Query 011507
Match_columns 484
No_of_seqs 412 out of 2982
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:34:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011507.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011507hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 1.2E-43 4.1E-48 352.7 25.1 253 134-416 12-279 (282)
2 3cnl_A YLQF, putative uncharac 100.0 3.2E-40 1.1E-44 324.7 15.0 237 135-418 11-249 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 7.7E-24 2.6E-28 217.8 15.5 158 132-321 58-226 (369)
4 3h2y_A GTPase family protein; 99.9 1.2E-23 3.9E-28 216.4 13.1 158 131-321 55-225 (368)
5 1mky_A Probable GTP-binding pr 99.8 5.3E-20 1.8E-24 193.4 15.1 212 131-369 67-306 (439)
6 2hjg_A GTP-binding protein ENG 99.8 8.5E-20 2.9E-24 191.7 10.4 211 131-369 68-300 (436)
7 1t9h_A YLOQ, probable GTPase E 99.8 7.8E-20 2.7E-24 182.9 6.2 143 142-321 83-238 (307)
8 4dcu_A GTP-binding protein ENG 99.8 7E-19 2.4E-23 185.7 11.8 211 130-368 87-319 (456)
9 2rcn_A Probable GTPase ENGC; Y 99.7 2.8E-18 9.4E-23 174.9 8.0 152 132-320 117-281 (358)
10 2yv5_A YJEQ protein; hydrolase 99.7 2.2E-16 7.5E-21 157.9 13.7 141 142-319 76-228 (302)
11 2e87_A Hypothetical protein PH 99.6 1.1E-17 3.9E-22 171.0 0.4 166 132-321 43-228 (357)
12 3iev_A GTP-binding protein ERA 99.6 2.7E-16 9.2E-21 157.6 6.4 175 261-481 9-197 (308)
13 1u0l_A Probable GTPase ENGC; p 99.6 1.5E-15 5.3E-20 151.6 11.9 144 142-321 81-235 (301)
14 1wf3_A GTP-binding protein; GT 99.6 2.4E-16 8.2E-21 157.6 3.7 171 261-481 6-189 (301)
15 1ega_A Protein (GTP-binding pr 99.5 4.5E-15 1.5E-19 148.3 4.1 178 261-481 7-190 (301)
16 1wxq_A GTP-binding protein; st 99.5 3.6E-15 1.2E-19 154.6 0.1 211 263-481 1-286 (397)
17 4a9a_A Ribosome-interacting GT 99.4 4.9E-14 1.7E-18 144.5 6.2 87 262-349 72-165 (376)
18 3lxw_A GTPase IMAP family memb 99.2 4.4E-13 1.5E-17 129.9 -1.8 60 261-320 20-83 (247)
19 1mky_A Probable GTP-binding pr 99.2 8.6E-12 3E-16 130.8 5.9 106 263-368 2-123 (439)
20 2xtp_A GTPase IMAP family memb 99.1 5.9E-12 2E-16 122.2 1.5 63 261-323 21-87 (260)
21 2qtf_A Protein HFLX, GTP-bindi 99.1 3.3E-12 1.1E-16 130.8 -1.4 107 262-369 178-306 (364)
22 2hjg_A GTP-binding protein ENG 99.1 2.6E-11 9E-16 127.0 5.2 106 263-368 4-124 (436)
23 1lnz_A SPO0B-associated GTP-bi 99.1 3E-11 1E-15 122.6 3.6 168 263-476 159-342 (342)
24 1svi_A GTP-binding protein YSX 99.1 8E-11 2.8E-15 108.1 5.5 61 261-321 22-83 (195)
25 4dcu_A GTP-binding protein ENG 99.1 7.7E-11 2.6E-15 124.1 6.1 107 262-368 23-144 (456)
26 3gee_A MNME, tRNA modification 99.0 1.2E-10 4E-15 123.3 5.7 111 260-370 231-358 (476)
27 1jal_A YCHF protein; nucleotid 99.0 6E-11 2.1E-15 121.0 3.2 82 262-344 2-107 (363)
28 3def_A T7I23.11 protein; chlor 99.0 8E-10 2.8E-14 107.6 10.5 86 245-332 21-109 (262)
29 4dhe_A Probable GTP-binding pr 99.0 2.1E-10 7.3E-15 107.8 6.2 109 261-369 28-158 (223)
30 1xzp_A Probable tRNA modificat 99.0 1.2E-10 4.1E-15 123.4 4.8 109 261-369 242-364 (482)
31 3pqc_A Probable GTP-binding pr 99.0 2.5E-10 8.5E-15 104.3 6.3 108 261-368 22-146 (195)
32 1h65_A Chloroplast outer envel 99.0 1E-09 3.4E-14 107.3 10.9 62 261-322 38-102 (270)
33 3i8s_A Ferrous iron transport 99.0 1.8E-10 6.2E-15 113.2 5.6 104 262-366 3-123 (274)
34 3iby_A Ferrous iron transport 99.0 2.1E-10 7.1E-15 111.7 5.6 103 263-366 2-121 (256)
35 2cxx_A Probable GTP-binding pr 99.0 1.1E-09 3.8E-14 99.7 9.6 56 263-320 2-57 (190)
36 2ohf_A Protein OLA1, GTP-bindi 99.0 2.6E-10 8.8E-15 117.5 5.7 83 260-343 20-126 (396)
37 2aka_B Dynamin-1; fusion prote 99.0 2.7E-11 9.3E-16 119.5 -1.6 35 261-295 25-64 (299)
38 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 6E-10 2E-14 114.8 6.0 83 260-342 18-124 (392)
39 3qq5_A Small GTP-binding prote 98.9 7.5E-10 2.6E-14 115.4 6.4 82 261-342 33-122 (423)
40 3a1s_A Iron(II) transport prot 98.9 1.2E-09 4.2E-14 106.3 6.5 105 261-366 4-121 (258)
41 1jwy_B Dynamin A GTPase domain 98.9 2.2E-09 7.6E-14 106.7 7.3 34 261-294 23-61 (315)
42 2gj8_A MNME, tRNA modification 98.9 2.1E-09 7.3E-14 97.4 6.1 60 261-320 3-65 (172)
43 3k53_A Ferrous iron transport 98.9 2.6E-09 8.8E-14 104.5 6.9 104 262-366 3-120 (271)
44 3lxx_A GTPase IMAP family memb 98.8 3E-09 1E-13 101.7 6.7 63 261-324 28-95 (239)
45 2j69_A Bacterial dynamin-like 98.8 2.1E-09 7.3E-14 118.8 5.9 108 261-368 68-243 (695)
46 2dyk_A GTP-binding protein; GT 98.8 1.6E-09 5.4E-14 95.8 3.7 105 263-367 2-120 (161)
47 1zj6_A ADP-ribosylation factor 98.8 2.6E-09 9E-14 97.5 5.1 165 261-472 15-184 (187)
48 1f5n_A Interferon-induced guan 98.8 3.9E-09 1.3E-13 114.0 7.1 61 261-321 37-105 (592)
49 2qpt_A EH domain-containing pr 98.8 2.4E-09 8.1E-14 115.3 4.9 109 261-369 64-232 (550)
50 2dby_A GTP-binding protein; GD 98.8 2.5E-09 8.7E-14 109.4 4.8 81 263-344 2-110 (368)
51 3b1v_A Ferrous iron uptake tra 98.8 4.6E-09 1.6E-13 103.1 6.4 82 262-344 3-91 (272)
52 3gj0_A GTP-binding nuclear pro 98.8 3.9E-09 1.3E-13 99.2 4.7 59 261-319 14-76 (221)
53 1pui_A ENGB, probable GTP-bind 98.8 4.8E-09 1.6E-13 97.5 5.0 61 260-320 24-85 (210)
54 1x3s_A RAS-related protein RAB 98.7 5.1E-09 1.7E-13 95.6 4.8 79 261-342 14-96 (195)
55 3geh_A MNME, tRNA modification 98.7 1.4E-09 4.8E-14 114.6 0.7 109 260-368 222-343 (462)
56 3zvr_A Dynamin-1; hydrolase, D 98.7 1.1E-08 3.8E-13 113.1 7.9 40 437-480 250-292 (772)
57 2nzj_A GTP-binding protein REM 98.7 1.3E-08 4.4E-13 91.1 6.8 59 261-319 3-64 (175)
58 4djt_A GTP-binding nuclear pro 98.7 1.3E-08 4.4E-13 95.2 6.5 80 261-343 10-94 (218)
59 2wji_A Ferrous iron transport 98.7 1.6E-08 5.5E-13 90.6 6.8 58 262-320 3-63 (165)
60 1ek0_A Protein (GTP-binding pr 98.7 2.1E-08 7.2E-13 89.0 7.3 80 262-344 3-86 (170)
61 3t5d_A Septin-7; GTP-binding p 98.7 1.6E-08 5.4E-13 99.1 6.4 59 262-320 8-78 (274)
62 2ged_A SR-beta, signal recogni 98.7 3.5E-08 1.2E-12 90.2 7.8 135 243-381 26-184 (193)
63 3clv_A RAB5 protein, putative; 98.7 4.2E-08 1.4E-12 89.6 8.1 103 261-366 6-158 (208)
64 2qu8_A Putative nucleolar GTP- 98.6 2.4E-08 8.3E-13 94.5 6.4 59 261-320 28-89 (228)
65 2wjg_A FEOB, ferrous iron tran 98.6 3.2E-08 1.1E-12 89.9 6.3 59 261-320 6-67 (188)
66 4dsu_A GTPase KRAS, isoform 2B 98.6 1.2E-07 4.1E-12 85.8 9.6 103 261-368 3-122 (189)
67 1z0j_A RAB-22, RAS-related pro 98.6 5E-08 1.7E-12 86.6 6.9 78 261-341 5-86 (170)
68 3q72_A GTP-binding protein RAD 98.6 3.6E-08 1.2E-12 87.4 5.8 58 262-320 2-62 (166)
69 2h17_A ADP-ribosylation factor 98.6 3.5E-08 1.2E-12 89.6 5.7 105 261-369 20-136 (181)
70 3cph_A RAS-related protein SEC 98.6 6.3E-08 2.1E-12 89.8 7.5 104 260-367 18-137 (213)
71 2x2e_A Dynamin-1; nitration, h 98.6 4.4E-08 1.5E-12 99.5 7.0 35 261-295 30-69 (353)
72 2efe_B Small GTP-binding prote 98.6 1.4E-07 4.8E-12 84.8 9.1 105 261-368 11-130 (181)
73 3t5g_A GTP-binding protein RHE 98.6 1.6E-07 5.5E-12 84.7 9.3 103 261-367 5-123 (181)
74 1c1y_A RAS-related protein RAP 98.6 1.5E-07 5.2E-12 83.2 8.7 101 262-367 3-120 (167)
75 2x77_A ADP-ribosylation factor 98.6 5.2E-08 1.8E-12 88.9 5.5 105 261-369 21-137 (189)
76 1upt_A ARL1, ADP-ribosylation 98.5 9.2E-08 3.2E-12 85.1 6.7 59 260-319 5-63 (171)
77 2ce2_X GTPase HRAS; signaling 98.5 4.1E-07 1.4E-11 79.9 10.8 102 262-368 3-121 (166)
78 3dpu_A RAB family protein; roc 98.5 1.1E-07 3.7E-12 102.0 7.9 180 241-471 14-213 (535)
79 3tkl_A RAS-related protein RAB 98.5 3E-07 1E-11 83.8 9.9 104 261-368 15-134 (196)
80 1z0f_A RAB14, member RAS oncog 98.5 1.6E-07 5.3E-12 84.1 7.7 80 261-343 14-97 (179)
81 1kao_A RAP2A; GTP-binding prot 98.5 1.5E-07 5.2E-12 82.9 7.3 76 262-342 3-83 (167)
82 2fg5_A RAB-22B, RAS-related pr 98.5 1.3E-07 4.4E-12 86.7 6.9 59 261-319 22-84 (192)
83 3iev_A GTP-binding protein ERA 98.5 1.9E-07 6.5E-12 93.1 8.5 106 129-258 76-184 (308)
84 1fzq_A ADP-ribosylation factor 98.5 9.2E-08 3.2E-12 87.0 5.6 78 261-342 15-92 (181)
85 4bas_A ADP-ribosylation factor 98.5 7.8E-08 2.7E-12 88.0 5.0 79 261-343 16-96 (199)
86 1moz_A ARL1, ADP-ribosylation 98.5 1.6E-07 5.5E-12 84.7 7.0 58 261-320 17-75 (183)
87 2oil_A CATX-8, RAS-related pro 98.5 2.4E-07 8.3E-12 84.6 8.3 80 261-343 24-107 (193)
88 1ksh_A ARF-like protein 2; sma 98.5 1.5E-07 5.1E-12 85.4 6.7 57 261-318 17-73 (186)
89 1r2q_A RAS-related protein RAB 98.5 2E-07 6.8E-12 82.6 7.1 79 261-342 5-87 (170)
90 3kkq_A RAS-related protein M-R 98.5 5.5E-07 1.9E-11 81.2 10.2 103 261-368 17-136 (183)
91 2atv_A RERG, RAS-like estrogen 98.5 3.2E-07 1.1E-11 84.3 8.6 79 261-343 27-108 (196)
92 2www_A Methylmalonic aciduria 98.5 6.3E-08 2.2E-12 98.4 4.2 24 261-284 73-96 (349)
93 2bcg_Y Protein YP2, GTP-bindin 98.5 5E-07 1.7E-11 83.5 9.8 104 261-368 7-126 (206)
94 2bov_A RAla, RAS-related prote 98.5 3.2E-07 1.1E-11 84.4 8.5 102 261-367 13-131 (206)
95 2p5s_A RAS and EF-hand domain 98.5 1.9E-07 6.4E-12 86.1 6.8 80 261-343 27-110 (199)
96 3oes_A GTPase rhebl1; small GT 98.5 2.4E-07 8.2E-12 85.5 7.4 79 260-343 22-105 (201)
97 1wms_A RAB-9, RAB9, RAS-relate 98.5 2.2E-07 7.6E-12 83.2 7.0 58 261-318 6-67 (177)
98 1u8z_A RAS-related protein RAL 98.4 3E-07 1E-11 81.1 7.3 77 261-342 3-84 (168)
99 2g6b_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 82.3 7.3 79 261-342 9-92 (180)
100 1z2a_A RAS-related protein RAB 98.4 3.2E-07 1.1E-11 81.1 6.9 79 261-342 4-86 (168)
101 3j2k_7 ERF3, eukaryotic polype 98.4 2.1E-07 7.2E-12 97.4 6.3 106 260-368 15-168 (439)
102 2lkc_A Translation initiation 98.4 1E-07 3.5E-12 85.5 3.4 58 261-319 7-67 (178)
103 3tw8_B RAS-related protein RAB 98.4 3.7E-07 1.3E-11 81.8 7.2 59 261-320 8-71 (181)
104 3r7w_A Gtpase1, GTP-binding pr 98.4 1.6E-07 5.3E-12 93.6 5.1 108 262-369 3-129 (307)
105 2b6h_A ADP-ribosylation factor 98.4 2.4E-07 8.3E-12 85.1 5.9 104 261-369 28-144 (192)
106 2gf9_A RAS-related protein RAB 98.4 3.9E-07 1.3E-11 83.0 7.3 59 261-319 21-83 (189)
107 1x3s_A RAS-related protein RAB 98.4 4.4E-07 1.5E-11 82.6 7.6 108 139-277 81-194 (195)
108 2h57_A ADP-ribosylation factor 98.4 2.9E-07 9.8E-12 84.0 6.2 57 261-319 20-79 (190)
109 1zbd_A Rabphilin-3A; G protein 98.4 4.9E-07 1.7E-11 83.2 7.8 80 261-343 7-90 (203)
110 1z08_A RAS-related protein RAB 98.4 4.1E-07 1.4E-11 80.7 7.0 58 261-318 5-66 (170)
111 2il1_A RAB12; G-protein, GDP, 98.4 4E-07 1.4E-11 83.5 7.1 79 261-342 25-107 (192)
112 1z06_A RAS-related protein RAB 98.4 4.3E-07 1.5E-11 82.8 7.2 80 261-342 19-102 (189)
113 1wf3_A GTP-binding protein; GT 98.4 4.7E-07 1.6E-11 90.0 8.0 107 127-258 68-175 (301)
114 1g16_A RAS-related protein SEC 98.4 3E-07 1E-11 81.5 6.0 78 262-343 3-85 (170)
115 2hxs_A RAB-26, RAS-related pro 98.4 3.7E-07 1.3E-11 81.8 6.6 80 261-343 5-89 (178)
116 1m2o_B GTP-binding protein SAR 98.4 3E-07 1E-11 84.4 5.9 58 261-320 22-80 (190)
117 3lvq_E ARF-GAP with SH3 domain 98.4 2.2E-07 7.6E-12 98.5 5.5 103 261-368 321-436 (497)
118 2y8e_A RAB-protein 6, GH09086P 98.4 5.2E-07 1.8E-11 80.7 7.1 78 261-342 13-95 (179)
119 2iwr_A Centaurin gamma 1; ANK 98.4 4.5E-07 1.5E-11 81.5 6.7 73 261-342 6-81 (178)
120 1f6b_A SAR1; gtpases, N-termin 98.4 2.6E-07 8.8E-12 85.5 5.0 57 261-319 24-81 (198)
121 1vg8_A RAS-related protein RAB 98.4 5.6E-07 1.9E-11 82.9 7.2 79 261-343 7-90 (207)
122 2erx_A GTP-binding protein DI- 98.3 3.6E-07 1.2E-11 81.0 5.4 76 262-342 3-83 (172)
123 1r8s_A ADP-ribosylation factor 98.3 4.2E-07 1.4E-11 80.3 5.8 75 263-342 1-76 (164)
124 2a9k_A RAS-related protein RAL 98.3 7.1E-07 2.4E-11 80.4 7.3 77 261-342 17-98 (187)
125 2a5j_A RAS-related protein RAB 98.3 5.2E-07 1.8E-11 82.4 6.2 80 261-343 20-103 (191)
126 3con_A GTPase NRAS; structural 98.3 7.4E-07 2.5E-11 81.0 7.1 56 261-318 20-80 (190)
127 3tr5_A RF-3, peptide chain rel 98.3 3.3E-07 1.1E-11 98.1 5.2 120 261-383 12-163 (528)
128 1zd9_A ADP-ribosylation factor 98.3 5.8E-07 2E-11 82.0 6.1 77 261-342 21-99 (188)
129 2bme_A RAB4A, RAS-related prot 98.3 7E-07 2.4E-11 80.7 6.6 57 261-318 9-70 (186)
130 1ky3_A GTP-binding protein YPT 98.3 4.8E-07 1.6E-11 81.1 5.1 58 261-318 7-69 (182)
131 3t1o_A Gliding protein MGLA; G 98.3 4.2E-07 1.4E-11 82.6 4.7 81 261-344 13-108 (198)
132 4dhe_A Probable GTP-binding pr 98.3 2.1E-06 7.1E-11 80.2 9.4 93 140-256 110-211 (223)
133 2xex_A Elongation factor G; GT 98.3 8.5E-07 2.9E-11 98.0 7.7 120 261-383 9-156 (693)
134 3bc1_A RAS-related protein RAB 98.3 1.1E-06 3.9E-11 79.4 7.3 80 261-343 10-103 (195)
135 1nrj_B SR-beta, signal recogni 98.3 1E-06 3.6E-11 82.1 7.2 56 261-320 11-68 (218)
136 3p26_A Elongation factor 1 alp 98.3 5.5E-07 1.9E-11 95.4 5.5 107 260-369 31-185 (483)
137 2ew1_A RAS-related protein RAB 98.3 1.2E-06 4.2E-11 81.3 7.2 58 261-318 25-86 (201)
138 2fn4_A P23, RAS-related protei 98.3 1.3E-06 4.4E-11 78.2 7.2 77 261-342 8-89 (181)
139 2fh5_B SR-beta, signal recogni 98.3 9.2E-07 3.1E-11 82.2 6.3 80 261-344 6-89 (214)
140 3o47_A ADP-ribosylation factor 98.2 1.5E-06 5E-11 87.5 7.9 102 261-369 164-280 (329)
141 2o52_A RAS-related protein RAB 98.2 9.6E-07 3.3E-11 81.5 6.0 79 261-343 24-107 (200)
142 2gf0_A GTP-binding protein DI- 98.2 1.4E-06 4.7E-11 79.6 6.9 78 261-342 7-88 (199)
143 3mca_A HBS1, elongation factor 98.2 3.5E-07 1.2E-11 99.2 3.3 60 260-319 175-267 (592)
144 3th5_A RAS-related C3 botulinu 97.5 1.5E-07 5E-12 87.1 0.0 57 261-319 29-90 (204)
145 3cpj_B GTP-binding protein YPT 98.2 1.2E-06 4.1E-11 82.3 6.3 80 261-343 12-95 (223)
146 3q85_A GTP-binding protein REM 98.2 1.3E-06 4.3E-11 77.6 6.1 59 262-320 2-64 (169)
147 2yc2_C IFT27, small RAB-relate 98.2 5.2E-07 1.8E-11 82.9 3.4 58 261-318 19-84 (208)
148 2j1l_A RHO-related GTP-binding 98.2 1.7E-06 5.9E-11 80.8 6.9 78 261-343 33-115 (214)
149 3dz8_A RAS-related protein RAB 98.2 4.8E-07 1.6E-11 82.7 3.0 79 261-342 22-104 (191)
150 2fv8_A H6, RHO-related GTP-bin 98.2 1.5E-06 5.1E-11 80.6 6.4 58 262-320 25-86 (207)
151 2hup_A RAS-related protein RAB 98.2 1.4E-06 4.7E-11 80.6 6.0 80 261-343 28-111 (201)
152 4gzl_A RAS-related C3 botulinu 98.2 1.9E-06 6.4E-11 79.9 6.9 58 261-320 29-91 (204)
153 3izy_P Translation initiation 98.2 2.6E-07 9.1E-12 98.8 0.5 57 261-318 3-63 (537)
154 1mh1_A RAC1; GTP-binding, GTPa 98.2 2.5E-06 8.4E-11 76.8 6.9 58 261-320 4-66 (186)
155 2q3h_A RAS homolog gene family 98.2 2.1E-06 7.3E-11 78.8 6.4 77 261-342 19-100 (201)
156 2gco_A H9, RHO-related GTP-bin 98.2 2E-06 6.9E-11 79.3 6.3 58 261-319 24-85 (201)
157 3t34_A Dynamin-related protein 98.2 1.8E-06 6.3E-11 87.6 6.5 27 263-289 35-61 (360)
158 2fu5_C RAS-related protein RAB 98.1 8.4E-07 2.9E-11 80.0 3.2 58 261-319 7-69 (183)
159 3reg_A RHO-like small GTPase; 98.1 3.3E-06 1.1E-10 77.1 7.2 56 261-318 22-82 (194)
160 3llu_A RAS-related GTP-binding 98.1 2.5E-06 8.7E-11 78.3 6.5 82 261-342 19-104 (196)
161 2cjw_A GTP-binding protein GEM 98.1 1.5E-06 5.1E-11 79.9 4.7 58 262-319 6-68 (192)
162 3izq_1 HBS1P, elongation facto 98.1 8.9E-07 3.1E-11 96.4 3.6 107 260-369 165-319 (611)
163 3q5d_A Atlastin-1; G protein, 98.1 1.6E-06 5.4E-11 90.6 4.9 61 261-321 66-154 (447)
164 3c5c_A RAS-like protein 12; GD 98.1 4.2E-06 1.4E-10 76.3 7.2 72 261-338 20-96 (187)
165 1m7b_A RND3/RHOE small GTP-bin 98.1 4.2E-06 1.4E-10 75.8 7.2 58 261-319 6-67 (184)
166 3l0i_B RAS-related protein RAB 98.1 6.5E-07 2.2E-11 82.4 1.6 58 261-319 32-94 (199)
167 2h5e_A Peptide chain release f 98.1 4.5E-06 1.5E-10 89.3 8.3 120 261-383 12-163 (529)
168 3cbq_A GTP-binding protein REM 98.1 1.7E-06 5.7E-11 79.8 4.2 58 261-319 22-84 (195)
169 3pqc_A Probable GTP-binding pr 98.1 5.7E-06 2E-10 74.9 7.7 94 138-255 97-193 (195)
170 1udx_A The GTP-binding protein 98.1 2.3E-06 8E-11 88.7 5.5 108 261-369 156-283 (416)
171 2f7s_A C25KG, RAS-related prot 98.1 2.3E-06 8E-11 79.6 4.8 79 261-343 24-117 (217)
172 2elf_A Protein translation elo 98.0 4.5E-06 1.5E-10 85.3 6.7 91 264-367 23-125 (370)
173 3p32_A Probable GTPase RV1496/ 98.0 5.2E-06 1.8E-10 84.3 7.1 38 261-298 78-121 (355)
174 1zun_B Sulfate adenylate trans 98.0 6E-06 2.1E-10 86.1 7.7 107 260-369 22-171 (434)
175 3bwd_D RAC-like GTP-binding pr 98.0 2E-06 6.8E-11 77.2 3.5 57 261-319 7-68 (182)
176 3cb4_D GTP-binding protein LEP 98.0 5.5E-06 1.9E-10 89.8 7.5 126 135-286 84-217 (599)
177 3cb4_D GTP-binding protein LEP 98.0 1.5E-06 5.1E-11 94.2 2.9 79 262-343 4-104 (599)
178 2g3y_A GTP-binding protein GEM 98.0 3.1E-06 1.1E-10 79.5 4.8 58 261-318 36-98 (211)
179 1wb1_A Translation elongation 98.0 1.7E-06 5.7E-11 91.6 3.2 106 261-369 18-139 (482)
180 3sjy_A Translation initiation 98.0 1.7E-05 5.7E-10 81.9 10.6 118 133-273 86-211 (403)
181 2qm8_A GTPase/ATPase; G protei 98.0 9.3E-07 3.2E-11 89.3 1.1 37 260-296 53-95 (337)
182 3ihw_A Centg3; RAS, centaurin, 98.0 7.7E-06 2.6E-10 74.5 7.2 56 261-318 19-78 (184)
183 2f9l_A RAB11B, member RAS onco 98.0 8E-06 2.7E-10 75.1 7.3 59 262-320 5-67 (199)
184 2zej_A Dardarin, leucine-rich 98.0 5.3E-06 1.8E-10 75.4 5.8 57 262-318 2-67 (184)
185 2p67_A LAO/AO transport system 98.0 3.7E-06 1.3E-10 84.9 5.0 101 261-369 55-208 (341)
186 1dar_A EF-G, elongation factor 98.0 8E-06 2.7E-10 90.1 8.1 120 261-383 11-158 (691)
187 1gwn_A RHO-related GTP-binding 98.0 8.6E-06 2.9E-10 75.7 7.1 58 261-319 27-88 (205)
188 2j0v_A RAC-like GTP-binding pr 98.0 7E-06 2.4E-10 76.0 6.4 78 261-343 8-90 (212)
189 2atx_A Small GTP binding prote 98.0 7.7E-06 2.6E-10 74.5 6.4 77 261-342 17-98 (194)
190 2c78_A Elongation factor TU-A; 98.0 3.3E-06 1.1E-10 87.2 4.3 107 261-370 10-143 (405)
191 3q3j_B RHO-related GTP-binding 98.0 9.5E-06 3.3E-10 75.8 7.1 58 261-319 26-87 (214)
192 2ywe_A GTP-binding protein LEP 98.0 1.4E-06 4.9E-11 94.3 1.5 80 261-343 5-106 (600)
193 1svi_A GTP-binding protein YSX 98.0 3.1E-05 1.1E-09 70.3 10.2 95 135-254 92-193 (195)
194 3sjy_A Translation initiation 98.0 4E-06 1.4E-10 86.6 4.4 106 261-369 7-143 (403)
195 1oix_A RAS-related protein RAB 98.0 1.3E-05 4.6E-10 73.3 7.4 59 261-319 28-90 (191)
196 1ega_A Protein (GTP-binding pr 97.9 5.6E-06 1.9E-10 82.1 5.0 99 135-258 78-177 (301)
197 2qag_A Septin-2, protein NEDD5 97.9 8.5E-06 2.9E-10 83.0 5.0 60 261-320 36-108 (361)
198 2rdo_7 EF-G, elongation factor 97.9 3E-05 1E-09 85.7 9.5 120 261-383 9-163 (704)
199 1g7s_A Translation initiation 97.9 3.5E-06 1.2E-10 91.3 1.9 103 261-368 4-135 (594)
200 1zo1_I IF2, translation initia 97.8 4.2E-06 1.4E-10 88.8 1.7 59 261-320 3-64 (501)
201 2wkq_A NPH1-1, RAS-related C3 97.8 3.9E-05 1.3E-09 75.9 8.6 78 260-342 153-235 (332)
202 1d2e_A Elongation factor TU (E 97.8 1.3E-05 4.6E-10 82.4 5.4 106 261-369 2-133 (397)
203 1f60_A Elongation factor EEF1A 97.8 4.2E-06 1.4E-10 88.0 1.3 105 261-368 6-158 (458)
204 2dyk_A GTP-binding protein; GT 97.8 1.9E-05 6.5E-10 69.1 5.1 93 132-253 66-159 (161)
205 1n0u_A EF-2, elongation factor 97.8 1.6E-05 5.6E-10 89.5 5.8 104 261-367 18-162 (842)
206 3t5g_A GTP-binding protein RHE 97.8 1.6E-05 5.4E-10 71.4 4.4 99 142-277 74-180 (181)
207 2h57_A ADP-ribosylation factor 97.7 3.8E-05 1.3E-09 69.7 6.6 93 140-254 85-185 (190)
208 1wb1_A Translation elongation 97.7 8E-05 2.7E-09 78.7 9.8 99 133-255 84-188 (482)
209 1kk1_A EIF2gamma; initiation o 97.7 2E-05 6.9E-10 81.4 4.7 58 261-318 9-94 (410)
210 3cph_A RAS-related protein SEC 97.7 3.3E-05 1.1E-09 71.2 5.7 90 139-255 86-181 (213)
211 1upt_A ARL1, ADP-ribosylation 97.7 3.5E-05 1.2E-09 68.1 5.5 94 140-255 69-168 (171)
212 1s0u_A EIF-2-gamma, translatio 97.7 2.8E-05 9.5E-10 80.4 5.5 41 261-301 7-49 (408)
213 1xzp_A Probable tRNA modificat 97.7 9.5E-05 3.3E-09 78.1 9.6 88 138-254 316-403 (482)
214 4dkx_A RAS-related protein RAB 97.7 4E-05 1.4E-09 72.2 6.0 75 261-338 12-90 (216)
215 1zj6_A ADP-ribosylation factor 97.7 5.7E-05 1.9E-09 68.3 6.6 96 140-257 78-179 (187)
216 2qu8_A Putative nucleolar GTP- 97.7 0.00014 4.8E-09 68.3 9.5 98 136-255 99-204 (228)
217 1g16_A RAS-related protein SEC 97.7 4.6E-05 1.6E-09 67.1 5.6 89 140-255 70-164 (170)
218 1zd9_A ADP-ribosylation factor 97.7 6.3E-05 2.1E-09 68.3 6.6 99 135-255 80-184 (188)
219 1r8s_A ADP-ribosylation factor 97.7 5E-05 1.7E-09 66.7 5.7 95 138-254 60-160 (164)
220 1kk1_A EIF2gamma; initiation o 97.7 0.00011 3.8E-09 75.8 9.2 101 133-256 94-200 (410)
221 1tq4_A IIGP1, interferon-induc 97.6 8.1E-05 2.8E-09 77.0 8.0 60 261-320 68-133 (413)
222 2wsm_A Hydrogenase expression/ 97.6 1.5E-05 5.1E-10 74.4 2.3 37 261-297 29-70 (221)
223 2qag_B Septin-6, protein NEDD5 97.6 5.4E-05 1.8E-09 78.5 6.4 58 263-320 43-108 (427)
224 1r5b_A Eukaryotic peptide chai 97.6 1.6E-05 5.6E-10 83.7 2.5 105 261-368 42-194 (467)
225 1ek0_A Protein (GTP-binding pr 97.6 2.6E-05 9E-10 68.6 3.4 94 138-254 68-167 (170)
226 4bas_A ADP-ribosylation factor 97.6 4.2E-05 1.4E-09 69.6 4.8 93 140-255 81-188 (199)
227 3sop_A Neuronal-specific septi 97.6 3.2E-05 1.1E-09 75.5 3.8 59 262-320 2-73 (270)
228 1jwy_B Dynamin A GTPase domain 97.6 9E-05 3.1E-09 73.1 7.1 103 130-258 152-264 (315)
229 1ksh_A ARF-like protein 2; sma 97.6 4.8E-05 1.6E-09 68.6 4.7 100 135-256 75-180 (186)
230 1jny_A EF-1-alpha, elongation 97.6 2.3E-05 7.8E-10 81.8 2.9 80 261-343 5-117 (435)
231 1moz_A ARL1, ADP-ribosylation 97.6 0.00017 5.9E-09 64.5 8.4 92 140-255 80-179 (183)
232 2dy1_A Elongation factor G; tr 97.6 9.3E-05 3.2E-09 81.3 7.8 120 261-383 8-154 (665)
233 3tkl_A RAS-related protein RAB 97.6 8.1E-05 2.8E-09 67.5 6.2 92 138-256 81-179 (196)
234 2f7s_A C25KG, RAS-related prot 97.6 0.00013 4.5E-09 67.5 7.6 56 133-190 95-155 (217)
235 2x77_A ADP-ribosylation factor 97.6 6.2E-05 2.1E-09 68.1 5.1 93 142-256 86-184 (189)
236 2il1_A RAB12; G-protein, GDP, 97.6 8.9E-05 3E-09 67.6 6.2 97 136-254 89-188 (192)
237 1lnz_A SPO0B-associated GTP-bi 97.6 6.7E-05 2.3E-09 75.8 5.9 97 135-256 226-330 (342)
238 3t1o_A Gliding protein MGLA; G 97.5 9.4E-05 3.2E-09 66.8 6.2 93 139-255 91-191 (198)
239 1c1y_A RAS-related protein RAP 97.5 0.00014 4.9E-09 63.7 6.9 92 140-253 69-164 (167)
240 1r2q_A RAS-related protein RAB 97.5 6.2E-05 2.1E-09 66.1 4.6 93 138-254 71-167 (170)
241 2ce2_X GTPase HRAS; signaling 97.5 8.5E-05 2.9E-09 64.8 5.4 90 140-254 69-163 (166)
242 1s0u_A EIF-2-gamma, translatio 97.5 0.00018 6.1E-09 74.2 8.6 100 133-255 92-197 (408)
243 1vg8_A RAS-related protein RAB 97.5 7.4E-05 2.5E-09 68.4 5.1 92 141-255 76-174 (207)
244 1mh1_A RAC1; GTP-binding, GTPa 97.5 6.8E-05 2.3E-09 67.1 4.8 94 141-256 72-180 (186)
245 2efe_B Small GTP-binding prote 97.5 0.00012 4.1E-09 65.3 6.3 93 139-255 78-174 (181)
246 2j37_W Signal recognition part 97.5 6.8E-05 2.3E-09 79.5 5.4 32 261-292 100-137 (504)
247 2b6h_A ADP-ribosylation factor 97.5 0.00013 4.6E-09 66.5 6.7 92 139-254 90-189 (192)
248 2h17_A ADP-ribosylation factor 97.5 0.00026 9E-09 63.6 8.5 91 140-252 83-179 (181)
249 2y8e_A RAB-protein 6, GH09086P 97.5 6E-05 2E-09 67.0 4.0 93 138-254 79-175 (179)
250 1z0j_A RAB-22, RAS-related pro 97.5 0.00012 4.3E-09 64.3 5.9 94 138-254 71-167 (170)
251 3vqt_A RF-3, peptide chain rel 97.5 0.00018 6.2E-09 77.2 8.1 119 262-383 31-181 (548)
252 2j1l_A RHO-related GTP-binding 97.5 0.00012 4.2E-09 68.0 6.0 55 139-193 99-155 (214)
253 3reg_A RHO-like small GTPase; 97.5 6.1E-05 2.1E-09 68.6 3.8 90 140-255 89-187 (194)
254 2gf0_A GTP-binding protein DI- 97.5 0.00013 4.5E-09 66.2 6.1 95 139-256 73-171 (199)
255 3bc1_A RAS-related protein RAB 97.5 9.3E-05 3.2E-09 66.6 4.9 94 135-255 83-184 (195)
256 3llu_A RAS-related GTP-binding 97.5 0.00039 1.3E-08 63.5 9.1 53 140-192 90-145 (196)
257 2gj8_A MNME, tRNA modification 97.4 0.00011 3.9E-09 65.8 5.3 90 137-255 75-165 (172)
258 2qnr_A Septin-2, protein NEDD5 97.4 7.8E-05 2.7E-09 73.9 4.5 58 262-319 18-88 (301)
259 2g6b_A RAS-related protein RAB 97.4 7.9E-05 2.7E-09 66.4 4.2 93 136-255 74-173 (180)
260 2qag_C Septin-7; cell cycle, c 97.4 6.1E-05 2.1E-09 78.1 3.5 58 262-320 31-101 (418)
261 2fh5_B SR-beta, signal recogni 97.4 0.0002 7E-09 66.1 6.7 65 139-203 72-142 (214)
262 3bwd_D RAC-like GTP-binding pr 97.4 0.0001 3.6E-09 65.8 4.4 52 141-192 75-128 (182)
263 1f6b_A SAR1; gtpases, N-termin 97.4 0.00015 5.2E-09 66.6 5.6 103 141-253 88-196 (198)
264 1fzq_A ADP-ribosylation factor 97.4 0.00014 4.8E-09 65.7 5.2 95 138-254 76-176 (181)
265 2fg5_A RAB-22B, RAS-related pr 97.4 0.00018 6.1E-09 65.4 6.0 92 139-256 89-186 (192)
266 4dsu_A GTPase KRAS, isoform 2B 97.4 0.00016 5.4E-09 64.9 5.5 94 139-255 69-165 (189)
267 3p26_A Elongation factor 1 alp 97.4 0.00031 1.1E-08 74.1 8.5 56 134-190 123-185 (483)
268 2gf9_A RAS-related protein RAB 97.4 0.00017 5.7E-09 65.3 5.6 89 140-255 89-184 (189)
269 2e87_A Hypothetical protein PH 97.4 0.0006 2.1E-08 68.9 10.0 89 142-255 243-335 (357)
270 3c5h_A Glucocorticoid receptor 97.4 0.00053 1.8E-08 65.9 9.2 86 145-253 162-252 (255)
271 3dz8_A RAS-related protein RAB 97.4 0.00027 9.4E-09 64.0 6.7 94 134-254 84-184 (191)
272 1z06_A RAS-related protein RAB 97.4 0.0002 7E-09 64.7 5.8 54 138-191 86-142 (189)
273 4gzl_A RAS-related C3 botulinu 97.3 8.3E-05 2.8E-09 68.6 3.2 54 140-193 96-151 (204)
274 1z0f_A RAB14, member RAS oncog 97.3 0.00025 8.4E-09 62.9 6.2 93 137-253 79-175 (179)
275 2gco_A H9, RHO-related GTP-bin 97.3 0.00024 8.2E-09 65.1 6.2 53 141-193 92-146 (201)
276 2erx_A GTP-binding protein DI- 97.3 0.00026 9E-09 62.2 6.2 94 139-255 68-166 (172)
277 4djt_A GTP-binding nuclear pro 97.3 0.00028 9.5E-09 65.3 6.6 91 142-255 81-174 (218)
278 1yrb_A ATP(GTP)binding protein 97.3 5.4E-05 1.9E-09 72.5 1.7 35 261-295 13-52 (262)
279 1z2a_A RAS-related protein RAB 97.3 0.00017 5.7E-09 63.3 4.8 89 140-253 72-164 (168)
280 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00022 7.5E-09 63.3 5.7 95 137-254 71-172 (177)
281 3c5h_A Glucocorticoid receptor 97.3 0.00018 6.1E-09 69.3 5.4 25 261-285 18-51 (255)
282 2hf9_A Probable hydrogenase ni 97.3 0.00018 6.2E-09 67.1 5.2 35 261-295 37-76 (226)
283 2lkc_A Translation initiation 97.3 0.00038 1.3E-08 61.8 7.1 90 142-255 75-170 (178)
284 2a5j_A RAS-related protein RAB 97.3 0.00022 7.6E-09 64.6 5.7 51 140-190 88-140 (191)
285 2hup_A RAS-related protein RAB 97.3 0.00032 1.1E-08 64.4 6.7 94 135-255 91-192 (201)
286 2j0v_A RAC-like GTP-binding pr 97.3 0.00013 4.5E-09 67.3 4.1 50 142-191 77-128 (212)
287 2p5s_A RAS and EF-hand domain 97.3 0.00017 5.7E-09 66.0 4.8 53 137-189 92-146 (199)
288 1m2o_B GTP-binding protein SAR 97.3 0.00017 5.7E-09 65.7 4.6 100 141-252 86-188 (190)
289 3tw8_B RAS-related protein RAB 97.3 0.00014 4.7E-09 64.7 3.8 88 141-255 77-170 (181)
290 1zun_B Sulfate adenylate trans 97.3 0.00051 1.7E-08 71.4 8.5 55 135-190 117-171 (434)
291 2fv8_A H6, RHO-related GTP-bin 97.3 0.00018 6.1E-09 66.3 4.5 105 141-255 92-199 (207)
292 2fn4_A P23, RAS-related protei 97.3 0.00045 1.6E-08 61.2 7.1 92 141-255 76-171 (181)
293 3avx_A Elongation factor TS, e 97.3 0.00013 4.4E-09 83.7 4.2 108 260-370 294-427 (1289)
294 2hxs_A RAB-26, RAS-related pro 97.3 0.0002 6.7E-09 63.7 4.6 90 140-256 74-173 (178)
295 1zbd_A Rabphilin-3A; G protein 97.3 0.00022 7.6E-09 65.2 5.0 92 136-254 71-169 (203)
296 2q3h_A RAS homolog gene family 97.2 0.00015 5E-09 66.2 3.6 50 142-191 88-139 (201)
297 3kkq_A RAS-related protein M-R 97.2 0.00042 1.4E-08 62.0 6.5 88 140-254 84-180 (183)
298 2yc2_C IFT27, small RAB-relate 97.2 0.00016 5.4E-09 66.1 3.7 56 135-190 86-146 (208)
299 3j2k_7 ERF3, eukaryotic polype 97.2 0.0017 5.7E-08 67.7 11.9 56 133-190 106-169 (439)
300 3con_A GTPase NRAS; structural 97.2 0.00017 5.9E-09 65.1 3.9 92 137-255 84-182 (190)
301 3q72_A GTP-binding protein RAD 97.2 0.00037 1.3E-08 61.1 5.9 90 140-254 67-162 (166)
302 3o47_A ADP-ribosylation factor 97.2 0.00017 5.9E-09 72.2 4.2 96 138-255 225-326 (329)
303 2oil_A CATX-8, RAS-related pro 97.2 0.00027 9.4E-09 64.0 5.2 92 139-254 91-186 (193)
304 3clv_A RAB5 protein, putative; 97.2 0.0004 1.4E-08 62.7 6.1 89 139-254 110-202 (208)
305 3gee_A MNME, tRNA modification 97.2 0.00083 2.9E-08 70.7 9.3 89 139-255 306-397 (476)
306 2atx_A Small GTP binding prote 97.2 0.00017 6E-09 65.4 3.6 52 141-192 85-138 (194)
307 2qtf_A Protein HFLX, GTP-bindi 97.2 0.00079 2.7E-08 68.5 8.8 99 137-257 249-355 (364)
308 1ky3_A GTP-binding protein YPT 97.2 0.00042 1.4E-08 61.5 6.0 94 138-254 74-176 (182)
309 2bcg_Y Protein YP2, GTP-bindin 97.2 0.00033 1.1E-08 64.2 5.5 90 141-255 76-170 (206)
310 2bme_A RAB4A, RAS-related prot 97.2 0.00029 1E-08 63.1 5.0 97 135-255 72-172 (186)
311 2a9k_A RAS-related protein RAL 97.2 0.0004 1.4E-08 61.9 5.8 94 138-255 82-180 (187)
312 2fu5_C RAS-related protein RAB 97.2 0.00029 1E-08 63.0 4.7 87 140-255 75-170 (183)
313 2iwr_A Centaurin gamma 1; ANK 97.2 0.00072 2.5E-08 60.1 7.2 85 142-254 69-167 (178)
314 2c78_A Elongation factor TU-A; 97.2 0.00063 2.1E-08 70.0 7.6 54 135-190 88-142 (405)
315 3q85_A GTP-binding protein REM 97.2 0.00054 1.9E-08 60.2 6.2 90 142-254 72-165 (169)
316 3q3j_B RHO-related GTP-binding 97.2 0.00016 5.5E-09 67.3 2.9 50 141-190 94-145 (214)
317 1u8z_A RAS-related protein RAL 97.1 0.00033 1.1E-08 61.2 4.6 93 138-254 68-165 (168)
318 3th5_A RAS-related C3 botulinu 96.2 6.8E-05 2.3E-09 68.9 0.0 54 139-192 95-150 (204)
319 3i8s_A Ferrous iron transport 97.1 5.5E-05 1.9E-09 73.8 -0.7 83 142-255 82-168 (274)
320 1kao_A RAP2A; GTP-binding prot 97.1 0.00028 9.5E-09 61.6 3.9 53 139-191 68-123 (167)
321 3iby_A Ferrous iron transport 97.1 7E-05 2.4E-09 72.4 -0.1 81 144-253 82-164 (256)
322 2ywe_A GTP-binding protein LEP 97.1 0.00099 3.4E-08 72.1 8.8 99 135-256 86-184 (600)
323 3gj0_A GTP-binding nuclear pro 97.1 0.00033 1.1E-08 65.2 4.0 89 142-254 84-173 (221)
324 3geh_A MNME, tRNA modification 97.1 0.00022 7.7E-09 74.8 3.1 88 138-255 296-383 (462)
325 3zvr_A Dynamin-1; hydrolase, D 97.0 0.00047 1.6E-08 76.4 5.5 57 135-193 176-234 (772)
326 3ihw_A Centg3; RAS, centaurin, 97.0 0.00049 1.7E-08 62.3 4.8 87 142-254 82-178 (184)
327 3tr5_A RF-3, peptide chain rel 97.0 0.00084 2.9E-08 71.6 7.3 65 135-201 95-162 (528)
328 2atv_A RERG, RAS-like estrogen 97.0 0.00073 2.5E-08 61.4 5.7 89 139-254 92-189 (196)
329 2ew1_A RAS-related protein RAB 97.0 0.00037 1.3E-08 64.4 3.4 94 135-255 88-188 (201)
330 2elf_A Protein translation elo 97.0 0.0023 8E-08 65.1 9.6 95 135-255 73-179 (370)
331 1z08_A RAS-related protein RAB 97.0 0.00044 1.5E-08 60.7 3.7 86 140-254 73-167 (170)
332 2o52_A RAS-related protein RAB 97.0 0.00098 3.3E-08 61.0 6.2 92 139-254 91-186 (200)
333 3a1s_A Iron(II) transport prot 97.0 0.00032 1.1E-08 67.7 3.0 83 144-255 82-166 (258)
334 3t5d_A Septin-7; GTP-binding p 96.9 0.0011 3.8E-08 64.3 6.8 54 146-202 116-170 (274)
335 1m7b_A RND3/RHOE small GTP-bin 96.9 0.00074 2.5E-08 60.7 5.2 49 142-190 75-125 (184)
336 3cpj_B GTP-binding protein YPT 96.9 0.00043 1.5E-08 64.6 3.7 89 141-255 81-175 (223)
337 2nzj_A GTP-binding protein REM 96.9 0.00072 2.5E-08 59.7 4.7 88 141-255 73-168 (175)
338 3qq5_A Small GTP-binding prote 96.9 0.00042 1.4E-08 71.9 3.5 92 136-255 104-195 (423)
339 3lvq_E ARF-GAP with SH3 domain 96.9 0.00063 2.2E-08 71.7 4.9 95 139-255 383-483 (497)
340 4fn5_A EF-G 1, elongation fact 96.9 0.0016 5.3E-08 72.1 8.1 121 260-383 11-166 (709)
341 3izy_P Translation initiation 96.9 0.0002 6.8E-09 76.5 0.8 115 141-279 71-211 (537)
342 3j25_A Tetracycline resistance 96.9 0.00045 1.5E-08 75.5 3.6 116 263-381 3-146 (638)
343 1pui_A ENGB, probable GTP-bind 96.9 0.0059 2E-07 55.8 10.8 90 144-257 107-200 (210)
344 2v3c_C SRP54, signal recogniti 96.9 0.00043 1.5E-08 72.0 3.3 23 262-284 99-121 (432)
345 1gwn_A RHO-related GTP-binding 96.9 0.00032 1.1E-08 64.9 2.1 49 142-190 96-146 (205)
346 2bov_A RAla, RAS-related prote 96.9 0.00099 3.4E-08 60.6 5.3 94 138-255 78-176 (206)
347 2xtp_A GTPase IMAP family memb 96.8 0.00062 2.1E-08 65.2 3.9 100 135-256 95-208 (260)
348 1d2e_A Elongation factor TU (E 96.8 0.0024 8.2E-08 65.5 8.5 56 133-190 77-133 (397)
349 3cbq_A GTP-binding protein REM 96.8 0.0024 8.3E-08 58.3 7.4 90 142-255 93-187 (195)
350 2wji_A Ferrous iron transport 96.8 0.00034 1.1E-08 62.0 1.5 80 144-254 80-163 (165)
351 3k53_A Ferrous iron transport 96.8 0.0003 1E-08 68.2 1.2 85 143-255 79-165 (271)
352 2wkq_A NPH1-1, RAS-related C3 96.8 0.0005 1.7E-08 67.8 2.6 52 140-191 221-274 (332)
