999998654321 12222112 222
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc-----cccceEEEEecCCCCchhHHHHHhhc
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE-----IKKSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~-----~~~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
.+|+..+.|.+.|++.+....+... ....++|+++|.||||||||+|+|.+
T Consensus 139 ------------------------~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~ 194 (429)
T TIGR03594 139 ------------------------PISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLG 194 (429)
T ss_pred ------------------------EEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHC
Confidence 3455677888999988887764322 12458999999999999999999999
Q ss_pred CccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCCh--------HHHHHHhccccccccCCCchhHH----H
Q 011507 285 CHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN--------DASIALRNCKRIEKLDDPVGPVK----E 349 (484)
Q Consensus 285 ~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~--------~~~~~L~~~~~i~~l~d~~~~v~----~ 349 (484)
...+.+++.||+|++.....+ +..+.|+||||+........ .....++.++.+..+.|....+. .
T Consensus 195 ~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~ 274 (429)
T TIGR03594 195 EERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR 274 (429)
T ss_pred CCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH
Confidence 888889999999998765443 45789999999976533211 11235667776666655433221 1
Q ss_pred H---HhhCCcchhhhhcCCCCC
Q 011507 350 I---LNRCPANLLISLYKLPSF 368 (484)
Q Consensus 350 i---l~~~~~~~l~~~~ki~~~ 368 (484)
+ +.....+.+.+.||+|..
T Consensus 275 ~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 275 IAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred HHHHHHHcCCcEEEEEECcccC
Confidence 2 223345677788998866
No 23
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1.2e-18 Score=184.37 Aligned_cols=209 Identities=23% Similarity=0.282 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~ 211 (484)
...+..+....+..+|+||+|+|+++++......+.+++... ++|+|+|+||+|+...+. ...+++.-.++.+
T Consensus 67 ~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D~~~~~~--~~~~~~~lg~~~~--- 139 (435)
T PRK00093 67 EKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVDGPDEEA--DAYEFYSLGLGEP--- 139 (435)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECccCccchh--hHHHHHhcCCCCC---
Confidence 344666677888999999999999999887777787887754 789999999999865322 1122222122111
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc----cccceEEEEecCCCCchhHHHHHhhcCcc
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE----IKKSITVGVIGLPNVGKSSLINSLKRCHV 287 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~----~~~~~~V~vvG~pNvGKSSLIN~L~~~~~ 287 (484)
..+|+..+.|.+.|++.+........ ....++|+|+|.||||||||+|+|++...
T Consensus 140 ---------------------~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~ 198 (435)
T PRK00093 140 ---------------------YPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEER 198 (435)
T ss_pred ---------------------EEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 13455677888888888866332211 12469999999999999999999999988
Q ss_pred ceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCCh--------HHHHHHhccccccccCCCchhH-------HH
Q 011507 288 ANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN--------DASIALRNCKRIEKLDDPVGPV-------KE 349 (484)
Q Consensus 288 ~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~--------~~~~~L~~~~~i~~l~d~~~~v-------~~ 349 (484)
+.+++.||+|++.....+ +..+.|+||||+........ .....+..++.+..+.|..... ..
T Consensus 199 ~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~ 278 (435)
T PRK00093 199 VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAG 278 (435)
T ss_pred eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH
Confidence 889999999998765433 45799999999976543221 1123456666665555543221 12
Q ss_pred HHhhCCcchhhhhcCCCCC
Q 011507 350 ILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 350 il~~~~~~~l~~~~ki~~~ 368 (484)
++.....+.+..+||+|..
T Consensus 279 ~~~~~~~~~ivv~NK~Dl~ 297 (435)
T PRK00093 279 LALEAGRALVIVVNKWDLV 297 (435)
T ss_pred HHHHcCCcEEEEEECccCC
Confidence 2333445677788998865
No 24
>PRK12288 GTPase RsgA; Reviewed
Probab=99.80 E-value=9.7e-19 Score=178.86 Aligned_cols=146 Identities=25% Similarity=0.253 Sum_probs=110.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhc-CCeEEEEccc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREE-LPAVAFKCST 214 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~-~p~v~f~~~~ 214 (484)
.-+..++|.++.|.+...+++. ..+++++... ..+.+.|+|+||+||++.+ .+..|..+|... ++.+.
T Consensus 115 q~iaANvD~vlIV~s~~p~~s~--~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~----- 187 (347)
T PRK12288 115 KPIAANIDQIVIVSAVLPELSL--NIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLM----- 187 (347)
T ss_pred ceEEEEccEEEEEEeCCCCCCH--HHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEE-----
Confidence 3456889999988886533332 3556665432 2468999999999999854 467788877654 33332
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCC
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP 294 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p 294 (484)
+|+....|.+.|.+.|.+ ..++|+|.||||||||||+|.+.....|+..+
T Consensus 188 --------------------vSA~tg~GideL~~~L~~----------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is 237 (347)
T PRK12288 188 --------------------VSSHTGEGLEELEAALTG----------RISIFVGQSGVGKSSLINALLPEAEILVGDVS 237 (347)
T ss_pred --------------------EeCCCCcCHHHHHHHHhh----------CCEEEECCCCCCHHHHHHHhccccceeecccc
Confidence 344567788999888864 24789999999999999999999888888887
Q ss_pred C-------eeeeeEEEEeCCcEEEEecCCCccCCC
Q 011507 295 G-------LTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 295 g-------~Tr~~~~~~l~~~i~liDTPGi~~~~~ 322 (484)
+ ||++.+++.++.+..|+|||||-....
T Consensus 238 ~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l 272 (347)
T PRK12288 238 DNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGL 272 (347)
T ss_pred CcCCCCcCceeeEEEEEecCCCEEEECCCCCcccC
Confidence 6 799999999987888999999976543
No 25
>PRK00098 GTPase RsgA; Reviewed
Probab=99.80 E-value=3.8e-19 Score=178.97 Aligned_cols=145 Identities=23% Similarity=0.295 Sum_probs=110.5
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCC-CHHHHHHHHHHHHhc-CCeEEEEccchh
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLV-PRESVEKWLKYLREE-LPAVAFKCSTQE 216 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLv-p~e~~~~wl~~l~~~-~p~v~f~~~~~~ 216 (484)
..++.++|++|.|+|+.+|..... .+++++... ..++|+|+|+||+||+ +.+....|..++... ++.+.
T Consensus 75 q~iaaniD~vllV~d~~~p~~~~~-~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~------- 146 (298)
T PRK00098 75 KLIAANVDQAVLVFAAKEPDFSTD-LLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLE------- 146 (298)
T ss_pred cceeecCCEEEEEEECCCCCCCHH-HHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEE-------
Confidence 445789999999999999865433 344544321 2478999999999998 455667788887653 33333
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCC-
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG- 295 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg- 295 (484)
+|+.++.|.+.|++.|.. ..++++|.||||||||||+|.+.....++..++
T Consensus 147 ------------------vSA~~g~gi~~L~~~l~g----------k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~ 198 (298)
T PRK00098 147 ------------------LSAKEGEGLDELKPLLAG----------KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEA 198 (298)
T ss_pred ------------------EeCCCCccHHHHHhhccC----------ceEEEECCCCCCHHHHHHHHhCCcCCCCcceecc
Confidence 334566788888877742 468999999999999999999987777777765
Q ss_pred ------eeeeeEEEEeCCcEEEEecCCCccC
Q 011507 296 ------LTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 296 ------~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
||++.+.+.++...+|+||||+...
T Consensus 199 ~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~ 229 (298)
T PRK00098 199 LGRGKHTTTHVELYDLPGGGLLIDTPGFSSF 229 (298)
T ss_pred CCCCCcccccEEEEEcCCCcEEEECCCcCcc
Confidence 8998999888878899999999854
No 26
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.80 E-value=1.4e-18 Score=173.89 Aligned_cols=146 Identities=24% Similarity=0.245 Sum_probs=109.4
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEccchh
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCSTQE 216 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~~~~~ 216 (484)
.+-++.++|++|+|+|+++|.. ....+++++... ..++|+|+|+||+||++......|..++... ++.+.
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~------- 143 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLA------- 143 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEE-------
Confidence 3456889999999999999982 234566665421 2468999999999999876556677766543 34333
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCC---
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT--- 293 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~--- 293 (484)
+|+.++.|.+.|...|.+ ..++++|.+|||||||||+|.+.....++..
T Consensus 144 ------------------vSA~~g~gi~~L~~~L~~----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~ 195 (287)
T cd01854 144 ------------------VSAKTGEGLDELREYLKG----------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEK 195 (287)
T ss_pred ------------------EECCCCccHHHHHhhhcc----------ceEEEECCCCCCHHHHHHHHhchhhccccceecc
Confidence 344566788888877753 4699999999999999999998765544433
Q ss_pred ----CCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 294 ----PGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 294 ----pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
++||++.+.+.++...+|+||||+...
T Consensus 196 ~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~ 226 (287)
T cd01854 196 LGRGRHTTTHRELFPLPGGGLLIDTPGFREF 226 (287)
T ss_pred CCCCCcccceEEEEEcCCCCEEEECCCCCcc
Confidence 458999999998777799999999654
No 27
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.79 E-value=6.6e-20 Score=177.96 Aligned_cols=196 Identities=20% Similarity=0.281 Sum_probs=131.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC---------hHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE---------NDAS 328 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~---------~~~~ 328 (484)
+.+.|+|||.||||||||+|.+.|.++|.|+..+.|||+.....+ +.+++|+||||++.+...- ++..
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 579999999999999999999999999999999999999877554 4589999999999885431 2344
Q ss_pred HHHhccccccccCCCc------hh-HHHHHhhCC-cchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHH
Q 011507 329 IALRNCKRIEKLDDPV------GP-VKEILNRCP-ANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARII 400 (484)
Q Consensus 329 ~~L~~~~~i~~l~d~~------~~-v~~il~~~~-~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~ 400 (484)
-++.+++.+..+.|.. .+ +...|..+. -+.++++|+++....-..++.... .|..|..-+ .
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~----~Lt~g~l~~-------~ 219 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKD----LLTNGELAK-------L 219 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHH----hccccccch-------h
Confidence 5666666665555533 12 223333332 355667788877665444444333 222222110 0
Q ss_pred HHHHHcCCCCcccCCCCCCCCCchhhhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCcccccccccccc
Q 011507 401 LHDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCN 480 (484)
Q Consensus 401 l~d~~~gki~~~~~pp~~~~~~~~~~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~ 480 (484)
...|+. -|+.-|...-. ........|+.+|..|+..+.+++++.+.+ +...|.|||+||.|+.|++.
T Consensus 220 kl~v~~----~f~~~p~~~~~--------~~~~gwshfe~vF~vSaL~G~GikdlkqyL-msqa~~gpW~y~a~i~T~~s 286 (379)
T KOG1423|consen 220 KLEVQE----KFTDVPSDEKW--------RTICGWSHFERVFMVSALYGEGIKDLKQYL-MSQAPPGPWKYPADIVTEES 286 (379)
T ss_pred hhhHHH----HhccCCccccc--------ccccCcccceeEEEEecccccCHHHHHHHH-HhcCCCCCCCCCcccccccC
Confidence 111211 11222221111 111122357899999999999999999999 99999999999999999874
No 28
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.79 E-value=2.1e-18 Score=184.22 Aligned_cols=211 Identities=19% Similarity=0.198 Sum_probs=141.6
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f 210 (484)
....+..+....+..+|+||+|+|++++.+.....+.+.+.. .++|+|+|+||+|+...+. ....++...+.. +|
T Consensus 103 ~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~-~~ 177 (472)
T PRK03003 103 LQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGLGE-PH 177 (472)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCCCC-eE
Confidence 344566777888999999999999999987666667777654 4799999999999965321 111222212211 11
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc-----cccceEEEEecCCCCchhHHHHHhhcC
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE-----IKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~-----~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+|+..+.|.+.|++.|....+... ....++|+|||.||||||||+|+|++.
T Consensus 178 -----------------------~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~ 234 (472)
T PRK03003 178 -----------------------PVSALHGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE 234 (472)
T ss_pred -----------------------EEEcCCCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence 3556778899999988876664421 124689999999999999999999999
Q ss_pred ccceecCCCCeeeeeEEE--Ee-CCcEEEEecCCCccCCCC--ChHH------HHHHhccccccccCCCchhH-------
Q 011507 286 HVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSG--ENDA------SIALRNCKRIEKLDDPVGPV------- 347 (484)
Q Consensus 286 ~~~~v~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~~--~~~~------~~~L~~~~~i~~l~d~~~~v------- 347 (484)
..+.+++.||+|++.... .+ +..+.|+||||+...... ..+. ...+++++.+..+.|.....
T Consensus 235 ~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~ 314 (472)
T PRK03003 235 ERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRV 314 (472)
T ss_pred CcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHH
Confidence 877899999999986543 23 456889999998543111 1111 12456777666665543221
Q ss_pred HHHHhhCCcchhhhhcCCCCCC
Q 011507 348 KEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 348 ~~il~~~~~~~l~~~~ki~~~~ 369 (484)
...+.....+.+.+.||+|...
T Consensus 315 ~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 315 LSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred HHHHHHcCCCEEEEEECcccCC
Confidence 1112223456677788887643
No 29
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.78 E-value=1.4e-17 Score=186.07 Aligned_cols=211 Identities=21% Similarity=0.244 Sum_probs=143.4
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f 210 (484)
....|..+....++.+|+||+|+|+++.+......+.+.+.. .++|+|+|+||+|+....... ..++...+..+ |
T Consensus 340 ~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~~~--~~~~~lg~~~~-~ 414 (712)
T PRK09518 340 IDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDDQASEYDA--AEFWKLGLGEP-Y 414 (712)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECcccccchhhH--HHHHHcCCCCe-E
Confidence 455677888889999999999999999877666667777654 479999999999997543211 11222222211 1
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc-------cccceEEEEecCCCCchhHHHHHhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE-------IKKSITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~-------~~~~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
++|+.++.|++.|++.|.+..+... ....++|+++|.||||||||+|+|+
T Consensus 415 -----------------------~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~ 471 (712)
T PRK09518 415 -----------------------PISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLT 471 (712)
T ss_pred -----------------------EEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHh
Confidence 3456778899999888776654321 1235899999999999999999999
Q ss_pred cCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCC--hHH------HHHHhccccccccCCCchhH-----
Q 011507 284 RCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE--NDA------SIALRNCKRIEKLDDPVGPV----- 347 (484)
Q Consensus 284 ~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~--~~~------~~~L~~~~~i~~l~d~~~~v----- 347 (484)
+...+.+++.||||++..... . +..+.|+||||+....... .+. ..+++.++.+..+.|.....
T Consensus 472 ~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~ 551 (712)
T PRK09518 472 HEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDL 551 (712)
T ss_pred CccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHH
Confidence 998878899999999876532 2 4578899999986432211 111 22356666665555542211
Q ss_pred --HHHHhhCCcchhhhhcCCCCCC
Q 011507 348 --KEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 348 --~~il~~~~~~~l~~~~ki~~~~ 369 (484)
...+.....+.+.+.||+|...
T Consensus 552 ~i~~~~~~~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 552 KVMSMAVDAGRALVLVFNKWDLMD 575 (712)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCC
Confidence 1122234556778888887653
No 30
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.77 E-value=6.5e-19 Score=174.96 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=116.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE---eCCcEEEEecCCCccCCCCCh-----HHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ---LDKNVKLLDCPGVVMLKSGEN-----DASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~---l~~~i~liDTPGi~~~~~~~~-----~~~~~L~~~ 334 (484)
++|+|||.||||||||+|+|++.+++.|++.||||++..... .+.++.|+||||+..+..... .+...+.++
T Consensus 1 g~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a 80 (270)
T TIGR00436 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV 80 (270)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence 379999999999999999999999999999999999865432 245789999999987632111 122334555
Q ss_pred ccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccC
Q 011507 335 KRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTM 414 (484)
Q Consensus 335 ~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~ 414 (484)
+.+..+.|... ..+.++++ +..+.....|.+.+
T Consensus 81 Dvvl~VvD~~~----------------------~~~~~~~i-------------------------~~~l~~~~~p~ilV 113 (270)
T TIGR00436 81 DLILFVVDSDQ----------------------WNGDGEFV-------------------------LTKLQNLKRPVVLT 113 (270)
T ss_pred CEEEEEEECCC----------------------CCchHHHH-------------------------HHHHHhcCCCEEEE
Confidence 54444433211 11111111 11111234566677
Q ss_pred CCCCCCCCchh-hhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 415 PPARDQGIPSE-ARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 415 pp~~~~~~~~~-~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
.++.|...... ......+...+++..+++.|+....++..+...+ ..++|+||++||+|++||++.
T Consensus 114 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l-~~~l~~~~~~~~~~~~t~~~~ 180 (270)
T TIGR00436 114 RNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFI-EVHLPEGPFRYPEDYVTDQPD 180 (270)
T ss_pred EECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH-HHhCCCCCCCCCCcccCCCCH
Confidence 77777543222 2233444445556688999999999999999999 889999999999999999875
No 31
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.75 E-value=1.1e-18 Score=179.09 Aligned_cols=196 Identities=23% Similarity=0.332 Sum_probs=145.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE---eCCcEEEEecCCCccCCCCC------hHHHHHHhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ---LDKNVKLLDCPGVVMLKSGE------NDASIALRN 333 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~---l~~~i~liDTPGi~~~~~~~------~~~~~~L~~ 333 (484)
..|+|||+||||||||+|+|++++.+.|+++||+||+..+.. .+..+.++||+|+....... .++..++..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999988743 36679999999999754221 356678888
Q ss_pred cccccccCCCch-------hHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHc
Q 011507 334 CKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNE 406 (484)
Q Consensus 334 ~~~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~ 406 (484)
++.+.++.|.-. .+..+|.+..++.+++.||++.... ++....+. .|+.|....++++....+.++.+
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~-e~~~~efy----slG~g~~~~ISA~Hg~Gi~dLld 158 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA-EELAYEFY----SLGFGEPVPISAEHGRGIGDLLD 158 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh-hhhHHHHH----hcCCCCceEeehhhccCHHHHHH
Confidence 888887776433 3455677777899999999987632 22222121 36778999999999999999988
Q ss_pred CCCCcccCCCCCCCC----CchhhhhH--HHhhhccchhhhhcccccccccCCCcC-CCCCeeec
Q 011507 407 GKIPYYTMPPARDQG----IPSEARIV--SELGKEFNVNEVYKNESSFIGSLKSVD-DFQPVEVL 464 (484)
Q Consensus 407 gki~~~~~pp~~~~~----~~~~~~iv--~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~ 464 (484)
.-+..+. ++..... .....+++ ++.|++..++.|.+.++..+..+.+-- +++.+.+.
T Consensus 159 ~v~~~l~-~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e 222 (444)
T COG1160 159 AVLELLP-PDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE 222 (444)
T ss_pred HHHhhcC-CcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE
Confidence 8766654 3332211 12334444 889999999999999999888876543 44433333
No 32
>PRK15494 era GTPase Era; Provisional
Probab=99.72 E-value=6e-18 Score=173.22 Aligned_cols=174 Identities=21% Similarity=0.204 Sum_probs=115.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCCh-----HHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN-----DASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~-----~~~~~L~ 332 (484)
+.++|++||.||||||||+|+|.+.+.+.+++.|++|++..... . +.++.|+||||+..+...-. .+...+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 45799999999999999999999999999999999999865432 2 45899999999976532211 1122345
Q ss_pred ccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcc
Q 011507 333 NCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYY 412 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~ 412 (484)
+++.+..+.|.. ..+.+.+..+ +..+.....+.+
T Consensus 131 ~aDvil~VvD~~---------------------~s~~~~~~~i-------------------------l~~l~~~~~p~I 164 (339)
T PRK15494 131 SADLVLLIIDSL---------------------KSFDDITHNI-------------------------LDKLRSLNIVPI 164 (339)
T ss_pred hCCEEEEEEECC---------------------CCCCHHHHHH-------------------------HHHHHhcCCCEE
Confidence 555544333321 1122222111 111111123444
Q ss_pred cCCCCCCCCCchhhhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 413 TMPPARDQGIPSEARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 413 ~~pp~~~~~~~~~~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
.+.++.|.......++...+...+....+++.||....++..+.+.+ ..++|+|||+||+||+||++.
T Consensus 165 lViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L-~~~l~~~~~~~~~~~~td~~~ 232 (339)
T PRK15494 165 FLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYI-TSKAKISPWLYAEDDITDLPM 232 (339)
T ss_pred EEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHH-HHhCCCCCCCCCCCCCCCCCH
Confidence 45566664322112333333333344678999999999999999999 899999999999999999975
No 33
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=1.5e-17 Score=172.82 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=117.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--C-C-cEEEEecCCCccCCCCCh----HHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--D-K-NVKLLDCPGVVMLKSGEN----DASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--~-~-~i~liDTPGi~~~~~~~~----~~~~~L~~~ 334 (484)
..|+|||+||||||||||+|++.+. .|+++|+||+.++...+ + . .++|+||||++.+.+... .+...+..|
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 4699999999999999999999985 89999999999887554 3 3 599999999998754322 222334444
Q ss_pred ccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHc--CCCCcc
Q 011507 335 KRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNE--GKIPYY 412 (484)
Q Consensus 335 ~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~--gki~~~ 412 (484)
+.+.++.|... .+.....+++ ..+... +..+.. ...|.+
T Consensus 239 dvlL~VVD~s~-------------------~~~~d~~e~~-~~l~~e-------------------L~~~~~~L~~kP~I 279 (390)
T PRK12298 239 RVLLHLIDIAP-------------------IDGSDPVENA-RIIINE-------------------LEKYSPKLAEKPRW 279 (390)
T ss_pred CEEEEEeccCc-------------------ccccChHHHH-HHHHHH-------------------HHhhhhhhcCCCEE
Confidence 44444433210 0000011111 111000 000100 135777
Q ss_pred cCCCCCCCCCchh-hhhHHHhhhccchh-hhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 413 TMPPARDQGIPSE-ARIVSELGKEFNVN-EVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 413 ~~pp~~~~~~~~~-~~iv~~~~~~~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
.+.++.|.....+ .+.+..+.+.+.+. .++..|+....++..+...+ ..+++.+|++||+|++||++.
T Consensus 280 lVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I-~~~L~~~~~~~~~~~~td~~~ 349 (390)
T PRK12298 280 LVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDL-MTFIEENPREEAEEAEAPEKV 349 (390)
T ss_pred EEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHH-HHHhhhCcccCCcccccCccH
Confidence 7778888643322 23445555555543 68899999999999999999 889999999999999999875
No 34
>PRK00089 era GTPase Era; Reviewed
Probab=99.69 E-value=2.6e-17 Score=165.10 Aligned_cols=173 Identities=24% Similarity=0.255 Sum_probs=119.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--C-CcEEEEecCCCccCCCCCh-----HHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--D-KNVKLLDCPGVVMLKSGEN-----DASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--~-~~i~liDTPGi~~~~~~~~-----~~~~~L~ 332 (484)
+++.|+|+|.||||||||+|+|.+.+++.+++.|+||+....... + .++.|+||||+..+..... .+...+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999998665322 2 5899999999987642111 1122334
Q ss_pred ccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHH-HHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCc
Q 011507 333 NCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVD-DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPY 411 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~-e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~ 411 (484)
+++.+..+.|... .+...+ .++..+ .....|.
T Consensus 84 ~~D~il~vvd~~~---------------------~~~~~~~~i~~~l--------------------------~~~~~pv 116 (292)
T PRK00089 84 DVDLVLFVVDADE---------------------KIGPGDEFILEKL--------------------------KKVKTPV 116 (292)
T ss_pred cCCEEEEEEeCCC---------------------CCChhHHHHHHHH--------------------------hhcCCCE
Confidence 4444433333211 111111 111111 1123566
Q ss_pred ccCCCCCCCCCc-hh-hhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 412 YTMPPARDQGIP-SE-ARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 412 ~~~pp~~~~~~~-~~-~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
+.+.++.|.... .. ...+..+.+.+.+..+++.|+....++..+...+ ..++|+||++||.|++||++.
T Consensus 117 ilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L-~~~l~~~~~~y~~~~~td~~~ 187 (292)
T PRK00089 117 ILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVI-AKYLPEGPPYYPEDQITDRPE 187 (292)
T ss_pred EEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHH-HHhCCCCCCCCCCCCCCCCCH
Confidence 666677775422 22 3455666666677788999999999999999998 889999999999999999875
No 35
>PRK01889 GTPase RsgA; Reviewed
Probab=99.62 E-value=3.6e-15 Score=153.59 Aligned_cols=143 Identities=25% Similarity=0.306 Sum_probs=99.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
++.++|.|+.|+++..++. ...+++++..+ ..+.+.|+||||+||++.. ....|+..+...++.+.+
T Consensus 109 iaANvD~vliV~s~~p~~~--~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~v--------- 177 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFN--LRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAV--------- 177 (356)
T ss_pred EEEeCCEEEEEEecCCCCC--hhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEE---------
Confidence 3688999999999964443 33677776542 2356779999999999752 233444444223444433
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCC------
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT------ 293 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~------ 293 (484)
|+..+.|.+.|...|.. .-+++++|.||||||||+|+|.+.....+|..
T Consensus 178 ----------------Sa~~g~gl~~L~~~L~~---------g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~ 232 (356)
T PRK01889 178 ----------------SALDGEGLDVLAAWLSG---------GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSK 232 (356)
T ss_pred ----------------ECCCCccHHHHHHHhhc---------CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCC
Confidence 33456678888877742 34799999999999999999998765444433
Q ss_pred -CCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 294 -PGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 294 -pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
.++|+..+.+.+..+..++||||+...
T Consensus 233 g~~tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 233 GRHTTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred CcchhhhccEEEecCCCeecCCCchhhh
Confidence 246777777778777889999999554
No 36
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=142.93 Aligned_cols=174 Identities=25% Similarity=0.300 Sum_probs=117.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHH--HHHHHHHhc-CCeEEEEccchhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVE--KWLKYLREE-LPAVAFKCSTQEQ 217 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~--~wl~~l~~~-~p~v~f~~~~~~~ 217 (484)
.+.++|-++.|+-+-+|-.+ ...+++++..+ ..+-..|+||||+||++.+... +++..++.. |+++..
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~------- 147 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV------- 147 (301)
T ss_pred cccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe-------
Confidence 34447888888888888654 34577776543 2456668899999999877655 566666654 343332
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceec------
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVG------ 291 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~------ 291 (484)
++.+..|.+.|...|.. -...++|.++||||||||+|.+.-...|+
T Consensus 148 ------------------s~~~~~~~~~l~~~l~~----------~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~ 199 (301)
T COG1162 148 ------------------SAKNGDGLEELAELLAG----------KITVLLGQSGVGKSTLINALLPELNQKTGEISEKL 199 (301)
T ss_pred ------------------cCcCcccHHHHHHHhcC----------CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccC
Confidence 23455677777777754 36789999999999999999975433333
Q ss_pred -CCCCeeeeeEEEEeCCcEEEEecCCCccCCCC--C--------hHHHHHHhccc--cccccCCCchhHHHHH
Q 011507 292 -ATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSG--E--------NDASIALRNCK--RIEKLDDPVGPVKEIL 351 (484)
Q Consensus 292 -~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~--~--------~~~~~~L~~~~--~i~~l~d~~~~v~~il 351 (484)
..-+||++...+.++.+-+|+|||||-..... + .++...+..|. ...|..+|..++...+
T Consensus 200 ~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av 272 (301)
T COG1162 200 GRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAV 272 (301)
T ss_pred CCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHH
Confidence 23468999999999888899999999766441 1 12233333442 2235667777665544
No 37
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.59 E-value=2.8e-15 Score=156.09 Aligned_cols=210 Identities=19% Similarity=0.110 Sum_probs=118.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-------------------------CCcEEEEecC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-------------------------DKNVKLLDCP 315 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-------------------------~~~i~liDTP 315 (484)
++||+||+||||||||+|+|++... .++++||+|..+.... + ...+.|+|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 6899999999999999999999875 6799999998766521 0 1247899999
Q ss_pred CCccCCCCC----hHHHHHHhccccccccCCCc---------------hhHHHH------Hhh-----CCcchhhhhcCC
Q 011507 316 GVVMLKSGE----NDASIALRNCKRIEKLDDPV---------------GPVKEI------LNR-----CPANLLISLYKL 365 (484)
Q Consensus 316 Gi~~~~~~~----~~~~~~L~~~~~i~~l~d~~---------------~~v~~i------l~~-----~~~~~l~~~~ki 365 (484)
|++...+.. ..+...+++|+.+.++.|.. .|+.++ |.. +.+..-....+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~ 160 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKA 160 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 998764332 23445688888887665543 233322 100 000000000000
Q ss_pred CCC-CCH---------------HHHHHHHHHHhCccccCCcccHHHHHHHHHHHH-HcCCCCcccCCCCCCCCCchh-hh
Q 011507 366 PSF-DSV---------------DDFLQKVATVRGKLKKGGIVDVEAAARIILHDW-NEGKIPYYTMPPARDQGIPSE-AR 427 (484)
Q Consensus 366 ~~~-~~~---------------~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~-~~gki~~~~~pp~~~~~~~~~-~~ 427 (484)
..- ... ..+...+ ...|........+ ......+..+ ..-..|.+.+.++.|...... ..
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~~e~~v~~~L-~~~g~~~~~~~~~--~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~ 237 (396)
T PRK09602 161 QAEKFDIEEALAEQLSGLGINEEHVKEAL-RELGLPEDPSKWT--DEDLLELARELRKISKPMVIAANKADLPPAEENIE 237 (396)
T ss_pred hcCCcchHHHHHHHHhhhccCHHHHHHHH-HHcCCcCcccCCC--HHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHH
Confidence 000 000 0011100 0111111111111 1111111111 122346666667766432111 12
Q ss_pred hHHHhhhccchhhhhcccccccccCCC-cCCCCCeeecCCCCccccccccccccc
Q 011507 428 IVSELGKEFNVNEVYKNESSFIGSLKS-VDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 428 iv~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
-+.++ .+..+++.|+....++.. +...+ +.++|.||++||+|++||++.
T Consensus 238 ~i~~~----~~~~vvpISA~~e~~l~~~l~~~i-~~~lp~~p~~~~~d~ltd~~~ 287 (396)
T PRK09602 238 RLKEE----KYYIVVPTSAEAELALRRAAKAGL-IDYIPGDSDFEILGELSEKQK 287 (396)
T ss_pred HHHhc----CCCcEEEEcchhhhhHHHHHHHhH-HhhCCCCCccCccccCCHHHH
Confidence 22222 456789999999999988 67777 999999999999999999874
No 38
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.53 E-value=8e-15 Score=133.16 Aligned_cols=103 Identities=30% Similarity=0.420 Sum_probs=66.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChHHH---HHH--hcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDAS---IAL--RNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~~~---~~L--~~~ 334 (484)
++|+++|.||||||||||+|+|.+ ..|++.||+|.+.....+ +..+.|+|+||+....+...+.. ..+ ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 579999999999999999999999 689999999999877543 56899999999987654432221 122 345
Q ss_pred ccccccCCCchhHHH-----HHhhCCcchhhhhcCCC
Q 011507 335 KRIEKLDDPVGPVKE-----ILNRCPANLLISLYKLP 366 (484)
Q Consensus 335 ~~i~~l~d~~~~v~~-----il~~~~~~~l~~~~ki~ 366 (484)
+.+..+.|....-.. -+...+.+.+..+|++|
T Consensus 80 D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 555556665432211 12334455666666654
No 39
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=3.6e-14 Score=132.02 Aligned_cols=110 Identities=25% Similarity=0.325 Sum_probs=79.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChH-------HHHH--
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND-------ASIA-- 330 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~-------~~~~-- 330 (484)
...-|+++|++|||||||||+|++.+ .+.||.+||.|+.+..+.++..+.|+|.||+.+...+... ....
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 45689999999999999999999966 7999999999999999999999999999999988644211 1111
Q ss_pred ----HhccccccccCCCch----hHHHHHhhCCcchhhhhcCCCCCCC
Q 011507 331 ----LRNCKRIEKLDDPVG----PVKEILNRCPANLLISLYKLPSFDS 370 (484)
Q Consensus 331 ----L~~~~~i~~l~d~~~----~v~~il~~~~~~~l~~~~ki~~~~~ 370 (484)
|..+..+.....+.. .+.+.+.....+.+.+++++|.+..
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~ 150 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKK 150 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCCh
Confidence 222222222222211 2344566677777888888887764
No 40
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.44 E-value=1.7e-13 Score=141.44 Aligned_cols=112 Identities=26% Similarity=0.335 Sum_probs=85.2
Q ss_pred ccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHH
Q 011507 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASI 329 (484)
Q Consensus 258 ~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~-----~~~~~ 329 (484)
.+..+++|+++|.||||||||+|+|.+...+.|++.|||||+..+..+ +-.+.|+||-||-.....- ..+..
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999987654 4579999999998553221 23456
Q ss_pred HHhccccccccCCCchhH----HHHHh--hCCcchhhhhcCCCCCC
Q 011507 330 ALRNCKRIEKLDDPVGPV----KEILN--RCPANLLISLYKLPSFD 369 (484)
Q Consensus 330 ~L~~~~~i~~l~d~~~~v----~~il~--~~~~~~l~~~~ki~~~~ 369 (484)
.+..++.+.++.|...+. ..++. ...++.+.++||.|...
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~ 338 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVS 338 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhccc
Confidence 788888888887765531 12333 33456778888877543
No 41
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.42 E-value=8.5e-13 Score=130.51 Aligned_cols=107 Identities=29% Similarity=0.388 Sum_probs=79.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCC-----ChHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSG-----ENDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~-----~~~~~~~L~ 332 (484)
...+|.|.|+||||||||+++|++.+. .|+++|+||+.++.++.+ ..++++|||||.+-... +..+.++|+
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 468999999999999999999999996 799999999999988763 47999999999976433 234566776
Q ss_pred cccc-ccccCCCchh----HH-------HHHhhCCcchhhhhcCCCCC
Q 011507 333 NCKR-IEKLDDPVGP----VK-------EILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 333 ~~~~-i~~l~d~~~~----v~-------~il~~~~~~~l~~~~ki~~~ 368 (484)
+... +.++.||... +. .+-.....+.+.++||+|..
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~ 293 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIA 293 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 6544 3566776442 22 22233445677778888743
No 42
>PTZ00258 GTP-binding protein; Provisional
Probab=99.36 E-value=2.5e-12 Score=132.94 Aligned_cols=82 Identities=26% Similarity=0.347 Sum_probs=65.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--------------------CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--------------------DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--------------------~~~i~liDTPGi~~~ 320 (484)
..++|||||+||||||||+|+|++.++ .++++||||+.+....+ +.++.|+||||++..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 467899999999999999999999885 89999999998776432 235999999999976
Q ss_pred CCCC----hHHHHHHhccccccccCCC
Q 011507 321 KSGE----NDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 321 ~~~~----~~~~~~L~~~~~i~~l~d~ 343 (484)
.+.. ..+...+++|+.+.++.|.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 5432 2455677888888766653
No 43
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.36 E-value=6.5e-13 Score=114.54 Aligned_cols=59 Identities=42% Similarity=0.582 Sum_probs=50.7
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--Ee-CCcEEEEecCCCccCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~ 322 (484)
+|+|+|.||||||||||+|++.+.+.++..||+|+..... .+ +..+.|+||||+..+..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~ 62 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGES 62 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccch
Confidence 5899999999999999999998888999999999998543 34 44678999999987743
No 44
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.33 E-value=2.8e-12 Score=127.12 Aligned_cols=77 Identities=26% Similarity=0.386 Sum_probs=60.9
Q ss_pred EEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--eC-C-----------------cEEEEecCCCccCCCCC
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD-K-----------------NVKLLDCPGVVMLKSGE 324 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l~-~-----------------~i~liDTPGi~~~~~~~ 324 (484)
||+||+||||||||+|+|++.++ .++++||||+++.... +. . .+.|+||||++...+..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 68999999999999999999997 8999999998877532 22 1 48999999999765433
Q ss_pred h----HHHHHHhccccccccCC
Q 011507 325 N----DASIALRNCKRIEKLDD 342 (484)
Q Consensus 325 ~----~~~~~L~~~~~i~~l~d 342 (484)
. .+...++.|+.+.++.|
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~ 101 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVR 101 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEe
Confidence 2 35556788888876654
No 45
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.33 E-value=3.6e-12 Score=130.37 Aligned_cols=81 Identities=27% Similarity=0.377 Sum_probs=63.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--EeC------------------CcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QLD------------------KNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l~------------------~~i~liDTPGi~~~~ 321 (484)
+++||+||+||||||||+|+|++.+ +.++++||||+++... .++ .++.|+||||++...
T Consensus 2 ~~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 3789999999999999999999999 6899999999987642 222 258999999999764
Q ss_pred CCC----hHHHHHHhccccccccCCC
Q 011507 322 SGE----NDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 322 ~~~----~~~~~~L~~~~~i~~l~d~ 343 (484)
+.. ..+...++.|+.+.++.|.
T Consensus 81 ~~g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 81 SKGEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred ChHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 432 2455667888888776553
No 46
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.28 E-value=3.4e-12 Score=129.30 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=58.8
Q ss_pred EEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--Ee---------------------C----CcEEEEecCCC
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL---------------------D----KNVKLLDCPGV 317 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l---------------------~----~~i~liDTPGi 317 (484)
||+||.||||||||+|+|++... .++++|++|..+... .+ + -.+.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 68999999999999999999885 899999999876542 11 1 25889999999
Q ss_pred ccCCCCCh----HHHHHHhccccccccCCC
Q 011507 318 VMLKSGEN----DASIALRNCKRIEKLDDP 343 (484)
Q Consensus 318 ~~~~~~~~----~~~~~L~~~~~i~~l~d~ 343 (484)
+....... .+...+++|+.+.++.|.
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeC
Confidence 86643322 344468888888766554
No 47
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.27 E-value=3.8e-12 Score=120.32 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=49.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecC-CCCeeeeeEEEE---eCCcEEEEecCCCccCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGA-TPGLTRSMQEVQ---LDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~-~pg~Tr~~~~~~---l~~~i~liDTPGi~~~~~ 322 (484)
++|++||.||||||||+|+|+|...+.++. .+|+|+..+... -+..+.|+||||+.....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~ 64 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSV 64 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccC
Confidence 479999999999999999999998766654 568999877653 256799999999998743
No 48
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=9.1e-12 Score=128.56 Aligned_cols=85 Identities=31% Similarity=0.449 Sum_probs=67.7
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC------hHHHH
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE------NDASI 329 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~------~~~~~ 329 (484)
+..++.|+|+|.||||||||+|+|.+...+.|++.|||||+..+..+ +..+.|+||-||-...... ..+..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHH
Confidence 44679999999999999999999999999999999999999887665 4579999999998832221 22344
Q ss_pred HHhccccccccCCC
Q 011507 330 ALRNCKRIEKLDDP 343 (484)
Q Consensus 330 ~L~~~~~i~~l~d~ 343 (484)
.+..++.+..+.|+
T Consensus 345 ~~~~advi~~vvda 358 (531)
T KOG1191|consen 345 RIERADVILLVVDA 358 (531)
T ss_pred HHhhcCEEEEEecc
Confidence 56666766666666
No 49
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.25 E-value=1e-11 Score=123.38 Aligned_cols=111 Identities=20% Similarity=0.288 Sum_probs=80.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe--CCcEEEEecCCCccCCCCC----hHHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL--DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l--~~~i~liDTPGi~~~~~~~----~~~~~~L~~~ 334 (484)
--||+||+||+|||||||++...+. .++++|+||..+.. +.+ ...+++-|.|||+...+.. ..+...+..|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3499999999999999999999985 89999999999775 333 4569999999999987653 4566667667
Q ss_pred ccccccCCC-----chhHHHH------Hh-----hCCcchhhhhcCCCCCCCHHHH
Q 011507 335 KRIEKLDDP-----VGPVKEI------LN-----RCPANLLISLYKLPSFDSVDDF 374 (484)
Q Consensus 335 ~~i~~l~d~-----~~~v~~i------l~-----~~~~~~l~~~~ki~~~~~~~e~ 374 (484)
..+.++.|. ..|+.++ |+ ...++.+.++|++|...+.+++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~ 294 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEEL 294 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHH
Confidence 666666542 2233322 22 2346778889999855444433
No 50
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.24 E-value=1.7e-11 Score=111.65 Aligned_cols=94 Identities=29% Similarity=0.294 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCc
Q 011507 195 EKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVG 274 (484)
Q Consensus 195 ~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvG 274 (484)
+.|++.|++....+.+ +|+.+..|.+.|.+.|++ -+++++|.++||
T Consensus 2 ~~~~~~y~~~gy~v~~------------------------~S~~~~~g~~~l~~~l~~----------k~~vl~G~SGvG 47 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFF------------------------ISAKTGEGIEELKELLKG----------KTSVLLGQSGVG 47 (161)
T ss_dssp HHHHHHHHHTTSEEEE-------------------------BTTTTTTHHHHHHHHTT----------SEEEEECSTTSS
T ss_pred HHHHHHHHHcCCcEEE------------------------EeCCCCcCHHHHHHHhcC----------CEEEEECCCCCC
Confidence 5688888876433332 233466788888888764 478999999999
Q ss_pred hhHHHHHhhcCcccee-------cCCCCeeeeeEEEEeCCcEEEEecCCCccCCC
Q 011507 275 KSSLINSLKRCHVANV-------GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 275 KSSLIN~L~~~~~~~v-------~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~ 322 (484)
||||||+|.+.....+ +..-+||++.+.+.++.+..|+||||+-....
T Consensus 48 KSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 48 KSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp HHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT--G
T ss_pred HHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcccc
Confidence 9999999998754333 23346888999999989999999999976643
No 51
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.21 E-value=4.6e-11 Score=125.30 Aligned_cols=116 Identities=19% Similarity=0.273 Sum_probs=77.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCC----hHHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~----~~~~~~L~~~ 334 (484)
..|++||+||||||||||+|++.+. .++++|+||..+....+ +..+.|+||||++...+.. ..+...+..|
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 4799999999999999999999885 68899999999876543 4579999999998754332 2233345557
Q ss_pred ccccccCCCc-----hhHH---HH---Hhh-----CCcchhhhhcCCCCCCCHHHHHHHHHH
Q 011507 335 KRIEKLDDPV-----GPVK---EI---LNR-----CPANLLISLYKLPSFDSVDDFLQKVAT 380 (484)
Q Consensus 335 ~~i~~l~d~~-----~~v~---~i---l~~-----~~~~~l~~~~ki~~~~~~~e~l~~la~ 380 (484)
+.+.++.|.. .+.. .+ |.. ..++.+.+.||+|. ....+.+..++.
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL-~~~~e~l~~l~~ 298 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL-PEAEENLEEFKE 298 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC-cCCHHHHHHHHH
Confidence 7666665542 2222 11 222 23567778899884 333333344443
No 52
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.20 E-value=1.3e-11 Score=121.77 Aligned_cols=84 Identities=30% Similarity=0.366 Sum_probs=69.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHHhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRN 333 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~----~~~~~~L~~ 333 (484)
+..+|++||+||||||||+|.|++.+. .++++|+||......-+ +-+|+|+|+|||+...+.+ .++..+.|+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 458999999999999999999999984 79999999998765433 6689999999999886543 346667899
Q ss_pred cccccccCCCch
Q 011507 334 CKRIEKLDDPVG 345 (484)
Q Consensus 334 ~~~i~~l~d~~~ 345 (484)
|+.+..+.|...
T Consensus 141 ADlIiiVld~~~ 152 (365)
T COG1163 141 ADLIIIVLDVFE 152 (365)
T ss_pred CCEEEEEEecCC
Confidence 999877776653
No 53
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.19 E-value=7e-11 Score=120.75 Aligned_cols=107 Identities=24% Similarity=0.308 Sum_probs=73.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-C-CcEEEEecCCCccCCCCC----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-D-KNVKLLDCPGVVMLKSGE----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~-~~i~liDTPGi~~~~~~~----~~~~~~L~ 332 (484)
.--.|+|||+||||||||||+|++.+. .++++|+||+.++... + + ..+.|+||||++...+.. ..+...+.
T Consensus 157 ~~adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 157 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred ccCCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 345699999999999999999999875 6899999999988644 3 2 469999999998765432 22334455
Q ss_pred ccccccccCCCch-----hHHHH---Hhh-----CCcchhhhhcCCCCC
Q 011507 333 NCKRIEKLDDPVG-----PVKEI---LNR-----CPANLLISLYKLPSF 368 (484)
Q Consensus 333 ~~~~i~~l~d~~~-----~v~~i---l~~-----~~~~~l~~~~ki~~~ 368 (484)
.|+.+.++.|... .+..+ |.. ..++.+.+.||+|..
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 6666666655432 11111 222 134566777887754
No 54
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.18 E-value=2.2e-11 Score=128.66 Aligned_cols=106 Identities=27% Similarity=0.368 Sum_probs=79.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHHhccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNCK 335 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~-----~~~~~~~L~~~~ 335 (484)
+|+|||.||||||||+|+|.+.+.+.+++.||+|++.+...+ +..+.|+||||+...... ......++..++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999998899999999998776542 557999999998643211 122345677777
Q ss_pred cccccCCCch-------hHHHHHhhCCcchhhhhcCCCCCC
Q 011507 336 RIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 336 ~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
.+..+.|... .+..++++...+.+.+.|+++...
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~ 121 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKK 121 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCc
Confidence 7777766532 233456666778888889998654
No 55
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.18 E-value=3.5e-11 Score=127.89 Aligned_cols=83 Identities=27% Similarity=0.353 Sum_probs=64.0
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHHh
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALR 332 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~----~~~~~~L~ 332 (484)
+.-..|+|||+||||||||||+|++.+. .++++||||+.+....+ +..+.|+||||++...+.. ..+...+.
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhie 235 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIE 235 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHH
Confidence 4457799999999999999999999875 57999999998876543 3479999999998654332 23344566
Q ss_pred ccccccccCCC
Q 011507 333 NCKRIEKLDDP 343 (484)
Q Consensus 333 ~~~~i~~l~d~ 343 (484)
.|+.+.+|.|.
T Consensus 236 radvLv~VVD~ 246 (500)
T PRK12296 236 RCAVLVHVVDC 246 (500)
T ss_pred hcCEEEEEECC
Confidence 77777777665
No 56
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.16 E-value=4.8e-11 Score=117.32 Aligned_cols=121 Identities=24% Similarity=0.313 Sum_probs=84.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--eC--CcEEEEecCCCccCCCCC----hHHHHHH
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD--KNVKLLDCPGVVMLKSGE----NDASIAL 331 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l~--~~i~liDTPGi~~~~~~~----~~~~~~L 331 (484)
+.--.||+||+||+|||||+|+|.+.+. .|+++++||-.+.... .+ .++.+.|.|||+...+.+ -.+...+
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHi 272 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHI 272 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHH
Confidence 4456799999999999999999999997 8999999999877543 33 358999999999987654 3456667
Q ss_pred hccccccccCCCchh--------HHHH---Hh-----hCCcchhhhhcCCCCCCCHHHHHHHHHHH
Q 011507 332 RNCKRIEKLDDPVGP--------VKEI---LN-----RCPANLLISLYKLPSFDSVDDFLQKVATV 381 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~--------v~~i---l~-----~~~~~~l~~~~ki~~~~~~~e~l~~la~~ 381 (484)
..|..+.+|.|.... +..+ |+ ...++.+.+.|++|..+....+|..++++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~ 338 (366)
T KOG1489|consen 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKR 338 (366)
T ss_pred HhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHH
Confidence 677766666654322 1111 11 12345666777776555555666666554
No 57
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.15 E-value=8.7e-11 Score=120.91 Aligned_cols=107 Identities=21% Similarity=0.233 Sum_probs=72.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe--CCcEEEEecCCCccCCCCC--hHH---HHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL--DKNVKLLDCPGVVMLKSGE--NDA---SIAL 331 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l--~~~i~liDTPGi~~~~~~~--~~~---~~~L 331 (484)
..++|++||+||||||||+|+|++.. +.+.+.||+|++... +.+ +..+.|+||||++...+.+ ..+ ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999988 578899999988765 334 3478999999996432211 111 2235
Q ss_pred hccccccccCCCchhH--------HHHHhhC---CcchhhhhcCCCCC
Q 011507 332 RNCKRIEKLDDPVGPV--------KEILNRC---PANLLISLYKLPSF 368 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~v--------~~il~~~---~~~~l~~~~ki~~~ 368 (484)
.+++.+.++.|...+. ..++..+ ..+.+.+.||+|..
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 6777777666543221 1344443 34567777888754
No 58
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.13 E-value=1.1e-10 Score=124.03 Aligned_cols=111 Identities=27% Similarity=0.356 Sum_probs=76.6
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCCh-----HHHHH
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN-----DASIA 330 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~-----~~~~~ 330 (484)
....++|+++|+||||||||+|+|++...+.+++.||+|++..... + +..+.|+||||+..+...-. .....
T Consensus 212 ~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 212 LREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3456899999999999999999999998888999999999876533 3 34789999999865422111 12234
Q ss_pred HhccccccccCCCchhH----HHHHhh-CCcchhhhhcCCCCCC
Q 011507 331 LRNCKRIEKLDDPVGPV----KEILNR-CPANLLISLYKLPSFD 369 (484)
Q Consensus 331 L~~~~~i~~l~d~~~~v----~~il~~-~~~~~l~~~~ki~~~~ 369 (484)
+.+++.+..+.|...+. ..++.. ...+.+.+.||+|...
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTG 335 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccc
Confidence 66777777666653321 122222 2346677888887543
No 59
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6e-11 Score=119.93 Aligned_cols=80 Identities=30% Similarity=0.400 Sum_probs=65.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-------------------CCcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-------------------DKNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-------------------~~~i~liDTPGi~~~ 320 (484)
.+++||||.||||||||+|+|+... +.++++|+||-++.... + ...+.|+|..|++..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 5789999999999999999999998 78999999999866421 1 124789999999998
Q ss_pred CCCC----hHHHHHHhccccccccCC
Q 011507 321 KSGE----NDASIALRNCKRIEKLDD 342 (484)
Q Consensus 321 ~~~~----~~~~~~L~~~~~i~~l~d 342 (484)
.+.+ ..+...||.++.+.++.+
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEE
Confidence 6653 667788999998876653
No 60
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.12 E-value=4.8e-10 Score=110.00 Aligned_cols=62 Identities=32% Similarity=0.366 Sum_probs=53.7
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
...+++|+|+|.+|||||||+|+|.+...+.+++.+++|+..+.+.. +..+.|+||||+...
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 34679999999999999999999999998889999888888776543 457899999999866
No 61
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.12 E-value=2.1e-10 Score=117.03 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=61.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--eC--CcEEEEecCCCccCCCCC----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD--KNVKLLDCPGVVMLKSGE----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l~--~~i~liDTPGi~~~~~~~----~~~~~~L~ 332 (484)
.-..|+|||+||||||||||+|++.+. .++++|+||+.++... ++ ..+.|+||||++...+.. ..+...+.
T Consensus 156 ~~adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 156 LLADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 345799999999999999999999875 6899999999877644 33 579999999998664332 22334455
Q ss_pred ccccccccCCCc
Q 011507 333 NCKRIEKLDDPV 344 (484)
Q Consensus 333 ~~~~i~~l~d~~ 344 (484)
.|+.+.++.|..
T Consensus 235 rad~ll~VvD~s 246 (329)
T TIGR02729 235 RTRVLLHLIDIS 246 (329)
T ss_pred hhCEEEEEEcCc
Confidence 566666665543
No 62
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.11 E-value=1.7e-10 Score=122.21 Aligned_cols=123 Identities=25% Similarity=0.347 Sum_probs=81.1
Q ss_pred HHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCC
Q 011507 246 LIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 246 Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~ 322 (484)
|.+++..+ ........++|+++|.||||||||+|+|++...+.|++.||||++..... + +..+.++||||+.....
T Consensus 188 l~~ll~~~-~~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~ 266 (442)
T TIGR00450 188 LKDILNSY-KLEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHAD 266 (442)
T ss_pred HHHHHHHH-HHHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchh
Confidence 33444444 22334567999999999999999999999988788999999999876543 3 34689999999965421
Q ss_pred CCh-----HHHHHHhccccccccCCCchhH---HHHHhh---CCcchhhhhcCCCCCC
Q 011507 323 GEN-----DASIALRNCKRIEKLDDPVGPV---KEILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 323 ~~~-----~~~~~L~~~~~i~~l~d~~~~v---~~il~~---~~~~~l~~~~ki~~~~ 369 (484)
.-. .....+.+++.+..+.|...+. ..++.. ...+.+.+.||+|...
T Consensus 267 ~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 267 FVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCC
Confidence 111 1224566777776665532211 112222 2446677889988643
No 63
>PRK04213 GTP-binding protein; Provisional
Probab=99.10 E-value=4.4e-10 Score=106.14 Aligned_cols=56 Identities=32% Similarity=0.501 Sum_probs=48.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~ 319 (484)
..+|+++|.+|||||||+|+|.+.. ..++..||+|+....+..+ ++.++||||+..
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~ 64 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGF 64 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCcccc
Confidence 5789999999999999999999987 4688899999987776655 799999999754
No 64
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=3.7e-10 Score=120.93 Aligned_cols=109 Identities=26% Similarity=0.340 Sum_probs=79.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~-----~~~~~~L~ 332 (484)
...+|+|||.||||||||+|+|++.+.+.+++.||+|++...... +..+.|+||||+......- ..+..++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 346899999999999999999999988889999999998776542 4578999999986321110 12334677
Q ss_pred ccccccccCCCch-------hHHHHHhhCCcchhhhhcCCCCCC
Q 011507 333 NCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 333 ~~~~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
.++.+..+.|... .+...+.....+.+.+.||+|...
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 8888777766432 233445556677888889998643
No 65
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.07 E-value=3.3e-10 Score=105.28 Aligned_cols=61 Identities=34% Similarity=0.511 Sum_probs=53.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
...+|+|+|.+|||||||+|+|.+.. +..+++.+|+|++...+..+.++.|+||||+....
T Consensus 17 ~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~ 78 (179)
T TIGR03598 17 DGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAK 78 (179)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCcccc
Confidence 46799999999999999999999985 67789999999998877777789999999987653
No 66
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.07 E-value=2.9e-10 Score=120.45 Aligned_cols=106 Identities=27% Similarity=0.376 Sum_probs=78.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCC-----ChHHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG-----ENDASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~-----~~~~~~~L~~~ 334 (484)
.+|+|||.||||||||+|+|.+.+.+.+++.||+|++..... + +..+.|+||||+...... ......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999999888999999999876543 2 457999999999863211 01233456778
Q ss_pred ccccccCCCch-------hHHHHHhhCCcchhhhhcCCCCC
Q 011507 335 KRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 335 ~~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~ 368 (484)
+.+..+.|... .+...+.....+.+.+.|++|..
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~ 122 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGP 122 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCc
Confidence 77776665432 22345666677888888999854
No 67
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.07 E-value=5.1e-10 Score=125.52 Aligned_cols=174 Identities=21% Similarity=0.254 Sum_probs=107.0
Q ss_pred EEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccc
Q 011507 181 LLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIK 260 (484)
Q Consensus 181 lVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~ 260 (484)
++++=.+|-..+.+...+.++...++...+...+-.. .+-+.... ...-+.++-+..|... | ...
T Consensus 209 ~~idts~~~~~~v~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~a~~~~~~~~-------~----~~~ 273 (712)
T PRK09518 209 TTLDNSDLDFDETLDLLIGLVEDAIEEQEYDQYAANL-EGYELDEG---DEDLLEGSGFVAGDEK-------A----GPK 273 (712)
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhhhhhHHHHhhcC-ccCCcCch---hHHHhhCCCcccCccc-------c----ccc
Confidence 6788888888888888888887776654432100000 00000000 0000011111111100 0 011
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~-----~~~~~~~L~ 332 (484)
...+|+|||.||||||||+|+|++.+.+.+++.||+|++...... +..+.|+||||+...... ...+...+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 246799999999999999999999988899999999999876543 457899999998743211 122344577
Q ss_pred ccccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCCC
Q 011507 333 NCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 333 ~~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
.++.+..+.|... + +...|.....+.+.+.||++...
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 8888877766422 2 23345566778888899998654
No 68
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.06 E-value=4.9e-10 Score=111.14 Aligned_cols=80 Identities=26% Similarity=0.404 Sum_probs=65.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--------------------CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--------------------DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--------------------~~~i~liDTPGi~~~ 320 (484)
+.+++||||+|||||||++|+|++..+. ++++|++|-++....+ +..+.++|.-|++..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 4578999999999999999999999975 9999999998765331 235899999999988
Q ss_pred CCCC----hHHHHHHhccccccccC
Q 011507 321 KSGE----NDASIALRNCKRIEKLD 341 (484)
Q Consensus 321 ~~~~----~~~~~~L~~~~~i~~l~ 341 (484)
.+.+ ..+...+|+|+.+.++.
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVV 122 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVV 122 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEE
Confidence 6653 45667788888876554
No 69
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.04 E-value=4.4e-10 Score=112.47 Aligned_cols=76 Identities=28% Similarity=0.336 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE---eCCcEEEEecCCCcc
Q 011507 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ---LDKNVKLLDCPGVVM 319 (484)
Q Consensus 243 ~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~---l~~~i~liDTPGi~~ 319 (484)
.+.|+++|..+-... ...++|+|+|.+||||||++|+|++.+++.+++.+++|.....+. -+..+.++||||+..
T Consensus 21 q~~l~~~l~~l~~~~--~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d 98 (313)
T TIGR00991 21 QTKLLELLGKLKEED--VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIE 98 (313)
T ss_pred HHHHHHHHHhccccc--ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCc
Confidence 367888887765443 357899999999999999999999999888888887765544332 245799999999987
Q ss_pred C
Q 011507 320 L 320 (484)
Q Consensus 320 ~ 320 (484)
.
T Consensus 99 ~ 99 (313)
T TIGR00991 99 G 99 (313)
T ss_pred h
Confidence 5
No 70
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=99.04 E-value=6.6e-10 Score=113.90 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=64.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--Ee-C-----------------CcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-D-----------------KNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l-~-----------------~~i~liDTPGi~~~~ 321 (484)
++++||||+||||||||+|+|++..+..++++|+||..+... .+ | ..+.++|.||++...
T Consensus 2 ~lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 2 GLSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred CceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 378999999999999999999999976899999999886652 22 2 258999999999875
Q ss_pred CC----ChHHHHHHhccccccccCC
Q 011507 322 SG----ENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 322 ~~----~~~~~~~L~~~~~i~~l~d 342 (484)
+. +..+...+++|+.+.++.+
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr 106 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVR 106 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEe
Confidence 43 2466778899988866654
No 71
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.01 E-value=8.2e-10 Score=118.93 Aligned_cols=104 Identities=26% Similarity=0.400 Sum_probs=71.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC--ChHHH-H-HH-hc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG--ENDAS-I-AL-RN 333 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~--~~~~~-~-~L-~~ 333 (484)
..+|+++|.||||||||+|+|+|.+. .||+.||+|-...+..+ +..+.++|.||+..-... ++.+. . .+ ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 35799999999999999999999985 89999999999888664 557999999999875433 33222 1 22 23
Q ss_pred cccccccCCCchhHH-----HHHhhCCcchhhhhcCCC
Q 011507 334 CKRIEKLDDPVGPVK-----EILNRCPANLLISLYKLP 366 (484)
Q Consensus 334 ~~~i~~l~d~~~~v~-----~il~~~~~~~l~~~~ki~ 366 (484)
.|.+..+.|....-+ .-|...+.+.+..+|.+|
T Consensus 82 ~D~ivnVvDAtnLeRnLyltlQLlE~g~p~ilaLNm~D 119 (653)
T COG0370 82 PDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMID 119 (653)
T ss_pred CCEEEEEcccchHHHHHHHHHHHHHcCCCeEEEeccHh
Confidence 455566666543221 122333444555556555
No 72
>COG1159 Era GTPase [General function prediction only]
Probab=99.01 E-value=2.3e-09 Score=105.43 Aligned_cols=111 Identities=22% Similarity=0.278 Sum_probs=95.3
Q ss_pred CCCCCcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHh
Q 011507 125 GKNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLRE 203 (484)
Q Consensus 125 ~~~~~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~ 203 (484)
-++++.+.+.|.+++++.+..+|+|++|+||.++++.....+.+.++. .+.|+|+++||||+++.+. +.+..+++..
T Consensus 65 h~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~ 142 (298)
T COG1159 65 HKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKK 142 (298)
T ss_pred CCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHh
Confidence 367899999999999999999999999999999999988888888765 3579999999999998877 6788888888
Q ss_pred cCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhccc
Q 011507 204 ELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEI 259 (484)
Q Consensus 204 ~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~ 259 (484)
.+++..+ .++|+..+.|.+.|++.+..|+++++.
T Consensus 143 ~~~f~~i----------------------vpiSA~~g~n~~~L~~~i~~~Lpeg~~ 176 (298)
T COG1159 143 LLPFKEI----------------------VPISALKGDNVDTLLEIIKEYLPEGPW 176 (298)
T ss_pred hCCcceE----------------------EEeeccccCCHHHHHHHHHHhCCCCCC
Confidence 7765433 366778889999999999999998764
No 73
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.00 E-value=7.4e-10 Score=99.48 Aligned_cols=107 Identities=28% Similarity=0.401 Sum_probs=69.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChH-----HHHHHhc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEND-----ASIALRN 333 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~-----~~~~L~~ 333 (484)
+.+|+++|.||+|||||+|+|.+..++.+++.+++|+....... ...+.++||||+..+...... ....+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998888888888887655332 246889999999866432111 1223444
Q ss_pred cccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCC
Q 011507 334 CKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 334 ~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~ 368 (484)
++.+..+.|...+ +...+.....+.+...+++|..
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~ 124 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLV 124 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcc
Confidence 4444444333221 1222333334566677777654
No 74
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.98 E-value=7.8e-10 Score=100.89 Aligned_cols=80 Identities=23% Similarity=0.309 Sum_probs=55.8
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CC-cEEEEecCCCccCCCC----ChHHHHHHhccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DK-NVKLLDCPGVVMLKSG----ENDASIALRNCK 335 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~-~i~liDTPGi~~~~~~----~~~~~~~L~~~~ 335 (484)
.|++||.||||||||+|+|.+... .++..||+|+...... . +. .+.|+||||+...... .......+..|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 489999999999999999998775 6888899988765433 2 33 7899999998643221 122223345566
Q ss_pred cccccCCCc
Q 011507 336 RIEKLDDPV 344 (484)
Q Consensus 336 ~i~~l~d~~ 344 (484)
.+..+.|..
T Consensus 81 ~vi~v~D~~ 89 (170)
T cd01898 81 LLLHVIDLS 89 (170)
T ss_pred EEEEEEecC
Confidence 665555543
No 75
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.98 E-value=7.3e-10 Score=99.25 Aligned_cols=104 Identities=26% Similarity=0.373 Sum_probs=69.4
Q ss_pred EEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHHhccccc
Q 011507 266 GVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNCKRI 337 (484)
Q Consensus 266 ~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~-----~~~~~~~L~~~~~i 337 (484)
+++|.+|||||||+|+|.+.....++..|++|+....... +..+.++||||+...... .......++.++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5799999999999999999987788899999987655432 457899999999764320 01223345666665
Q ss_pred cccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC
Q 011507 338 EKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 338 ~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
..+.|.... +...+.....+.+..+|++|...
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 119 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIK 119 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCC
Confidence 555443221 12234444556677778876543
No 76
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.96 E-value=9.1e-10 Score=103.17 Aligned_cols=60 Identities=33% Similarity=0.513 Sum_probs=53.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||||+|.+.. .+.+++.+|+|+....+.++.++.|+||||+...
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~ 83 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYA 83 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCc
Confidence 35789999999999999999999975 7788999999999888777789999999998654
No 77
>PRK11058 GTPase HflX; Provisional
Probab=98.96 E-value=9.2e-10 Score=116.00 Aligned_cols=106 Identities=19% Similarity=0.198 Sum_probs=71.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--EeC--CcEEEEecCCCccCCCCC--hHH---HHHHhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QLD--KNVKLLDCPGVVMLKSGE--NDA---SIALRN 333 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l~--~~i~liDTPGi~~~~~~~--~~~---~~~L~~ 333 (484)
..|+|||+||||||||+|+|++..+. +++.||+|++.... .++ ..+.|+||||++...+.+ ..+ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999998875 88999999987653 333 378899999996431111 111 123466
Q ss_pred cccccccCCCchhH--------HHHHhhC---CcchhhhhcCCCCCC
Q 011507 334 CKRIEKLDDPVGPV--------KEILNRC---PANLLISLYKLPSFD 369 (484)
Q Consensus 334 ~~~i~~l~d~~~~v--------~~il~~~---~~~~l~~~~ki~~~~ 369 (484)
++.+.++.|...+. ..++..+ ..+.+.+.||+|...
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 77676666543321 2334433 346677889988654
No 78
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.93 E-value=3.2e-09 Score=119.21 Aligned_cols=121 Identities=24% Similarity=0.329 Sum_probs=79.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC------ChHH-HHHH
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG------ENDA-SIAL 331 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~------~~~~-~~~L 331 (484)
.++|+++|.||||||||+|+|++.+. .+++.||+|.+.....+ +..+.++||||+..-... ++.. ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 47899999999999999999999875 79999999998766543 357999999999754321 1111 1122
Q ss_pred --hccccccccCCCchhH-----HHHHhhCCcchhhhhcCCCCCC--CHHHHHHHHHHHhC
Q 011507 332 --RNCKRIEKLDDPVGPV-----KEILNRCPANLLISLYKLPSFD--SVDDFLQKVATVRG 383 (484)
Q Consensus 332 --~~~~~i~~l~d~~~~v-----~~il~~~~~~~l~~~~ki~~~~--~~~e~l~~la~~~g 383 (484)
..++.+..+.|..... ...+...+.+.+..+|++|..+ ....-+..+++..|
T Consensus 82 ~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG 142 (772)
T PRK09554 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLG 142 (772)
T ss_pred hccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhC
Confidence 3556555565653321 1223445667788889888542 22333444555555
No 79
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.93 E-value=2.6e-09 Score=96.92 Aligned_cols=108 Identities=26% Similarity=0.317 Sum_probs=69.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCCh--------HHHHH
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN--------DASIA 330 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~--------~~~~~ 330 (484)
.++|+++|.||+|||||+|+|.+.....+++.|++|+...... . +..+.++||||+........ .....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 4789999999999999999999988777888999998765432 2 34688999999976532111 11223
Q ss_pred HhccccccccCCCchhH-------HHHHhhCCcchhhhhcCCCCCC
Q 011507 331 LRNCKRIEKLDDPVGPV-------KEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 331 L~~~~~i~~l~d~~~~v-------~~il~~~~~~~l~~~~ki~~~~ 369 (484)
+.+++.+..+.|...+. ...+.....+.+..+|+++...
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 127 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVE 127 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 45555555554432221 1112222345666777776543
No 80
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.92 E-value=2.4e-09 Score=95.73 Aligned_cols=106 Identities=29% Similarity=0.348 Sum_probs=69.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCCh-----HHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN-----DASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~-----~~~~~L~~~ 334 (484)
++|+++|.||+|||||+|+|.+...+.+++.||+|....... + +..+.++||||+......-. .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 579999999999999999999998888899999998866433 3 34789999999875532111 122344555
Q ss_pred ccccccCCCch---h-HHHHHh-hCCcchhhhhcCCCCC
Q 011507 335 KRIEKLDDPVG---P-VKEILN-RCPANLLISLYKLPSF 368 (484)
Q Consensus 335 ~~i~~l~d~~~---~-v~~il~-~~~~~~l~~~~ki~~~ 368 (484)
+.+..+.|... . ...++. ....+.+...|++|..
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLL 120 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcC
Confidence 55555544432 1 112222 2334566667777654
No 81
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.89 E-value=2.5e-09 Score=97.90 Aligned_cols=76 Identities=29% Similarity=0.396 Sum_probs=54.8
Q ss_pred EecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e--CCcEEEEecCCCccCCCCC----hHHHHHHhcccccc
Q 011507 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L--DKNVKLLDCPGVVMLKSGE----NDASIALRNCKRIE 338 (484)
Q Consensus 267 vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l--~~~i~liDTPGi~~~~~~~----~~~~~~L~~~~~i~ 338 (484)
++|.+|||||||+|+|.+... .+++.|++|....... . +..+.|+||||+....... ......+.+++.+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999876 6888999998765433 2 4678999999986432211 13334566677666
Q ss_pred ccCCC
Q 011507 339 KLDDP 343 (484)
Q Consensus 339 ~l~d~ 343 (484)
.+.|.
T Consensus 80 ~v~d~ 84 (176)
T cd01881 80 HVVDA 84 (176)
T ss_pred EEEec
Confidence 55554
No 82
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.88 E-value=2.7e-09 Score=101.92 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=48.6
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceec------------------------------CCCCeeeeeEEEEe---CCcEE
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVG------------------------------ATPGLTRSMQEVQL---DKNVK 310 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~------------------------------~~pg~Tr~~~~~~l---~~~i~ 310 (484)
+|+|||.||+|||||+|+|+...-+.++ ..+|+|++.....+ +..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999854322221 12788888665443 45799
Q ss_pred EEecCCCccCCCCChHHHHHHhccccccccCC
Q 011507 311 LLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 311 liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d 342 (484)
|+||||.... .......+..++.+..+.|
T Consensus 81 liDTpG~~~~---~~~~~~~~~~ad~~llVvD 109 (208)
T cd04166 81 IADTPGHEQY---TRNMVTGASTADLAILLVD 109 (208)
T ss_pred EEECCcHHHH---HHHHHHhhhhCCEEEEEEE
Confidence 9999997421 0112233455555544444
No 83
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.86 E-value=8.3e-09 Score=111.29 Aligned_cols=64 Identities=25% Similarity=0.292 Sum_probs=50.5
Q ss_pred ccccceEEEEecCCCCchhHHHHHhhcCccceecCC-CCeeeeeEEE-Ee-CCcEEEEecCCCccCC
Q 011507 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT-PGLTRSMQEV-QL-DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 258 ~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~-pg~Tr~~~~~-~l-~~~i~liDTPGi~~~~ 321 (484)
++..+++|+|||.|||||||+||+|++..++.++.. |+||+..... .. +..+.||||||+....
T Consensus 114 ~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 114 PLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 345678999999999999999999999988777775 6666643322 22 4679999999999874
No 84
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.86 E-value=1e-09 Score=113.52 Aligned_cols=61 Identities=31% Similarity=0.380 Sum_probs=53.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKS 322 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~ 322 (484)
...++.|+|+|||||||++|.+++..+ .|.++|+||+.+-..+++. .++++|||||.....
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcch
Confidence 467899999999999999999999986 7999999999987777664 578999999998744
No 85
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.85 E-value=5.1e-09 Score=101.90 Aligned_cols=80 Identities=25% Similarity=0.338 Sum_probs=60.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCC----hHHHHHHhcccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE----NDASIALRNCKR 336 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~----~~~~~~L~~~~~ 336 (484)
+|+++|.||||||||+|+|++... .+++.|++|....... . +..+.++||||+....... ......+++++.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 689999999999999999999873 5889999998766543 2 5578999999987653221 223446778887
Q ss_pred ccccCCCc
Q 011507 337 IEKLDDPV 344 (484)
Q Consensus 337 i~~l~d~~ 344 (484)
+..+.|..
T Consensus 81 il~V~D~t 88 (233)
T cd01896 81 ILMVLDAT 88 (233)
T ss_pred EEEEecCC
Confidence 76666643
No 86
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.78 E-value=8.8e-09 Score=92.52 Aligned_cols=100 Identities=26% Similarity=0.396 Sum_probs=63.0
Q ss_pred EecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCccCCCC--ChHH-HHHH--hcccccc
Q 011507 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSG--ENDA-SIAL--RNCKRIE 338 (484)
Q Consensus 267 vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~~~~~--~~~~-~~~L--~~~~~i~ 338 (484)
|+|.+|||||||+|+|.+.. ..++..||+|.+.+. +.+ +.++.|+||||+...... +... ...+ .+++.+.
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 58999999999999999986 578889999998754 333 347899999998654221 1111 1223 2566555
Q ss_pred ccCCCchhHH--H---HHhhCCcchhhhhcCCCC
Q 011507 339 KLDDPVGPVK--E---ILNRCPANLLISLYKLPS 367 (484)
Q Consensus 339 ~l~d~~~~v~--~---il~~~~~~~l~~~~ki~~ 367 (484)
.+.|...+-. . .+.....+.+.+.|++|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl 113 (158)
T cd01879 80 NVVDATNLERNLYLTLQLLELGLPVVVALNMIDE 113 (158)
T ss_pred EEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhh
Confidence 5555433211 1 122234456666677664
No 87
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.75 E-value=1.3e-08 Score=92.81 Aligned_cols=55 Identities=36% Similarity=0.521 Sum_probs=45.5
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCcc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVM 319 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~ 319 (484)
+|+++|.||||||||+|+|.+... .+++.|++|+....... +..+.|+||||+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLD 59 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCC
Confidence 689999999999999999999875 46778898887765443 24799999999864
No 88
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.70 E-value=3.8e-08 Score=93.18 Aligned_cols=59 Identities=31% Similarity=0.300 Sum_probs=45.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CC-cEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DK-NVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~-~i~liDTPGi~~~ 320 (484)
..++|+|+|.||||||||+|+|.+... .+.+.+++|....... + +. .+.|+||||+...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 102 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRD 102 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccC
Confidence 347999999999999999999999864 4566677776654322 2 22 7899999999654
No 89
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.68 E-value=2.9e-08 Score=89.36 Aligned_cols=56 Identities=38% Similarity=0.567 Sum_probs=49.2
Q ss_pred EEEecCCCCchhHHHHHhh-cCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 265 VGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~-~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
|+++|.+|+|||||+|+|. +.....+++.+|+|.....+..+..+.++||||+...
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~ 58 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYA 58 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCcccc
Confidence 8999999999999999999 3555678889999998877777889999999998765
No 90
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.67 E-value=3.3e-08 Score=87.43 Aligned_cols=55 Identities=36% Similarity=0.512 Sum_probs=45.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~---~~i~liDTPGi~ 318 (484)
++|+++|.+|+|||||+|+|.+.. ...+..|++|.+... +..+ ..+.++||||..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~ 61 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE 61 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc
Confidence 689999999999999999999988 677888899888765 3343 357889999943
No 91
>COG2262 HflX GTPases [General function prediction only]
Probab=98.67 E-value=3.5e-08 Score=100.81 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=77.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe--CCcEEEEecCCCccCCCCC--hHHHH---HH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL--DKNVKLLDCPGVVMLKSGE--NDASI---AL 331 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l--~~~i~liDTPGi~~~~~~~--~~~~~---~L 331 (484)
.-..|++|||+|+|||||+|+|++..+ .+.+..+.|-+... +.+ +..+.|.||-|++..-+.. ..+.. ..
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 357899999999999999999998775 46677777666443 233 4679999999999764432 22222 23
Q ss_pred hccccccccCCCchh--------HHHHHhhC---CcchhhhhcCCCCCCCHH
Q 011507 332 RNCKRIEKLDDPVGP--------VKEILNRC---PANLLISLYKLPSFDSVD 372 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~--------v~~il~~~---~~~~l~~~~ki~~~~~~~ 372 (484)
..++.+.++.|...| +..+|... ..+.+.++||+|...+.+
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~ 321 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE 321 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh
Confidence 566777777765443 33456553 357888999998776544
No 92
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.67 E-value=5.5e-08 Score=92.07 Aligned_cols=106 Identities=18% Similarity=0.163 Sum_probs=62.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecC---CCCeeeeeEEEEe--CCcEEEEecCCCccCCCCChHHH--HHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGA---TPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGENDAS--IALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~---~pg~Tr~~~~~~l--~~~i~liDTPGi~~~~~~~~~~~--~~L~~~ 334 (484)
++|+|+|.+|||||||||+|.+..... ... ...+|.....+.. ..++.++||||+........+.. ..+..+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~ 81 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSEY 81 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccCc
Confidence 679999999999999999999854221 111 1224554444432 24789999999986533222221 113445
Q ss_pred ccccccCC-Cchh----HHHHHhhCCcchhhhhcCCCCC
Q 011507 335 KRIEKLDD-PVGP----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 335 ~~i~~l~d-~~~~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
+.+..+.+ .... ....+.....+.+.+.+|+|.+
T Consensus 82 d~~l~v~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~ 120 (197)
T cd04104 82 DFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCCEEEEEecccch
Confidence 54444322 2111 2233444555677888888764
No 93
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.66 E-value=1.8e-07 Score=93.01 Aligned_cols=106 Identities=15% Similarity=0.047 Sum_probs=76.7
Q ss_pred CcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeE
Q 011507 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAV 208 (484)
Q Consensus 129 ~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v 208 (484)
....+.|.+.++..+..+|+|++|+|++++.+.. ..+...+.. .++|+++|+||+|+++++.+..+...+...++..
T Consensus 63 ~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~ 139 (270)
T TIGR00436 63 HSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFK 139 (270)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCC
Confidence 3445667788899999999999999999875543 444455543 3689999999999997766555555554433221
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhccc
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEI 259 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~ 259 (484)
.+ .++|+..+.|.+.|++.|..+++.++.
T Consensus 140 ~v----------------------~~iSA~~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 140 DI----------------------VPISALTGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred ce----------------------EEEecCCCCCHHHHHHHHHHhCCCCCC
Confidence 11 245667888999999999999887664
No 94
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.65 E-value=2.8e-08 Score=95.30 Aligned_cols=63 Identities=25% Similarity=0.411 Sum_probs=42.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceec-CCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCCh
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVG-ATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGEN 325 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~-~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~ 325 (484)
++|.|+|.+++||||++|+|+|..+..++ ...++|+..+... + +..+.++||||+..+...+.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~ 67 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDE 67 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHH
Confidence 47999999999999999999999987665 3445676665543 2 56899999999987654333
No 95
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.65 E-value=3.7e-08 Score=89.49 Aligned_cols=101 Identities=17% Similarity=0.277 Sum_probs=62.7
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e----CCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L----DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l----~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.|+|+|.+|||||||+|+|.+.... ....+++|....... . +..+.++||||..... ......+..++.+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~---~~~~~~~~~~d~i 77 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT---NMRARGASLTDIA 77 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH---HHHHHHHhhcCEE
Confidence 5899999999999999999987753 345567887654332 2 3468999999974321 1112234555555
Q ss_pred cccCCCchh-------HHHHHhhCCcchhhhhcCCCCC
Q 011507 338 EKLDDPVGP-------VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 338 ~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~ 368 (484)
..+.|+... ....+.....+.+...|++|..
T Consensus 78 l~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 115 (168)
T cd01887 78 ILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKP 115 (168)
T ss_pred EEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecc
Confidence 444444221 1122344555667777887643
No 96
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.60 E-value=1.3e-07 Score=93.99 Aligned_cols=118 Identities=17% Similarity=0.240 Sum_probs=74.3
Q ss_pred EEEEecCCCCchhHHHHHhhcC-----ccceec------------CCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRC-----HVANVG------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~-----~~~~v~------------~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~ 323 (484)
+|+++|.+|+|||||+|+|... +...|. ...|+|.+.....+ +.++.|+||||.....
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~-- 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT-- 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHH--
Confidence 4899999999999999999731 111222 23477766544332 4578999999986431
Q ss_pred ChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhCc
Q 011507 324 ENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGK 384 (484)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g~ 384 (484)
......++.++.+..+.|.... +...+.....+.+..+||++... +.+..+..+....+.
T Consensus 79 -~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 79 -IEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred -HHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2345567777666555554321 22233444556788889998764 555666666555443
No 97
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.58 E-value=8e-08 Score=86.68 Aligned_cols=78 Identities=18% Similarity=0.281 Sum_probs=49.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee--cCCCCeeeeeEEE--Ee--CCcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEV--QL--DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v--~~~pg~Tr~~~~~--~l--~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
+.|+|+|.||||||||+|+|++...... ...+|+|...... .+ +..+.++||||.... .......+++++.
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~---~~~~~~~~~~ad~ 77 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF---IKNMLAGAGGIDL 77 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH---HHHHHhhhhcCCE
Confidence 4699999999999999999997643222 2346777665432 22 347899999997321 1112233456665
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 78 ii~V~d~ 84 (164)
T cd04171 78 VLLVVAA 84 (164)
T ss_pred EEEEEEC
Confidence 5555443
No 98
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.58 E-value=6.1e-08 Score=89.31 Aligned_cols=76 Identities=28% Similarity=0.359 Sum_probs=46.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccce--------------ecCCCCeeeeeEEEEe--------CCcEEEEecCCCccCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVAN--------------VGATPGLTRSMQEVQL--------DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~--------------v~~~pg~Tr~~~~~~l--------~~~i~liDTPGi~~~~ 321 (484)
+|++||.+|||||||+|+|.+...+. +....|+|...+.+.+ +..+.|+||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743211 1123466655443322 2357799999986431
Q ss_pred CCChHHHHHHhccccccccCC
Q 011507 322 SGENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d 342 (484)
......+++++.+..+.|
T Consensus 82 ---~~~~~~~~~ad~~i~v~D 99 (179)
T cd01890 82 ---YEVSRSLAACEGALLLVD 99 (179)
T ss_pred ---HHHHHHHHhcCeEEEEEE
Confidence 122334555554444433
No 99
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.58 E-value=9.1e-08 Score=84.58 Aligned_cols=103 Identities=29% Similarity=0.269 Sum_probs=69.3
Q ss_pred EecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCCh----HHHHHHhcccccc
Q 011507 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGEN----DASIALRNCKRIE 338 (484)
Q Consensus 267 vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~~----~~~~~L~~~~~i~ 338 (484)
|+|.+|+|||||+|+|.+.....++..+++|........ ...+.++||||+........ .....+..++.+.
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999999888778889999988776543 45899999999987644332 2333456666655
Q ss_pred ccCCCchhH---H----HHHhhCCcchhhhhcCCCCCC
Q 011507 339 KLDDPVGPV---K----EILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 339 ~l~d~~~~v---~----~il~~~~~~~l~~~~ki~~~~ 369 (484)
.+.|..... . ........+.+.++++++...
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 544432221 1 112223445667778777543
No 100
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.57 E-value=1.4e-07 Score=87.21 Aligned_cols=103 Identities=18% Similarity=0.244 Sum_probs=64.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceec---------------CCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCCh
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVG---------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN 325 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~---------------~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~ 325 (484)
+|+|+|.+|+|||||+|+|.+....... ..+|+|.......+ ...+.|+||||.... ..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~---~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF---SS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH---HH
Confidence 4899999999999999999987654321 12455555443332 346899999997532 12
Q ss_pred HHHHHHhccccccccCCCchh----HHH---HHhhCCcchhhhhcCCCCCC
Q 011507 326 DASIALRNCKRIEKLDDPVGP----VKE---ILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 326 ~~~~~L~~~~~i~~l~d~~~~----v~~---il~~~~~~~l~~~~ki~~~~ 369 (484)
.....++.++.+..+.|.... ... .+.....+.+..+|++|...
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~ 128 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG 128 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence 334456677776666554321 112 22223456677778887653
No 101
>PRK00089 era GTPase Era; Reviewed
Probab=98.55 E-value=5.4e-07 Score=90.43 Aligned_cols=106 Identities=23% Similarity=0.276 Sum_probs=80.8
Q ss_pred CcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCCe
Q 011507 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELPA 207 (484)
Q Consensus 129 ~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv-p~e~~~~wl~~l~~~~p~ 207 (484)
....+.|....+..+..+|+|++|+|+.++++.....+.+.+.. .++|+++|+||+|++ +++.+..++..+.+.++.
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~ 145 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDF 145 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCC
Confidence 44556777888999999999999999999877666666666553 368999999999999 667777788777765542
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~ 258 (484)
..+ .+.|+..+.|.+.|++.|..+++.++
T Consensus 146 ~~i----------------------~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 146 AEI----------------------VPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred CeE----------------------EEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 222 13456677899999999998887654
No 102
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.53 E-value=1.4e-07 Score=91.35 Aligned_cols=61 Identities=25% Similarity=0.246 Sum_probs=48.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC--ccceecCCCCeeeeeEEEE--e----CCcEEEEecCCCccCCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC--HVANVGATPGLTRSMQEVQ--L----DKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~--~~~~v~~~pg~Tr~~~~~~--l----~~~i~liDTPGi~~~~~ 322 (484)
-..|+|+|.|++|||||+|.|.+. ........+.||+.+.... . +..++++||||+..+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 467999999999999999999998 5544455578888765433 2 36799999999997744
No 103
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.52 E-value=8.4e-08 Score=93.39 Aligned_cols=64 Identities=33% Similarity=0.358 Sum_probs=49.0
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCee----eeeEEEEeCCcEEEEecCCCccCCCCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT----RSMQEVQLDKNVKLLDCPGVVMLKSGE 324 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T----r~~~~~~l~~~i~liDTPGi~~~~~~~ 324 (484)
+.+++|.++|.+++|||||||+|.......|+..+-+| +..+.+. +..+.|.||||+......+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~D 104 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDKD 104 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhhh
Confidence 35789999999999999999999977666666555444 3333444 3789999999999875544
No 104
>PRK15494 era GTPase Era; Provisional
Probab=98.52 E-value=5.6e-07 Score=92.47 Aligned_cols=107 Identities=13% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe
Q 011507 128 RDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA 207 (484)
Q Consensus 128 ~~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~ 207 (484)
.....+.|.+..+..+..+|+||+|+|+++++......+.+.+.. .+.|.|+|+||+||.+. .+....+++...++.
T Consensus 114 ~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~ 190 (339)
T PRK15494 114 KGSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPD 190 (339)
T ss_pred cccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCC
Confidence 344567788899999999999999999999877654445555543 25788999999999765 344555666555443
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhccc
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEI 259 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~ 259 (484)
..+ .++|+.++.|.+.|++.|..+++.++.
T Consensus 191 ~~i----------------------~~iSAktg~gv~eL~~~L~~~l~~~~~ 220 (339)
T PRK15494 191 SLL----------------------FPISALSGKNIDGLLEYITSKAKISPW 220 (339)
T ss_pred cEE----------------------EEEeccCccCHHHHHHHHHHhCCCCCC
Confidence 222 145667788999999999999887663
No 105
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.51 E-value=2e-07 Score=85.09 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=44.5
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCC-hHHHHHHhccccccccCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE-NDASIALRNCKRIEKLDD 342 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~-~~~~~~L~~~~~i~~l~d 342 (484)
+|++||.||||||||+|+|.+... +. ..|.. +.+... .++||||........ ......+.+++.+..+.|
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~--~~---~~~~~---v~~~~~-~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT--LA---RKTQA---VEFNDK-GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc--cC---ccceE---EEECCC-CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 699999999999999999998752 11 12222 222111 269999987653211 122234567777666655
Q ss_pred Cc
Q 011507 343 PV 344 (484)
Q Consensus 343 ~~ 344 (484)
..