353 3p32_A Probable GTPase RV1496/ 96.8 0.002 6.7E-08 65.1 7.0 97 140-255 187-283 (355)
354 3oes_A GTPase rhebl1; small GT 96.7 0.00083 2.9E-08 61.4 3.9 86 141-255 91-186 (201)
355 1yrb_A ATP(GTP)binding protein 96.7 0.0027 9.2E-08 60.5 7.6 54 136-194 129-189 (262)
356 2qpt_A EH domain-containing pr 96.7 0.0013 4.4E-08 70.6 5.8 66 135-202 178-244 (550)
357 1nrj_B SR-beta, signal recogni 96.7 0.0021 7E-08 59.4 6.5 64 139-202 76-146 (218)
358 1g7s_A Translation initiation 96.7 0.0039 1.3E-07 67.4 9.5 47 142-190 90-136 (594)
359 2ged_A SR-beta, signal recogni 96.7 0.0014 4.6E-08 59.2 4.6 68 137-204 110-184 (193)
360 3izq_1 HBS1P, elongation facto 96.6 0.0013 4.4E-08 71.5 4.8 56 134-190 257-319 (611)
361 3ney_A 55 kDa erythrocyte memb 96.6 0.00046 1.6E-08 64.1 0.8 44 261-304 18-62 (197)
362 1dar_A EF-G, elongation factor 96.6 0.0067 2.3E-07 66.8 10.2 67 135-204 90-156 (691)
363 3b1v_A Ferrous iron uptake tra 96.6 0.00064 2.2E-08 66.3 1.7 80 144-254 79-162 (272)
364 2aka_B Dynamin-1; fusion prote 96.5 0.0013 4.6E-08 63.9 4.0 57 134-192 150-208 (299)
365 3mca_A HBS1, elongation factor 96.5 0.0016 5.3E-08 70.5 4.8 49 140-190 273-329 (592)
366 3r7w_B Gtpase2, GTP-binding pr 96.5 0.0038 1.3E-07 62.4 7.2 107 264-370 1-121 (331)
367 2zej_A Dardarin, leucine-rich 96.5 0.0034 1.2E-07 56.4 6.2 53 141-194 75-130 (184)
368 2cxx_A Probable GTP-binding pr 96.5 0.0095 3.2E-07 53.1 9.2 88 143-255 80-183 (190)
369 3c5c_A RAS-like protein 12; GD 96.5 0.0036 1.2E-07 56.5 6.3 88 140-254 86-184 (187)
370 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0031 1.1E-07 65.6 6.6 61 262-322 67-155 (457)
371 3r7w_A Gtpase1, GTP-binding pr 96.5 0.0058 2E-07 60.3 8.3 53 139-191 74-130 (307)
372 1udx_A The GTP-binding protein 96.5 0.0036 1.2E-07 64.7 7.0 93 140-257 230-326 (416)
373 1jny_A EF-1-alpha, elongation 96.5 0.0049 1.7E-07 64.0 8.0 56 135-190 97-158 (435)
374 3avx_A Elongation factor TS, e 96.5 0.0079 2.7E-07 69.2 10.1 56 133-190 370-426 (1289)
375 2wjg_A FEOB, ferrous iron tran 96.5 0.0011 3.8E-08 59.5 2.5 82 144-256 84-169 (188)
376 1r5b_A Eukaryotic peptide chai 96.4 0.0078 2.7E-07 63.1 8.8 56 133-190 132-195 (467)
377 3l0i_B RAS-related protein RAB 96.3 0.00021 7.1E-09 65.4 -3.1 85 142-255 102-195 (199)
378 2xex_A Elongation factor G; GT 96.3 0.0066 2.3E-07 66.9 8.1 55 135-191 88-142 (693)
379 3dpu_A RAB family protein; roc 96.3 0.0025 8.5E-08 68.0 4.6 88 142-256 118-208 (535)
380 2p67_A LAO/AO transport system 96.2 0.0087 3E-07 60.0 7.7 85 142-254 166-259 (341)
381 2wsm_A Hydrogenase expression/ 96.2 0.0045 1.6E-07 57.2 5.2 81 146-254 130-212 (221)
382 2j69_A Bacterial dynamin-like 96.2 0.0062 2.1E-07 67.1 7.0 54 137-192 192-246 (695)
383 4dkx_A RAS-related protein RAB 96.1 0.017 5.8E-07 54.0 8.5 87 141-254 81-174 (216)
384 2dy1_A Elongation factor G; tr 96.0 0.019 6.6E-07 62.8 10.1 53 135-189 87-139 (665)
385 1wxq_A GTP-binding protein; st 96.0 0.0062 2.1E-07 62.6 5.7 38 176-213 214-252 (397)
386 2www_A Methylmalonic aciduria 96.0 0.013 4.3E-07 59.1 7.6 92 141-255 183-278 (349)
387 3lxw_A GTPase IMAP family memb 96.0 0.012 4.1E-07 56.1 7.1 56 135-191 91-154 (247)
388 2rdo_7 EF-G, elongation factor 95.9 0.026 9E-07 62.2 10.3 55 135-191 95-149 (704)
389 1f60_A Elongation factor EEF1A 95.8 0.0055 1.9E-07 64.1 4.0 56 134-190 97-159 (458)
390 3szr_A Interferon-induced GTP- 95.7 0.019 6.4E-07 62.3 7.8 24 263-286 46-69 (608)
391 3dm5_A SRP54, signal recogniti 95.6 0.0076 2.6E-07 62.7 4.5 23 261-283 99-121 (443)
392 2x2e_A Dynamin-1; nitration, h 95.5 0.0079 2.7E-07 60.5 3.7 57 134-192 155-213 (353)
393 2g3y_A GTP-binding protein GEM 95.4 0.012 4.2E-07 54.7 4.6 85 143-254 109-201 (211)
394 1kgd_A CASK, peripheral plasma 95.3 0.0066 2.2E-07 54.8 2.5 40 263-302 6-46 (180)
395 3lxx_A GTPase IMAP family memb 95.3 0.017 5.9E-07 54.3 5.4 61 134-195 101-164 (239)
396 2h5e_A Peptide chain release f 95.1 0.014 4.8E-07 62.1 4.6 56 135-192 95-150 (529)
397 2cjw_A GTP-binding protein GEM 95.1 0.026 9E-07 51.1 5.7 88 144-254 79-170 (192)
398 1h65_A Chloroplast outer envel 95.1 0.031 1.1E-06 53.7 6.6 60 133-192 105-170 (270)
399 3c8u_A Fructokinase; YP_612366 95.0 0.022 7.5E-07 52.5 5.0 27 260-286 20-46 (208)
400 1j8m_F SRP54, signal recogniti 94.9 0.011 3.7E-07 58.3 2.6 22 262-283 98-119 (297)
401 2hf9_A Probable hydrogenase ni 94.8 0.036 1.2E-06 51.2 6.1 57 176-254 164-222 (226)
402 2qor_A Guanylate kinase; phosp 94.7 0.0069 2.3E-07 55.7 0.6 41 261-301 11-52 (204)
403 1ko7_A HPR kinase/phosphatase; 94.7 0.083 2.8E-06 52.3 8.5 24 262-285 144-167 (314)
404 3kl4_A SRP54, signal recogniti 94.7 0.021 7.1E-07 59.3 4.3 22 262-283 97-118 (433)
405 3t34_A Dynamin-related protein 94.6 0.044 1.5E-06 55.0 6.5 61 131-192 158-219 (360)
406 3ec2_A DNA replication protein 94.6 0.023 7.9E-07 50.8 4.0 43 243-285 19-61 (180)
407 1ye8_A Protein THEP1, hypothet 94.6 0.015 5.2E-07 52.7 2.7 24 263-286 1-24 (178)
408 2qag_A Septin-2, protein NEDD5 94.6 0.039 1.3E-06 55.7 6.0 52 147-201 147-199 (361)
409 1zp6_A Hypothetical protein AT 94.5 0.019 6.7E-07 51.6 3.3 25 261-285 8-32 (191)
410 1rz3_A Hypothetical protein rb 94.4 0.037 1.3E-06 50.7 5.0 27 259-285 19-45 (201)
411 3tau_A Guanylate kinase, GMP k 94.2 0.025 8.6E-07 52.2 3.4 38 262-299 8-46 (208)
412 3vqt_A RF-3, peptide chain rel 94.2 0.099 3.4E-06 55.8 8.5 55 135-191 113-167 (548)
413 2f9l_A RAB11B, member RAS onco 94.2 0.066 2.3E-06 48.4 6.1 87 142-255 74-167 (199)
414 1lvg_A Guanylate kinase, GMP k 93.9 0.022 7.5E-07 52.3 2.2 24 263-286 5-28 (198)
415 2qm8_A GTPase/ATPase; G protei 93.8 0.11 3.9E-06 51.7 7.6 85 141-255 164-260 (337)
416 2xxa_A Signal recognition part 93.8 0.026 8.9E-07 58.6 2.8 31 261-291 99-136 (433)
417 2j41_A Guanylate kinase; GMP, 93.6 0.034 1.2E-06 50.5 3.0 26 261-286 5-30 (207)
418 3tr0_A Guanylate kinase, GMP k 93.5 0.036 1.2E-06 50.4 2.9 24 262-285 7-30 (205)
419 3tqc_A Pantothenate kinase; bi 93.4 0.058 2E-06 53.7 4.5 35 251-285 81-115 (321)
420 1znw_A Guanylate kinase, GMP k 93.3 0.039 1.3E-06 50.7 2.9 26 261-286 19-44 (207)
421 1zo1_I IF2, translation initia 93.3 0.078 2.7E-06 56.0 5.5 48 141-190 70-117 (501)
422 1kag_A SKI, shikimate kinase I 93.3 0.035 1.2E-06 49.0 2.4 24 262-285 4-27 (173)
423 3def_A T7I23.11 protein; chlor 93.3 0.11 3.7E-06 49.7 6.1 62 130-191 99-166 (262)
424 1s96_A Guanylate kinase, GMP k 93.1 0.044 1.5E-06 51.3 2.9 39 261-299 15-55 (219)
425 3asz_A Uridine kinase; cytidin 93.0 0.046 1.6E-06 50.0 2.9 25 261-285 5-29 (211)
426 1n0u_A EF-2, elongation factor 93.0 0.049 1.7E-06 61.2 3.7 53 135-189 111-163 (842)
427 1odf_A YGR205W, hypothetical 3 92.9 0.091 3.1E-06 51.4 5.0 42 244-286 14-55 (290)
428 3lw7_A Adenylate kinase relate 92.9 0.05 1.7E-06 47.5 2.8 20 263-282 2-21 (179)
429 1np6_A Molybdopterin-guanine d 92.9 0.044 1.5E-06 49.5 2.4 23 263-285 7-29 (174)
430 1ly1_A Polynucleotide kinase; 92.8 0.057 2E-06 47.7 3.2 22 263-284 3-24 (181)
431 1z6g_A Guanylate kinase; struc 92.8 0.044 1.5E-06 51.0 2.5 25 262-286 23-47 (218)
432 4eun_A Thermoresistant glucoki 92.8 0.052 1.8E-06 49.5 2.9 24 262-285 29-52 (200)
433 2rhm_A Putative kinase; P-loop 92.8 0.061 2.1E-06 48.2 3.3 25 261-285 4-28 (193)
434 2bdt_A BH3686; alpha-beta prot 92.7 0.048 1.6E-06 49.0 2.5 21 264-284 4-24 (189)
435 1knq_A Gluconate kinase; ALFA/ 92.7 0.064 2.2E-06 47.5 3.2 24 262-285 8-31 (175)
436 3a00_A Guanylate kinase, GMP k 92.7 0.048 1.6E-06 49.2 2.4 23 264-286 3-25 (186)
437 1ex7_A Guanylate kinase; subst 92.6 0.053 1.8E-06 49.6 2.6 38 265-302 4-42 (186)
438 1sq5_A Pantothenate kinase; P- 92.6 0.086 3E-06 51.8 4.3 26 260-285 78-103 (308)
439 2if2_A Dephospho-COA kinase; a 92.5 0.054 1.9E-06 49.3 2.6 22 263-284 2-23 (204)
440 1oix_A RAS-related protein RAB 92.4 0.16 5.6E-06 45.6 5.7 88 142-252 98-188 (191)
441 2v9p_A Replication protein E1; 92.4 0.061 2.1E-06 53.1 2.9 27 260-286 124-150 (305)
442 2bbw_A Adenylate kinase 4, AK4 92.3 0.068 2.3E-06 50.4 3.1 22 262-283 27-48 (246)
443 1cip_A Protein (guanine nucleo 92.3 0.16 5.6E-06 51.0 6.1 48 142-189 213-273 (353)
444 3lnc_A Guanylate kinase, GMP k 92.3 0.058 2E-06 50.3 2.5 26 261-286 26-52 (231)
445 2qt1_A Nicotinamide riboside k 92.3 0.077 2.6E-06 48.5 3.3 25 261-285 20-44 (207)
446 3cm0_A Adenylate kinase; ATP-b 92.2 0.071 2.4E-06 47.5 3.0 23 262-284 4-26 (186)
447 2jaq_A Deoxyguanosine kinase; 92.2 0.065 2.2E-06 48.4 2.7 22 264-285 2-23 (205)
448 1cke_A CK, MSSA, protein (cyti 92.2 0.067 2.3E-06 49.4 2.8 24 262-285 5-28 (227)
449 3kb2_A SPBC2 prophage-derived 92.1 0.07 2.4E-06 46.7 2.8 22 264-285 3-24 (173)
450 1jjv_A Dephospho-COA kinase; P 92.1 0.075 2.6E-06 48.4 3.1 22 263-284 3-24 (206)
451 2eyu_A Twitching motility prot 92.1 0.1 3.5E-06 50.1 4.1 26 260-285 23-48 (261)
452 4gp7_A Metallophosphoesterase; 92.1 0.081 2.8E-06 47.1 3.1 23 261-283 8-30 (171)
453 4a9a_A Ribosome-interacting GT 92.0 0.11 3.7E-06 52.8 4.3 56 133-189 137-195 (376)
454 2pcj_A ABC transporter, lipopr 91.9 0.078 2.7E-06 49.7 2.9 26 261-286 29-54 (224)
455 3uie_A Adenylyl-sulfate kinase 91.9 0.086 2.9E-06 48.0 3.1 25 261-285 24-48 (200)
456 1qhx_A CPT, protein (chloramph 91.8 0.088 3E-06 46.6 3.0 23 263-285 4-26 (178)
457 2wwf_A Thymidilate kinase, put 91.8 0.088 3E-06 47.9 3.1 25 261-285 9-33 (212)
458 2f1r_A Molybdopterin-guanine d 91.7 0.043 1.5E-06 49.4 0.9 23 264-286 4-26 (171)
459 3tif_A Uncharacterized ABC tra 91.7 0.091 3.1E-06 49.6 3.2 26 261-286 30-55 (235)
460 1kht_A Adenylate kinase; phosp 91.7 0.087 3E-06 47.0 2.9 23 262-284 3-25 (192)
461 1nn5_A Similar to deoxythymidy 91.7 0.089 3E-06 48.0 3.1 25 261-285 8-32 (215)
462 2cbz_A Multidrug resistance-as 91.7 0.091 3.1E-06 49.7 3.2 26 261-286 30-55 (237)
463 3aez_A Pantothenate kinase; tr 91.7 0.087 3E-06 52.1 3.1 28 259-286 87-114 (312)
464 3t61_A Gluconokinase; PSI-biol 91.6 0.075 2.5E-06 48.4 2.4 24 262-285 18-41 (202)
465 2i3b_A HCR-ntpase, human cance 91.6 0.07 2.4E-06 48.8 2.2 23 264-286 3-25 (189)
466 2yvu_A Probable adenylyl-sulfa 91.6 0.096 3.3E-06 46.9 3.1 25 261-285 12-36 (186)
467 2onk_A Molybdate/tungstate ABC 91.6 0.087 3E-06 50.0 2.9 24 263-286 25-48 (240)
468 2v54_A DTMP kinase, thymidylat 91.5 0.093 3.2E-06 47.5 3.0 24 262-285 4-27 (204)
469 1nks_A Adenylate kinase; therm 91.5 0.092 3.1E-06 46.8 2.9 22 264-285 3-24 (194)
470 2plr_A DTMP kinase, probable t 91.5 0.1 3.4E-06 47.4 3.2 24 262-285 4-27 (213)
471 1jbk_A CLPB protein; beta barr 91.5 0.16 5.6E-06 44.5 4.5 43 241-286 25-67 (195)
472 1mv5_A LMRA, multidrug resista 91.5 0.1 3.6E-06 49.4 3.3 26 261-286 27-52 (243)
473 4a74_A DNA repair and recombin 91.4 0.094 3.2E-06 48.2 2.9 39 242-285 10-48 (231)
474 1aky_A Adenylate kinase; ATP:A 91.4 0.1 3.4E-06 48.2 3.0 25 261-285 3-27 (220)
475 3vaa_A Shikimate kinase, SK; s 91.4 0.096 3.3E-06 47.7 2.9 24 262-285 25-48 (199)
476 3b85_A Phosphate starvation-in 91.3 0.088 3E-06 48.9 2.6 23 263-285 23-45 (208)
477 1b0u_A Histidine permease; ABC 91.3 0.1 3.5E-06 50.2 3.2 26 261-286 31-56 (262)
478 1g6h_A High-affinity branched- 91.3 0.1 3.4E-06 50.0 3.1 26 261-286 32-57 (257)
479 1sgw_A Putative ABC transporte 91.3 0.092 3.1E-06 49.0 2.7 26 261-286 34-59 (214)
480 1y63_A LMAJ004144AAA protein; 91.3 0.12 3.9E-06 46.5 3.3 25 261-285 9-33 (184)
481 2ff7_A Alpha-hemolysin translo 91.2 0.11 3.6E-06 49.6 3.1 26 261-286 34-59 (247)
482 1tev_A UMP-CMP kinase; ploop, 91.1 0.11 3.9E-06 46.3 3.1 24 262-285 3-26 (196)
483 2pez_A Bifunctional 3'-phospho 91.1 0.11 3.9E-06 46.1 3.0 25 261-285 4-28 (179)
484 2olj_A Amino acid ABC transpor 91.0 0.12 4E-06 49.9 3.2 26 261-286 49-74 (263)
485 2ghi_A Transport protein; mult 91.0 0.12 4.1E-06 49.7 3.2 26 261-286 45-70 (260)
486 3b9q_A Chloroplast SRP recepto 91.0 0.18 6.3E-06 49.5 4.6 25 261-285 99-123 (302)
487 2cdn_A Adenylate kinase; phosp 90.9 0.12 4.2E-06 46.8 3.1 25 261-285 19-43 (201)
488 2jeo_A Uridine-cytidine kinase 90.9 0.12 4.1E-06 48.8 3.1 25 261-285 24-48 (245)
489 2pt5_A Shikimate kinase, SK; a 90.9 0.12 4E-06 45.3 2.8 23 263-285 1-23 (168)
490 3r7w_B Gtpase2, GTP-binding pr 90.9 0.17 5.8E-06 50.4 4.3 51 142-192 69-122 (331)
491 2c95_A Adenylate kinase 1; tra 90.9 0.12 4.1E-06 46.3 3.0 25 261-285 8-32 (196)
492 4g1u_C Hemin import ATP-bindin 90.9 0.12 4E-06 49.9 3.0 26 261-286 36-61 (266)
493 2pze_A Cystic fibrosis transme 90.9 0.12 4.1E-06 48.6 3.0 26 261-286 33-58 (229)
494 3fb4_A Adenylate kinase; psych 90.9 0.11 3.8E-06 47.6 2.8 23 263-285 1-23 (216)
495 3gfo_A Cobalt import ATP-bindi 90.8 0.12 4E-06 50.2 3.0 26 261-286 33-58 (275)
496 2qi9_C Vitamin B12 import ATP- 90.8 0.12 4.2E-06 49.3 3.0 26 261-286 25-50 (249)
497 2d2e_A SUFC protein; ABC-ATPas 90.8 0.12 4.2E-06 49.2 3.1 25 261-285 28-52 (250)
498 2vp4_A Deoxynucleoside kinase; 90.7 0.13 4.5E-06 48.0 3.3 26 260-285 18-43 (230)
499 1ji0_A ABC transporter; ATP bi 90.7 0.12 4.3E-06 48.8 3.1 26 261-286 31-56 (240)
500 2ixe_A Antigen peptide transpo 90.7 0.13 4.4E-06 49.7 3.2 26 261-286 44-69 (271)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=1.2e-43 Score=352.74 Aligned_cols=253 Identities=23% Similarity=0.411 Sum_probs=197.1
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEc
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKC 212 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~ 212 (484)
.+++++++.++++|+||+|+|||+|.+++++.+++++ +++|.|+|+||+||++.+.++.|.+|+++. ++++.++
T Consensus 12 ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iS- 86 (282)
T 1puj_A 12 KARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSIN- 86 (282)
T ss_dssp HHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECC-
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEE-
Confidence 3678999999999999999999999999999999887 479999999999999988899999999753 5555543
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc--------ccccceEEEEecCCCCchhHHHHHhhc
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--------EIKKSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~--------~~~~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+..+.|.+.|++.+.+++... .....++|++||+||||||||||+|.+
T Consensus 87 ------------------------A~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~ 142 (282)
T 1puj_A 87 ------------------------SVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAK 142 (282)
T ss_dssp ------------------------TTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHT
T ss_pred ------------------------CCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhc
Confidence 234556667777666554321 124578999999999999999999999
Q ss_pred CccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChH--HHHHHhccccccccCCCch---hHHHHHhhCCcchh
Q 011507 285 CHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND--ASIALRNCKRIEKLDDPVG---PVKEILNRCPANLL 359 (484)
Q Consensus 285 ~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~--~~~~L~~~~~i~~l~d~~~---~v~~il~~~~~~~l 359 (484)
.+.+.|++.||+|++.+++.++..+.|+||||+..+...+.. ..+++.++..... .++.. .+.+++.++.+..+
T Consensus 143 ~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~l~~~~~~~l 221 (282)
T 1puj_A 143 KNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSI-INLQDVAVFGLRFLEEHYPERL 221 (282)
T ss_dssp SCCC------------CCEEETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTS-SCHHHHHHHHHHHHHHHCHHHH
T ss_pred CceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhh-CCHHHHHHHHHHHHHHhChHHH
Confidence 999999999999999999988999999999999998665544 3456666653322 23332 34556677777888
Q ss_pred hhhcCCCCC-CCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCC
Q 011507 360 ISLYKLPSF-DSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 416 (484)
Q Consensus 360 ~~~~ki~~~-~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp 416 (484)
...|+++.+ .+..+||..+|+++|++.+||.||+++||+.+|+||++|++++|+++.
T Consensus 222 ~~~y~~~~~~~~~~~~l~~~a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l~~ 279 (282)
T 1puj_A 222 KERYGLDEIPEDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQ 279 (282)
T ss_dssp HHHTTCSSCCSSHHHHHHHHHHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCSCC
T ss_pred HHHcCCCCCCCCHHHHHHHHHHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceECCC
Confidence 889999866 578899999999999999999999999999999999999999999874
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=3.2e-40 Score=324.74 Aligned_cols=237 Identities=25% Similarity=0.404 Sum_probs=184.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc-CCeEEEEcc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE-LPAVAFKCS 213 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~p~v~f~~~ 213 (484)
.+++++..++++|+||+|+|||+|++++++.++ ++ ++|.|+|+||+||++.+.++.|++|+++. +|+ .++
T Consensus 11 a~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iS-- 81 (262)
T 3cnl_A 11 AKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITT-- 81 (262)
T ss_dssp TTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EEC--
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEE--
Confidence 457899999999999999999999999998887 54 69999999999999998899999999765 554 442
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCC
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGAT 293 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~ 293 (484)
+..+.|.+.|++.|.+.+ ++|++||.||||||||||+|.+...+.++++
T Consensus 82 -----------------------a~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 82 -----------------------HKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp -----------------------CTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred -----------------------CCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 345567788887776533 6899999999999999999999998899999
Q ss_pred CCeeeeeEEEEeCCcEEEEecCCCccCCC-CChHHHHHHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHH
Q 011507 294 PGLTRSMQEVQLDKNVKLLDCPGVVMLKS-GENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVD 372 (484)
Q Consensus 294 pg~Tr~~~~~~l~~~i~liDTPGi~~~~~-~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~ 372 (484)
||+|+..+.+.++..+.|+||||+..+.. .+.... . +.+....+....+.+.+.++....+...|+++ +.+ .
T Consensus 131 ~g~T~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~--~---~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i~-~~d-~ 203 (262)
T 3cnl_A 131 PGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAA--K---LLLVGSLPVERIEDQRIFERAFEIFARSIGIE-SSF-S 203 (262)
T ss_dssp ----CCSCEEECTTSCEEESSCEECCCCCCSHHHHH--H---HHHTTSSCGGGCCCHHHHHHHHHHHHHHHTCC-CCH-H
T ss_pred CCCccceEEEEeCCCEEEEECCCcccCcCCCChhhc--c---cccCCHHHHHHHHHHHHHHhCHHHHHHHcCcC-CCc-H
Confidence 99999999998888999999999998865 333222 1 11112223333344555555566788889997 344 7
Q ss_pred HHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCC
Q 011507 373 DFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPAR 418 (484)
Q Consensus 373 e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~~ 418 (484)
+||..+|+++|++.+||.||+.+||+.+|+||+.|++++|++|+..
T Consensus 204 ~~l~~ia~~~g~~~kgg~~d~~~aa~~~l~d~~~g~l~~~~l~~~~ 249 (262)
T 3cnl_A 204 EFFEDFARKRGLLKKGGVPDIERALMLFFTEVAQGKAGRVSFERPE 249 (262)
T ss_dssp HHHHHHHHHTTCBCGGGCBCHHHHHHHHHHHHHTTTTCSCCSCCTT
T ss_pred HHHHHHHHHhCCccCCCcccHHHHHHHHHHHHHcCCCCceECCCCc
Confidence 9999999999999999999999999999999999999999988653
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.90 E-value=7.7e-24 Score=217.84 Aligned_cols=158 Identities=27% Similarity=0.477 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCe
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPA 207 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~----e~~~~wl~~l~~~~p~ 207 (484)
...|.+.+..+.+.+|+||+|+|++||.++..+.+.+++ +++|+|+|+||+||+|. +.+..|+..+.+....
T Consensus 58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~ 133 (369)
T 3ec1_A 58 DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGL 133 (369)
T ss_dssp -CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCC
Confidence 345777777788999999999999999999999988875 47999999999999986 3567787754333221
Q ss_pred --EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcC
Q 011507 208 --VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 208 --v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..+ ..+|+.++.|.+.|++.+.++.. ..+|+++|.||||||||||+|.+.
T Consensus 134 ~~~~v----------------------~~iSA~~g~gi~~L~~~I~~~~~------~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 134 CPVDV----------------------CLVSAAKGIGMAKVMEAINRYRE------GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp CCSEE----------------------EECBTTTTBTHHHHHHHHHHHHT------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred CcccE----------------------EEEECCCCCCHHHHHHHHHhhcc------cCcEEEEcCCCCchHHHHHHHHhh
Confidence 011 14566788999999999988753 357999999999999999999987
Q ss_pred -----ccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 286 -----HVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 286 -----~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
..+.+++.||||+..+.+.++.++.|+||||+..+.
T Consensus 186 ~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 226 (369)
T 3ec1_A 186 ATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHH 226 (369)
T ss_dssp HHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCS
T ss_pred ccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHH
Confidence 567899999999999999998899999999998764
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.90 E-value=1.2e-23 Score=216.42 Aligned_cols=158 Identities=26% Similarity=0.483 Sum_probs=125.1
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCC
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELP 206 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p 206 (484)
....|.+.+..+...+|+||+|+|++||.++..+.+.+++ +++|+|+|+||+||++.+ .+..|+.++.+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g 130 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG 130 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh----CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence 3456777777777888899999999999888888887764 479999999999998864 57788876544432
Q ss_pred e---EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhh
Q 011507 207 A---VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 207 ~---v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
. -.| .+|+.++.|.+.|++.|.++.. ..+|+++|.||||||||||+|.
T Consensus 131 ~~~~~v~-----------------------~iSA~~g~gi~~L~~~l~~~~~------~~~i~~vG~~nvGKStliN~L~ 181 (368)
T 3h2y_A 131 LKPEDVF-----------------------LISAAKGQGIAELADAIEYYRG------GKDVYVVGCTNVGKSTFINRMI 181 (368)
T ss_dssp CCCSEEE-----------------------ECCTTTCTTHHHHHHHHHHHHT------TSCEEEEEBTTSSHHHHHHHHH
T ss_pred CCcccEE-----------------------EEeCCCCcCHHHHHhhhhhhcc------cceEEEecCCCCChhHHHHHHH
Confidence 1 112 3566788999999999987653 3579999999999999999999
Q ss_pred cCc------cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 284 RCH------VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 284 ~~~------~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
+.. .+.+++.||||++.+.+.++.++.|+||||+..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 182 KEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp HHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred hhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 863 56689999999999999988889999999998774
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.82 E-value=5.3e-20 Score=193.42 Aligned_cols=212 Identities=16% Similarity=0.215 Sum_probs=138.2
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVA 209 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~ 209 (484)
....|..+....++.+|+||+|+|++++++..+..+.+++... ++|+|+|+||+|+........|..++.-.+ +.
T Consensus 67 ~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~-- 142 (439)
T 1mky_A 67 ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEP-- 142 (439)
T ss_dssp CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSC--
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHHHHHHHhcCCCCE--
Confidence 4566778888999999999999999999887777787777654 699999999999964311222233332112 11
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc--------cccceEEEEecCCCCchhHHHHH
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE--------IKKSITVGVIGLPNVGKSSLINS 281 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~--------~~~~~~V~vvG~pNvGKSSLIN~ 281 (484)
..+|+.++.|.+.|++.+....+... ....++|+|||.||||||||+|+
T Consensus 143 -----------------------~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~ 199 (439)
T 1mky_A 143 -----------------------IPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNA 199 (439)
T ss_dssp -----------------------EECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHH
T ss_pred -----------------------EEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHH
Confidence 24566788899999998877665322 12458999999999999999999
Q ss_pred hhcCccceecCCCCeeeeeEEE--Ee-CCcEEEEecCCCccCCC---------CChHHHHHHhccccccccCCCc---h-
Q 011507 282 LKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKS---------GENDASIALRNCKRIEKLDDPV---G- 345 (484)
Q Consensus 282 L~~~~~~~v~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~---------~~~~~~~~L~~~~~i~~l~d~~---~- 345 (484)
|.+...+.+++.||+|++.... .+ +..+.++||||+..... ........+..++.+..+.|.. .
T Consensus 200 l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~ 279 (439)
T 1mky_A 200 ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITR 279 (439)
T ss_dssp HHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCH
T ss_pred HhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCH
Confidence 9999888899999999986643 33 34688999999843211 1112233455555443333321 1
Q ss_pred ---hHHHHHhhCCcchhhhhcCCCCCC
Q 011507 346 ---PVKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 346 ---~v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
.+...+.....+.+.+.||+|...
T Consensus 280 ~~~~i~~~l~~~~~~~ilv~NK~Dl~~ 306 (439)
T 1mky_A 280 QDQRMAGLMERRGRASVVVFNKWDLVV 306 (439)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECGGGST
T ss_pred HHHHHHHHHHHcCCCEEEEEECccCCC
Confidence 122344455666777788887543
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.80 E-value=8.5e-20 Score=191.69 Aligned_cols=211 Identities=18% Similarity=0.243 Sum_probs=134.1
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEE
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f 210 (484)
....|..+....++.+|+||+|+|++++++..+..+.+++.. .++|+|+|+||+|+.+.+. .+.+++.-.+.
T Consensus 68 ~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~~lg~~---- 139 (436)
T 2hjg_A 68 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFYSLGFG---- 139 (436)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSGGGSSC----
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHHHcCCC----
Confidence 445677788889999999999999999988766677776653 4799999999999986421 11111110010
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc----cccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE----IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~----~~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
....+|+.++.|.+.|++.+....+... ....++|++||.||||||||+|+|.+..
T Consensus 140 --------------------~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 140 --------------------EPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp --------------------CCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred --------------------CeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 1235677888999999999988776432 1246899999999999999999999998
Q ss_pred cceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCC----Ch----HHHHHHhccccccccCCCch---h----HH
Q 011507 287 VANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG----EN----DASIALRNCKRIEKLDDPVG---P----VK 348 (484)
Q Consensus 287 ~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~----~~----~~~~~L~~~~~i~~l~d~~~---~----v~ 348 (484)
.+.+++.||+|++..... . +..+.|+||||+...... +. .....++.++.+..+.|... . +.
T Consensus 200 ~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~ 279 (436)
T 2hjg_A 200 RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIA 279 (436)
T ss_dssp TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHH
T ss_pred ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHH
Confidence 888999999999875433 3 447999999998654321 11 11235566665554444322 1 11
Q ss_pred HHHhhCCcchhhhhcCCCCCC
Q 011507 349 EILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 349 ~il~~~~~~~l~~~~ki~~~~ 369 (484)
..+...+.+.+.+.||+|...
T Consensus 280 ~~~~~~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 280 GYAHEAGKAVVIVVNKWDAVD 300 (436)
T ss_dssp HHHHHTTCEEEEEEECGGGSC
T ss_pred HHHHHcCCcEEEEEECccCCC
Confidence 122234556777788887543
No 7
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.78 E-value=7.8e-20 Score=182.91 Aligned_cols=143 Identities=19% Similarity=0.240 Sum_probs=102.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHH----HHHHHHHHHhc-CCeEEEEccch
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES----VEKWLKYLREE-LPAVAFKCSTQ 215 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~-~p~v~f~~~~~ 215 (484)
+++++|+||+|+|+|+|..+.+ .+++++..+ ..+++.||||||+||++.+. +..|.++|+.. ++++.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~s---- 157 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTS---- 157 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECC----
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEe----
Confidence 7999999999999999999987 889888532 35799999999999998754 78999999764 5655443
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCC-
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP- 294 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p- 294 (484)
+.++.|.+.|+..+ ..-.++|+|.+|||||||||+|.+.....+|..+
T Consensus 158 ---------------------a~~~~g~~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 158 ---------------------SKDQDSLADIIPHF----------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp ---------------------HHHHTTCTTTGGGG----------TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ---------------------cCCCCCHHHHHhhc----------CCCEEEEECCCCCCHHHHHHHhcccccccccceee
Confidence 23344545444433 2347999999999999999999987655566555
Q ss_pred ------CeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 295 ------GLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 295 ------g~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
++|+..+.+.++ ..+++||||+....
T Consensus 207 ~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~~~ 238 (307)
T 1t9h_A 207 HLGRGKHTTRHVELIHTS-GGLVADTPGFSSLE 238 (307)
T ss_dssp --------CCCCCEEEET-TEEEESSCSCSSCC
T ss_pred ecCCCcccccHHHHhhcC-CEEEecCCCccccc
Confidence 577776666665 56899999998653
No 8
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.77 E-value=7e-19 Score=185.75 Aligned_cols=211 Identities=18% Similarity=0.227 Sum_probs=137.5
Q ss_pred cchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEE
Q 011507 130 NSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVA 209 (484)
Q Consensus 130 ~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~ 209 (484)
...+.|..+....+..+|+||+|+|+++++.....++.+++.. .++|+|+|+||+|+.... ..+..++...+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~-- 160 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGE-- 160 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGGGSSSS--
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh--hhHHHHHHcCCCc--
Confidence 3467788888899999999999999999988888888887754 479999999999997542 1222222221211
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc----cccceEEEEecCCCCchhHHHHHhhcC
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE----IKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~----~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...+|+..+.|.+.|++.+..+.+... ....++|+++|.||||||||+|+|.+.