T Consensus 74 ~~ 75 (158)
T PRK15467 74 AN 75 (158)
T ss_pred CC
Confidence 43
No 106
>PRK09866 hypothetical protein; Provisional
Probab=98.51 E-value=2.9e-07 Score=99.32 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=46.0
Q ss_pred CcEEEEecCCCccCCCC--ChHHHHHHhccccccccCCCch-------hHHHHHhhCCc--chhhhhcCCCCCC----CH
Q 011507 307 KNVKLLDCPGVVMLKSG--ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPA--NLLISLYKLPSFD----SV 371 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~--~~~~~~~L~~~~~i~~l~d~~~-------~v~~il~~~~~--~~l~~~~ki~~~~----~~ 371 (484)
.+++|+||||+..+... +......+..++.+.++.|... .+...++..++ +.++++||+|... +.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 57899999999977433 2223346888888888877533 12233444443 7788889998753 13
Q ss_pred HHHHHHHH
Q 011507 372 DDFLQKVA 379 (484)
Q Consensus 372 ~e~l~~la 379 (484)
+.++..+.
T Consensus 310 E~Lle~V~ 317 (741)
T PRK09866 310 DQVRALIS 317 (741)
T ss_pred HHHHHHHH
Confidence 44445443
No 107
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.49 E-value=6.5e-08 Score=90.79 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=35.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCC-CCeeee--eEEEEeCC---cEEEEecCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGAT-PGLTRS--MQEVQLDK---NVKLLDCPGV 317 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~-pg~Tr~--~~~~~l~~---~i~liDTPGi 317 (484)
++|+|||.+|||||||+|.+.+.... ++.. |.++.. ...+.++. .+.|+||||-
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 60 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFL-NGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ 60 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-ccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc
Confidence 36999999999999999999987642 2222 222212 12233433 5789999994
No 108
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.49 E-value=1.8e-07 Score=87.93 Aligned_cols=103 Identities=21% Similarity=0.264 Sum_probs=60.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcC------ccceecCCCCeeeeeEEE--Ee---------------CCcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC------HVANVGATPGLTRSMQEV--QL---------------DKNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~------~~~~v~~~pg~Tr~~~~~--~l---------------~~~i~liDTPGi~~ 319 (484)
++|+++|.+|||||||+|+|.+. ........+|+|.+.... .+ ...+.|+||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 112234456787765432 11 34789999999742
Q ss_pred CCCCChHHHHHHhccccccccCCCch---h-H---HHHHhhCCcchhhhhcCCCCC
Q 011507 320 LKSGENDASIALRNCKRIEKLDDPVG---P-V---KEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~d~~~---~-v---~~il~~~~~~~l~~~~ki~~~ 368 (484)
- .......+..++.+..+.|... . . ..+......+.+...||+|..
T Consensus 81 ~---~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 L---IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred H---HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 1 1122223344444444444322 1 1 112233445666777888765
No 109
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.49 E-value=4.8e-07 Score=93.18 Aligned_cols=145 Identities=18% Similarity=0.244 Sum_probs=90.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC----ccc-----------eecCCCC---eeeeeEEE-------EeC----CcEEE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC----HVA-----------NVGATPG---LTRSMQEV-------QLD----KNVKL 311 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~----~~~-----------~v~~~pg---~Tr~~~~~-------~l~----~~i~l 311 (484)
+.+.|||||.-|+|||||||++.+. .++ -+++.+| +|+++..+ .+. ..+.|
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999999999999999 666 6889999 88886652 333 57999
Q ss_pred EecCCCccCCCCC----hH----------------------HHHHHh-ccccccccC-CC----------ch---hHHHH
Q 011507 312 LDCPGVVMLKSGE----ND----------------------ASIALR-NCKRIEKLD-DP----------VG---PVKEI 350 (484)
Q Consensus 312 iDTPGi~~~~~~~----~~----------------------~~~~L~-~~~~i~~l~-d~----------~~---~v~~i 350 (484)
+||+|+......+ .. ...++. .++-...+. |. .. .+-.-
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999998663211 11 233444 222111111 32 11 12234
Q ss_pred HhhCCcchhhhhcCCCCC-CCHHHHHHHHHHHhCcc--c----cCCcccHHHHHHHHHHHHH
Q 011507 351 LNRCPANLLISLYKLPSF-DSVDDFLQKVATVRGKL--K----KGGIVDVEAAARIILHDWN 405 (484)
Q Consensus 351 l~~~~~~~l~~~~ki~~~-~~~~e~l~~la~~~g~l--~----kgg~~d~~~aa~~~l~d~~ 405 (484)
|+..+++.+.++|+.+.+ ....++...+..+.+.. . .=...|+...-+.+|.+|-
T Consensus 176 Lk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 176 LKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 677788889999998855 34444444454443421 0 0123466666666666554
No 110
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.46 E-value=1.4e-07 Score=86.17 Aligned_cols=32 Identities=38% Similarity=0.474 Sum_probs=26.9
Q ss_pred EEEecCCCCchhHHHHHhhcCccceecCCCCe
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGL 296 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~ 296 (484)
|+|+|..++|||||||+|.|..+..++..|.|
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T 32 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCT 32 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTT
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccc
Confidence 78999999999999999999988777766543
No 111
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.46 E-value=2.7e-07 Score=101.33 Aligned_cols=98 Identities=24% Similarity=0.357 Sum_probs=62.9
Q ss_pred cCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC--hHHH-H--HHhcccccccc
Q 011507 269 GLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE--NDAS-I--ALRNCKRIEKL 340 (484)
Q Consensus 269 G~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~--~~~~-~--~L~~~~~i~~l 340 (484)
|.||||||||+|+|++.+. .+++.||+|.+.....+ +.++.++||||........ +... . ....++.+..+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999874 79999999998765432 4578999999997643221 1111 1 12345555555
Q ss_pred CCCchh---HHH--HHhhCCcchhhhhcCCCC
Q 011507 341 DDPVGP---VKE--ILNRCPANLLISLYKLPS 367 (484)
Q Consensus 341 ~d~~~~---v~~--il~~~~~~~l~~~~ki~~ 367 (484)
.|.... ... .+.....+.+...|++|.
T Consensus 80 vDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 80 VDASNLERNLYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred ecCCcchhhHHHHHHHHhcCCCEEEEEehhHH
Confidence 554331 111 112234456667777764
No 112
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.46 E-value=1e-06 Score=79.61 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=39.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
.++|+++|.||||||||+|++.+... +...++++... ....++. .+.++||||...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 62 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEE 62 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcc
Confidence 47899999999999999999997653 34444444432 1222333 477899999653
No 113
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.45 E-value=4.2e-07 Score=86.05 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=65.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcc--c----e---------ecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHV--A----N---------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~--~----~---------v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~ 323 (484)
.++|+++|.+|+|||||+++|++... . . ....+|+|.+.....+ +.++.|+||||+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~--- 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY--- 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH---
Confidence 37899999999999999999986410 0 0 0115688887665544 457899999998532
Q ss_pred ChHHHHHHhccccccccCCCch-------hHHHHHhhCCcc-hhhhhcCCCCCC
Q 011507 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPAN-LLISLYKLPSFD 369 (484)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~d~~~-------~v~~il~~~~~~-~l~~~~ki~~~~ 369 (484)
.......+..++.+..+.|... ....++.....+ .+..+||+|...
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC
Confidence 1223345555655544544322 112234444444 456779998764
No 114
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.45 E-value=3.4e-07 Score=83.78 Aligned_cols=68 Identities=19% Similarity=0.389 Sum_probs=47.9
Q ss_pred HHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 247 IKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 247 l~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
+..+.++.+. ...++|+|+|.+|||||||+|+|.+.......++.|.+.....+. +..+.++||||..
T Consensus 2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~-~~~~~~~D~~G~~ 69 (173)
T cd04155 2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSD-GFKLNVWDIGGQR 69 (173)
T ss_pred hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEEC-CEEEEEEECCCCH
Confidence 3444444433 246899999999999999999999986655666667554332222 4568899999963
No 115
>PLN03118 Rab family protein; Provisional
Probab=98.45 E-value=4.9e-07 Score=86.28 Aligned_cols=81 Identities=25% Similarity=0.317 Sum_probs=56.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
+..++|+|||.+|||||||+|+|.+.......++.|++.....+.++. .+.|+||||..... ......+++++.
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~~d~ 88 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFR---TLTSSYYRNAQG 88 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhH---HHHHHHHhcCCE
Confidence 346899999999999999999999887666666666665555555543 57899999964331 122335566666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 89 ~vlv~D~ 95 (211)
T PLN03118 89 IILVYDV 95 (211)
T ss_pred EEEEEEC
Confidence 5544443
No 116
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.44 E-value=1.3e-06 Score=78.07 Aligned_cols=96 Identities=24% Similarity=0.323 Sum_probs=75.2
Q ss_pred CcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCCe
Q 011507 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELPA 207 (484)
Q Consensus 129 ~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv-p~e~~~~wl~~l~~~~p~ 207 (484)
.-..+.||+.|.....+||+|++|.||.+|.+...|.+...+ ++|+|=|+||+||. +.+.++.-.++|+...-.
T Consensus 47 yiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~ 121 (143)
T PF10662_consen 47 YIENPRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVK 121 (143)
T ss_pred heeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCC
Confidence 344578999999999999999999999999999999988775 58999999999999 444555555556554322
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
-.| .+|+.++.|.+.|.++|.+
T Consensus 122 ~if-----------------------~vS~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 122 EIF-----------------------EVSAVTGEGIEELKDYLEE 143 (143)
T ss_pred CeE-----------------------EEECCCCcCHHHHHHHHhC
Confidence 224 3566788999999998863
No 117
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.43 E-value=3e-07 Score=102.11 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=61.3
Q ss_pred ccccceEEEEecCCCCchhHHHHHhhcCcccee----------cCCCCeeee----------------------eEEEEe
Q 011507 258 EIKKSITVGVIGLPNVGKSSLINSLKRCHVANV----------GATPGLTRS----------------------MQEVQL 305 (484)
Q Consensus 258 ~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v----------~~~pg~Tr~----------------------~~~~~l 305 (484)
..+..++|++||.||+|||||+|+|+...-+.+ +..+|+||+ .....+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 344568999999999999999999997543322 123455443 222221
Q ss_pred ---CCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCC-cchhhhhcCCCCCC
Q 011507 306 ---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 306 ---~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~-~~~l~~~~ki~~~~ 369 (484)
+.++.|+||||...- .......+..++.+..+.|.... ...++.... +..+..+||+|...
T Consensus 100 ~~~~~~~~liDtPG~~~f---~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQY---TRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred ccCCceEEEEECCChHHH---HHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccccc
Confidence 347899999996421 11122234555544444443211 122333333 34455678887643
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.43 E-value=3.9e-07 Score=82.25 Aligned_cols=78 Identities=22% Similarity=0.276 Sum_probs=51.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccccccCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
+|+++|.+|||||||+|+|.+.......++.|.+.....+.-...+.++||||.... .......+.+++.+..+.|.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~---~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKM---RTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhH---HHHHHHHhccCCEEEEEEEC
Confidence 489999999999999999998876555555555433222221246889999997432 11223346667766666554
Q ss_pred c
Q 011507 344 V 344 (484)
Q Consensus 344 ~ 344 (484)
.
T Consensus 78 ~ 78 (160)
T cd04156 78 S 78 (160)
T ss_pred C
Confidence 3
No 119
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.43 E-value=1.3e-06 Score=81.75 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCC---
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELP--- 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~~p--- 206 (484)
..|.+++...+..+|++|.|+||.+++..........+... +.|+|+|+||+|++..+ .++.+...|-+.++
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~--~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILREL--GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT--T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred cceeecccceecccccceeeeeccccccccccccccccccc--ccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence 45888999999999999999999998765555555555443 68899999999999432 24445534422221
Q ss_pred --eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 --AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 --~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+++ .+.|+..+.|.+.|++.|.++.|
T Consensus 159 ~~~~~v----------------------i~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 159 EEIVPV----------------------IPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TSTEEE----------------------EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cccceE----------------------EEEecCCCCCHHHHHHHHHHhCc
Confidence 1222 24567788999999999998876
No 120
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.42 E-value=3.9e-07 Score=96.47 Aligned_cols=107 Identities=17% Similarity=0.219 Sum_probs=65.5
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceec------------------------------CCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVG------------------------------ATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~------------------------------~~pg~Tr~~~~~~l---~ 306 (484)
++.++|+++|.+|+|||||+|+|+....+.+. ..+|+|++.....+ +
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 35689999999999999999999854322111 15899999877655 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCch---------hHHHHHhhCC-cchhhhhcCCCCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG---------PVKEILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~---------~v~~il~~~~-~~~l~~~~ki~~~~ 369 (484)
..+.|+||||...-. ......+..++.+..+.|... ....++.... ++.+...||+|...
T Consensus 84 ~~i~liDtpG~~~~~---~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 84 YYFTIVDCPGHRDFV---KNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred eEEEEEECCCcccch---hhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 578999999963211 111222345555444433322 1112233333 24566789988653
No 121
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.42 E-value=1.1e-07 Score=91.00 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=59.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCCh----HHHHHHhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN----DASIALRN 333 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~----~~~~~L~~ 333 (484)
...+|++||+|.||||||+..|+..+. ..+.+-+||-......+ +.+|.++|.|||+...+.+. ++..+-+.
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 357899999999999999999998874 56677788887665433 67899999999998865432 22223345
Q ss_pred cccccccCCC
Q 011507 334 CKRIEKLDDP 343 (484)
Q Consensus 334 ~~~i~~l~d~ 343 (484)
++.+..+.|+
T Consensus 140 aDlilMvLDa 149 (364)
T KOG1486|consen 140 ADLILMVLDA 149 (364)
T ss_pred ccEEEEEecC
Confidence 5555555554
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.42 E-value=9e-07 Score=81.69 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=53.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
..+|+++|.+|||||||+|+|.........++.|.+.. .+.. +..+.|+||||...- .......+.+++.+..+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVE--EIVYKNIRFLMWDIGGQESL---RSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceE--EEEECCeEEEEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 47899999999999999999987665555555555432 2333 347899999997422 11223456777777666
Q ss_pred CCCc
Q 011507 341 DDPV 344 (484)
Q Consensus 341 ~d~~ 344 (484)
.|..
T Consensus 90 ~D~s 93 (174)
T cd04153 90 IDST 93 (174)
T ss_pred EECC
Confidence 6653
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.42 E-value=6.7e-07 Score=83.50 Aligned_cols=79 Identities=23% Similarity=0.229 Sum_probs=53.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
..++|+++|.+|||||||+|.|.+.....+.++.+.|.. .+.. +..+.++||||..... ......+.+++.+..
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSE--ELAIGNIKFTTFDLGGHQQAR---RLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceE--EEEECCEEEEEEECCCCHHHH---HHHHHHhCCCCEEEE
Confidence 458899999999999999999998876555444444432 2222 3468899999975331 122345667777766
Q ss_pred cCCCc
Q 011507 340 LDDPV 344 (484)
Q Consensus 340 l~d~~ 344 (484)
+.|..
T Consensus 91 vvD~~ 95 (184)
T smart00178 91 LVDAY 95 (184)
T ss_pred EEECC
Confidence 66643
No 124
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.38 E-value=5.2e-07 Score=81.37 Aligned_cols=53 Identities=19% Similarity=0.261 Sum_probs=40.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeCC---cEEEEecCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGV 317 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~~---~i~liDTPGi 317 (484)
+|+++|.||||||||+|+|.+.+.. ....|++|.+... +.++. .+.++||||-
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 59 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ 59 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCc
Confidence 6999999999999999999988753 3556676665433 33332 4789999994
No 125
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.38 E-value=5e-07 Score=80.30 Aligned_cols=78 Identities=18% Similarity=0.238 Sum_probs=50.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
++|+++|.||||||||+|+|.+...... .++.|.+.....+..+ -.+.++||||..... ......+.+++.+.
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~d~ii 77 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR---SITPSYYRGAHGAI 77 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH---HHHHHHhcCCCEEE
Confidence 4799999999999999999998876554 3445555544444443 357899999974321 12233455555554
Q ss_pred ccCCC
Q 011507 339 KLDDP 343 (484)
Q Consensus 339 ~l~d~ 343 (484)
.+.|+
T Consensus 78 ~v~d~ 82 (159)
T cd00154 78 LVYDI 82 (159)
T ss_pred EEEEC
Confidence 44443
No 126
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.37 E-value=9.8e-07 Score=83.01 Aligned_cols=103 Identities=16% Similarity=0.259 Sum_probs=61.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc--ccee-------------cCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH--VANV-------------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE 324 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~--~~~v-------------~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~ 324 (484)
.+|+++|.+|||||||+|+|.+.. .... ....|+|.....+.+ ...+.|+||||...-.
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~--- 79 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFG--- 79 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHH---
Confidence 379999999999999999999631 1110 112566655444333 3468899999985421
Q ss_pred hHHHHHHhccccccccCCCch----hHHHHHh---hCCcchhhhhcCCCCC
Q 011507 325 NDASIALRNCKRIEKLDDPVG----PVKEILN---RCPANLLISLYKLPSF 368 (484)
Q Consensus 325 ~~~~~~L~~~~~i~~l~d~~~----~v~~il~---~~~~~~l~~~~ki~~~ 368 (484)
......+++++.+..+.|... ....++. ....+.+...||+|..
T Consensus 80 ~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 130 (194)
T cd01891 80 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 130 (194)
T ss_pred HHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 223345666666555544322 1122222 2334566678888764
No 127
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.37 E-value=7.7e-07 Score=80.37 Aligned_cols=56 Identities=25% Similarity=0.381 Sum_probs=42.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|+|.+.... ...+++|.+.....+.++ -.+.|+||||..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCch
Confidence 47999999999999999999987653 255666766555555443 257899999954
No 128
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.35 E-value=6.9e-07 Score=82.01 Aligned_cols=72 Identities=21% Similarity=0.218 Sum_probs=44.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEe-CCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
+|+++|.+|||||||+|+|.+.... . +..|.... .+.. +-.+.++||||..... ......+++++.+..+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~--~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~---~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--Q--PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR---PLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--C--cCCcCceeEEEEEECCEEEEEEECCCChhcc---hHHHHHhccCCEEEEE
Confidence 4899999999999999999986432 2 22333222 2222 3468899999975331 1222345666555444
Q ss_pred CC
Q 011507 341 DD 342 (484)
Q Consensus 341 ~d 342 (484)
.|
T Consensus 74 ~D 75 (169)
T cd04158 74 VD 75 (169)
T ss_pred Ee
Confidence 33
No 129
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.35 E-value=7.4e-07 Score=91.69 Aligned_cols=61 Identities=30% Similarity=0.351 Sum_probs=41.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC-----ccceecCCCCeeeeeEEEEeC--CcEEEEecCCCccCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPGLTRSMQEVQLD--KNVKLLDCPGVVMLKS 322 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~-----~~~~v~~~pg~Tr~~~~~~l~--~~i~liDTPGi~~~~~ 322 (484)
..++|||+|-+|+|||||||+|.|- ..+.||.+ .||.....+.-+ .++.|.|.||+..+..
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f 101 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDLPGIGTPNF 101 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE--GGGSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeCCCCCCCCC
Confidence 4689999999999999999999973 34555543 466666666543 4899999999987754
No 130
>CHL00071 tufA elongation factor Tu
Probab=98.34 E-value=8.5e-07 Score=93.43 Aligned_cols=107 Identities=17% Similarity=0.252 Sum_probs=66.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccce---------------ecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~---------------v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+|+|||||+|+|++..... ....+|+|.+.....+ +.++.|+||||...-
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~- 88 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY- 88 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH-
Confidence 457999999999999999999999752211 1123789988665444 346899999995311
Q ss_pred CCChHHHHHHhccccccccCCCch----h---HHHHHhhCCcc-hhhhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPAN-LLISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~----~---v~~il~~~~~~-~l~~~~ki~~~~ 369 (484)
-......+..++.+..+.|... . ...++.....+ .+..+||+|...
T Consensus 89 --~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~ 142 (409)
T CHL00071 89 --VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred --HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCC
Confidence 1122334555555544544322 1 12233444445 456789998754
No 131
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.34 E-value=1.1e-06 Score=79.46 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=41.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---CcEEEEecCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGV 317 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~---~~i~liDTPGi 317 (484)
++|+|+|.+|||||||+|+|.+..... ..+++|.+.....+.++ -.+.++||||-
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~ 60 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch
Confidence 689999999999999999999887544 55566654444444443 25778999995
No 132
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.33 E-value=1.1e-06 Score=80.35 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=48.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
.+|+|||.||||||||+|++.+...... ..+.|.+.....+..+. .+.|+||||.... .......+++++.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~~~~~~~~~~d~il 81 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESF---RSITRSYYRGAAGAL 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH---HHHHHHHhccCCEEE
Confidence 6899999999999999999998765433 23345554444444432 6789999995321 111223445555554
Q ss_pred ccCC
Q 011507 339 KLDD 342 (484)
Q Consensus 339 ~l~d 342 (484)
.+.|
T Consensus 82 ~v~d 85 (168)
T cd01866 82 LVYD 85 (168)
T ss_pred EEEE
Confidence 4444
No 133
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.33 E-value=8.2e-07 Score=81.70 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=41.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
..++|+++|.+|||||||+|+|.+.....+.++.|.+.....+. ...+.++||||..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~l~D~~G~~ 69 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYE-GYKLNIWDVGGQK 69 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEEC-CEEEEEEECCCCH
Confidence 45889999999999999999999886655556556433222221 3467899999974
No 134
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.32 E-value=5.9e-06 Score=73.73 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-C-CeEE
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-L-PAVA 209 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~-p~v~ 209 (484)
.+.++++....+..+|++++|+|+++++......+.+++... +.|+|+|+||+|+.+..... ..+... . +.+
T Consensus 63 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~~~~~~~~---~~~~~~~~~~~~- 136 (157)
T cd01894 63 SKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDNIKEEDEA---AEFYSLGFGEPI- 136 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECcccCChHHHH---HHHHhcCCCCeE-
Confidence 455677777888999999999999999888887787777653 58999999999999876541 112221 1 222
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+..+.|.+.|++.|.+
T Consensus 137 ------------------------~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 137 ------------------------PISAEHGRGIGDLLDAILE 155 (157)
T ss_pred ------------------------EEecccCCCHHHHHHHHHh
Confidence 3445677889999888764
No 135
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.31 E-value=6.6e-06 Score=73.58 Aligned_cols=96 Identities=25% Similarity=0.352 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCCeEEEEc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv-p~e~~~~wl~~l~~~~p~v~f~~ 212 (484)
.+.......+..+|++++|+|+.+|+......+...+... +.|+++|+||+|+. ..+.+..|+.++...++...+.
T Consensus 71 ~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~- 147 (168)
T cd04163 71 RMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIF- 147 (168)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceE-
Confidence 3445567778999999999999999776666776666543 58999999999999 5677788888888776432221
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+..+.|.+.|.+.|.++
T Consensus 148 ---------------------~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 ---------------------PISALKGENVDELLEEIVKY 167 (168)
T ss_pred ---------------------EEEeccCCChHHHHHHHHhh
Confidence 23445677888888888653
No 136
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.31 E-value=1.4e-06 Score=79.09 Aligned_cols=56 Identities=25% Similarity=0.429 Sum_probs=39.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|+|.+.... ...++.|++-....+..+. .+.|+||||..
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~ 63 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQE 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 68999999999999999999987643 2233334332333344433 57899999964
No 137
>PRK09866 hypothetical protein; Provisional
Probab=98.30 E-value=4.8e-06 Score=90.12 Aligned_cols=98 Identities=17% Similarity=0.137 Sum_probs=69.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHH-HHh-cCCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKY-LRE-ELPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~-l~~-~~p~ 207 (484)
+.+.+.+.+..||+||+|+|+..+++..+..+.+.+...+.+.|+|+|+||+|+.+ .+.+..++.. |.. .++.
T Consensus 248 L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f 327 (741)
T PRK09866 248 LQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITP 327 (741)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCC
Confidence 44445567999999999999999888777788888876432249999999999986 4455555542 222 2221
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.. ..++|+..+.|++.|++.|.++-
T Consensus 328 ~e----------------------IfPVSAlkG~nid~LLdeI~~~~ 352 (741)
T PRK09866 328 QQ----------------------IFPVSSMWGYLANRARHELANNG 352 (741)
T ss_pred ce----------------------EEEEeCCCCCCHHHHHHHHHhCC
Confidence 11 12567788899999999998743
No 138
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.29 E-value=2.1e-06 Score=96.33 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=75.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc-----cceecC------------CCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH-----VANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~-----~~~v~~------------~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
-.+|+|||.+|+|||||+|+|.... ...+.+ ..|+|.......+ +.++.|+||||.....
T Consensus 10 irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 10 FRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 3579999999999999999997421 111221 3577776554332 5679999999997542
Q ss_pred CCChHHHHHHhccccccccCCCch-------hHHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
..+...++.++.+..+.|... .+...+.....+.+...||+|... +.+..+..+....+
T Consensus 90 ---~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~ 156 (689)
T TIGR00484 90 ---VEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLG 156 (689)
T ss_pred ---HHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 234556777766655555432 122233444556777889998764 45566666655544
No 139
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.29 E-value=2.5e-06 Score=83.22 Aligned_cols=116 Identities=20% Similarity=0.248 Sum_probs=68.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccc--e---ecC------------CCCeeeeeEEE--Ee-CCcEEEEecCCCccCCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVA--N---VGA------------TPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~--~---v~~------------~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~~ 323 (484)
+|+++|.+|+|||||+|+|+....+ . +.. ..|+|...... .. +.++.|+||||.....
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~-- 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI-- 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchH--
Confidence 4899999999999999999864211 1 111 11223222222 22 4579999999996431
Q ss_pred ChHHHHHHhccccccccCCCch-------hHHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHh
Q 011507 324 ENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVR 382 (484)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~d~~~-------~v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~ 382 (484)
......++.++.+..+.|... .+..++.....+.+...||+|... +.++.+..+....
T Consensus 79 -~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~ 144 (237)
T cd04168 79 -AEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKL 144 (237)
T ss_pred -HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHH
Confidence 233445666665554444322 122344555667778889998653 4566666554443
No 140
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.29 E-value=1.1e-06 Score=85.61 Aligned_cols=61 Identities=31% Similarity=0.396 Sum_probs=52.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecC-CCCeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGA-TPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~-~pg~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
+...+++.|..|||||||||.+.+.+. +.++. .||-|+.++.+.++...+++|.||+....
T Consensus 135 ~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~ 197 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAG 197 (320)
T ss_pred CCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCccccc
Confidence 468899999999999999999998774 33343 89999999999999999999999966553
No 141
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.28 E-value=1.5e-06 Score=82.18 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=45.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC-C---cEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD-K---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~-~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
++|+|+|.+|||||||+|+|.+..... ..++.|.......+.++ . .+.|+||||-.... ......+++++.+
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~a~~~ 77 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFG---GMTRVYYRGAVGA 77 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhh---hhHHHHhCCCCEE
Confidence 479999999999999999999765322 12222222222334443 2 47899999973221 1122345566555
Q ss_pred cccCC
Q 011507 338 EKLDD 342 (484)
Q Consensus 338 ~~l~d 342 (484)
..+.|
T Consensus 78 ilv~D 82 (201)
T cd04107 78 IIVFD 82 (201)
T ss_pred EEEEE
Confidence 44433
No 142
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.28 E-value=1.7e-06 Score=80.63 Aligned_cols=104 Identities=22% Similarity=0.184 Sum_probs=61.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.++|+++|.+|||||||||++.........++.|.+.....+.. +-.+.++||||.... .......+++++.+
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~~~~~~~~d~i 79 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKL---RPLWKSYTRCTDGI 79 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhH---HHHHHHHhccCCEE
Confidence 57899999999999999999987654333233343333333322 235889999996422 11223346677777
Q ss_pred cccCCCchh-----HH----HHHhh---CCcchhhhhcCCCCC
Q 011507 338 EKLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (484)
Q Consensus 338 ~~l~d~~~~-----v~----~il~~---~~~~~l~~~~ki~~~ 368 (484)
..+.|...+ +. .++.. ...+.+.+.|++|..
T Consensus 80 i~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 80 VFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 666665432 11 12221 224566667777643
No 143
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.28 E-value=6.9e-06 Score=78.05 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCC-CCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl-~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~ 211 (484)
..|.++....+..+|++|.|+|+.+|. ..........+... ..+|+|+|+||+||++.......++.+++.+......
T Consensus 94 ~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~ 172 (203)
T cd01888 94 EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-GLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAE 172 (203)
T ss_pred HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-CCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccC
Confidence 457888888899999999999999863 22222222333222 3457899999999998655444444443322110000
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.....++|+..+.|.+.|++.|.+..+.
T Consensus 173 -----------------~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 173 -----------------NAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred -----------------CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 0001245667788999999999887654
No 144
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.28 E-value=2e-06 Score=78.12 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=37.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~ 319 (484)
++|+++|.||||||||+|++..... +...++++.... .+.++. .+.++||||...
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ 61 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCccc
Confidence 5799999999999999999986543 233344443321 233332 456899999753
No 145
>PRK12739 elongation factor G; Reviewed
Probab=98.26 E-value=1.5e-06 Score=97.43 Aligned_cols=119 Identities=14% Similarity=0.228 Sum_probs=77.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC-----ccceecC------------CCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC-----HVANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~-----~~~~v~~------------~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
-.+|+|||.+|+|||||+|+|... +...+.. .+|+|.+.....+ +.++.|+||||+...
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f- 86 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF- 86 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH-
Confidence 467999999999999999999742 2222332 5678877654433 557999999998642
Q ss_pred CCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
..++..+++.++.+..+.|.... +...+.....+.+..+||+|... +.++.+..+....+
T Consensus 87 --~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~ 154 (691)
T PRK12739 87 --TIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLG 154 (691)
T ss_pred --HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhC
Confidence 12456677777776666654322 22233444556788889998764 45556665555444
No 146
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.26 E-value=2.2e-07 Score=87.10 Aligned_cols=105 Identities=19% Similarity=0.278 Sum_probs=62.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-----------------ecCCCCeeeeeEEEEe-----CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-----------------VGATPGLTRSMQEVQL-----DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-----------------v~~~pg~Tr~~~~~~l-----~~~i~liDTPGi~ 318 (484)
+-.+|+|+|..++|||||+++|....... .....|.|.......+ ...+.|+||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35789999999999999999999543110 0112355554433332 4579999999964
Q ss_pred cCCCCChHHHHHHhccccccccCCCch----hHH---HHHhhCCcchhhhhcCCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVG----PVK---EILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~----~v~---~il~~~~~~~l~~~~ki~~~ 368 (484)
.. .......+..++.+..+.|... ... .++.....+.+..+||+|.+
T Consensus 82 ~f---~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DF---IKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HH---HHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ce---eecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch
Confidence 32 1223345666666555554432 122 23334445577777888766
No 147
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.26 E-value=1.4e-06 Score=78.73 Aligned_cols=100 Identities=20% Similarity=0.200 Sum_probs=58.3
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d 342 (484)
+|+++|.+|||||||+|+|.........++-|.+.. .+.. +..+.++||||..... ......+..++.+..+.|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGQTSIR---PYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeE--EEEECCEEEEEEECCCCHHHH---HHHHHHhcCCCEEEEEEE
Confidence 489999999999999999977654333222222221 2222 3468899999985321 122345667777766666
Q ss_pred CchhH------H---HHHhh---CCcchhhhhcCCCCC
Q 011507 343 PVGPV------K---EILNR---CPANLLISLYKLPSF 368 (484)
Q Consensus 343 ~~~~v------~---~il~~---~~~~~l~~~~ki~~~ 368 (484)
...+. . .+++. ...+.+...||+|..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 43321 1 12221 134566677777654
No 148
>PRK00007 elongation factor G; Reviewed
Probab=98.24 E-value=2.6e-06 Score=95.48 Aligned_cols=120 Identities=16% Similarity=0.240 Sum_probs=76.3
Q ss_pred ceEEEEecCCCCchhHHHHHhhc---C--ccceec------------CCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKR---C--HVANVG------------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~---~--~~~~v~------------~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
-.+|+|||.+|+|||||+|+|.. . ....+. ..+|+|.+.....+ +.++.|+||||.....
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 35899999999999999999973 2 112233 25688877554433 5689999999986431
Q ss_pred CCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhCc
Q 011507 322 SGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRGK 384 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g~ 384 (484)
.++..+++.++.+..+.|.... +...+.....+.+..+||+|... +.+..+..+....+.
T Consensus 90 ---~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 90 ---IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred ---HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2355567777665555553221 22334445556778889998763 455555555444443
No 149
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.24 E-value=2.2e-06 Score=77.33 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=37.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCee--eeeEEEEeCC---cEEEEecCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDK---NVKLLDCPGV 317 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T--r~~~~~~l~~---~i~liDTPGi 317 (484)
++|+|+|.||||||||+|+|.+.... ....|.++ .....+..+. .+.++||||.
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~ 59 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ 59 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCh
Confidence 47999999999999999999987652 22222222 2233344433 5789999995
No 150
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.24 E-value=1.5e-06 Score=78.35 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=49.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccccccCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
+|+++|.+|||||||+|+|.+.......++.|.+.....+. +..+.++||||..... ......+.+++.+..+.|+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~---~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYK-NVSFTVWDVGGQDKIR---PLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEEC-CEEEEEEECCCChhhH---HHHHHHhccCCEEEEEEEC
Confidence 48999999999999999999987555555555554332221 4478999999965321 1122344555554444444
No 151
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.24 E-value=1.6e-06 Score=78.18 Aligned_cols=76 Identities=24% Similarity=0.231 Sum_probs=48.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCc--cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccccccC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCH--VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~--~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~ 341 (484)
+|+++|.+|||||||+|+|.+.. .....++.|++..... .-+..+.++||||..... ......+.+++.+..+.
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFE-KGNLSFTAFDMSGQGKYR---GLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEE-ECCEEEEEEECCCCHhhH---HHHHHHHccCCEEEEEE
Confidence 48999999999999999999863 3445566665543211 123468899999975321 11223455665554444
Q ss_pred CC
Q 011507 342 DP 343 (484)
Q Consensus 342 d~ 343 (484)
|.
T Consensus 77 D~ 78 (162)
T cd04157 77 DS 78 (162)
T ss_pred eC
Confidence 43
No 152
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.23 E-value=1.9e-06 Score=82.13 Aligned_cols=80 Identities=24% Similarity=0.413 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecC-------CCCeeeeeEEEE------e
Q 011507 239 DCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGA-------TPGLTRSMQEVQ------L 305 (484)
Q Consensus 239 ~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~-------~pg~Tr~~~~~~------l 305 (484)
...|.+.+++.++.-+-..+ -.++|+|||..+.|||||||+|..+++...+. +|.||---...+ +
T Consensus 25 gyvGidtI~~Qm~~k~mk~G--F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTMKTG--FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccHHHHHHHHHHHHHhcc--CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 56799999998876544333 35899999999999999999999888755333 334432211111 1
Q ss_pred CCcEEEEecCCCccC
Q 011507 306 DKNVKLLDCPGVVML 320 (484)
Q Consensus 306 ~~~i~liDTPGi~~~ 320 (484)
.-++.++||||+...
T Consensus 103 klkltviDTPGfGDq 117 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQ 117 (336)
T ss_pred EEEEEEecCCCcccc
Confidence 236789999999876
No 153
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.23 E-value=2.5e-06 Score=77.10 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=37.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|+|.+..... ..++.|.+.....+.++ -.+.|+||||..
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHP 60 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccH
Confidence 479999999999999999999876422 22222222222223332 357899999974
No 154
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.23 E-value=5.8e-06 Score=73.21 Aligned_cols=53 Identities=28% Similarity=0.321 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+++.+...+..+|++|.|+|+.+|.+.....+...+ .+|+|+|+||+||.+.
T Consensus 51 ~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 51 RLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEA 103 (142)
T ss_pred HHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCc
Confidence 4566666678999999999999999887665443332 3699999999999864
No 155
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.22 E-value=2.6e-06 Score=84.48 Aligned_cols=117 Identities=19% Similarity=0.282 Sum_probs=67.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccc--eecCC-CCe--------------eeeeE--EEEe-CCcEEEEecCCCccCCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVA--NVGAT-PGL--------------TRSMQ--EVQL-DKNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~-pg~--------------Tr~~~--~~~l-~~~i~liDTPGi~~~~~~ 323 (484)
+|+++|.+|+|||||+|+|.....+ ..+.. .|+ |.... .+.. +..+.|+||||....
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f--- 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADF--- 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHH---
Confidence 4899999999999999999753211 11111 122 22211 1222 347899999998632
Q ss_pred ChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 324 ENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
......+++.++.+..+.|+... +...+.....+.+...|+++... +.++.+..+....|
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~ 145 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFG 145 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhC
Confidence 12344566777766655554321 11223344456677889988653 34556665655444
No 156
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.21 E-value=2.9e-06 Score=77.49 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=39.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
.++|+++|.||||||||+|++.+..... ..++.|++.....+..+. .+.|+||||..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~ 63 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchH
Confidence 3789999999999999999999876422 233344443334444433 57899999954
No 157
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.21 E-value=3.9e-06 Score=75.55 Aligned_cols=102 Identities=21% Similarity=0.079 Sum_probs=57.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
++|+++|.||||||||+|+|...... ....+++.... ....+ ..+.++||||..... ......+++++.+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---~~~~~~~~~~~~~ 75 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA---AIRDNYHRSGEGF 75 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh---HHHHHHhhcCCEE
Confidence 37999999999999999999976532 23333333211 12233 247889999965432 2233355555544
Q ss_pred cccCCCch---------hHHHHHhh---CCcchhhhhcCCCCCC
Q 011507 338 EKLDDPVG---------PVKEILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 338 ~~l~d~~~---------~v~~il~~---~~~~~l~~~~ki~~~~ 369 (484)
..+.|... ....++.. ...+.+.+.||+|...
T Consensus 76 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 76 LLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 33333211 11222322 2345666778877543
No 158
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.20 E-value=3.1e-06 Score=80.24 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=38.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
.+|+|+|.||||||||||.+.+...... ..|.++... ..+.++. .+.|+||||...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~-~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~ 61 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE-YIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQR 61 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc-cCCccccccceeEEEECCEEEEEEEEeCCCccc
Confidence 3799999999999999999998764322 244443222 1233333 467999999853
No 159
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.20 E-value=2.6e-06 Score=85.04 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=41.3
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecC--------CCCeee-eeEEE--EeC---CcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA--------TPGLTR-SMQEV--QLD---KNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~--------~pg~Tr-~~~~~--~l~---~~i~liDTPGi~~~ 320 (484)
.++|+|||.+|+|||||||+|.+..+...+. .+.++. ..... ..+ -.+.|+||||+...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~ 76 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN 76 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc
Confidence 4789999999999999999999988765533 223322 11112 222 25899999999765
No 160
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.18 E-value=5.7e-06 Score=75.23 Aligned_cols=93 Identities=24% Similarity=0.322 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCC-CCC-CHHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHHhcC---C
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPL-GTR-CIDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLREEL---P 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl-~~r-~~~le~~i~~~~---~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p 206 (484)
+...+++.+..+|++++|+|+.++. +.. ...+.+.+.... .++|+++|+||+||++......|...+.... +
T Consensus 68 ~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T cd01898 68 LGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKP 147 (170)
T ss_pred chHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCC
Confidence 3445556677899999999999872 211 112222232221 3689999999999998877777776554432 2
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
++ ..|+....|.+.|++.|.+
T Consensus 148 ~~-------------------------~~Sa~~~~gi~~l~~~i~~ 168 (170)
T cd01898 148 VF-------------------------PISALTGEGLDELLRKLAE 168 (170)
T ss_pred EE-------------------------EEecCCCCCHHHHHHHHHh
Confidence 22 2344567788888877654
No 161
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.18 E-value=3.7e-06 Score=76.43 Aligned_cols=56 Identities=23% Similarity=0.450 Sum_probs=38.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGV 317 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi 317 (484)
.++|+|+|.+|||||||+|+|........ ..+.|+.-....+.++. .+.|+||||-
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~ 62 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQ 62 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCCh
Confidence 37899999999999999999987654322 22223222233344443 6789999994
No 162
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.18 E-value=3.1e-06 Score=77.78 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=48.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
+.++|.++|.+|||||||+++|.........++-|.+. ..+.. +-.+.|+||||..... ......+++++.+..
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKIR---PLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--EEEEECCEEEEEEECCCCHHHH---HHHHHHhccCCEEEE
Confidence 35799999999999999999998655433333333332 22333 3468999999985321 112234566666555
Q ss_pred cCCC
Q 011507 340 LDDP 343 (484)
Q Consensus 340 l~d~ 343 (484)
+.|.
T Consensus 83 v~D~ 86 (168)
T cd04149 83 VVDS 86 (168)
T ss_pred EEeC
Confidence 5443
No 163
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.17 E-value=1.8e-05 Score=71.54 Aligned_cols=94 Identities=26% Similarity=0.498 Sum_probs=67.2
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH--HHHHHHHHHHHhcCCeEEEEccch
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR--ESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~--e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
.....+..+|+++.|+|+.+|.+.....+...+.. .++|+++|+||+|+.+. .....|.+.++..++....
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~----- 149 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDY----- 149 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccC-----
Confidence 34456789999999999999988766655555543 36899999999999877 5677788888776542110
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
......|+....|.+.+++.+..
T Consensus 150 --------------~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 150 --------------APIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------CceEEEeccCCCCHHHHHHHHHH
Confidence 01124566677888888877754
No 164
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.17 E-value=7.6e-06 Score=74.37 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=46.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
++|++||.||||||||++++.+...... .+..+.+.....+.++. .+.++||||-.... ......+++++.+.
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~~i 77 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ---TMHASYYHKAHACI 77 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh---hhhHHHhCCCCEEE
Confidence 4799999999999999999987653211 11222222222223332 46789999964321 12233566676666
Q ss_pred ccCCCc
Q 011507 339 KLDDPV 344 (484)
Q Consensus 339 ~l~d~~ 344 (484)
.+.|+.
T Consensus 78 ~v~d~~ 83 (161)
T cd04124 78 LVFDVT 83 (161)
T ss_pred EEEECC
Confidence 555543
No 165
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.15 E-value=6.8e-06 Score=90.11 Aligned_cols=104 Identities=20% Similarity=0.322 Sum_probs=64.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CC-cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DK-NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~-~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
++..|+++|.+|+|||||+|+|.+..++ .+..+|+|.+..... + +. .+.|+||||...... ........++.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~---~r~rga~~aDi 161 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTS---MRARGAKVTDI 161 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhh---HHHhhhccCCE
Confidence 5689999999999999999999988764 455678988865433 3 33 799999999753311 11122333333
Q ss_pred ccccCCCch---h-HHH---HHhhCCcchhhhhcCCCCC
Q 011507 337 IEKLDDPVG---P-VKE---ILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 337 i~~l~d~~~---~-v~~---il~~~~~~~l~~~~ki~~~ 368 (484)
+..+.|... + ..+ .+.....+.+...||+|..
T Consensus 162 aILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~ 200 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKP 200 (587)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccc
Confidence 333332211 1 111 2233344677778998864
No 166
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.15 E-value=4.2e-06 Score=75.60 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=37.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|+|.+..... ..++.|+......+.++. .+.|+||||..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~ 60 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQE 60 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchH
Confidence 479999999999999999999776422 222233222222333332 57899999963
No 167
>PLN03127 Elongation factor Tu; Provisional
Probab=98.15 E-value=6.7e-06 Score=87.47 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=65.6
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC------ccce---------ecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC------HVAN---------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~------~~~~---------v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+|+|||||+++|.+. .... ....+|+|.+.....+ +.++.|+||||+..-
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f- 137 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY- 137 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch-
Confidence 46799999999999999999999732 1011 1123799998776655 347899999998421
Q ss_pred CCChHHHHHHhccccccccCCCch----h---HHHHHhhCCcch-hhhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG----P---VKEILNRCPANL-LISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~----~---v~~il~~~~~~~-l~~~~ki~~~~ 369 (484)
-......+..++.+..+.|... . ...++.....+. +..+||+|...
T Consensus 138 --~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 138 --VKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred --HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC
Confidence 1112223334554444444321 1 123344445454 56789998754
No 168
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.14 E-value=3.6e-06 Score=78.43 Aligned_cols=56 Identities=29% Similarity=0.356 Sum_probs=40.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~ 318 (484)
..++|+++|.+|||||||+|+|.+.......++.+.+. ..+.+ +..+.++||||..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCH
Confidence 46889999999999999999999876544433333332 23333 3467899999953
No 169
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.14 E-value=9.6e-06 Score=80.58 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=66.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc--cceecCC-----CCee-e-------------eeE--EEEe-CCcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH--VANVGAT-----PGLT-R-------------SMQ--EVQL-DKNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~--~~~v~~~-----pg~T-r-------------~~~--~~~l-~~~i~liDTPGi~ 318 (484)
-+|+|+|.+|+|||||+|+|+..- +...|.. .|.| . ... .+.. +..+.|+||||..
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 369999999999999999998532 1111111 1211 1 111 1222 4578999999975
Q ss_pred cCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
... ......++.++.+..+.|.... +..++.....+.+...|+++... +....+..+....|
T Consensus 83 df~---~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 83 DFS---EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHH---HHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 321 2344567777766655554321 12223334456777789988543 33444555554444
No 170
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.14 E-value=4.3e-06 Score=78.23 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=37.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+|+|.||||||||||++.+.+.. ...++.|.+.....+.++. .+.++||||.-
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 61 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCch
Confidence 37999999999999999999987642 1223333333233344443 35689999964
No 171
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.14 E-value=5.2e-06 Score=75.61 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=37.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~---~~i~liDTPGi~ 318 (484)
++|+++|.+|||||||+|+|.+.+.... .++-|++-....+..+ -.+.|+||||..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~ 61 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQE 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChH
Confidence 5899999999999999999998775322 1222322222233222 257899999964
No 172
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.13 E-value=5.2e-06 Score=74.46 Aligned_cols=54 Identities=26% Similarity=0.326 Sum_probs=36.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.||||||||+|+|.+.... ...+.++... ..+.++. .+.++||||.-
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 60 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 60 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCc--CCcCCcchheEEEEEEECCEEEEEEEEECCCCc
Confidence 57999999999999999999987642 2223333221 1223333 36689999964
No 173
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.13 E-value=2.6e-06 Score=77.42 Aligned_cols=76 Identities=21% Similarity=0.284 Sum_probs=44.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccc---eecCCCCeeeeeE--EEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVA---NVGATPGLTRSMQ--EVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~---~v~~~pg~Tr~~~--~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
+|+|+|.+|||||||+|.|.+.... .....+..|.... .+.. +..+.++||||...-. ......+.+++.+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR---SLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH---HHHHHHhCCCCEE
Confidence 4899999999999999999875421 0111223333222 2333 3578999999975321 1122345555554
Q ss_pred cccCC
Q 011507 338 EKLDD 342 (484)
Q Consensus 338 ~~l~d 342 (484)
..+.|
T Consensus 78 v~vvd 82 (167)
T cd04160 78 IYVID 82 (167)
T ss_pred EEEEE
Confidence 44444
No 174
>PRK12735 elongation factor Tu; Reviewed
Probab=98.13 E-value=3.7e-06 Score=88.27 Aligned_cols=107 Identities=17% Similarity=0.273 Sum_probs=63.1
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC-------ccce--------ecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC-------HVAN--------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~-------~~~~--------v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+|+|||||+|+|++. +... .....|+|.+.....+ +.++.|+||||...-
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f- 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY- 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH-
Confidence 46799999999999999999999862 1100 1115688888765554 347899999997321
Q ss_pred CCChHHHHHHhccccccccCCCc----hhHH---HHHhhCCcchh-hhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPV----GPVK---EILNRCPANLL-ISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~----~~v~---~il~~~~~~~l-~~~~ki~~~~ 369 (484)
.......+..++.+..+.|.. .... .++.....+.+ ..+||+|...
T Consensus 89 --~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 89 --VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc
Confidence 112223344444443333322 1111 22333344544 4679998753
No 175
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.13 E-value=5.5e-06 Score=75.41 Aligned_cols=56 Identities=30% Similarity=0.407 Sum_probs=36.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|+|.+...... .+..|.+-....+.++. .+.++||||..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQE 60 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChH
Confidence 4799999999999999999998764211 12223322222233332 46689999963
No 176
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.12 E-value=8.4e-06 Score=91.75 Aligned_cols=113 Identities=18% Similarity=0.304 Sum_probs=70.1
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++..|+|+|.+|+|||||+++|++..+. .+..+|+|.+...+.+ +..+.|+||||..... ......+..++.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~---~m~~rga~~aDi 363 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFT---AMRARGAQVTDI 363 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccch---hHHHhhhhhCCE
Confidence 36789999999999999999999987764 5567888887665433 4578999999975331 122223344443
Q ss_pred ccccCCCch---h-HH---HHHhhCCcchhhhhcCCCCCC-CHHHHHH
Q 011507 337 IEKLDDPVG---P-VK---EILNRCPANLLISLYKLPSFD-SVDDFLQ 376 (484)
Q Consensus 337 i~~l~d~~~---~-v~---~il~~~~~~~l~~~~ki~~~~-~~~e~l~ 376 (484)
+..+.|... + .. ..+.....+.+...|++|... +.+.+..
T Consensus 364 aILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~ 411 (787)
T PRK05306 364 VVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQ 411 (787)
T ss_pred EEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHH
Confidence 333333221 1 11 122334456777889988643 3344433
No 177
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.10 E-value=1.1e-05 Score=78.17 Aligned_cols=104 Identities=22% Similarity=0.275 Sum_probs=61.3
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
...+..|+|+|.||+|||||+|+|.+.. ...++...|+.. . ...-+.++.++||||.+ ......+..++.+
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~-i-~~~~~~~i~~vDtPg~~------~~~l~~ak~aDvV 107 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPIT-V-VTGKKRRLTFIECPNDI------NAMIDIAKVADLV 107 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEE-E-EecCCceEEEEeCCchH------HHHHHHHHhcCEE
Confidence 3457889999999999999999999762 233444555421 1 11235678999999864 2223344555555
Q ss_pred cccCCCchh----HHHH---HhhCCcc-hhhhhcCCCCCCC
Q 011507 338 EKLDDPVGP----VKEI---LNRCPAN-LLISLYKLPSFDS 370 (484)
Q Consensus 338 ~~l~d~~~~----v~~i---l~~~~~~-~l~~~~ki~~~~~ 370 (484)
..+.|.... ...+ +...+.+ .+.+++++|.+..
T Consensus 108 llviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 108 LLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK 148 (225)
T ss_pred EEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc
Confidence 555543221 1222 2222333 3447788886643
No 178
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.10 E-value=7.2e-06 Score=74.55 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=37.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~---~~i~liDTPGi~ 318 (484)
++|+|+|.||||||||+|++.+..... ...|.++.. ...+..+ -.+.|+||||..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 62 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 62 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 689999999999999999999776422 233333322 2223333 257899999953
No 179
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.10 E-value=2.4e-05 Score=70.34 Aligned_cols=93 Identities=20% Similarity=0.209 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhc----C
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREE----L 205 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~----~ 205 (484)
.|...+...+..+|+||+|+|+++.+..........+... +.+|+|+|+||+||.+... ...+.+++... .
T Consensus 63 ~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (164)
T cd04171 63 KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELL-GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADA 141 (164)
T ss_pred HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCC
Confidence 4556667778899999999999985443332322233222 3458999999999987642 33444555432 2
Q ss_pred CeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 206 p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
+.+ ..|+..+.|.+.|++.+..
T Consensus 142 ~~~-------------------------~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 142 PIF-------------------------PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cEE-------------------------EEeCCCCcCHHHHHHHHhh
Confidence 222 3445667788888877753
No 180
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.10 E-value=8.2e-06 Score=85.80 Aligned_cols=158 Identities=23% Similarity=0.251 Sum_probs=98.7
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f 210 (484)
....|.++..+..++--++..|+|-.|-..+..+.+-..+ ..+..++++||+||.|.+..--....+....---.+
T Consensus 96 ~~~~y~k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~v 171 (572)
T KOG1249|consen 96 VPGEYKKEKSEKQENPALARKVVDLSDEPCSIDPLLTNDV----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMI 171 (572)
T ss_pred ChhhhhhhhhhhhhcccceEEeeecccCccccccchhhcc----cCCceEeeccccccccccccchHHHHHHhhccccee
Confidence 4455666666666774567777888887777777776665 345689999999999987633333333222110111
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccc--
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVA-- 288 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~-- 288 (484)
++...+ |+. ....-.+...+++..+.|+++|+-.|..... ..+.+-.+|..||||||++|+|+....|
T Consensus 172 k~~~~e---n~~--p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~d-----f~Gdf~lvg~tnvgks~~fn~ll~sD~c~~ 241 (572)
T KOG1249|consen 172 KAGGGE---NLN--PDFDFDHVDLIRAKTGYGIEELIVMLVDIVD-----FRGDFYLVGATNVGKSTLFNALLESDLCSV 241 (572)
T ss_pred eccccc---CCC--cccchhhhhhhhhhhcccHHHHHHHhhheee-----ccCceeeeeecccchhhHHHHHhhhccccc
Confidence 111100 000 0000012234566778999999988865332 3456889999999999999999987655
Q ss_pred ---------eecCCCCeeeeeEE
Q 011507 289 ---------NVGATPGLTRSMQE 302 (484)
Q Consensus 289 ---------~v~~~pg~Tr~~~~ 302 (484)
.+++-||||..+-.
T Consensus 242 ~~p~lVd~aT~~dwpgTtlsllk 264 (572)
T KOG1249|consen 242 NAPKLVDRATISDWPGTTLSLLK 264 (572)
T ss_pred cccceeeeeecccCCccccchhh
Confidence 35677888876443
No 181
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.09 E-value=5.4e-06 Score=75.00 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
+|+|+|.||||||||+|+|.+..... ..++++.+. ..+.++. .+.++||||...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 60 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVD--DYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEE 60 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCc--ccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 79999999999999999999876422 222333222 1223332 467899999654
No 182
>PRK00049 elongation factor Tu; Reviewed
Probab=98.09 E-value=6.2e-06 Score=86.54 Aligned_cols=107 Identities=19% Similarity=0.286 Sum_probs=66.5
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCcc------cee---------cCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHV------ANV---------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~------~~v---------~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+|+|||||+++|++.-. ... ...+|+|.+.....+ +.++.|+||||...-
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f- 88 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH-
Confidence 4579999999999999999999996310 001 115799988776555 457899999997421
Q ss_pred CCChHHHHHHhccccccccCCCch---h----HHHHHhhCCcchh-hhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLL-ISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~---~----v~~il~~~~~~~l-~~~~ki~~~~ 369 (484)
.......+..++.+..+.|... + ...++.....+.+ ..+||+|...
T Consensus 89 --~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 89 --VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred --HHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1112233455555544544322 1 1223444444554 4679998754
No 183
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.09 E-value=4.3e-06 Score=77.15 Aligned_cols=54 Identities=24% Similarity=0.325 Sum_probs=36.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEe---CCcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQL---DKNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l---~~~i~liDTPGi~ 318 (484)
.+|+|+|.||||||||+|++.+... +...++++.. ...+.+ +..+.|+||||..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~ 60 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD 60 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC--ccccCcchhhhEEEEEEECCEEEEEEEEECCChH
Confidence 5799999999999999999997763 2222233221 111222 2357899999974
No 184
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.07 E-value=6.5e-06 Score=74.23 Aligned_cols=54 Identities=28% Similarity=0.359 Sum_probs=35.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeC-----CcEEEEecCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD-----KNVKLLDCPGV 317 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~-----~~i~liDTPGi 317 (484)
++|+++|.+|||||||+|+|.+..... ...|.++... ..+.+. -.+.|+||||.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 61 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCch
Confidence 479999999999999999999865321 1123222222 223332 25789999994
No 185
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.07 E-value=2.9e-05 Score=71.53 Aligned_cols=113 Identities=22% Similarity=0.313 Sum_probs=69.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
+.......+..+|+++.|+|+.++.......+...+.. .++|+++|+||+|+++.+.+.....++++.+.........
T Consensus 75 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (189)
T cd00881 75 FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchh
Confidence 44556677789999999999999876554444444443 4799999999999997555444444444432211110000
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+. ... ........+.|+..+.|.+.++..|..+++
T Consensus 153 ~~-----~~~-~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 153 EE-----GTR-NGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hh-----hcc-cCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 00 000 000112345677888999999999887654
No 186
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.05 E-value=2.5e-06 Score=84.70 Aligned_cols=85 Identities=20% Similarity=0.162 Sum_probs=53.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCC----eeeeeEEEEeCCcEEEEecCCCccCCCCC--hHH---HHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG----LTRSMQEVQLDKNVKLLDCPGVVMLKSGE--NDA---SIAL 331 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg----~Tr~~~~~~l~~~i~liDTPGi~~~~~~~--~~~---~~~L 331 (484)
....|+||||+|+|||||||+|++..+. ..+.-+ +|++.-...-+..+.|.||-|++..-+.. ..+ ...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~-p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeV 255 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY-PNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEV 255 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC-ccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHH
Confidence 3578999999999999999999965432 112223 34433333345678899999998764321 112 2234
Q ss_pred hccccccccCCCchh
Q 011507 332 RNCKRIEKLDDPVGP 346 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~ 346 (484)
..++.+.++.|...|
T Consensus 256 aeadlllHvvDiShP 270 (410)
T KOG0410|consen 256 AEADLLLHVVDISHP 270 (410)
T ss_pred hhcceEEEEeecCCc
Confidence 456666677765544
No 187
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.05 E-value=6.1e-06 Score=90.38 Aligned_cols=103 Identities=20% Similarity=0.305 Sum_probs=60.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCC-eeeeeEEEE--eC-------------------CcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEVQ--LD-------------------KNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg-~Tr~~~~~~--l~-------------------~~i~liDTPGi~ 318 (484)
++..|+|+|.+|+|||||||+|++..+. ...|| +|++..... .+ .++.|+||||..
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e 80 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHE 80 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcH
Confidence 3567999999999999999999998652 33444 666422211 10 248899999964
Q ss_pred cCCCCChHHHHHHhccccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
... ......++.++.+..+.|... + ...++.....+.+...|++|..
T Consensus 81 ~f~---~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~ 134 (590)
T TIGR00491 81 AFT---NLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRI 134 (590)
T ss_pred hHH---HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 221 111223455555544444321 1 1123344455667778888764
No 188
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.05 E-value=1.3e-05 Score=72.86 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=47.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
+|+|||.|||||||||+++..... ++..+.++.. ...+.++. .+.|+||||...... ......+++++.+.
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~--~~~~~~~~~~d~~i 76 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT--EQLERSIRWADGFV 76 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCccccc--chHHHHHHhCCEEE
Confidence 489999999999999999986543 3344444322 22233433 477999999874211 12334566776665
Q ss_pred ccCCC
Q 011507 339 KLDDP 343 (484)
Q Consensus 339 ~l~d~ 343 (484)
.+.|.
T Consensus 77 ~v~d~ 81 (165)
T cd04146 77 LVYSI 81 (165)
T ss_pred EEEEC
Confidence 55554
No 189
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.05 E-value=6.5e-06 Score=75.50 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=49.5
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d 342 (484)
+|+++|.+|||||||+|.|.+.......++.|.+.. .+.. +..+.++||||-.... ......+++++.+..+.|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~---~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFR---GIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcHHHH---HHHHHHHcCCCEEEEEEE
Confidence 489999999999999999998754455666676543 2333 3468899999953221 112234566666555544
Q ss_pred C
Q 011507 343 P 343 (484)
Q Consensus 343 ~ 343 (484)
.
T Consensus 76 ~ 76 (167)
T cd04161 76 S 76 (167)
T ss_pred C
Confidence 3
No 190
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.05 E-value=8.7e-06 Score=75.96 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=49.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
++|+|+|.+|||||||||+|.+..... ..++.|.+.....+.++. .+.++||||..... ......+.+++.+.
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~---~~~~~~~~~~d~ii 77 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR---SLNNSYYRGAHGYL 77 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHH---hhHHHHccCCCEEE
Confidence 479999999999999999999876532 334444444334444433 46789999954221 12233456666655
Q ss_pred ccCCC
Q 011507 339 KLDDP 343 (484)
Q Consensus 339 ~l~d~ 343 (484)
.+.|.
T Consensus 78 lv~d~ 82 (188)
T cd04125 78 LVYDV 82 (188)
T ss_pred EEEEC
Confidence 44443
No 191
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.05 E-value=2.9e-05 Score=70.77 Aligned_cols=93 Identities=22% Similarity=0.337 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEE
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVA 209 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~ 209 (484)
..+++++...+..+|+||.|+|+.++.+.....+..+ ..++|+++++||+||.+. ....+.+++.+.. |.+.
T Consensus 52 ~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~~~~p~~~ 126 (158)
T PRK15467 52 PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA-DVAATRKLLLETGFEEPIFE 126 (158)
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcCCCCCEEE
Confidence 3467777778899999999999999876655544432 246899999999999543 2344444443332 3333
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+|+.++.|.+.|++.|.....
T Consensus 127 -------------------------~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 127 -------------------------LNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred -------------------------EECCCccCHHHHHHHHHHhch
Confidence 345677889999988876543
No 192
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.05 E-value=5.5e-06 Score=75.62 Aligned_cols=55 Identities=25% Similarity=0.264 Sum_probs=36.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCe----eeeeEEEEeCCcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL----TRSMQEVQLDKNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~----Tr~~~~~~l~~~i~liDTPGi~~ 319 (484)
++|+|+|.+|||||||+|+|.+.+... ..|.+ |.........-.+.++||||...
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 59 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPE--NVPRVLPEITIPADVTPERVPTTIVDTSSRPQ 59 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCc--cCCCcccceEeeeeecCCeEEEEEEeCCCchh
Confidence 379999999999999999999876432 23332 22211111123578999999753
No 193
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.04 E-value=4.5e-06 Score=73.94 Aligned_cols=45 Identities=22% Similarity=0.385 Sum_probs=32.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
+|++||.||||||||+|+|.+.... .+. |... .... .++||||..
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~~---~~~~--~~iDt~G~~ 46 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQAV---EYND--GAIDTPGEY 46 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ceeE---EEcC--eeecCchhh
Confidence 6999999999999999999987642 111 2211 1222 689999973
No 194
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.04 E-value=9.9e-06 Score=73.65 Aligned_cols=57 Identities=25% Similarity=0.299 Sum_probs=37.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee-eEEEEe---CCcEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~-~~~~~l---~~~i~liDTPGi~~~ 320 (484)
++|+++|.+|||||||+|+|.+.... ....|..... ...+.. .-.+.++||||....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~ 61 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEY 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccc
Confidence 47999999999999999999987641 2222222111 111122 225889999997643
No 195
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.03 E-value=8.2e-06 Score=72.50 Aligned_cols=53 Identities=25% Similarity=0.429 Sum_probs=35.8
Q ss_pred EEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCc
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVV 318 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~ 318 (484)
|+++|.+|||||||+|+|.+.... ....|.+......+.. ...+.++||||..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 55 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQP 55 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEEEEECCEEEEEEECCCCH
Confidence 799999999999999999987542 2223333222222222 2357899999963
No 196
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.03 E-value=3.2e-05 Score=74.88 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhh--hcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC----
Q 011507 133 RAFYKELVKVIE--VSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELP---- 206 (484)
Q Consensus 133 k~~~~el~kvie--~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p---- 206 (484)
+.|.++....+. .+|+++.|+||+.++......+..++... +.|+|+|+||+|+++.+.+..-+..+.+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~~g~ 172 (224)
T cd04165 95 ERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALAL--NIPVFVVVTKIDLAPANILQETLKDLKRILKVPGV 172 (224)
T ss_pred HHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEECccccCHHHHHHHHHHHHHHhcCCCc
Confidence 456677777665 79999999999998765555555665543 6899999999999987665555554444321
Q ss_pred -eEEEEccchhhhhhcCC-CccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 207 -AVAFKCSTQEQRANLGW-KSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 207 -~v~f~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.+++...+..+...... ...........+|+.++.|.+.|.++|..
T Consensus 173 ~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 173 RKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred cccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 11111111100000000 00000112345688899999999998865
No 197
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.03 E-value=1.2e-05 Score=75.06 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=47.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
+.++|.++|.+|||||||++.+.........++.|.+.. .+.. +-.+.|+||||..... ......+++++.+..
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~--~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVE--TVEYKNLKFTMWDVGGQDKLR---PLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceE--EEEECCEEEEEEECCCCHhHH---HHHHHHhcCCCEEEE
Confidence 468999999999999999999975544333333333222 2222 3468899999974221 112234566665554
Q ss_pred cCCC
Q 011507 340 LDDP 343 (484)
Q Consensus 340 l~d~ 343 (484)
+.|.
T Consensus 91 v~D~ 94 (182)
T PTZ00133 91 VVDS 94 (182)
T ss_pred EEeC
Confidence 4443
No 198
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.02 E-value=1.1e-05 Score=76.33 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=47.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.++|+|||.+|||||||+|++.+.... ...++.|+.-....+.++. .+.|+||||-.... ......+++++.+
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~---~~~~~~~~~a~~i 82 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFR---TITSTYYRGTHGV 82 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHH---HHHHHHhCCCcEE
Confidence 578999999999999999999987642 1233334332223333332 57899999964321 1122344555544
Q ss_pred cccCCC
Q 011507 338 EKLDDP 343 (484)
Q Consensus 338 ~~l~d~ 343 (484)
..+.|+
T Consensus 83 ilv~D~ 88 (199)
T cd04110 83 IVVYDV 88 (199)
T ss_pred EEEEEC
Confidence 444443
No 199
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.02 E-value=1.2e-05 Score=73.46 Aligned_cols=57 Identities=25% Similarity=0.297 Sum_probs=37.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
.++|+++|.||||||||+|++.+.+.... .++.|+.-....+.++. .+.|+||||-.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~ 65 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChH
Confidence 47899999999999999999997664221 22223222222333332 46789999953
No 200
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.02 E-value=5.4e-06 Score=91.20 Aligned_cols=78 Identities=31% Similarity=0.369 Sum_probs=50.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc--------eec------CCCCeeeeeEEEEe-----C---CcEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA--------NVG------ATPGLTRSMQEVQL-----D---KNVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~--------~v~------~~pg~Tr~~~~~~l-----~---~~i~liDTPGi~~~ 320 (484)
.+++|||.+|+|||||+++|.....+ .+. ...|+|.....+.+ + ..+.|+||||....
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 47999999999999999999864211 111 22477776554332 2 35789999999754
Q ss_pred CCCChHHHHHHhccccccccCCC
Q 011507 321 KSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
. ......++.|+.+..+.|.
T Consensus 84 ~---~~v~~~l~~aD~aILVvDa 103 (595)
T TIGR01393 84 S---YEVSRSLAACEGALLLVDA 103 (595)
T ss_pred H---HHHHHHHHhCCEEEEEecC
Confidence 2 2344566777665555443
No 201
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.02 E-value=1.1e-05 Score=73.52 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=36.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce--ecCCCCeeeeeEEEEeC---CcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~--v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~ 319 (484)
++|+++|.+|||||||||++.+..... ....+.+++ ..+..+ ..+.++||||...
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~ 61 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR--QVISCSKNICTLQITDTTGSHQ 61 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEE--EEEEECCEEEEEEEEECCCCCc
Confidence 579999999999999999999775321 111122222 222222 2577999999753
No 202
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.02 E-value=9.3e-06 Score=74.18 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=36.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeC---CcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~---~~i~liDTPGi~~ 319 (484)
++|++||.||||||||+|++.+.... .....++.. ...+.++ ..+.++||||...
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 61 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFI--ESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQ 61 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCcchheEEEEEEECCEEEEEEEEeCCCccc
Confidence 57999999999999999999976532 222222221 1222333 2568999999653
No 203
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.01 E-value=1.1e-05 Score=72.81 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=37.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~ 319 (484)
++|+|+|.||||||||+|++...... ...+.++.. ...+.++. .+.|+||||...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQ 61 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccc
Confidence 58999999999999999999976532 223333322 12233333 467899999743
No 204
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.01 E-value=2e-05 Score=82.25 Aligned_cols=100 Identities=25% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCCcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 011507 126 KNRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (484)
Q Consensus 126 ~~~~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~ 205 (484)
...+...+.=.+..++.++.||+||+|+|++.|+...+..+...+ ..++|+++|+||+||+++...... .+....
T Consensus 277 et~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~---~~~~~~i~v~NK~DL~~~~~~~~~--~~~~~~ 351 (454)
T COG0486 277 ETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELL---PKKKPIIVVLNKADLVSKIELESE--KLANGD 351 (454)
T ss_pred cCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhc---ccCCCEEEEEechhcccccccchh--hccCCC
Confidence 445556666677889999999999999999999877776665522 257999999999999987543221 112222
Q ss_pred CeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 206 p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+.+. +|+.++.|.+.|.+.|.++..
T Consensus 352 ~~i~-------------------------iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 352 AIIS-------------------------ISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred ceEE-------------------------EEecCccCHHHHHHHHHHHHh
Confidence 3333 445677899999999988765
No 205
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.01 E-value=1.3e-05 Score=72.91 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=37.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.+|||||||+|++.+...... .++.|.+-....+.++. .+.|+||||..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 62 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 6899999999999999999997764221 11222222222333432 57899999964
No 206
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.00 E-value=1e-05 Score=72.62 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=36.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~ 318 (484)
.+|+++|.+|||||||+|+|.+..... ...+.++... ..+.... .+.++||||-.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 60 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchH
Confidence 379999999999999999999876532 2222222222 1233222 57899999954
No 207
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.00 E-value=6.5e-06 Score=73.69 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=46.6
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC---CcEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
+|+|+|.+|||||||+|+|.+.. .++..+.+|.+... +..+ ..+.++||||..... ......+..++.+.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~---~~~~~~~~~~~~~i 75 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFS---AMRDLYIRQGDGFI 75 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHHhcCCEEE
Confidence 48999999999999999999776 34445555554333 2233 257899999975421 12223455555544
Q ss_pred ccCC
Q 011507 339 KLDD 342 (484)
Q Consensus 339 ~l~d 342 (484)
.+.|
T Consensus 76 ~v~d 79 (160)
T cd00876 76 LVYS 79 (160)
T ss_pred EEEE
Confidence 4433
No 208
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=97.99 E-value=2.2e-05 Score=80.30 Aligned_cols=96 Identities=26% Similarity=0.339 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HH---HHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-ID---MEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~---le~~i~~~---~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~ 207 (484)
+-..+.+-++.+|++|+|+|+.++-.+.. .. +.+.+... ..++|+|+|+||+||.+.+....+.+++.+.+..
T Consensus 225 Lg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~ 304 (329)
T TIGR02729 225 LGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGK 304 (329)
T ss_pred HHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCC
Confidence 44456667889999999999987522111 11 22222221 1368999999999999887777777777665431
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
-.| .+|+....|.+.|++.|...
T Consensus 305 ~vi-----------------------~iSAktg~GI~eL~~~I~~~ 327 (329)
T TIGR02729 305 PVF-----------------------PISALTGEGLDELLYALAEL 327 (329)
T ss_pred cEE-----------------------EEEccCCcCHHHHHHHHHHH
Confidence 111 34556778899998887654
No 209
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.98 E-value=3e-06 Score=81.70 Aligned_cols=84 Identities=27% Similarity=0.416 Sum_probs=60.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHHhccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRNCK 335 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~----~~~~~~L~~~~ 335 (484)
.+|++||+|.|||||+++.|.+.. +.|..+-|+|-......+ +..+.|+|.|||+....+. .++..+-|.|.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcn 138 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCN 138 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCC-CccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeeccc
Confidence 489999999999999999999876 467777787755443322 5689999999999875432 23334456677
Q ss_pred cccccCCCchhH
Q 011507 336 RIEKLDDPVGPV 347 (484)
Q Consensus 336 ~i~~l~d~~~~v 347 (484)
.+..+.|...|+
T Consensus 139 li~~vld~~kp~ 150 (358)
T KOG1487|consen 139 LIFIVLDVLKPL 150 (358)
T ss_pred EEEEEeeccCcc
Confidence 666566655554
No 210
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.96 E-value=1.6e-05 Score=72.74 Aligned_cols=55 Identities=20% Similarity=0.139 Sum_probs=36.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
++|+++|.+|||||||+|++.+.... .....++... ..+.++. .+.++||||-..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQED 60 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc
Confidence 47999999999999999999977642 1122222211 1233333 367899999654
No 211
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.96 E-value=1.1e-05 Score=75.63 Aligned_cols=53 Identities=25% Similarity=0.278 Sum_probs=35.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~ 318 (484)
+|+|+|.+|||||||+|+|...... ...++++.. ...+.++. .+.|+||||..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 58 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV--ETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQE 58 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchHhhEEEEEEECCEEEEEEEEECCCch
Confidence 4899999999999999999876542 223333321 11223332 37789999964
No 212
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.94 E-value=1.5e-05 Score=72.42 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=45.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~ 341 (484)
++|+++|.+|||||||+++|....... ..|.+......+.. +-.+.|+||||..... ......+++++.+..+.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~--~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIPTIGFNVETVEYKNISFTVWDVGGQDKIR---PLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc--cCCCCCcceEEEEECCEEEEEEECCCCHhHH---HHHHHHhcCCCEEEEEE
Confidence 479999999999999999996544322 23322111222222 3468899999974221 11223456666655554
Q ss_pred CC
Q 011507 342 DP 343 (484)
Q Consensus 342 d~ 343 (484)
|.
T Consensus 76 D~ 77 (159)
T cd04150 76 DS 77 (159)
T ss_pred eC
Confidence 43
No 213
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.93 E-value=1e-05 Score=90.42 Aligned_cols=104 Identities=14% Similarity=0.302 Sum_probs=64.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-----CCcEEEEecCCCccCCCCChHHHHHHhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-----DKNVKLLDCPGVVMLKSGENDASIALRN 333 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-----~~~i~liDTPGi~~~~~~~~~~~~~L~~ 333 (484)
++..|+|+|++|+|||||+|+|++...+ .+..+|+|.+...+. + +..+.|+||||..... ......+..
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~-~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~---~mr~rg~~~ 318 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIA-QKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS---SMRSRGANV 318 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCc-cccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH---HHHHHHHHH
Confidence 5689999999999999999999987653 355578887644322 1 2578999999964221 112234455
Q ss_pred cccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 334 CKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 334 ~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
++.+..+.|... + ....+.....+.+...|++|..
T Consensus 319 aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~ 360 (742)
T CHL00189 319 TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKA 360 (742)
T ss_pred CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCcc
Confidence 555544443221 1 1112333345677778998864
No 214
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=97.93 E-value=7.2e-05 Score=70.13 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhc-----
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREE----- 204 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~----- 204 (484)
.|++++...+..+|+++.|+|+++...........+.. . .++|+++|+||+|++..+. ...+.+++...
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 157 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-I-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR 157 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-H-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57788888888999999999999864322211112222 2 2579999999999986543 33344433322
Q ss_pred CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 205 ~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
+..+.+ .++|+..+.|.+.|+..|...
T Consensus 158 ~~~~~v----------------------i~iSa~~g~gi~~L~~~l~~~ 184 (192)
T cd01889 158 FKNSPI----------------------IPVSAKPGGGEAELGKDLNNL 184 (192)
T ss_pred cCCCCE----------------------EEEeccCCCCHHHHHHHHHhc
Confidence 111111 245567788999999888764
No 215
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.93 E-value=1.5e-05 Score=79.74 Aligned_cols=59 Identities=24% Similarity=0.406 Sum_probs=35.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceec-CCC-------Cee-eeeEEEEe-----CCcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVG-ATP-------GLT-RSMQEVQL-----DKNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~-~~p-------g~T-r~~~~~~l-----~~~i~liDTPGi~~~ 320 (484)
.++|+|||.+|+|||||||+|.+..+.... ..+ .++ -....+.+ .-++.|+||||+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 478999999999999999999998754442 111 111 11111222 226789999999764
No 216
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.93 E-value=2.2e-05 Score=71.85 Aligned_cols=57 Identities=30% Similarity=0.356 Sum_probs=37.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
.++|+++|.+|||||||||++.+.... ...++.|..-....+.++. .+.++||||..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 62 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChH
Confidence 368999999999999999999876532 1122222222222233333 57899999964
No 217
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.92 E-value=7.6e-05 Score=79.58 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCC-CCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDP-LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdP-l~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~ 211 (484)
+.|.+++...+..+|+++.|+||..+ ..........++. ..+-+++|+|+||+||++.+.+..-...++..+.....
T Consensus 128 ~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~-~lgi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~- 205 (460)
T PTZ00327 128 DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVE-IMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIA- 205 (460)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHH-HcCCCcEEEEEecccccCHHHHHHHHHHHHHHHHhhcc-
Confidence 57889999999999999999999985 2222222122222 22356789999999999866543333333321100000
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
......++|+..+.|.+.|++.|.++.+
T Consensus 206 ----------------~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 206 ----------------DNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred ----------------CCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 0001235566778899999999997665
No 218
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.92 E-value=4.3e-05 Score=73.86 Aligned_cols=102 Identities=21% Similarity=0.318 Sum_probs=59.8
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeee---------------eeE--EEEe-----------CCcEEEEecC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---------------SMQ--EVQL-----------DKNVKLLDCP 315 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr---------------~~~--~~~l-----------~~~i~liDTP 315 (484)
+|+|+|.++.|||||+++|....-.......|.++ ... ...+ +..+.|+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 69999999999999999998543211111223222 111 1111 2357899999
Q ss_pred CCccCCCCChHHHHHHhccccccccCCCch----hHHHHHh---hCCcchhhhhcCCCCC
Q 011507 316 GVVMLKSGENDASIALRNCKRIEKLDDPVG----PVKEILN---RCPANLLISLYKLPSF 368 (484)
Q Consensus 316 Gi~~~~~~~~~~~~~L~~~~~i~~l~d~~~----~v~~il~---~~~~~~l~~~~ki~~~ 368 (484)
|..... ..+...++.++.+..+.|... ....++. ....+.+...||+|..
T Consensus 82 G~~~f~---~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFS---SEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccH---HHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 997542 345566777776655554332 1122222 2234567778999864
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.92 E-value=1.9e-05 Score=86.77 Aligned_cols=102 Identities=19% Similarity=0.286 Sum_probs=58.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC-CeeeeeEEEE--eC-------------------CcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQEVQ--LD-------------------KNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p-g~Tr~~~~~~--l~-------------------~~i~liDTPGi~ 318 (484)
++..|+++|.+|+|||||+|+|.+..+ +...| |.|.+..... .+ ..+.|+||||..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 467899999999999999999998754 33344 3555432111 00 137899999975
Q ss_pred cCCCCChHHHHHHhccccccccCCCch---h----HHHHHhhCCcchhhhhcCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPS 367 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~ 367 (484)
.... .....+..++.+..+.|... + ...++.....+.+...|++|.
T Consensus 83 ~f~~---~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 83 AFTN---LRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred HHHH---HHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 4311 11123344554444444321 1 112333344556777788875
No 220
>PLN03110 Rab GTPase; Provisional
Probab=97.92 E-value=2.1e-05 Score=75.43 Aligned_cols=80 Identities=19% Similarity=0.237 Sum_probs=50.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|++||.+||||||||++|.+.... ...++.|++.....+.++. .+.|+||||-.... ......+++++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~---~~~~~~~~~~~~ 87 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYR---AITSAYYRGAVG 87 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHH---HHHHHHhCCCCE
Confidence 3478999999999999999999987643 2223334443334444443 67889999964321 122345566665
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 88 ~ilv~d~ 94 (216)
T PLN03110 88 ALLVYDI 94 (216)
T ss_pred EEEEEEC
Confidence 5555443
No 221
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.91 E-value=2.2e-05 Score=71.00 Aligned_cols=54 Identities=24% Similarity=0.308 Sum_probs=35.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.||||||||++++........ .+.++.. ...+.++. .+.|+||||..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTE 60 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCcc
Confidence 5799999999999999999997654321 2222211 12233332 46789999964
No 222
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.91 E-value=1.9e-05 Score=74.46 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=58.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
+|+++|.+|||||||+|++.+.... ..++.++.... .+.+.. .+.|+||||...... .....+.+++.+.
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~ad~vi 75 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFE--PKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPA---MRKLSIQNSDAFA 75 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC--ccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhH---HHHHHhhcCCEEE
Confidence 4899999999999999999987642 22333332221 223322 578999999754311 1223456666666
Q ss_pred ccCCCchh-----HH----HHHhh---CCcchhhhhcCCCCCC
Q 011507 339 KLDDPVGP-----VK----EILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 339 ~l~d~~~~-----v~----~il~~---~~~~~l~~~~ki~~~~ 369 (484)
.+.|...+ +. .++.. ...+.++..|++|...
T Consensus 76 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~ 118 (198)
T cd04147 76 LVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLE 118 (198)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccc
Confidence 55554332 11 22222 1245666777776543
No 223
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=97.89 E-value=6.8e-05 Score=76.89 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC---CCCceeEEeeccCCCCHHHHH-HHHHHHHhcC--C
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVE-KWLKYLREEL--P 206 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~---~~K~~IlVLNKiDLvp~e~~~-~wl~~l~~~~--p 206 (484)
.+..++.+.++.+|++|+|+|+.++.+..+ ..+.+.+.... .++|+|+|+||+||.+.+.+. .....+...+ +
T Consensus 225 gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~ 304 (335)
T PRK12299 225 GLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGP 304 (335)
T ss_pred cHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC
Confidence 355667778899999999999997652111 11222222211 368999999999998765322 2222222222 2
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+ .+|+.+..|++.|++.|.++...
T Consensus 305 i~-------------------------~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 305 VF-------------------------LISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred EE-------------------------EEEcCCCCCHHHHHHHHHHHHHh
Confidence 22 34556778999999998876654
No 224
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=97.89 E-value=4.1e-05 Score=80.08 Aligned_cols=100 Identities=23% Similarity=0.275 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCC-----CCCCCCHHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHHhcCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARD-----PLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLREELP 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARd-----Pl~~r~~~le~~i~~~~---~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p 206 (484)
+...+.+.++.+|+||+|+|+.. |+... ..+.+.+.... .++|.|+|+||+||.+.+.+..++..+.+.++
T Consensus 227 Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 227 LGIRFLKHLERCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred HHHHHHHHHHhCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 44455668999999999999872 22111 12222332211 25899999999999987766666666655432
Q ss_pred e-EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 207 A-VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 207 ~-v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
. ..+ .++|+.+..|++.|++.|.++++..
T Consensus 306 ~~~~V----------------------i~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 306 WEGPV----------------------YLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCE----------------------EEEECCCCcCHHHHHHHHHHHhhhC
Confidence 1 001 1345567788999999998877654
No 225
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.89 E-value=4.4e-05 Score=82.83 Aligned_cols=120 Identities=21% Similarity=0.250 Sum_probs=73.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC--ccceecCC-------------------CCeeeeeEEEEe---CCcEEEEecCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC--HVANVGAT-------------------PGLTRSMQEVQL---DKNVKLLDCPG 316 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~--~~~~v~~~-------------------pg~Tr~~~~~~l---~~~i~liDTPG 316 (484)
...+|+|||.+|+|||||+++|+-. .+...|.. .|.|-......+ +..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 4578999999999999999998631 11111111 122222222222 45788999999
Q ss_pred CccCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 317 VVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 317 i~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.... .......++.++.+..+.|.... +..++.....+.+...||+|... +.++++..+....+
T Consensus 90 ~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~ 161 (527)
T TIGR00503 90 HEDF---SEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELK 161 (527)
T ss_pred hhhH---HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhC
Confidence 8532 23455567777777666654331 12233334456777889998653 66777777766655
No 226
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.88 E-value=2.9e-05 Score=70.56 Aligned_cols=56 Identities=18% Similarity=0.332 Sum_probs=36.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~ 318 (484)
..+|+++|.+||||||||++|.+.... .+..|.++.... .+.++. .+.++||||..
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 67 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcH
Confidence 478999999999999999999966532 122232322221 233332 46789999964
No 227
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.88 E-value=2.7e-05 Score=70.42 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=34.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCC---CeeeeeEEEEeC----CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATP---GLTRSMQEVQLD----KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p---g~Tr~~~~~~l~----~~i~liDTPGi~ 318 (484)
++|+|||.+|||||||+++|......-..... |.......+.++ -.+.++||||.-
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 63 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQE 63 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHH
Confidence 47999999999999999999854211112222 222111222222 257899999963
No 228
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.88 E-value=2.7e-05 Score=71.26 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=37.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeC---CcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~ 319 (484)
++|+++|.+|||||||||++..... ....++.|.......+..+ -.+.++||||...
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEK 61 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChh
Confidence 4799999999999999999985442 2233333433322223222 2578999999754
No 229
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=97.88 E-value=4.8e-05 Score=68.05 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=54.8
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC--CeEEEEccchhhhhhc
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL--PAVAFKCSTQEQRANL 221 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~--p~v~f~~~~~~~~~~~ 221 (484)
+.+|++|+|+|+.++.. +..+...+.. .++|+|+|+||+|+.+...+..|...+...+ +.+
T Consensus 73 ~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~------------- 135 (158)
T cd01879 73 EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVV------------- 135 (158)
T ss_pred CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeE-------------
Confidence 68999999999998643 2333333333 3689999999999987665555555554443 333
Q ss_pred CCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.+|+..+.|.+.+++.|..+
T Consensus 136 ------------~iSa~~~~~~~~l~~~l~~~ 155 (158)
T cd01879 136 ------------PTSARKGEGIDELKDAIAEL 155 (158)
T ss_pred ------------EEEccCCCCHHHHHHHHHHH
Confidence 33455667888888887664
No 230
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.87 E-value=3.2e-05 Score=81.13 Aligned_cols=107 Identities=18% Similarity=0.289 Sum_probs=63.5
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC------cccee---------cCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC------HVANV---------GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~------~~~~v---------~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+|+|||||+++|++. ..... ....|+|.+...+.+ +.++.|+||||...-.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 46799999999999999999999843 10111 113799988776665 3468999999974221
Q ss_pred CCChHHHHHHhccccccccCCCch---h-H---HHHHhhCCcchh-hhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG---P-V---KEILNRCPANLL-ISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~---~-v---~~il~~~~~~~l-~~~~ki~~~~ 369 (484)
......+.+++.+..+.|... + . ..++.....+.+ ..+||+|...
T Consensus 90 ---~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~ 142 (394)
T TIGR00485 90 ---KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (394)
T ss_pred ---HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCC
Confidence 112223334444433433322 1 1 122333344444 5689998654
No 231
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.87 E-value=2.9e-05 Score=71.77 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=47.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
..++|+++|.+|||||||++.|....... ..|.+......+.. .-.+.|+||||..... ......+++++.+..
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~---~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVETVTYKNISFTVWDVGGQDKIR---PLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCCccccceEEEEECCEEEEEEECCCChhhH---HHHHHHhCCCCEEEE
Confidence 35889999999999999999997544322 23322222222322 3368899999974321 112234567766655
Q ss_pred cCCC
Q 011507 340 LDDP 343 (484)
Q Consensus 340 l~d~ 343 (484)
+.|.