T Consensus 161 ----------------------~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 161 ----------------------PYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp ----------------------EEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred ----------------------eEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 114566778899999999987765322 235689999999999999999999998
Q ss_pred ccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCccCCCC----ChH----HHHHHhccccccccCCCchh-------H
Q 011507 286 HVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSG----END----ASIALRNCKRIEKLDDPVGP-------V 347 (484)
Q Consensus 286 ~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~~~~~----~~~----~~~~L~~~~~i~~l~d~~~~-------v 347 (484)
..+.+++.||+|++... +.. +..+.|+||||+...... +.. ....++.++.+..+.|.... +
T Consensus 219 ~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~ 298 (456)
T 4dcu_A 219 ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI 298 (456)
T ss_dssp TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHH
Confidence 87889999999998643 333 457899999998754311 111 12245666666555443321 1
Q ss_pred HHHHhhCCcchhhhhcCCCCC
Q 011507 348 KEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 348 ~~il~~~~~~~l~~~~ki~~~ 368 (484)
...+.....+.+.+.||+|..
T Consensus 299 ~~~~~~~~~~~ilv~NK~Dl~ 319 (456)
T 4dcu_A 299 AGYAHEAGKAVVIVVNKWDAV 319 (456)
T ss_dssp HHHHHHTTCEEEEEEECGGGS
T ss_pred HHHHHHcCCCEEEEEEChhcC
Confidence 222333456677788988754
No 9
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.73 E-value=2.8e-18 Score=174.90 Aligned_cols=152 Identities=22% Similarity=0.259 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHH---HHHHHHHHHhc-CC
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES---VEKWLKYLREE-LP 206 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~---~~~wl~~l~~~-~p 206 (484)
+..++.+++.+++++|+|++ +||++|..+.+ .+++++..+ ..+++.||||||+||++.+. +..|+.+|+.. ++
T Consensus 117 R~~~~~~~~~i~anvD~v~i-v~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~ 194 (358)
T 2rcn_A 117 RPDFYDGVKPIAANIDQIVI-VSAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR 194 (358)
T ss_dssp EC-----CEEEEECCCEEEE-EEESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CcchhhHHHHHHhcCCEEEE-EEeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc
Confidence 34455566777899999995 58999988877 688887432 13688899999999999875 77899999865 56
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
++.+ |+..+.|.+.|...+. .-.++|+|.+|||||||||+|.+..
T Consensus 195 v~~~-------------------------Sa~~~~gl~~L~~~~~----------G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 195 VLMV-------------------------SSHTQDGLKPLEEALT----------GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEC-------------------------BTTTTBTHHHHHHHHT----------TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEE-------------------------ecCCCcCHHHHHHhcC----------CCEEEEECCCCccHHHHHHHHhccc
Confidence 4433 3345667777765442 2478999999999999999999876
Q ss_pred c-ceecCCC---C----eeeeeEEEEeCCcEEEEecCCCccC
Q 011507 287 V-ANVGATP---G----LTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 287 ~-~~v~~~p---g----~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
. ..+|... | +|+..+.+.+.....++||||+...
T Consensus 240 ~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 240 NEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF 281 (358)
T ss_dssp SCCCCC-------------CCCEEEECTTSCEEEECHHHHTC
T ss_pred cccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh
Confidence 5 5555443 3 5666666777777789999999653
No 10
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.68 E-value=2.2e-16 Score=157.92 Aligned_cols=141 Identities=21% Similarity=0.302 Sum_probs=104.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHH---HHHHHHHHHHhc-CCeEEEEccchh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE---SVEKWLKYLREE-LPAVAFKCSTQE 216 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e---~~~~wl~~l~~~-~p~v~f~~~~~~ 216 (484)
.+.++|+||+|+|+++|..+.. .+++++... ..++|+|+|+||+||++.. ....|..+++.. ++.+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~-~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~-------- 146 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNY-LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVL-------- 146 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEE--------
T ss_pred HHHhcCEEEEEEECCCCCCCHH-HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEE--------
Confidence 6889999999999999964433 455655321 1478999999999999875 267888888654 3322
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCC-
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG- 295 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg- 295 (484)
.+|+.++.|.+.|++.+.. -.++++|.+|||||||+|+|. .....+|....
T Consensus 147 -----------------~~SA~~g~gi~~L~~~l~G----------~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~ 198 (302)
T 2yv5_A 147 -----------------KVSAKTGEGIDELVDYLEG----------FICILAGPSGVGKSSILSRLT-GEELRTQEVSEK 198 (302)
T ss_dssp -----------------ECCTTTCTTHHHHHHHTTT----------CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---
T ss_pred -----------------EEECCCCCCHHHHHhhccC----------cEEEEECCCCCCHHHHHHHHH-HhhCcccccccc
Confidence 3455677889988877642 468999999999999999999 65555565554
Q ss_pred ------eeeeeEEEEeCCcEEEEecCCCcc
Q 011507 296 ------LTRSMQEVQLDKNVKLLDCPGVVM 319 (484)
Q Consensus 296 ------~Tr~~~~~~l~~~i~liDTPGi~~ 319 (484)
+|+....+.+....+++||||+..
T Consensus 199 ~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 199 TERGRHTTTGVRLIPFGKGSFVGDTPGFSK 228 (302)
T ss_dssp ------CCCCEEEEEETTTEEEESSCCCSS
T ss_pred cCCCCCceeeEEEEEcCCCcEEEECcCcCc
Confidence 676666666655678999999864
No 11
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.65 E-value=1.1e-17 Score=170.97 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHhhh-cCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHh-cCCeEE
Q 011507 132 DRAFYKELVKVIEV-SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLRE-ELPAVA 209 (484)
Q Consensus 132 ~k~~~~el~kvie~-sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~-~~p~v~ 209 (484)
++++.+.+..+-+. +|.+..|+|++.|++++++.+++++....+.++++++|||+||+++.....|..|++. .++.-.
T Consensus 43 ~~~~~~~l~~~~~~~~~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~ 122 (357)
T 2e87_A 43 RLREELRVRTVSNVVRDNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDP 122 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCH
Confidence 33444444444333 4666678899999999999999988554457888999999999999999999999987 433211
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh--------------hhhccc-ccceEEEEecCCCCc
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY--------------SRSHEI-KKSITVGVIGLPNVG 274 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~--------------~~~~~~-~~~~~V~vvG~pNvG 274 (484)
+.+.. ....+...+..++... ...... ...++|+++|.||||
T Consensus 123 ~~~~~-----------------------~~~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvG 179 (357)
T 2e87_A 123 NEIAE-----------------------LRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVG 179 (357)
T ss_dssp HHHHH-----------------------HHHHHHHHHHHHHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSS
T ss_pred HHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCC
Confidence 11110 1111122222222111 111111 356899999999999
Q ss_pred hhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 275 KSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 275 KSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
||||||+|.+.. ..++..|++|++.+...+ +..+.++||||+....
T Consensus 180 KSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 228 (357)
T 2e87_A 180 KSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRP 228 (357)
T ss_dssp HHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSC
T ss_pred HHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccc
Confidence 999999999987 568889999998876554 2458999999997653
No 12
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.62 E-value=2.7e-16 Score=157.63 Aligned_cols=175 Identities=22% Similarity=0.196 Sum_probs=121.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCC-------hHHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGE-------NDASI 329 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~-------~~~~~ 329 (484)
++++|+|+|.||||||||+|+|.+.+++.+++.||+|++...... +.++.|+||||+..+.... ..+..
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~ 88 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQ 88 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHH
Confidence 478999999999999999999999999999999999998765432 4579999999998764211 11223
Q ss_pred HHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCC
Q 011507 330 ALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKI 409 (484)
Q Consensus 330 ~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki 409 (484)
.+..++.+..+.|... ..+.++. . .++..+.....
T Consensus 89 ~l~~aD~il~VvD~~~----------------------~~~~~~~-~----------------------~~~~~l~~~~~ 123 (308)
T 3iev_A 89 SLEEADVILFMIDATE----------------------GWRPRDE-E----------------------IYQNFIKPLNK 123 (308)
T ss_dssp HHHHCSEEEEEEETTT----------------------BSCHHHH-H----------------------HHHHHTGGGCC
T ss_pred HhhcCCEEEEEEeCCC----------------------CCCchhH-H----------------------HHHHHHHhcCC
Confidence 4455554444333211 0111111 0 00111222346
Q ss_pred CcccCCCCCCCC-Cchh-hhhHHHhhhcc-chhhhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 410 PYYTMPPARDQG-IPSE-ARIVSELGKEF-NVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 410 ~~~~~pp~~~~~-~~~~-~~iv~~~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
|.+.+.++.|.. .... ...+..+.+.+ .+..+++.|+....++..+...+ ..++|.||++||+|++||++.
T Consensus 124 pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l-~~~l~~~~~~~~~~~~td~~~ 197 (308)
T 3iev_A 124 PVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTI-LKYLPEGEPLFPEDMITDLPL 197 (308)
T ss_dssp CEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHH-HHHSCBCCCSSCTTCCBCCCH
T ss_pred CEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHH-HHhCccCCCCCCcccccCCCH
Confidence 777777777754 2222 44556666666 46678999999999999999999 889999999999999999864
No 13
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.62 E-value=1.5e-15 Score=151.62 Aligned_cols=144 Identities=24% Similarity=0.325 Sum_probs=101.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHH---HHHHHHHHHhcCCeEEEEccchhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRES---VEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~---~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
.+.++|+||+|+|+++|..+. ..+++++... ..+.|+|||+||+||.+... ...|.+++...++. |
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~--~------- 150 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPI--V------- 150 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCE--E-------
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcE--E-------
Confidence 578899999999999997543 3445544321 14789999999999998654 56788776543222 2
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCC---
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATP--- 294 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p--- 294 (484)
..|+.++.|++.|+..+.. -.++++|.+|+|||||+|+|.+.....+|...
T Consensus 151 ----------------~~SAktg~gv~~lf~~l~g----------eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~ 204 (301)
T 1u0l_A 151 ----------------KTSAKTGMGIEELKEYLKG----------KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKL 204 (301)
T ss_dssp ----------------ECCTTTCTTHHHHHHHHSS----------SEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred ----------------EEECCCCcCHHHHHHHhcC----------CeEEEECCCCCcHHHHHHHhcccccccccceeccc
Confidence 3455677889988877642 46899999999999999999987655555444
Q ss_pred ----CeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 295 ----GLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 295 ----g~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
++|+..+.+.+....+++||||+....
T Consensus 205 ~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~ 235 (301)
T 1u0l_A 205 QRGRHTTTTAQLLKFDFGGYVVDTPGFANLE 235 (301)
T ss_dssp -----CCCSCCEEECTTSCEEESSCSSTTCC
T ss_pred CCCCCceeeeEEEEcCCCCEEEECcCCCccC
Confidence 366655555555566899999987553
No 14
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.60 E-value=2.4e-16 Score=157.57 Aligned_cols=171 Identities=21% Similarity=0.236 Sum_probs=111.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~-----~~~~~~L~ 332 (484)
+..+|+|||.||||||||+|+|++.+.+.+++.|+||++.....+ +.++.|+||||+..+...- ..+...++
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~ 85 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA 85 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999889999999998654332 4578999999998763210 11223445
Q ss_pred ccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHc--CCCC
Q 011507 333 NCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNE--GKIP 410 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~--gki~ 410 (484)
.++.+..+.|... .+...+..+ +..+.. +..|
T Consensus 86 ~ad~il~VvD~~~---------------------~~~~~~~~i-------------------------~~~l~~~~~~~p 119 (301)
T 1wf3_A 86 DVNAVVWVVDLRH---------------------PPTPEDELV-------------------------ARALKPLVGKVP 119 (301)
T ss_dssp SCSEEEEEEETTS---------------------CCCHHHHHH-------------------------HHHHGGGTTTSC
T ss_pred cCCEEEEEEECCC---------------------CCChHHHHH-------------------------HHHHHhhcCCCC
Confidence 5554444433211 111111111 111111 2456
Q ss_pred cccCCCCCCCCCchh--hhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCcccccccc-ccccc
Q 011507 411 YYTMPPARDQGIPSE--ARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAML-EVCNV 481 (484)
Q Consensus 411 ~~~~pp~~~~~~~~~--~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~-td~~~ 481 (484)
.+.+-++.|...... .+.+..+ +.+..+++.|+....++..+.+.+ ...+|.||++||+|++ ||++.
T Consensus 120 ~ilV~NK~Dl~~~~~~~~~~~~~~---~~~~~~~~iSA~~g~gv~~l~~~l-~~~l~~~~~~y~~~~~~td~~~ 189 (301)
T 1wf3_A 120 ILLVGNKLDAAKYPEEAMKAYHEL---LPEAEPRMLSALDERQVAELKADL-LALMPEGPFFYPEDYAKSDQTF 189 (301)
T ss_dssp EEEEEECGGGCSSHHHHHHHHHHT---STTSEEEECCTTCHHHHHHHHHHH-HTTCCBCCCSSCTTCCSBSSCH
T ss_pred EEEEEECcccCCchHHHHHHHHHh---cCcCcEEEEeCCCCCCHHHHHHHH-HHhcccCCCCCCcccccCCCCH
Confidence 666666666443222 1222223 344567888998889998888888 7888999999999999 88763
No 15
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.51 E-value=4.5e-15 Score=148.28 Aligned_cols=178 Identities=18% Similarity=0.206 Sum_probs=114.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCc-cCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVV-MLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~-~~~~~~~~~~~~L~~~~~ 336 (484)
++..|+|||.||||||||+|+|.+.+++.+++.||+|++.....+ +.++.|+||||+. .+.. .....+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~l~~~~~~~~- 82 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---AINRLMNKAA- 82 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---HHHHHHTCCT-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---hHHHHHHHHH-
Confidence 356899999999999999999999998889999999987654322 4478999999997 2210 0000111000
Q ss_pred ccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCC
Q 011507 337 IEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPP 416 (484)
Q Consensus 337 i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp 416 (484)
...+.+. ..+..++....+...+. .++..+.....|.+.+-+
T Consensus 83 ~~~l~~~-------------D~vl~Vvd~~~~~~~~~-------------------------~i~~~l~~~~~P~ilvlN 124 (301)
T 1ega_A 83 SSSIGDV-------------ELVIFVVEGTRWTPDDE-------------------------MVLNKLREGKAPVILAVN 124 (301)
T ss_dssp TSCCCCE-------------EEEEEEEETTCCCHHHH-------------------------HHHHHHHSSSSCEEEEEE
T ss_pred HHHHhcC-------------CEEEEEEeCCCCCHHHH-------------------------HHHHHHHhcCCCEEEEEE
Confidence 0000000 00111111111222221 122223334567777778
Q ss_pred CCCCCC-chh-hhhHHHhhhccchhhhhcccccccccCCCcCCCCCeeecCCCCccccccccccccc
Q 011507 417 ARDQGI-PSE-ARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 417 ~~~~~~-~~~-~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
+.|... ... .+.+..+.+.+++..+++.|+....++..+.+.+ ..++|.||++||++++||++-
T Consensus 125 K~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i-~~~l~~~~~~~~~~~~~d~~~ 190 (301)
T 1ega_A 125 KVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV-RKHLPEATHHFPEDYITDRSQ 190 (301)
T ss_dssp STTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH-HTTCCBCCCSSCTTCCSCCSH
T ss_pred CcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH-HHhCCcCCCCCCccccCCCCH
Confidence 888654 222 3456667777776678899999999999999998 888999999999999998763
No 16
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=3.6e-15 Score=154.56 Aligned_cols=211 Identities=16% Similarity=0.128 Sum_probs=83.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e---------------------C----CcEEEEecC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L---------------------D----KNVKLLDCP 315 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l---------------------~----~~i~liDTP 315 (484)
++|+|||.||||||||+|+|++.+ +.++++||||++..... + + .++.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999998 78999999998765432 0 1 258899999
Q ss_pred CCccCCCCChH----HHHHHhccccccccCCCch-------------hHHHH--------------HhhCCcchhhhhcC
Q 011507 316 GVVMLKSGEND----ASIALRNCKRIEKLDDPVG-------------PVKEI--------------LNRCPANLLISLYK 364 (484)
Q Consensus 316 Gi~~~~~~~~~----~~~~L~~~~~i~~l~d~~~-------------~v~~i--------------l~~~~~~~l~~~~k 364 (484)
|+....+.... +...+++++.+.++.|... |+.++ +.+.- +.+....+
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~-~~~~k~~~ 158 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGW-DKFAKRIK 158 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTT-HHHHSTTT
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHh
Confidence 99864322111 1123567776665554322 33322 00000 00000000
Q ss_pred CCCCC-------------CHHHHHHHHHHHhCccccCCcccHHHHHHHHHHH-HHcCCCCcccCCCCCCCCCchhhhhHH
Q 011507 365 LPSFD-------------SVDDFLQKVATVRGKLKKGGIVDVEAAARIILHD-WNEGKIPYYTMPPARDQGIPSEARIVS 430 (484)
Q Consensus 365 i~~~~-------------~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d-~~~gki~~~~~pp~~~~~~~~~~~iv~ 430 (484)
-.... ...+.+..+....+.-.. ..+.+..-...+.. ...-..|.+.+.++.|.... ..+.
T Consensus 159 ~~~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~--~~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~~~---~~l~ 233 (397)
T 1wxq_A 159 LQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED--PTKWSQDDLLAFASEIRRVNKPMVIAANKADAASD---EQIK 233 (397)
T ss_dssp SSCCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC--GGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGSCH---HHHH
T ss_pred hcCccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc--cccCCHHHHHHHHHhhhccCCCEEEEEeCccccch---HHHH
Confidence 00000 000111111111111000 00111111111111 12223677777788775421 2222
Q ss_pred Hhhhccc--hhhhhcccccccccCCCcCC-CCCeeecCCCCccccccccccccc
Q 011507 431 ELGKEFN--VNEVYKNESSFIGSLKSVDD-FQPVEVLPCCPLNFDEAMLEVCNV 481 (484)
Q Consensus 431 ~~~~~~~--~~~l~~~~~~~~~~l~~~~~-~~~~~~~~~gp~~~~~~~~td~~~ 481 (484)
.+.+.+. -..+++.|+....++..+.. .+ +.++|.||++||+|+++|+..
T Consensus 234 ~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l-~~~~p~~~~~~~~~~l~~~~~ 286 (397)
T 1wxq_A 234 RLVREEEKRGYIVIPTSAAAELTLRKAAKAGF-IEYIPGASEFKVLRDMSEKQK 286 (397)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHHHSCSSSCC-CCSCC----------------
T ss_pred HHHHHHhhcCCcEEEEeccchhhHHHHHhhhh-hhhcCCCccccccccCCHHHH
Confidence 3322221 13688999999999998887 66 899999999999999998764
No 17
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.45 E-value=4.9e-14 Score=144.51 Aligned_cols=87 Identities=22% Similarity=0.355 Sum_probs=69.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC----hHHHHHHhcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~----~~~~~~L~~~ 334 (484)
..+||+||+||||||||+|+|++.+ +.++++||||+++....+ +.++.|+||||++...+.. ..+...++.|
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a 150 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC 150 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence 4689999999999999999999998 578999999999876432 5689999999999764432 3455678999
Q ss_pred ccccccCCCchhHHH
Q 011507 335 KRIEKLDDPVGPVKE 349 (484)
Q Consensus 335 ~~i~~l~d~~~~v~~ 349 (484)
+.+.++.|...|+.+
T Consensus 151 d~il~vvD~~~p~~~ 165 (376)
T 4a9a_A 151 NLLFIILDVNKPLHH 165 (376)
T ss_dssp SEEEEEEETTSHHHH
T ss_pred CccccccccCccHHH
Confidence 999888887766543
No 18
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.23 E-value=4.4e-13 Score=129.88 Aligned_cols=60 Identities=18% Similarity=0.171 Sum_probs=43.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC-CeeeeeEEEE--e-CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQEVQ--L-DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p-g~Tr~~~~~~--l-~~~i~liDTPGi~~~ 320 (484)
..++|+|||.||||||||+|+|++.....++..+ |+|+..+... . +..+.|+||||+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~ 83 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSS 83 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSST
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCC
Confidence 4689999999999999999999999876665544 6887765543 2 457999999999765
No 19
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.20 E-value=8.6e-12 Score=130.77 Aligned_cols=106 Identities=25% Similarity=0.300 Sum_probs=65.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCC--C----hHHHHHHhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG--E----NDASIALRN 333 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~--~----~~~~~~L~~ 333 (484)
.+|+|||.||||||||+|+|++.+.+.|++.||+|++..... + +..+.|+||||+...... . ..+..++++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 369999999999999999999999888999999999876543 3 457899999999753211 1 234456788
Q ss_pred cccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 334 CKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 334 ~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
++.+..+.|... . +..++.....+.+.+.||+|..
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~ 123 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 123 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCc
Confidence 888877665422 2 3344555567788888998753
No 20
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.15 E-value=5.9e-12 Score=122.17 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=50.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCC-eeeeeEEE--Ee-CCcEEEEecCCCccCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEV--QL-DKNVKLLDCPGVVMLKSG 323 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg-~Tr~~~~~--~l-~~~i~liDTPGi~~~~~~ 323 (484)
..++|+|+|.||||||||+|+|.+.....++..|+ +|+..... .. +..+.|+||||+......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~ 87 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDH 87 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCC
Confidence 46899999999999999999999988777776676 77766543 23 457999999999876443
No 21
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.13 E-value=3.3e-12 Score=130.76 Aligned_cols=107 Identities=22% Similarity=0.296 Sum_probs=58.7
Q ss_pred ceE-EEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC-CcEEEEecCCCccCCCCC--hHH---HHHHh
Q 011507 262 SIT-VGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD-KNVKLLDCPGVVMLKSGE--NDA---SIALR 332 (484)
Q Consensus 262 ~~~-V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~-~~i~liDTPGi~~~~~~~--~~~---~~~L~ 332 (484)
.+. |+|||+||||||||+|+|.+... .+++.||+|++... +.++ ..+.++||||++...+.+ ..+ ...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHH
Confidence 344 99999999999999999999875 78889999987644 4443 568899999987642221 111 12245
Q ss_pred ccccccccCCCchhH----------HHHHhhC---CcchhhhhcCCCCCC
Q 011507 333 NCKRIEKLDDPVGPV----------KEILNRC---PANLLISLYKLPSFD 369 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v----------~~il~~~---~~~~l~~~~ki~~~~ 369 (484)
.++.+.++.|...+. ..++... ..+.+.+.|+++..+
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred hCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 566665555532221 2334332 234555667776543
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.12 E-value=2.6e-11 Score=126.96 Aligned_cols=106 Identities=26% Similarity=0.380 Sum_probs=62.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC-----ChHHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG-----ENDASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~-----~~~~~~~L~~~ 334 (484)
.+|+|||.||||||||+|+|.+.+.+.++++||+|++.....+ +..+.|+||||+...... ......++.++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999998889999999999877654 457999999999754221 11234567778
Q ss_pred ccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 335 KRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 335 ~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
+.+..+.|... . +..++.+...+.+.+.||+|..
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~ 124 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 124 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCc
Confidence 87766655422 2 2344555667788888998754
No 23
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.09 E-value=3e-11 Score=122.56 Aligned_cols=168 Identities=18% Similarity=0.177 Sum_probs=100.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC--CcEEEEecCCCccCCCCC----hHHHHHHhcc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD--KNVKLLDCPGVVMLKSGE----NDASIALRNC 334 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~--~~i~liDTPGi~~~~~~~----~~~~~~L~~~ 334 (484)
..|+|||+||||||||||+|++.+. .++++|++|..... +.++ ..+.|+||||++...... ..+...+..|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 4699999999999999999998875 57899999987664 3444 579999999997643221 2222233445
Q ss_pred ccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHc-----CCC
Q 011507 335 KRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNE-----GKI 409 (484)
Q Consensus 335 ~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~-----gki 409 (484)
+.+.++.|.... ...+..+-+. .++.++.. ...
T Consensus 238 d~ll~VvD~s~~--------------------~~~~~~~~~~----------------------~~~~eL~~~~~~l~~~ 275 (342)
T 1lnz_A 238 RVIVHVIDMSGL--------------------EGRDPYDDYL----------------------TINQELSEYNLRLTER 275 (342)
T ss_dssp CEEEEEEESSCS--------------------SCCCHHHHHH----------------------HHHHHHHHSCSSTTTS
T ss_pred cEEEEEEECCcc--------------------cccChHHHHH----------------------HHHHHHHHhhhhhcCC
Confidence 544444433110 0011111100 11111111 245
Q ss_pred CcccCCCCCCCCCchhhhhHHHhhhccch-hhhhcccccccccCCCcCCCCCeeecCCCCc--ccccccc
Q 011507 410 PYYTMPPARDQGIPSEARIVSELGKEFNV-NEVYKNESSFIGSLKSVDDFQPVEVLPCCPL--NFDEAML 476 (484)
Q Consensus 410 ~~~~~pp~~~~~~~~~~~iv~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~--~~~~~~~ 476 (484)
|.+.+.++.|..... +.+..+.+.+.. ..++..|+....++..+...+ ..++...|. .|+++++
T Consensus 276 p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l-~~~l~~~~~~~~y~~e~l 342 (342)
T 1lnz_A 276 PQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV-ANQLENTPEFPLYDEEEL 342 (342)
T ss_dssp CBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHH-HHHHTSCCCCCSSCSCCC
T ss_pred CEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHH-HHHHhhCccccCCCcccC
Confidence 667777777754322 223344444432 257788888888888888777 666666555 7887764
No 24
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.07 E-value=8e-11 Score=108.06 Aligned_cols=61 Identities=31% Similarity=0.485 Sum_probs=44.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~ 321 (484)
..++|+|+|.+|||||||+|+|.+.. ...+++.||+|+....+.++..+.|+||||+..+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~ 83 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAK 83 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccc
Confidence 46899999999999999999999886 66788999999998888888899999999987654
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.07 E-value=7.7e-11 Score=124.14 Aligned_cols=107 Identities=26% Similarity=0.363 Sum_probs=65.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCC-----hHHHHHHhc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGE-----NDASIALRN 333 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~-----~~~~~~L~~ 333 (484)
..+|+|||.||||||||+|+|.+.+.+.+++.||+|++.....+ +..+.|+||||+......- ..+..++.+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999999999899999999999887664 4579999999987432221 223456777
Q ss_pred cccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 334 CKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 334 ~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
++.+..+.|... . +..++.....+.+.+.|++|..
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 887776665432 1 2345555667778888988754
No 26
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.04 E-value=1.2e-10 Score=123.34 Aligned_cols=111 Identities=24% Similarity=0.272 Sum_probs=53.4
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--Ee-CCcEEEEecCCCccCCCCChH-----HHHHH
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVVMLKSGEND-----ASIAL 331 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~~~~~~~~~-----~~~~L 331 (484)
...++|+|+|.||||||||+|+|.+...+.+++.||||++.... .+ +..+.|+||||+..+...... ....+
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45789999999999999999999999888899999999987643 33 347999999999764321111 12234
Q ss_pred hccccccccCCCch--------hHHHHHhhC-CcchhhhhcCCCCCCC
Q 011507 332 RNCKRIEKLDDPVG--------PVKEILNRC-PANLLISLYKLPSFDS 370 (484)
Q Consensus 332 ~~~~~i~~l~d~~~--------~v~~il~~~-~~~~l~~~~ki~~~~~ 370 (484)
.+++.+..+.|... ....++..+ ..+.+.+.||+|....
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~ 358 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAAN 358 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTT
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCc
Confidence 56666655554332 223344443 3467778899986543
No 27
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.04 E-value=6e-11 Score=120.97 Aligned_cols=82 Identities=27% Similarity=0.378 Sum_probs=57.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC------------------CcEEEEecCCCccCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD------------------KNVKLLDCPGVVMLK 321 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~------------------~~i~liDTPGi~~~~ 321 (484)
.++|+|||.||||||||+|+|++.. +.++++||+|..... +.++ ..+.|+||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 4689999999999999999999988 679999999988654 2222 369999999998652
Q ss_pred C----CChHHHHHHhccccccccCCCc
Q 011507 322 S----GENDASIALRNCKRIEKLDDPV 344 (484)
Q Consensus 322 ~----~~~~~~~~L~~~~~i~~l~d~~ 344 (484)
+ -...+...+++++.+.++.|..
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecC
Confidence 1 1223445678888887766543
No 28
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.02 E-value=8e-10 Score=107.59 Aligned_cols=86 Identities=27% Similarity=0.314 Sum_probs=61.0
Q ss_pred HHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCC
Q 011507 245 TLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 245 ~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~ 321 (484)
.|.+.+..+.... ...++|+|+|.+|||||||+|+|++...+.+++.+++|....... . +..+.|+||||+....
T Consensus 21 ~l~~~~~~~~~~~--~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~ 98 (262)
T 3def_A 21 KLIEFFGKLKQKD--MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98 (262)
T ss_dssp HHHHHHHHHHHTT--CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT
T ss_pred HHHHHHHHHhhcc--CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc
Confidence 3444444433321 246899999999999999999999999888999999988766543 3 3478999999998764
Q ss_pred CCChHHHHHHh
Q 011507 322 SGENDASIALR 332 (484)
Q Consensus 322 ~~~~~~~~~L~ 332 (484)
.........+.
T Consensus 99 ~~~~~~~~~i~ 109 (262)
T 3def_A 99 YVNHQALELIK 109 (262)
T ss_dssp EECHHHHHHHH
T ss_pred cchHHHHHHHH
Confidence 44444333333
No 29
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.02 E-value=2.1e-10 Score=107.76 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=74.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeC----CcEEEEecCCCccCCCCChH-------HH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGEND-------AS 328 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~----~~i~liDTPGi~~~~~~~~~-------~~ 328 (484)
..++|+|+|.+|||||||+|+|.+.. .+.++..||+|+......+. ..+.|+||||+..+...... ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 45799999999999999999999987 67899999999998776664 68999999998766433211 11
Q ss_pred HHHhc---cccccccCCCc---hh----HHHHHhhCCcchhhhhcCCCCCC
Q 011507 329 IALRN---CKRIEKLDDPV---GP----VKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 329 ~~L~~---~~~i~~l~d~~---~~----v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
..++. ++.+..+.|.. .. +...+.....+.+.+.||+|...
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 23333 33344444432 11 11233334456777788887553
No 30
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.02 E-value=1.2e-10 Score=123.37 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=77.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--Ee-CCcEEEEecCCCc-cCCCCC-----hHHHHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QL-DKNVKLLDCPGVV-MLKSGE-----NDASIAL 331 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l-~~~i~liDTPGi~-~~~~~~-----~~~~~~L 331 (484)
..++|+|||.||||||||+|+|.+...+.+++.||||++.... .+ +..+.|+||||+. .+.... ......+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 4589999999999999999999999878899999999987543 33 3478999999997 543211 2234567
Q ss_pred hccccccccCCCchh----HHHHHhhC-CcchhhhhcCCCCCC
Q 011507 332 RNCKRIEKLDDPVGP----VKEILNRC-PANLLISLYKLPSFD 369 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~----v~~il~~~-~~~~l~~~~ki~~~~ 369 (484)
..++.+..+.|...+ ...++..+ ..+.+.+.||+|...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVE 364 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCC
T ss_pred hcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECccccc
Confidence 788877766654221 12233322 346678889988643
No 31
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.02 E-value=2.5e-10 Score=104.31 Aligned_cols=108 Identities=28% Similarity=0.296 Sum_probs=74.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChH-------HHHHHhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGEND-------ASIALRN 333 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~-------~~~~L~~ 333 (484)
..++|+|+|.+|||||||+|+|.+.....+++.+|+|+.......+..+.++||||+......... ....+++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 357899999999999999999999988889999999999888888889999999998765332111 1122333
Q ss_pred c---ccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 334 C---KRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 334 ~---~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
+ +.+..+.|... . +...+.....+.+.+.||+|..
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 3 34434433221 1 1223344455677777887754
No 32
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.02 E-value=1e-09 Score=107.31 Aligned_cols=62 Identities=26% Similarity=0.297 Sum_probs=52.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~ 322 (484)
..++|+|+|.+|||||||+|+|.+...+.+++.+|+|.....+.+ +..+.|+||||+.....
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 468999999999999999999999998888999999987665543 34699999999976543
No 33
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.01 E-value=1.8e-10 Score=113.16 Aligned_cols=104 Identities=28% Similarity=0.363 Sum_probs=71.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCC----Ch--HH---HH
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSG----EN--DA---SI 329 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~----~~--~~---~~ 329 (484)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.|+||||+...... .. .. ..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999998 589999999988765432 457999999999765421 11 11 12
Q ss_pred HHhccccccccCCCchhHH-----HHHhhCCcchhhhhcCCC
Q 011507 330 ALRNCKRIEKLDDPVGPVK-----EILNRCPANLLISLYKLP 366 (484)
Q Consensus 330 ~L~~~~~i~~l~d~~~~v~-----~il~~~~~~~l~~~~ki~ 366 (484)
....++.+..+.|....-. ..+.....+.+.+.|++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~D 123 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLD 123 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHH
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECcc
Confidence 3367777766666544211 122233445666677765
No 34
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.01 E-value=2.1e-10 Score=111.73 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=70.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccCCCC----Ch--H-HHHHH-
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSG----EN--D-ASIAL- 331 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~----~~--~-~~~~L- 331 (484)
.+|+++|.||||||||+|+|++.+ ..+++.||+|.+..... . +..+.|+||||+...... .. . ....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 379999999999999999999987 57999999998766543 3 347899999999765431 11 1 11223
Q ss_pred -hccccccccCCCchhH-----HHHHhhCCcchhhhhcCCC
Q 011507 332 -RNCKRIEKLDDPVGPV-----KEILNRCPANLLISLYKLP 366 (484)
Q Consensus 332 -~~~~~i~~l~d~~~~v-----~~il~~~~~~~l~~~~ki~ 366 (484)
.+++.+..+.|....- ...+.....+.+.++|++|
T Consensus 81 ~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~D 121 (256)
T 3iby_A 81 DLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMD 121 (256)
T ss_dssp HSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred hCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChh
Confidence 6677777776654432 1223334556677777765
No 35
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.99 E-value=1.1e-09 Score=99.66 Aligned_cols=56 Identities=38% Similarity=0.588 Sum_probs=49.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
++|+|+|.+|||||||+|+|.+.. ..++..||+|.....+.++ .+.++||||+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~ 57 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFM 57 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCcccc
Confidence 579999999999999999999887 4678889999988877776 8999999998654
No 36
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.99 E-value=2.6e-10 Score=117.47 Aligned_cols=83 Identities=27% Similarity=0.400 Sum_probs=47.6
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e------------------CCcEEEEecCCCcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L------------------DKNVKLLDCPGVVM 319 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l------------------~~~i~liDTPGi~~ 319 (484)
....+|+|||.||||||||+|+|++..+ .+++.|++|....... + +..+.|+||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3568899999999999999999999886 8999999998765432 2 23589999999997
Q ss_pred CCCCC----hHHHHHHhccccccccCCC
Q 011507 320 LKSGE----NDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 320 ~~~~~----~~~~~~L~~~~~i~~l~d~ 343 (484)
..+.. ..+...+++++.+.++.|.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~ 126 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRA 126 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEec
Confidence 64422 2455677888887666543
No 37
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.99 E-value=2.7e-11 Score=119.51 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-----eecCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NVGATPG 295 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-----~v~~~pg 295 (484)
..++|+|||.||||||||+|+|.+...+ .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4679999999999999999999998865 4556676
No 38
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=6e-10 Score=114.84 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=64.6
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEE--EeC------------------CcEEEEecCCCcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEV--QLD------------------KNVKLLDCPGVVM 319 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~--~l~------------------~~i~liDTPGi~~ 319 (484)
....+|||||.||||||||+|+|++..++.++++||||..+... .++ ..+.++||||++.
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 35689999999999999999999999988999999999986643 333 2589999999987
Q ss_pred CCCC----ChHHHHHHhccccccccCC
Q 011507 320 LKSG----ENDASIALRNCKRIEKLDD 342 (484)
Q Consensus 320 ~~~~----~~~~~~~L~~~~~i~~l~d 342 (484)
..+. ...+...++.++.+.++.|
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd 124 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVR 124 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6443 2355666787777655543
No 39
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.93 E-value=7.5e-10 Score=115.36 Aligned_cols=82 Identities=27% Similarity=0.210 Sum_probs=49.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--eC-C-cEEEEecCCCccCCCCC----hHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--LD-K-NVKLLDCPGVVMLKSGE----NDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l~-~-~i~liDTPGi~~~~~~~----~~~~~~L~ 332 (484)
..++|+|+|.+|||||||+|+|++...+.++..+|+|.+..... +. . .+.|+||||+....... ......+.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 46899999999999999999999999888899999998876543 32 2 79999999997653221 22344566
Q ss_pred ccccccccCC
Q 011507 333 NCKRIEKLDD 342 (484)
Q Consensus 333 ~~~~i~~l~d 342 (484)
+++.+..+.|
T Consensus 113 ~aD~vllVvD 122 (423)
T 3qq5_A 113 RADCGILVTD 122 (423)
T ss_dssp SCSEEEEECS
T ss_pred cCCEEEEEEe
Confidence 6665554444
No 40
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.90 E-value=1.2e-09 Score=106.29 Aligned_cols=105 Identities=25% Similarity=0.352 Sum_probs=69.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChH--H-HHHH--h
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEND--A-SIAL--R 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~--~-~~~L--~ 332 (484)
..++|+++|.||||||||+|+|++... .+++.||+|.......+ +..+.|+||||.........+ . ...+ .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 358899999999999999999999875 58999999988766543 447899999999765432211 1 1222 3
Q ss_pred ccccccccCCCchhH-----HHHHhhCCcchhhhhcCCC
Q 011507 333 NCKRIEKLDDPVGPV-----KEILNRCPANLLISLYKLP 366 (484)
Q Consensus 333 ~~~~i~~l~d~~~~v-----~~il~~~~~~~l~~~~ki~ 366 (484)
+++.+..+.|....- ...+.....+.+...|++|
T Consensus 83 ~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~D 121 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAID 121 (258)
T ss_dssp CCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHH
T ss_pred CCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcC
Confidence 566665555543321 1122233445666667655
No 41
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.87 E-value=2.2e-09 Score=106.68 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=25.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-----ceecCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-----ANVGATP 294 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-----~~v~~~p 294 (484)
...+|+|||.||||||||+|+|.+... ..++..|
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p 61 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRP 61 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------C
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeee
Confidence 457899999999999999999999887 4455667
No 42
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.86 E-value=2.1e-09 Score=97.38 Aligned_cols=60 Identities=32% Similarity=0.493 Sum_probs=48.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC-CcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD-KNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~-~~i~liDTPGi~~~ 320 (484)
...+|+|||.||||||||+|+|.+...+.+++.||+|++... +.++ ..+.++||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccc
Confidence 357899999999999999999999877678899999987543 4444 36889999999653
No 43
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.85 E-value=2.6e-09 Score=104.46 Aligned_cols=104 Identities=29% Similarity=0.435 Sum_probs=69.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChH---HHHHH--hc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEND---ASIAL--RN 333 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~---~~~~L--~~ 333 (484)
.++|+++|.||||||||+|+|++... .+++.||+|.......+ +..+.|+||||+......... ....+ .+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 47899999999999999999999876 89999999988765433 346899999999865333221 11112 45
Q ss_pred cccccccCCCchhHH------HHHhhCCcchhhhhcCCC
Q 011507 334 CKRIEKLDDPVGPVK------EILNRCPANLLISLYKLP 366 (484)
Q Consensus 334 ~~~i~~l~d~~~~v~------~il~~~~~~~l~~~~ki~ 366 (484)
++.+..+.|...... .++.....+.+...|++|
T Consensus 82 ~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 82 ADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp CSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred CcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChh
Confidence 666666655543221 122222145566666665
No 44
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.84 E-value=3e-09 Score=101.72 Aligned_cols=63 Identities=19% Similarity=0.314 Sum_probs=43.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC--CeeeeeEEEE--e-CCcEEEEecCCCccCCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP--GLTRSMQEVQ--L-DKNVKLLDCPGVVMLKSGE 324 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p--g~Tr~~~~~~--l-~~~i~liDTPGi~~~~~~~ 324 (484)
..++|+|||.+|||||||+|+|++.... .+..| ++|+..+... + +..+.|+||||+.......
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~ 95 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN 95 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----C
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH
Confidence 4689999999999999999999998863 44444 7777766533 3 4579999999998765443
No 45
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.83 E-value=2.1e-09 Score=118.81 Aligned_cols=108 Identities=19% Similarity=0.245 Sum_probs=73.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCe--------------eeee------EE------------------
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL--------------TRSM------QE------------------ 302 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~--------------Tr~~------~~------------------ 302 (484)
..++|+|+|.||||||||||+|.|..++.++..|+| |+.. ..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 468999999999999999999999999999999988 4432 00
Q ss_pred -----------------EEeC-----CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhH----HHHH----h
Q 011507 303 -----------------VQLD-----KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV----KEIL----N 352 (484)
Q Consensus 303 -----------------~~l~-----~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v----~~il----~ 352 (484)
+.++ .++.|+||||+.........+...+.+++.+..+.|...+. ..++ .
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 0111 47999999999865322233345677888887776653221 1122 2
Q ss_pred hCCcchhhhhcCCCCC
Q 011507 353 RCPANLLISLYKLPSF 368 (484)
Q Consensus 353 ~~~~~~l~~~~ki~~~ 368 (484)
....+.+.++|++|..
T Consensus 228 ~~~~~iiiVlNK~Dl~ 243 (695)
T 2j69_A 228 GRGLTVFFLVNAWDQV 243 (695)
T ss_dssp TSCCCEEEEEECGGGG
T ss_pred hhCCCEEEEEECcccc
Confidence 2344567778888754
No 46
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.82 E-value=1.6e-09 Score=95.77 Aligned_cols=105 Identities=30% Similarity=0.336 Sum_probs=58.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCCh----HHHHHHhccc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGEN----DASIALRNCK 335 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~----~~~~~L~~~~ 335 (484)
.+|+|+|.+|||||||+|+|.+.....++..|++|.......+ +..+.|+||||......... .....+..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 4799999999999999999999887778889999987665432 45789999999876432111 1223455665
Q ss_pred cccccCCCch---h----HHHHHhhCCcchhhhhcCCCC
Q 011507 336 RIEKLDDPVG---P----VKEILNRCPANLLISLYKLPS 367 (484)
Q Consensus 336 ~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~ 367 (484)
.+..+.|... . +..++.....+.+.+.|++|.