T Consensus 87 v~D~ 90 (175)
T smart00177 87 VVDS 90 (175)
T ss_pred EEEC
Confidence 5554
No 232
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=97.87 E-value=6.5e-05 Score=66.79 Aligned_cols=87 Identities=25% Similarity=0.369 Sum_probs=60.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
.+...+..+..+|++++|+|++++.+..+..+... ..++|+++|+||+|+++.... .+.....+.+.
T Consensus 70 ~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~~~~~~----~~~~~~~~~~~----- 136 (157)
T cd04164 70 GIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLLPDSEL----LSLLAGKPIIA----- 136 (157)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcCCcccc----ccccCCCceEE-----
Confidence 34456677889999999999999887766554433 257999999999999876543 11111223333
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.|+.+..|.+.|++.|.+++
T Consensus 137 --------------------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 137 --------------------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred --------------------EECCCCCCHHHHHHHHHHhh
Confidence 34566778999998887643
No 233
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.86 E-value=3.4e-05 Score=82.83 Aligned_cols=108 Identities=19% Similarity=0.193 Sum_probs=61.9
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCcccee--------------cC------------------CCCeeeeeEEEEe-
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCHVANV--------------GA------------------TPGLTRSMQEVQL- 305 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v--------------~~------------------~pg~Tr~~~~~~l- 305 (484)
.+..++|+|||.+|+|||||+++|+...-... |. ..|+|.+.....+
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 34679999999999999999999985421111 11 1244444433322
Q ss_pred --CCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCC-cchhhhhcCCCCCC
Q 011507 306 --DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 306 --~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~-~~~l~~~~ki~~~~ 369 (484)
+.++.|+||||...- .......+..++.+..+.|.... ...++.... +..+..+||+|...
T Consensus 104 ~~~~~i~~iDTPGh~~f---~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 104 TEKRKFIIADTPGHEQY---TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred cCCcEEEEEECCCcHHH---HHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecccc
Confidence 457999999994211 11223345566555555443221 122333333 34566789998653
No 234
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.86 E-value=2e-05 Score=86.58 Aligned_cols=104 Identities=15% Similarity=0.185 Sum_probs=62.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
+.|+++|.+|+|||||+|+|++.... .....+|+|.+..... + +..+.|+||||.-.. .......+.+++.+
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f---~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKF---ISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHH---HHHHHhhhccCCEE
Confidence 46999999999999999999975421 1223568887765433 3 346889999995321 01112233455555
Q ss_pred cccCCCch---h-H---HHHHhhCCcc-hhhhhcCCCCCC
Q 011507 338 EKLDDPVG---P-V---KEILNRCPAN-LLISLYKLPSFD 369 (484)
Q Consensus 338 ~~l~d~~~---~-v---~~il~~~~~~-~l~~~~ki~~~~ 369 (484)
..+.|... + . ..++.....+ .+...||+|...
T Consensus 78 ILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~ 117 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVN 117 (581)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCC
Confidence 44444322 1 1 1234444444 677788887653
No 235
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=97.86 E-value=4.7e-05 Score=69.40 Aligned_cols=63 Identities=27% Similarity=0.302 Sum_probs=42.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCC----CCCCHH---HHHHHHHhC--------CCCceeEEeeccCCCCHHHHHHH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPL----GTRCID---MEKMVMKAG--------PDKHLVLLLNKIDLVPRESVEKW 197 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl----~~r~~~---le~~i~~~~--------~~K~~IlVLNKiDLvp~e~~~~w 197 (484)
++.+++..+..+|+|++|+|+.++. +..... +...+.... .++|+++|+||+|+........|
T Consensus 64 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~ 141 (176)
T cd01881 64 LGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEE 141 (176)
T ss_pred ccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHH
Confidence 3445667788899999999999884 121111 111222111 36899999999999988777766
No 236
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=97.86 E-value=0.0001 Score=79.04 Aligned_cols=98 Identities=17% Similarity=0.230 Sum_probs=60.9
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCH-----HHHHHHHHh------------CCCCceeEEeeccCCCCHHHHHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMKA------------GPDKHLVLLLNKIDLVPRESVEK 196 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~-----~le~~i~~~------------~~~K~~IlVLNKiDLvp~e~~~~ 196 (484)
.+-.++.+.++.+|+||+|+|+.++..++++ .+.+.+... ...+|.|+|+||+||.+...+..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e 304 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAE 304 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHH
Confidence 4445667788999999999999654333321 122222111 13689999999999976554444
Q ss_pred HHH-HHHhc-CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 197 WLK-YLREE-LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 197 wl~-~l~~~-~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
++. ++... ++.+ .+|+.+..|.+.|+..|.+....
T Consensus 305 ~l~~~l~~~g~~Vf-------------------------~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 305 FVRPELEARGWPVF-------------------------EVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred HHHHHHHHcCCeEE-------------------------EEECCCCCCHHHHHHHHHHHHHh
Confidence 433 34332 2322 34456778899998888776543
No 237
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.86 E-value=3.3e-05 Score=73.96 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=48.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeC----CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~----~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
++|++||.+|||||||||.|.+.... ....|.++.+. ..+.++ -.+.|+||||-..+. .-....+++++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~-~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~---~l~~~~~~~ad~ 76 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFG-KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG---KMLDKYIYGAHA 76 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH---HHHHHHhhcCCE
Confidence 47999999999999999999976542 22223333222 223343 257899999964321 122234677777
Q ss_pred ccccCCCc
Q 011507 337 IEKLDDPV 344 (484)
Q Consensus 337 i~~l~d~~ 344 (484)
+..+.|..
T Consensus 77 iilV~D~t 84 (215)
T cd04109 77 VFLVYDVT 84 (215)
T ss_pred EEEEEECC
Confidence 66665543
No 238
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=97.85 E-value=3.2e-05 Score=71.25 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHV 287 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~ 287 (484)
.++|+++|.+|||||||+|++.+...
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~ 29 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKF 29 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999999987653
No 239
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.83 E-value=2.9e-05 Score=71.05 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=35.1
Q ss_pred EEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeCC---cEEEEecCCCcc
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~~---~i~liDTPGi~~ 319 (484)
|+|+|.+|||||||+|++.+.... ....|.+.... ..+.++. .+.++||||.-.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 58 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQED 58 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcc
Confidence 589999999999999999987642 22222222211 1233333 478999999653
No 240
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.83 E-value=3.3e-05 Score=71.76 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=35.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeC--C--cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLD--K--NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~--~--~i~liDTPGi~ 318 (484)
++|+|+|.+|||||||+|+|.+.... ....|.+.... ..+..+ . .+.|+||||..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~ 60 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQE 60 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCch
Confidence 47999999999999999999987642 11222222221 122222 1 47889999953
No 241
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.83 E-value=3.9e-05 Score=69.76 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=36.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.+|||||||++.+.+...... .++.|.......+.++. .+.++||||-.
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 60 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 3699999999999999999997764321 22222222222333433 56789999953
No 242
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.82 E-value=3.4e-05 Score=74.38 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=36.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc-eecCCCCe-eeeeEEEEe---CCcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGL-TRSMQEVQL---DKNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~-Tr~~~~~~l---~~~i~liDTPGi~ 318 (484)
++|+++|.+|||||||+|++.+.... .....++. +.....+.+ +..+.|+||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~ 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc
Confidence 37999999999999999999765432 22222221 222222333 3468899999986
No 243
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.82 E-value=3.5e-05 Score=71.86 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=48.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
..++|.++|.+|||||||++.|.........++.|.+. ..+.. +-.+.|+||||-... .......+++++.+..
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~---~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKI---RPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCCHHH---HHHHHHHhccCCEEEE
Confidence 45799999999999999999998655444444444432 22333 346889999995221 0111223566665555
Q ss_pred cCCC
Q 011507 340 LDDP 343 (484)
Q Consensus 340 l~d~ 343 (484)
+.|.
T Consensus 91 V~D~ 94 (181)
T PLN00223 91 VVDS 94 (181)
T ss_pred EEeC
Confidence 5443
No 244
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.82 E-value=0.00012 Score=71.53 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
...|+|||-.++||||++|+|.+..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~ 50 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCC
Confidence 4589999999999999999999875
No 245
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.80 E-value=3.1e-05 Score=66.28 Aligned_cols=76 Identities=22% Similarity=0.259 Sum_probs=44.9
Q ss_pred EEEEecCCCCchhHHHHHhhcCccc---eecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVA---NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~---~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
+|.|+|.+||||||||++|.+.... ......+.|.......+. ..+.+.|++|-......... .+..++.+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~---~~~~~d~~ 77 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQF---FLKKADAV 77 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHH---HHHHSCEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccc---hhhcCcEE
Confidence 5899999999999999999988754 122333444433333221 24788999998544222222 25666655
Q ss_pred cccCC
Q 011507 338 EKLDD 342 (484)
Q Consensus 338 ~~l~d 342 (484)
..+-|
T Consensus 78 ilv~D 82 (119)
T PF08477_consen 78 ILVYD 82 (119)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 44443
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.80 E-value=7.7e-05 Score=80.94 Aligned_cols=120 Identities=20% Similarity=0.278 Sum_probs=70.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC--ccceecCCC-------------------CeeeeeEE--EEe-CCcEEEEecCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC--HVANVGATP-------------------GLTRSMQE--VQL-DKNVKLLDCPG 316 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~--~~~~v~~~p-------------------g~Tr~~~~--~~l-~~~i~liDTPG 316 (484)
...+|+|||.+|+|||||+++|+.. .+...|... |.|-.... +.. +..+.|+||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 3468999999999999999999731 111122111 11111111 222 45689999999
Q ss_pred CccCCCCChHHHHHHhccccccccCCCchh----HHH---HHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 317 VVMLKSGENDASIALRNCKRIEKLDDPVGP----VKE---ILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 317 i~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~---il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.... ..+....++.++.+..+.|.... ... +......+.+...||+|... +..+.+..+....|
T Consensus 89 ~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDF---SEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred chhh---HHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 8543 13455567777777666665331 122 23334556777889998643 55566666655444
No 247
>PTZ00369 Ras-like protein; Provisional
Probab=97.80 E-value=4.3e-05 Score=71.49 Aligned_cols=57 Identities=23% Similarity=0.255 Sum_probs=37.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
.++|+|+|.+|||||||++++.+.... ...++.|.+. ...+.++. .+.++||||...
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 65 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEE 65 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCcc
Confidence 478999999999999999999976542 1222222222 11223333 467899999754
No 248
>COG2262 HflX GTPases [General function prediction only]
Probab=97.79 E-value=5.6e-05 Score=77.69 Aligned_cols=111 Identities=25% Similarity=0.353 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCC-CHHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcCC-eE
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREELP-AV 208 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r-~~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p-~v 208 (484)
-.+|...|..+ ..||++|.|+||.+|.... -..+++.+.+.+ ..+|.|+|+||+|+++.+.. +..+....| .+
T Consensus 259 V~AFksTLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v 334 (411)
T COG2262 259 VEAFKSTLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPV 334 (411)
T ss_pred HHHHHHHHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeE
Confidence 34554444443 4699999999999993222 123444555432 36899999999999987652 222333334 23
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCc
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVG 274 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvG 274 (484)
++|+.++.|.+.|.+.|........ ...-..+.+.+.|
T Consensus 335 -------------------------~iSA~~~~gl~~L~~~i~~~l~~~~---~~~~l~lp~~~~~ 372 (411)
T COG2262 335 -------------------------FISAKTGEGLDLLRERIIELLSGLR---TEVTLELPYTDAG 372 (411)
T ss_pred -------------------------EEEeccCcCHHHHHHHHHHHhhhcc---cceEEEcCccccc
Confidence 3456788899999999887665322 1223444555666
No 249
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.79 E-value=0.00016 Score=63.64 Aligned_cols=62 Identities=32% Similarity=0.402 Sum_probs=47.4
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHH
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLK 199 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~ 199 (484)
...+...+..+|++++|+|+.++.......+..... ..+.|+++|+||+|+++......|..
T Consensus 66 ~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~ 127 (163)
T cd00880 66 EELARRVLERADLILFVVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDLLPEEEEEELLE 127 (163)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEccccCChhhHHHHHH
Confidence 456677888999999999999997765554222222 24789999999999999887777753
No 250
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=97.79 E-value=0.00016 Score=66.37 Aligned_cols=94 Identities=17% Similarity=0.259 Sum_probs=59.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~~p~v~f~ 211 (484)
|.......+..+|++|.|+|+.++.+.........+.. .++|+|+|+||+||.+.. ....+.+.+. .+...+
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~--~~~~~~- 154 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKIDLPSADPERVKQQIEDVLG--LDPSEA- 154 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCCCCcCCHHHHHHHHHHHhC--CCcccE-
Confidence 55666778889999999999998765433322222222 468999999999996432 1223333221 111101
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+..+.|.+.|++.|....
T Consensus 155 ---------------------~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 155 ---------------------ILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ---------------------EEeeccCCCCHHHHHHHHHhhC
Confidence 1345667789999998887654
No 251
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.78 E-value=4.8e-05 Score=72.77 Aligned_cols=77 Identities=23% Similarity=0.294 Sum_probs=47.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeC----CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~----~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
++|+|+|.+|||||||||+|.+.+..... .|.++.+.. .+.+. -.+.|+||||..... ......+++++.
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~~d~ 78 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFR---SITRSYYRNSVG 78 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHH---HHHHHHhcCCcE
Confidence 68999999999999999999987754332 233322221 22221 257899999964221 112234566666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 79 iilv~D~ 85 (211)
T cd04111 79 VLLVFDI 85 (211)
T ss_pred EEEEEEC
Confidence 6555444
No 252
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=97.77 E-value=0.00012 Score=75.52 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=56.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEEccc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFKCST 214 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~~~~ 214 (484)
..+..+..||+||+|+|+.+|..... ..+...+...+ .++|+|+|+||+||++.+.+..+ ...+ +.+
T Consensus 261 ~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~----~~~~~~~i------ 330 (351)
T TIGR03156 261 ATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERL----EEGYPEAV------ 330 (351)
T ss_pred HHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHH----HhCCCCEE------
Confidence 34556889999999999999975322 12234444332 36899999999999876544322 1122 222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.+|+.++.|.+.|++.|.+
T Consensus 331 -------------------~iSAktg~GI~eL~~~I~~ 349 (351)
T TIGR03156 331 -------------------FVSAKTGEGLDLLLEAIAE 349 (351)
T ss_pred -------------------EEEccCCCCHHHHHHHHHh
Confidence 3455677899999988865
No 253
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.77 E-value=9.3e-05 Score=67.98 Aligned_cols=79 Identities=15% Similarity=0.129 Sum_probs=48.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee---eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS---MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~---~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~ 334 (484)
+.++|+++|.+|||||||+|++.+.... +..+.+|+.. ...+.++. .+.+.||+|-..... .....+.++
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~---~~~~~~~~~ 78 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL---LNDAELAAC 78 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc---cchhhhhcC
Confidence 3578999999999999999999987643 2333333321 12233333 467789998653321 112234667
Q ss_pred ccccccCCC
Q 011507 335 KRIEKLDDP 343 (484)
Q Consensus 335 ~~i~~l~d~ 343 (484)
+.+..+.|.
T Consensus 79 d~~llv~d~ 87 (169)
T cd01892 79 DVACLVYDS 87 (169)
T ss_pred CEEEEEEeC
Confidence 666655554
No 254
>PLN03108 Rab family protein; Provisional
Probab=97.76 E-value=5.8e-05 Score=72.09 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=48.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.++|+|+|.+|||||||+|.|.+...... .++.|++.....+.++. .+.++||||..... ......+++++.+
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~---~~~~~~~~~ad~~ 82 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFR---SITRSYYRGAAGA 82 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHH---HHHHHHhccCCEE
Confidence 47899999999999999999998754332 22334433333344432 47799999964321 1122345566555
Q ss_pred cccCCC
Q 011507 338 EKLDDP 343 (484)
Q Consensus 338 ~~l~d~ 343 (484)
..+.|.
T Consensus 83 vlv~D~ 88 (210)
T PLN03108 83 LLVYDI 88 (210)
T ss_pred EEEEEC
Confidence 555444
No 255
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.75 E-value=6e-05 Score=69.38 Aligned_cols=74 Identities=30% Similarity=0.303 Sum_probs=43.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
+|++||.+|||||||+|++.+.... ...++.|..-....+.++ ..+.|+||||...... .....+++++.+..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~ad~~il 78 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC---IASTYYRGAQAIII 78 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHh---hHHHHhcCCCEEEE
Confidence 6899999999999999999987531 111222222111223332 2588999999743211 11234555555443
Q ss_pred c
Q 011507 340 L 340 (484)
Q Consensus 340 l 340 (484)
+
T Consensus 79 v 79 (170)
T cd04108 79 V 79 (170)
T ss_pred E
Confidence 3
No 256
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.75 E-value=0.00024 Score=74.81 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCC-CCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEE
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl-~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~ 211 (484)
+.|.+++...+..+|++|.|+||+++. ..........+.. .+.+++|+|+||+||++.+........+.+..... +.
T Consensus 91 ~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~-~~ 168 (406)
T TIGR03680 91 ETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGT-VA 168 (406)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhc-cc
Confidence 457788888888999999999999875 2222222223322 23567999999999998654332232232211000 00
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
......+.|+..+.|.+.|++.|.++.+
T Consensus 169 ----------------~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 169 ----------------ENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred ----------------CCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 0000124566778899999999988654
No 257
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.74 E-value=3.4e-05 Score=73.32 Aligned_cols=23 Identities=39% Similarity=0.644 Sum_probs=20.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
++||++|..++|||||+.+|.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999765
No 258
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.74 E-value=2.6e-05 Score=67.61 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=41.3
Q ss_pred EecCCCCchhHHHHHhhcCccceecCCCCeee-eeE--EEEe---CCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 267 VIGLPNVGKSSLINSLKRCHVANVGATPGLTR-SMQ--EVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 267 vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr-~~~--~~~l---~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
|+|.||+|||||+|+|.+..... .....|. ... .+.. ...+.++||||...... .....+..++.+..+
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~i~v 75 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVP--EEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRS---LRRLYYRGADGIILV 75 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCC--cccccchhheeeEEEEECCEEEEEEEEecCChHHHHh---HHHHHhcCCCEEEEE
Confidence 68999999999999999876521 1112222 111 1222 34689999999875422 112344455544444
Q ss_pred CC
Q 011507 341 DD 342 (484)
Q Consensus 341 ~d 342 (484)
.|
T Consensus 76 ~d 77 (157)
T cd00882 76 YD 77 (157)
T ss_pred EE
Confidence 33
No 259
>PLN03126 Elongation factor Tu; Provisional
Probab=97.74 E-value=6.5e-05 Score=80.53 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=63.3
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccc---------------eecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVA---------------NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~---------------~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
+..++|+++|.+|+|||||+|+|+..... .-....|+|.+.....+ +..+.|+||||...--
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 46799999999999999999999953211 11233577776554433 4578999999974321
Q ss_pred CCChHHHHHHhccccccccCCCc----hh---HHHHHhhCCcc-hhhhhcCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPV----GP---VKEILNRCPAN-LLISLYKLPSFD 369 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~----~~---v~~il~~~~~~-~l~~~~ki~~~~ 369 (484)
......+..++....+.|.. .. ...++.....+ .+..+||+|...
T Consensus 159 ---~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~ 211 (478)
T PLN03126 159 ---KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD 211 (478)
T ss_pred ---HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC
Confidence 12223344444433333322 11 12233444444 445789998654
No 260
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.73 E-value=4.8e-05 Score=73.43 Aligned_cols=75 Identities=23% Similarity=0.230 Sum_probs=45.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~ 341 (484)
++|+|||.+|||||||++++.........++-|. ......+ ...+.|+||||-..... .....+++++.+..+.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~--~~~~~~~~~~~l~iwDt~G~e~~~~---l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGG--AFYLKQWGPYNISIWDTAGREQFHG---LGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccce--EEEEEEeeEEEEEEEeCCCcccchh---hHHHHhccCCEEEEEE
Confidence 4699999999999999999998775332222221 1111111 23688999999753321 1223455666554444
Q ss_pred C
Q 011507 342 D 342 (484)
Q Consensus 342 d 342 (484)
|
T Consensus 76 D 76 (220)
T cd04126 76 D 76 (220)
T ss_pred E
Confidence 4
No 261
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.73 E-value=4.8e-05 Score=84.03 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=62.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
+.||++|.+|+|||||+|+|++.... ......|+|.+.....+ +..+.|+||||.-... ......+.+++.
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi---~~m~~g~~~~D~ 77 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFL---SNMLAGVGGIDH 77 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHH---HHHHHHhhcCCE
Confidence 35899999999999999999985422 22344688887654433 2457899999973210 112223455555
Q ss_pred ccccCCCch---h----HHHHHhhCCcch-hhhhcCCCCCC
Q 011507 337 IEKLDDPVG---P----VKEILNRCPANL-LISLYKLPSFD 369 (484)
Q Consensus 337 i~~l~d~~~---~----v~~il~~~~~~~-l~~~~ki~~~~ 369 (484)
+..+.|... + ...++.....+. +.++||+|...
T Consensus 78 ~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~ 118 (614)
T PRK10512 78 ALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVD 118 (614)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCC
Confidence 444444322 1 122444444443 57889998653
No 262
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.73 E-value=0.00029 Score=66.66 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e~ 193 (484)
..|..++...+..+|+++.|+||..........+..++... ++| +|+++||+|+++.+.
T Consensus 76 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK~D~~~~~~ 135 (195)
T cd01884 76 ADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNKADMVDDEE 135 (195)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeCCCCCCcHH
Confidence 35888999999999999999999987665555555555543 455 788999999986443
No 263
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.73 E-value=7.1e-05 Score=69.03 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=36.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee-ee-EEEEeCC---cEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR-SM-QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr-~~-~~~~l~~---~i~liDTPGi~~ 319 (484)
.++|+|+|.+|||||||++.+....... ....++. .. ..+.++. .+.|+||||...
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 62 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPD--YHDPTIEDAYKQQARIDNEPALLDILDTAGQAE 62 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCC--CcCCcccceEEEEEEECCEEEEEEEEeCCCchh
Confidence 3689999999999999999999765421 1111111 11 1233332 478899999754
No 264
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.72 E-value=0.00011 Score=67.06 Aligned_cols=96 Identities=16% Similarity=0.156 Sum_probs=59.9
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH---HHHHHHHHHhcCCeE-EE
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES---VEKWLKYLREELPAV-AF 210 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~---~~~wl~~l~~~~p~v-~f 210 (484)
..+...+..+|+++.|+|+.+|.+... ......+....++.|+++|.||+||.+... ++..+..+...++.. .+
T Consensus 62 ~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (166)
T cd01893 62 ANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETC 141 (166)
T ss_pred HHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEE
Confidence 345556789999999999998865433 122333444345789999999999987543 233333333322211 11
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|.+.+++.+..++
T Consensus 142 ----------------------~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 142 ----------------------VECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ----------------------EEeccccccCHHHHHHHHHHHh
Confidence 1345567788999988776643
No 265
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.72 E-value=8.1e-05 Score=71.18 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=57.3
Q ss_pred EEEEecCCCCchhHHHHHhhcCcccee---cCC---------------CCeeeeeEEEE--e------CCcEEEEecCCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANV---GAT---------------PGLTRSMQEVQ--L------DKNVKLLDCPGV 317 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v---~~~---------------pg~Tr~~~~~~--l------~~~i~liDTPGi 317 (484)
+|+|+|.+++|||||+++|........ ... .|+|-....+. + ...+.|+||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432211 011 22332221111 1 135789999998
Q ss_pred ccCCCCChHHHHHHhccccccccCCCchh----HHHH---HhhCCcchhhhhcCCCCC
Q 011507 318 VMLKSGENDASIALRNCKRIEKLDDPVGP----VKEI---LNRCPANLLISLYKLPSF 368 (484)
Q Consensus 318 ~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~i---l~~~~~~~l~~~~ki~~~ 368 (484)
... .......+..++.+..+.|.... ...+ +.....+.+...||+|..
T Consensus 82 ~~f---~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF---MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cch---HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 643 12334456666665555443221 1122 222334567778998864
No 266
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.72 E-value=7.7e-05 Score=71.78 Aligned_cols=59 Identities=14% Similarity=0.137 Sum_probs=42.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeC---CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~ 319 (484)
..++|++||.+|||||||++++..... ....++.|++.....+..+ -.+.|+||||.-.
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 74 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchh
Confidence 468999999999999999999875543 3345566665554444332 2678999999754
No 267
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.71 E-value=7e-05 Score=68.52 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=35.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
.+|+|+|.+|||||||++++.+..... ..++.+.+- ...+.++. .+.++||||..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~ 60 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQE 60 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCch
Confidence 479999999999999999999865321 111111111 11233332 57899999974
No 268
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.70 E-value=0.00018 Score=62.26 Aligned_cols=95 Identities=23% Similarity=0.300 Sum_probs=71.7
Q ss_pred cchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEE
Q 011507 130 NSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVA 209 (484)
Q Consensus 130 ~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~ 209 (484)
-..+.+|..|--...++|||++|.-|.||.+...|.+.... .+|+|=|++|+||.....+..-..+|++-...-.
T Consensus 49 ~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~I 123 (148)
T COG4917 49 FEHPRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPI 123 (148)
T ss_pred hhhhHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcce
Confidence 34567888899999999999999999999999888876653 5779999999999965555555555665443223
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
| .+|+.+..|+++|..+|..
T Consensus 124 F-----------------------~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 124 F-----------------------ETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred E-----------------------EEeccCcccHHHHHHHHHh
Confidence 3 3445677789999888864
No 269
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=97.70 E-value=0.00026 Score=66.82 Aligned_cols=87 Identities=29% Similarity=0.447 Sum_probs=56.7
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEEccc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFKCST 214 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~~~~ 214 (484)
.....+..+|+|++|+|+++|..... ..+.+++.... .++|+|+|+||+|+.+..... ..+.... +.+
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~------ 183 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAV------ 183 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceE------
Confidence 34445678999999999999876543 23344444332 368999999999998876544 2222222 222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.+|+..+.|.+.+++.|..
T Consensus 184 -------------------~~Sa~~~~gi~~l~~~L~~ 202 (204)
T cd01878 184 -------------------FISAKTGEGLDELLEAIEE 202 (204)
T ss_pred -------------------EEEcCCCCCHHHHHHHHHh
Confidence 3345667788888887754
No 270
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.70 E-value=0.00025 Score=74.81 Aligned_cols=100 Identities=16% Similarity=0.228 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCC-CCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHH----HHHHHHHHhcC-C
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESV----EKWLKYLREEL-P 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl-~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~----~~wl~~l~~~~-p 206 (484)
..|..++...+..+|++|.|+||++|. ..........+... +.+++|+|+||+||++.+.. ..+..++...+ .
T Consensus 96 ~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~i~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 174 (411)
T PRK04000 96 ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-GIKNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAE 174 (411)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEEeeccccchhHHHHHHHHHHHhccccCC
Confidence 457778888888899999999999886 33333333333322 34678999999999975432 22222222211 0
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+++ .++|+.++.|.+.|++.|.++.+
T Consensus 175 ~~~i----------------------i~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 175 NAPI----------------------IPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred CCeE----------------------EEEECCCCcCHHHHHHHHHHhCC
Confidence 1111 23556777899999999988654
No 271
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.68 E-value=3.1e-05 Score=85.33 Aligned_cols=79 Identities=27% Similarity=0.328 Sum_probs=49.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc--------ee------cCCCCeeeeeEEEEe--------CCcEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA--------NV------GATPGLTRSMQEVQL--------DKNVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~--------~v------~~~pg~Tr~~~~~~l--------~~~i~liDTPGi~~ 319 (484)
-.+|+|||..++|||||+++|....-+ .+ ....|+|-..+.+.+ +..+.|+||||...
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 357999999999999999999853110 11 112466655443332 23588999999975
Q ss_pred CCCCChHHHHHHhccccccccCCC
Q 011507 320 LKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
.. ......++.|+.+..+.|.
T Consensus 87 F~---~~v~~sl~~aD~aILVVDa 107 (600)
T PRK05433 87 FS---YEVSRSLAACEGALLVVDA 107 (600)
T ss_pred HH---HHHHHHHHHCCEEEEEEEC
Confidence 42 2344556677665555443
No 272
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=97.67 E-value=0.00044 Score=76.49 Aligned_cols=97 Identities=16% Similarity=0.178 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHH----HHHHHHHhc----
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVE----KWLKYLREE---- 204 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~----~wl~~l~~~---- 204 (484)
+.|.+++...+..+|+++.|+||.++......+...++... +..++|+|+||+|+++.+.+. .+.+++...
T Consensus 62 e~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~ 140 (614)
T PRK10512 62 EKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAE 140 (614)
T ss_pred HHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 45778888889999999999999987654444444444432 233467999999999865433 333333322
Q ss_pred CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 205 ~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.|.+ ++|+.++.|.+.|++.|..+..
T Consensus 141 ~~ii-------------------------~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 141 AKLF-------------------------VTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred CcEE-------------------------EEeCCCCCCCHHHHHHHHHhhc
Confidence 2222 3455677888999999887654
No 273
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.67 E-value=5.4e-05 Score=72.85 Aligned_cols=102 Identities=16% Similarity=0.150 Sum_probs=59.8
Q ss_pred EEEEecCCCCchhHHHHHhhcCcc------------------------------ceecCCCCeeeeeEEEEe---CCcEE
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHV------------------------------ANVGATPGLTRSMQEVQL---DKNVK 310 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~------------------------------~~v~~~pg~Tr~~~~~~l---~~~i~ 310 (484)
+|+++|.+++|||||+.+|...-- .......|+|++...+.+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 489999999999999999963210 001124688888766554 45789
Q ss_pred EEecCCCccCCCCChHHHHHHhccccccccCCCchh-----------H---HHHHhhCC-cchhhhhcCCCCC
Q 011507 311 LLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------V---KEILNRCP-ANLLISLYKLPSF 368 (484)
Q Consensus 311 liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-----------v---~~il~~~~-~~~l~~~~ki~~~ 368 (484)
|+||||..... ......+..++.+..|.|.... . ..++.... ++.+..+||+|..
T Consensus 81 liDtpG~~~~~---~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFV---PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHH---HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 99999974221 1222334445555444443221 0 11222233 3456677888765
No 274
>PRK10218 GTP-binding protein; Provisional
Probab=97.66 E-value=0.0002 Score=78.93 Aligned_cols=103 Identities=13% Similarity=0.192 Sum_probs=65.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce---------------ecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN---------------VGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE 324 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~---------------v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~ 324 (484)
.+|+|||.+++|||||+++|+...-.. .....|+|.......+ +..+.|+||||.....
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~--- 82 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG--- 82 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH---
Confidence 579999999999999999999632110 1124577766544433 3478999999976542
Q ss_pred hHHHHHHhccccccccCCCchh----H---HHHHhhCCcchhhhhcCCCCC
Q 011507 325 NDASIALRNCKRIEKLDDPVGP----V---KEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 325 ~~~~~~L~~~~~i~~l~d~~~~----v---~~il~~~~~~~l~~~~ki~~~ 368 (484)
......++.++.+..+.|.... . ...+.....+.+..+||+|..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~ 133 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRP 133 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCC
Confidence 2344567777776666554321 1 122233445667788999864
No 275
>PTZ00416 elongation factor 2; Provisional
Probab=97.65 E-value=0.00011 Score=84.17 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=62.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee---------------e--EEEEe-----------CCcEEEEe
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS---------------M--QEVQL-----------DKNVKLLD 313 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~---------------~--~~~~l-----------~~~i~liD 313 (484)
-.+|+|+|.+++|||||+++|+...-+......|.|+. . ....+ +..+.|+|
T Consensus 19 irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liD 98 (836)
T PTZ00416 19 IRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLID 98 (836)
T ss_pred cCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEc
Confidence 45899999999999999999997533322334444442 1 11111 23588999
Q ss_pred cCCCccCCCCChHHHHHHhccccccccCCCchh----HHHHHh---hCCcchhhhhcCCCCC
Q 011507 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEILN---RCPANLLISLYKLPSF 368 (484)
Q Consensus 314 TPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il~---~~~~~~l~~~~ki~~~ 368 (484)
|||...-. .++..+++.++.+..+.|.... ...+++ ....+.+..+||+|..
T Consensus 99 tPG~~~f~---~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 99 SPGHVDFS---SEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA 157 (836)
T ss_pred CCCHHhHH---HHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence 99997531 2345566666665545443321 222332 2334567778998865
No 276
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=97.65 E-value=0.00016 Score=65.05 Aligned_cols=96 Identities=19% Similarity=0.140 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCH-HHHHHHHHHHHhcCCeEEE
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-ESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~-e~~~~wl~~l~~~~p~v~f 210 (484)
.+.......+..+|++|.|.|+.+|-+... ..+..+......+.|+++|+||+|+... .....+...+.+.+....+
T Consensus 61 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (161)
T cd01861 61 RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFI 140 (161)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEE
Confidence 344456667889999999999988754221 2222222222235899999999999533 2233344444443332222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.|++.|.+
T Consensus 141 -----------------------~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 141 -----------------------ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHH
Confidence 2445677899999988865
No 277
>PRK12736 elongation factor Tu; Reviewed
Probab=97.64 E-value=7e-05 Score=78.58 Aligned_cols=106 Identities=18% Similarity=0.266 Sum_probs=63.5
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCcc------ceec---------CCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHV------ANVG---------ATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~------~~v~---------~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
++.++|+++|.+++|||||+++|++... .... ...|+|.+.....+ +.++.|+||||...--
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 4579999999999999999999986310 0111 15788988765554 3578999999953210
Q ss_pred CCChHHHHHHhccccccccCCCch---h----HHHHHhhCCcc-hhhhhcCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPAN-LLISLYKLPSF 368 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~---~----v~~il~~~~~~-~l~~~~ki~~~ 368 (484)
......+..++.+..+.|... + ...++...+.+ .+..+||+|..
T Consensus 90 ---~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 90 ---KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred ---HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 112223344444444444321 1 12233334444 35668999865
No 278
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.61 E-value=0.00063 Score=63.83 Aligned_cols=67 Identities=21% Similarity=0.243 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYLR 202 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~---e~~~~wl~~l~ 202 (484)
.|.......+..+|+++.|+|+.+........+...+.. .+.|+++|+||+||... ..+..+..++.
T Consensus 77 ~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 146 (194)
T cd01891 77 DFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFI 146 (194)
T ss_pred HHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 366677778899999999999998533222222222222 36899999999999743 23556666653
No 279
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=97.61 E-value=0.00037 Score=65.01 Aligned_cols=88 Identities=17% Similarity=0.230 Sum_probs=59.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHH----HHHHhc-CCeEEEEccch
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWL----KYLREE-LPAVAFKCSTQ 215 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl----~~l~~~-~p~v~f~~~~~ 215 (484)
+..+.+|+++.|+|+.+|+......+.+.+.. .+.|+++|+||+|+.+........ .++... .+.+
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~------- 172 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI------- 172 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE-------
Confidence 33445688999999999877655556666653 368899999999999765444333 333321 1222
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+.|+.++.|.+.+++.|..++.
T Consensus 173 ------------------~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 173 ------------------LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred ------------------EEEcCCCCCHHHHHHHHHHHhc
Confidence 3455677899999999987664
No 280
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.60 E-value=0.00015 Score=66.20 Aligned_cols=74 Identities=26% Similarity=0.311 Sum_probs=46.0
Q ss_pred EEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccCC
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d 342 (484)
|+++|.+|||||||++++.+... ....++.|... ..+.. +..+.++||||-.... ......+++++.+..+.|
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLR---KYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchh---HHHHHHHhhCCEEEEEEE
Confidence 78999999999999999997643 12223333321 12222 3468899999964321 222345677776665555
Q ss_pred C
Q 011507 343 P 343 (484)
Q Consensus 343 ~ 343 (484)
.
T Consensus 77 ~ 77 (164)
T cd04162 77 S 77 (164)
T ss_pred C
Confidence 4
No 281
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=97.60 E-value=0.00019 Score=64.45 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=55.1
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCeEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPAVA 209 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~---~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~----~p~v~ 209 (484)
....+..+|++|+|+|+.++.+.. ..++..++.. ...+.|+++|+||+||.+......+...+.-. .+...
T Consensus 62 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~ 141 (162)
T cd04157 62 WEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHI 141 (162)
T ss_pred HHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEE
Confidence 345578899999999999885321 1233333321 11368999999999997643333333333211 11111
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
| .+|+.++.|.+.+++.|.
T Consensus 142 ~-----------------------~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 142 F-----------------------ASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred E-----------------------EeeCCCCCchHHHHHHHh
Confidence 1 356678889999988774
No 282
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.60 E-value=0.00014 Score=68.15 Aligned_cols=54 Identities=28% Similarity=0.324 Sum_probs=35.3
Q ss_pred EEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeC---CcEEEEecCCCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~---~~i~liDTPGi~ 318 (484)
+|+|+|.+|||||||++++.+...... .++.+.. ....+.++ ..+.|+||||--
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~-~~~~i~~~~~~~~l~i~Dt~G~~ 59 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN-YVHDIFVDGLHIELSLWDTAGQE 59 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee-eEEEEEECCEEEEEEEEECCCCh
Confidence 689999999999999999998654321 1111111 11223333 257899999974
No 283
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=97.59 E-value=0.00019 Score=64.46 Aligned_cols=96 Identities=16% Similarity=0.116 Sum_probs=55.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHh-cC---Ce
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLRE-EL---PA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~-~~---p~ 207 (484)
+.......+..+|+||+|+|+++|.... ...+.+.+... ..+.|+++|+||+|+............+.. .+ ..
T Consensus 57 ~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~ 136 (160)
T cd04156 57 MRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRD 136 (160)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCc
Confidence 3334445688899999999999985211 12233333221 146899999999999643222222222210 11 01
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
+.+ ...|+.++.|++.+++.|.+
T Consensus 137 ~~~----------------------~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 137 WYV----------------------QPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred EEE----------------------EecccccCCChHHHHHHHhc
Confidence 111 13566788899999888754
No 284
>PRK13768 GTPase; Provisional
Probab=97.59 E-value=0.00024 Score=70.05 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=64.0
Q ss_pred HHHHHHHhhh--cCEEEEEEecCCCCCCCCHHHHHHHH---HhCCCCceeEEeeccCCCCHHHHHHHHHHHHh------c
Q 011507 136 YKELVKVIEV--SDVILEVLDARDPLGTRCIDMEKMVM---KAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE------E 204 (484)
Q Consensus 136 ~~el~kvie~--sDvIleVlDARdPl~~r~~~le~~i~---~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~------~ 204 (484)
++.+.+.++. +|+|++|+|++.+...........+. ....++|+|+|+||+|+++.........++.. .
T Consensus 117 ~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~~~~~~ 196 (253)
T PRK13768 117 GRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSEEELERILKWLEDPEYLLEE 196 (253)
T ss_pred HHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCchhHHHHHHHHhCHHHHHHH
Confidence 3444444444 89999999998755433322222221 11247899999999999987655443443331 1
Q ss_pred CCe-EEEEccchhhhhhcCC--CccCCCCCCcccccccccCHHHHHHHHHhhhhhcc
Q 011507 205 LPA-VAFKCSTQEQRANLGW--KSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 205 ~p~-v~f~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~ 258 (484)
+.. ..+. ..-...+.. ..........++|+.+..|.+.|++.|.+++..++
T Consensus 197 l~~~~~~~---~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~ 250 (253)
T PRK13768 197 LKLEKGLQ---GLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE 250 (253)
T ss_pred HhcccchH---HHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence 000 0000 000000000 00000012235677788999999999999876543
No 285
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.59 E-value=0.00012 Score=69.77 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=39.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCC----cEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK----NVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~----~i~liDTPGi~~~ 320 (484)
++|+|+|.+|||||||+|+|.+...........++.......... .+.++||+|...-
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~ 67 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEY 67 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHH
Confidence 789999999999999999999887543322222222222222222 3788999998643
No 286
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.59 E-value=0.00012 Score=69.76 Aligned_cols=75 Identities=25% Similarity=0.376 Sum_probs=46.1
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-----CCcEEEEecCCCccCCCCChHHHHHHhcc-ccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-----DKNVKLLDCPGVVMLKSGENDASIALRNC-KRI 337 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-----~~~i~liDTPGi~~~~~~~~~~~~~L~~~-~~i 337 (484)
+|.++|.+|||||||++.|.......+ .+.++.....+.. +..+.|+||||..... ......++++ ..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~---~~~~~~~~~~~~~v 76 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLR---DKLLETLKNSAKGI 76 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHHH---HHHHHHHhccCCEE
Confidence 589999999999999999998754222 2223222222222 3468999999975331 2223345555 555
Q ss_pred cccCCC
Q 011507 338 EKLDDP 343 (484)
Q Consensus 338 ~~l~d~ 343 (484)
..+.|.
T Consensus 77 V~VvD~ 82 (203)
T cd04105 77 VFVVDS 82 (203)
T ss_pred EEEEEC
Confidence 555544
No 287
>PLN03127 Elongation factor Tu; Provisional
Probab=97.55 E-value=0.00081 Score=71.72 Aligned_cols=58 Identities=22% Similarity=0.243 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e~ 193 (484)
.|+.++...+..+|+++.|+||+++.......+..++... +.| +|+|+||+|+++.+.
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEEeeccCCHHH
Confidence 4788888888899999999999988765554555555443 567 578999999997543
No 288
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.54 E-value=0.00048 Score=62.45 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~ 212 (484)
|.......+..+|++|.|+|+.++.+... ......+....++.|+|+|+||+||.+.. ...+..+.... .|.+
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~---- 136 (161)
T cd04124 62 FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLY---- 136 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEE----
Confidence 44444567889999999999998865322 12223333333578999999999996532 23343333222 2222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.+++.+....
T Consensus 137 ---------------------~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 137 ---------------------YVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234567788888888876543
No 289
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.53 E-value=9.5e-05 Score=70.28 Aligned_cols=70 Identities=11% Similarity=0.043 Sum_probs=40.6
Q ss_pred ecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 268 IGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 268 vG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
||.+|||||||++++...... ...++.|++-....+.++ -.+.|+||||-..... .....+++++.+..+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~---l~~~~~~~ad~~ilV 74 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGG---LRDGYYIQGQCAIIM 74 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhh---hhHHHhcCCCEEEEE
Confidence 699999999999999965432 123333443333334433 2578999999743211 112345555554433
No 290
>CHL00071 tufA elongation factor Tu
Probab=97.51 E-value=0.0007 Score=71.43 Aligned_cols=59 Identities=20% Similarity=0.201 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e~ 193 (484)
+.|++++...+..+|+++.|+||+..+......+..++... +.| +|+++||+|+++.+.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~ 145 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNKEDQVDDEE 145 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEccCCCCHHH
Confidence 46889999999999999999999987665444455555433 466 778999999997554
No 291
>PRK13351 elongation factor G; Reviewed
Probab=97.51 E-value=0.00024 Score=79.91 Aligned_cols=119 Identities=18% Similarity=0.279 Sum_probs=69.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc--cceecC---------------CCCeeeeeEEE--Ee-CCcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH--VANVGA---------------TPGLTRSMQEV--QL-DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~--~~~v~~---------------~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~ 321 (484)
-.+|+|||..|+|||||+++|.... ....+. ..|.|...... .+ +..+.|+||||.....
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 4689999999999999999998531 111111 12334332222 22 4578999999986431
Q ss_pred CCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
......++.++.+..+.|.... +...+.....+.+...|++|... +.+..+..+....+
T Consensus 88 ---~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~ 154 (687)
T PRK13351 88 ---GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFG 154 (687)
T ss_pred ---HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Confidence 2344566776665555444321 11223344556777889998664 44555555544433
No 292
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.50 E-value=0.00017 Score=73.22 Aligned_cols=59 Identities=24% Similarity=0.424 Sum_probs=40.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee----cCCCCeeee---eE--EEEeC-----CcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV----GATPGLTRS---MQ--EVQLD-----KNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v----~~~pg~Tr~---~~--~~~l~-----~~i~liDTPGi~~~ 320 (484)
.++|+++|-.|.||||+||+|.+..+... +..+..++. +. ...+. -++.++||||+...
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~ 95 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDF 95 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccc
Confidence 68999999999999999999999864332 122221111 11 12221 25889999999876
No 293
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.50 E-value=0.00022 Score=65.42 Aligned_cols=55 Identities=24% Similarity=0.156 Sum_probs=37.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~ 319 (484)
++|+++|.+|||||||++++.+... +...+.|+.+.. .+.++. .+.|+||||...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 60 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE 60 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChh
Confidence 4789999999999999999986543 333444443221 223332 577899999843
No 294
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.50 E-value=0.00016 Score=64.83 Aligned_cols=95 Identities=15% Similarity=0.199 Sum_probs=55.9
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCC-hHHHHHHhccccccccCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGE-NDASIALRNCKRIEKLDD 342 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~-~~~~~~L~~~~~i~~l~d 342 (484)
+|++||..++|||||+++|.+... ...-|..++ ... .+|||||=..-.+.- ......-..++.+..+.|
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~---~~~--~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIE---YYD--NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeE---ecc--cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 699999999999999999998653 122333333 222 349999976543211 112222345666655555
Q ss_pred CchhHH----HHHhhCCcchhhhhcCCCCC
Q 011507 343 PVGPVK----EILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 343 ~~~~v~----~il~~~~~~~l~~~~ki~~~ 368 (484)
...+.. .+..-..++.+-+..++|..
T Consensus 73 at~~~~~~pP~fa~~f~~pvIGVITK~Dl~ 102 (143)
T PF10662_consen 73 ATEPRSVFPPGFASMFNKPVIGVITKIDLP 102 (143)
T ss_pred CCCCCccCCchhhcccCCCEEEEEECccCc
Confidence 433211 22333455666677777765
No 295
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=97.50 E-value=0.00056 Score=62.00 Aligned_cols=83 Identities=16% Similarity=0.158 Sum_probs=51.3
Q ss_pred hcCEEEEEEecCCCCCCCCHH---HHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEEEEccchhhhhh
Q 011507 145 VSDVILEVLDARDPLGTRCID---MEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVAFKCSTQEQRAN 220 (484)
Q Consensus 145 ~sDvIleVlDARdPl~~r~~~---le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~-~~p~v~f~~~~~~~~~~ 220 (484)
.+|++|+|+|+.++.+..... +...+.....+.|+|+|+||+|+.+...+..-..+... ..+.+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~------------ 146 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVL------------ 146 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceE------------
Confidence 369999999999886532122 22233332236899999999999876554431122111 11221
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.|++.|..
T Consensus 147 -------------~~Sa~~~~gi~~l~~~l~~ 165 (168)
T cd01897 147 -------------KISTLTEEGVDEVKNKACE 165 (168)
T ss_pred -------------EEEecccCCHHHHHHHHHH
Confidence 3456788899999887754
No 296
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.49 E-value=0.00034 Score=65.21 Aligned_cols=93 Identities=16% Similarity=0.108 Sum_probs=55.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC----HH--HHHHHHHHHHhcCCeEEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP----RE--SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp----~e--~~~~wl~~l~~~~p~v~f 210 (484)
....+..+|+|+.|+|+.++.+... .+++.+ ....+....|||.||+||.. .+ .+..+...+.+.+....|
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~-~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQA-RGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLI 144 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEE
Confidence 3456788999999999998865433 233333 22222334478999999962 11 123333334334332222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.|++.|-..+-
T Consensus 145 -----------------------e~SAk~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 145 -----------------------FCSTSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3455677899999988776553
No 297
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.49 E-value=0.00013 Score=82.21 Aligned_cols=104 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc---------eecC------CCCeeeeeEEEE----e---CCcEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA---------NVGA------TPGLTRSMQEVQ----L---DKNVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~---------~v~~------~pg~Tr~~~~~~----l---~~~i~liDTPGi~~ 319 (484)
-.+|+|||..++|||||+++|....-. .+.+ ..|+|.....+. . +..+.|+||||...
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~~ 98 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHVD 98 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCccc
Confidence 468999999999999999999742100 0001 145555432211 1 34689999999975
Q ss_pred CCCCChHHHHHHhccccccccCCCchh----HHHHH---hhCCcchhhhhcCCCCC
Q 011507 320 LKSGENDASIALRNCKRIEKLDDPVGP----VKEIL---NRCPANLLISLYKLPSF 368 (484)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il---~~~~~~~l~~~~ki~~~ 368 (484)
.. ..+..+++.++.+..+.|.... ...++ .....+.+...||+|..
T Consensus 99 f~---~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 99 FG---GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRL 151 (720)
T ss_pred cH---HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcc
Confidence 32 3456677888776656554331 11222 22333456778998864
No 298
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=97.48 E-value=0.0011 Score=73.05 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRESV 194 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e~~ 194 (484)
..|.+++...+..+|++|.|+||.++......+...++... +.+ +|+|+||+|+++.+.+
T Consensus 61 e~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l--gi~~iIVVlNK~Dlv~~~~~ 121 (581)
T TIGR00475 61 EKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLL--GIPHTIVVITKADRVNEEEI 121 (581)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCCCCCHHHH
Confidence 45778888888999999999999986432222222233332 455 9999999999987643
No 299
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=97.47 E-value=0.00028 Score=64.79 Aligned_cols=90 Identities=14% Similarity=0.078 Sum_probs=53.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCC---HHHHHHHHHHHHh-cCCeEEEEc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVP---RESVEKWLKYLRE-ELPAVAFKC 212 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp---~e~~~~wl~~l~~-~~p~v~f~~ 212 (484)
...+..+|++|+|+|+.++.+... ..+.+.+... ..+.|++||.||+||.. .+.+..|+..-+. ..+...|
T Consensus 71 ~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~-- 148 (168)
T cd04149 71 RHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQ-- 148 (168)
T ss_pred HHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEE--
Confidence 446788999999999999854211 1222333211 13589999999999963 3444544421110 1111111
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|++.+++.|.+
T Consensus 149 ---------------------~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 149 ---------------------PSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred ---------------------EeeCCCCCChHHHHHHHhc
Confidence 3566788899988887743
No 300
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.47 E-value=0.00029 Score=65.21 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=36.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee-eE-EEEeCC---cEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQ-EVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~-~~-~~~l~~---~i~liDTPGi~~ 319 (484)
++|+|||.+|||||||++++..... ...+..|+.. .. .+.++. .+.|+||||--.
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f--~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 61 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQED 61 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCceeeeeEEEEEECCEEEEEEEEECCCccc
Confidence 6799999999999999999997653 1222222211 11 233332 577999999854
No 301
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=97.47 E-value=0.00036 Score=63.99 Aligned_cols=92 Identities=20% Similarity=0.133 Sum_probs=54.8
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc---CCeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE---LPAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~---~p~v~f~ 211 (484)
.....+..+|++++|+|+.++.+.. ...+..++.. ...+.|+++|+||+||...........++... ...+.+
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 152 (173)
T cd04154 74 YWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRI- 152 (173)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEE-
Confidence 3455678999999999999884321 1233333321 12478999999999997543223333333211 111222
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
...|+.++.|.+.+++.|.
T Consensus 153 ---------------------~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 153 ---------------------QPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ---------------------EeccCCCCcCHHHHHHHHh
Confidence 1345677788888887763
No 302
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=97.47 E-value=0.0003 Score=63.68 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=56.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhcC--C
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREEL--P 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~~--p 206 (484)
|.......+..+|++++|+|+.++.... ...+..++... ..+.|+++|+||+|+.+.. .+..|+..+.... .
T Consensus 63 ~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 142 (167)
T cd04160 63 LRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRR 142 (167)
T ss_pred hHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCC
Confidence 4444556788999999999998874211 11223332211 1368999999999997653 3334433221111 1
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
.+.+ ...|+.++.|.+.+++.|.
T Consensus 143 ~~~~----------------------~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 143 DCLV----------------------LPVSALEGTGVREGIEWLV 165 (167)
T ss_pred ceEE----------------------EEeeCCCCcCHHHHHHHHh
Confidence 1111 2456678889998888774
No 303
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=97.46 E-value=0.00052 Score=72.47 Aligned_cols=95 Identities=18% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC----HHHHHHHHHhC---CCCceeEEeeccCCCCH-HHHHHHHHHHHhcCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC----IDMEKMVMKAG---PDKHLVLLLNKIDLVPR-ESVEKWLKYLREELP 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~----~~le~~i~~~~---~~K~~IlVLNKiDLvp~-e~~~~wl~~l~~~~p 206 (484)
+..++.+-++.+|++|+|+|+.++.+... ..+.+.+.... .++|.|+|+||+||... +.+..+.+++. .+
T Consensus 226 Lg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~--~~ 303 (424)
T PRK12297 226 LGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLG--PK 303 (424)
T ss_pred HHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhC--Cc
Confidence 44556677889999999999964421111 11222232211 36899999999998533 23334433332 22
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+ .+|+.+..|.+.|++.|.++...
T Consensus 304 i~-------------------------~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 304 VF-------------------------PISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EE-------------------------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 22 34556778999999998876654
No 304
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.45 E-value=0.00031 Score=80.59 Aligned_cols=117 Identities=21% Similarity=0.242 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee---------------eeE--EEEe
Q 011507 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---------------SMQ--EVQL 305 (484)
Q Consensus 243 ~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr---------------~~~--~~~l 305 (484)
.+.+.+++.+ ...-.+|+|+|.+++|||||+++|+...-+......|.|+ ... ...+
T Consensus 6 ~~~~~~~~~~------~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~ 79 (843)
T PLN00116 6 AEELRRIMDK------KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYY 79 (843)
T ss_pred HHHHHHHhhC------ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEe
Confidence 3555555544 1234689999999999999999998543222223344443 111 1111
Q ss_pred -----------------CCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh----HHHHH---hhCCcchhhh
Q 011507 306 -----------------DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEIL---NRCPANLLIS 361 (484)
Q Consensus 306 -----------------~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il---~~~~~~~l~~ 361 (484)
+..+.|+||||...-. .++..+++.|+....+.|.... ...++ .....+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~---~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~ 156 (843)
T PLN00116 80 EMTDESLKDFKGERDGNEYLINLIDSPGHVDFS---SEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLT 156 (843)
T ss_pred ecccccccccccccCCCceEEEEECCCCHHHHH---HHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEE
Confidence 2357899999986441 2344556666555444443322 12222 2334456777
Q ss_pred hcCCCCC
Q 011507 362 LYKLPSF 368 (484)
Q Consensus 362 ~~ki~~~ 368 (484)
+|++|..
T Consensus 157 iNK~D~~ 163 (843)
T PLN00116 157 VNKMDRC 163 (843)
T ss_pred EECCccc
Confidence 8998865
No 305
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.45 E-value=0.00036 Score=76.82 Aligned_cols=102 Identities=15% Similarity=0.227 Sum_probs=62.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCcc-----cee----------cCCCCeeeeeEEE--Ee-CCcEEEEecCCCccCCCCCh
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHV-----ANV----------GATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSGEN 325 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~-----~~v----------~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~~~~ 325 (484)
+|+|||..++|||||+++|+...- ..+ ....|+|-..... .. +..+.|+||||..... .
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~---~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFG---G 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHH---H
Confidence 699999999999999999985311 001 1123566554332 22 4578999999975431 2
Q ss_pred HHHHHHhccccccccCCCch----hHH---HHHhhCCcchhhhhcCCCCC
Q 011507 326 DASIALRNCKRIEKLDDPVG----PVK---EILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 326 ~~~~~L~~~~~i~~l~d~~~----~v~---~il~~~~~~~l~~~~ki~~~ 368 (484)
.....++.++.+..+.|... ... ..+.....+.+...||+|..
T Consensus 80 ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~ 129 (594)
T TIGR01394 80 EVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRP 129 (594)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCC
Confidence 34456677776655555432 111 22333445667788999864
No 306
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.44 E-value=0.00058 Score=60.35 Aligned_cols=57 Identities=18% Similarity=0.073 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC-CCCceeEEeeccCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLV 189 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~-~~K~~IlVLNKiDLv 189 (484)
..+.......+.++|++|.|+|+.++-+... ......+.... .+.|+++|+||+|+.
T Consensus 60 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 60 ERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 3455567778889999999999998643211 11222222222 468999999999997
No 307
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=97.43 E-value=6.6e-05 Score=68.43 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=52.4
Q ss_pred hhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccchhhhhh
Q 011507 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRAN 220 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~~~~~~~ 220 (484)
-+..|+|+.|+||+.. .|+-.+-..+.+. ++|+|+|+||+|++.+..+.-..+.|.+. .|.++++
T Consensus 76 ~~~~D~ii~VvDa~~l--~r~l~l~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~s--------- 142 (156)
T PF02421_consen 76 SEKPDLIIVVVDATNL--ERNLYLTLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVS--------- 142 (156)
T ss_dssp HTSSSEEEEEEEGGGH--HHHHHHHHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEB---------
T ss_pred hcCCCEEEEECCCCCH--HHHHHHHHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEE---------
Confidence 3789999999999974 4555555555554 69999999999998765322122233332 4666553
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHH
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLL 250 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~L 250 (484)
+....|.+.|++.+
T Consensus 143 ----------------a~~~~g~~~L~~~I 156 (156)
T PF02421_consen 143 ----------------ARTGEGIDELKDAI 156 (156)
T ss_dssp ----------------TTTTBTHHHHHHHH
T ss_pred ----------------eCCCcCHHHHHhhC
Confidence 45667888887653
No 308
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=97.43 E-value=0.00041 Score=62.26 Aligned_cols=93 Identities=15% Similarity=0.038 Sum_probs=55.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~~p~v~f~ 211 (484)
.....+..+|++++|+|+.+|-+.. ...+..++... ..+.|+++|+||+|+.... .+..++.........+.+
T Consensus 59 ~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (158)
T cd00878 59 LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHI- 137 (158)
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEE-
Confidence 4455778899999999999874221 12233333211 2468999999999998644 333332221101111222
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
...|+.++.|.+.+++.|..
T Consensus 138 ---------------------~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 138 ---------------------QPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred ---------------------EEeeCCCCCCHHHHHHHHhh
Confidence 13456677899988887754
No 309
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=97.42 E-value=0.00058 Score=61.96 Aligned_cols=56 Identities=25% Similarity=0.270 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHh----CCCCceeEEeeccCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKA----GPDKHLVLLLNKIDLV 189 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~----~~~K~~IlVLNKiDLv 189 (484)
.|.......+..+|++|+|+|+.+|.+.... ....++... ..+.|+++|+||+|+.
T Consensus 61 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 122 (172)
T cd01862 61 RFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLE 122 (172)
T ss_pred HHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccc
Confidence 3444455678889999999999988542211 122222222 1268999999999998
No 310
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.41 E-value=0.00038 Score=64.34 Aligned_cols=54 Identities=28% Similarity=0.276 Sum_probs=34.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeC---CcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLD---KNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~---~~i~liDTPGi~ 318 (484)
++|+|+|.+||||||||.++...... .....++... ..+.++ -.+.|+||||-.
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 60 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE 60 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC--CcCCCcceeeeEEEEEECCEEEEEEEEECCCch
Confidence 57999999999999999999865421 1111111111 112233 257899999953
No 311
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.40 E-value=0.00055 Score=64.09 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEE
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~-~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f 210 (484)
.|.......+..+|++|.|+|+.++.+..+ ......+.... .+.|+++|+||+||.... ....+...+.+.+....+
T Consensus 62 ~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~ 141 (191)
T cd04112 62 RFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFM 141 (191)
T ss_pred HHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEE
Confidence 454445567788999999999988743211 11112222222 367899999999997432 222233333333322112
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
..|+..+.|++.|+..|.+.+...
T Consensus 142 -----------------------e~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 142 -----------------------ETSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHHHHHHh
Confidence 234567789999999998776544
No 312
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.40 E-value=0.00064 Score=61.68 Aligned_cols=96 Identities=14% Similarity=0.074 Sum_probs=60.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCC-CHHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEE
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r-~~~le~~i~~~~-~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f 210 (484)
.|.......+..+|+++.|+|++++.+.. .+.....+.... .+.|.++|.||+|+.+.. ........+.+......+
T Consensus 68 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~ 147 (169)
T cd04114 68 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYL 147 (169)
T ss_pred HHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEE
Confidence 45566677889999999999998874421 122222333322 257789999999997543 233444555554433223
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.+++.+..
T Consensus 148 -----------------------~~Sa~~~~gv~~l~~~i~~ 166 (169)
T cd04114 148 -----------------------ETSAKESDNVEKLFLDLAC 166 (169)
T ss_pred -----------------------EeeCCCCCCHHHHHHHHHH
Confidence 2344566788888887764
No 313
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=97.40 E-value=0.00037 Score=64.94 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=56.0
Q ss_pred HHHHhhhcCEEEEEEecCCCCCC--CCHHHHHHHHH-hCCCCceeEEeeccCCC---CHHHHHHHHHHHHhcCCeEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMK-AGPDKHLVLLLNKIDLV---PRESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~--r~~~le~~i~~-~~~~K~~IlVLNKiDLv---p~e~~~~wl~~l~~~~p~v~f~~ 212 (484)
....+..+|.||+|+|+.+|-.. ....+.+++.. ...+.|+|+|+||+|+. +.+.+..++....... .+
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~-----~~ 152 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTG-----SK 152 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccc-----cc
Confidence 34567899999999999988322 11233333321 11468999999999994 4444444432111000 00
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.. .+. ........|+..+.|.+.+++.|.+
T Consensus 153 ~~------~~~----~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 153 GK------VGV----RPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cc------cCC----ceeEEEEeecccCCChHHHHHHHHh
Confidence 00 000 0001235667788899999998865
No 314
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.40 E-value=0.00062 Score=63.03 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.1
Q ss_pred hcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHh
Q 011507 145 VSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLRE 203 (484)
Q Consensus 145 ~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~ 203 (484)
.+|++|+|+|++.++......+.+++.. .++|+++|+||+|+++.+. +..+.+.+..
T Consensus 100 ~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~ 160 (179)
T TIGR03598 100 NLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKK 160 (179)
T ss_pred hhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhh
Confidence 4689999999999887766666666654 3689999999999987543 3444455544
No 315
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=97.40 E-value=0.001 Score=63.46 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=40.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.|..++...+..+|++|.|+|+.++.......+..++... +.+++|+|+||+|+++
T Consensus 89 ~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~D~~~ 144 (208)
T cd04166 89 QYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKMDLVD 144 (208)
T ss_pred HHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEchhccc
Confidence 4666777788999999999999988654443333444332 2345788999999985
No 316
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=97.40 E-value=0.0005 Score=61.92 Aligned_cols=91 Identities=15% Similarity=0.032 Sum_probs=54.5
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-C--eEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-P--AVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p--~v~f~~ 212 (484)
....+..+|++|+|+|+.++.+.. ...+..++... ..++|+++|+||+|+...........++.... + ...
T Consensus 60 ~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~--- 136 (158)
T cd04151 60 WRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWS--- 136 (158)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEE---
Confidence 345688999999999998873211 12222232221 13689999999999975432333333332111 0 011
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
...+|+.++.|.+.+++.|.
T Consensus 137 -------------------~~~~Sa~~~~gi~~l~~~l~ 156 (158)
T cd04151 137 -------------------IFKTSAIKGEGLDEGMDWLV 156 (158)
T ss_pred -------------------EEEeeccCCCCHHHHHHHHh
Confidence 12566778899999988774
No 317
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.39 E-value=0.0004 Score=66.30 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=37.4
Q ss_pred cceEEEEecCCCCchhHHHHHhh-cCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK-RCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~-~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+++|.+|||||||+|.+. +.......++.|+......+..+. .+.++||||-.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 45899999999999999997654 432222334444444333333332 57789999964
No 318
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=97.37 E-value=0.00064 Score=61.34 Aligned_cols=93 Identities=18% Similarity=0.155 Sum_probs=55.8
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHhCCCCceeEEeeccCCCCHHHHH-HHHHHHHhcCCeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKAGPDKHLVLLLNKIDLVPRESVE-KWLKYLREELPAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~~~~~K~~IlVLNKiDLvp~e~~~-~wl~~l~~~~p~v~f 210 (484)
+..-....+..+|++++|.|+.++.+. ..++.++ .....+.|+|+|.||+|+.+...+. .....+...+....|
T Consensus 65 ~~~~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04101 65 YSDMVSNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFF 142 (164)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEE
Confidence 333456678899999999999887432 1233332 2222468999999999997653221 111222222222122
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.+++.|..
T Consensus 143 -----------------------~~Sa~~~~gi~~l~~~l~~ 161 (164)
T cd04101 143 -----------------------KTSALRGVGYEEPFESLAR 161 (164)
T ss_pred -----------------------EEeCCCCCChHHHHHHHHH
Confidence 2345677888999887765
No 319
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.37 E-value=0.00062 Score=67.57 Aligned_cols=127 Identities=17% Similarity=0.148 Sum_probs=81.6
Q ss_pred cchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeE
Q 011507 130 NSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAV 208 (484)
Q Consensus 130 ~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v 208 (484)
.....+.+..|.++..||+|+.|+||.+|-...++.+.+.+... .+-|-|||+||+|.++... +......|.+---+.
T Consensus 140 ~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~ 218 (379)
T KOG1423|consen 140 HLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK 218 (379)
T ss_pred HHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccch
Confidence 33445667889999999999999999987666778777776553 4678899999999987543 222222222110000
Q ss_pred -------EE--EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccc
Q 011507 209 -------AF--KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIK 260 (484)
Q Consensus 209 -------~f--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~ 260 (484)
.| .-++...++..||.+ -+..+++|+..+.|++.|.++|-..++.++.+
T Consensus 219 ~kl~v~~~f~~~p~~~~~~~~~gwsh---fe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~ 276 (379)
T KOG1423|consen 219 LKLEVQEKFTDVPSDEKWRTICGWSH---FERVFMVSALYGEGIKDLKQYLMSQAPPGPWK 276 (379)
T ss_pred hhhhHHHHhccCCcccccccccCccc---ceeEEEEecccccCHHHHHHHHHhcCCCCCCC
Confidence 00 000011112223322 12467889999999999999998888877765
No 320
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.37 E-value=0.00044 Score=62.25 Aligned_cols=55 Identities=33% Similarity=0.441 Sum_probs=37.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
+|+|+|-++||||||++++.+..... ..++.|.......+..+. .+.|+||||-.
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 59 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQE 59 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSG
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999865321 222333433333444432 58899999953
No 321
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.36 E-value=0.00026 Score=74.58 Aligned_cols=104 Identities=17% Similarity=0.166 Sum_probs=58.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce--------------ecC------------------CCCeeeeeEEEEe---CC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN--------------VGA------------------TPGLTRSMQEVQL---DK 307 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~--------------v~~------------------~pg~Tr~~~~~~l---~~ 307 (484)
++|+++|.+++|||||+++|+..--.. .+. ..|+|.+.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 479999999999999999997331100 111 1355666554333 34
Q ss_pred cEEEEecCCCccCCCCChHHHHHHhccccccccCCCch-------hHHHHHhhCCc-chhhhhcCCCCCC
Q 011507 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-------PVKEILNRCPA-NLLISLYKLPSFD 369 (484)
Q Consensus 308 ~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~-------~v~~il~~~~~-~~l~~~~ki~~~~ 369 (484)
++.|+||||...- .......+..++.+..+.|... ....++..... ..+..+||+|...
T Consensus 81 ~~~liDtPGh~~f---~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 81 KFIVADTPGHEQY---TRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred EEEEEeCCCHHHH---HHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 7899999995421 0112234455554444444321 11233344333 3456789998654
No 322
>PRK04213 GTP-binding protein; Provisional
Probab=97.36 E-value=0.0014 Score=61.58 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=54.8
Q ss_pred HhhhcCEEEEEEecCCCCCCC-----------CHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeE
Q 011507 142 VIEVSDVILEVLDARDPLGTR-----------CIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAV 208 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r-----------~~~le~~i~~~~~~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p~v 208 (484)
.++.+|+|+.|+|+.+..... ...+...+.. .+.|+|+|+||+||.+.. ....|...+.-..+..
T Consensus 87 ~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 164 (201)
T PRK04213 87 NADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWR 164 (201)
T ss_pred hhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcHHHHHHHHHHHhcCCcccc
Confidence 566789999999997643211 1123333332 368999999999998654 3444544443110100
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+ ......+|+.++ |.+.|++.|.+...
T Consensus 165 ~~------------------~~~~~~~SA~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 165 QW------------------QDIIAPISAKKG-GIEELKEAIRKRLH 192 (201)
T ss_pred cc------------------CCcEEEEecccC-CHHHHHHHHHHhhc
Confidence 00 000124566788 99999998876543
No 323
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.36 E-value=0.00015 Score=73.98 Aligned_cols=59 Identities=27% Similarity=0.390 Sum_probs=39.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee------cCCCCeeeeeEE--EEeC-----CcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV------GATPGLTRSMQE--VQLD-----KNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v------~~~pg~Tr~~~~--~~l~-----~~i~liDTPGi~~~ 320 (484)
.++++++|-.+.|||||||+|....+..- ...|--|..+.. +.+. -++.++||||+...
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 58999999999999999999998754321 112222333222 2222 25788999999865
No 324
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.36 E-value=0.00031 Score=68.97 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=36.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+|+|.+|||||||||++.+.... ....+|+.+ ...+.++. .+.|+||+|..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~--~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~ 59 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFE--EQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNH 59 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCC--CCCCCChhHhEEEEEEECCEEEEEEEEECCCCh
Confidence 36999999999999999999866532 122233322 12234433 56799999964
No 325
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.36 E-value=0.0022 Score=57.83 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=54.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
...+..+|+++.|+|+.++...........+.. .++|+++|+||+|+.... ...+...+....- .....
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~-~~~~~------- 136 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDKPNAN-PERVKNELSELGL-QGEDE------- 136 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceeccccc-HHHHHHHHHHhhc-ccccc-------
Confidence 345678999999999998653222222333433 468999999999997532 1112222211100 00000
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
+. ........|+..+.|.+.|++.|..+.
T Consensus 137 ---~~---~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 137 ---WG---GDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ---cc---CcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 00 000122456677889999999887654
No 326
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.36 E-value=0.00083 Score=60.88 Aligned_cols=97 Identities=15% Similarity=0.042 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCC-CHHHHHHHHHh-CCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEE
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r-~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f 210 (484)
.|.......+..+|+++.|+|+.+|.+.. .......+... ..+.|+|+|.||+||.... ........+.+.+....+
T Consensus 64 ~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 143 (165)
T cd01864 64 RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAV 143 (165)
T ss_pred HHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEE
Confidence 34444566778899999999999985422 12222333332 2467899999999997542 111122222223222111
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
...|+.++.|.+.+++.+..
T Consensus 144 ----------------------~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 144 ----------------------LETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred ----------------------EEEECCCCCCHHHHHHHHHH
Confidence 13445677888888887754
No 327
>PRK12736 elongation factor Tu; Reviewed
Probab=97.35 E-value=0.0027 Score=66.72 Aligned_cols=58 Identities=24% Similarity=0.269 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRE 192 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e 192 (484)
+.|..+....+..+|++|.|+||.+...........++... +.| +|+++||+|+++.+
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~D~~~~~ 144 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKVDLVDDE 144 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEecCCcchH
Confidence 46778888888999999999999987655555555555443 466 67899999999654
No 328
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=97.35 E-value=0.00063 Score=72.63 Aligned_cols=84 Identities=26% Similarity=0.374 Sum_probs=57.0
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchh
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
+..+..+..+|+||+|+|+.+|.+.... ..+.. ..++|+|+|+||+||.+..... .....+.+
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~---~~l~~-~~~~piiiV~NK~DL~~~~~~~-----~~~~~~~i-------- 348 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDD---EILEE-LKDKPVIVVLNKADLTGEIDLE-----EENGKPVI-------- 348 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHH---HHHHh-cCCCCcEEEEEhhhccccchhh-----hccCCceE--------
Confidence 3456678999999999999998765432 22222 3478999999999998754332 11112222
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.+|+.++.|.+.|++.|....
T Consensus 349 -----------------~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 349 -----------------RISAKTGEGIDELREAIKELA 369 (449)
T ss_pred -----------------EEEeeCCCCHHHHHHHHHHHH
Confidence 345567789999999987754
No 329
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=97.33 E-value=0.00082 Score=62.50 Aligned_cols=93 Identities=18% Similarity=0.083 Sum_probs=53.0
Q ss_pred HHHhhhcCEEEEEEecCCCCCC--CCHHHHHHHHH-hCCCCceeEEeeccCCCCH---HHHHHHHHHHHh-cCCeEEEEc
Q 011507 140 VKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMK-AGPDKHLVLLLNKIDLVPR---ESVEKWLKYLRE-ELPAVAFKC 212 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~--r~~~le~~i~~-~~~~K~~IlVLNKiDLvp~---e~~~~wl~~l~~-~~p~v~f~~ 212 (484)
...+..+|++|+|+|+.++-.. ....+..+... ...++|+|+|+||+|+.+. +.+..++.+-.. ......+
T Consensus 70 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 147 (183)
T cd04152 70 KSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHV-- 147 (183)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEE--
Confidence 3446789999999999987321 11122222211 1236899999999999642 333333321100 0011111
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..+|+.++.|.+.|++.|.+..
T Consensus 148 --------------------~~~SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 148 --------------------QPACAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred --------------------EEeecccCCCHHHHHHHHHHHH
Confidence 1456678889998888876544
No 330
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.33 E-value=0.00051 Score=64.04 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=36.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.+|||||||++++.+..... ..++-|..-....+.++. .+.++||+|--
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~ 60 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQR 60 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCch
Confidence 479999999999999999998765321 222223222222344433 57889999964
No 331
>PRK00049 elongation factor Tu; Reviewed
Probab=97.33 E-value=0.0013 Score=69.01 Aligned_cols=59 Identities=19% Similarity=0.214 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCcee-EEeeccCCCCHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLV-LLLNKIDLVPRES 193 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~I-lVLNKiDLvp~e~ 193 (484)
+.|..++...+..+|+++.|+||+.+.......+..++... +.|.+ +++||+|+++.+.
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~ 145 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDEE 145 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc--CCCEEEEEEeecCCcchHH
Confidence 46888999999999999999999988665444455555543 57765 5899999996543
No 332
>PRK11058 GTPase HflX; Provisional
Probab=97.32 E-value=0.0012 Score=70.00 Aligned_cols=91 Identities=19% Similarity=0.220 Sum_probs=57.4
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchh
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~~-~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
..+.+..+|+||.|+|+.+|...... .+.+.+.... .++|+|+|+||+||++.... ........+|.. +
T Consensus 270 tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~~~~~~~~~-v------ 340 (426)
T PRK11058 270 TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDRDEENKPIR-V------ 340 (426)
T ss_pred HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHHHhcCCCce-E------
Confidence 34556789999999999998654332 1234444332 36899999999999864221 111111122321 1
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.....
T Consensus 341 -----------------~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 341 -----------------WLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred -----------------EEeCCCCCCHHHHHHHHHHHhh
Confidence 2456778899999999987664
No 333
>PTZ00099 rab6; Provisional
Probab=97.31 E-value=0.0007 Score=62.91 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=57.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEEEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~l~~~~p~v~f~ 211 (484)
....+..+|++|+|+|+.++.+.. ..++..++.....+.|+|||.||+||.. .+....|.. .+....|
T Consensus 46 ~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~~~~~----~~~~~~~- 120 (176)
T PTZ00099 46 IPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQ----EYNTMFH- 120 (176)
T ss_pred cHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHHHHHH----HcCCEEE-
Confidence 344568999999999998875432 2344444433334678899999999963 222333322 2222222
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
..|+.++.|++.+++.|.+.++.
T Consensus 121 ----------------------e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 121 ----------------------ETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred ----------------------EEECCCCCCHHHHHHHHHHHHHh
Confidence 24556778999999988876654
No 334
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=97.29 E-value=0.00095 Score=59.95 Aligned_cols=93 Identities=19% Similarity=0.159 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---H-hCCCCceeEEeeccCCCCH-----HHHHHHHHHHHh
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---K-AGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLRE 203 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~-~~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~ 203 (484)
..+.......+..+|++|.|+|+++|.+. ..+..++. . ..++.|+++|.||+|+.+. +....|...+
T Consensus 60 ~~~~~~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~-- 135 (164)
T smart00175 60 ERFRSITSSYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEH-- 135 (164)
T ss_pred HHHHHHHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHc--
Confidence 34555667778899999999999987653 22322222 1 2257899999999999753 2334443321
Q ss_pred cCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 204 ELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 204 ~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.++. + ..|+..+.|.+.+++.|.+..
T Consensus 136 ~~~~--~-----------------------e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 136 GLPF--F-----------------------ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCeE--E-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 1232 2 234456678888888876643
No 335
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.27 E-value=0.00067 Score=63.05 Aligned_cols=55 Identities=18% Similarity=0.315 Sum_probs=35.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|-+|||||||++++.+.... ..-.|.+.... ..+.++. .+.|+||||--
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~ 60 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSP 60 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCch
Confidence 57999999999999999999976531 11112111111 1233332 47799999963
No 336
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=97.27 E-value=0.00067 Score=62.08 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHhhhcCEEEEEEecCCCCCC--CCHHHHHHHHHh-CCCCceeEEeeccCCCCH---HHHHHHHHHHHhcCC-eEEEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMKA-GPDKHLVLLLNKIDLVPR---ESVEKWLKYLREELP-AVAFK 211 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~--r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~---e~~~~wl~~l~~~~p-~v~f~ 211 (484)
....+..+|.+++|+|+.+|.+. ...++..++... ..+.|+++|.||+||.+. +.+..++.+...... .+.|
T Consensus 60 ~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (169)
T cd04158 60 WKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYI- 138 (169)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEE-
Confidence 34556789999999999987422 122333343221 134789999999999643 334444322111011 1122
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...|+.++.|++.+++.|.+...
T Consensus 139 ---------------------~~~Sa~~g~gv~~~f~~l~~~~~ 161 (169)
T cd04158 139 ---------------------QGCDARSGMGLYEGLDWLSRQLV 161 (169)
T ss_pred ---------------------EeCcCCCCCCHHHHHHHHHHHHh
Confidence 13466788899999988876444
No 337
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.27 E-value=0.00074 Score=64.59 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=54.7
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHhC----CCCceeEEeeccCCCCH-HHHHHHHHHHHhcCCeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAG----PDKHLVLLLNKIDLVPR-ESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~~----~~K~~IlVLNKiDLvp~-e~~~~wl~~l~~~~p~v~f~ 211 (484)
-....+..+|+||+|+|+.+|.+...- .....+.... .+.|+|+|.||+||... .........+.+.+....|
T Consensus 66 l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~- 144 (215)
T cd04109 66 MLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESC- 144 (215)
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEE-
Confidence 344557789999999999998553221 1122222221 23468899999999742 2211122222233332122
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|++.+++.|.+.+.
T Consensus 145 ----------------------~iSAktg~gv~~lf~~l~~~l~ 166 (215)
T cd04109 145 ----------------------LVSAKTGDRVNLLFQQLAAELL 166 (215)
T ss_pred ----------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 2455677899999988876543
No 338
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=97.25 E-value=0.0027 Score=56.64 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=58.7
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCeEEEEccch
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPAVAFKCSTQ 215 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~----~p~v~f~~~~~ 215 (484)
...-+.++.++.|+|+..+.......+.+.+... +.|+++|+||+|+...+........+... .+...+
T Consensus 76 ~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 148 (170)
T cd01876 76 LENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPI----- 148 (170)
T ss_pred HHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCce-----
Confidence 3444567899999999988765555566666543 57899999999998766544333333221 111111
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.+.|+.+..|.+.+++.|..+
T Consensus 149 -----------------~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 149 -----------------ILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred -----------------EEEecCCCCCHHHHHHHHHHh
Confidence 134456777889999888764
No 339
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.25 E-value=0.00036 Score=74.02 Aligned_cols=58 Identities=29% Similarity=0.429 Sum_probs=42.0
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccc--------------e----------------ecCCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVA--------------N----------------VGATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~--------------~----------------v~~~pg~Tr~~~~~~l---~ 306 (484)
+..++|+++|.+++|||||+++|+...-+ . .....|+|.+.....+ +
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 35689999999999999999999842110 0 0124588888766544 3
Q ss_pred CcEEEEecCCC
Q 011507 307 KNVKLLDCPGV 317 (484)
Q Consensus 307 ~~i~liDTPGi 317 (484)
..+.|+||||.
T Consensus 85 ~~i~iiDtpGh 95 (426)
T TIGR00483 85 YEVTIVDCPGH 95 (426)
T ss_pred eEEEEEECCCH
Confidence 46899999994
No 340
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.24 E-value=0.00066 Score=63.31 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=34.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee-eEEEEeC---CcEEEEecCCCcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS-MQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~-~~~~~l~---~~i~liDTPGi~~ 319 (484)
.+|+|+|.+|||||||+|.|....... ...|.+... ...+.++ -.+.++||||...
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 61 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEE 61 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChh
Confidence 479999999999999999998543221 111211111 1122332 2467899999643
No 341
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.23 E-value=0.0005 Score=63.67 Aligned_cols=79 Identities=23% Similarity=0.323 Sum_probs=53.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
+..+|.++|.+|+||||+++.|.......+.++-|..- ..+.. +..+.++|.+|=..... .....+.+++.+.+
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~~~~~~~~d~gG~~~~~~---~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYKGYSLTIWDLGGQESFRP---LWKSYFQNADGIIF 87 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEETTEEEEEEEESSSGGGGG---GGGGGHTTESEEEE
T ss_pred cEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeCcEEEEEEeccccccccc---cceeeccccceeEE
Confidence 56899999999999999999999877655555555443 33333 34789999999632211 11124556777766
Q ss_pred cCCCc
Q 011507 340 LDDPV 344 (484)
Q Consensus 340 l~d~~ 344 (484)
+.|..
T Consensus 88 VvDss 92 (175)
T PF00025_consen 88 VVDSS 92 (175)
T ss_dssp EEETT
T ss_pred EEecc
Confidence 66654
No 342
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=97.23 E-value=0.001 Score=60.25 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHH-hCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~-~~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|+|+.++.+.. ...+.+++.. ...+.|++||.||+||.+
T Consensus 57 ~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 57 IRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 3334455678999999999998764321 1123333221 113589999999999964
No 343
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.22 E-value=0.00083 Score=63.21 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=37.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.++||||||++++...... ...+++|..-....+.++. .+.|+||||--.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHH
Confidence 3588999999999999999999975431 1112223221112233333 577899999743
No 344
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.21 E-value=0.00075 Score=64.25 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=46.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
.|.++|.+||||||||+.+....... ..++.|..-....+.++ -.+.|+||+|-.... ......+++++.+..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~---~l~~~y~~~ad~iIl 78 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFN---SITSAYYRSAKGIIL 78 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhH---HHHHHHhcCCCEEEE
Confidence 58999999999999999999765421 11222322222234444 356899999974321 122345667776655
Q ss_pred cCC
Q 011507 340 LDD 342 (484)
Q Consensus 340 l~d 342 (484)
+.|
T Consensus 79 VfD 81 (202)
T cd04120 79 VYD 81 (202)
T ss_pred EEE
Confidence 544
No 345
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=97.21 E-value=0.0015 Score=62.82 Aligned_cols=57 Identities=25% Similarity=0.236 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCC----CCCHH---HHHHHHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLG----TRCID---MEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~----~r~~~---le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
+.|+.++...+..+|++|+|+||.++.. ....+ ...+... .+.+|+|+|+||+|+++
T Consensus 88 ~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 88 RDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LGVKQLIVAVNKMDDVT 151 (219)
T ss_pred HHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cCCCeEEEEEEcccccc
Confidence 4577778888889999999999998621 11222 2222222 23478899999999983
No 346
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=97.20 E-value=0.0012 Score=60.79 Aligned_cols=56 Identities=21% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|+|+.++.+.. ...+.+++... ..+.|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 72 LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 3333445678999999999999874321 11233333221 13589999999999964
No 347
>PRK12735 elongation factor Tu; Reviewed
Probab=97.20 E-value=0.0028 Score=66.55 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCcee-EEeeccCCCCHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLV-LLLNKIDLVPRE 192 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~I-lVLNKiDLvp~e 192 (484)
+.|.+++...+..+|+++.|+||.+...........++.. .+.|.| +|+||+||++.+
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvNK~Dl~~~~ 144 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNKCDMVDDE 144 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEEecCCcchH
Confidence 4688899999999999999999998544333233333332 256755 579999999654
No 348
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=97.19 E-value=0.00096 Score=61.57 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=34.6
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCC
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp 190 (484)
....+..+|+||+|+|+.+|.+.. ...+..++... ..+.|+++|+||+||..
T Consensus 74 ~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 74 WRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 344578999999999999874321 12233333221 13579999999999964
No 349
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=97.19 E-value=0.0016 Score=59.41 Aligned_cols=55 Identities=16% Similarity=0.102 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---H-hCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---K-AGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~-~~~~K~~IlVLNKiDLvp 190 (484)
.|.......++.+|.+|.|+|+.+|.+. ..+..++. . ..++.|+|+|.||+|+.+
T Consensus 65 ~~~~~~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 65 SFRSITRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 4555567788899999999999987543 23333332 2 224689999999999984
No 350
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.18 E-value=0.00068 Score=76.74 Aligned_cols=105 Identities=20% Similarity=0.263 Sum_probs=60.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC---------------CeeeeeEE--EEe-----CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP---------------GLTRSMQE--VQL-----DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p---------------g~Tr~~~~--~~l-----~~~i~liDTPGi~ 318 (484)
.-.+|+|+|..++|||||+.+|....-+...... |+|..... +.+ +..+.|+||||..
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 3467999999999999999999853211111112 23322211 111 3468899999997
Q ss_pred cCCCCChHHHHHHhccccccccCCCchh----HHHHHh---hCCcchhhhhcCCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVGP----VKEILN---RCPANLLISLYKLPSF 368 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il~---~~~~~~l~~~~ki~~~ 368 (484)
.. ...+..+++.++.+..+.|.... ...++. ....+.+..+||+|..
T Consensus 99 df---~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DF---GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRL 152 (731)
T ss_pred Ch---HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhh
Confidence 64 23455667777665555443221 122222 2233456778998854
No 351
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=97.17 E-value=0.0016 Score=58.54 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHhC-----CCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKAG-----PDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~~-----~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|+|+++|.+.. ..++..+..... .+.|+|+|.||+|+.+
T Consensus 62 ~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 62 YLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 3344455678899999999999884321 122222222111 3578999999999973
No 352
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.16 E-value=0.0038 Score=69.64 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
+.|.+++...+..+|++|.|+||..+..........++... +.+++|+|+||+|+++
T Consensus 115 ~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 115 EQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNKMDLVD 171 (632)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEeccccc
Confidence 35677777889999999999999988765554444444433 3467889999999985
No 353
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.16 E-value=0.00074 Score=72.00 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=60.8
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCc--cc------------eec----------------CCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCH--VA------------NVG----------------ATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~--~~------------~v~----------------~~pg~Tr~~~~~~l---~ 306 (484)
++.++|+++|..++|||||+.+|+..- +. .++ ...|+|.+.....+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 456899999999999999999997411 00 001 13477777655443 3
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh--------------HHHHHhhCCcc-hhhhhcCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP--------------VKEILNRCPAN-LLISLYKLP 366 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~--------------v~~il~~~~~~-~l~~~~ki~ 366 (484)
..+.|+||||.... .......+..++.+..+.|.... ...++.....+ .+..+|++|
T Consensus 85 ~~i~lIDtPGh~~f---~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 YYFTIIDAPGHRDF---IKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred eEEEEEECCChHHH---HHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 46899999995322 11222334455544444443221 12234444544 456889998
No 354
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.14 E-value=0.0014 Score=58.00 Aligned_cols=96 Identities=18% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v 208 (484)
|.......+..+|+++.|+|+.++..... ..+..++... ..++|+++|+||+|+.+......+...+.... ..+
T Consensus 57 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 136 (159)
T cd04159 57 FRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREV 136 (159)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCce
Confidence 44455667889999999999998643211 1222222111 13689999999999987655444444442110 001
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.+ ...|+.++.|.+.+++.|..