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 120 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDD 120 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCS
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccc
Confidence 5544443321 1 122233333445556666654
No 47
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=2.6e-09 Score=97.51 Aligned_cols=165 Identities=13% Similarity=0.063 Sum_probs=85.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
..++|+|+|.+|||||||+|+|.+.....+.++.|.+.....+ -+..+.|+||||...... .....+.+++.+..+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRS---SWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC----CG---GGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHhHHH---HHHHHhcCCCEEEEE
Confidence 5689999999999999999999977655666776755432222 245789999999854321 122344555544333
Q ss_pred CCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhCccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCCCC
Q 011507 341 DDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVRGKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQ 420 (484)
Q Consensus 341 ~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~~~~ 420 (484)
.|. ....+.+.....+...... ......|.+.+-++.|.
T Consensus 91 ~d~----------------------~~~~s~~~~~~~~~~~~~~-------------------~~~~~~piilv~NK~Dl 129 (187)
T 1zj6_A 91 VDS----------------------TDRERISVTREELYKMLAH-------------------EDLRKAGLLIFANKQDV 129 (187)
T ss_dssp EET----------------------TCTTTHHHHHHHHHHHHTS-------------------GGGTTCEEEEEEECTTS
T ss_pred EeC----------------------CCHHHHHHHHHHHHHHHhc-------------------hhhCCCeEEEEEECCCC
Confidence 322 1111222211111100000 00123566666666665
Q ss_pred CCchh-hhhHHHhhh----ccchhhhhcccccccccCCCcCCCCCeeecCCCCcccc
Q 011507 421 GIPSE-ARIVSELGK----EFNVNEVYKNESSFIGSLKSVDDFQPVEVLPCCPLNFD 472 (484)
Q Consensus 421 ~~~~~-~~iv~~~~~----~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~gp~~~~ 472 (484)
..... .++...+.. ..++ .++..|+....++..+...+ +..++.+|+.+|
T Consensus 130 ~~~~~~~~i~~~~~~~~~~~~~~-~~~~~Sa~~g~gi~~l~~~l-~~~~~~~~~~~~ 184 (187)
T 1zj6_A 130 KECMTVAEISQFLKLTSIKDHQW-HIQACCALTGEGLCQGLEWM-MSRLKIRLEHHH 184 (187)
T ss_dssp TTCCCHHHHHHHHTGGGCCSSCE-EEEECBTTTTBTHHHHHHHH-HHHHCC------
T ss_pred cCCCCHHHHHHHhChhhhcCCCc-EEEEccCCCCcCHHHHHHHH-HHHHHHHhhhhc
Confidence 43222 122222211 1122 56778888888888888777 666666665554
No 48
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.81 E-value=3.9e-09 Score=113.96 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=44.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCC-CeeeeeEEE------EeCCcEEEEecCCCccCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATP-GLTRSMQEV------QLDKNVKLLDCPGVVMLK 321 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~p-g~Tr~~~~~------~l~~~i~liDTPGi~~~~ 321 (484)
+...|+|||.||||||||||+|.|...+ .++.++ ++|+....+ ..+..+.|+||||+..+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 4588999999999999999999998753 333322 455544322 124579999999998753
No 49
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.80 E-value=2.4e-09 Score=115.32 Aligned_cols=109 Identities=20% Similarity=0.209 Sum_probs=72.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEE----------------------------------
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQ---------------------------------- 304 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~---------------------------------- 304 (484)
...+|+|+|.+|||||||||+|++.+++ .++..|+||+......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999999876 6899999877422111
Q ss_pred ----eC----CcEEEEecCCCccCCCC---C-----hHHHHHHhccccccccCCCch-----hHHHHHhhC---Ccchhh
Q 011507 305 ----LD----KNVKLLDCPGVVMLKSG---E-----NDASIALRNCKRIEKLDDPVG-----PVKEILNRC---PANLLI 360 (484)
Q Consensus 305 ----l~----~~i~liDTPGi~~~~~~---~-----~~~~~~L~~~~~i~~l~d~~~-----~v~~il~~~---~~~~l~ 360 (484)
++ .++.|+||||+..+... . ..+...+..++.+..+.|+.. ....++..+ ..+.+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvil 223 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRV 223 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEE
Confidence 00 36899999999864221 0 223345677777776666532 223344333 345677
Q ss_pred hhcCCCCCC
Q 011507 361 SLYKLPSFD 369 (484)
Q Consensus 361 ~~~ki~~~~ 369 (484)
++||+|...
T Consensus 224 VlNK~Dl~~ 232 (550)
T 2qpt_A 224 VLNKADMVE 232 (550)
T ss_dssp EEECGGGSC
T ss_pred EEECCCccC
Confidence 888887654
No 50
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.79 E-value=2.5e-09 Score=109.37 Aligned_cols=81 Identities=30% Similarity=0.390 Sum_probs=60.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE------------------------eCCcEEEEecCCCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ------------------------LDKNVKLLDCPGVV 318 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~------------------------l~~~i~liDTPGi~ 318 (484)
++|++||.||||||||+|+|++.. +.+++.|++|....... .+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 579999999999999999999886 57889999887644321 13469999999998
Q ss_pred cCCCC----ChHHHHHHhccccccccCCCc
Q 011507 319 MLKSG----ENDASIALRNCKRIEKLDDPV 344 (484)
Q Consensus 319 ~~~~~----~~~~~~~L~~~~~i~~l~d~~ 344 (484)
...+. ...+...++.++.+.++.|..
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECC
Confidence 76432 234555688888887666543
No 51
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.79 E-value=4.6e-09 Score=103.15 Aligned_cols=82 Identities=27% Similarity=0.396 Sum_probs=59.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--CCcEEEEecCCCccCCCCCh--H-HHHHHh--cc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGEN--D-ASIALR--NC 334 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--~~~i~liDTPGi~~~~~~~~--~-~~~~L~--~~ 334 (484)
.++|+++|.||||||||+|+|++.+ ..+++.||+|.....+.+ +..+.|+||||......... . ....+. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 4789999999999999999999986 468999999988766554 45799999999875432221 1 122333 45
Q ss_pred ccccccCCCc
Q 011507 335 KRIEKLDDPV 344 (484)
Q Consensus 335 ~~i~~l~d~~ 344 (484)
+.+..+.|..
T Consensus 82 d~vi~V~D~t 91 (272)
T 3b1v_A 82 DSILNVVDAT 91 (272)
T ss_dssp SEEEEEEEGG
T ss_pred CEEEEEecCC
Confidence 5555555543
No 52
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.76 E-value=3.9e-09 Score=99.20 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=48.3
Q ss_pred cceEEEEecCCCCchhHHHHHh-hcCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSL-KRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L-~~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+| .+.....+.+++|+|.....+.++. .+.|+||||...
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 76 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHH
Confidence 5689999999999999999994 4554567789999999887776543 588999999654
No 53
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.76 E-value=4.8e-09 Score=97.47 Aligned_cols=61 Identities=31% Similarity=0.462 Sum_probs=41.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
....+|+|+|.+|||||||+|+|.+.. .+.+++.+|+|+....+.++.++.++||||+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~ 85 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYA 85 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCccc
Confidence 356789999999999999999999987 6677889999988766666668999999998653
No 54
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=5.1e-09 Score=95.62 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=53.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||||+|.+.... ...++.|++.....+.++. .+.|+||||...... .....+++++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ 90 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT---LTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC---SHHHHHTTCCE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh---hhHHHhccCCE
Confidence 4689999999999999999999987642 3445556666655565543 588999999654321 12334555555
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 91 ii~v~d 96 (195)
T 1x3s_A 91 VILVYD 96 (195)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544443
No 55
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.74 E-value=1.4e-09 Score=114.64 Aligned_cols=109 Identities=26% Similarity=0.362 Sum_probs=65.4
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCccCCCCChH-----HHHHH
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGEND-----ASIAL 331 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~~~~~~~~-----~~~~L 331 (484)
...++|+|+|.||||||||+|+|.+...+.+++.||+|++... +.+ +..+.|+||||+......... ....+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 3578999999999999999999999888889999999998653 333 347899999999654221111 11234
Q ss_pred hccccccccCCCchh----HHHHHhhC-CcchhhhhcCCCCC
Q 011507 332 RNCKRIEKLDDPVGP----VKEILNRC-PANLLISLYKLPSF 368 (484)
Q Consensus 332 ~~~~~i~~l~d~~~~----v~~il~~~-~~~~l~~~~ki~~~ 368 (484)
..++.+..+.|...+ ...++..+ ..+.+.+.||+|..
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~ 343 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLV 343 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSS
T ss_pred hcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCC
Confidence 555655555554322 12233332 24566777887753
No 56
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.74 E-value=1.1e-08 Score=113.14 Aligned_cols=40 Identities=13% Similarity=-0.017 Sum_probs=33.0
Q ss_pred chhhhhcccccccccCCCcCCCCCee---ecCCCCcccccccccccc
Q 011507 437 NVNEVYKNESSFIGSLKSVDDFQPVE---VLPCCPLNFDEAMLEVCN 480 (484)
Q Consensus 437 ~~~~l~~~~~~~~~~l~~~~~~~~~~---~~~~gp~~~~~~~~td~~ 480 (484)
.+..++..|+..+.++..+.+.+ .. |+|+||++ ++++|+.
T Consensus 250 g~~~VV~iSA~~G~GvdeL~eaI-~~e~~ffpe~P~y---d~ltDr~ 292 (772)
T 3zvr_A 250 GYIGVVNRSQKDIDGKKDITAAL-AAERKFFLSHPSY---RHLADRM 292 (772)
T ss_dssp CEEECCCCCCEESSSSEEHHHHH-HHHHHHHHHCTTT---GGGGGGC
T ss_pred cCCceEEecccccccchhHHHHH-HHHHHhccCCcch---hhhhhcc
Confidence 45678899999999999999887 43 78999986 7788874
No 57
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.73 E-value=1.3e-08 Score=91.12 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=42.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.||||||||+|+|.+.....+.+.+|+|.....+.++. .+.++||||...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 64 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC----
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCc
Confidence 35899999999999999999999998877888899887666666654 578999999754
No 58
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.71 E-value=1.3e-08 Score=95.23 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=54.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~----~~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... .....+.|++.....+... ..+.|+||||........ ...+.+++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d 86 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK---DVYYIGAS 86 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---HHHHTTCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---HHHhhcCC
Confidence 468999999999999999999997653 3446667776665554443 248899999976543211 23455565
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 87 ~~i~v~d~ 94 (218)
T 4djt_A 87 GAILFFDV 94 (218)
T ss_dssp EEEEEEET
T ss_pred EEEEEEeC
Confidence 55544443
No 59
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.71 E-value=1.6e-08 Score=90.63 Aligned_cols=58 Identities=40% Similarity=0.656 Sum_probs=41.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~~ 320 (484)
..+|+++|.||||||||+|+|.+... .++..||+|..... +.+ +..+.++||||....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~ 63 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 63 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccC
Confidence 47899999999999999999998763 56788998876543 333 346899999998754
No 60
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.70 E-value=2.1e-08 Score=88.95 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=56.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
.++|+|+|.+|||||||+|+|.+.... ...+++|++.....+.++. .+.|+||||..... ......+.+++.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~d~~ 79 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA---SLAPXYYRNAQAA 79 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGHHHHHTTCSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh---hhhhhhhccCcEE
Confidence 478999999999999999999987643 3455667666666666544 68899999964321 2234456677766
Q ss_pred cccCCCc
Q 011507 338 EKLDDPV 344 (484)
Q Consensus 338 ~~l~d~~ 344 (484)
..+.|..
T Consensus 80 i~v~d~~ 86 (170)
T 1ek0_A 80 LVVYDVT 86 (170)
T ss_dssp EEEEETT
T ss_pred EEEEecC
Confidence 6555543
No 61
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.69 E-value=1.6e-08 Score=99.06 Aligned_cols=59 Identities=25% Similarity=0.303 Sum_probs=39.3
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecC-------CCCeeeeeEEEEe--CC---cEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA-------TPGLTRSMQEVQL--DK---NVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~-------~pg~Tr~~~~~~l--~~---~i~liDTPGi~~~ 320 (484)
.++|+|||.||||||||+|+|.+........ .|+++.......+ +. .+.|+||||+...
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~ 78 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 78 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCC
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCcccc
Confidence 5899999999999999999999887655443 3444444433333 22 7899999999654
No 62
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.5e-08 Score=90.23 Aligned_cols=135 Identities=20% Similarity=0.196 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhhhh---cccccceEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEEeCCcEEEEecCCC
Q 011507 243 AETLIKLLKNYSRS---HEIKKSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQLDKNVKLLDCPGV 317 (484)
Q Consensus 243 ~~~Ll~~Lk~~~~~---~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~l~~~i~liDTPGi 317 (484)
...+.+.+..+... +.....++|+|+|.+|||||||+|+|.+.... .++..|++|... ....+.|+||||.
T Consensus 26 ~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~ 101 (193)
T 2ged_A 26 ISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGH 101 (193)
T ss_dssp CHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTC
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCC
Confidence 35566666555432 22245789999999999999999999987632 224445555433 3457889999998
Q ss_pred ccCCCCChHH-HHHHhccccccccCCCc-hh---------HHHHHhh------CCcchhhhhcCCCCCC--CHHHHHHHH
Q 011507 318 VMLKSGENDA-SIALRNCKRIEKLDDPV-GP---------VKEILNR------CPANLLISLYKLPSFD--SVDDFLQKV 378 (484)
Q Consensus 318 ~~~~~~~~~~-~~~L~~~~~i~~l~d~~-~~---------v~~il~~------~~~~~l~~~~ki~~~~--~~~e~l~~l 378 (484)
.......... ...+..++.+..+.|.. .. +..++.. ...+.+.+.|++|... ..+++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l 181 (193)
T 2ged_A 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDAL 181 (193)
T ss_dssp CBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHH
Confidence 7553221111 11222355555555543 11 1122221 1345677788888643 455665555
Q ss_pred HHH
Q 011507 379 ATV 381 (484)
Q Consensus 379 a~~ 381 (484)
...
T Consensus 182 ~~~ 184 (193)
T 2ged_A 182 ESE 184 (193)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.66 E-value=4.2e-08 Score=89.59 Aligned_cols=103 Identities=17% Similarity=0.164 Sum_probs=63.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeC---------------------------------
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLD--------------------------------- 306 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~--------------------------------- 306 (484)
..++|+|+|.+|||||||||+|.+..... ..++.|.+-....+.++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 46899999999999999999999876421 11222222222222222
Q ss_pred -------CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-----H----HHHHhhCCcchhhhhcCCC
Q 011507 307 -------KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----V----KEILNRCPANLLISLYKLP 366 (484)
Q Consensus 307 -------~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-----v----~~il~~~~~~~l~~~~ki~ 366 (484)
..+.|+||||..... ......++.++.+..+.|...+ + ..+...+..+.+.+.||+|
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYA---SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCT---TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred ccCccceeEEEEEECCCcHHHH---HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 468899999965432 2234456777777666654332 1 1233335566778888887
No 64
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.65 E-value=2.4e-08 Score=94.47 Aligned_cols=59 Identities=29% Similarity=0.414 Sum_probs=44.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+.... +++.|++|+....... +..+.|+||||....
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCc
Confidence 4689999999999999999999998864 7788999988765432 347899999999653
No 65
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.63 E-value=3.2e-08 Score=89.91 Aligned_cols=59 Identities=39% Similarity=0.625 Sum_probs=47.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEE--e-CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQ--L-DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~--l-~~~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+.. ..++..||+|.+..... . +..+.++||||....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~ 67 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSL 67 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCcc
Confidence 45799999999999999999999876 36778899987755433 3 457899999998754
No 66
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.61 E-value=1.2e-07 Score=85.78 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=60.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
+.++|+|+|.+|||||||+|+|.+... +...+++|..... +.++. .+.|+||||...... .....+.+++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~~ 77 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA---MRDQYMRTGE 77 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT---THHHHHHHCS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH---HHHHHHhcCC
Confidence 458999999999999999999998764 3444555543332 33333 367899999654322 2233455666
Q ss_pred cccccCCCchh-----H----HHHHhhC---CcchhhhhcCCCCC
Q 011507 336 RIEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPSF 368 (484)
Q Consensus 336 ~i~~l~d~~~~-----v----~~il~~~---~~~~l~~~~ki~~~ 368 (484)
.+..+.|...+ + ..+.... ..+.+.+.|++|..
T Consensus 78 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 122 (189)
T 4dsu_A 78 GFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP 122 (189)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence 55544443221 1 1122222 34566777887753
No 67
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.61 E-value=5e-08 Score=86.61 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=54.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+... ....+++|+|.....+..+ ..+.|+||||..... ......+.+++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~~~~~~ 81 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFR---ALAPMYYRGSAA 81 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhh---cccHhhCcCCCE
Confidence 458999999999999999999998773 3456778888776666654 368899999984331 112234455554
Q ss_pred ccccC
Q 011507 337 IEKLD 341 (484)
Q Consensus 337 i~~l~ 341 (484)
+..+.
T Consensus 82 ~i~v~ 86 (170)
T 1z0j_A 82 AIIVY 86 (170)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44333
No 68
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.60 E-value=3.6e-08 Score=87.45 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=35.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeC---CcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~ 320 (484)
.++|+|+|.||||||||+|+|.+.....+++.+|+|..... .++ ..+.++||||....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~D~~g~~~~ 62 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VVDGEEASLMVYDIWEQDGG 62 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEE-EETTEEEEEEEEECC-----
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEE-EECCEEEEEEEEECCCCccc
Confidence 47899999999999999999999888888889999886333 332 25789999997543
No 69
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.60 E-value=3.5e-08 Score=89.58 Aligned_cols=105 Identities=20% Similarity=0.198 Sum_probs=66.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
..++|+|+|.+|||||||+|+|.+.....+.+++|++.....+ -+..+.|+||||...... .....+++++.+..+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ii~v 95 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRS---SWNTYYTNTEFVIVV 95 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGTC---GGGGGGTTCCEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCHhHHH---HHHHHhccCCEEEEE
Confidence 4689999999999999999999998877788888876532222 235789999999854321 112245566655544
Q ss_pred CCCch-----hH----HHHHhh---CCcchhhhhcCCCCCC
Q 011507 341 DDPVG-----PV----KEILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 341 ~d~~~-----~v----~~il~~---~~~~~l~~~~ki~~~~ 369 (484)
.|... .+ ..++.. ...+.+.+.||+|...
T Consensus 96 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 96 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp EETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 44322 11 122222 2345666778877543
No 70
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.60 E-value=6.3e-08 Score=89.81 Aligned_cols=104 Identities=18% Similarity=0.212 Sum_probs=63.6
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~ 334 (484)
...++|+|+|.+|||||||+|+|.+.... ....|++|.. ...+.++. .+.|+||||....... ....+.++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~ 93 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI---TTAYYRGA 93 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCC-CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC---CHHHHTTC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH---HHHHhccC
Confidence 35689999999999999999999987642 3334444433 33444443 6899999997544221 23356667
Q ss_pred ccccccCCCchh-----HH----HHHhhC--CcchhhhhcCCCC
Q 011507 335 KRIEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPS 367 (484)
Q Consensus 335 ~~i~~l~d~~~~-----v~----~il~~~--~~~~l~~~~ki~~ 367 (484)
+.+..+.|...+ +. .+...+ ..+.+.+.+++|.
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl 137 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM 137 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 666655554322 11 122222 3456677788875
No 71
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.60 E-value=4.4e-08 Score=99.51 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=29.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-----eecCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NVGATPG 295 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-----~v~~~pg 295 (484)
...+|+|||.||||||||+|+|.+.+.+ .++..|+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3579999999999999999999998865 4566677
No 72
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.58 E-value=1.4e-07 Score=84.84 Aligned_cols=105 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+...... .+..|++.....+.++. .+.|+||||..... ......+++++.
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~ 87 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH---SLAPMYYRGAAA 87 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG---GGTHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh---hhhHHHhccCCE
Confidence 468999999999999999999998765332 23345555444555443 68999999964321 122345666776
Q ss_pred ccccCCCchh-----HH----HHHhhC--CcchhhhhcCCCCC
Q 011507 337 IEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (484)
Q Consensus 337 i~~l~d~~~~-----v~----~il~~~--~~~~l~~~~ki~~~ 368 (484)
+..+.|...+ +. .+.... ..+.+.+.+++|..
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 130 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL 130 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence 6655554322 11 222222 23456667887753
No 73
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.57 E-value=1.6e-07 Score=84.67 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=59.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc-cceecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH-VANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~-~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+.. .....++.+.+. ...+.++. .+.|+||||......... ..+++++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---~~~~~~~~ 80 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQ---TYSIDING 80 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCG---GGTTTCSE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHH---HHHhcCCE
Confidence 46899999999999999999999654 333344444444 23334443 568999999765422111 13444554
Q ss_pred ccccCCCch-----hH----HHHHhhC---CcchhhhhcCCCC
Q 011507 337 IEKLDDPVG-----PV----KEILNRC---PANLLISLYKLPS 367 (484)
Q Consensus 337 i~~l~d~~~-----~v----~~il~~~---~~~~l~~~~ki~~ 367 (484)
+..+.|... .+ ..++..+ ..+.+.+.|++|.
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 123 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL 123 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence 444433322 11 1223322 3356677788874
No 74
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.56 E-value=1.5e-07 Score=83.19 Aligned_cols=101 Identities=16% Similarity=0.179 Sum_probs=58.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++|+|+|.+|||||||+|+|.+.... ...+.++... ..+.++. .+.|+||||..... ......+++++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~---~~~~~~~~~~d~ 77 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT---AMRDLYMKNGQG 77 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC--CSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST---THHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH---HHHHHHhccCCE
Confidence 478999999999999999999986542 2222222221 2233332 57899999975432 223345566666
Q ss_pred ccccCCCchh-----H----HHHHhh---CCcchhhhhcCCCC
Q 011507 337 IEKLDDPVGP-----V----KEILNR---CPANLLISLYKLPS 367 (484)
Q Consensus 337 i~~l~d~~~~-----v----~~il~~---~~~~~l~~~~ki~~ 367 (484)
+..+.|...+ + ..++.. ...+.+.+.||+|.
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 120 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccc
Confidence 5544443221 1 122222 13455667777764
No 75
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.56 E-value=5.2e-08 Score=88.85 Aligned_cols=105 Identities=22% Similarity=0.230 Sum_probs=63.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
..++|+|+|.+|||||||+|+|.+.......++.|.+.....+ -+..+.++||||......... ..+.+++.+..+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~---~~~~~~d~ii~v 96 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQY-KNISFEVWDLGGQTGVRPYWR---CYFSDTDAVIYV 96 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEE-TTEEEEEEEECCSSSSCCCCS---SSSTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEE-CCEEEEEEECCCCHhHHHHHH---HHhhcCCEEEEE
Confidence 4689999999999999999999887765555555644332222 145789999999754322111 123455555444
Q ss_pred CCCc-----hhHH----HHHhh---CCcchhhhhcCCCCCC
Q 011507 341 DDPV-----GPVK----EILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 341 ~d~~-----~~v~----~il~~---~~~~~l~~~~ki~~~~ 369 (484)
.|.. ..+. .++.. ...+.+.+.||+|...
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 137 (189)
T 2x77_A 97 VDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPD 137 (189)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTT
T ss_pred EeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcC
Confidence 3332 1122 22222 1345677778887644
No 76
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.54 E-value=9.2e-08 Score=85.10 Aligned_cols=59 Identities=17% Similarity=0.320 Sum_probs=43.1
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVM 319 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~ 319 (484)
...++|+|+|.+|||||||+|+|.+.......++.|.+.....+. +..+.|+||||...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~Dt~G~~~ 63 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK-NLKFQVWDLGGLTS 63 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEET-TEEEEEEEECCCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEEC-CEEEEEEECCCChh
Confidence 356899999999999999999999877655555555443222221 45789999999753
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.54 E-value=4.1e-07 Score=79.87 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=59.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++|+++|.+|||||||+|+|.+..... ..++++.. ...+..+. .+.|+||||.... .......+.+++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~---~~~~~~~~~~~~~ 77 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY---SAMRDQYMRTGEG 77 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSC---CHHHHHHHHHCSE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhh---hHHHHHhhccCCE
Confidence 4789999999999999999999876432 22333322 22333332 4788999996533 2233345566666
Q ss_pred ccccCCCchh-----HH----HHHhhC---CcchhhhhcCCCCC
Q 011507 337 IEKLDDPVGP-----VK----EILNRC---PANLLISLYKLPSF 368 (484)
Q Consensus 337 i~~l~d~~~~-----v~----~il~~~---~~~~l~~~~ki~~~ 368 (484)
+..+.|.... +. .+...+ ..+.+.+.+++|..
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~ 121 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA 121 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence 5544443221 11 122221 34566777887754
No 78
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.53 E-value=1.1e-07 Score=102.04 Aligned_cols=180 Identities=14% Similarity=0.130 Sum_probs=90.5
Q ss_pred cCHHHHHHHHHhhhhh---c---ccccceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeE------EEEe--
Q 011507 241 LGAETLIKLLKNYSRS---H---EIKKSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQ------EVQL-- 305 (484)
Q Consensus 241 ~g~~~Ll~~Lk~~~~~---~---~~~~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~------~~~l-- 305 (484)
.|.+.++..++..... + .....++|++||.||||||||+|+|++.... ...++.|.+-... .+.+
T Consensus 14 ~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~ 93 (535)
T 3dpu_A 14 QGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD 93 (535)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS
T ss_pred hCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC
Confidence 4677888888776651 1 1235699999999999999999999987632 1223333322211 1111
Q ss_pred ---CCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhHHHHHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHh
Q 011507 306 ---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRCPANLLISLYKLPSFDSVDDFLQKVATVR 382 (484)
Q Consensus 306 ---~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~ 382 (484)
+..+.++||||.-..... ....+++++.+..+.|... +.+...++..+..
T Consensus 94 ~~~~~~~~i~Dt~G~e~~~~~---~~~~l~~~d~ii~V~D~s~----------------------~~~~~~~~~~l~~-- 146 (535)
T 3dpu_A 94 ELKECLFHFWDFGGQEIMHAS---HQFFMTRSSVYMLLLDSRT----------------------DSNKHYWLRHIEK-- 146 (535)
T ss_dssp TTTTCEEEEECCCSCCTTTTT---CHHHHHSSEEEEEEECGGG----------------------GGGHHHHHHHHHH--
T ss_pred CCceEEEEEEECCcHHHHHHH---HHHHccCCcEEEEEEeCCC----------------------chhHHHHHHHHHH--
Confidence 246899999995432221 1234556665555544321 1122222222211
Q ss_pred CccccCCcccHHHHHHHHHHHHHcCCCCcccCCCCCCCCCch--hhhhHHHhhhccchhhhhcccccccccCCCcCCCCC
Q 011507 383 GKLKKGGIVDVEAAARIILHDWNEGKIPYYTMPPARDQGIPS--EARIVSELGKEFNVNEVYKNESSFIGSLKSVDDFQP 460 (484)
Q Consensus 383 g~l~kgg~~d~~~aa~~~l~d~~~gki~~~~~pp~~~~~~~~--~~~iv~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 460 (484)
. ....|.+.+-++.|..... ..+.+..+...++. .++..|+....|+..+...+
T Consensus 147 ---------------------~-~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~vSA~~g~gi~eL~~~l- 202 (535)
T 3dpu_A 147 ---------------------Y-GGKSPVIVVMNKIDENPSYNIEQKKINERFPAIEN-RFHRISCKNGDGVESIAKSL- 202 (535)
T ss_dssp ---------------------H-SSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTT-CEEECCC-----CTTHHHHH-
T ss_pred ---------------------h-CCCCCEEEEEECCCcccccccCHHHHHHHHHhcCC-ceEEEecCcccCHHHHHHHH-
Confidence 0 1235666666666643221 12223333333332 36777888888888877776
Q ss_pred eeecCCCCccc
Q 011507 461 VEVLPCCPLNF 471 (484)
Q Consensus 461 ~~~~~~gp~~~ 471 (484)
...+...+..|
T Consensus 203 ~~~~~~~~~~~ 213 (535)
T 3dpu_A 203 KSAVLHPDSIY 213 (535)
T ss_dssp HHHHTCTTSGG
T ss_pred HHHHhcccchh
Confidence 55555555433
No 79
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.53 E-value=3e-07 Score=83.85 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=64.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ....|++|.. ...+.++. .+.|+||||..... ......+++++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d 90 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR---TITSSYYRGAH 90 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC---TTHHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh---hhHHHHHhhCC
Confidence 4589999999999999999999987642 3334444443 34455543 58899999965432 22334567777
Q ss_pred cccccCCCchh-----HHH----HHhhC--CcchhhhhcCCCCC
Q 011507 336 RIEKLDDPVGP-----VKE----ILNRC--PANLLISLYKLPSF 368 (484)
Q Consensus 336 ~i~~l~d~~~~-----v~~----il~~~--~~~~l~~~~ki~~~ 368 (484)
.+..+.|.... +.. +...+ ..+.+.+.|++|..
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~ 134 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 134 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 66655554332 111 22222 33566677887754
No 80
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.52 E-value=1.6e-07 Score=84.14 Aligned_cols=80 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|++.....+.++. .+.|+||||.... .......+.+++.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~d~ 90 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF---RAVTRSYYRGAAG 90 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGT---CHHHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHh---hhhHHHHhccCCE
Confidence 4689999999999999999999987642 2334455555555555543 6889999996432 2333445666666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 91 ~i~v~d~ 97 (179)
T 1z0f_A 91 ALMVYDI 97 (179)
T ss_dssp EEEEEET
T ss_pred EEEEEeC
Confidence 5555443
No 81
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.51 E-value=1.5e-07 Score=82.93 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=46.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee--eeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR--SMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr--~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++|+|+|.||||||||+|+|.+...... .+.++. ....+.++. .+.|+||||.... .......+.+++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~~~ 77 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF---ASMRDLYIKNGQG 77 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHHHHHHHHCSE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEECCEEEEEEEEECCCchhh---HHHHHHHhccCCE
Confidence 57899999999999999999997764322 222222 223344443 4889999996432 1122334555555
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 78 ~i~v~d 83 (167)
T 1kao_A 78 FILVYS 83 (167)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 444433
No 82
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=1.3e-07 Score=86.73 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=48.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+... ..+.+++|+|.....+.++. .+.|+||||...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 84 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQER 84 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchh
Confidence 468999999999999999999998764 35778889888777666542 688999999643
No 83
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.50 E-value=1.9e-07 Score=93.10 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=82.5
Q ss_pred CcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHH-HHHHHHhCCCCceeEEeeccCCC-CHHHHHHHHHHHHhcCC
Q 011507 129 DNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDM-EKMVMKAGPDKHLVLLLNKIDLV-PRESVEKWLKYLREELP 206 (484)
Q Consensus 129 ~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~l-e~~i~~~~~~K~~IlVLNKiDLv-p~e~~~~wl~~l~~~~p 206 (484)
+...+.|.......+..+|+||+|+|+.++.+..+..+ .+.+.. .+.|+|+|+||+|++ +.+.+..++..+.+.++
T Consensus 76 ~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 76 DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 56678888999999999999999999999877655554 444443 368999999999999 78888888888877763
Q ss_pred -eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc
Q 011507 207 -AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 207 -~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~ 258 (484)
...+ ..+|+.++.|.+.|++.|..+++.++
T Consensus 154 ~~~~i----------------------~~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 154 ELTEI----------------------VPISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp TCCCE----------------------EECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred CCCeE----------------------EEEeCCCCCCHHHHHHHHHHhCccCC
Confidence 2222 14566788899999999998887543
No 84
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.50 E-value=9.2e-08 Score=87.03 Aligned_cols=78 Identities=18% Similarity=0.275 Sum_probs=54.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
..++|+++|.+|||||||+|+|.+.....+.+++|++.....+. +..+.++||||..... ......+++++.+..+
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~~~---~~~~~~~~~~~~~i~v 90 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRKIR---PYWRSYFENTDILIYV 90 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEET-TEEEEEEECSSCGGGH---HHHHHHHTTCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEEC-CEEEEEEECCCCHHHH---HHHHHHhCCCCEEEEE
Confidence 46899999999999999999999988777778888765433222 4578899999964321 1223345566555444
Q ss_pred CC
Q 011507 341 DD 342 (484)
Q Consensus 341 ~d 342 (484)
.|
T Consensus 91 ~d 92 (181)
T 1fzq_A 91 ID 92 (181)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 85
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.49 E-value=7.8e-08 Score=88.04 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=50.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee--cCCCCeeeeeEEEEeCCcEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEVQLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v--~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
...+|+|+|.+|||||||+|+|.+.....+ .++.|++..... .-...+.|+||||...... .....+++++.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d~ii 91 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFE-KGRVAFTVFDMGGAKKFRG---LWETYYDNIDAVI 91 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEE-ETTEEEEEEEECCSGGGGG---GGGGGCTTCSEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEE-eCCEEEEEEECCCCHhHHH---HHHHHHhcCCEEE
Confidence 568999999999999999999999887665 666665443221 1244789999999854321 1112345666655
Q ss_pred ccCCC
Q 011507 339 KLDDP 343 (484)
Q Consensus 339 ~l~d~ 343 (484)
.+.|.
T Consensus 92 ~v~D~ 96 (199)
T 4bas_A 92 FVVDS 96 (199)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 55443
No 86
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.49 E-value=1.6e-07 Score=84.71 Aligned_cols=58 Identities=19% Similarity=0.371 Sum_probs=43.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+.......++.|.+.. .+.+ +..+.++||||....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE--EEEETTEEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE--EEEECCEEEEEEECCCCHhH
Confidence 578999999999999999999998777777777776543 2333 457889999998643
No 87
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.49 E-value=2.4e-07 Score=84.61 Aligned_cols=80 Identities=23% Similarity=0.238 Sum_probs=53.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||||+|.+...... .++.|++.....+.++ ..+.|+||||..... ......+++++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~ 100 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR---AITSAYYRGAVG 100 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC---TTHHHHHTTCCE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh---hhhHHHhccCCE
Confidence 468999999999999999999998775433 2334555544444443 367899999985432 223345666666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 101 vi~v~D~ 107 (193)
T 2oil_A 101 ALLVFDL 107 (193)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5555443
No 88
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.49 E-value=1.5e-07 Score=85.41 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=43.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.......++.|.+.....+ -+..+.|+||||..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQK 73 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEE-TTEEEEEEEECCSH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEE-CCEEEEEEECCCCH
Confidence 5689999999999999999999987755555566655432222 14578999999974
No 89
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.48 E-value=2e-07 Score=82.56 Aligned_cols=79 Identities=23% Similarity=0.241 Sum_probs=53.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..+..|++.....+.++. .+.|+||||..... ......+.+++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~---~~~~~~~~~~d~ 81 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH---SLAPMYYRGAQA 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG---GGHHHHHTTCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhh---hhhHHhccCCCE
Confidence 46899999999999999999999766433 345667776666665543 68899999964321 223344556655
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 82 ~i~v~d 87 (170)
T 1r2q_A 82 AIVVYD 87 (170)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544444
No 90
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.48 E-value=5.5e-07 Score=81.24 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=59.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee-e-eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR-S-MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr-~-~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ...+.++. . ...+.++. .+.|+||||...... .....+++++
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~d 91 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFV--DDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA---MREQYMRTGD 91 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS---SHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--CCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH---HHHHHHhcCC
Confidence 4689999999999999999999977532 22222222 2 22233443 356799999754322 2234566666
Q ss_pred cccccCCCchh-----HH----HHHhh---CCcchhhhhcCCCCC
Q 011507 336 RIEKLDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (484)
Q Consensus 336 ~i~~l~d~~~~-----v~----~il~~---~~~~~l~~~~ki~~~ 368 (484)
.+..+.|...+ +. .++.. ...+.+.+.||+|..
T Consensus 92 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 136 (183)
T 3kkq_A 92 GFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136 (183)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence 66555444322 21 22221 233566777887743
No 91
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.47 E-value=3.2e-07 Score=84.26 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=50.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
..++|+|+|.+|||||||+|+|.+............+.....+.++ ..+.|+||||... .......+++++.+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~~~~~~~~~~~d~i 102 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----TIQREGHMRWGEGF 102 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----CHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----ccchhhhhccCCEE
Confidence 4689999999999999999999987653222111112222223443 2588999999875 23344456666665
Q ss_pred cccCCC
Q 011507 338 EKLDDP 343 (484)
Q Consensus 338 ~~l~d~ 343 (484)
..+.|.
T Consensus 103 ilv~D~ 108 (196)
T 2atv_A 103 VLVYDI 108 (196)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 555443
No 92
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.47 E-value=6.3e-08 Score=98.36 Aligned_cols=24 Identities=33% Similarity=0.616 Sum_probs=22.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
....|+|+|+||||||||+|+|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 368899999999999999999996
No 93
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.47 E-value=5e-07 Score=83.51 Aligned_cols=104 Identities=21% Similarity=0.161 Sum_probs=62.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCC--eeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPG--LTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg--~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ....|+ ++.....+.++. .+.|+||||....... ....+++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d 82 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI---TSSYYRGSH 82 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC---CGGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH---HHHhccCCC
Confidence 4589999999999999999999987643 222333 333334455544 6899999997543221 112455666
Q ss_pred cccccCCCchh-----HH----HHHhhC--CcchhhhhcCCCCC
Q 011507 336 RIEKLDDPVGP-----VK----EILNRC--PANLLISLYKLPSF 368 (484)
Q Consensus 336 ~i~~l~d~~~~-----v~----~il~~~--~~~~l~~~~ki~~~ 368 (484)
.+..+.|...+ +. .+.... ..+.+.+.+++|..
T Consensus 83 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 126 (206)
T 2bcg_Y 83 GIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK 126 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 65555554322 11 122222 23456677887754
No 94
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.47 E-value=3.2e-07 Score=84.40 Aligned_cols=102 Identities=19% Similarity=0.094 Sum_probs=61.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... +...+++|... ..+.++. .+.|+||||.... .......+.+++
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~~ 87 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIRDNYFRSGE 87 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhh---HHHHHHHHhhCC
Confidence 468999999999999999999998763 33344443332 2234443 6889999996432 122234456666
Q ss_pred cccccCCCchh-----H----HHHHhhC---CcchhhhhcCCCC
Q 011507 336 RIEKLDDPVGP-----V----KEILNRC---PANLLISLYKLPS 367 (484)
Q Consensus 336 ~i~~l~d~~~~-----v----~~il~~~---~~~~l~~~~ki~~ 367 (484)
.+..+.|...+ + ..+.... ..+.+.+.|++|.
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 88 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 65555443321 1 1233322 3456677788774
No 95
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.47 E-value=1.9e-07 Score=86.14 Aligned_cols=80 Identities=26% Similarity=0.311 Sum_probs=48.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+... ..+.++.|++.....+.++. .+.|+||||.... .......+++++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF---RSIAKSYFRKADG 103 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC---HHHHHHHHHHCSE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch---hhhHHHHHhhCCE
Confidence 468999999999999999999998763 34556667666555555543 4889999996432 1223345566666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 104 iilv~d~ 110 (199)
T 2p5s_A 104 VLLLYDV 110 (199)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6555443
No 96
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.46 E-value=2.4e-07 Score=85.52 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=47.9
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEe---CCcEEEEecCCCccCCCCChHHHHHHhcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNC 334 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l---~~~i~liDTPGi~~~~~~~~~~~~~L~~~ 334 (484)
...++|+|+|.+|||||||+|+|.+..... ..+.++.. ...+.+ ...+.|+||||........ ...++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~ 96 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSE--GYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILP---YSFIIGV 96 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCS--CCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCC---GGGTTTC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCC--CCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHH---HHHHhcC
Confidence 357899999999999999999999877542 22223222 122222 2357899999975432211 1244555
Q ss_pred ccccccCCC
Q 011507 335 KRIEKLDDP 343 (484)
Q Consensus 335 ~~i~~l~d~ 343 (484)
+.+..+.|.
T Consensus 97 d~~i~v~d~ 105 (201)
T 3oes_A 97 HGYVLVYSV 105 (201)
T ss_dssp CEEEEEEET
T ss_pred CEEEEEEeC
Confidence 555544443
No 97
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.46 E-value=2.2e-07 Score=83.18 Aligned_cols=58 Identities=24% Similarity=0.301 Sum_probs=40.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|.+.....+.++. .+.|+||||..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCch
Confidence 4589999999999999999999987642 2233344444444455554 68999999954
No 98
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.44 E-value=3e-07 Score=81.12 Aligned_cols=77 Identities=18% Similarity=0.113 Sum_probs=46.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
+.++|+|+|.+|||||||+|+|.+.... ...++++... ..+.++. .+.|+||||.... .......+.+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~---~~~~~~~~~~~d 77 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIRDNYFRSGE 77 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---C---HHHHHHHHHHCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchh---HHHHHHHhhcCC
Confidence 3589999999999999999999987642 2333333222 2233443 6889999996432 122233455555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 78 ~~i~v~d 84 (168)
T 1u8z_A 78 GFLCVFS 84 (168)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544433
No 99
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=3.2e-07 Score=82.33 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=48.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.........|.++.... .+.++. .+.|+||||...... .....+.+++
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d 85 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS---VTHAYYRDAH 85 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------CCGGGCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHH---HHHHHccCCC
Confidence 46899999999999999999999887644444455544433 234443 688999999643211 1122345555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 86 ~ii~v~d 92 (180)
T 2g6b_A 86 ALLLLYD 92 (180)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544444
No 100
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.42 E-value=3.2e-07 Score=81.15 Aligned_cols=79 Identities=20% Similarity=0.212 Sum_probs=48.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|.+.....+.++. .+.|+||||....... ....+.+++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~d~ 80 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI---TKAYYRGAQA 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC---CHHHHTTCCE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHH---HHHHhcCCCE
Confidence 45899999999999999999999876422 122223333233344433 6889999996543221 1234455555
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 81 ~i~v~d 86 (168)
T 1z2a_A 81 CVLVFS 86 (168)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444433
No 101
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.41 E-value=2.1e-07 Score=97.38 Aligned_cols=106 Identities=15% Similarity=0.148 Sum_probs=65.4
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccce------------------------------ecCCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVAN------------------------------VGATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~------------------------------v~~~pg~Tr~~~~~~l---~ 306 (484)
+..++|+++|.+|+|||||+|+|+....+. ....+|+|.+.....+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 346899999999999999999996542111 1123788888765443 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-----------HH---HHHhhCCcc-hhhhhcCCCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------VK---EILNRCPAN-LLISLYKLPSF 368 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-----------v~---~il~~~~~~-~l~~~~ki~~~ 368 (484)
..+.|+||||.... .......+..++.+..+.|.... .. .++.....+ .+...||+|..
T Consensus 95 ~~~~iiDTPGh~~f---~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~ 168 (439)
T 3j2k_7 95 KHFTILDAPGHKSF---VPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDP 168 (439)
T ss_pred eEEEEEECCChHHH---HHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCc
Confidence 57999999996432 11222345556655555443221 11 223334444 66778999863
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.41 E-value=1e-07 Score=85.50 Aligned_cols=58 Identities=26% Similarity=0.534 Sum_probs=44.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+... ..+..|++|.+... +.+ +..+.|+||||...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEA 67 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHH
Confidence 568999999999999999999998775 34556666655433 333 35688999999754
No 103
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.41 E-value=3.7e-07 Score=81.77 Aligned_cols=59 Identities=19% Similarity=0.277 Sum_probs=42.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+.... ....|++|.+. ..+.++. .+.|+||||....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 71 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh
Confidence 4589999999999999999999987753 44455555443 3344443 5889999996543
No 104
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.41 E-value=1.6e-07 Score=93.64 Aligned_cols=108 Identities=17% Similarity=0.188 Sum_probs=69.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCC--CChHHHHHHhccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKS--GENDASIALRNCK 335 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~--~~~~~~~~L~~~~ 335 (484)
.++|+++|.||||||||+|+|.+.....+++.+|+|.......+ +..+.|+||||...... ........+++++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad 82 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQ 82 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccCC
Confidence 57899999999999999999998765667788999988765442 23688999999753200 0112334556777
Q ss_pred cccccCCCchh-----HHH---HHhh----C-CcchhhhhcCCCCCC
Q 011507 336 RIEKLDDPVGP-----VKE---ILNR----C-PANLLISLYKLPSFD 369 (484)
Q Consensus 336 ~i~~l~d~~~~-----v~~---il~~----~-~~~~l~~~~ki~~~~ 369 (484)
.+..+.|.... +.. .+.. . ..+.+.+.||+|...
T Consensus 83 ~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 83 VLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 66655543221 111 1211 1 346677778887554
No 105
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.41 E-value=2.4e-07 Score=85.14 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=60.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
..++|+|+|.+|||||||+|+|.+.......++.|.+. ..+.. +..+.|+||||..... ......+.+++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~iil 102 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNICFTVWDVGGQDKIR---PLWRHYFQNTQGLIF 102 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEE--EEEEETTEEEEEEECC-----C---TTHHHHHHTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeE--EEEEECCEEEEEEECCCCHhHH---HHHHHHhccCCEEEE
Confidence 56899999999999999999999876544433334222 12222 3468899999985432 123345667776665
Q ss_pred cCCCchh-----HHH----HHhh---CCcchhhhhcCCCCCC
Q 011507 340 LDDPVGP-----VKE----ILNR---CPANLLISLYKLPSFD 369 (484)
Q Consensus 340 l~d~~~~-----v~~----il~~---~~~~~l~~~~ki~~~~ 369 (484)
+.|...+ +.. ++.. ...+.+.+.||+|...
T Consensus 103 v~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 144 (192)
T 2b6h_A 103 VVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144 (192)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCC
Confidence 5543221 222 2221 1345667778887543
No 106
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.41 E-value=3.9e-07 Score=83.01 Aligned_cols=59 Identities=19% Similarity=0.233 Sum_probs=44.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|++.....+..+. .+.|+||||...
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 83 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQER 83 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHH
Confidence 3589999999999999999999987643 2345556666555555432 688999999643
No 107
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=4.4e-07 Score=82.58 Aligned_cols=108 Identities=19% Similarity=0.076 Sum_probs=57.8
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHH---Hh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVM---KA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~~le~~i~---~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~ 212 (484)
....+..+|+||+|+|+.+|.+.. .+..++. .. ..+.|+++|+||+||.+.+.. .....+... +....|
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~-- 155 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARK-HSMLFI-- 155 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHH--THHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHH-TTCEEE--
T ss_pred hHHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHH-cCCEEE--
Confidence 345667899999999999875432 2222222 21 136789999999999654322 222233332 222222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhH
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSS 277 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSS 277 (484)
..|+.++.|.+.|++.|.+........ ---+.+|+||||
T Consensus 156 ---------------------~~Sa~~~~gi~~l~~~l~~~~~~~~~~-----~~~~~~n~gkSs 194 (195)
T 1x3s_A 156 ---------------------EASAKTCDGVQCAFEELVEKIIQTPGL-----WESENQNSGPSS 194 (195)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHHHHTSGGG-----TCC---------
T ss_pred ---------------------EecCCCCCCHHHHHHHHHHHHHhhhhh-----hcccccCCCCCC
Confidence 345567789999998887766543211 112556999998
No 108
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.40 E-value=2.9e-07 Score=84.01 Aligned_cols=57 Identities=28% Similarity=0.416 Sum_probs=40.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc--cceecCCCCeeeeeEEEEe-CCcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH--VANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~--~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+.. .....++.|.+. ..+.+ +..+.|+||||...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~l~Dt~G~~~ 79 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKSSSLSFTVFDMSGQGR 79 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEECSSCEEEEEEECCSTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEECCEEEEEEECCCCHH
Confidence 46899999999999999999999876 333344444332 22333 45789999999653
No 109
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.40 E-value=4.9e-07 Score=83.24 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=54.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|++.....+..+. .+.|+||||..... ......+++++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ 83 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYR---TITTAYYRGAMG 83 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---HHHHTTGGGCSE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhc---chHHHhhcCCCE
Confidence 3589999999999999999999987643 2345556666555555543 68899999975321 122234566666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 84 ii~v~d~ 90 (203)
T 1zbd_A 84 FILMYDI 90 (203)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 6555544
No 110
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.39 E-value=4.1e-07 Score=80.73 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=39.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|.+.....+.++. .+.|+||||..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~ 66 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH
Confidence 46899999999999999999999876421 222233333333444443 57889999954
No 111
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.39 E-value=4e-07 Score=83.47 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=49.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|++.....+.++. .+.|+||||.... .......+++++.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~~~~~~~~~~d~ 101 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF---NSITSAYYRSAKG 101 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG---HHHHHHHHHHCSE
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH---HHHHHHHhcCCCE
Confidence 46899999999999999999999876432 234445555555555554 6889999996432 1222344566665
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 102 iilV~D 107 (192)
T 2il1_A 102 IILVYD 107 (192)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554444
No 112
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.39 E-value=4.3e-07 Score=82.77 Aligned_cols=80 Identities=24% Similarity=0.303 Sum_probs=50.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|++.....+.++. .+.|+||||..... .......+++++.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--~~~~~~~~~~~d~ 96 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR--KSMVQHYYRNVHA 96 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH--TTTHHHHHTTCCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh--hhhhHHHhcCCCE
Confidence 46899999999999999999999776432 233444444444455544 68999999964221 0112334555655
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 97 iilv~D 102 (189)
T 1z06_A 97 VVFVYD 102 (189)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544444
No 113
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.39 E-value=4.7e-07 Score=90.03 Aligned_cols=107 Identities=17% Similarity=0.103 Sum_probs=76.4
Q ss_pred CCCcchHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcC
Q 011507 127 NRDNSDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLREEL 205 (484)
Q Consensus 127 ~~~~~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~ 205 (484)
+.+...+.|.......+..+|+||+|+|+.++++.....+.+.+....++.|+|+|+||+||++... +..++..+ +
T Consensus 68 ~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~---~ 144 (301)
T 1wf3_A 68 PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL---L 144 (301)
T ss_dssp CCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT---S
T ss_pred hhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh---c
Confidence 4455667788889999999999999999999876555555555544323689999999999997655 55555444 2
Q ss_pred CeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc
Q 011507 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 206 p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~ 258 (484)
+...+ .++|+.++.|.+.|++.|..+++.++
T Consensus 145 ~~~~~----------------------~~iSA~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 145 PEAEP----------------------RMLSALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp TTSEE----------------------EECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred CcCcE----------------------EEEeCCCCCCHHHHHHHHHHhcccCC
Confidence 22121 14556677889999999988776543
No 114
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.39 E-value=3e-07 Score=81.49 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=47.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++|+|+|.+|||||||+|+|.+.... ....|+++.. ...+.++. .+.|+||||....... ....+.+++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~---~~~~~~~~d~ 78 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI---TTAYYRGAMG 78 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC---CHHHHTTEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh---HHHHhccCCE
Confidence 478999999999999999999987642 2333444433 33344443 5789999996543221 2234566665
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 79 ~i~v~d~ 85 (170)
T 1g16_A 79 IILVYDI 85 (170)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5544443
No 115
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.39 E-value=3.7e-07 Score=81.80 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=51.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~----~~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|.......+.++ ..+.|+||||..... ......+++++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~---~~~~~~~~~~d 81 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG---KMLDKYIYGAQ 81 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC---TTHHHHHTTCS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc---chhhHHHhhCC
Confidence 4689999999999999999999987642 122333333333334443 368999999965432 22334566666
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 82 ~~i~v~d~ 89 (178)
T 2hxs_A 82 GVLLVYDI 89 (178)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 66555443
No 116
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.38 E-value=3e-07 Score=84.37 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=44.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~ 320 (484)
+.++|+++|.||||||||+|+|.+.....+.++.|.+.. .+.+ +..+.++||||....
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~ 80 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQA 80 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHHH
Confidence 457999999999999999999998887667777777643 3333 347889999998654
No 117
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.37 E-value=2.2e-07 Score=98.47 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEK 339 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~ 339 (484)
..++|+|||.||||||||+|+|++.......++.|++... +.. +..+.|+||||...... .....+++++.+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~--~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVET--VTYKNVKFNVWDVGGQDKIRP---LWRHYYTGTQGLIF 395 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEE--EESSSCEEEEEEECCCGGGSG---GGGGGGTTCCEEEE
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEE--EEeCCEEEEEEECCCcHHHHH---HHHHHhccCCEEEE
Confidence 4689999999999999999999988865555555554432 222 35789999999654321 12234566776665
Q ss_pred cCCCchh-----HH----HHHhh---CCcchhhhhcCCCCC
Q 011507 340 LDDPVGP-----VK----EILNR---CPANLLISLYKLPSF 368 (484)
Q Consensus 340 l~d~~~~-----v~----~il~~---~~~~~l~~~~ki~~~ 368 (484)
+.|.... +. .++.. ...+.+++.||+|..
T Consensus 396 V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 436 (497)
T 3lvq_E 396 VVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLP 436 (497)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSS
T ss_pred EEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCC
Confidence 5554322 11 22222 234667778888753
No 118
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.37 E-value=5.2e-07 Score=80.67 Aligned_cols=78 Identities=18% Similarity=0.226 Sum_probs=49.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ....|.++.+. ..+.++. .+.|+||||...... .....+.+++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d 88 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS---LIPSYIRDST 88 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG---GSHHHHHTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHH---HHHHHhcCCC
Confidence 3589999999999999999999977643 23344444333 3344443 688999999643321 1223455555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 89 ~~i~v~d 95 (179)
T 2y8e_A 89 VAVVVYD 95 (179)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544443
No 119
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.37 E-value=4.5e-07 Score=81.49 Aligned_cols=73 Identities=19% Similarity=0.138 Sum_probs=49.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
..++|+|+|.+|||||||+|+|.+.......++.|.+. ...+.++. .+.|+||||... ...+++++.+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~--------~~~~~~~d~~ 76 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD--------AKFSGWADAV 76 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC--------HHHHHHCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE-EEEEEECCEEEEEEEEECCCCch--------hHHHHhCCEE
Confidence 46899999999999999999999887654444444332 23334433 578899999653 2355666665
Q ss_pred cccCC
Q 011507 338 EKLDD 342 (484)
Q Consensus 338 ~~l~d 342 (484)
..+.|
T Consensus 77 ilv~D 81 (178)
T 2iwr_A 77 IFVFS 81 (178)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54444
No 120
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.36 E-value=2.6e-07 Score=85.48 Aligned_cols=57 Identities=25% Similarity=0.308 Sum_probs=38.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeC-CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD-KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~-~~i~liDTPGi~~ 319 (484)
+.++|+++|.+|||||||+|+|.+.......++.|.+.. .+.++ ..+.++||||...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~ 81 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQ 81 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC---
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHh
Confidence 467999999999999999999998877666666776643 33333 4788999999654
No 121
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.36 E-value=5.6e-07 Score=82.89 Aligned_cols=79 Identities=20% Similarity=0.190 Sum_probs=49.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCe--eeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGL--TRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~--Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+.... ....|.+ +.....+.++. .+.|+||||........ ...+++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d 82 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLG---VAFYRGAD 82 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSC---CGGGTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhH---HHHHhCCc
Confidence 4689999999999999999999987643 2223333 33333444443 68899999975432211 12345555
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 83 ~~i~v~d~ 90 (207)
T 1vg8_A 83 CCVLVFDV 90 (207)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55544443
No 122
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=3.6e-07 Score=81.04 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=45.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
.++|+|+|.+|||||||+|+|.+.... .....+++++.. +..+ ..+.|+||||.... .......+.+++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~Dt~G~~~~---~~~~~~~~~~~~~ 77 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSHQF---PAMQRLSISKGHA 77 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--EEETTEEEEEEEEECCSCSSC---HHHHHHHHHHCSE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--EEECCEEEEEEEEECCCchhh---HHHHHHhcccCCE
Confidence 578999999999999999999986532 122222233222 2222 25789999996532 1222334555555
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 78 ~i~v~d 83 (172)
T 2erx_A 78 FILVYS 83 (172)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444433
No 123
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.35 E-value=4.2e-07 Score=80.32 Aligned_cols=75 Identities=17% Similarity=0.248 Sum_probs=46.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhccccccccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~ 341 (484)
++|+|+|.+|||||||+|+|.+.......++.|.+. ..+.. +..+.|+||||..... ......+.+++.+..+.
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~---~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIR---PLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCE--EEEECSSCEEEEEECCCCGGGH---HHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeE--EEEEECCEEEEEEEcCCChhhH---HHHHHHhccCCEEEEEE
Confidence 479999999999999999999776543333333221 22222 3578999999984321 11223455555554443
Q ss_pred C
Q 011507 342 D 342 (484)
Q Consensus 342 d 342 (484)
|
T Consensus 76 d 76 (164)
T 1r8s_A 76 D 76 (164)
T ss_dssp E
T ss_pred E
Confidence 3
No 124
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.34 E-value=7.1e-07 Score=80.36 Aligned_cols=77 Identities=19% Similarity=0.113 Sum_probs=48.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... ....+++|.... .+.++. .+.|+||||.... .......+.+++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~~~~~~~~~d 91 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY---AAIRDNYFRSGE 91 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC---HHHHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCccc---HHHHHHHhccCC
Confidence 458999999999999999999998764 233334433322 233443 5889999996432 122233455565
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 92 ~~i~v~d 98 (187)
T 2a9k_A 92 GFLCVFS 98 (187)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544443
No 125
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.33 E-value=5.2e-07 Score=82.44 Aligned_cols=80 Identities=21% Similarity=0.200 Sum_probs=51.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+...... .++.|++.....+.++. .+.|+||||....... ....+++++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ 96 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI---TRSYYRGAAG 96 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCC---CHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhh---HHHHhccCCE
Confidence 468999999999999999999998765432 23335455445555554 6889999996543221 2234566665
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 97 ii~v~d~ 103 (191)
T 2a5j_A 97 ALLVYDI 103 (191)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5555443
No 126
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.32 E-value=7.4e-07 Score=81.01 Aligned_cols=56 Identities=25% Similarity=0.297 Sum_probs=38.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.... ...+++|.... .+.++. .+.|+||||..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 80 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQE 80 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC--
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChH
Confidence 3589999999999999999999987642 33344443322 233333 48899999964
No 127
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.32 E-value=3.3e-07 Score=98.07 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=75.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-----e----------e------cCCCCeeeeeEEEEe---CCcEEEEecCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----N----------V------GATPGLTRSMQEVQL---DKNVKLLDCPG 316 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-----~----------v------~~~pg~Tr~~~~~~l---~~~i~liDTPG 316 (484)
...+|+|||.+|||||||+|+|+....+ . + ...+|+|.....+.+ +..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 3578999999999999999999622110 0 1 112455554433332 45789999999
Q ss_pred CccCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 317 VVMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 317 i~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.... .......++.++.+..+.|.... +...+.....+.+...||+|... +..+.+..+....|
T Consensus 92 ~~df---~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~ 163 (528)
T 3tr5_A 92 HADF---TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILR 163 (528)
T ss_dssp STTC---CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred chhH---HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhC
Confidence 8643 24556677888877766665431 12233444557788889998653 44555666655554
No 128
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.31 E-value=5.8e-07 Score=82.00 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=49.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEe-CCcEEEEecCCCccCCCCChHHHHHHhcccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRIE 338 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~ 338 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|.+.. .+.. +..+.|+||||...... .....+++++.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~ii 95 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRS---MWERYCRGVSAIV 95 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHT---THHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHH---HHHHHHccCCEEE
Confidence 5689999999999999999999987653 23444454432 2222 44789999999643211 1223445565554
Q ss_pred ccCC
Q 011507 339 KLDD 342 (484)
Q Consensus 339 ~l~d 342 (484)
.+.|
T Consensus 96 ~v~D 99 (188)
T 1zd9_A 96 YMVD 99 (188)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
No 129
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.31 E-value=7e-07 Score=80.66 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=41.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+..... ...|.++.. ...+.++. .+.|+||||..
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 70 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcH
Confidence 45899999999999999999999876432 233444433 33344544 68899999964
No 130
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.30 E-value=4.8e-07 Score=81.12 Aligned_cols=58 Identities=26% Similarity=0.334 Sum_probs=37.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC----CcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD----KNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~----~~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|.+.....+.++ ..+.|+||||..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 69 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 69 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC---
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh
Confidence 4689999999999999999999987642 222333333333444443 257899999953
No 131
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.29 E-value=4.2e-07 Score=82.64 Aligned_cols=81 Identities=15% Similarity=0.150 Sum_probs=51.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecC-------CCCeeeeeEEE-----EeC---CcEEEEecCCCccCCCCCh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGA-------TPGLTRSMQEV-----QLD---KNVKLLDCPGVVMLKSGEN 325 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~-------~pg~Tr~~~~~-----~l~---~~i~liDTPGi~~~~~~~~ 325 (484)
..++|+|+|.+|||||||+|.|.+.......+ ....|...... .++ ..+.|+||||.... ..
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~ 89 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY---NA 89 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC---SH
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH---HH
Confidence 46899999999999999999998865432211 01223322221 122 25789999996532 23
Q ss_pred HHHHHHhccccccccCCCc
Q 011507 326 DASIALRNCKRIEKLDDPV 344 (484)
Q Consensus 326 ~~~~~L~~~~~i~~l~d~~ 344 (484)
.....+++++.+..+.|..
T Consensus 90 ~~~~~~~~~d~~i~v~D~~ 108 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSA 108 (198)
T ss_dssp HHHHHTTTCCEEEEEEECC
T ss_pred HHHHHHhcCCEEEEEEECC
Confidence 3345677777777666654
No 132
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.28 E-value=2.1e-06 Score=80.19 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHH----Hhc-----CCeEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYL----REE-----LPAVAF 210 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l----~~~-----~p~v~f 210 (484)
......+|+||+|+|+++++......+.+.+.. .+.|+|+|+||+||++...+..+...+ ... .....+
T Consensus 110 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 187 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV 187 (223)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred HhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence 333444899999999999877555556566544 368999999999999877654444433 322 122222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
..+|+.++.|++.|++.|.++.+.
T Consensus 188 ----------------------~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 188 ----------------------QLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp ----------------------EEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred ----------------------EEeecCCCcCHHHHHHHHHHhcCc
Confidence 135567788999999999887654
No 133
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.28 E-value=8.5e-07 Score=97.96 Aligned_cols=120 Identities=13% Similarity=0.160 Sum_probs=73.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-----ee------cC------CCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-----NV------GA------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-----~v------~~------~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
...+|+|+|.+|+|||||+|+|+..... .| .+ .+|+|.......+ +..+.|+||||....
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 4578999999999999999999852111 11 11 3566665443332 457999999999753
Q ss_pred CCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 321 KSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.......++.++.+..+.|.... +...+.....+.+...||+|... +.++.+..+....+
T Consensus 89 ---~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~ 156 (693)
T 2xex_A 89 ---TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQ 156 (693)
T ss_dssp ---CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhC
Confidence 34566678888877766665331 11223444556778889998754 35555665555443
No 134
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.28 E-value=1.1e-06 Score=79.42 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=49.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeee-eEEEEeC------------CcEEEEecCCCccCCCCChH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRS-MQEVQLD------------KNVKLLDCPGVVMLKSGEND 326 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~-~~~~~l~------------~~i~liDTPGi~~~~~~~~~ 326 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|.+.. ...+..+ ..+.|+||||.... ...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---~~~ 86 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF---RSL 86 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG---HHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH---HHH
Confidence 4689999999999999999999986642 12233343332 2233332 26889999997432 112
Q ss_pred HHHHHhccccccccCCC
Q 011507 327 ASIALRNCKRIEKLDDP 343 (484)
Q Consensus 327 ~~~~L~~~~~i~~l~d~ 343 (484)
....+.+++.+..+.|.
T Consensus 87 ~~~~~~~~d~~i~v~d~ 103 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDL 103 (195)
T ss_dssp HHHTTTTCSEEEEEEET
T ss_pred HHHHHcCCCEEEEEEEC
Confidence 23345566655555443
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.28 E-value=1e-06 Score=82.06 Aligned_cols=56 Identities=29% Similarity=0.331 Sum_probs=40.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee--cCCCCeeeeeEEEEeCCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV--GATPGLTRSMQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v--~~~pg~Tr~~~~~~l~~~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+...... +..|+++... ....+.|+||||....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~ 68 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKL 68 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHH
Confidence 468999999999999999999998764222 3334444322 2457899999998644
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.27 E-value=5.5e-07 Score=95.36 Aligned_cols=107 Identities=21% Similarity=0.251 Sum_probs=66.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCcc------------------------------ceecCCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHV------------------------------ANVGATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~------------------------------~~v~~~pg~Tr~~~~~~l---~ 306 (484)
+..++|+++|.+|+|||||+|+|++... ......+|+|.+.....+ +
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 3568999999999999999999975511 112334688877665443 3
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCch-----------hHH---HHHhhCC-cchhhhhcCCCCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG-----------PVK---EILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~-----------~v~---~il~~~~-~~~l~~~~ki~~~~ 369 (484)
..+.|+||||.... .......+..++.+..+.|... ... .++.... ++.+...||+|...
T Consensus 111 ~~~~iiDTPG~~~f---~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 111 ANFTIVDAPGHRDF---VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp CEEEEECCCCCGGG---HHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred ceEEEEECCCcHHH---HHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 57999999998532 1233445667776665555432 111 2233333 34677789988643
No 137
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.2e-06 Score=81.33 Aligned_cols=58 Identities=22% Similarity=0.381 Sum_probs=40.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|++.....+.++. .+.|+||||..
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~ 86 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcH
Confidence 4689999999999999999999987642 1222233333333444543 68899999963
No 138
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.26 E-value=1.3e-06 Score=78.16 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=49.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... +...+++|.... .+.++. .+.|+||||...... .....+.+++
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~---~~~~~~~~~d 82 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA---MREQYMRAGH 82 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC---CHHHHHHHCS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH---HHHHHHhhCC
Confidence 468999999999999999999998753 344555554332 233442 578999999654321 1223445555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 83 ~~i~v~d 89 (181)
T 2fn4_A 83 GFLLVFA 89 (181)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 5444433
No 139
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.26 E-value=9.2e-07 Score=82.20 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=51.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEeC----CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQLD----KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l~----~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+... ....+.++.....+.++ ..+.|+||||...... ......+++++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~~ 81 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF--QLLDRFKSSARA 81 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHH--HHHHHHGGGEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEEEEecCCCccEEEEEECCCChhHHH--HHHHHHHhhCCE
Confidence 458999999999999999999998763 33345555444445554 3589999999753210 012223566766
Q ss_pred ccccCCCc
Q 011507 337 IEKLDDPV 344 (484)
Q Consensus 337 i~~l~d~~ 344 (484)
+..+.|..
T Consensus 82 ~i~v~d~~ 89 (214)
T 2fh5_B 82 VVFVVDSA 89 (214)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 66555543
No 140
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.25 E-value=1.5e-06 Score=87.45 Aligned_cols=102 Identities=19% Similarity=0.215 Sum_probs=59.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEe-CCcEEEEecCCCccCCCCChHHHHHHhccccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQL-DKNVKLLDCPGVVMLKSGENDASIALRNCKRI 337 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l-~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i 337 (484)
..++|+|+|.+|||||||+|+|.+....... | |..... +.. +..+.|+||||-.... ......+++++.+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~~~~~~~ad~v 236 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI--P--TIGFNVETVEYKNISFTVWDVGGQDKIR---PLWRHYFQNTQGL 236 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--E--ETTEEEEEEEETTEEEEEEECC-----C---CSHHHHHTTEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc--c--ccceEEEEEecCcEEEEEEECCCCHhHH---HHHHHHhccCCEE
Confidence 4689999999999999999999988754332 3 333222 222 3468999999943321 2233456667666
Q ss_pred cccCCCch-----hHH----HHHhhC---CcchhhhhcCCCCCC
Q 011507 338 EKLDDPVG-----PVK----EILNRC---PANLLISLYKLPSFD 369 (484)
Q Consensus 338 ~~l~d~~~-----~v~----~il~~~---~~~~l~~~~ki~~~~ 369 (484)
..+.|... .+. .++... ..+.+.+.||+|...
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~ 280 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 280 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCc
Confidence 55544321 222 222222 345677778887543
No 141
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.25 E-value=9.6e-07 Score=81.54 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=45.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCee--eeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T--r~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||||+|.+..... ...|.++ .....+.++. .+.|+||||....... ....+++++
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~---~~~~~~~~d 99 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV---TRSYYRGAA 99 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC---CHHHHTTCS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH---HHHHhccCC
Confidence 46899999999999999999999876432 2223333 3333444443 6899999996432211 123456666
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 100 ~~i~v~d~ 107 (200)
T 2o52_A 100 GALLVYDI 107 (200)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55544443
No 142
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.24 E-value=1.4e-06 Score=79.59 Aligned_cols=78 Identities=21% Similarity=0.186 Sum_probs=47.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.+.+.. ..+..+. .+.|+||||..... ......+.+++.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~---~~~~~~~~~~d~ 82 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFP---AMQRLSISKGHA 82 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCH---HHHHHHHHHCSE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhH---HHHHHhhccCCE
Confidence 46899999999999999999999865421 1122222221 1222332 58899999965321 222344566665
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 83 ~i~v~d 88 (199)
T 2gf0_A 83 FILVFS 88 (199)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554444
No 143
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.24 E-value=3.5e-07 Score=99.25 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=31.3
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceec------------------------------CCCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVG------------------------------ATPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~------------------------------~~pg~Tr~~~~~~l---~ 306 (484)
+..++|+|||.+|+|||||+|+|++...+.+. ..+|+|.+.....+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 35689999999999999999999753221111 15788888765543 3
Q ss_pred CcEEEEecCCCcc
Q 011507 307 KNVKLLDCPGVVM 319 (484)
Q Consensus 307 ~~i~liDTPGi~~ 319 (484)
..+.|+||||...
T Consensus 255 ~~i~iiDTPGh~~ 267 (592)
T 3mca_A 255 KIYEIGDAPGHRD 267 (592)
T ss_dssp ----CCEEESSSE
T ss_pred eEEEEEECCChHH
Confidence 5789999999753
No 144
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.55 E-value=1.5e-07 Score=87.13 Aligned_cols=57 Identities=26% Similarity=0.234 Sum_probs=38.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC---CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~---~~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+... ......+|..... +.++ -.+.|+||||...
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 90 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQED 90 (204)
Confidence 468999999999999999999997653 2233333332221 1222 2456999999753
No 145
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.2e-06 Score=82.32 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=49.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+...... .++.|++.....+.++. .+.|+||||....... ....+++++.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~d~ 88 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI---TSAYYRGAVG 88 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC---CGGGTTTCCE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh---HHHHhccCCE
Confidence 358999999999999999999998765322 23334333334455554 6899999996543221 1123455555
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 89 vilV~D~ 95 (223)
T 3cpj_B 89 ALIVYDI 95 (223)
T ss_dssp EEEEEC-
T ss_pred EEEEEeC
Confidence 5555444
No 146
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.22 E-value=1.3e-06 Score=77.58 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCC-eeeeeEEEEeCC---cEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPG-LTRSMQEVQLDK---NVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg-~Tr~~~~~~l~~---~i~liDTPGi~~~ 320 (484)
.++|+|+|.||||||||+|+|.+.........+. .......+.++. .+.++||||....
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~ 64 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDA 64 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC---
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCcccc
Confidence 3689999999999999999998765433332222 111222233433 5779999998643
No 147
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.21 E-value=5.2e-07 Score=82.93 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=19.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeee---eeEEEEeCC-----cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTR---SMQEVQLDK-----NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr---~~~~~~l~~-----~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+.....++..++|+. ....+.++. .+.|+||||..
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~ 84 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSD 84 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcH
Confidence 46899999999999999999999873222333334432 223344443 58999999984
No 148
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.21 E-value=1.7e-06 Score=80.79 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=38.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+..... ...+++.. ...+.++. .+.|+||||...... .....+.+++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~---~~~~~~~~~d 107 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDR---LRPLFYPDAS 107 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC------------------CEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhH---HHHHHhccCC
Confidence 46899999999999999999999876422 22223222 22234443 588999999643211 1122345555
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 108 ~~i~v~d~ 115 (214)
T 2j1l_A 108 VLLLCFDV 115 (214)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55444443
No 149
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=4.8e-07 Score=82.68 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=51.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeC---CcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLD---KNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+.... ...++.|++.....+..+ ..+.|+||||.... .......+++++.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~---~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY---RTITTAYYRGAMG 98 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC---HHHHHHHHTTCCE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH---HHHHHHHHccCCE
Confidence 5689999999999999999999986532 233444656555555543 25889999995322 1122334556655
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 99 ~i~v~d 104 (191)
T 3dz8_A 99 FILMYD 104 (191)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 544443
No 150
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.21 E-value=1.5e-06 Score=80.60 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=37.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeCC---cEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~~---~i~liDTPGi~~~ 320 (484)
.++|+|+|.+|||||||+|+|.+...... ..|.++... ..+.++. .+.|+||||....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 86 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDY 86 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHH
Confidence 57999999999999999999998765322 112222221 2234443 5789999997543
No 151
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.20 E-value=1.4e-06 Score=80.63 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=47.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|.+.....+.++. .+.|+||||.... .......+++++.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---~~~~~~~~~~~d~ 104 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF---RTITQSYYRSANG 104 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG---HHHHHHHHTTCSE
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH---HHHHHHHHhhCCE
Confidence 46899999999999999999999876421 112222222233344443 6889999996432 1123345566666
Q ss_pred ccccCCC
Q 011507 337 IEKLDDP 343 (484)
Q Consensus 337 i~~l~d~ 343 (484)
+..+.|.
T Consensus 105 iilv~D~ 111 (201)
T 2hup_A 105 AILAYDI 111 (201)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5555443
No 152
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.20 E-value=1.9e-06 Score=79.88 Aligned_cols=58 Identities=28% Similarity=0.277 Sum_probs=40.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC-C--cEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD-K--NVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~-~--~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+... ++..+++|..... +.++ . .+.|+||||....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDY 91 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhh
Confidence 468999999999999999999997653 3444555544333 2232 2 3559999998543
No 153
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.17 E-value=2.6e-07 Score=98.76 Aligned_cols=57 Identities=26% Similarity=0.524 Sum_probs=46.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~ 318 (484)
++.+|+|+|.+|+|||||+|+|++.... ....||+|.+.....+ +..+.|+||||..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe 63 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHA 63 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChH
Confidence 4678999999999999999999988764 3467899988665433 3479999999964
No 154
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.17 E-value=2.5e-06 Score=76.78 Aligned_cols=58 Identities=26% Similarity=0.249 Sum_probs=38.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~ 320 (484)
..++|+|+|.+|||||||+|+|.+.... .....++.... .+.++. .+.|+||||....
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 66 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEEECCEEEEEEEEECCCCHhH
Confidence 3589999999999999999999976532 22223332211 223332 4679999998543
No 155
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.16 E-value=2.1e-06 Score=78.77 Aligned_cols=77 Identities=17% Similarity=0.107 Sum_probs=45.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... +...++||..... +.++. .+.|+||||....... ....+.+++
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~---~~~~~~~~~ 93 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL---RPLCYTNTD 93 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS---GGGGGTTCS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH---hHhhcCCCc
Confidence 568999999999999999999998763 3444455543322 33343 4679999998543221 112445555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 94 ~~i~v~d 100 (201)
T 2q3h_A 94 IFLLCFS 100 (201)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5554444
No 156
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.16 E-value=2e-06 Score=79.31 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=40.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee-EEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM-QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~-~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+..... ...|.++... ..+.++. .+.|+||||...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~ 85 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQED 85 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCchh
Confidence 35899999999999999999999876432 2223333222 2234443 678999999643
No 157
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.16 E-value=1.8e-06 Score=87.64 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=23.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN 289 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~ 289 (484)
.+|+|||.+|||||||+|+|.|.....
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp 61 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLP 61 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCC
Confidence 489999999999999999999976533
No 158
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.14 E-value=8.4e-07 Score=80.02 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=24.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+... .....|+++.+. ..+.++. .+.|+||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 69 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 69 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChh
Confidence 358999999999999999999997653 223334444433 2344443 688999999643
No 159
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.14 E-value=3.3e-06 Score=77.10 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=38.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|+|.+|||||||+|+|.+... .....+++.... .+.++. .+.|+||||..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 82 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQE 82 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcH
Confidence 468999999999999999999998764 222223322211 223332 46899999954
No 160
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.14 E-value=2.5e-06 Score=78.29 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=48.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe----CCcEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL----DKNVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l----~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
..++|+|+|.+|||||||+|.|.+..........+.|.......+ ...+.|+||||..............+++++.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGA 98 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCE
Confidence 568999999999999999999998643221111122222222222 2468999999965432211101345666666
Q ss_pred ccccCC
Q 011507 337 IEKLDD 342 (484)
Q Consensus 337 i~~l~d 342 (484)
+..+.|
T Consensus 99 ~i~v~d 104 (196)
T 3llu_A 99 LIYVID 104 (196)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 554444
No 161
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.13 E-value=1.5e-06 Score=79.94 Aligned_cols=58 Identities=26% Similarity=0.181 Sum_probs=36.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~~ 319 (484)
.++|+|||.||||||||+|.+.+.....++..++++.+ ...+.++. .+.++||+|...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~ 68 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKG 68 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcc
Confidence 57899999999999999999997543333333333222 23344443 457899999653
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.13 E-value=8.9e-07 Score=96.36 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=65.1
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecC------------------------------CCCeeeeeEEEEe---C
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGA------------------------------TPGLTRSMQEVQL---D 306 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~------------------------------~pg~Tr~~~~~~l---~ 306 (484)
+..++|++||.||||||||+|+|++........ .+|+|.+.....+ +
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764321111 2688887654433 4
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-----------HH---HHHhhCC-cchhhhhcCCCCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------VK---EILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-----------v~---~il~~~~-~~~l~~~~ki~~~~ 369 (484)
..+.|+||||.... .......+..++.+..+.|.... .. .++.... ++.+.+.||+|...
T Consensus 245 ~~~~iiDTPG~e~f---~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 245 ANFTIVDAPGHRDF---VPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CEEEEEECCSSSCH---HHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred ceEEEEECCCCccc---HHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 57999999997431 01111223455555555554321 11 1233333 34666789988654
No 163
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.11 E-value=1.6e-06 Score=90.63 Aligned_cols=61 Identities=25% Similarity=0.250 Sum_probs=40.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC---------------ccceecCCCC---eeeeeEEEE------e----CCcEEEE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC---------------HVANVGATPG---LTRSMQEVQ------L----DKNVKLL 312 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~---------------~~~~v~~~pg---~Tr~~~~~~------l----~~~i~li 312 (484)
+...|+|+|.||+|||||+|.|.+. +....+..|+ +|+.+-... . +..++|+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvll 145 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLM 145 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEE
Confidence 4578999999999999999999975 3333332222 233322111 0 1369999
Q ss_pred ecCCCccCC
Q 011507 313 DCPGVVMLK 321 (484)
Q Consensus 313 DTPGi~~~~ 321 (484)
||||+..+.
T Consensus 146 DTeG~~~~~ 154 (447)
T 3q5d_A 146 DTQGTFDSQ 154 (447)
T ss_dssp EEECCCSSH
T ss_pred cCCcccccc
Confidence 999998764
No 164
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.11 E-value=4.2e-06 Score=76.33 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=43.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... ...++.|+... ..+.++. .+.|+||||...... ....+++++
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~~~~~~~ 93 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN----CERYLNWAH 93 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC----THHHHTTCS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh----HHHHHhhCC
Confidence 468999999999999999999998763 23333333322 2233332 577899999764432 123455555
Q ss_pred ccc
Q 011507 336 RIE 338 (484)
Q Consensus 336 ~i~ 338 (484)
.+.
T Consensus 94 ~~i 96 (187)
T 3c5c_A 94 AFL 96 (187)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 165
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.11 E-value=4.2e-06 Score=75.82 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=38.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+..... ..++.|.+.. ..+.++. .+.|+||||...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~ 67 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 67 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChh
Confidence 46899999999999999999999875421 1222222221 1233332 578999999753
No 166
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.10 E-value=6.5e-07 Score=82.43 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=40.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCee--eeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLT--RSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~T--r~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||||+|.+.... ....|++| .....+.++. .+.|+||||...
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 94 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 94 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTT
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEECCEEEEEEEEECCCcHh
Confidence 4689999999999999999999987642 22223333 3334444443 588999999643
No 167
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.10 E-value=4.5e-06 Score=89.33 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=70.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc---------------eec------CCCCeeeeeEEEE--e-CCcEEEEecCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA---------------NVG------ATPGLTRSMQEVQ--L-DKNVKLLDCPG 316 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~---------------~v~------~~pg~Tr~~~~~~--l-~~~i~liDTPG 316 (484)
...+|+|+|.+|+|||||+|+|+..... .+. ..+|+|....... . +..+.|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4589999999999999999999864211 011 1345554332222 2 35789999999
Q ss_pred CccCCCCChHHHHHHhccccccccCCCchh----HHHHHh---hCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 317 VVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEILN---RCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 317 i~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il~---~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.... .......++.++.+..+.|.... ...++. ....+.+...||+|... +..+.+..+....+
T Consensus 92 ~~df---~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~ 163 (529)
T 2h5e_A 92 HEDF---SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELK 163 (529)
T ss_dssp STTC---CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHC
T ss_pred ChhH---HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhC
Confidence 8543 23455567778777666554331 223333 23445677889998653 44455555555443
No 168
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.10 E-value=1.7e-06 Score=79.81 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=39.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--EEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--QEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|||.||||||||+|+|.+... .....|++|.+. ..+.++. .+.++||||...
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGD 84 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSG
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCcc
Confidence 468999999999999999999986542 123345444332 2233443 467889999853
No 169
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.09 E-value=5.7e-06 Score=74.94 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=62.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEccc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCST 214 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~~~~ 214 (484)
...+....+|+|+.|+|+.++.......+.+.+... +.|+|+|+||+||.+.+........++..+ ....+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---- 170 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI---- 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE----
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce----
Confidence 333334455999999999988766555666666553 689999999999997665544444333321 11111
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...|+.++.|++.|++.|.+...
T Consensus 171 ------------------~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 171 ------------------IPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp ------------------EECCTTTCTTHHHHHHHHHHHHC
T ss_pred ------------------EEEecCCCCCHHHHHHHHHHHhh
Confidence 13456778899999998877654
No 170
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.09 E-value=2.3e-06 Score=88.75 Aligned_cols=108 Identities=24% Similarity=0.333 Sum_probs=68.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC--CcEEEEecCCCccCCCC----ChHHHHHHh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD--KNVKLLDCPGVVMLKSG----ENDASIALR 332 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~--~~i~liDTPGi~~~~~~----~~~~~~~L~ 332 (484)
..-.|+|||.||||||||||+|.+... .+++.|++|..... +.++ ..+.++||||++..... .......+.
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e 234 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIA 234 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence 345699999999999999999999875 67889999877654 3333 56899999999753211 122223344
Q ss_pred ccccccccCCCc-hhH---HH----HHhh----CCcchhhhhcCCCCCC
Q 011507 333 NCKRIEKLDDPV-GPV---KE----ILNR----CPANLLISLYKLPSFD 369 (484)
Q Consensus 333 ~~~~i~~l~d~~-~~v---~~----il~~----~~~~~l~~~~ki~~~~ 369 (484)
.|+.+.++.|.. .++ .. +... ...+.+++++++|...
T Consensus 235 ra~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 235 RTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp SSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 455554444431 222 11 1111 2345666778887653
No 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.07 E-value=2.3e-06 Score=79.60 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=47.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeC-------------CcEEEEecCCCccCCCCCh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLD-------------KNVKLLDCPGVVMLKSGEN 325 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~-------------~~i~liDTPGi~~~~~~~~ 325 (484)
..++|+|+|.+|||||||||+|.+.... ....|.++.+ ...+.++ ..+.|+||||.... ..
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~---~~ 99 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF---RS 99 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH---HH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH---Hh
Confidence 4689999999999999999999987542 1111211111 1122222 35899999995321 11
Q ss_pred HHHHHHhccccccccCCC
Q 011507 326 DASIALRNCKRIEKLDDP 343 (484)
Q Consensus 326 ~~~~~L~~~~~i~~l~d~ 343 (484)
.....+++++.+..+.|.