T Consensus 137 ~~----------------------~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 137 SC----------------------YSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EE----------------------EEEEeccCCChHHHHHHHhh
Confidence 11 13455677888888887753
No 355
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.14 E-value=0.0014 Score=62.12 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=38.1
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh----CCCCceeEEeeccCCCCH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~----~~~K~~IlVLNKiDLvp~ 191 (484)
.+.......+..+|++|.|+|+.+|.+... ..+.+.+... ..+.|+|+|.||+||...
T Consensus 69 e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 69 EWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 344444556789999999999998854321 1122222221 246899999999999553
No 356
>COG0218 Predicted GTPase [General function prediction only]
Probab=97.10 E-value=0.0043 Score=58.42 Aligned_cols=101 Identities=17% Similarity=0.253 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHhhh---cCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----
Q 011507 132 DRAFYKELVKVIEV---SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE---- 204 (484)
Q Consensus 132 ~k~~~~el~kvie~---sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~---- 204 (484)
++.+-+.+...|+. -..++.|+|+|.|+.-.+.++.+++... +.|+++|+||+|-++.....+-+...++.
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~ 167 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKP 167 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCC
Confidence 34444555555553 5679999999999998888888888764 78999999999999977655445555432
Q ss_pred CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 205 ~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
++.... ..+.|+....|.+.|...|..++.
T Consensus 168 ~~~~~~---------------------~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 168 PPDDQW---------------------VVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred CCccce---------------------EEEEecccccCHHHHHHHHHHHhh
Confidence 221100 113345677899999999887764
No 357
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.06 E-value=0.0017 Score=60.33 Aligned_cols=105 Identities=18% Similarity=0.174 Sum_probs=57.4
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCC--CCHHHHHHHHHh-CCCCceeEEeeccCCCC---HHHHHHHHHHHHhcCC-eEE
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGT--RCIDMEKMVMKA-GPDKHLVLLLNKIDLVP---RESVEKWLKYLREELP-AVA 209 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~--r~~~le~~i~~~-~~~K~~IlVLNKiDLvp---~e~~~~wl~~l~~~~p-~v~ 209 (484)
......+..+|.+++|+|+.++-+. ....++..+... ..+.|+++|+||+||.. .+.+..++...+...- .+.
T Consensus 78 ~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 78 RLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred HHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccc
Confidence 3345567899999999999987321 123344433211 13589999999999963 3344444322110000 000
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
+.. .. ...-.....|+.++.|.+.+++.|.++
T Consensus 158 ~~~-------~~-----~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 158 LKV-------SG-----IRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ccc-------cC-----ceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 000 00 000011245678889999999988654
No 358
>PRK12740 elongation factor G; Reviewed
Probab=97.05 E-value=0.0013 Score=73.90 Aligned_cols=113 Identities=19% Similarity=0.269 Sum_probs=64.4
Q ss_pred ecCCCCchhHHHHHhhcCccc--eecC---------------CCCeeeeeEEEE--e-CCcEEEEecCCCccCCCCChHH
Q 011507 268 IGLPNVGKSSLINSLKRCHVA--NVGA---------------TPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGENDA 327 (484)
Q Consensus 268 vG~pNvGKSSLIN~L~~~~~~--~v~~---------------~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~~~~ 327 (484)
||.+|+|||||+|+|....-+ ..+. .+|.|....... . +..+.|+||||.... ....
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~---~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDF---TGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHH---HHHH
Confidence 699999999999999543211 1111 245554433222 2 457999999998642 1234
Q ss_pred HHHHhccccccccCCCchhH----HH---HHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 328 SIALRNCKRIEKLDDPVGPV----KE---ILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 328 ~~~L~~~~~i~~l~d~~~~v----~~---il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
...+..++.+..+.|+.... .. .+.....+.+..+|++|... +..+.+..+....|
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~ 141 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLG 141 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
Confidence 44566676665555543321 11 22233456677889988653 34555555655443
No 359
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.05 E-value=0.0013 Score=62.63 Aligned_cols=56 Identities=30% Similarity=0.346 Sum_probs=36.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC------C--cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD------K--NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~------~--~i~liDTPGi~ 318 (484)
++|.++|-++||||||++.+.+..... ..++.|++-....+.++ . .+.|+||+|-.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e 65 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSE 65 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCch
Confidence 479999999999999999999865321 22223332222223331 1 47899999974
No 360
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.05 E-value=0.0048 Score=64.81 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCce-eEEeeccCCCCHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLNKIDLVPRE 192 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~-IlVLNKiDLvp~e 192 (484)
+.|..+....+..+|+++.|+||+++..........++... +.|. |+|+||+|+++.+
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~--gi~~iIvvvNK~Dl~~~~ 144 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV--GVPYIVVFLNKCDMVDDE 144 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEecccCCHH
Confidence 35777888888899999999999986543333334444433 4554 5689999999754
No 361
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.05 E-value=0.0015 Score=60.64 Aligned_cols=57 Identities=23% Similarity=0.173 Sum_probs=36.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---CcEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~ 320 (484)
++|.++|.++|||||||+.+....... ..++-|.+-. ..+.++ -.+.|+||+|--..
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~ 62 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDY 62 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccc
Confidence 579999999999999999999765421 1222222211 122333 25789999997543
No 362
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=97.04 E-value=0.002 Score=57.95 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f 210 (484)
|.......+..+|.++.|+|+.++-+... ..+..+... ...+.|+|+|+||+||.+... .......+.+.+....|
T Consensus 63 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 142 (164)
T cd04145 63 FSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYI 142 (164)
T ss_pred hhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEE
Confidence 33344466788999999999998754221 112222221 124679999999999975432 11122222222222122
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+..+.|++.+++.|-+
T Consensus 143 -----------------------~~Sa~~~~~i~~l~~~l~~ 161 (164)
T cd04145 143 -----------------------ETSAKDRLNVDKAFHDLVR 161 (164)
T ss_pred -----------------------EeeCCCCCCHHHHHHHHHH
Confidence 2345667788888887754
No 363
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.03 E-value=0.0018 Score=60.34 Aligned_cols=91 Identities=12% Similarity=0.032 Sum_probs=53.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHHH-----HHHHHHHHHhcCCeEEEEccc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRES-----VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e~-----~~~wl~~l~~~~p~v~f~~~~ 214 (484)
..+..+|++|+|.|+.++.+... ..+.+.+....++.|+++|.||+||.+... .......+...+....|
T Consensus 69 ~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~---- 144 (193)
T cd04118 69 IYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHF---- 144 (193)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEE----
Confidence 34568999999999988744321 112233333334689999999999975321 11122222222221112
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+..+.|++.|++.|.+..
T Consensus 145 -------------------~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 145 -------------------ETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred -------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234566778999998887655
No 364
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.02 E-value=0.0042 Score=65.90 Aligned_cols=58 Identities=21% Similarity=0.214 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHH-HHH-HHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDM-EKM-VMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~l-e~~-i~~~~~~K~~IlVLNKiDLvp 190 (484)
+.|++.+...+..+|++|.|+|+.++.+...++. +.. +....+.+++|+|+||+||++
T Consensus 96 ~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 96 RDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccC
Confidence 4577777778899999999999999843322222 211 122223467889999999984
No 365
>PLN03126 Elongation factor Tu; Provisional
Probab=97.01 E-value=0.0058 Score=65.71 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCCHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVPRES 193 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp~e~ 193 (484)
+.|.+++...+..+|+++.|+||.+...........++... +.| +|+++||+|+++.+.
T Consensus 155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~ 214 (478)
T PLN03126 155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV--GVPNMVVFLNKQDQVDDEE 214 (478)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEecccccCHHH
Confidence 45888999999999999999999987654333333444332 466 778999999998543
No 366
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.01 E-value=0.0023 Score=67.85 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCC--CCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDP--LGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdP--l~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
+.|++++...+..+|++|+|+|+.++ +.........++... +.+++|+|+||+||++
T Consensus 95 ~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 95 RDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVN 153 (425)
T ss_pred ccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 34777777778899999999999994 333333333343332 2356899999999985
No 367
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=97.01 E-value=0.0046 Score=68.34 Aligned_cols=97 Identities=15% Similarity=0.260 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHHHhcCCeEEE
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~~p~v~f 210 (484)
.|..+....+..+|.+|.|+|+.++.............. .+.|+|+|+||+||.... ....|.+++. ++...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiDl~~~~~~~~~~el~~~lg--~~~~~- 156 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKIDLPSADPERVKKEIEEVIG--LDASE- 156 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCCccCHHHHHHHHHHHhC--CCcce-
Confidence 467778889999999999999998765433222122222 367999999999996422 2233333332 11000
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
....|+.++.|.+.|++.|.++.+.
T Consensus 157 ---------------------vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 157 ---------------------AILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred ---------------------EEEeeccCCCCHHHHHHHHHHhCCC
Confidence 1135667888999999999887764
No 368
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.00 E-value=0.0018 Score=60.73 Aligned_cols=57 Identities=23% Similarity=0.180 Sum_probs=36.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
.++|+++|.++||||||++.+...... ...++-|..- ...+.++. .+.|+||||-..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~ 63 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEE 63 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchh
Confidence 478999999999999999999865431 1112222111 11123333 478899999743
No 369
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.00 E-value=0.0013 Score=60.04 Aligned_cols=50 Identities=20% Similarity=0.248 Sum_probs=35.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|.|.|+.++.+...- .....+....++.|+|+|.||+||.+.
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRED 117 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhC
Confidence 56789999999999988544321 122333333468999999999999763
No 370
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.00 E-value=0.0013 Score=60.32 Aligned_cols=48 Identities=21% Similarity=0.159 Sum_probs=33.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~--~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|+|+|+.+|.+. ..+..++... ..+.|+++|+||+||.+.
T Consensus 74 ~~~~~d~~llv~d~~~~~s~--~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSF--SYCAEVYKKYFMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHH--HHHHHHHHHhccCCCCeEEEEEEccccccc
Confidence 46889999999999888432 1233333321 136899999999999754
No 371
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.00 E-value=0.0035 Score=69.25 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEcc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~ 213 (484)
.|..+....+..+|.+|.|+|+.++............. ..+.|+|+|+||+|+..... ......+.+.+..-.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~~~lpiIvViNKiDl~~a~~-~~v~~ei~~~lg~~~---- 158 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--ENDLEIIPVLNKIDLPAADP-ERVKQEIEDVIGIDA---- 158 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--HCCCCEEEEEECCCCCcccH-HHHHHHHHHHhCCCc----
Confidence 46677888899999999999999876533222222222 23688999999999964321 112222222211000
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
......|+.++.|.+.|++.|.++++.
T Consensus 159 ----------------~~vi~iSAktG~GI~~Ll~~I~~~lp~ 185 (600)
T PRK05433 159 ----------------SDAVLVSAKTGIGIEEVLEAIVERIPP 185 (600)
T ss_pred ----------------ceEEEEecCCCCCHHHHHHHHHHhCcc
Confidence 001234567788999999999887764
No 372
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=96.99 E-value=0.0045 Score=65.26 Aligned_cols=57 Identities=21% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..|.+++...+..+|++|.|+||..++.........++... +.+++|+|+||+|+++
T Consensus 91 ~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 91 EQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDLVD 147 (406)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEeccccc
Confidence 45778888899999999999999998766555444444433 3467889999999985
No 373
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.97 E-value=0.0024 Score=60.23 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHhCCCCceeEEeeccCCCCHHHH--HHHHHHHHhcCCeEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKAGPDKHLVLLLNKIDLVPRESV--EKWLKYLREELPAVA 209 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~~~~K~~IlVLNKiDLvp~e~~--~~wl~~l~~~~p~v~ 209 (484)
|.......+..+|++|+|+|+.++.+.. .+..+ +....+..|+++|.||+||.+...+ .....+.. .+..-.
T Consensus 68 ~~~~~~~~~~~a~~iilv~D~~~~~s~~--~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~-~~~~~~ 144 (199)
T cd04110 68 FRTITSTYYRGTHGVIVVYDVTNGESFV--NVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAG-QMGISL 144 (199)
T ss_pred HHHHHHHHhCCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHH-HcCCEE
Confidence 3333455677899999999999885432 22222 3333356789999999999764321 22233332 222222
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
| ..|+.++.|++.|++.|....
T Consensus 145 ~-----------------------e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 145 F-----------------------ETSAKENINVEEMFNCITELV 166 (199)
T ss_pred E-----------------------EEECCCCcCHHHHHHHHHHHH
Confidence 2 234567788888888876543
No 374
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.97 E-value=0.002 Score=55.61 Aligned_cols=58 Identities=24% Similarity=0.207 Sum_probs=39.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHH---HHHHHhCCCCceeEEeeccCCCCHHHHHHH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDME---KMVMKAGPDKHLVLLLNKIDLVPRESVEKW 197 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le---~~i~~~~~~K~~IlVLNKiDLvp~e~~~~w 197 (484)
...+..+|++++|+|+.+|......... ........++|+++|+||+|+.+.......
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~ 123 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEE 123 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHH
Confidence 5677889999999999988653322211 111222357899999999999877654443
No 375
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=96.96 E-value=0.0015 Score=60.40 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=36.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|.|.|..++.+.... .....+....++.|+|||.||+||.+.
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 56789999999999998654332 133334433457899999999999764
No 376
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=96.96 E-value=0.0013 Score=63.61 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=19.4
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 011507 264 TVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+|+++|.+++|||||++.|..
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999985
No 377
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=96.95 E-value=0.0032 Score=56.82 Aligned_cols=52 Identities=17% Similarity=0.049 Sum_probs=35.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---HhC-CCCceeEEeeccCCCCH
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---KAG-PDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~~~-~~K~~IlVLNKiDLvp~ 191 (484)
.....+..+|.+|.|.|+.++.+. ..+.+++. ... .+.|+++|.||+||...
T Consensus 68 ~~~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 68 ITSAYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHHHHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 345567889999999999987653 22333332 222 25799999999999753
No 378
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.95 E-value=0.0016 Score=58.98 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=37.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKW 197 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~w 197 (484)
.+..+|++++|.|+.++.+.... .+...+....++.|+++|+||+||.+......|
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~ 125 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKK 125 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhh
Confidence 44789999999999987543221 122233333357999999999999876654333
No 379
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.95 E-value=0.0024 Score=61.79 Aligned_cols=65 Identities=17% Similarity=0.288 Sum_probs=46.7
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCce-eEEeeccCCCC-HHHHHHHHHHHHh
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLNKIDLVP-RESVEKWLKYLRE 203 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~-IlVLNKiDLvp-~e~~~~wl~~l~~ 203 (484)
..+...++.+|+|++|+|+..++......+..++... +.|. |+|+||+|+++ .+....+.+.+++
T Consensus 95 ~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~ 161 (225)
T cd01882 95 NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKH 161 (225)
T ss_pred HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 5667778999999999999988776666666666543 4664 45999999984 3345555544443
No 380
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.94 E-value=0.0021 Score=60.05 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=36.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGV 317 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi 317 (484)
..++|++||-++||||||++.+....... ..++.|..- ...+.++. .+.|+||+|-
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~ 63 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGS 63 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCc
Confidence 35789999999999999999999765321 111212111 11233433 4789999996
No 381
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=96.94 E-value=0.0018 Score=62.67 Aligned_cols=76 Identities=17% Similarity=0.270 Sum_probs=43.7
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
++|+|||.+||||||||+.+.+.... ..-.|.+.-.. ..+.++. .+.|+||+|-..-. .-....+++++.+.
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~-~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~---~l~~~~~~~~d~il 77 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYP-GSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD---NVRPLAYPDSDAVL 77 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CccCCccccceEEEEEECCEEEEEEEEeCCCcHHHH---HHhHHhccCCCEEE
Confidence 57999999999999999999975431 11122111111 1233332 47789999964221 11123455666655
Q ss_pred ccCC
Q 011507 339 KLDD 342 (484)
Q Consensus 339 ~l~d 342 (484)
.+.|
T Consensus 78 lvfd 81 (222)
T cd04173 78 ICFD 81 (222)
T ss_pred EEEE
Confidence 4444
No 382
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=96.93 E-value=0.00085 Score=70.73 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=22.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..++|+++|.+|+|||||+++|.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~ 27 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV 27 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe
Confidence 3588999999999999999999864
No 383
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.92 E-value=0.0029 Score=56.76 Aligned_cols=55 Identities=20% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|+++.|.|+.+|.+. ..+..++ ....++.|+|+|.||+||...
T Consensus 64 ~~~~~~~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 64 FDAITKAYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 444445677899999999999987543 2233322 222357899999999999753
No 384
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.91 E-value=0.0037 Score=55.74 Aligned_cols=90 Identities=22% Similarity=0.152 Sum_probs=52.5
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++++|+|+.++-+... ..+...+... ..+.|+|+|+||+|+.+... ......+... +....|
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~---- 140 (162)
T cd04123 66 GPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKS-VGAKHF---- 140 (162)
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHH-cCCEEE----
Confidence 3445678999999999988753211 1111222222 23689999999999985322 2223333332 222222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.+++.|.+
T Consensus 141 -------------------~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 141 -------------------ETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred -------------------EEeCCCCCCHHHHHHHHHH
Confidence 2345667788888888754
No 385
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.91 E-value=0.0023 Score=60.35 Aligned_cols=51 Identities=24% Similarity=0.210 Sum_probs=34.2
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-----HHHHHHHH-hCCCCceeEEeeccCCC
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMK-AGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-----~le~~i~~-~~~~K~~IlVLNKiDLv 189 (484)
....+..+|++|.|.|+.+|.+...- .+...+.. ...+.|+|||.||+||.
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 35567899999999999988653321 11111110 12467999999999997
No 386
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=96.91 E-value=0.0039 Score=56.69 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=37.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHh-CCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKA-GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~~-~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|.|.|+.++.+. ..+++++ ... ..+.|+++|.||+||..
T Consensus 65 ~~~~~~~~~~~ad~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 65 FRTITTAYYRGAMGIILVYDITDEKSF--ENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHHHHhCCCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 444455678899999999999887542 2333333 222 24678999999999974
No 387
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=96.91 E-value=0.0027 Score=57.57 Aligned_cols=55 Identities=18% Similarity=0.159 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHH----hCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMK----AGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~----~~~~K~~IlVLNKiDLvp 190 (484)
.|.......+..+|.+|.|.|+.+|.+.. .+..++.. ..++.|+|+|.||+||..
T Consensus 63 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~ 121 (166)
T cd04122 63 RFRAVTRSYYRGAAGALMVYDITRRSTYN--HLSSWLTDARNLTNPNTVIFLIGNKADLEA 121 (166)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 34444566788999999999999985432 23333322 124678999999999964
No 388
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=96.91 E-value=0.0027 Score=58.59 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=35.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|++|.|.|..+|-+...- .....+....++.|+|+|.||+||.+
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 356789999999999998654332 12233333335689999999999965
No 389
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.90 E-value=0.0034 Score=55.99 Aligned_cols=53 Identities=21% Similarity=0.149 Sum_probs=34.5
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~ 191 (484)
....+..+|.++.|+|..++.+... ..+..+.... ..+.|+++|+||+|+.++
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 3456778999999999987643211 1222222211 246899999999999764
No 390
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=96.89 E-value=0.006 Score=65.64 Aligned_cols=57 Identities=23% Similarity=0.304 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
+.|.+++...+..+|++|.|+||.+...........++... +.+++|+|+||+|++.
T Consensus 118 ~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 118 EQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKMDLVD 174 (474)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEeecccc
Confidence 45777888888999999999999987654333333333332 3467899999999984
No 391
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.88 E-value=0.006 Score=54.75 Aligned_cols=95 Identities=16% Similarity=0.122 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC-CHHHHHHHHHhC-CCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR-CIDMEKMVMKAG-PDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r-~~~le~~i~~~~-~~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p~v~f 210 (484)
+.......+..+|++|+|+|+.+|-+.. ...+...+.... .+.|+|+|+||+|+.+.. .......+.+... ...|
T Consensus 63 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~ 141 (163)
T cd01860 63 YRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG-LLFF 141 (163)
T ss_pred HHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC-CEEE
Confidence 3333444677899999999999874321 122223333332 457899999999997321 1222333333222 1122
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+.++.|.+.++..|...
T Consensus 142 -----------------------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 142 -----------------------ETSAKTGENVNELFTEIAKK 161 (163)
T ss_pred -----------------------EEECCCCCCHHHHHHHHHHH
Confidence 34456777888888877653
No 392
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.87 E-value=0.0036 Score=57.98 Aligned_cols=50 Identities=20% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHH--HHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCID--MEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~--le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|+||+|.|+.++.+..... ....+....++.|+|+|.||+||.+
T Consensus 68 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 68 LSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 4577899999999999876543211 1122232335789999999999975
No 393
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.86 E-value=0.0036 Score=56.65 Aligned_cols=56 Identities=18% Similarity=0.172 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---Hh-CCCCceeEEeeccCCCCH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---KA-GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~~-~~~K~~IlVLNKiDLvp~ 191 (484)
.|.......+..+|++|.|+|+.++-+. ..+..++. .. .++.|+|+|.||+|+...
T Consensus 63 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~--~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 63 RFRTITSSYYRGAHGIIIVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred hHHHHHHHHhCcCCEEEEEEECcCHHHH--HhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 3444456667889999999999887532 22222222 22 246799999999999654
No 394
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.86 E-value=0.0039 Score=57.21 Aligned_cols=90 Identities=14% Similarity=0.114 Sum_probs=56.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh--CCCCceeEEeeccCCCCH-----HHHHHHHHHHHh
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA--GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLRE 203 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~--~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~ 203 (484)
.|.......+..+|++|.|.|+.++.+... +..+ +... .++.|+++|.||+||.+. +....|.+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~- 151 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLN--VRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG- 151 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-
Confidence 444455667889999999999998754322 2222 2221 235689999999999653 23444443321
Q ss_pred cCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 204 ELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 204 ~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.|.+ ..|+..+.|.+.+++.|..
T Consensus 152 -~~~~-------------------------e~Sak~~~~v~~l~~~l~~ 174 (180)
T cd04127 152 -IPYF-------------------------ETSAATGTNVEKAVERLLD 174 (180)
T ss_pred -CeEE-------------------------EEeCCCCCCHHHHHHHHHH
Confidence 2322 2345677888888888754
No 395
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=96.85 E-value=0.0031 Score=62.83 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~ 204 (484)
.|..+....+..+|++|+|+||.+........+.+.+.. .++|+|+++||+|+.... ...++..++..
T Consensus 76 df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~D~~~a~-~~~~~~~l~~~ 143 (270)
T cd01886 76 DFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKMDRTGAD-FFRVVEQIREK 143 (270)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHH
Confidence 377788999999999999999998766555555555544 368999999999997532 23344444443
No 396
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=96.84 E-value=0.0046 Score=56.74 Aligned_cols=97 Identities=16% Similarity=0.092 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHhCC-CCceeEEeeccCCCCHHHH---HHHHHHHHhcCCeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKAGP-DKHLVLLLNKIDLVPRESV---EKWLKYLREELPAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~~~-~K~~IlVLNKiDLvp~e~~---~~wl~~l~~~~p~v 208 (484)
|..-....+..+|++|.|.|+.++.+.. ..++..+.....+ ..|+|+|.||+||.+.... ..-...+...+..-
T Consensus 62 ~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 141 (170)
T cd04108 62 FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAE 141 (170)
T ss_pred HHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCe
Confidence 3333445577999999999998863322 1223233222222 2458899999999764321 11111222222221
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.| ..|+.++.|++.|++.|.+.+
T Consensus 142 ~~-----------------------e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 142 YW-----------------------SVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EE-----------------------EEECCCCCCHHHHHHHHHHHH
Confidence 22 234567788999888876654
No 397
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=96.83 E-value=0.011 Score=65.20 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHHH
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYLR 202 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~---e~~~~wl~~l~ 202 (484)
..|..++...+..+|.+|.|+||.+........+...+.. .+.|.|+|+||+|+... +.+.....+|.
T Consensus 75 ~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~ 145 (594)
T TIGR01394 75 ADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFA 145 (594)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHH
Confidence 3477889999999999999999987543222333333333 36789999999999642 33455555553
No 398
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.82 E-value=0.0028 Score=61.72 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=43.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.++|.+||-++|||||||+.+....... ..++-|..- ...+.++ -.+.|+||+|--.-. ......+++++.+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~---~~~~~~~~~ad~v 88 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYD---NVRPLCYSDSDAV 88 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhH---HHHHHHcCCCcEE
Confidence 5789999999999999999998764311 111111111 1112332 257899999953221 1122345666655
Q ss_pred cccCC
Q 011507 338 EKLDD 342 (484)
Q Consensus 338 ~~l~d 342 (484)
..+-|
T Consensus 89 IlVyD 93 (232)
T cd04174 89 LLCFD 93 (232)
T ss_pred EEEEE
Confidence 44433
No 399
>PLN00223 ADP-ribosylation factor; Provisional
Probab=96.82 E-value=0.004 Score=57.95 Aligned_cols=93 Identities=15% Similarity=0.069 Sum_probs=53.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC--Ce-EEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL--PA-VAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~--p~-v~f~~ 212 (484)
....+..+|+||+|+|+.++.+... .++.+++.. ..++.|++||.||+||......+....++.-.. +. ..+
T Consensus 78 ~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~-- 155 (181)
T PLN00223 78 WRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYI-- 155 (181)
T ss_pred HHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEE--
Confidence 3445788999999999998753211 122332221 113689999999999965432333333331110 00 011
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
...|+.++.|++.+++.|.+.
T Consensus 156 --------------------~~~Sa~~g~gv~e~~~~l~~~ 176 (181)
T PLN00223 156 --------------------QSTCATSGEGLYEGLDWLSNN 176 (181)
T ss_pred --------------------EeccCCCCCCHHHHHHHHHHH
Confidence 124667888999998887653
No 400
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=96.82 E-value=0.0042 Score=56.37 Aligned_cols=55 Identities=9% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh-CCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~-~~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|+++.|.|+.++.+.. .+..+ +... ....|+++|.||+||.+.
T Consensus 63 ~~~~~~~~~~~~~~~l~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 63 YRTITTAYYRGAMGFILMYDITNEESFN--AVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred HHHHHHHHccCCcEEEEEEECCCHHHHH--HHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 3334456678999999999998774321 22332 2222 246789999999999754
No 401
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.81 E-value=0.0046 Score=59.79 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv 189 (484)
.|..+....+..+|.+|.|+|+..........+.+.+.. .+.|+|+|+||+|+.
T Consensus 85 ~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 85 DFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred ccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCcc
Confidence 377889999999999999999998765444344443332 357999999999986
No 402
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=96.79 E-value=0.0027 Score=57.16 Aligned_cols=89 Identities=15% Similarity=0.072 Sum_probs=51.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
..+..+|++|.|.|..++-+... ......+... ..+.|+++|.||+||.+...+ ......+...+....|
T Consensus 68 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------ 141 (163)
T cd04176 68 LYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFM------ 141 (163)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEE------
Confidence 34678999999999998754321 1111222222 247899999999999754321 1122223333322112
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|.+.++..|.+
T Consensus 142 -----------------~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04176 142 -----------------ETSAKSKTMVNELFAEIVR 160 (163)
T ss_pred -----------------EecCCCCCCHHHHHHHHHH
Confidence 2345667788888877754
No 403
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.79 E-value=0.0026 Score=57.99 Aligned_cols=52 Identities=25% Similarity=0.316 Sum_probs=36.2
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
...+..+|++|+|+|+.++.+... ..+.+++. ..++.|+++|.||+||....
T Consensus 62 ~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~-~~~~~piilv~NK~Dl~~~~ 115 (164)
T cd04162 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQ-HPPDLPLVVLANKQDLPAAR 115 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHh-CCCCCcEEEEEeCcCCcCCC
Confidence 356889999999999999863221 12333332 22578999999999996543
No 404
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.78 E-value=0.003 Score=57.41 Aligned_cols=54 Identities=22% Similarity=0.317 Sum_probs=33.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
++|+++|.+|||||||++.+........ .+..|.- ...+.++. .+.+.||+|--
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~--~~~i~~~~~~~~l~i~D~~g~~ 58 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF--KKEVLVDGQSHLLLIRDEGGAP 58 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce--EEEEEECCEEEEEEEEECCCCC
Confidence 3699999999999999998875543221 1111111 12233332 47789999984
No 405
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.76 E-value=0.0058 Score=54.70 Aligned_cols=95 Identities=18% Similarity=0.066 Sum_probs=58.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCH-H-HHHHHHHHHHhc-CCeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPR-E-SVEKWLKYLREE-LPAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~-e-~~~~wl~~l~~~-~p~v 208 (484)
+.......+..+|.++.|+|..+|-+.. ...+..+.... ..++|+|+|+||+|+.+. . .......+.... .|.+
T Consensus 61 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04139 61 YAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYV 140 (164)
T ss_pred hhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE
Confidence 4445566788999999999999875321 23333333321 247899999999999762 1 122222222222 2322
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.++.
T Consensus 141 -------------------------~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 141 -------------------------ETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred -------------------------EeeCCCCCCHHHHHHHHHHHH
Confidence 234567789999988876544
No 406
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.75 E-value=0.01 Score=60.48 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-|.++|.-..||||+||-|+...
T Consensus 58 KPmill~GqyStGKTtfi~yLle~d 82 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQD 82 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCC
Confidence 4568999999999999999999764
No 407
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=96.75 E-value=0.0086 Score=58.24 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPL 159 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl 159 (484)
.+.+++..++..+|+++.|+|+.++.
T Consensus 66 ~~~~~~l~~~~~ad~il~V~D~t~~~ 91 (233)
T cd01896 66 GRGRQVIAVARTADLILMVLDATKPE 91 (233)
T ss_pred hHHHHHHHhhccCCEEEEEecCCcch
Confidence 46677788899999999999987654
No 408
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.74 E-value=0.0064 Score=57.20 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=34.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCH
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~ 191 (484)
..+..+|+||+|+|+.++.+... ..+...+... ..+.|+|+|+||+|+.+.
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 46788999999999998754321 1111122221 136899999999999863
No 409
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.74 E-value=0.0011 Score=67.76 Aligned_cols=35 Identities=3% Similarity=-0.181 Sum_probs=27.6
Q ss_pred hhhcccccccccCCCcCCCCCeeecCCCCcccccccccc
Q 011507 440 EVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEV 478 (484)
Q Consensus 440 ~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td 478 (484)
.++..|+....++..+.+.+ ..+.+ +.|+++++++
T Consensus 236 pVi~vSA~~g~GIdeL~~~I-~~~~~---~l~~sg~l~~ 270 (332)
T PRK09435 236 PVLTCSALEGEGIDEIWQAI-EDHRA---ALTASGEFAA 270 (332)
T ss_pred CEEEEECCCCCCHHHHHHHH-HHHHH---HhccCChHHH
Confidence 56778888888888888887 55655 7888888887
No 410
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.74 E-value=0.0047 Score=55.99 Aligned_cols=89 Identities=12% Similarity=0.060 Sum_probs=52.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh----CCCCceeEEeeccCCCCHHHH--HHHHHHHHhcCCeEEEEcc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVPRESV--EKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~----~~~K~~IlVLNKiDLvp~e~~--~~wl~~l~~~~p~v~f~~~ 213 (484)
..+..+|++|.|.|..++.+... ..+...+... ..+.|+++|.||+||.+...+ ..-..+. ..+..-.|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~~~~~~~--- 143 (165)
T cd04140 68 LSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA-TEWNCAFM--- 143 (165)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH-HHhCCcEE---
Confidence 35568999999999998765321 2222333322 146899999999999762211 1111111 11221112
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+..+.|++.+++.|-++
T Consensus 144 --------------------e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 144 --------------------ETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred --------------------EeecCCCCCHHHHHHHHHhc
Confidence 24556778999999888764
No 411
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.73 E-value=0.0068 Score=53.92 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=55.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC--CCCceeEEeeccCCCCH-HHHHHHHHHHHhcC--CeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLVPR-ESVEKWLKYLREEL--PAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~--~~K~~IlVLNKiDLvp~-e~~~~wl~~l~~~~--p~v 208 (484)
+.......+..+|+++.|+|..+|.+... ..+...+.... ...|+++|+||+|+.+. .........+...+ |.+
T Consensus 60 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 139 (160)
T cd00876 60 FSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFI 139 (160)
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEE
Confidence 44445667888999999999987753211 12222222222 37899999999999862 22222332232222 322
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
. .|+....|.+.+++.|.+
T Consensus 140 ~-------------------------~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 140 E-------------------------TSAKDNINIDEVFKLLVR 158 (160)
T ss_pred E-------------------------eccCCCCCHHHHHHHHHh
Confidence 2 344566788888888764
No 412
>CHL00189 infB translation initiation factor 2; Provisional
Probab=96.73 E-value=0.011 Score=66.66 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH--HHHHHHHHHH---HhcC-C
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR--ESVEKWLKYL---REEL-P 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~--e~~~~wl~~l---~~~~-p 206 (484)
..|.......+..+|++|.|+||.+............+.. .+.|+|+|+||+|+.+. +.+..++..+ ...+ .
T Consensus 306 e~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~ 383 (742)
T CHL00189 306 EAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGG 383 (742)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCC
Confidence 3566666678899999999999998654333233333332 36899999999999753 2233333221 1111 0
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.++| ...|+..+.|.+.|++.|..++
T Consensus 384 ~vpv----------------------v~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 384 DTPM----------------------IPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred CceE----------------------EEEECCCCCCHHHHHHhhhhhh
Confidence 1111 2456678889999998887654
No 413
>PLN00023 GTP-binding protein; Provisional
Probab=96.72 E-value=0.0038 Score=63.49 Aligned_cols=79 Identities=24% Similarity=0.243 Sum_probs=48.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC----------------CcEEEEecCCCccCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----------------KNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~----------------~~i~liDTPGi~~~~~~ 323 (484)
..++|+|+|..+|||||||+.+.+.... ...++-|.+-....+.++ -.+.|.||+|-.....
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs- 98 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD- 98 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh-
Confidence 4689999999999999999999976532 223344444333333332 1378999999643211
Q ss_pred ChHHHHHHhccccccccCC
Q 011507 324 ENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 324 ~~~~~~~L~~~~~i~~l~d 342 (484)
-....+++++.+..+.|
T Consensus 99 --L~~~yyr~AdgiILVyD 115 (334)
T PLN00023 99 --CRSLFYSQINGVIFVHD 115 (334)
T ss_pred --hhHHhccCCCEEEEEEe
Confidence 12234556665544444
No 414
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=96.71 E-value=0.011 Score=59.80 Aligned_cols=96 Identities=25% Similarity=0.330 Sum_probs=62.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCH-----HHHHHHHHh---CCCCceeEEeeccC-CCCHHHHHHHHHHHHhcCCeE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCI-----DMEKMVMKA---GPDKHLVLLLNKID-LVPRESVEKWLKYLREELPAV 208 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~-----~le~~i~~~---~~~K~~IlVLNKiD-Lvp~e~~~~wl~~l~~~~p~v 208 (484)
++.+=|+.+-|++.|+|... ..-++| .|...+... -.+||.|+|+||+| ..+.+.++...+++.+.....
T Consensus 230 ~FLrHIERt~vL~hviD~s~-~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~ 308 (369)
T COG0536 230 RFLRHIERTRVLLHVIDLSP-IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWE 308 (369)
T ss_pred HHHHHHHhhheeEEEEecCc-ccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCC
Confidence 44556778999999999862 222222 122222221 14799999999999 567788888888888764322
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+. ++|+.+..|.+.|+..+..+...
T Consensus 309 ~~~----------------------~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 309 VFY----------------------LISALTREGLDELLRALAELLEE 334 (369)
T ss_pred cce----------------------eeehhcccCHHHHHHHHHHHHHH
Confidence 220 14556677888888887776554
No 415
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=96.70 E-value=0.0054 Score=57.05 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CC--eEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LP--AVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p--~v~f~~ 212 (484)
....+..+|++|+|+|+.++.+.. ...+.+.+.. ...+.|+|||.||+||...........++.-. .+ .+.+
T Consensus 78 ~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~-- 155 (182)
T PTZ00133 78 WRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYI-- 155 (182)
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEE--
Confidence 344578899999999998874321 1223333321 11357899999999996432222222222111 00 0111
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|.+.+++.|.+..
T Consensus 156 --------------------~~~Sa~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 156 --------------------QGCCATTAQGLYEGLDWLSANI 177 (182)
T ss_pred --------------------EeeeCCCCCCHHHHHHHHHHHH
Confidence 1245678889999999887644
No 416
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.70 E-value=0.0042 Score=56.66 Aligned_cols=89 Identities=11% Similarity=0.099 Sum_probs=53.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN 220 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~ 220 (484)
.+..+|++|.|+|+.++.+... ....+.+....++.|+|+|.||+||........-..+. +....-.|
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~---------- 137 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFH-RKKNLQYY---------- 137 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHH-HHcCCEEE----------
Confidence 3467999999999998865422 12222333333479999999999997433211111222 22221122
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+..+.|.+.+++.|.+..
T Consensus 138 -------------e~Sa~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 138 -------------EISAKSNYNFEKPFLWLARKL 158 (166)
T ss_pred -------------EEeCCCCCChHHHHHHHHHHH
Confidence 234567788999998887644
No 417
>PLN03110 Rab GTPase; Provisional
Probab=96.69 E-value=0.0066 Score=58.17 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHh-CCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKA-GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~~-~~~K~~IlVLNKiDLvp 190 (484)
.|.......+..+|.+|.|.|+.++-+.. .+..++ ... ..+.|+|+|.||+||..
T Consensus 73 ~~~~~~~~~~~~~~~~ilv~d~~~~~s~~--~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 73 RYRAITSAYYRGAVGALLVYDITKRQTFD--NVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCChHHHH--HHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 35555566788999999999999875432 222222 222 23688999999999964
No 418
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=96.68 E-value=0.0065 Score=58.64 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=34.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|++|+|.|+.++.+..+- .+..+......+.|+|||.||+||..
T Consensus 63 ~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 63 MYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 346789999999999998553321 23333222234578999999999975
No 419
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.67 E-value=0.0058 Score=54.99 Aligned_cols=88 Identities=14% Similarity=0.118 Sum_probs=52.1
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeEEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v~f~ 211 (484)
...+..+|.++.|.|+.++.+... ......+... ..+.|+|+|.||+||.+.. ....+...+. .+. |
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~--~- 140 (164)
T smart00173 66 DQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG--CPF--L- 140 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC--CEE--E-
Confidence 345678999999999998754211 1111122221 2368999999999997532 2223332211 122 2
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+..+.|.+.|++.|.+..
T Consensus 141 ----------------------~~Sa~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 141 ----------------------ETSAKERVNVDEAFYDLVREI 161 (164)
T ss_pred ----------------------EeecCCCCCHHHHHHHHHHHH
Confidence 334566778899988886543
No 420
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.67 E-value=0.0068 Score=56.33 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HH-hCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MK-AGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~-~~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|.|+.++.+. ..+..++ .. .....|+|+|.||+||.+
T Consensus 62 ~~~~~~~~~~~~d~iilv~d~~~~~s~--~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 62 FRSLNNSYYRGAHGYLLVYDVTDQESF--ENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHhhHHHHccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 444556678899999999999887542 2222222 22 223578999999999984
No 421
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=96.66 E-value=0.0075 Score=56.30 Aligned_cols=91 Identities=13% Similarity=0.045 Sum_probs=54.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh----CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCe
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA----GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPA 207 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~----~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~ 207 (484)
.....+..+|++|.|.|..++.+... ..+...+... ..+.|+|+|.||+||.+. .....|.. .+..
T Consensus 63 ~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~----~~~~ 138 (190)
T cd04144 63 LRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALAR----RLGC 138 (190)
T ss_pred HHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHH----HhCC
Confidence 33456778999999999988754321 1122222221 246799999999999642 22233322 2222
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..| ..|+..+.|++.+++.+.+...
T Consensus 139 ~~~-----------------------e~SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 139 EFI-----------------------EASAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred EEE-----------------------EecCCCCCCHHHHHHHHHHHHH
Confidence 122 2445677888888888766543
No 422
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=96.65 E-value=0.0085 Score=54.39 Aligned_cols=57 Identities=21% Similarity=0.112 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh----CCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA----GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~----~~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|++|.|.|..++-+... ..+..++... ..+.|+|+|.||+||.++
T Consensus 67 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (170)
T cd04116 67 FRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPER 129 (170)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccc
Confidence 33334456778999999999888754322 2222222211 135689999999999743
No 423
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=96.64 E-value=0.0046 Score=56.63 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|.|.|+.+|.+...- .+...+....++.|+++|.||+||.+.
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 119 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTD 119 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccC
Confidence 55789999999999998654321 223333333346899999999999764
No 424
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.64 E-value=0.0083 Score=53.89 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~-~~~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|++|.|+|+.++.+... ......+.. ..++.|+++|+||+|+.+.
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~ 120 (161)
T cd04113 62 FRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ 120 (161)
T ss_pred HHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh
Confidence 44445666789999999999998755322 111122222 2357899999999999753
No 425
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=96.64 E-value=0.004 Score=59.96 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=53.0
Q ss_pred hcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchhhhhh
Q 011507 145 VSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQEQRAN 220 (484)
Q Consensus 145 ~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~~~~~ 220 (484)
.+|++|.|.|+.++-+... ..+...+... ..+.|+|+|.||+||++...+ ......+...++...|
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~---------- 141 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFI---------- 141 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEE----------
Confidence 8999999999999855321 2222233332 146899999999999764321 1111222233322112
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+..+.|++.|++.|.+...
T Consensus 142 -------------e~SA~~~~gv~~l~~~l~~~~~ 163 (221)
T cd04148 142 -------------ETSAGLQHNVDELLEGIVRQIR 163 (221)
T ss_pred -------------EecCCCCCCHHHHHHHHHHHHH
Confidence 3455677888999888876554
No 426
>PRK10218 GTP-binding protein; Provisional
Probab=96.62 E-value=0.021 Score=63.09 Aligned_cols=67 Identities=21% Similarity=0.208 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC---HHHHHHHHHHHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP---RESVEKWLKYLR 202 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp---~e~~~~wl~~l~ 202 (484)
.|..+....+..+|.+|.|+||.+........+...+.. .+.|.|+|+||+|+.. .+.+......|.
T Consensus 80 df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~ 149 (607)
T PRK10218 80 DFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFV 149 (607)
T ss_pred hhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence 366677889999999999999988544434344444333 3688899999999853 345566666653
No 427
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.56 E-value=0.0019 Score=56.56 Aligned_cols=85 Identities=16% Similarity=0.192 Sum_probs=45.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN 220 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~ 220 (484)
..+..+|+++.|.|+.++.......+.+.. ..+.|+++|+||+|+........+...+........+
T Consensus 76 ~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---------- 142 (161)
T TIGR00231 76 SSLRVFDIVILVLDVEEILEKQTKEIIHHA---ESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPII---------- 142 (161)
T ss_pred EEEEEEEEeeeehhhhhHhHHHHHHHHHhc---ccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceE----------
Confidence 333445555555555444322222222222 1267999999999998755334343444332111111
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
.+|+..+.|.+.+++.|.