T Consensus 100 ~~~~~~~~~d~iilV~D~ 117 (217)
T 2f7s_A 100 LTTAFFRDAMGFLLMFDL 117 (217)
T ss_dssp HHHHHHTTCCEEEEEEET
T ss_pred HHHHHhcCCCEEEEEEEC
Confidence 223456677766655554
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.05 E-value=4.5e-06 Score=85.33 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=59.4
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCCCChHHHHHHhcccccccc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKL 340 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l 340 (484)
+|+++|.+|+|||||+|+|+ .+|+|.+.....+ +..+.|+||||.... .......++.++.+..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f---~~~~~~~~~~aD~ailV 90 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT---LKSLITALNISDIAVLC 90 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTC---HHHHHHHHHTCSEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHH---HHHHHHHHHHCCEEEEE
Confidence 89999999999999999999 3466666554443 457999999997532 12333455667666555
Q ss_pred CCCch----hHH---HHHhhCCcch-hhhhc-CCCC
Q 011507 341 DDPVG----PVK---EILNRCPANL-LISLY-KLPS 367 (484)
Q Consensus 341 ~d~~~----~v~---~il~~~~~~~-l~~~~-ki~~ 367 (484)
.| .. ... .++.....+. +...| |+|.
T Consensus 91 vd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 91 IP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp EC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred Ec-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 55 22 112 2333444444 66677 8886
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.04 E-value=5.2e-06 Score=84.27 Aligned_cols=38 Identities=39% Similarity=0.618 Sum_probs=26.5
Q ss_pred cceEEEEecCCCCchhHHHHHhh------cCccceecCCCCeee
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGLTR 298 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~------~~~~~~v~~~pg~Tr 298 (484)
....|+|+|.||||||||+|.|. +.+++.+..-|+.|.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~ 121 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR 121 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc
Confidence 46789999999999999999996 445555555554443
No 174
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.04 E-value=6e-06 Score=86.10 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=59.6
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCcc----------ceecCCCCee----------------------eeeEEEEe--
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHV----------ANVGATPGLT----------------------RSMQEVQL-- 305 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~----------~~v~~~pg~T----------------------r~~~~~~l-- 305 (484)
+..++|+++|.+|+|||||+|+|++... ..++..+|+| .+.....+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4468999999999999999999986531 1223344444 33222221
Q ss_pred -CCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCch---h-HH---HHHhhCCc-chhhhhcCCCCCC
Q 011507 306 -DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVG---P-VK---EILNRCPA-NLLISLYKLPSFD 369 (484)
Q Consensus 306 -~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~---~-v~---~il~~~~~-~~l~~~~ki~~~~ 369 (484)
+..+.|+||||...- .......+..++.+..+.|... + .. .++..... +.+...||+|...
T Consensus 102 ~~~~~~iiDtpGh~~f---~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 102 AKRKFIIADTPGHEQY---TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp SSEEEEEEECCCSGGG---HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred CCceEEEEECCChHHH---HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCc
Confidence 346899999996432 1223334566766655554322 1 11 22333332 4677789998654
No 175
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.04 E-value=2e-06 Score=77.23 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=33.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeC---CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~---~~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+... ....++++..... +.++ -.+.|+||||...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~ 68 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED 68 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CT
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh
Confidence 468999999999999999999997763 2233333332111 1122 2466999999753
No 176
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.04 E-value=5.5e-06 Score=89.77 Aligned_cols=126 Identities=19% Similarity=0.193 Sum_probs=84.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH---HHHHHHHHHHHhcCCeEEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR---ESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~---e~~~~wl~~l~~~~p~v~f~ 211 (484)
|..++...+..+|.+|+|+||.++.............. .+.|+|+|+||+||.+. +....|...+. ++.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg--~~~---- 155 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--MDLEVVPVLNKIDLPAADPERVAEEIEDIVG--IDA---- 155 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--TTCEEEEEEECTTSTTCCHHHHHHHHHHHTC--CCC----
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--CCCCEEEeeeccCcccccHHHHHHHHHHHhC--CCc----
Confidence 66678888999999999999998765433222222222 46899999999999863 23344444331 110
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc--ccccceEEEEecC---CCCchhHHHHHhhcCc
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--EIKKSITVGVIGL---PNVGKSSLINSLKRCH 286 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~--~~~~~~~V~vvG~---pNvGKSSLIN~L~~~~ 286 (484)
......|+.++.|++.|++.|.++.+.. ....++...|++. |++|+.++++-+.|.-
T Consensus 156 ------------------~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 156 ------------------TDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp ------------------TTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred ------------------ceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 0112455677889999999998887643 2234556566665 9999999998887763
No 177
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.03 E-value=1.5e-06 Score=94.24 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=41.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccce--------e------cCCCCeeeeeEEEEe--------CCcEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVAN--------V------GATPGLTRSMQEVQL--------DKNVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~--------v------~~~pg~Tr~~~~~~l--------~~~i~liDTPGi~~ 319 (484)
-.+|+|+|.+|+|||||+++|+...... + ....|+|.....+.+ +..+.|+||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 3689999999999999999998632110 1 113567765444332 13688999999864
Q ss_pred CCCCChHHHHHHhccccccccCCC
Q 011507 320 LKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 320 ~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
.. ......++.|+.+..+.|.
T Consensus 84 F~---~ev~~~l~~aD~aILVVDa 104 (599)
T 3cb4_D 84 FS---YEVSRSLAACEGALLVVDA 104 (599)
T ss_dssp GH---HHHHHHHHHCSEEEEEEET
T ss_pred HH---HHHHHHHHHCCEEEEEEEC
Confidence 32 2344567777766555443
No 178
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.03 E-value=3.1e-06 Score=79.55 Aligned_cols=58 Identities=26% Similarity=0.219 Sum_probs=38.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeee--eEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRS--MQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~--~~~~~l~~---~i~liDTPGi~ 318 (484)
..++|+|||.||||||||+|++.+.....+...|.++.+ ...+.++. .+.++||+|..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~ 98 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc
Confidence 458999999999999999999997554333333333222 23344443 45789999853
No 179
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.03 E-value=1.7e-06 Score=91.62 Aligned_cols=106 Identities=20% Similarity=0.226 Sum_probs=60.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc------ceecCCCCeeeeeEE--EEeC-CcEEEEecCCCccCCCCChHHHHHH
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV------ANVGATPGLTRSMQE--VQLD-KNVKLLDCPGVVMLKSGENDASIAL 331 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~------~~v~~~pg~Tr~~~~--~~l~-~~i~liDTPGi~~~~~~~~~~~~~L 331 (484)
..++|+++|.+|+|||||+|+|++... ......+|+|.+... +.++ ..+.|+||||.... .......+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~---~~~~~~~~ 94 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL---IRAVVSAA 94 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH---HHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH---HHHHHHHH
Confidence 358999999999999999999998761 234566788877543 3333 47999999997321 11222344
Q ss_pred hccccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCCC
Q 011507 332 RNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSFD 369 (484)
Q Consensus 332 ~~~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~~ 369 (484)
..++.+..+.|... + ...++.....+.+...||+|...
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred hhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 56666555554322 1 11234444555688889998654
No 180
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.03 E-value=1.7e-05 Score=81.90 Aligned_cols=118 Identities=15% Similarity=0.206 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCC-CCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCC-----
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGT-RCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELP----- 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~-r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p----- 206 (484)
..|.++....+..+|++|+|+||+++... ........+... +.+|+|+|+||+||++.+....+.+.+++.+.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 164 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE 164 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence 34777888888999999999999998632 122222233332 35789999999999998766655555544210
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc--ccccceEEEEecCCCC
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH--EIKKSITVGVIGLPNV 273 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~--~~~~~~~V~vvG~pNv 273 (484)
.++ ....|+..+.|.+.|++.|.++.+.. ....+++..|....++
T Consensus 165 ~~~----------------------ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v 211 (403)
T 3sjy_A 165 NVP----------------------IIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDV 211 (403)
T ss_dssp TCC----------------------EEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECC
T ss_pred CCE----------------------EEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEee
Confidence 111 12456678889999999999866532 2234555555543333
No 181
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.03 E-value=9.3e-07 Score=89.30 Aligned_cols=37 Identities=38% Similarity=0.644 Sum_probs=27.7
Q ss_pred ccceEEEEecCCCCchhHHHHHhh------cCccceecCCCCe
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGL 296 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~------~~~~~~v~~~pg~ 296 (484)
.....|+|+|.||+|||||+|.|. +.+++.++..|++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSS 95 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcc
Confidence 356789999999999999999998 3455444444433
No 182
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.03 E-value=7.7e-06 Score=74.49 Aligned_cols=56 Identities=23% Similarity=0.316 Sum_probs=38.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~ 318 (484)
+.++|+|+|.+|||||||+|+|.+..... ..++.+ .....+.++. .+.|+||||..
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~ 78 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPP 78 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCCh
Confidence 56899999999999999999999876432 222211 1112344433 46779999974
No 183
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.02 E-value=8e-06 Score=75.09 Aligned_cols=59 Identities=25% Similarity=0.348 Sum_probs=40.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~ 320 (484)
.++|+|+|.+|||||||+|.|.+...... .++.|++.....+.++. .+.++||||....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 67 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 67 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhh
Confidence 47899999999999999999998764322 23334433334455543 4678999997543
No 184
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.01 E-value=5.3e-06 Score=75.36 Aligned_cols=57 Identities=16% Similarity=0.361 Sum_probs=34.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecC-CCCeeeeeEEEEe--------CCcEEEEecCCCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA-TPGLTRSMQEVQL--------DKNVKLLDCPGVV 318 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~-~pg~Tr~~~~~~l--------~~~i~liDTPGi~ 318 (484)
.++|+|+|.+|||||||+|.|.+.....++. .|.++.+.....+ ...+.++||||..
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 67 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGRE 67 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCH
Confidence 3689999999999999999999853222222 2222223222211 2368899999974
No 185
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.00 E-value=3.7e-06 Score=84.93 Aligned_cols=101 Identities=20% Similarity=0.220 Sum_probs=60.3
Q ss_pred cceEEEEecCCCCchhHHHHHhh------cCccceecCCCCeeeee--E----------------EE-------------
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGATPGLTRSM--Q----------------EV------------- 303 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~------~~~~~~v~~~pg~Tr~~--~----------------~~------------- 303 (484)
....|+++|.||+|||||+|.|. +.+++.++.-|++|..- . .+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 56789999999999999999996 45566666666665420 0 00
Q ss_pred -----------EeCCcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhHHHHHhhC-----CcchhhhhcCCCC
Q 011507 304 -----------QLDKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPVKEILNRC-----PANLLISLYKLPS 367 (484)
Q Consensus 304 -----------~l~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v~~il~~~-----~~~~l~~~~ki~~ 367 (484)
.-+..+.|+||||+..+. ...+..++.+..+.|+..... +... ..+.+.++||+|.
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~------~~~~~~aD~vl~Vvd~~~~~~--~~~l~~~~~~~p~ivv~NK~Dl 206 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE------TEVARMVDCFISLQIAGGGDD--LQGIKKGLMEVADLIVINKDDG 206 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH------HHHHTTCSEEEEEECC--------CCCCHHHHHHCSEEEECCCCT
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH------HHHHHhCCEEEEEEeCCccHH--HHHHHHhhhcccCEEEEECCCC
Confidence 014579999999987531 224567777666666543211 1111 1235667788876
Q ss_pred CC
Q 011507 368 FD 369 (484)
Q Consensus 368 ~~ 369 (484)
..
T Consensus 207 ~~ 208 (341)
T 2p67_A 207 DN 208 (341)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 186
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.00 E-value=8e-06 Score=90.14 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=70.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc--c---ceecC------------CCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH--V---ANVGA------------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~--~---~~v~~------------~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
...+|+|+|.+|+|||||+|+|.... . ..+.. ..|+|.......+ +..+.|+||||....
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 45789999999999999999998421 0 11111 3456655443332 457899999998642
Q ss_pred CCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 321 KSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
.......++.++.+..+.|.... +...+.....+.+...||+|... +.++.+..+....+
T Consensus 91 ---~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~ 158 (691)
T 1dar_A 91 ---TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 158 (691)
T ss_dssp ---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhC
Confidence 23455677778777666654331 11223344556777889998653 45556555554433
No 187
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.00 E-value=8.6e-06 Score=75.70 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=38.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+...... .++.+.+.. ..+.++. .+.|+||||...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~ 88 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPY 88 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHh
Confidence 468999999999999999999998764211 122222211 1233332 578999999754
No 188
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.00 E-value=7e-06 Score=76.00 Aligned_cols=78 Identities=17% Similarity=0.080 Sum_probs=48.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... ....++++.... .+.++. .+.|+||||...... .....+++++
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~---~~~~~~~~~d 82 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR---LRPLSYRGAD 82 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC-----CGGGTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH---HHHhhccCCC
Confidence 458999999999999999999997764 222333332221 233333 688999999854322 1112455566
Q ss_pred cccccCCC
Q 011507 336 RIEKLDDP 343 (484)
Q Consensus 336 ~i~~l~d~ 343 (484)
.+..+.|.
T Consensus 83 ~~ilv~d~ 90 (212)
T 2j0v_A 83 IFVLAFSL 90 (212)
T ss_dssp EEEEEEET
T ss_pred EEEEEEEC
Confidence 55544443
No 189
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.99 E-value=7.7e-06 Score=74.52 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=47.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeE--EEEeCC---cEEEEecCCCccCCCCChHHHHHHhccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQ--EVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCK 335 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~--~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~ 335 (484)
..++|+|+|.+|||||||+|+|.+... ....++++.... .+.++. .+.|+||||....... ....+++++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---~~~~~~~~d 91 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRL---RPLSYPMTD 91 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTT---GGGGCTTCS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHH---HHHhcCCCC
Confidence 468999999999999999999998753 233333333222 233332 5789999997543211 112344555
Q ss_pred cccccCC
Q 011507 336 RIEKLDD 342 (484)
Q Consensus 336 ~i~~l~d 342 (484)
.+..+.|
T Consensus 92 ~~i~v~d 98 (194)
T 2atx_A 92 VFLICFS 98 (194)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 5544444
No 190
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.98 E-value=3.3e-06 Score=87.21 Aligned_cols=107 Identities=16% Similarity=0.283 Sum_probs=65.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc--------ce---e-----cCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV--------AN---V-----GATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~--------~~---v-----~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
..++|+++|.+|+|||||+|+|++... .. + ...+|+|.+...+.+ +..+.|+||||....
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH-
Confidence 468999999999999999999997310 00 0 014577776554443 357999999997642
Q ss_pred CCChHHHHHHhccccccccCCCch----hHH---HHHhhCCcc-hhhhhcCCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG----PVK---EILNRCPAN-LLISLYKLPSFDS 370 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~----~v~---~il~~~~~~-~l~~~~ki~~~~~ 370 (484)
.......+..++.+..+.|... ... .++.....+ .+...||+|...+
T Consensus 89 --~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 89 --IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp --HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred --HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 1223344566666655554322 112 223334444 4567899986643
No 191
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.98 E-value=9.5e-06 Score=75.79 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=38.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcccee-cCCCCeeeeeEEEEeC---CcEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANV-GATPGLTRSMQEVQLD---KNVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v-~~~pg~Tr~~~~~~l~---~~i~liDTPGi~~ 319 (484)
..++|+|+|.+|||||||+|+|.+...... .++.|.+. ...+.++ -.+.|+||||...
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHh
Confidence 468999999999999999999998764221 22222222 1122332 2578999999754
No 192
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.98 E-value=1.4e-06 Score=94.28 Aligned_cols=80 Identities=30% Similarity=0.377 Sum_probs=44.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce--------e------cCCCCeeeeeEEEEe-----C---CcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN--------V------GATPGLTRSMQEVQL-----D---KNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~--------v------~~~pg~Tr~~~~~~l-----~---~~i~liDTPGi~ 318 (484)
.-.+|+|+|.+|+|||||+|+|+...... + ....|+|...+.+.+ + ..+.|+||||..
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34689999999999999999998632110 1 112566654332221 1 357899999987
Q ss_pred cCCCCChHHHHHHhccccccccCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
... ......++.|+.+..+.|.
T Consensus 85 dF~---~ev~r~l~~aD~aILVVDa 106 (600)
T 2ywe_A 85 DFS---YEVSRALAACEGALLLIDA 106 (600)
T ss_dssp GGH---HHHHHHHHTCSEEEEEEET
T ss_pred hHH---HHHHHHHHhCCEEEEEEEC
Confidence 542 2344556777666555443
No 193
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.97 E-value=3.1e-05 Score=70.33 Aligned_cols=95 Identities=13% Similarity=0.224 Sum_probs=62.5
Q ss_pred HHHHHHHHhhhc---CEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc----CCe
Q 011507 135 FYKELVKVIEVS---DVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE----LPA 207 (484)
Q Consensus 135 ~~~el~kvie~s---DvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~----~p~ 207 (484)
+.......+..+ |++++|+|+.++.+.....+.+.+.. .+.|+++|+||+||.+...+......+.+. ...
T Consensus 92 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 92 WGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 333344444445 99999999999877655555566654 468999999999999876544333333321 111
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..| ..|+.++.|++.|++.|.+..
T Consensus 170 ~~~-----------------------~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 170 ELI-----------------------LFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp EEE-----------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred ceE-----------------------EEEccCCCCHHHHHHHHHHHh
Confidence 122 345667789999998887654
No 194
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.96 E-value=4e-06 Score=86.56 Aligned_cols=106 Identities=14% Similarity=0.159 Sum_probs=58.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeee--------------EE--EEe------CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSM--------------QE--VQL------DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~--------------~~--~~l------~~~i~liDTPGi~ 318 (484)
..++|+++|.+|+|||||+|+|++.........+++|... .. ... ...+.|+||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 4689999999999999999999985432221111222110 00 000 1468899999953
Q ss_pred cCCCCChHHHHHHhccccccccCCCch-----hHH---HHHhhCC-cchhhhhcCCCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVG-----PVK---EILNRCP-ANLLISLYKLPSFD 369 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~-----~v~---~il~~~~-~~~l~~~~ki~~~~ 369 (484)
.. .......+..++.+..+.|... ... .++.... ++.+...||+|...
T Consensus 87 ~~---~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 143 (403)
T 3sjy_A 87 VL---MATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS 143 (403)
T ss_dssp GG---HHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred HH---HHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc
Confidence 21 1223334566665554444322 111 2233323 35677789987653
No 195
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.95 E-value=1.3e-05 Score=73.32 Aligned_cols=59 Identities=25% Similarity=0.360 Sum_probs=40.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce-ecCCCCeeeeeEEEEeCC---cEEEEecCCCcc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN-VGATPGLTRSMQEVQLDK---NVKLLDCPGVVM 319 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~-v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~ 319 (484)
..++|+|||.+|||||||+|.|.+..... ..++.|++.....+.++. .+.++||||...
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~ 90 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLER 90 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcc
Confidence 35899999999999999999999876432 223334333333455543 345699999754
No 196
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.95 E-value=5.6e-06 Score=82.14 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC-HHHHHHHHHHHHhcCCeEEEEcc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-RESVEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp-~e~~~~wl~~l~~~~p~v~f~~~ 213 (484)
|.......+..+|++++|+|+.+ ++.....+.+.+.. .+.|.|+|+||+|+.. +..+..++..+.+.++...+
T Consensus 78 ~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~--- 151 (301)
T 1ega_A 78 MNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDI--- 151 (301)
T ss_dssp HTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEE---
T ss_pred HHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCce---
Confidence 34445667788999999999988 65444445444432 3689999999999997 66777788777765543111
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcc
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~ 258 (484)
.++|+.++.|.+.|++.+..+++.++
T Consensus 152 -------------------i~iSA~~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 152 -------------------VPISAETGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp -------------------EECCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred -------------------EEEECCCCCCHHHHHHHHHHhCCcCC
Confidence 14556677889999999988776543
No 197
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.87 E-value=8.5e-06 Score=82.96 Aligned_cols=60 Identities=25% Similarity=0.284 Sum_probs=31.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCC--------CCeeeeeEEEEe--C---CcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGAT--------PGLTRSMQEVQL--D---KNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~--------pg~Tr~~~~~~l--~---~~i~liDTPGi~~~ 320 (484)
..++|+|||.+|||||||+|+|.+......+.. |+++.....+.+ + ..+.++||||+...
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~ 108 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDA 108 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccccc
Confidence 358899999999999999999988765433332 222222222222 1 25889999999644
No 198
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.86 E-value=3e-05 Score=85.73 Aligned_cols=120 Identities=15% Similarity=0.218 Sum_probs=73.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc--cc---ee------cC------CCCeeeeeEEEE--e-C-------CcEEEEe
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH--VA---NV------GA------TPGLTRSMQEVQ--L-D-------KNVKLLD 313 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~--~~---~v------~~------~pg~Tr~~~~~~--l-~-------~~i~liD 313 (484)
...+|+|+|.+|+|||||+++|.... .. .+ .+ ..|+|.....+. + + ..+.|+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 45789999999999999999997431 10 11 11 346665543332 2 2 5789999
Q ss_pred cCCCccCCCCChHHHHHHhccccccccCCCchhH----HHH---HhhCCcchhhhhcCCCCCC-CHHHHHHHHHHHhC
Q 011507 314 CPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV----KEI---LNRCPANLLISLYKLPSFD-SVDDFLQKVATVRG 383 (484)
Q Consensus 314 TPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v----~~i---l~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~~g 383 (484)
|||.... .......++.|+.+..+.|+...+ ..+ +.....+.+...||+|... +.++.+..+....+
T Consensus 89 TPG~~df---~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~ 163 (704)
T 2rdo_7 89 TPGHVDF---TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLG 163 (704)
T ss_pred CCCccch---HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhC
Confidence 9998643 234556777787776666654321 122 2233445677789998643 44555555554433
No 199
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.86 E-value=3.5e-06 Score=91.33 Aligned_cols=103 Identities=18% Similarity=0.276 Sum_probs=59.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC-CeeeeeEE--EEe-------------------CCcEEEEecCCCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP-GLTRSMQE--VQL-------------------DKNVKLLDCPGVV 318 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p-g~Tr~~~~--~~l-------------------~~~i~liDTPGi~ 318 (484)
+.++|+|+|.+|+|||||+|+|++..+. ...| |+|.+... +.. ...+.|+||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4678999999999999999999987542 2233 55554221 111 0148999999985
Q ss_pred cCCCCChHHHHHHhccccccccCCCch---h----HHHHHhhCCcchhhhhcCCCCC
Q 011507 319 MLKSGENDASIALRNCKRIEKLDDPVG---P----VKEILNRCPANLLISLYKLPSF 368 (484)
Q Consensus 319 ~~~~~~~~~~~~L~~~~~i~~l~d~~~---~----v~~il~~~~~~~l~~~~ki~~~ 368 (484)
....... ..++.|+.+..+.|... + ....+.....+.+...||+|..
T Consensus 82 ~F~~~~~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 82 AFTTLRK---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRI 135 (594)
T ss_dssp CCTTSBC---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred HHHHHHH---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccc
Confidence 4322111 12344554444443322 1 1223444555677788888753
No 200
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.82 E-value=4.2e-06 Score=88.76 Aligned_cols=59 Identities=24% Similarity=0.493 Sum_probs=46.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
++.+|+++|.+|+|||||+|+|.+..+ ..+..+|+|.+...+.+ +..+.|+||||....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f 64 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAF 64 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHH
Confidence 467899999999999999999998664 34566788877654433 357899999997543
No 201
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.82 E-value=3.9e-05 Score=75.88 Aligned_cols=78 Identities=21% Similarity=0.136 Sum_probs=49.3
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEE--EEeCC---cEEEEecCCCccCCCCChHHHHHHhcc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQE--VQLDK---NVKLLDCPGVVMLKSGENDASIALRNC 334 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~--~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~ 334 (484)
...++|+++|.+|||||||+|++.+... .+..+++|..... +.++. .+.|+||||....... ....++++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~---~~~~~~~~ 227 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRL---RPLSYPQT 227 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTT---GGGGCTTC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHH---HHHhccCC
Confidence 3568999999999999999999997653 3445556654333 23332 3559999997543211 11234555
Q ss_pred ccccccCC
Q 011507 335 KRIEKLDD 342 (484)
Q Consensus 335 ~~i~~l~d 342 (484)
+.+..+.|
T Consensus 228 d~~i~v~d 235 (332)
T 2wkq_A 228 DVFLICFS 235 (332)
T ss_dssp SEEEEEEE
T ss_pred CEEEEEEe
Confidence 55544444
No 202
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.81 E-value=1.3e-05 Score=82.45 Aligned_cols=106 Identities=14% Similarity=0.220 Sum_probs=63.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc---------------eecCCCCeeeeeEEEEe---CCcEEEEecCCCccCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA---------------NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~---------------~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~~ 322 (484)
..++|+++|.+|+|||||+|+|++.... ......|+|.+...+.+ +..+.|+||||.....
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~- 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV- 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH-
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH-
Confidence 3578999999999999999999974210 01124678877655443 3579999999975320
Q ss_pred CChHHHHHHhccccccccCCCch----hHH---HHHhhCCcc-hhhhhcCCCCCC
Q 011507 323 GENDASIALRNCKRIEKLDDPVG----PVK---EILNRCPAN-LLISLYKLPSFD 369 (484)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~d~~~----~v~---~il~~~~~~-~l~~~~ki~~~~ 369 (484)
......+..++.+..+.|... ... .++.....+ .+...||+|...
T Consensus 81 --~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 81 --KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp --HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS
T ss_pred --HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC
Confidence 111222344555444444322 111 233344445 356789988654
No 203
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.80 E-value=4.2e-06 Score=87.96 Aligned_cols=105 Identities=19% Similarity=0.152 Sum_probs=61.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc--c----------------------ceec------CCCCeeeeeEEEEe---CC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH--V----------------------ANVG------ATPGLTRSMQEVQL---DK 307 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~--~----------------------~~v~------~~pg~Tr~~~~~~l---~~ 307 (484)
..++|+++|.+|+|||||+|+|++.. + +.+. ..+|+|.+.....+ +.
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 45899999999999999999998641 0 0010 13677876554333 34
Q ss_pred cEEEEecCCCccCCCCChHHHHHHhccccccccCCCchhH-----------H---HHHhhCCc-chhhhhcCCCCC
Q 011507 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGPV-----------K---EILNRCPA-NLLISLYKLPSF 368 (484)
Q Consensus 308 ~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~v-----------~---~il~~~~~-~~l~~~~ki~~~ 368 (484)
.+.|+||||.... .......+..++.+..+.|..... . .++..... ..+...||+|..
T Consensus 86 ~~~iiDtPGh~~f---~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 86 QVTVIDAPGHRDF---IKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEEEEECCCCTTH---HHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred eEEEEECCCcHHH---HHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 7899999995321 112223345566555555544321 1 12223332 356677888765
No 204
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.79 E-value=1.9e-05 Score=69.09 Aligned_cols=93 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEE
Q 011507 132 DRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAF 210 (484)
Q Consensus 132 ~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f 210 (484)
...+.......+..+|++|+|+|+.+++......+.+++.. .+.|+++|+||+||.+... ...+ . + +...
T Consensus 66 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~---~-~-~~~~-- 136 (161)
T 2dyk_A 66 EKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDPKHELYLGPL---Y-G-LGFG-- 136 (161)
T ss_dssp CHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSGGGGGGCGGG---G-G-GSSC--
T ss_pred HHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccccchHhHHHH---H-h-CCCC--
Confidence 44566667778899999999999999977655666666655 3689999999999986521 1111 1 1 1100
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.....|+.++.|.+.|++.|.+.
T Consensus 137 --------------------~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 137 --------------------DPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp --------------------SCEECBTTTTBSHHHHHHHHHHH
T ss_pred --------------------CeEEEecccCCChHHHHHHHHHh
Confidence 11245667788999999888654
No 205
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.78 E-value=1.6e-05 Score=89.53 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=62.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccceecCCC---------------CeeeeeEE--EEe-----------------C
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVANVGATP---------------GLTRSMQE--VQL-----------------D 306 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~p---------------g~Tr~~~~--~~l-----------------~ 306 (484)
...+|+|||.+|+|||||+|+|+..........+ |+|..... +.+ +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 3578999999999999999999975332222223 33322111 111 2
Q ss_pred CcEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh----HHHHH---hhCCcchhhhhcCCCC
Q 011507 307 KNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEIL---NRCPANLLISLYKLPS 367 (484)
Q Consensus 307 ~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il---~~~~~~~l~~~~ki~~ 367 (484)
..+.|+||||.... .......++.++.+..+.|.... ...++ .....+.+...||+|.
T Consensus 98 ~~i~liDTPG~~df---~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDF---SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSS---CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhh---HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 35889999998754 23556677888877666554332 11122 2233455667788764
No 206
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.77 E-value=1.6e-05 Score=71.39 Aligned_cols=99 Identities=15% Similarity=0.037 Sum_probs=56.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEcc
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f~~~ 213 (484)
.+..+|++|.|+|+.++.+... ..+..+.... ..+.|+|+|+||+||.+. +....|.. .+....|
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~--- 146 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE----SWNAAFL--- 146 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH----HTTCEEE---
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH----HhCCcEE---
Confidence 3567999999999998743221 1122222221 236899999999999643 33333333 2222222
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhH
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSS 277 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSS 277 (484)
..|+.++.|.+.+++.|.+...... |..++||||
T Consensus 147 --------------------~~Sa~~~~~v~~l~~~l~~~~~~~~----------~~~~~gkss 180 (181)
T 3t5g_A 147 --------------------ESSAKENQTAVDVFRRIILEAEKMD----------GACSQGKSS 180 (181)
T ss_dssp --------------------ECCTTSHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred --------------------EEecCCCCCHHHHHHHHHHHHHHhc----------CCcccCcCC
Confidence 3455677788888888877554322 678889987
No 207
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=97.74 E-value=3.8e-05 Score=69.72 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=58.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHH-hcCC--eEEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLR-EELP--AVAFK 211 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~---~~K~~IlVLNKiDLvp~e~~~~wl~~l~-~~~p--~v~f~ 211 (484)
...+..+|+||+|+|+.++.+... ..+..++.... .+.|+|+|+||+||.+......+..++. ..+. .+.+
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 163 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI- 163 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE-
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEE-
Confidence 345688999999999998743211 23333333211 4689999999999986543444555443 1111 1222
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|++.|++.|.+..
T Consensus 164 ---------------------~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 164 ---------------------CASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ---------------------EECBTTTTBTHHHHHHHHHHHC
T ss_pred ---------------------EEccCCCCcCHHHHHHHHHHHH
Confidence 1355677889999999887654
No 208
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=97.73 E-value=8e-05 Score=78.68 Aligned_cols=99 Identities=15% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHH----HHHHHHhc--CC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEK----WLKYLREE--LP 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~----wl~~l~~~--~p 206 (484)
..|.++....+..+|++|+|+||+++......+...++.. .+.|.|+|+||+||++.+..+. +..++... ++
T Consensus 84 ~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~ 161 (482)
T 1wb1_A 84 ADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLK 161 (482)
T ss_dssp HHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGG
T ss_pred HHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccc
Confidence 4577888899999999999999998654322222233333 3578899999999998654333 33334332 11
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+.+ .+.|+.++.|.+.|++.|.++.+
T Consensus 162 ~~~i----------------------i~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 162 NSSI----------------------IPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GCCE----------------------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred cceE----------------------EEEECcCCCCHHHHHHHHHHhhc
Confidence 1111 24556678899999999888654
No 209
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.71 E-value=2e-05 Score=81.42 Aligned_cols=58 Identities=21% Similarity=0.416 Sum_probs=40.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce--ecCCCCeeeeeEEE--Ee------------------------CCcEEEE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQEV--QL------------------------DKNVKLL 312 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~--v~~~pg~Tr~~~~~--~l------------------------~~~i~li 312 (484)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+.... .+ ...+.|+
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 35899999999999999999999754221 22346777654321 11 1468999
Q ss_pred ecCCCc
Q 011507 313 DCPGVV 318 (484)
Q Consensus 313 DTPGi~ 318 (484)
||||..
T Consensus 89 DtPGh~ 94 (410)
T 1kk1_A 89 DAPGHE 94 (410)
T ss_dssp ECSSHH
T ss_pred ECCChH
Confidence 999963
No 210
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.71 E-value=3.3e-05 Score=71.15 Aligned_cols=90 Identities=20% Similarity=0.118 Sum_probs=54.2
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH-hCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~-~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~v~f~~ 212 (484)
....+..+|+||+|+|+.++.+... ......+.. ...+.|+|+|+||+||.+.. ....|...+ .++.+
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~---- 159 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL--GIPFI---- 159 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHH--TCCEE----
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHc--CCEEE----
Confidence 3456678999999999998754221 112222222 22368999999999995433 233333222 12322
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|++.|++.|.....
T Consensus 160 ---------------------~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 160 ---------------------ESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp ---------------------ECBTTTTBSSHHHHHHHHHHHH
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345667788888888776554
No 211
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.70 E-value=3.5e-05 Score=68.07 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=59.2
Q ss_pred HHHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEcc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTR--CIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCS 213 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r--~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~~~ 213 (484)
...+..+|+||+|+|+.+|.+.. ...+..++... ..+.|+++|+||+||.+......+...+...+ ..+.+
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--- 145 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQI--- 145 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEE---
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEE---
Confidence 34567899999999999985432 12233333211 14789999999999987644444555543221 11122
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...|+.++.|.+.+++.|.+...
T Consensus 146 -------------------~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 146 -------------------FKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp -------------------EECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------------EECcCCCCcCHHHHHHHHHHHHh
Confidence 13566778899999988876543
No 212
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.69 E-value=2.8e-05 Score=80.36 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=28.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccce--ecCCCCeeeeeE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVAN--VGATPGLTRSMQ 301 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~~--v~~~pg~Tr~~~ 301 (484)
..++|+++|.+|+|||||+|+|++..... ....+|+|.+..
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~ 49 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLG 49 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEec
Confidence 46899999999999999999999764322 223467777543
No 213
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=97.69 E-value=9.5e-05 Score=78.08 Aligned_cols=88 Identities=24% Similarity=0.325 Sum_probs=58.5
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
..+..+..+|+||+|+|+.+|.+.....+.+.+ .++|+|+|+||+||.+......+..++....|.+.
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~-------- 383 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVK-------- 383 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEE--------
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEE--------
Confidence 345678899999999999998764333343333 37899999999999764222333333321124333
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
+|+.++.|.+.|++.|.+..
T Consensus 384 -----------------iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 384 -----------------ISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp -----------------EEGGGTCCHHHHHHHHHHHT
T ss_pred -----------------EECCCCCCHHHHHHHHHHHH
Confidence 34567789999999887643
No 214
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.69 E-value=4e-05 Score=72.25 Aligned_cols=75 Identities=20% Similarity=0.275 Sum_probs=42.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEEEEeCC---cEEEEecCCCccCCCCChHHHHHHhcccc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQEVQLDK---NVKLLDCPGVVMLKSGENDASIALRNCKR 336 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~~~l~~---~i~liDTPGi~~~~~~~~~~~~~L~~~~~ 336 (484)
+.++|.|||-+||||||||+.+...... ...++-|..-....+..+. .+.|+||+|--... .-....+++++.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~---~l~~~~~~~a~~ 88 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR---SLIPSYIRDSAA 88 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG---GGHHHHHTTCSE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh---hHHHHHhccccE
Confidence 3589999999999999999999865531 1223333322222333333 46799999964331 122334555554
Q ss_pred cc
Q 011507 337 IE 338 (484)
Q Consensus 337 i~ 338 (484)
+.
T Consensus 89 ~i 90 (216)
T 4dkx_A 89 AV 90 (216)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 215
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.67 E-value=5.7e-05 Score=68.32 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=58.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-C--CeEEEEcc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-L--PAVAFKCS 213 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~--p~v~f~~~ 213 (484)
...+..+|++|+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+......+.+++... + ..+.+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~--- 154 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI--- 154 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE---
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEE---
Confidence 455688999999999999853211 1222222210 2478999999999998643333444444321 1 11122
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
...|+.++.|.+.|++.|.+.+...
T Consensus 155 -------------------~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 155 -------------------QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp -------------------EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred -------------------EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 1356677889999999988766543
No 216
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.67 E-value=0.00014 Score=68.28 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHH---HHHHHHHhCCCCceeEEeeccCCCCHHHH----HHHHHHHHhcC-Ce
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCID---MEKMVMKAGPDKHLVLLLNKIDLVPRESV----EKWLKYLREEL-PA 207 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~---le~~i~~~~~~K~~IlVLNKiDLvp~e~~----~~wl~~l~~~~-p~ 207 (484)
+..+......+|+||+|+|+.++.+..... +...+....++.|+|+|+||+||.+...+ ......+...+ +.
T Consensus 99 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 99 MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC
Confidence 344555577889999999999987654322 22233322237899999999999865322 12233333332 21
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|. ..|+.++.|++.|++.|.....
T Consensus 179 ~~~~----------------------~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 179 IKFS----------------------SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp EEEE----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ceEE----------------------EEecccCCCHHHHHHHHHHHHH
Confidence 2221 3456778899999888776554
No 217
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.66 E-value=4.6e-05 Score=67.10 Aligned_cols=89 Identities=20% Similarity=0.121 Sum_probs=54.4
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH-hCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEcc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~-~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~v~f~~~ 213 (484)
...+..+|++|+|+|+.++.+... ......+.. ...+.|+++|+||+||.++. ....|...+ ..+.+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~----- 142 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKEL--GIPFI----- 142 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHH--TCCEE-----
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHc--CCeEE-----
Confidence 445678999999999998754221 122222222 23478999999999995432 233332222 12322
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 143 --------------------~~Sa~~~~gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 143 --------------------ESSAKNDDNVNEIFFTLAKLIQ 164 (170)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred --------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 2345677889999988876554
No 218
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.65 E-value=6.3e-05 Score=68.28 Aligned_cols=99 Identities=13% Similarity=0.112 Sum_probs=61.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v 208 (484)
|.......+..+|+||+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+......+...+.... ..+
T Consensus 80 ~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 159 (188)
T 1zd9_A 80 FRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREI 159 (188)
T ss_dssp HHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCe
Confidence 44445566789999999999998744221 1222222211 14789999999999986533344444443211 111
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+ ..+|+.++.|++.|++.|.+...
T Consensus 160 ~~----------------------~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 160 CC----------------------YSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp EE----------------------EECCTTTCTTHHHHHHHHHHTCC
T ss_pred eE----------------------EEEECCCCCCHHHHHHHHHHHHH
Confidence 11 14566788899999998876543
No 219
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.65 E-value=5e-05 Score=66.69 Aligned_cols=95 Identities=15% Similarity=0.061 Sum_probs=58.2
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~ 211 (484)
.....+..+|++|+|+|+.+|.+... ..+..++.. ...+.|+++|+||+||.+......+...+.... ..+.+
T Consensus 60 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 138 (164)
T 1r8s_A 60 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI- 138 (164)
T ss_dssp HHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE-
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEE-
Confidence 34456889999999999998843211 122222211 123689999999999987533344444443211 11111
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|.+.+++.|.+..
T Consensus 139 ---------------------~~~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 139 ---------------------QATCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp ---------------------EECBTTTTBTHHHHHHHHHHHC
T ss_pred ---------------------EEcccCCCcCHHHHHHHHHHHH
Confidence 1356677889999998887644
No 220
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=97.65 E-value=0.00011 Score=75.84 Aligned_cols=101 Identities=14% Similarity=0.248 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCC-CCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcC-C
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPL-GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREEL-P 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl-~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~~-p 206 (484)
..|.+++...+..+|++|+|+||.++. .........++... +.+++|+|+||+||++.+. .+.+.+++.... .
T Consensus 94 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 172 (410)
T 1kk1_A 94 EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAE 172 (410)
T ss_dssp HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcC
Confidence 457778888888999999999999874 11111111223322 3468999999999998653 344455554311 0
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+++ ...|+..+.|.+.|++.|.++.+.
T Consensus 173 ~~~~----------------------i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 173 NAPI----------------------IPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp TCCE----------------------EECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCeE----------------------EEeeCCCCCCHHHHHHHHHHhCCC
Confidence 1111 234567788999999999886653
No 221
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.64 E-value=8.1e-05 Score=77.03 Aligned_cols=60 Identities=28% Similarity=0.292 Sum_probs=38.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc----cceecCCCCeeeeeEEEEe--CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH----VANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~----~~~v~~~pg~Tr~~~~~~l--~~~i~liDTPGi~~~ 320 (484)
....|||+|.+|+|||||||+|.|.. ...+...+.+|+....+.. ..++.++|+||+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~ 133 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 133 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch
Confidence 45789999999999999999999842 1111112223433222221 247899999999754
No 222
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.64 E-value=1.5e-05 Score=74.35 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=29.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC-----ccceecCCCCee
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPGLT 297 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~-----~~~~v~~~pg~T 297 (484)
....|+|+|++|||||||+|.|.+. +++.++..||+|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~ 70 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSK 70 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCc
Confidence 3578999999999999999999865 455666667654
No 223
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.63 E-value=5.4e-05 Score=78.53 Aligned_cols=58 Identities=17% Similarity=0.305 Sum_probs=39.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCccce---ecCCCCeeeeeEEEEe-----CCcEEEEecCCCccC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHVAN---VGATPGLTRSMQEVQL-----DKNVKLLDCPGVVML 320 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~~~---v~~~pg~Tr~~~~~~l-----~~~i~liDTPGi~~~ 320 (484)
+++||||.+|+|||||+|+|.|..+.. ....|+.|+....+.. ...+.++|+||+...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 349999999999999999999986432 2224666665333222 126889999999754
No 224
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.62 E-value=1.6e-05 Score=83.68 Aligned_cols=105 Identities=15% Similarity=0.117 Sum_probs=51.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc------------------------ceec------CCCCeeeeeEE--EEe-CC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV------------------------ANVG------ATPGLTRSMQE--VQL-DK 307 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~------------------------~~v~------~~pg~Tr~~~~--~~l-~~ 307 (484)
..++|+++|.+|+|||||+|+|+...- +.+. ...|+|.+... +.. +.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 468999999999999999999974210 0011 13577766543 222 34
Q ss_pred cEEEEecCCCccCCCCChHHHHHHhccccccccCCCchh-----------HH---HHHhhCCcc-hhhhhcCCCCC
Q 011507 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP-----------VK---EILNRCPAN-LLISLYKLPSF 368 (484)
Q Consensus 308 ~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-----------v~---~il~~~~~~-~l~~~~ki~~~ 368 (484)
.+.|+||||...-.. .....+..++.+..+.|.... .. .++.....+ .+...||+|..
T Consensus 122 ~~~iiDtPGh~~f~~---~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT---NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP 194 (467)
T ss_dssp EEEECCCCC--------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred EEEEEECCCcHHHHH---HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence 689999999753311 122234555555444443221 11 122333433 56778999864
No 225
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.62 E-value=2.6e-05 Score=68.60 Aligned_cols=94 Identities=16% Similarity=0.055 Sum_probs=56.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCH----HHHHHHHHHHHhcCCeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR----ESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~----e~~~~wl~~l~~~~p~v~f~ 211 (484)
.....+..+|++|+|+|+.+|.+... ..+..+......+.|+++|+||+||.+. +....+...+...+....|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~- 146 (170)
T 1ek0_A 68 LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFF- 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEE-
T ss_pred hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEE-
Confidence 34556789999999999998754321 1122222222357889999999999753 2222233333222222222
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 147 ----------------------~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 147 ----------------------ETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ----------------------ECCTTTCTTHHHHHHHHHTTS
T ss_pred ----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 345567789999998887643
No 226
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.61 E-value=4.2e-05 Score=69.57 Aligned_cols=93 Identities=17% Similarity=0.251 Sum_probs=58.0
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh--------CCCCceeEEeeccCCCCHHHHHHHHHHHH-----hc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA--------GPDKHLVLLLNKIDLVPRESVEKWLKYLR-----EE 204 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~--------~~~K~~IlVLNKiDLvp~e~~~~wl~~l~-----~~ 204 (484)
...+..+|+||+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+......+...+. +.
T Consensus 81 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 81 ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 345678999999999998854211 2233332210 02689999999999987643344443332 22
Q ss_pred CCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 205 LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 205 ~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...-.| ..|+.++.|++.|++.|.+...
T Consensus 161 ~~~~~~-----------------------~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 161 HPFVIF-----------------------ASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp SCEEEE-----------------------ECBTTTTBTHHHHHHHHHHHHH
T ss_pred CeeEEE-----------------------EeeCCCccCHHHHHHHHHHHHH
Confidence 222222 3556778899999988877654
No 227
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.58 E-value=3.2e-05 Score=75.54 Aligned_cols=59 Identities=24% Similarity=0.425 Sum_probs=35.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceec-------CCCCeeee------eEEEEeCCcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVG-------ATPGLTRS------MQEVQLDKNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~-------~~pg~Tr~------~~~~~l~~~i~liDTPGi~~~ 320 (484)
.+++||||.+|+|||||||+|.|......| +.+.++.. .|...+...+.++|+||+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 378999999999999999999986543333 22222221 122223457899999999764
No 228
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.58 E-value=9e-05 Score=73.13 Aligned_cols=103 Identities=15% Similarity=0.187 Sum_probs=68.1
Q ss_pred cchHHHHHHHHHHhhhcCEEEEEEec-CCCCCCCCH-HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc---
Q 011507 130 NSDRAFYKELVKVIEVSDVILEVLDA-RDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--- 204 (484)
Q Consensus 130 ~~~k~~~~el~kvie~sDvIleVlDA-RdPl~~r~~-~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--- 204 (484)
...+.|.......+..+|+||+|+|+ ..++..... .+.+.+.. .++|+|+|+||+|+++... .+..++...
T Consensus 152 ~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~ 227 (315)
T 1jwy_B 152 DIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIP 227 (315)
T ss_dssp CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSC
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCcccCCcch--HHHHHHhCCCcc
Confidence 44567888889999999999999997 555554443 45555532 3689999999999987543 133344432
Q ss_pred --CCeEEEEccchhhhhhcCCCccCCCCCCccccccc---ccCHHHHHHHHHhhhhhcc
Q 011507 205 --LPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSD---CLGAETLIKLLKNYSRSHE 258 (484)
Q Consensus 205 --~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~g~~~Ll~~Lk~~~~~~~ 258 (484)
.+.+++. ..++.+ ..|.+.|++.+..+.+.++
T Consensus 228 ~~~~~~~v~----------------------~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 228 LTLGFIGVI----------------------NRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp CTTCEEECC----------------------CCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred CCCCeEEEe----------------------cCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 1222221 223333 6788999999998887654
No 229
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.58 E-value=4.8e-05 Score=68.60 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=61.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc---CCeE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE---LPAV 208 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~---~p~v 208 (484)
+.......+..+|++|+|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+......+.+++... ...+
T Consensus 75 ~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 154 (186)
T 1ksh_A 75 LRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHW 154 (186)
T ss_dssp HHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCE
T ss_pred HHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCce
Confidence 33334556788999999999998854321 1222332211 2468999999999998754444444444321 0111
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+ ...|+.++.|.+.|++.|.+....
T Consensus 155 ~~----------------------~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 155 RI----------------------QGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp EE----------------------EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EE----------------------EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 22 135667788999999988776543
No 230
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.58 E-value=2.3e-05 Score=81.76 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=43.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc--cc------------ee----------------cCCCCeeeeeEEEEe---CC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH--VA------------NV----------------GATPGLTRSMQEVQL---DK 307 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~--~~------------~v----------------~~~pg~Tr~~~~~~l---~~ 307 (484)
..++|+++|.+|+|||||+|+|+... +. .. ...+|+|.+.....+ +.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 45899999999999999999998641 10 00 114688877654332 35
Q ss_pred cEEEEecCCCccCCCCChHHHHHHhccccccccCCC
Q 011507 308 NVKLLDCPGVVMLKSGENDASIALRNCKRIEKLDDP 343 (484)
Q Consensus 308 ~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~ 343 (484)
.+.|+||||..... ......+..++.+..+.|.
T Consensus 85 ~~~iiDtpG~~~f~---~~~~~~~~~aD~~ilVvDa 117 (435)
T 1jny_A 85 FFTIIDAPGHRDFV---KNMITGASQADAAILVVSA 117 (435)
T ss_dssp EEEECCCSSSTTHH---HHHHHTSSCCSEEEEEEEC
T ss_pred EEEEEECCCcHHHH---HHHHhhhhhcCEEEEEEEC
Confidence 79999999975321 1222334555555444443
No 231
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.58 E-value=0.00017 Score=64.45 Aligned_cols=92 Identities=15% Similarity=0.009 Sum_probs=58.0
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-----CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-----GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFK 211 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-----~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~ 211 (484)
...+..+|++|+|+|+.++.+. ..+...+... ..+.|+|+|+||+||.+......+..++.... ....+
T Consensus 80 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~- 156 (183)
T 1moz_A 80 RCYYADTAAVIFVVDSTDKDRM--STASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSI- 156 (183)
T ss_dssp GGTTTTEEEEEEEEETTCTTTH--HHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEE-
T ss_pred HHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE-
Confidence 3456789999999999988432 2233333221 25789999999999986533344444443211 11111
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...|+.++.|.+.|++.|.+...
T Consensus 157 ---------------------~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 157 ---------------------VASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp ---------------------EEEBGGGTBTHHHHHHHHHHHHH
T ss_pred ---------------------EEccCCCCcCHHHHHHHHHHHHH
Confidence 13566778899999998877654
No 232
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.58 E-value=9.3e-05 Score=81.27 Aligned_cols=120 Identities=20% Similarity=0.166 Sum_probs=74.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc--eec---------C------CCCeeeeeEEEEe---CCcEEEEecCCCccC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--NVG---------A------TPGLTRSMQEVQL---DKNVKLLDCPGVVML 320 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~---------~------~pg~Tr~~~~~~l---~~~i~liDTPGi~~~ 320 (484)
...+|+|+|.+|+|||||+++|.+.... ..+ + ..|+|...+...+ +..+.|+||||....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4578999999999999999999943211 001 0 1255554444333 346889999998643
Q ss_pred CCCChHHHHHHhccccccccCCCchh----HHH---HHhhCCcchhhhhcCCCCCCCHHHHHHHHHHHhC
Q 011507 321 KSGENDASIALRNCKRIEKLDDPVGP----VKE---ILNRCPANLLISLYKLPSFDSVDDFLQKVATVRG 383 (484)
Q Consensus 321 ~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~---il~~~~~~~l~~~~ki~~~~~~~e~l~~la~~~g 383 (484)
. ......++.++....+.|+... ... .+.....+.+...|++|.....++.+..++...+
T Consensus 88 ~---~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 88 V---GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLG 154 (665)
T ss_dssp H---HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred H---HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchhhhHHHHHHHHHHHhC
Confidence 1 3455567777766655554321 122 2333445667778998754456666766766555
No 233
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.58 E-value=8.1e-05 Score=67.46 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=56.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v~f 210 (484)
.....+..+|++|+|+|+.++.+... ......+... ..+.|+|+|+||+||.+.. ....|...+. .+.+.
T Consensus 81 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~- 157 (196)
T 3tkl_A 81 ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--IPFLE- 157 (196)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT--CCEEE-
T ss_pred hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcC--CcEEE-
Confidence 34556788999999999998754211 1122223222 3468999999999998653 2233322221 23322
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.|+.++.|++.+++.|......
T Consensus 158 ------------------------~Sa~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 158 ------------------------TSAKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp ------------------------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred ------------------------EeCCCCCCHHHHHHHHHHHHHH
Confidence 3456778889888887765543
No 234
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=97.57 E-value=0.00013 Score=67.54 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhC-----CCCceeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-----PDKHLVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~-----~~K~~IlVLNKiDLvp 190 (484)
..|.......+..+|+||+|+|+.++.+. ..+..++.... .+.|+|+|+||+||.+
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 155 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPD 155 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGG
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCcccc
Confidence 34555667788999999999999887442 23444444321 4689999999999975
No 235
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=97.56 E-value=6.2e-05 Score=68.12 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=57.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEccch
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKCSTQ 215 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~~~~~ 215 (484)
.+..+|++|+|+|+.+|.+... ..+..++... ..+.|+|+|+||+||.+......+...+.... ..+.+
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----- 160 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTI----- 160 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE-----
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEE-----
Confidence 3568999999999999854221 2233333211 14689999999999987533333433332111 01111
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
...|+.++.|.+.+++.|.+....
T Consensus 161 -----------------~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 161 -----------------VKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp -----------------EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -----------------EEccCCCccCHHHHHHHHHHHHHh
Confidence 245667788999999988776543
No 236
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=97.56 E-value=8.9e-05 Score=67.56 Aligned_cols=97 Identities=15% Similarity=0.103 Sum_probs=58.1
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEc
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~ 212 (484)
.......+..+|+||+|+|+.++.+... ......+... ..+.|+|+|+||+||.+... .......+.+.+....|.
T Consensus 89 ~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~- 167 (192)
T 2il1_A 89 NSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFC- 167 (192)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEE-
T ss_pred HHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEE-
Confidence 3445667788999999999998754322 1122233332 24689999999999975321 111222233332222221
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.|++.|.+..
T Consensus 168 ---------------------~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 168 ---------------------EASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 345667789999998886643
No 237
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=97.56 E-value=6.7e-05 Score=75.76 Aligned_cols=97 Identities=16% Similarity=0.285 Sum_probs=60.7
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC----HHHHHHHHHhC---CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC----IDMEKMVMKAG---PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELP 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~----~~le~~i~~~~---~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p 206 (484)
+..++.+.++.+|++|+|+|+.++.+... ..+...+.... ..+|+|+|+||+||.+.. .++.|.+++....+
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~ 305 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYP 305 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCC
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCC
Confidence 33455666788999999999965321111 12223333322 378999999999998754 34444443322111
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
. ..+|+.+..|.+.|++.|.+.+..
T Consensus 306 v-------------------------~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 306 V-------------------------FPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp B-------------------------CCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred E-------------------------EEEECCCCcCHHHHHHHHHHHHhh
Confidence 1 245667788999999998877654
No 238
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.55 E-value=9.4e-05 Score=66.82 Aligned_cols=93 Identities=17% Similarity=0.060 Sum_probs=57.6
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH----HHHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCe-EEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI----DMEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPA-VAF 210 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~----~le~~i~~~---~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~-v~f 210 (484)
....+..+|++|+|+|+.++....+. .+..++... ..+.|+|+|+||+||.+....+....++... .. -.|
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~ 169 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPE-GKFPVL 169 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTT-CCSCEE
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhc-CCceEE
Confidence 34467899999999999966332222 233333322 2478999999999997643333333334332 22 122
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.+++.|.+...
T Consensus 170 -----------------------~~Sa~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 170 -----------------------EAVATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp -----------------------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -----------------------EEecCCCcCHHHHHHHHHHHHH
Confidence 3456677899999888776543
No 239
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.53 E-value=0.00014 Score=63.69 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=54.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccch
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~ 215 (484)
...+..+|+++.|+|+.+|.+... ..++.+.... ..+.|+++|+||+||.+...+ ......+.+.++...+.
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFL---- 144 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEE----
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEE----
Confidence 345667999999999998754222 2222232221 347899999999999653211 11222222333222221
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+.++.|.+.|++.|.+.
T Consensus 145 ------------------~~Sa~~~~gi~~l~~~l~~~ 164 (167)
T 1c1y_A 145 ------------------ESSAKSKINVNEIFYDLVRQ 164 (167)
T ss_dssp ------------------ECBTTTTBSHHHHHHHHHHH
T ss_pred ------------------EecCCCCCCHHHHHHHHHHH
Confidence 34566788999999888654
No 240
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.53 E-value=6.2e-05 Score=66.13 Aligned_cols=93 Identities=11% Similarity=0.079 Sum_probs=56.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEcc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~ 213 (484)
.....+..+|++|+|+|+.+|.+... ..+..+.....++.|+++|+||+||.+... .+....+... +....|
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~--- 146 (170)
T 1r2q_A 71 LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD-NSLLFM--- 146 (170)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEE---
T ss_pred hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHH-cCCeEE---
Confidence 34556788999999999998743211 122223222234678899999999975321 1222222222 222222
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 147 --------------------~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 147 --------------------ETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp --------------------ECCTTTCTTHHHHHHHHHHTS
T ss_pred --------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 345567789999999887654
No 241
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.52 E-value=8.5e-05 Score=64.76 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=53.5
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCST 214 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~ 214 (484)
...+..+|+++.|+|+.++.+... ..+...+... ..+.|+++|+||+||.+.+........+.+. .+.+.
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----- 143 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIE----- 143 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEE-----
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEE-----
Confidence 346678999999999988743211 1111222222 1368999999999998743222222222222 23322
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.|+.++.|.+.+++.|.+..
T Consensus 144 --------------------~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 144 --------------------TSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp --------------------ECTTTCTTHHHHHHHHHHHH
T ss_pred --------------------ecCCCCCCHHHHHHHHHHHH
Confidence 34456778899988887654
No 242
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.52 E-value=0.00018 Score=74.25 Aligned_cols=100 Identities=13% Similarity=0.232 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCC-CCCHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcC-C
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLG-TRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREEL-P 206 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~-~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~-p 206 (484)
..|.+++...+..+|++|+|+||.++.. .........+... +.+|+|+|+||+||++.+ ..+.+.+++.... .
T Consensus 92 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (408)
T 1s0u_A 92 ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAE 170 (408)
T ss_dssp HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTT
T ss_pred HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 4577777777788899999999998751 1111111222222 356899999999998753 3444555554321 1
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+.| ...|+..+.|.+.|++.|.++.+
T Consensus 171 ~~~~----------------------i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 171 NAPI----------------------IPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp TCCE----------------------EEC------CHHHHHHHHHHHSC
T ss_pred CCeE----------------------EEeeCCCCCCHHHHHHHHHHhCC
Confidence 1111 13456777899999999988665
No 243
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.52 E-value=7.4e-05 Score=68.44 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=55.0
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC----CCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEcc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG----PDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~----~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~~ 213 (484)
..+..+|++|+|+|+.++.+... ..+..+..... .+.|+|+|+||+||.+... ......+.........|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--- 152 (207)
T 1vg8_A 76 AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYF--- 152 (207)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEE---
T ss_pred HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEE---
Confidence 34578999999999998754322 12222222221 3679999999999985432 22223333212211112
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 153 --------------------~~Sa~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 153 --------------------ETSAKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred --------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3455677899999988876554
No 244
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.52 E-value=6.8e-05 Score=67.13 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=58.2
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHH-------------HHHhcC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLK-------------YLREEL 205 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~-------------~l~~~~ 205 (484)
..+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+......++. .+...+
T Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 151 (186)
T 1mh1_A 72 LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI 151 (186)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT
T ss_pred HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhc
Confidence 356789999999999987543221 23334444345789999999999986543222221 111122
Q ss_pred CeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 206 PAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 206 p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
....+ ...|+.++.|.+.|++.|.+....
T Consensus 152 ~~~~~----------------------~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 152 GAVKY----------------------LECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TCSEE----------------------EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred CCcEE----------------------EEecCCCccCHHHHHHHHHHHHhc
Confidence 21111 245667888999999988776543
No 245
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.51 E-value=0.00012 Score=65.29 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=56.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH-hCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++|+|+|+.++.+... ..+...+.. ..++.|+++|+||+||.+... ...+..+... +....|
T Consensus 78 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~---- 152 (181)
T 2efe_B 78 APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE-NGLFFM---- 152 (181)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH-TTCEEE----
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHH-cCCEEE----
Confidence 4456788999999999998754211 111122222 224788999999999975321 2333333332 222222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 153 -------------------~~Sa~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 153 -------------------ETSAKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp -------------------ECCSSSCTTHHHHHHHHHHTCC
T ss_pred -------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 3455677899999998877554
No 246
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.51 E-value=6.8e-05 Score=79.51 Aligned_cols=32 Identities=22% Similarity=0.291 Sum_probs=26.0
Q ss_pred cceEEEEecCCCCchhHHHHHhh------cCccceecC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK------RCHVANVGA 292 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~------~~~~~~v~~ 292 (484)
.+..|+|+|.|||||||++|.|. |.+++.|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45789999999999999999999 777665554
No 247
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.51 E-value=0.00013 Score=66.50 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=58.0
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-----CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-----GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAF 210 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-----~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f 210 (484)
....+..+|+||+|+|+.+|.+. ..+...+... ..+.|+|+|+||+||.+......+...+...+ ..+.+
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~--~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~ 167 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERV--QESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYV 167 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEE
T ss_pred HHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEE
Confidence 34567899999999999988532 2222332211 13689999999999987544444544443221 11111
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|++.|++.|.+..
T Consensus 168 ----------------------~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 168 ----------------------QATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp ----------------------EECBTTTTBTHHHHHHHHHHHT
T ss_pred ----------------------EECcCCCcCCHHHHHHHHHHHH
Confidence 1356677889999998887644
No 248
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.50 E-value=0.00026 Score=63.56 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=54.8
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhc-C--CeEEEEcc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREE-L--PAVAFKCS 213 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~-~--p~v~f~~~ 213 (484)
...+..+|+||+|+|+.++.+... ..+..++... ..+.|+|+|+||+||........+..++... . ..+.+
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~--- 159 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHI--- 159 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE---
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEE---
Confidence 445678999999999999844221 1222222210 2578999999999997643233333333211 1 01111
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
...|+.++.|++.|++.|.+
T Consensus 160 -------------------~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 160 -------------------QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp -------------------EECBTTTTBTHHHHHHHHHT
T ss_pred -------------------EEccCCCCcCHHHHHHHHHh
Confidence 24566778899999888754
No 249
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.49 E-value=6e-05 Score=66.97 Aligned_cols=93 Identities=16% Similarity=0.115 Sum_probs=56.2
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEcc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~ 213 (484)
.....+..+|++|+|+|+.+|.+... ..+..+......+.|+++|+||+||.+... ...+..+..... ...|
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~--- 154 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-VMFI--- 154 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEE---
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-CeEE---
Confidence 34456778999999999998744221 222332222234789999999999975322 222333333322 1112
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 155 --------------------~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 155 --------------------ETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp --------------------EEBTTTTBSHHHHHHHHHHTC
T ss_pred --------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234567788999998887654
No 250
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.48 E-value=0.00012 Score=64.27 Aligned_cols=94 Identities=13% Similarity=0.052 Sum_probs=57.1
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEccc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~~~ 214 (484)
.....+..+|++|+|+|+.+|.+... ..+...+... .+..|+++|+||+||.+... .......+...+....|
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~---- 146 (170)
T 1z0j_A 71 LAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFV---- 146 (170)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE----
T ss_pred ccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEE----
Confidence 34556788999999999998754322 1122233332 35678999999999975321 12223333333332222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 147 -------------------~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 147 -------------------ETSAKNAININELFIEISRRI 167 (170)
T ss_dssp -------------------ECBTTTTBSHHHHHHHHHHHC
T ss_pred -------------------EEeCCCCcCHHHHHHHHHHHH
Confidence 345567789999998887644
No 251
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.47 E-value=0.00018 Score=77.19 Aligned_cols=119 Identities=17% Similarity=0.201 Sum_probs=74.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc-----cce----------ec------CCCCeeeeeEE--EEe-CCcEEEEecCCC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH-----VAN----------VG------ATPGLTRSMQE--VQL-DKNVKLLDCPGV 317 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~-----~~~----------v~------~~pg~Tr~~~~--~~l-~~~i~liDTPGi 317 (484)
--+|||||....|||||.-+|+-.- ... +. ...|+|-.... +.+ +..|.||||||-
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 4689999999999999999996211 000 11 11244432222 222 557999999999
Q ss_pred ccCCCCChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCC-CCHHHHHHHHHHHhC
Q 011507 318 VMLKSGENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSF-DSVDDFLQKVATVRG 383 (484)
Q Consensus 318 ~~~~~~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~-~~~~e~l~~la~~~g 383 (484)
+... .++..+|+.|+....+.|.+.- +...+.....+.+..+||+|.. .+.++.+..+....|
T Consensus 111 vDF~---~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~ 181 (548)
T 3vqt_A 111 QDFS---EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQ 181 (548)
T ss_dssp GGCS---HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHT
T ss_pred HHHH---HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcC
Confidence 8763 5677788888877766665432 2233444555777888999864 366667666665544
No 252
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.47 E-value=0.00012 Score=67.95 Aligned_cols=55 Identities=18% Similarity=0.086 Sum_probs=34.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e~ 193 (484)
....+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+...
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 155 (214)
T 2j1l_A 99 RPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS 155 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch
Confidence 34457789999999999987543221 12233333345789999999999987654
No 253
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.47 E-value=6.1e-05 Score=68.56 Aligned_cols=90 Identities=14% Similarity=0.037 Sum_probs=57.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCH-------HHHHHHHHHHHhcCCeEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-------ESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~-------e~~~~wl~~l~~~~p~v~f 210 (484)
...+..+|++|.|+|+.++.+... ..+...+....++.|+|+|+||+||.+. +....|...+. .+. .|
T Consensus 89 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~-~~ 165 (194)
T 3reg_A 89 PLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG--CVA-YI 165 (194)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT--CSC-EE
T ss_pred HhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC--CCE-EE
Confidence 345678999999999998854322 2233344444457899999999999752 23333333321 121 22
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.+++.|.+...
T Consensus 166 -----------------------~~Sa~~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 166 -----------------------EASSVAKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp -----------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------------EeecCCCCCHHHHHHHHHHHHH
Confidence 3455678899999988876554
No 254
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.47 E-value=0.00013 Score=66.17 Aligned_cols=95 Identities=14% Similarity=0.072 Sum_probs=56.8
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh---CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA---GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~---~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.+.+........+...+....|
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---- 148 (199)
T 2gf0_A 73 QRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFM---- 148 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEE----
T ss_pred HHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEE----
Confidence 3455678999999999998754222 1222223221 1367999999999998643222222222222222122
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
..|+.++.|++.|++.|.+....
T Consensus 149 -------------------~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 149 -------------------ETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp -------------------ECBTTTTBSHHHHHHHHHHHCSS
T ss_pred -------------------EEecCCCCCHHHHHHHHHHHHhh
Confidence 34556778999999988876543
No 255
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.46 E-value=9.3e-05 Score=66.56 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC--CCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELP 206 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~--~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p 206 (484)
|.......+..+|++|+|+|+.+|.+... ......+.... .+.|+|+|+||+||.+. +.+..|...+ ..+
T Consensus 83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~ 160 (195)
T 3bc1_A 83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY--GIP 160 (195)
T ss_dssp GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCC
T ss_pred HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc--CCC
Confidence 44456667889999999999998754322 11222222222 47899999999999753 2333333222 123
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+ .+|+.++.|++.|++.|.+...
T Consensus 161 ~~-------------------------~~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 161 YF-------------------------ETSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp EE-------------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred EE-------------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 22 2345677888888888766543
No 256
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.45 E-value=0.00039 Score=63.46 Aligned_cols=53 Identities=19% Similarity=0.329 Sum_probs=37.4
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHH---hCCCCceeEEeeccCCCCHH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMK---AGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~---~~~~K~~IlVLNKiDLvp~e 192 (484)
...+..+|+||+|+|+.+++......+..++.. ..++.|+|+|.||+||++.+
T Consensus 90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~ 145 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD 145 (196)
T ss_dssp HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH
T ss_pred ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh
Confidence 345567999999999999732222334444433 24578999999999998853
No 257
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.45 E-value=0.00011 Score=65.81 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=58.1
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccch
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
...+..+..+|++|+|+|+.++.+.....+...+... ..+.|+|+|+||+||.+... .| ..... ..
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~----~~~~~-~~------ 141 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GM----SEVNG-HA------ 141 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EE----EEETT-EE------
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hh----hhccC-Cc------
Confidence 3456678999999999999998876544333344332 23689999999999854210 00 00000 11
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...+|+.++.|++.|++.|.+.+.
T Consensus 142 ----------------~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 142 ----------------LIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ----------------EEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ----------------eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 124667788999999998877553
No 258
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.44 E-value=7.8e-05 Score=73.88 Aligned_cols=58 Identities=29% Similarity=0.391 Sum_probs=30.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecCCCC------eeeeeE--EEE-----eCCcEEEEecCCCcc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGATPG------LTRSMQ--EVQ-----LDKNVKLLDCPGVVM 319 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg------~Tr~~~--~~~-----l~~~i~liDTPGi~~ 319 (484)
.++|+|||.+|||||||+|+|.+......+..++ .|.... .+. ....+.++||||+..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~ 88 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 88 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhh
Confidence 5889999999999999999998863332221110 111111 111 234689999999954
No 259
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.44 E-value=7.9e-05 Score=66.44 Aligned_cols=93 Identities=16% Similarity=0.091 Sum_probs=54.8
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeE
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAV 208 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v 208 (484)
.......+..+|+||+|+|+.++.+... ......+... ..+.|+++|+||+||.+.. ....|...+ ..+.+
T Consensus 74 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~ 151 (180)
T 2g6b_A 74 RSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEY--GLPFM 151 (180)
T ss_dssp -----CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHH--TCCEE
T ss_pred HHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHc--CCeEE
Confidence 3344556789999999999998754322 1112222222 2478999999999998532 233332221 12322
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 152 -------------------------~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 152 -------------------------ETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp -------------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345677889999888876554
No 260
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.42 E-value=6.1e-05 Score=78.09 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=34.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccceecC------CCCeeeeeEEEE-------eCCcEEEEecCCCccC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVANVGA------TPGLTRSMQEVQ-------LDKNVKLLDCPGVVML 320 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~~v~~------~pg~Tr~~~~~~-------l~~~i~liDTPGi~~~ 320 (484)
.++|+|||.+|||||||||+|.+......+. .+.++. ...+. +...+.++||||+...
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC-----
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhhh
Confidence 5789999999999999999999876432220 111221 11111 1236789999999754
No 261
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.41 E-value=0.0002 Score=66.06 Aligned_cols=65 Identities=14% Similarity=0.101 Sum_probs=39.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC---HHHHHHHHH---hCCCCceeEEeeccCCCCHHHHHHHHHHHHh
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC---IDMEKMVMK---AGPDKHLVLLLNKIDLVPRESVEKWLKYLRE 203 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~---~~le~~i~~---~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~ 203 (484)
....+..+|++|+|+|+.++..+.. ..+...+.. ...+.|+|+|+||+||.+......+...+..
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~ 142 (214)
T 2fh5_B 72 LDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEK 142 (214)
T ss_dssp HHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHH
Confidence 3445889999999999987321111 112222222 1346899999999999865444444444443
No 262
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.40 E-value=0.0001 Score=65.77 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
..+..+|++|.|+|+.+|.+.... .+...+....++.|+|+|+||+||.+..
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (182)
T 3bwd_D 75 LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDK 128 (182)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCc
Confidence 456789999999999887543221 1333444433578999999999997643
No 263
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.40 E-value=0.00015 Score=66.56 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=54.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCC--CHHHHHHHHH-hCCCCceeEEeeccCCCC---HHHHHHHHHHHHhcCCeEEEEccc
Q 011507 141 KVIEVSDVILEVLDARDPLGTR--CIDMEKMVMK-AGPDKHLVLLLNKIDLVP---RESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r--~~~le~~i~~-~~~~K~~IlVLNKiDLvp---~e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
..+..+|++|.|+|+.++.+.. ...+..++.. ...+.|+|+|+||+||.. .+.+..|+. ....+ . . .
T Consensus 88 ~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~---~~~~~--~-~-~ 160 (198)
T 1f6b_A 88 NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFG---LYGQT--T-G-K 160 (198)
T ss_dssp GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHT---CTTTC--C-C-S
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhC---ccccc--c-c-c
Confidence 3467899999999999874321 1222333221 124689999999999964 334444332 11100 0 0 0
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
...++.... .........|+.++.|++.+++.|.+.
T Consensus 161 --~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 161 --GSVSLKELN-ARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp --SCCCTTTCC-SCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred --ccccccccc-CceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 000000000 000012246778889999999988654
No 264
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.39 E-value=0.00014 Score=65.66 Aligned_cols=95 Identities=12% Similarity=0.091 Sum_probs=58.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~ 211 (484)
.....+..+|++++|+|+.++.+... ..+..++.. ...+.|+++|+||+||.+......+..++.... ..+.+
T Consensus 76 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~- 154 (181)
T 1fzq_A 76 YWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQI- 154 (181)
T ss_dssp HHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEE-
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEE-
Confidence 34566789999999999998753211 122222221 124689999999999986543344433332110 01111
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...|+.++.|++.+++.|.+..
T Consensus 155 ---------------------~~~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 155 ---------------------QSCSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp ---------------------EECCTTTCTTHHHHHHHHHHTC
T ss_pred ---------------------EEccCCCCCCHHHHHHHHHHHH
Confidence 2456678889999999887654
No 265
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.39 E-value=0.00018 Score=65.42 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=57.3
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh-CCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~-~~~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p~v~f~~ 212 (484)
....+..+|++|+|+|+.++.+.. .+..+ +... ..+.|+++|+||+||.+.. ..+....+... +..-.|
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~--~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~-- 163 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFY--TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES-IGAIVV-- 163 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHH--HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT-TTCEEE--
T ss_pred hHHhhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEE--
Confidence 445677899999999999875322 22222 2222 2468999999999997522 12333333333 222222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+|+.++.|++.|++.|.+....
T Consensus 164 ---------------------~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 164 ---------------------ETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHTCC-
T ss_pred ---------------------EEeCCCCcCHHHHHHHHHHHHHh
Confidence 34556788999999998876543
No 266
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.39 E-value=0.00016 Score=64.89 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=55.6
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH--hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccch
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK--AGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~--~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
....+..+|+++.|+|+.++.+... ......+.. ...+.|+|+|+||+||.+..........+...+....|
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~----- 143 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFI----- 143 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEE-----
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEE-----
Confidence 3445677999999999998743211 111122222 12468999999999998654333333333333221122
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 144 ------------------~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 144 ------------------ETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345677888888888766553
No 267
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.38 E-value=0.00031 Score=74.11 Aligned_cols=56 Identities=16% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCC----CCHHHHH---HHHHhCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGT----RCIDMEK---MVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~----r~~~le~---~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.|.+.....+..+|++|.|+||+++... ..++... ++.. .+.+++|+|+||+||++
T Consensus 123 ~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 123 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp GGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCEEEEEECGGGGT
T ss_pred HHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcEEEEEECcCccc
Confidence 4777888899999999999999997322 1233222 2222 23467999999999987
No 268
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.38 E-value=0.00017 Score=65.28 Aligned_cols=89 Identities=13% Similarity=0.069 Sum_probs=54.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f~~ 212 (484)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.+. +....|...+ ..-.|
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~-- 162 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDL----GFEFF-- 162 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE--
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHc----CCeEE--
Confidence 345678999999999988754322 1122223322 247899999999999753 2233333322 22222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.+...
T Consensus 163 ---------------------~~Sa~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 163 ---------------------EASAKENINVKQVFERLVDVIC 184 (189)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 3455677899999988876543
No 269
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.36 E-value=0.0006 Score=68.92 Aligned_cols=89 Identities=16% Similarity=0.260 Sum_probs=59.2
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHH---HHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEEccchhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCID---MEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFKCSTQEQ 217 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~---le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~~~~~~~ 217 (484)
....+|++|+|+|+.++.+..... +...+....+++|+|+|+||+|+.+...+..+..++.... |.+
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~--------- 313 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPI--------- 313 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCE---------
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeE---------
Confidence 334699999999998775432222 2222333223799999999999998876666666554332 222
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.+.+.
T Consensus 314 ----------------~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 314 ----------------KISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ----------------ECBTTTTBTHHHHHHHHHHHHH
T ss_pred ----------------EEeCCCCcCHHHHHHHHHHHHH
Confidence 3455678899999988877654
No 270
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.36 E-value=0.00053 Score=65.88 Aligned_cols=86 Identities=12% Similarity=0.037 Sum_probs=52.6
Q ss_pred hcCEEEEEEecCCC--CCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 145 VSDVILEVLDARDP--LGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 145 ~sDvIleVlDARdP--l~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
.+|++|.|+|+.++ .+... ..+..+... ...+.|+|+|+||+||.+...+.....+.........|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~--------- 232 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVV--------- 232 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEE---------
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEE---------
Confidence 68999999999998 43211 112222211 12468999999999998766555554444432221112
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+.++.|++.|++.|.+.
T Consensus 233 --------------e~SAk~g~gv~elf~~l~~~ 252 (255)
T 3c5h_A 233 --------------ETSARSNVNVDLAFSTLVQL 252 (255)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHH
T ss_pred --------------EEECCCCCCHHHHHHHHHHH
Confidence 24556778999998887654
No 271
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.35 E-value=0.00027 Score=64.03 Aligned_cols=94 Identities=11% Similarity=0.036 Sum_probs=58.0
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELP 206 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p 206 (484)
.|.......+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.+. +....|...+ .
T Consensus 84 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~ 159 (191)
T 3dz8_A 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQL----G 159 (191)
T ss_dssp HCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHH----T
T ss_pred HHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc----C
Confidence 344455667889999999999988743211 1222233332 247899999999999643 2233333322 2
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
...| ..|+.++.|++.|++.|.+..
T Consensus 160 ~~~~-----------------------~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFF-----------------------EASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp CEEE-----------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE-----------------------EEECCCCCCHHHHHHHHHHHH
Confidence 2222 345567789999988876654
No 272
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.35 E-value=0.0002 Score=64.71 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=36.8
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~ 191 (484)
.....+..+|++|+|+|+.++.+... ..+..+.... ..+.|+|+|+||+||.+.
T Consensus 86 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 86 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred hhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 34556789999999999998754322 1223322222 347899999999999653
No 273
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.35 E-value=8.3e-05 Score=68.62 Aligned_cols=54 Identities=19% Similarity=0.212 Sum_probs=38.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e~ 193 (484)
...+..+|++|.|+|+.++.+.... .+...+....++.|+|+|+||+||.+...
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 151 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 151 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence 3456789999999999987553322 23334444445789999999999987554
No 274
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.35 E-value=0.00025 Score=62.89 Aligned_cols=93 Identities=13% Similarity=0.047 Sum_probs=55.8
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHH-hCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~-~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~ 212 (484)
......+..+|++|+|+|+.++.+.... .....+.. ...+.|+++|+||+||.+... .+....++... ..-.|
T Consensus 79 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~-- 155 (179)
T 1z0f_A 79 AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEEN-GLLFL-- 155 (179)
T ss_dssp HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHT-TCEEE--
T ss_pred hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHc-CCEEE--
Confidence 3455677899999999999988543221 11122222 225789999999999964321 22233333322 22122
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+.++.|.+.+++.|.+.
T Consensus 156 ---------------------~~Sa~~~~gi~~l~~~l~~~ 175 (179)
T 1z0f_A 156 ---------------------EASAKTGENVEDAFLEAAKK 175 (179)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHH
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHH
Confidence 34556778899988877653
No 275
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=97.34 E-value=0.00024 Score=65.14 Aligned_cols=53 Identities=25% Similarity=0.208 Sum_probs=37.6
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~ 193 (484)
..+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+||.+...
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~ 146 (201)
T 2gco_A 92 LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH 146 (201)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc
Confidence 35678999999999998754322 123344444445789999999999987644
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.33 E-value=0.00026 Score=62.16 Aligned_cols=94 Identities=13% Similarity=0.044 Sum_probs=55.6
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh---CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEcc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA---GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~---~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~ 213 (484)
....+..+|++|.|+|+.+|.+... ..+...+... .++.|+++|+||+||.+...+ ......+...+....|
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~--- 144 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFM--- 144 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEE---
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEE---
Confidence 3446678999999999998754221 2222223321 136899999999999754221 1112222222222122
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 145 --------------------~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 145 --------------------ETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp --------------------ECBTTTTBSHHHHHHHHHHTCC
T ss_pred --------------------EecCCCCcCHHHHHHHHHHHHh
Confidence 3455677899999999887654
No 277
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=97.33 E-value=0.00028 Score=65.34 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=53.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEccchhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCSTQEQR 218 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~~~~~~~ 218 (484)
.+..+|++|+|+|+.++.+.... .+..+......+.|+|+|+||+||.+... .......+...+..-.|
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~-------- 152 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYF-------- 152 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEE--------
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEE--------
Confidence 45679999999999988543221 11222222233589999999999987532 23333333333322222
Q ss_pred hhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.+++.|.....
T Consensus 153 ---------------~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 153 ---------------EISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ---------------EEBTTTTBTTTHHHHHHHHHHH
T ss_pred ---------------EEecCCCCCHHHHHHHHHHHHh
Confidence 3455677888888888876554
No 278
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.33 E-value=5.4e-05 Score=72.50 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=30.2
Q ss_pred cceEEEEecCCCCchhHHHHHhh-----cCccceecCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK-----RCHVANVGATPG 295 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~-----~~~~~~v~~~pg 295 (484)
+...+.++|.+|||||||+|.|. +.+++.+..-|+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46788999999999999999998 888877776666
No 279
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.33 E-value=0.00017 Score=63.29 Aligned_cols=89 Identities=19% Similarity=0.137 Sum_probs=52.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccch
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
...+..+|+++.|+|+.++.+... ..+..+.... .+.|+++|+||+||.+... ......+... +..-.|
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~----- 144 (168)
T 1z2a_A 72 KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR-LKLRFY----- 144 (168)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH-HTCEEE-----
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHH-cCCeEE-----
Confidence 445678999999999998753222 1222222222 5789999999999975321 1222222222 221122
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
..|+.++.|.+.|++.|.+.
T Consensus 145 ------------------~~Sa~~~~~i~~l~~~l~~~ 164 (168)
T 1z2a_A 145 ------------------RTSVKEDLNVSEVFKYLAEK 164 (168)
T ss_dssp ------------------ECBTTTTBSSHHHHHHHHHH
T ss_pred ------------------EEecCCCCCHHHHHHHHHHH
Confidence 34456778888888887654
No 280
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.33 E-value=0.00022 Score=63.29 Aligned_cols=95 Identities=17% Similarity=0.093 Sum_probs=55.9
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC----CCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEE
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG----PDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVA 209 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~----~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~ 209 (484)
......+..+|++|.|+|+.++.+... ..+..+..... .+.|+++|+||+||.+.+. .+....+.......-.
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 150 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPY 150 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCE
T ss_pred hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceE
Confidence 344456788999999999998754322 11222221111 4679999999999974332 2222233332221112
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
| ..|+.++.|.+.+++.|.+.+
T Consensus 151 ~-----------------------~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 151 F-----------------------ETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp E-----------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred E-----------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 2 345567788999988876654
No 281
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.33 E-value=0.00018 Score=69.25 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=23.2
Q ss_pred cceEEEEecCC---------CCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLP---------NVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~p---------NvGKSSLIN~L~~~ 285 (484)
..++|+|||.| |||||||+|+|.+.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred ceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 46899999999 99999999999984
No 282
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.32 E-value=0.00018 Score=67.09 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=27.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC-----ccceecCCCC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC-----HVANVGATPG 295 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~-----~~~~v~~~pg 295 (484)
...+|+|+|.+|||||||+|.|... +++.++..++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3578999999999999999999865 3444444444
No 283
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.32 E-value=0.00038 Score=61.81 Aligned_cols=90 Identities=18% Similarity=0.228 Sum_probs=53.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH--HHHHHHHHHHHh---cCC-eEEEEccch
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR--ESVEKWLKYLRE---ELP-AVAFKCSTQ 215 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~--e~~~~wl~~l~~---~~p-~v~f~~~~~ 215 (484)
.+..+|++|+|+|+.++...........+. ..+.|+++|+||+||.+. +.+..++..+.. .+. .+.+
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 147 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIF----- 147 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEE-----
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccE-----
Confidence 356799999999999875432222222222 246899999999999863 233333221110 000 0111
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...|+.++.|.+.|++.|.+.+.
T Consensus 148 -----------------~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 148 -----------------CKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp -----------------EECCSSSSHHHHHHHHHHHHHHH
T ss_pred -----------------EEEecCCCCCHHHHHHHHHHhhh
Confidence 24566778889999888876554
No 284
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.32 E-value=0.00022 Score=64.64 Aligned_cols=51 Identities=16% Similarity=0.030 Sum_probs=34.2
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHH-hCCCCceeEEeeccCCCC
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMK-AGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~-~~~~K~~IlVLNKiDLvp 190 (484)
...+..+|+||+|+|+.++.+... ......+.. ...+.|+|+|+||+||.+
T Consensus 88 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 88 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 445678999999999998754322 111122222 234789999999999965
No 285
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=97.31 E-value=0.00032 Score=64.43 Aligned_cols=94 Identities=14% Similarity=0.028 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~ 207 (484)
|.......+..+|++|+|+|+.++.+... ..+..+......+.|+|+|+||+||.+. +.+..|.. .+..
T Consensus 91 ~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----~~~~ 166 (201)
T 2hup_A 91 FRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE----HYDI 166 (201)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH----HTTC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHH----HcCC
Confidence 33345567789999999999998754221 1222222222356899999999999752 23333332 2222
Q ss_pred -EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 208 -VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 208 -v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..| ..|+.++.|++.+++.|.+...
T Consensus 167 ~~~~-----------------------~~SA~~g~gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 LCAI-----------------------ETSAKDSSNVEEAFLRVATELI 192 (201)
T ss_dssp SEEE-----------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred CEEE-----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 122 3455677889999988876554
No 286
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.31 E-value=0.00013 Score=67.25 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=35.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|+|+|+.+|.+.... .+...+....++.|+|+|+||+||.+.