T Consensus 143 -------------~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 143 -------------PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred -------------EeecCCCCCHHHHHHHhh
Confidence 345567778888887764
No 428
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=96.56 E-value=0.015 Score=58.21 Aligned_cols=95 Identities=20% Similarity=0.213 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHH--HHHHHHH------hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCID--MEKMVMK------AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~--le~~i~~------~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~ 204 (484)
+-+=-+|.+=||.++++++|||...|.- ++|+ +..++.+ .-..+|.++|.||||+-. .-...+..|.+.
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~e--ae~~~l~~L~~~ 338 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPE--AEKNLLSSLAKR 338 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchh--HHHHHHHHHHHH
Confidence 3344467778899999999999997744 4442 2222111 124688999999999953 223334555554
Q ss_pred CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 205 ~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..... +.++|+....|.+.|++.|+.
T Consensus 339 lq~~~----------------------V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 LQNPH----------------------VVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCCCc----------------------EEEeeeccccchHHHHHHHhh
Confidence 43111 113445566788888887764
No 429
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=96.56 E-value=0.0096 Score=65.58 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|+|+.+.+..........+.. .+.|+|+|+||+|+++
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIP 135 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccc
Confidence 43334456788999999999998654433343444443 3689999999999986
No 430
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.54 E-value=0.0081 Score=57.34 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv 189 (484)
|.......+..+|++|.|+|+..........+.+.+.. .++|+++|+||+|++
T Consensus 84 f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 84 FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 56677888899999999999988765433333233322 358999999999987
No 431
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.53 E-value=0.0084 Score=53.72 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
..+..+|.++.|.|..++.+.... .....+... ..+.|+|+|.||+||.+...+ ..-...+.+.+....|
T Consensus 68 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------ 141 (163)
T cd04136 68 LYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFY------ 141 (163)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEE------
Confidence 345789999999999887543211 111222221 246899999999999753321 1122223333321112
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|++.+++.|.+
T Consensus 142 -----------------~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 142 -----------------ETSAKSKINVDEVFADLVR 160 (163)
T ss_pred -----------------EecCCCCCCHHHHHHHHHH
Confidence 2445677888888887754
No 432
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=96.53 E-value=0.0088 Score=56.88 Aligned_cols=52 Identities=23% Similarity=0.172 Sum_probs=35.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh-CCCCceeEEeeccCCCC
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~-~~~K~~IlVLNKiDLvp 190 (484)
....+..+|++|.|.|+.++.+...- .....+... ..+.|+|+|.||+||.+
T Consensus 66 ~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 66 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 34567799999999999998654321 112233332 24679999999999964
No 433
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.53 E-value=0.011 Score=59.77 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
....|+|+|.||+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999999874
No 434
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=96.51 E-value=0.0097 Score=53.36 Aligned_cols=54 Identities=19% Similarity=0.088 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh--CCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA--GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~--~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|.|+|+.++.+.. .+..+ +... ..+.|+++|.||+|+..
T Consensus 62 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 62 FRTLTSSYYRGAQGVILVYDVTRRDTFT--NLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred hhhhhHHHhCCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 4444556678899999999998875422 22222 2221 24678999999999983
No 435
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=96.51 E-value=0.0055 Score=69.55 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=44.0
Q ss_pred hhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEc
Q 011507 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKC 212 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~ 212 (484)
.+.+|+|+.|+||.+. .++..+...+.+ .++|+|+|+||+|+..+..+....+.+.+. .|.+++++
T Consensus 83 ~~~aD~vI~VvDat~l--er~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA 150 (772)
T PRK09554 83 SGDADLLINVVDASNL--ERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVS 150 (772)
T ss_pred ccCCCEEEEEecCCcc--hhhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEe
Confidence 3589999999999874 344444444444 369999999999998654433344555544 35565543
No 436
>PRK12739 elongation factor G; Reviewed
Probab=96.49 E-value=0.0066 Score=68.41 Aligned_cols=68 Identities=18% Similarity=0.245 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~ 205 (484)
|..++...+..+|++|.|+||.+........+...+.. .++|.|+++||+|+++.+ ....+..++..+
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK~D~~~~~-~~~~~~~i~~~l 153 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNKMDRIGAD-FFRSVEQIKDRL 153 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCCCCCCC-HHHHHHHHHHHh
Confidence 66689999999999999999999876555555555544 368999999999999653 344555555543
No 437
>PLN03118 Rab family protein; Provisional
Probab=96.47 E-value=0.012 Score=55.91 Aligned_cols=98 Identities=16% Similarity=0.001 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHH--HHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCID--MEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVA 209 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~--le~~i~~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~ 209 (484)
|.......+..+|++|+|+|+.++.+..... ....+... ..+.++|+|.||+||.+...+ ......+...+....
T Consensus 75 ~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~ 154 (211)
T PLN03118 75 FRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLF 154 (211)
T ss_pred hHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEE
Confidence 3333455678899999999998875432211 11222211 134688999999999754322 122222223333222
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
| ..|+..+.|++.+++.|.....
T Consensus 155 ~-----------------------e~SAk~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 155 L-----------------------ECSAKTRENVEQCFEELALKIM 177 (211)
T ss_pred E-----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3 2345667788999988876554
No 438
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=96.45 E-value=0.012 Score=55.23 Aligned_cols=91 Identities=12% Similarity=0.075 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~l~~~~p~ 207 (484)
|.......+..+|++|.|.|..+|.+... .+++. +....++-|+|||.||+||.. .+....|.+. +..
T Consensus 68 ~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~-i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~----~~~ 142 (189)
T cd04121 68 FCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKE-IDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAER----NGM 142 (189)
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHH-HHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHH----cCC
Confidence 33333445679999999999999866433 12222 233335789999999999963 3344455432 222
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..| ..|+.++.|++.+++.|...
T Consensus 143 ~~~-----------------------e~SAk~g~~V~~~F~~l~~~ 165 (189)
T cd04121 143 TFF-----------------------EVSPLCNFNITESFTELARI 165 (189)
T ss_pred EEE-----------------------EecCCCCCCHHHHHHHHHHH
Confidence 222 23456778888888877653
No 439
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=96.43 E-value=0.0017 Score=68.73 Aligned_cols=81 Identities=22% Similarity=0.351 Sum_probs=59.0
Q ss_pred ccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCcc-----ceecCCCCeeeeeEEEE--eCCc
Q 011507 236 QTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHV-----ANVGATPGLTRSMQEVQ--LDKN 308 (484)
Q Consensus 236 s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~-----~~v~~~pg~Tr~~~~~~--l~~~ 308 (484)
++....|...|+.+....+ ...+.|+.||.+|.|++++||++...-. ..-++.||||-....+. +...
T Consensus 288 ~akk~~g~r~l~~~~~~~a-----g~~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~ 362 (572)
T KOG1249|consen 288 SAKKDMGERDLLALETGDA-----GKAGPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRG 362 (572)
T ss_pred hhHhhhhHHHHHHhhhhcc-----ccccchHHhhhhhhccchhhhhhhhhhccchhccccCCCCcccccceeeecccccc
Confidence 3445566666655544322 3467899999999999999999984432 23578999998876655 5567
Q ss_pred EEEEecCCCccCC
Q 011507 309 VKLLDCPGVVMLK 321 (484)
Q Consensus 309 i~liDTPGi~~~~ 321 (484)
=.++||||++.+.
T Consensus 363 ~w~YDTPG~~~~~ 375 (572)
T KOG1249|consen 363 AWLYDTPGVLNPN 375 (572)
T ss_pred ceeecCCCccChh
Confidence 7899999999874
No 440
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=96.43 E-value=0.0039 Score=56.95 Aligned_cols=64 Identities=17% Similarity=0.133 Sum_probs=40.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHH
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYL 201 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l 201 (484)
.....+..+|+||+|+|+.++.+... ..+..++... ..++|+++|+||+||..........+++
T Consensus 59 ~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~ 125 (167)
T cd04161 59 IWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYL 125 (167)
T ss_pred HHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhc
Confidence 34567789999999999998853211 1222222211 1368999999999996544334444443
No 441
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=96.42 E-value=0.0085 Score=54.06 Aligned_cols=52 Identities=15% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~ 191 (484)
...+..+|.++.|.|..++.+..+ ..+..++.. ...+.|+|+|.||+||.+.
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhc
Confidence 345677999999999987754322 122222221 1246899999999999753
No 442
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.41 E-value=0.0025 Score=59.48 Aligned_cols=76 Identities=29% Similarity=0.315 Sum_probs=45.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE---EEe----CCcEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE---VQL----DKNVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~---~~l----~~~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..|.++|.+|+||++|+..|..... +.|..++.. +.. ...+.|+|+||--.-...-.+....+.++.
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~------~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k 77 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKT------VPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK 77 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---------B---SSEEEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCc------CCeeccccCCceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence 5799999999999999999997642 222222211 112 457999999998655321111112467777
Q ss_pred cccccCCCc
Q 011507 336 RIEKLDDPV 344 (484)
Q Consensus 336 ~i~~l~d~~ 344 (484)
.|.++.|..
T Consensus 78 ~IIfvvDSs 86 (181)
T PF09439_consen 78 GIIFVVDSS 86 (181)
T ss_dssp EEEEEEETT
T ss_pred EEEEEEeCc
Confidence 777777764
No 443
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=96.40 E-value=0.0057 Score=55.70 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=34.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|.|.|..++-+.... .+...+....++.|+++|.||+||.+.
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 35678999999999988553221 122333333467999999999999754
No 444
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=96.39 E-value=0.015 Score=62.01 Aligned_cols=51 Identities=35% Similarity=0.459 Sum_probs=37.5
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.....+..+|+||+|+|+.+|.+.....+ ..+.. .++|+|+|+||+||.+.
T Consensus 275 ~~~~~~~~aD~il~V~D~s~~~s~~~~~l-~~~~~--~~~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 275 KSFKAIKQADLVIYVLDASQPLTKDDFLI-IDLNK--SKKPFILVLNKIDLKIN 325 (442)
T ss_pred HHHHHHhhCCEEEEEEECCCCCChhHHHH-HHHhh--CCCCEEEEEECccCCCc
Confidence 44677889999999999999876433322 22221 36899999999999764
No 445
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=96.38 E-value=0.012 Score=53.72 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=34.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
.+..+|+++.|.|+.++.+..+. .+...+....++.|+++|.||+||.+.+
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 121 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccCh
Confidence 45789999999999877442221 1222333333578999999999997653
No 446
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=96.35 E-value=0.0061 Score=67.29 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=51.1
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC--CeEEEEccchhhhhhc
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL--PAVAFKCSTQEQRANL 221 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~--p~v~f~~~~~~~~~~~ 221 (484)
+.+|+|+.|+|+.+. .++..+...+.+ .++|+|+|+||+|+..+..+..-.+.+.+.+ |.+.
T Consensus 71 ~~aDvvI~VvDat~l--er~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~------------ 134 (591)
T TIGR00437 71 EKPDLVVNVVDASNL--ERNLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVP------------ 134 (591)
T ss_pred cCCCEEEEEecCCcc--hhhHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEE------------
Confidence 579999999999874 233332223333 4789999999999975443222233444443 3333
Q ss_pred CCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.|+.++.|.+.|++.+.+.
T Consensus 135 -------------tSA~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 135 -------------TSATEGRGIERLKDAIRKA 153 (591)
T ss_pred -------------EECCCCCCHHHHHHHHHHH
Confidence 3445667888888877654
No 447
>PLN03108 Rab family protein; Provisional
Probab=96.35 E-value=0.011 Score=56.21 Aligned_cols=57 Identities=21% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|++|.|.|+.+|.+... .++.........+.|+|+|.||+||...
T Consensus 68 ~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 68 FRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 33334556678999999999988754332 1222222222346899999999999653
No 448
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=96.34 E-value=0.005 Score=59.89 Aligned_cols=81 Identities=14% Similarity=0.150 Sum_probs=49.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CC-cEEEEecCCCccCCCC--ChHHHHHHhccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DK-NVKLLDCPGVVMLKSG--ENDASIALRNCKRI 337 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~-~i~liDTPGi~~~~~~--~~~~~~~L~~~~~i 337 (484)
+|.++|..++||||..+.+.......-...-|.|.....-.+ +. .+.++|+||-...-.. .......+++|..+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 589999999999999999997653222223355555444332 22 6899999998644221 23445678899888
Q ss_pred cccCCCc
Q 011507 338 EKLDDPV 344 (484)
Q Consensus 338 ~~l~d~~ 344 (484)
..|.|..
T Consensus 81 IyV~D~q 87 (232)
T PF04670_consen 81 IYVFDAQ 87 (232)
T ss_dssp EEEEETT
T ss_pred EEEEEcc
Confidence 7776654
No 449
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=96.33 E-value=0.0068 Score=63.81 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=46.3
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhC----------CCCceeEEeeccCCCCH
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG----------PDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~----------~~K~~IlVLNKiDLvp~ 191 (484)
....-.+..++.++.||||+.|+||-.-..+....+++.+...+ ..+++|+|.||+|++++
T Consensus 334 iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 334 IEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred hHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 33444667889999999999999997666666666666665421 23789999999999987
No 450
>PRK00007 elongation factor G; Reviewed
Probab=96.33 E-value=0.011 Score=66.59 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=53.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELP 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p 206 (484)
|..++...+..+|++|.|+||..........+..++... ++|.|+++||+|+++.. ....+..+++.++
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~D~~~~~-~~~~~~~i~~~l~ 156 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKMDRTGAD-FYRVVEQIKDRLG 156 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECCCCCCCC-HHHHHHHHHHHhC
Confidence 556899999999999999999988776666666666553 68999999999998644 4445566665543
No 451
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.0048 Score=60.54 Aligned_cols=82 Identities=21% Similarity=0.288 Sum_probs=55.7
Q ss_pred cccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccc---eecCCCCeeee-----eEEEEeCCc
Q 011507 237 TSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVA---NVGATPGLTRS-----MQEVQLDKN 308 (484)
Q Consensus 237 ~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~---~v~~~pg~Tr~-----~~~~~l~~~ 308 (484)
.+.-+|-+.|-..|-+-+-..+ -.++|.-||-++.||||||++|.+.+.- .....|++--. .|+..+.-.
T Consensus 19 l~GHvGFdsLPdQLV~ksv~~G--F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlK 96 (406)
T KOG3859|consen 19 LAGHVGFDSLPDQLVNKSVSQG--FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLK 96 (406)
T ss_pred ecCccCcccChHHHHHHHHhcC--ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEE
Confidence 3444566777777766554444 3689999999999999999999987642 12334554333 333333346
Q ss_pred EEEEecCCCccC
Q 011507 309 VKLLDCPGVVML 320 (484)
Q Consensus 309 i~liDTPGi~~~ 320 (484)
+.++||-|+...
T Consensus 97 Ltiv~tvGfGDQ 108 (406)
T KOG3859|consen 97 LTIVDTVGFGDQ 108 (406)
T ss_pred EEEEeecccccc
Confidence 789999999865
No 452
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.32 E-value=0.015 Score=56.68 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCC
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLv 189 (484)
...+..+|++|+|.|..++.+... ......+....++.|+|||.||+||.
T Consensus 79 ~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~ 130 (232)
T cd04174 79 PLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLR 130 (232)
T ss_pred HHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence 345789999999999999876543 12223344334578999999999995
No 453
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=96.32 E-value=0.011 Score=57.62 Aligned_cols=68 Identities=22% Similarity=0.325 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~ 205 (484)
|..+....+..+|.++.|+|+.+........+.+.+.. .+.|+++++||+|+...+ ...-+..+++.+
T Consensus 77 f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK~D~~~a~-~~~~~~~i~~~~ 144 (237)
T cd04168 77 FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNKIDRAGAD-LEKVYQEIKEKL 144 (237)
T ss_pred hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccccCCC-HHHHHHHHHHHH
Confidence 66678889999999999999998765433444444443 368999999999998532 233444444443
No 454
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.31 E-value=0.015 Score=56.82 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHhh-hcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 011507 132 DRAFYKELVKVIE-VSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (484)
Q Consensus 132 ~k~~~~el~kvie-~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~ 204 (484)
...+.+.+...++ ..++||.|+||+.-+.... ..+.+.+.. .+++.|+|+||+|++.+.. .|+..+++.
T Consensus 148 ~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D~~~~~~--~~~~~~~~~ 218 (240)
T smart00053 148 EEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLDLMDEGT--DARDILENK 218 (240)
T ss_pred HHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCCCCCccH--HHHHHHhCC
Confidence 3456666888888 5579999999997666544 345555543 3689999999999997543 299888775
No 455
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.31 E-value=0.0097 Score=53.81 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=35.6
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh---CCCCceeEEeeccCCCC
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA---GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~---~~~K~~IlVLNKiDLvp 190 (484)
.....+..+|++|.|+|+.++.+... ......+... ..+.|+|+|.||+||..
T Consensus 64 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 120 (165)
T cd04146 64 QLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLH 120 (165)
T ss_pred hHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHH
Confidence 34456778999999999998854321 1122233332 23689999999999964
No 456
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=96.30 E-value=0.015 Score=65.88 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=37.8
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
|..........+|++|+|+||.+............+.. .+.|+|+|+||+|+..
T Consensus 350 F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~ 403 (787)
T PRK05306 350 FTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPG 403 (787)
T ss_pred chhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccc
Confidence 44444566788999999999998654333333333332 3689999999999964
No 457
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=96.30 E-value=0.012 Score=55.01 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|++|.|.|..++.+..+- .....+....++.|+|||.||+||..
T Consensus 70 ~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 70 LSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 346789999999999998654322 11222333335789999999999964
No 458
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=96.28 E-value=0.014 Score=53.73 Aligned_cols=51 Identities=20% Similarity=0.278 Sum_probs=35.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh--CCCCceeEEeeccCCCC
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~--~~~K~~IlVLNKiDLvp 190 (484)
...+..+|++|.|.|..++.+.... .+...+... .++.|+|+|.||+||..
T Consensus 68 ~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 68 DQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred HHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 3456789999999999998765432 122333332 24689999999999953
No 459
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=96.27 E-value=0.02 Score=63.14 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC--HHHHHHHHHHHH---hcCC-eE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP--RESVEKWLKYLR---EELP-AV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp--~e~~~~wl~~l~---~~~p-~v 208 (484)
|.....+....+|++|.|+||.+............... .+.|+|+++||+|+.. .+.+..++..+. ..+. ..
T Consensus 148 F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~ 225 (587)
T TIGR00487 148 FTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDT 225 (587)
T ss_pred hhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCc
Confidence 44444556788999999999998654333333233322 3689999999999953 333444433211 0110 01
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
. ..+.|+.++.|.+.|++.|-.
T Consensus 226 ~----------------------~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 226 I----------------------FVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred e----------------------EEEEECCCCCChHHHHHhhhh
Confidence 1 124566788889888887743
No 460
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=96.26 E-value=0.012 Score=54.99 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=34.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|.|.|..++-+...- .....+....++.|+|||.||+||...
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 35679999999999888654321 122233333457899999999999754
No 461
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.26 E-value=0.014 Score=55.79 Aligned_cols=98 Identities=16% Similarity=0.062 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCC-CCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGP-DKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~-~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f 210 (484)
|.......+..+|+||.|.|..+|-+... .++..+...... ..++|+|.||+||.+... ...-...+.+.++...|
T Consensus 65 ~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 144 (211)
T cd04111 65 FRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYI 144 (211)
T ss_pred HHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEE
Confidence 33334566788999999999998854221 112222211112 346788999999975321 11112223333332222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.+++.|.+...
T Consensus 145 -----------------------e~Sak~g~~v~e~f~~l~~~~~ 166 (211)
T cd04111 145 -----------------------ETSARTGDNVEEAFELLTQEIY 166 (211)
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345667788888888876544
No 462
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.25 E-value=0.013 Score=53.26 Aligned_cols=97 Identities=12% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f 210 (484)
+.......+..+|++++|+|+.++.... ...+...+... ..+.|+++++||+|+............+.-.. ..-.+
T Consensus 71 ~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~ 150 (173)
T cd04155 71 IRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTW 150 (173)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeE
Confidence 4445556778999999999998864221 11222222111 13589999999999986544444433332110 00000
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHH
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLK 251 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk 251 (484)
.....|+.++.|.+.+++.|.
T Consensus 151 --------------------~~~~~Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 151 --------------------HIQACSAKTGEGLQEGMNWVC 171 (173)
T ss_pred --------------------EEEEeECCCCCCHHHHHHHHh
Confidence 011356678889998888764
No 463
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=96.21 E-value=0.012 Score=55.61 Aligned_cols=49 Identities=22% Similarity=0.203 Sum_probs=35.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.+..+|+||.|.|..++.+..+- .....+....++.|+|||.||+||..
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 46789999999999998765432 12233443335679999999999963
No 464
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=96.21 E-value=0.014 Score=54.41 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|++|.|.|..++.+... ......+....++.|+|||.||+||.+
T Consensus 72 ~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 72 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 35678999999999998865433 122233444445789999999999953
No 465
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=96.20 E-value=0.01 Score=56.26 Aligned_cols=53 Identities=26% Similarity=0.315 Sum_probs=36.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee--eeEEEEeCC---cEEEEecCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPG 316 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr--~~~~~~l~~---~i~liDTPG 316 (484)
..+|.++|.+|||||+|+........ ++.+.+|.- ....+.++. .+.|+||+|
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g 60 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAG 60 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccc--ccccCCCccccceEEEEECCEEEEEEEEcCCC
Confidence 46899999999999999998887764 333333322 233344443 467999999
No 466
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.20 E-value=0.013 Score=60.09 Aligned_cols=95 Identities=17% Similarity=0.222 Sum_probs=53.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhc
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANL 221 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~ 221 (484)
+++.||+++.|++ .|.+.....+..-+.+. --|+|+||+|+++..........++..+...... ..
T Consensus 166 i~~~aD~vlvv~~--p~~gd~iq~~k~gi~E~----aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~--------~~ 231 (332)
T PRK09435 166 VAGMVDFFLLLQL--PGAGDELQGIKKGIMEL----ADLIVINKADGDNKTAARRAAAEYRSALRLLRPK--------DP 231 (332)
T ss_pred HHHhCCEEEEEec--CCchHHHHHHHhhhhhh----hheEEeehhcccchhHHHHHHHHHHHHHhccccc--------cc
Confidence 6788999999976 23332222222212221 1389999999998765555555555433211000 00
Q ss_pred CCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.|. .....+|+.+..|++.|++.|..+.+
T Consensus 232 ~w~-----~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 232 GWQ-----PPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred CCC-----CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 000 01224566788899999999988765
No 467
>PRK14845 translation initiation factor IF-2; Provisional
Probab=96.17 E-value=0.023 Score=66.18 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|..........+|+++.|+|+.+.+..........+.. .+.|+|+|+||+|+++.
T Consensus 539 F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~ 593 (1049)
T PRK14845 539 FTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPG 593 (1049)
T ss_pred HHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccc
Confidence 43333445667999999999998765544444455544 36899999999999864
No 468
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=96.17 E-value=0.0054 Score=64.82 Aligned_cols=25 Identities=24% Similarity=0.607 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+.++|+++|..++|||||+.+|.+.
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~~L~~~ 32 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQALTGV 32 (411)
T ss_pred CcEEEEEEccCCCCHHHHHHHhhCe
Confidence 5689999999999999999999763
No 469
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=96.16 E-value=0.021 Score=56.10 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH---------hCCCCceeEEeeccCCCCH-H-HHHHHHHHHHhcCCeE
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMK---------AGPDKHLVLLLNKIDLVPR-E-SVEKWLKYLREELPAV 208 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~---------~~~~K~~IlVLNKiDLvp~-e-~~~~wl~~l~~~~p~v 208 (484)
.+..+|++|+|.|.-++.+... ..++.+... ...+.|+|+|.||+||... + ......+++.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 4568999999999988754221 122222211 1246899999999999742 1 1222223333222221
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.| ..|+.++.|++.|++.|...+
T Consensus 148 ~~-----------------------evSAktg~gI~elf~~L~~~~ 170 (247)
T cd04143 148 YF-----------------------EVSAKKNSNLDEMFRALFSLA 170 (247)
T ss_pred EE-----------------------EEeCCCCCCHHHHHHHHHHHh
Confidence 22 345567789999998887654
No 470
>PTZ00369 Ras-like protein; Provisional
Probab=96.13 E-value=0.014 Score=54.42 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=33.3
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCC
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp 190 (484)
...+..+|++|.|.|+.++-+... ......+... ..+.|+|+|.||+||.+
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 345668999999999998854211 1111222221 23678999999999964
No 471
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.13 E-value=0.052 Score=57.98 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCC-------CCCHHHHHHHHHhCCCCceeEEeeccCC
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDKHLVLLLNKIDL 188 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~-------~r~~~le~~i~~~~~~K~~IlVLNKiDL 188 (484)
.+.|.+++...+..+|++|.|+||..... ........++... +-+++|+++||+|+
T Consensus 95 h~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 95 HRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GVKQMIVCINKMDD 157 (446)
T ss_pred hHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CCCeEEEEEEcccc
Confidence 35689999999999999999999998642 1122222233222 23457789999994
No 472
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.09 E-value=0.016 Score=53.79 Aligned_cols=50 Identities=20% Similarity=0.199 Sum_probs=35.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.....+|++|.|.|..++.+... ......+.+..++.|+|||.||+||.+
T Consensus 68 ~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 68 LCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 34678999999999998876533 122223344446789999999999954
No 473
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=96.07 E-value=0.015 Score=52.82 Aligned_cols=87 Identities=10% Similarity=0.111 Sum_probs=51.7
Q ss_pred hhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC--CCCceeEEeeccCCC---CHHHHHHHHHHHHhcC-CeEEEEccch
Q 011507 143 IEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLV---PRESVEKWLKYLREEL-PAVAFKCSTQ 215 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~r~-~~le~~i~~~~--~~K~~IlVLNKiDLv---p~e~~~~wl~~l~~~~-p~v~f~~~~~ 215 (484)
...+|+++.|.|..++-+... ......+.... .+.|+++|.||+||. +++........|.+.. ....|
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~----- 137 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYY----- 137 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEE-----
Confidence 357999999999999876543 22222233222 356899999999984 2222223333333222 22222
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|++.+++.+.+
T Consensus 138 ------------------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 138 ------------------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred ------------------EEecCCCCCHHHHHHHHHh
Confidence 2455677888888877653
No 474
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=96.05 E-value=0.019 Score=54.53 Aligned_cols=90 Identities=11% Similarity=0.109 Sum_probs=53.0
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
....+..+|++|.|.|+.++.+...- .....+....++.|+|||.||+||........-..+. .......|
T Consensus 61 ~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~-~~~~~~~~------- 132 (200)
T smart00176 61 RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFH-RKKNLQYY------- 132 (200)
T ss_pred hHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHH-HHcCCEEE-------
Confidence 34567789999999999988543221 1112233333568999999999996432211111211 12222222
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+..+.|++.+++.|..
T Consensus 133 ----------------e~SAk~~~~v~~~F~~l~~ 151 (200)
T smart00176 133 ----------------DISAKSNYNFEKPFLWLAR 151 (200)
T ss_pred ----------------EEeCCCCCCHHHHHHHHHH
Confidence 2455677888888888764
No 475
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=96.02 E-value=0.015 Score=55.97 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=51.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
....+|++|.|.|..++.+... .++. .+.....+.|+|||.||+||........-+.+.+ ....-.|
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~~~i~~w~~-~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~-~~~~~~~--------- 150 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTYKNVPTWHR-DLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-KKNLQYY--------- 150 (219)
T ss_pred HcccccEEEEEEeCCCHHHHHHHHHHHH-HHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHH-hcCCEEE---------
Confidence 4678999999999998854322 1222 2223335789999999999965432111112222 2222222
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..|+.++.|++.+++.|..
T Consensus 151 --------------e~SAk~~~~i~~~f~~l~~ 169 (219)
T PLN03071 151 --------------EISAKSNYNFEKPFLYLAR 169 (219)
T ss_pred --------------EcCCCCCCCHHHHHHHHHH
Confidence 2455677888888877654
No 476
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=95.99 E-value=0.011 Score=54.93 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=33.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.+..+|++|.|.|..++.+...- .....+....++.|+|+|.||+||.+
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 34689999999999877543221 12233333345789999999999965
No 477
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=95.95 E-value=0.02 Score=53.16 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|.+|.|.|..++.+...- .....+....++-|+|||.||+||.+
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 356789999999999998775442 12223333345689999999999965
No 478
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=95.95 E-value=0.017 Score=43.36 Aligned_cols=42 Identities=31% Similarity=0.460 Sum_probs=25.3
Q ss_pred cCEEEEEEecCCCCCCCCH---HHHHHHHHhCCCCceeEEeeccC
Q 011507 146 SDVILEVLDARDPLGTRCI---DMEKMVMKAGPDKHLVLLLNKID 187 (484)
Q Consensus 146 sDvIleVlDARdPl~~r~~---~le~~i~~~~~~K~~IlVLNKiD 187 (484)
.++|++++|...-=|+.-. .+.+.|+...+++|++.|+||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 6899999998755444222 24445556667899999999998
No 479
>PRK04004 translation initiation factor IF-2; Validated
Probab=95.94 E-value=0.058 Score=59.57 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|.|+|+.+.+..........+.. .+.|+|+++||+|+++
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~ 137 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIP 137 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCch
Confidence 44444456778999999999998543333333344433 3689999999999975
No 480
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=95.92 E-value=0.017 Score=52.58 Aligned_cols=57 Identities=19% Similarity=0.349 Sum_probs=41.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
+.++|.++|..|+||+|+++.|.+...-.++++-|.--.--++ -+.++.+.|.-|=.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~ 71 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY-KGYTLNIWDVGGQK 71 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe-cceEEEEEEcCCcc
Confidence 4799999999999999999999999877777766643221111 14467788877754
No 481
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.91 E-value=0.035 Score=50.17 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---HhC-CCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---KAG-PDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~~~-~~K~~IlVLNKiDLvp~ 191 (484)
|.......+..+|+++.|.|..++-+. ..+..++. ... .+.|+++|.||+||...
T Consensus 62 ~~~~~~~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 62 YQTITKQYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120 (161)
T ss_pred HHhhHHHHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 434445567789999999999887432 12233222 222 35789999999999643
No 482
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=95.89 E-value=0.028 Score=55.65 Aligned_cols=69 Identities=19% Similarity=0.255 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~ 205 (484)
.|..+....+..+|.++.|+|+.+........+.+.+.. .+.|.++|+||+|+.... ...-+..+++.+
T Consensus 76 ~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D~~~~~-~~~~~~~l~~~~ 144 (268)
T cd04170 76 DFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMDRERAD-FDKTLAALQEAF 144 (268)
T ss_pred HHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCccCCCC-HHHHHHHHHHHh
Confidence 466788889999999999999998765544444444443 368999999999998652 334455565544
No 483
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=95.81 E-value=0.023 Score=64.12 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
|..+....+..+|++|.|+||.+........+...+.. .+.|+|+|+||+|+....
T Consensus 88 ~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 88 FTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred hhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEECCCCCCCC
Confidence 44578888999999999999998766555555555544 368999999999998543
No 484
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=95.74 E-value=0.023 Score=53.67 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=19.2
Q ss_pred ceEEEEecCCCCchhHHHH-Hhhc
Q 011507 262 SITVGVIGLPNVGKSSLIN-SLKR 284 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN-~L~~ 284 (484)
.++|.++|-+|||||||++ .+.+
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~ 25 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACN 25 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999996 4443
No 485
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.72 E-value=0.032 Score=59.53 Aligned_cols=94 Identities=24% Similarity=0.269 Sum_probs=59.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC--CHHHHHHHHHHHHhcCCeEEEEc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV--PRESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv--p~e~~~~wl~~l~~~~p~v~f~~ 212 (484)
|-.|+.+++..+|-+|.|+||-.-.- ...+..+-.....+-.+|.|||||||- +++.+..-+.-+....+.-+
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvq--AQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~--- 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQ--AQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV--- 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCch--HHHHHHHHHHHHcCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce---
Confidence 66789999999999999999986432 222333333333467889999999993 44544444433333322222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
...|+..+.|++.|++.+-.-
T Consensus 213 --------------------i~vSAK~G~~v~~lL~AII~r 233 (650)
T KOG0462|consen 213 --------------------IYVSAKTGLNVEELLEAIIRR 233 (650)
T ss_pred --------------------EEEEeccCccHHHHHHHHHhh
Confidence 234566777777777766544
No 486
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=95.70 E-value=0.034 Score=55.30 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
.|..+.+..+..+|.+|.|+|+.+........+.++... .+.|+++++||+|+....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~--~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL--RGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence 356678888999999999999988754333333333332 368999999999986543
No 487
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=95.67 E-value=0.04 Score=50.93 Aligned_cols=88 Identities=24% Similarity=0.280 Sum_probs=52.5
Q ss_pred HhhhcCEEEEEEecCCCCC--CCCHHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cC----CeEEEEcc
Q 011507 142 VIEVSDVILEVLDARDPLG--TRCIDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-EL----PAVAFKCS 213 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~--~r~~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~-~~----p~v~f~~~ 213 (484)
....+|.||+|+|+.|+-. .-...+.+++.. ...++|+++++||.|+.+.-.......+|.- .. +...+
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~--- 154 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVF--- 154 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEE---
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEE---
Confidence 4568999999999998741 111123333321 1236899999999998654333333344321 11 22122
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
..++.++.|..+.++.|.+
T Consensus 155 --------------------~~sa~~g~Gv~e~l~WL~~ 173 (175)
T PF00025_consen 155 --------------------SCSAKTGEGVDEGLEWLIE 173 (175)
T ss_dssp --------------------EEBTTTTBTHHHHHHHHHH
T ss_pred --------------------eeeccCCcCHHHHHHHHHh
Confidence 3455678898888888765
No 488
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.65 E-value=0.047 Score=55.66 Aligned_cols=58 Identities=22% Similarity=0.173 Sum_probs=37.7
Q ss_pred CCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHH-HHHhhh
Q 011507 176 DKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIK-LLKNYS 254 (484)
Q Consensus 176 ~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~-~Lk~~~ 254 (484)
.||.|+|+||+|+...+...+++ ...++... ..++|+....+.+.|.+ .+..|+
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~~~~l---~~~~~~~~----------------------iI~iSA~~e~~L~~L~~~~i~~~l 268 (318)
T cd01899 214 SKPMVIAANKADIPDAENNISKL---RLKYPDEI----------------------VVPTSAEAELALRRAAKQGLIKYD 268 (318)
T ss_pred CCcEEEEEEHHHccChHHHHHHH---HhhCCCCe----------------------EEEEeCcccccHHHHHHhhHHHhC
Confidence 47999999999997655433333 22222111 11345566778899997 588999
Q ss_pred hhcc
Q 011507 255 RSHE 258 (484)
Q Consensus 255 ~~~~ 258 (484)
+.++
T Consensus 269 Pe~~ 272 (318)
T cd01899 269 PGDS 272 (318)
T ss_pred CCCC
Confidence 8765
No 489
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=95.65 E-value=0.033 Score=49.43 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=45.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi 317 (484)
.+.++++++|.-|+||+|++..|.+..+..+.++-|.......+.-+-++.+.|..|=
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGq 72 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQ 72 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCc
Confidence 4679999999999999999999999988777777776444333333456778888775
No 490
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.58 E-value=0.017 Score=61.70 Aligned_cols=57 Identities=30% Similarity=0.608 Sum_probs=47.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e--CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L--DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l--~~~i~liDTPGi~ 318 (484)
++.-|-|+|.--=||+||+.+|.++.++ .+..-|+|.++--+. + +..|.|+||||-.
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHa 212 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLPSGKSITFLDTPGHA 212 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCcee-hhhcCCccceeceEEEecCCCCEEEEecCCcHH
Confidence 5778999999999999999999999875 445669999876544 3 4679999999975
No 491
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=95.57 E-value=0.02 Score=54.34 Aligned_cols=70 Identities=20% Similarity=0.237 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhc-CEEEEEEecCCCCCCCCHH----HHHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC
Q 011507 135 FYKELVKVIEVS-DVILEVLDARDPLGTRCID----MEKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL 205 (484)
Q Consensus 135 ~~~el~kvie~s-DvIleVlDARdPl~~r~~~----le~~i~~---~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~ 205 (484)
+...+...+..+ +.||+|+|+.+... .... +..++.. ..++.|+++|.||+||........+.++|.++.
T Consensus 61 ~~~~~~~~~~~~~~~vV~VvD~~~~~~-~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei 138 (203)
T cd04105 61 LRDKLLETLKNSAKGIVFVVDSATFQK-NLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKEL 138 (203)
T ss_pred HHHHHHHHHhccCCEEEEEEECccchh-HHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHH
Confidence 445556677777 99999999998742 1222 2222221 124789999999999976544444555555543
No 492
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.54 E-value=0.092 Score=54.89 Aligned_cols=101 Identities=19% Similarity=0.140 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEc
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~ 212 (484)
..|.+.+-..+.-+|..+.|+|+-+-+....-+-.-++ +..+.++.|+|+||+|+++.+.++.-.+.+..... +.+
T Consensus 61 ~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iL-dllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~---l~~ 136 (447)
T COG3276 61 PDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLIL-DLLGIKNGIIVLTKADRVDEARIEQKIKQILADLS---LAN 136 (447)
T ss_pred HHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHH-HhcCCCceEEEEeccccccHHHHHHHHHHHHhhcc---ccc
Confidence 45788888888899999999999655443332222222 22356777999999999987665554444443322 110
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
+ .....|+..+.|++.|.+.|.+..
T Consensus 137 ~-----------------~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 137 A-----------------KIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred c-----------------cccccccccCCCHHHHHHHHHHhh
Confidence 0 112456678889999999988877
No 493
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=95.54 E-value=0.034 Score=50.38 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=37.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCC-CCeeeeeEEEEeC---CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGAT-PGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~-pg~Tr~~~~~~l~---~~i~liDTPGi~~ 319 (484)
..++|.+||-.+||||||+-+......-.-.+. -|+--......++ -.+-|.||.|--.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqEr 72 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQER 72 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHh
Confidence 468999999999999999999886543222221 2222222223333 3578899999643
No 494
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.51 E-value=0.023 Score=60.06 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=24.4
Q ss_pred ceEEEEecCCCCchhHHHHHhh------cCccceec
Q 011507 262 SITVGVIGLPNVGKSSLINSLK------RCHVANVG 291 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~------~~~~~~v~ 291 (484)
+..|++||.+||||||++..|. |.+++-++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~ 135 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVC 135 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 5689999999999999999997 55554443
No 495
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.064 Score=60.09 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=62.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-----cceecC------------CCCeeeeeE--EEEe--CCcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-----VANVGA------------TPGLTRSMQ--EVQL--DKNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-----~~~v~~------------~pg~Tr~~~--~~~l--~~~i~liDTPGi~~ 319 (484)
.-.+|||+|.--.|||||.-+|+-.- ...|.. ..|.|-..- ...+ +..|.||||||-++
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 45689999999999999999998321 111110 123333322 1222 26899999999987
Q ss_pred CCCCChHHHHHHhccccccccCCCch---hH-HHHH---hhCCcchhhhhcCCCCC
Q 011507 320 LKSGENDASIALRNCKRIEKLDDPVG---PV-KEIL---NRCPANLLISLYKLPSF 368 (484)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~d~~~---~v-~~il---~~~~~~~l~~~~ki~~~ 368 (484)
.. .++..+|+.|+....+.|.+. +. ..++ .+..-+.+..+||+|..
T Consensus 89 Ft---~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 89 FT---IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRL 141 (697)
T ss_pred cH---HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccc
Confidence 64 345556666665544444333 21 2233 33444667777998864
No 496
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=95.41 E-value=0.02 Score=61.05 Aligned_cols=158 Identities=20% Similarity=0.186 Sum_probs=91.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcc--------------ceecCCCCeeeeeEEEE---eC---CcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHV--------------ANVGATPGLTRSMQEVQ---LD---KNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~--------------~~v~~~pg~Tr~~~~~~---l~---~~i~liDTPGi~~~~ 321 (484)
--+++||-.--=|||||...|+..-- ..+-...|+|-..|.-. -+ .-+-||||||-++..
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 34688899999999999999985321 23445668888777532 23 457899999998774
Q ss_pred CCChHHHHHHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHH
Q 011507 322 SGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIIL 401 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l 401 (484)
. ++...|..|+.+..+.|...-+.. .+.-.| .+|..
T Consensus 140 ~---EVsRslaac~G~lLvVDA~qGvqA-------------------QT~anf--~lAfe-------------------- 175 (650)
T KOG0462|consen 140 G---EVSRSLAACDGALLVVDASQGVQA-------------------QTVANF--YLAFE-------------------- 175 (650)
T ss_pred c---eehehhhhcCceEEEEEcCcCchH-------------------HHHHHH--HHHHH--------------------
Confidence 3 334455566655444443321110 000011 12211
Q ss_pred HHHHcCCCCcccCCCCCCCCCchhhhhHHHhhhccc--hhhhhcccccccccCCCcCCCCCeeecCCCCc
Q 011507 402 HDWNEGKIPYYTMPPARDQGIPSEARIVSELGKEFN--VNEVYKNESSFIGSLKSVDDFQPVEVLPCCPL 469 (484)
Q Consensus 402 ~d~~~gki~~~~~pp~~~~~~~~~~~iv~~~~~~~~--~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~ 469 (484)
-.+..+.+.+++|.+...-..+.....+-|+ -++.+-.|+..+-+++++++++ +.-.|+...
T Consensus 176 -----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AI-I~rVPpP~~ 239 (650)
T KOG0462|consen 176 -----AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAI-IRRVPPPKG 239 (650)
T ss_pred -----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHH-HhhCCCCCC
Confidence 1133344555555443333334444444443 3467777888888888888888 777765543
No 497
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=95.38 E-value=0.016 Score=53.66 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=39.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-----eecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-----~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|.+.|-++||||||+|.+...+.. .+|. -+.|+.. .++. .++|.||-|=-.
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIga-dFltKev---~Vd~~~vtlQiWDTAGQER 70 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGA-DFLTKEV---QVDDRSVTLQIWDTAGQER 70 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccch-hheeeEE---EEcCeEEEEEEEecccHHH
Confidence 3588999999999999999999976632 2322 3556653 3333 467899998643
No 498
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.36 E-value=0.01 Score=54.70 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=33.7
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPG 316 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPG 316 (484)
.|+|+|.+++|||||++.|.+.........+.+||....... +....++++..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~ 56 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEE 56 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHH
Confidence 589999999999999999998653333444556665433222 22344444433
No 499
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.36 E-value=0.044 Score=52.09 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=37.6
Q ss_pred CCceeEEeeccCCCCH--HHHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 176 DKHLVLLLNKIDLVPR--ESVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 176 ~K~~IlVLNKiDLvp~--e~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.++.++|+||+||++. ..+.....++++.+|..++. ..|+.++.|.+.|++.+..+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~----------------------~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEII----------------------LMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEE----------------------EEECCCCCCHHHHHHHHHHh
Confidence 3677999999999864 23445555666554433221 34567788999999988764
No 500
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.32 E-value=0.018 Score=56.48 Aligned_cols=24 Identities=42% Similarity=0.800 Sum_probs=20.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+...|||-|.|++|||||+++|..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH
Confidence 578999999999999999999973
Done!