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 56789999999999987543221 223334443457899999999999754
No 287
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.31 E-value=0.00017 Score=66.03 Aligned_cols=53 Identities=17% Similarity=0.089 Sum_probs=34.6
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCC
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLV 189 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLv 189 (484)
......+..+|++|+|+|+.++.+... ......+... ..+.|+|+|+||+||.
T Consensus 92 ~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~ 146 (199)
T 2p5s_A 92 SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGH
T ss_pred hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 345566788999999999998754322 1112223322 2468999999999996
No 288
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.30 E-value=0.00017 Score=65.75 Aligned_cols=100 Identities=19% Similarity=0.091 Sum_probs=54.3
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
..+..+|++|+|+|+.++.+... ..+..++.. ...+.|+|+|+||+||.+....+.+.+++.... . ....
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~------~~~~ 158 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-T------TGSQ 158 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-C------CC--
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-c------cccc
Confidence 34568999999999998853221 122222221 124689999999999975222333333332211 0 0000
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
. + .. .........|+.++.|.+.+++.|.+
T Consensus 159 ~--~-~~--~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 159 R--I-EG--QRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp ---C-CS--SCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred c--c-cc--cceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 0 00 00001124677888999999988765
No 289
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=64.70 Aligned_cols=88 Identities=11% Similarity=0.056 Sum_probs=54.0
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeEEEEccc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
..+..+|++|+|+|+.+|.+... ......+....++.|+|+|+||+||.+.. ....|...+ ..+.+
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~------ 148 (181)
T 3tw8_B 77 TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQM--GIQLF------ 148 (181)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHH--TCCEE------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHc--CCeEE------
Confidence 34678999999999998743221 11122233334578999999999997532 233332222 12322
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 149 -------------------~~Sa~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 149 -------------------ETSAKENVNVEEMFNCITELVL 170 (181)
T ss_dssp -------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred -------------------EEECCCCCCHHHHHHHHHHHHH
Confidence 2345677889999888876543
No 290
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.28 E-value=0.00051 Score=71.41 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=38.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
|.+.....+..+|++|+|+||+++..........++... +.+++|+|+||+||++
T Consensus 117 f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 117 YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-GIKHIVVAINKMDLNG 171 (434)
T ss_dssp GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-TCCEEEEEEECTTTTT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CCCeEEEEEEcCcCCc
Confidence 556667788999999999999997643222222233332 3457899999999986
No 291
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.27 E-value=0.00018 Score=66.35 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=59.3
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh-
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ- 217 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~- 217 (484)
..+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+||.+......++..+.... +.. .....
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--v~~--~~~~~~ 167 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP--VRT--DDGRAM 167 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCC--CCH--HHHHHH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCC--CCH--HHHHHH
Confidence 35678999999999988743222 123334444445789999999999987655444443321110 000 00000
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
....+. ......|+.++.|++.|++.|.+..-
T Consensus 168 ~~~~~~------~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 168 AVRIQA------YDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHTTC------SEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHhcCC------CEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 000000 01124567788899999998876543
No 292
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.27 E-value=0.00045 Score=61.25 Aligned_cols=92 Identities=16% Similarity=0.091 Sum_probs=54.7
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
..+..+|+++.|+|+.++.+... ..+..++... ..+.|+++|+||+||.+...+ ......+...+....|
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~------ 149 (181)
T 2fn4_A 76 QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYF------ 149 (181)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEE------
T ss_pred HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEE------
Confidence 34567999999999998743221 2223332322 247899999999999763221 1122222222222222
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 150 -----------------~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 150 -----------------EASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------EecCCCCCCHHHHHHHHHHHHH
Confidence 3455677899999888876554
No 293
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.27 E-value=0.00013 Score=83.72 Aligned_cols=108 Identities=17% Similarity=0.252 Sum_probs=57.8
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCcc----c-----------eecCCCCeeeeeEEEEe---CCcEEEEecCCCccCC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCHV----A-----------NVGATPGLTRSMQEVQL---DKNVKLLDCPGVVMLK 321 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~~----~-----------~v~~~pg~Tr~~~~~~l---~~~i~liDTPGi~~~~ 321 (484)
+..++|+++|.+|+|||||+|+|++... + .....+|+|.+...+.+ +..+.|+||||...-.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 3568999999999999999999987410 0 11135677776544333 3579999999975320
Q ss_pred CCChHHHHHHhccccccccCCCch----hHH---HHHhhCCcc-hhhhhcCCCCCCC
Q 011507 322 SGENDASIALRNCKRIEKLDDPVG----PVK---EILNRCPAN-LLISLYKLPSFDS 370 (484)
Q Consensus 322 ~~~~~~~~~L~~~~~i~~l~d~~~----~v~---~il~~~~~~-~l~~~~ki~~~~~ 370 (484)
......+..++.+..+.|... ... .++.....+ .+...||+|...+
T Consensus 374 ---~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 374 ---KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp ---HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCC
T ss_pred ---HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccc
Confidence 111122344444443333221 111 223333444 4567899987653
No 294
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.27 E-value=0.0002 Score=63.70 Aligned_cols=90 Identities=17% Similarity=0.069 Sum_probs=53.3
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh---CCCCc-eeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA---GPDKH-LVLLLNKIDLVPR-----ESVEKWLKYLREELPAVA 209 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~---~~~K~-~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~ 209 (484)
...+..+|++|+|+|+.++.+.... .....+... ....| +|+|+||+||.+. +....|...+ ..+.+
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~- 150 (178)
T 2hxs_A 74 DKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQEN--GFSSH- 150 (178)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCEEE-
T ss_pred hHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHc--CCcEE-
Confidence 3456789999999999987543221 111222221 12455 7899999999652 2333333222 12222
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
..|+.++.|++.+++.|.+....
T Consensus 151 ------------------------~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 151 ------------------------FVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp ------------------------EECTTTCTTHHHHHHHHHHHHTT
T ss_pred ------------------------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 23456778899999888765543
No 295
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.26 E-value=0.00022 Score=65.16 Aligned_cols=92 Identities=12% Similarity=0.036 Sum_probs=55.4
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeE
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAV 208 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v 208 (484)
.......+..+|+||+|+|+.++.+... ......+... ..+.|+|+|+||+||.+. +....|...+ ..-
T Consensus 71 ~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~ 146 (203)
T 1zbd_A 71 RTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHL----GFE 146 (203)
T ss_dssp HHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHH----TCE
T ss_pred cchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHC----CCe
Confidence 3345567789999999999998753211 1111222222 247899999999999763 2233333322 222
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.| ..|+.++.|++.+++.|.+..
T Consensus 147 ~~-----------------------~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 147 FF-----------------------EASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EE-----------------------ECBTTTTBSSHHHHHHHHHHH
T ss_pred EE-----------------------EEECCCCCCHHHHHHHHHHHH
Confidence 22 244566778888888776544
No 296
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=97.25 E-value=0.00015 Score=66.25 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=35.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
.+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+.
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRED 139 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGC
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhc
Confidence 46789999999999987543221 122334443457899999999999753
No 297
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.24 E-value=0.00042 Score=61.99 Aligned_cols=88 Identities=15% Similarity=0.150 Sum_probs=54.4
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH-hCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK-AGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~-~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~l~~~~p~v~f~ 211 (484)
...+..+|++|.|+|+.++.+... ..+..+... ...+.|+|+|+||+||.+ .+....|...+. .+.+.
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~-- 159 (183)
T 3kkq_A 84 EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN--IPYIE-- 159 (183)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT--CCEEE--
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC--CeEEE--
Confidence 345677999999999998743221 222222221 235689999999999965 233444443332 33322
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccc-cccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTS-DCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~g~~~Ll~~Lk~~~ 254 (484)
.|+. ++.|++.+++.|.+..
T Consensus 160 -----------------------~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 160 -----------------------TSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -----------------------EBCSSSCBSHHHHHHHHHHHH
T ss_pred -----------------------eccCCCCCCHHHHHHHHHHHH
Confidence 3445 6778999988887644
No 298
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=97.24 E-value=0.00016 Score=66.07 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC----CCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG----PDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~~----~~K~~IlVLNKiDLvp 190 (484)
|.......+..+|++|+|+|+.++.+... ......+.... .+.|+|+|+||+||.+
T Consensus 86 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 86 YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44445556788999999999998753211 11122222222 3789999999999987
No 299
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=97.23 E-value=0.0017 Score=67.71 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCC-------CCCHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~-------~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp 190 (484)
+.|.+.....+..+|++|.|+||+++.. .........+.. .+.| +|+|+||+||++
T Consensus 106 ~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 106 KSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLIVLINKMDDPT 169 (439)
T ss_pred HHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEEEEeecCCCcc
Confidence 4678888888999999999999998753 112222222222 2455 899999999974
No 300
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.23 E-value=0.00017 Score=65.07 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=52.9
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEE
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVA 209 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~v~ 209 (484)
......+..+|+++.|+|+.++.+... ..+...+... ..+.|+++|+||+||.+.. .+..|...+. .+.+
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~- 160 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG--IPFI- 160 (190)
T ss_dssp ------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT--CCEE-
T ss_pred HHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC--CeEE-
Confidence 344566788999999999998754221 1111122221 1368999999999998632 3333333221 2322
Q ss_pred EEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.+++.|.+...
T Consensus 161 ------------------------~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 161 ------------------------ETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp ------------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345667788888888876554
No 301
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.23 E-value=0.00037 Score=61.07 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=50.9
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh--CCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEcc
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA--GPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~--~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~~ 213 (484)
...+..+|+++.|+|+.+|.+. ..+..+ +... ..+.|+|+|+||+||.+... .......+...+....|
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--- 141 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFI--- 141 (166)
T ss_dssp ------CCEEEEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEE---
T ss_pred hhhhhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEE---
Confidence 3456789999999999988542 122222 2221 24689999999999975322 12222233333332222
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.+++.|.+..
T Consensus 142 --------------------~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 142 --------------------ETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------------ECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------------EeccCCCCCHHHHHHHHHHHH
Confidence 345677889999998887654
No 302
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.23 E-value=0.00017 Score=72.20 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=61.6
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFK 211 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~ 211 (484)
.....+..+|+||+|+|+.++.+... ..+..++... ..+.|+|+|+||+||.+......+...+...+ ..+.|
T Consensus 225 ~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~- 303 (329)
T 3o47_A 225 LWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYI- 303 (329)
T ss_dssp SHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEE-
T ss_pred HHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEE-
Confidence 34556788999999999988754321 1223332211 13689999999999987655555555554332 11122
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..+|+.++.|++.|++.|.+...
T Consensus 304 ---------------------~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 304 ---------------------QATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ---------------------EECBTTTTBTHHHHHHHHHHHHT
T ss_pred ---------------------EEEECCCCcCHHHHHHHHHHHHH
Confidence 14566788899999998876543
No 303
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.22 E-value=0.00027 Score=63.98 Aligned_cols=92 Identities=14% Similarity=-0.005 Sum_probs=53.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++|+|+|+.++.+... ......+... ..+.|+|+|+||+||.+... ......+. ..+....|
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~---- 165 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFA-ENNGLLFL---- 165 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-HHTTCEEE----
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHH-HHcCCEEE----
Confidence 3445678999999999998754221 1112222222 24688999999999975321 12222222 22222222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.|++.|.+..
T Consensus 166 -------------------~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 166 -------------------ETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------------EECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234567788888888876544
No 304
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.21 E-value=0.0004 Score=62.67 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=54.2
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHhCCCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKAGPDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~~~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++|+|+|+.+|.+.. .+..+ +... .+.|+|+|+||+|+.... ..+....++... ....|
T Consensus 110 ~~~~~~~~d~~i~v~D~~~~~s~~--~~~~~~~~i~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~-~~~~~---- 181 (208)
T 3clv_A 110 VPLYYRGATCAIVVFDISNSNTLD--RAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDN-NLLFI---- 181 (208)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHH-SCCEEEEEEECTTCC-CCSCHHHHHHHHHHT-TCEEE----
T ss_pred HHHHhcCCCEEEEEEECCCHHHHH--HHHHHHHHHHhh-CCCcEEEEEECCCcccccCCHHHHHHHHHHc-CCcEE----
Confidence 445678899999999999885422 22222 2222 248999999999943222 233344444432 22122
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 182 -------------------~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 182 -------------------QTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp -------------------EECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------EEecCCCCCHHHHHHHHHHHH
Confidence 345567788999988886654
No 305
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=97.20 E-value=0.00083 Score=70.75 Aligned_cols=89 Identities=13% Similarity=0.188 Sum_probs=58.9
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccch
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQ 215 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~~ 215 (484)
....+..+|+||+|+|+.+|.+.... ....++... .++|+|+|+||+||.+...... ..+.+. .+.+
T Consensus 306 ~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~~~--~~l~~~~~~~~i------- 375 (476)
T 3gee_A 306 SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH-PAAKFLTVANKLDRAANADALI--RAIADGTGTEVI------- 375 (476)
T ss_dssp --CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-TTSEEEEEEECTTSCTTTHHHH--HHHHHHHTSCEE-------
T ss_pred HHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-CCCCEEEEEECcCCCCccchhH--HHHHhcCCCceE-------
Confidence 45567889999999999998764211 233344433 3789999999999987655432 223332 2322
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.+...
T Consensus 376 ------------------~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 376 ------------------GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------------------ECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------------------EEEECCCCCHHHHHHHHHHHHh
Confidence 3456778899999998877554
No 306
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00017 Score=65.36 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=36.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
..+..+|++|.|+|+.+|.+.... .+...+....++.|+|+|+||+||.+..
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 138 (194)
T 2atx_A 85 LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP 138 (194)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence 346789999999999988543221 2233344434578999999999998643
No 307
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.20 E-value=0.00079 Score=68.47 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=60.1
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCHH---HHHHHHHhC-CCCceeEEeeccCCCCHHHH--HHHHHHH-Hhc-CCeE
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCID---MEKMVMKAG-PDKHLVLLLNKIDLVPRESV--EKWLKYL-REE-LPAV 208 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~~---le~~i~~~~-~~K~~IlVLNKiDLvp~e~~--~~wl~~l-~~~-~p~v 208 (484)
+.....+..+|+|++|+|+.+|.+..... +.+.+...+ .++|+|+|+||+|+.+.... ......+ +.. .+..
T Consensus 249 ~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~ 328 (364)
T 2qtf_A 249 FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIF 328 (364)
T ss_dssp HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCC
Confidence 44556688999999999998874111111 233444332 46899999999999874311 1111111 222 2221
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
.+ .++|+.++.|.+.|++.|.+.....
T Consensus 329 ~~----------------------~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 329 DV----------------------IPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp EE----------------------EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cE----------------------EEEECCCCcCHHHHHHHHHHHhccc
Confidence 21 1456678899999999998876543
No 308
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.20 E-value=0.00042 Score=61.51 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=52.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC----CCCceeEEeeccCCCCHHH---HHHHHHHHHhcCCeE
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG----PDKHLVLLLNKIDLVPRES---VEKWLKYLREELPAV 208 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~----~~K~~IlVLNKiDLvp~e~---~~~wl~~l~~~~p~v 208 (484)
.....+..+|++|+|+|+.++.+... ..+..+..... .+.|+++|+||+||.+... ......+........
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~ 153 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP 153 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe
Confidence 34456778999999999998754222 12222222211 4689999999999964321 111222222121111
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.| ..|+.++.|.+.+++.|.+..
T Consensus 154 ~~-----------------------~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 154 LF-----------------------LTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp EE-----------------------EEBTTTTBSHHHHHHHHHHHH
T ss_pred EE-----------------------EEecCCCCCHHHHHHHHHHHH
Confidence 12 234567788999988886644
No 309
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=97.20 E-value=0.00033 Score=64.24 Aligned_cols=90 Identities=16% Similarity=0.057 Sum_probs=53.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHH-hCCCCceeEEeeccCCCCHHH-HHHHHHHHHhcCCeEEEEccch
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKM---VMK-AGPDKHLVLLLNKIDLVPRES-VEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~---i~~-~~~~K~~IlVLNKiDLvp~e~-~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
..+..+|+||+|+|+.++.+.. .+..+ +.. ...+.|+|+|+||+||.+... .......+...+....|
T Consensus 76 ~~~~~~d~vilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~----- 148 (206)
T 2bcg_Y 76 SYYRGSHGIIIVYDVTDQESFN--GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFL----- 148 (206)
T ss_dssp GGGTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEE-----
T ss_pred HhccCCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEE-----
Confidence 4567899999999999875421 22222 222 234689999999999976321 11111222222221112
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.|++.|.+...
T Consensus 149 ------------------~~Sa~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 149 ------------------ETSALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp ------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2445677888998888776554
No 310
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.20 E-value=0.00029 Score=63.13 Aligned_cols=97 Identities=13% Similarity=-0.033 Sum_probs=57.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEE
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAF 210 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f 210 (484)
+.......+..+|++|+|+|+.++.+... ..+..+......+.|+++|+||+||.+... ......+... +....|
T Consensus 72 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~ 150 (186)
T 2bme_A 72 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE-NELMFL 150 (186)
T ss_dssp GHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH-TTCEEE
T ss_pred HHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHH-cCCEEE
Confidence 33445567789999999999998754322 112222222235789999999999964321 1222333322 222222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.+++.|.+...
T Consensus 151 -----------------------~~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 151 -----------------------ETSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp -----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------------------EecCCCCCCHHHHHHHHHHHHH
Confidence 2445677788888887765443
No 311
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.19 E-value=0.0004 Score=61.94 Aligned_cols=94 Identities=13% Similarity=-0.010 Sum_probs=56.8
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC-CCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~ 212 (484)
.....+..+|++|.|+|+.++.+... ..+..+..... .+.|+++|+||+||.+... ...+..++... ..-.|
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~-- 158 (187)
T 2a9k_A 82 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQW-NVNYV-- 158 (187)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEE--
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHc-CCeEE--
Confidence 34456778999999999998753211 11222222221 3689999999999975321 23334444332 22222
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 159 ---------------------~~Sa~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 159 ---------------------ETSAKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------------------EeCCCCCCCHHHHHHHHHHHHH
Confidence 3455677889999988876544
No 312
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=97.17 E-value=0.00029 Score=63.04 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=50.1
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HH-hCCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMV---MK-AGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i---~~-~~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f 210 (484)
...+..+|++|+|+|+.+|.+. ..+..++ .. ...+.|+|+|+||+||.+. +....|...+. .+ .|
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~--~~ 148 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG--IK--FM 148 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT--CE--EE
T ss_pred HHHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC--Ce--EE
Confidence 3456789999999999987542 2222222 22 2346899999999999752 33344433221 22 22
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.|++.|.+...
T Consensus 149 -----------------------~~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 149 -----------------------ETSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp -----------------------ECCC---CCHHHHHHHHHHHHH
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3455677888988888765543
No 313
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.17 E-value=0.00072 Score=60.12 Aligned_cols=85 Identities=7% Similarity=0.033 Sum_probs=52.3
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHH---HHHHh----CCCCceeEEeeccCCC-------CHHHHHHHHHHHHhcCCe
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEK---MVMKA----GPDKHLVLLLNKIDLV-------PRESVEKWLKYLREELPA 207 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~---~i~~~----~~~K~~IlVLNKiDLv-------p~e~~~~wl~~l~~~~p~ 207 (484)
.+..+|++|.|+|+.+|.+.. .+.. .+... .++.|+|+|.||+||. +.+....|...+ ...
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~--~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~---~~~ 143 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQ--AVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM---KRC 143 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH---SSE
T ss_pred HHHhCCEEEEEEECcCHHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh---cCC
Confidence 456799999999999886432 2222 22221 2468999999999993 334444444322 111
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
-.| ..|+.++.|++.+++.|.+..
T Consensus 144 ~~~-----------------------~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYY-----------------------ETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEE-----------------------EEBTTTTBTHHHHHHHHHHHH
T ss_pred eEE-----------------------EEeccccCCHHHHHHHHHHHH
Confidence 122 234567788888888776544
No 314
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.16 E-value=0.00063 Score=70.02 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp 190 (484)
|.+.....+..+|++|+|+||.++...........+.. .+.| +|+|+||+||++
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGGGCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECccccC
Confidence 66777888899999999999999764333333333333 2466 889999999995
No 315
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.16 E-value=0.00054 Score=60.19 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=53.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC-CCCceeEEeeccCCCCHH-HHHHHHHHHHhcCCeEEEEccchhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRE-SVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~~-~~K~~IlVLNKiDLvp~e-~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
.+..+|+++.|+|+.++.+... ..+..+..... .+.|+|+|+||+||.+.. ........+.+.+....|
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~------- 144 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHI------- 144 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE-------
T ss_pred hhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEE-------
Confidence 3566999999999998744222 23333332221 268999999999996432 111222223333332222
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.+++.|.+..
T Consensus 145 ----------------~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ----------------ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ----------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------------EecCccCCCHHHHHHHHHHHH
Confidence 345567789999988876644
No 316
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=97.15 E-value=0.00016 Score=67.32 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|+||.|+|+.++.+... ..+...+....++.|+|||.||+||.+
T Consensus 94 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 94 LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 35678999999999998854332 223333444446789999999999964
No 317
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.14 E-value=0.00033 Score=61.15 Aligned_cols=93 Identities=12% Similarity=-0.037 Sum_probs=55.3
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC-CCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~ 212 (484)
.....+..+|+++.|+|+.++.+... ..+..+..... .+.|+++|+||+||.+... ......++.... .-.|
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-- 144 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-VNYV-- 144 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-CEEE--
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC-CeEE--
Confidence 44556778999999999998754221 11222222221 3789999999999975321 222333333222 1122
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.+++.|.+..
T Consensus 145 ---------------------~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 145 ---------------------ETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ---------------------ECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------------------EeCCCCCCCHHHHHHHHHHHH
Confidence 244567788999988886643
No 318
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=96.21 E-value=6.8e-05 Score=68.90 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
....+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+..
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~ 150 (204)
T 3th5_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK 150 (204)
Confidence 34456789999999999988654332 2233333322368999999999998754
No 319
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.12 E-value=5.5e-05 Score=73.79 Aligned_cols=83 Identities=18% Similarity=0.315 Sum_probs=55.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcCCeEEEEccchhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
....+|+||.|+|+.++. +...+...+.+. +.|+|+|+||+|+++... ...+.+.+. .|.+
T Consensus 82 ~~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--~~~i--------- 146 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE--RNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLG--CPVI--------- 146 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH--HHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHT--SCEE---------
T ss_pred hhcCCCEEEEEecCCChH--HHHHHHHHHHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcC--CCEE---------
Confidence 347899999999999842 333344444443 689999999999976532 233333221 3433
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.....
T Consensus 147 ----------------~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 147 ----------------PLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ----------------ECCCGGGHHHHHHHHHHHTCCC
T ss_pred ----------------EEEcCCCCCHHHHHHHHHHHHh
Confidence 3455677889999998887654
No 320
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.12 E-value=0.00028 Score=61.58 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=35.4
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCH
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~ 191 (484)
....+..+|+++.|+|+.++.+... ..+..++... ..+.|+++|+||+||.+.
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 3456788999999999998754211 1222222221 247899999999999753
No 321
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.12 E-value=7e-05 Score=72.43 Aligned_cols=81 Identities=20% Similarity=0.250 Sum_probs=53.1
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccchhhhhhc
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRANL 221 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~~~~~~~~ 221 (484)
..+|+||.|+|+.++ .++..+...+.+ .+.|+|+|+||+|+++...+......|.+. .|.+
T Consensus 82 ~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi------------- 144 (256)
T 3iby_A 82 LEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVI------------- 144 (256)
T ss_dssp SCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEE-------------
T ss_pred CCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEE-------------
Confidence 789999999999984 223334344433 368999999999997654221112223332 2333
Q ss_pred CCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.+|+..+.|.+.|++.|.+.
T Consensus 145 ------------~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 145 ------------PIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------------ECBGGGTBSHHHHHHHHHTC
T ss_pred ------------EEECCCCCCHHHHHHHHHhh
Confidence 34567788999999998775
No 322
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.10 E-value=0.00099 Score=72.07 Aligned_cols=99 Identities=18% Similarity=0.263 Sum_probs=65.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
|..++...+..+|.+|.|+||.++.............. .+.|+|+|+||+||.... .......+.+.+..- +
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--~~ipiIvviNKiDl~~a~-~~~v~~el~~~lg~~---~-- 157 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--QDLVIIPVINKIDLPSAD-VDRVKKQIEEVLGLD---P-- 157 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--TTCEEEEEEECTTSTTCC-HHHHHHHHHHTSCCC---G--
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--CCCCEEEEEeccCccccC-HHHHHHHHHHhhCCC---c--
Confidence 66678888999999999999999865332222222222 468999999999997643 233344444443210 0
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
......|+.++.|.+.|++.|.++.+.
T Consensus 158 ---------------~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 158 ---------------EEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp ---------------GGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred ---------------ccEEEEEeecCCCchHHHHHHHHhccc
Confidence 012245677889999999999888764
No 323
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.06 E-value=0.00033 Score=65.18 Aligned_cols=89 Identities=12% Similarity=0.120 Sum_probs=54.1
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRAN 220 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~-~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~~ 220 (484)
.+..+|++|+|+|+.++.+... ......+....++.|+|+|+||+||.+.........+.+... .-.|
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~---------- 152 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYY---------- 152 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHT-CEEE----------
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcC-CEEE----------
Confidence 4558999999999998754322 122223333335789999999999986543222222222221 1112
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.+|+.++.|++.+++.|.+..
T Consensus 153 -------------~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 153 -------------DISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------------ECBGGGTBTTTHHHHHHHHHH
T ss_pred -------------EEeCCCCCCHHHHHHHHHHHH
Confidence 345567788888888877644
No 324
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=97.05 E-value=0.00022 Score=74.83 Aligned_cols=88 Identities=22% Similarity=0.304 Sum_probs=56.9
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhh
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQ 217 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~ 217 (484)
..+..+..+|+||+|+|+.+|+......+.+.+ ..+|+|+|+||+||.+...+.. +..+....+.+
T Consensus 296 ~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl~~~~~~~~-~~~~~~~~~~i--------- 361 (462)
T 3geh_A 296 RSRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVEKQLITS-LEYPENITQIV--------- 361 (462)
T ss_dssp ---CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTSSCGGGSTT-CCCCTTCCCEE---------
T ss_pred HHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCCCcchhhHH-HHHhccCCcEE---------
Confidence 344567789999999999998765444444433 3589999999999987654320 00000111222
Q ss_pred hhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 218 RANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|.+.|++.|.+...
T Consensus 362 ----------------~iSAktg~Gi~eL~~~i~~~~~ 383 (462)
T 3geh_A 362 ----------------HTAAAQKQGIDSLETAILEIVQ 383 (462)
T ss_dssp ----------------EEBTTTTBSHHHHHHHHHHHHT
T ss_pred ----------------EEECCCCCCHHHHHHHHHHHHh
Confidence 3556778899999999887654
No 325
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=97.04 E-value=0.00047 Score=76.37 Aligned_cols=57 Identities=19% Similarity=0.258 Sum_probs=41.6
Q ss_pred HHHHHHHHh-hhcCEEEEEEecCCCCCCCCH-HHHHHHHHhCCCCceeEEeeccCCCCHHH
Q 011507 135 FYKELVKVI-EVSDVILEVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRES 193 (484)
Q Consensus 135 ~~~el~kvi-e~sDvIleVlDARdPl~~r~~-~le~~i~~~~~~K~~IlVLNKiDLvp~e~ 193 (484)
+.+.+.+.+ ..+|+||.|+||+.+++.... .+.+.+.. .++|+|+|+||+|++++..
T Consensus 176 i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlNKiDlv~~~~ 234 (772)
T 3zvr_A 176 IRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGT 234 (772)
T ss_dssp HHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEECTTSSCTTC
T ss_pred HHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEeCcccCCcch
Confidence 333444444 579999999999998876654 45555532 3689999999999997653
No 326
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.03 E-value=0.00049 Score=62.29 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=52.6
Q ss_pred HhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHhC--CCCceeEEeeccCCC-------CHHHHHHHHHHHHhcCCeEEEE
Q 011507 142 VIEVSDVILEVLDARDPLGTRC-IDMEKMVMKAG--PDKHLVLLLNKIDLV-------PRESVEKWLKYLREELPAVAFK 211 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~-~~le~~i~~~~--~~K~~IlVLNKiDLv-------p~e~~~~wl~~l~~~~p~v~f~ 211 (484)
.+..+|++|.|+|+.++.+... ......+.... .+.|+|+|.||+||. ..+....|... +....|.
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~----~~~~~~~ 157 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD----LKRCTYY 157 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH----TTTCEEE
T ss_pred eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH----cCCCeEE
Confidence 5567999999999998754322 12222222221 357999999999993 33344444432 2211221
Q ss_pred ccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 212 CSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.+++.|....
T Consensus 158 ----------------------e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 158 ----------------------ETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp ----------------------EEBTTTTBTHHHHHHHHHHHH
T ss_pred ----------------------EecCCCCCCHHHHHHHHHHHH
Confidence 234567788999988876544
No 327
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.02 E-value=0.00084 Score=71.63 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=46.3
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH---HHHHHHHHH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE---SVEKWLKYL 201 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e---~~~~wl~~l 201 (484)
|..+....+..+|.+|.|+||.++.......+...+.. .+.|+|+|+||+|+.... .+..+.+.+
T Consensus 95 f~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~Dl~~~~~~~~l~ei~~~l 162 (528)
T 3tr5_A 95 FTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMDRDTRPSIELLDEIESIL 162 (528)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTTSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCCCccccHHHHHHHHHHhh
Confidence 34467778899999999999999876555555554443 368999999999997543 344444444
No 328
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.00073 Score=61.42 Aligned_cols=89 Identities=16% Similarity=-0.009 Sum_probs=53.7
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEE
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f 210 (484)
....+..+|++|+|+|+.+|.+... ..+..+.... ..+.|+|+|+||+||.+. +....|...+ ..-.|
T Consensus 92 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 167 (196)
T 2atv_A 92 REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL----ACAFY 167 (196)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH----TSEEE
T ss_pred hhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh----CCeEE
Confidence 3445678999999999998754322 1122222211 247899999999999753 2233333222 22222
Q ss_pred EccchhhhhhcCCCccCCCCCCccccccccc-CHHHHHHHHHhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCL-GAETLIKLLKNYS 254 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-g~~~Ll~~Lk~~~ 254 (484)
..|+.++. |++.+++.|.+..
T Consensus 168 -----------------------~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 168 -----------------------ECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp -----------------------ECCTTTCTTCHHHHHHHHHHHH
T ss_pred -----------------------EECCCcCCcCHHHHHHHHHHHH
Confidence 24456677 8899888876644
No 329
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.97 E-value=0.00037 Score=64.36 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=56.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCC-HHHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCe
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRC-IDMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~-~~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~ 207 (484)
|.......+..+|++|+|+|+.++.+... ......+... ..+.|+|+|+||+||... +....|...+ ..+.
T Consensus 88 ~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~ 165 (201)
T 2ew1_A 88 FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQ--DMYY 165 (201)
T ss_dssp GHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHH--TCCE
T ss_pred HHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHc--CCEE
Confidence 33345566788999999999998754322 1111222222 346789999999999743 2333333221 1222
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+ ..|+.++.|++.|++.|.+...
T Consensus 166 ~-------------------------~~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 166 L-------------------------ETSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp E-------------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred E-------------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2 2445677888888887765543
No 330
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=96.96 E-value=0.0023 Score=65.10 Aligned_cols=95 Identities=11% Similarity=0.074 Sum_probs=57.8
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCce-eEEee-ccCCCCHHHHHHHHHHHHhcC-----Ce
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHL-VLLLN-KIDLVPRESVEKWLKYLREEL-----PA 207 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~-IlVLN-KiDLvp~e~~~~wl~~l~~~~-----p~ 207 (484)
|.+++...+..+|++|.|+| .+...........++... +.|. |+|+| |+|| +.+.+......+++.+ ..
T Consensus 73 f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~ 148 (370)
T 2elf_A 73 TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQD 148 (370)
T ss_dssp CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTT
T ss_pred HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCc
Confidence 66778888899999999999 543321111222222322 4566 89999 9999 7654443333333221 11
Q ss_pred EEEEccchhhhhhcCCCccCCCCCCcc--ccccc---ccCHHHHHHHHHhhhh
Q 011507 208 VAFKCSTQEQRANLGWKSSKTAKPSNI--LQTSD---CLGAETLIKLLKNYSR 255 (484)
Q Consensus 208 v~f~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~---~~g~~~Ll~~Lk~~~~ 255 (484)
++| .+ .|+.. +.|.+.|++.|.++.+
T Consensus 149 ~~i----------------------i~~~~SA~~~~~g~gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 149 WEC----------------------ISLNTNKSAKNPFEGVDELKARINEVAE 179 (370)
T ss_dssp CEE----------------------EECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred eEE----------------------EecccccccCcCCCCHHHHHHHHHhhcc
Confidence 222 13 45566 7899999988887765
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.96 E-value=0.00044 Score=60.74 Aligned_cols=86 Identities=21% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHH-hCCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKM---VMK-AGPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAF 210 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~---i~~-~~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f 210 (484)
...+..+|++|.|+|+.++.+.. .+..+ +.. ...+.|+++|+||+||.+. +....|. + .+....|
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~-~~~~~~~ 146 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQ--KVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYA---E-SVGAKHY 146 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHH--HHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHH---H-HTTCEEE
T ss_pred HHHhccCCEEEEEEECcCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHH---H-HcCCeEE
Confidence 34567899999999998875321 22222 222 1246889999999999753 2233332 2 2222122
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|.+..
T Consensus 147 -----------------------~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 147 -----------------------HTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp -----------------------EEBTTTTBSHHHHHHHHHHHH
T ss_pred -----------------------EecCCCCCCHHHHHHHHHHHH
Confidence 234567788999998886543
No 332
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=96.96 E-value=0.00098 Score=61.00 Aligned_cols=92 Identities=14% Similarity=0.014 Sum_probs=54.5
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+..+|++|+|+|+.++.+... ..+..+......+.|+|+|+||+||.+... ......+.... ....|
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~---- 165 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQEN-ELMFL---- 165 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-TCEEE----
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHc-CCEEE----
Confidence 4456788999999999998754322 112222222234789999999999964321 22333333322 22122
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.+|+.++.|++.+++.|.+..
T Consensus 166 -------------------~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 166 -------------------ETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp -------------------EECTTTCTTHHHHHHHHHHHH
T ss_pred -------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 234567778888888776544
No 333
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.95 E-value=0.00032 Score=67.74 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=52.8
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccchhhhhhc
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRANL 221 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~~~~~~~~ 221 (484)
..+|+||.|+|+.++. ++..+...+.+ .+.|+|+|+||+|+.....+......|.+. .|.+
T Consensus 82 ~~~d~ii~V~D~t~~~--~~~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi------------- 144 (258)
T 3a1s_A 82 GDADLVILVADSVNPE--QSLYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVV------------- 144 (258)
T ss_dssp SCCSEEEEEEETTSCH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEE-------------
T ss_pred cCCCEEEEEeCCCchh--hHHHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEE-------------
Confidence 6899999999999853 22223333333 378999999999996543221122223322 2332
Q ss_pred CCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 222 GWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 222 ~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+..+.|.+.|++.|.+.+.
T Consensus 145 ------------~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 145 ------------FTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------EEEeeCCcCHHHHHHHHHHHhh
Confidence 3455677899999998877654
No 334
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=96.95 E-value=0.0011 Score=64.30 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=36.2
Q ss_pred cCEEEEEEecC-CCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHH
Q 011507 146 SDVILEVLDAR-DPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (484)
Q Consensus 146 sDvIleVlDAR-dPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~ 202 (484)
+|++|+++|+. .++...+..+.+.+. .++|+|+|+||+|+++.+.+......+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~~~~~~i~ 170 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIM 170 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHHHHHHHHH
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHHHHHHHHH
Confidence 78888888544 455544444444443 3789999999999998776655444443
No 335
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.95 E-value=0.00074 Score=60.72 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.+..+|++|.|+|+.++.+... ..+...+....++.|+|+|+||+||.+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 4678999999999998754322 122233444345789999999999974
No 336
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00043 Score=64.57 Aligned_cols=89 Identities=13% Similarity=0.030 Sum_probs=51.0
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHH---HHHh-CCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKM---VMKA-GPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~---i~~~-~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~ 214 (484)
..+..+|++|+|+|+.++.+.. .+..+ +... ..+.|+|+|+||+||.+... ......+.. .+....|
T Consensus 81 ~~~~~~d~vilV~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~---- 153 (223)
T 3cpj_B 81 AYYRGAVGALIVYDISKSSSYE--NCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ-ENQLLFT---- 153 (223)
T ss_dssp GGTTTCCEEEEEEC-CCHHHHH--HHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHH-HTTCEEE----
T ss_pred HHhccCCEEEEEEeCCCHHHHH--HHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHH-HcCCEEE----
Confidence 3457899999999999875432 22222 2222 34689999999999975321 112222222 2222222
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.+|+.++.|++.|++.|.+...
T Consensus 154 -------------------~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 154 -------------------ETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp -------------------ECCCC-CCCHHHHHHHHHHHHT
T ss_pred -------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 3455677899999988876554
No 337
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.91 E-value=0.00072 Score=59.65 Aligned_cols=88 Identities=10% Similarity=0.032 Sum_probs=51.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh--CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeEEEEc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~-~le~~i~~~--~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v~f~~ 212 (484)
..+..+|+++.|+|+.++.+.... .+...+... ..+.|+|+|+||+||.+.. ....|... +....|
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~----~~~~~~-- 146 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV----FDCKFI-- 146 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH----HTSEEE--
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHH----cCCeEE--
Confidence 345679999999999987542211 111223222 2368999999999997532 22333222 121122
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|.+.|++.|.+...
T Consensus 147 ---------------------~~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 147 ---------------------ETSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp ---------------------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------------------EEecCCCCCHHHHHHHHHHHHH
Confidence 3455677899999988876543
No 338
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.90 E-value=0.00042 Score=71.93 Aligned_cols=92 Identities=15% Similarity=0.167 Sum_probs=59.2
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccch
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
.+....++..+|++|+|+|+ .+ ......+...+.+. +.|+|+|+||+||.+.... .....+.+.+..
T Consensus 104 ~~~~~~~l~~aD~vllVvD~-~~-~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~-~~~~~l~~~~g~-------- 170 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDS-AP-TPYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAE-ELKGLYESRYEA-------- 170 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSS-SC-CHHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCT-HHHHHSSCCTTC--------
T ss_pred HHHHHHHHhcCCEEEEEEeC-CC-hHHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHH-HHHHHHHHHcCC--------
Confidence 34566788899999999999 22 22223333444443 7899999999999865433 233333333221
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.....|+.++.|.+.|++.|.+..+
T Consensus 171 ---------------~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 171 ---------------KVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp ---------------CCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred ---------------CEEEEECCCCCCHHHHHHHHHHhhh
Confidence 1124566778899999999887664
No 339
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=96.89 E-value=0.00063 Score=71.74 Aligned_cols=95 Identities=12% Similarity=0.022 Sum_probs=58.5
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHHHHHHHHHHHhcC---CeEEEEc
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRESVEKWLKYLREEL---PAVAFKC 212 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~---p~v~f~~ 212 (484)
....+..+|+||+|+|+.++.+... ..+..++... ..++|+|+|+||+||.+..........+...+ ....+
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-- 460 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYV-- 460 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEE--
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEE--
Confidence 4456788999999999998743211 1233332211 14789999999999976433333333332211 11111
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..+|+.++.|++.|++.|.+...
T Consensus 461 --------------------~~~SA~~g~gi~~l~~~l~~~~~ 483 (497)
T 3lvq_E 461 --------------------QPSCATSGDGLYEGLTWLTSNYK 483 (497)
T ss_dssp --------------------EECBTTTTBTHHHHHHHHHHHCC
T ss_pred --------------------EEEECCCCCCHHHHHHHHHHHHH
Confidence 24567788999999999887654
No 340
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.88 E-value=0.0016 Score=72.07 Aligned_cols=121 Identities=13% Similarity=0.179 Sum_probs=70.8
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCc-----cceec------------CCCCeeeeeEEEEe----------CCcEEEE
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCH-----VANVG------------ATPGLTRSMQEVQL----------DKNVKLL 312 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~-----~~~v~------------~~pg~Tr~~~~~~l----------~~~i~li 312 (484)
.+--+|+|||....|||||.-+|+-.- ...|. ...|+|-...-+.+ +..|.||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 344689999999999999999997321 11111 11244443222221 2358899
Q ss_pred ecCCCccCCCCChHHHHHHhccccccccCCCchh----HHHHHhh---CCcchhhhhcCCCCC-CCHHHHHHHHHHHhC
Q 011507 313 DCPGVVMLKSGENDASIALRNCKRIEKLDDPVGP----VKEILNR---CPANLLISLYKLPSF-DSVDDFLQKVATVRG 383 (484)
Q Consensus 313 DTPGi~~~~~~~~~~~~~L~~~~~i~~l~d~~~~----v~~il~~---~~~~~l~~~~ki~~~-~~~~e~l~~la~~~g 383 (484)
||||-+.. ..++..+|+.|+....+.|.+.- ...+++. ..-+.+..+||+|.. .+....+..+....+
T Consensus 91 DTPGHvDF---~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~ 166 (709)
T 4fn5_A 91 DTPGHVDF---TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLG 166 (709)
T ss_dssp CCCSCTTC---HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHC
T ss_pred eCCCCccc---HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhcc
Confidence 99999866 25677788888877666665432 2233333 334567778999864 355555555554443
No 341
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.88 E-value=0.0002 Score=76.54 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=70.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHH---hcC-CeEEEEccc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLR---EEL-PAVAFKCST 214 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e--~~~~wl~~l~---~~~-p~v~f~~~~ 214 (484)
..+..+|++|+|+||.++...........+. ..+.|+|+|+||+|+.+.. .+...+..+. ..+ ..+.
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~----- 143 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQ----- 143 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEE-----
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCce-----
Confidence 3456799999999999965443333333333 2468999999999997532 1112221110 011 1112
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhccc--------------------ccceEEEEecCCCCc
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSHEI--------------------KKSITVGVIGLPNVG 274 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~~~--------------------~~~~~V~vvG~pNvG 274 (484)
....|+.++.|.+.|++.|..++..... ...+..++|+.++++
T Consensus 144 -----------------iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~ 206 (537)
T 3izy_P 144 -----------------AVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLR 206 (537)
T ss_dssp -----------------ECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCS
T ss_pred -----------------EEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEE
Confidence 2356778889999999988776432110 124566888888888
Q ss_pred hhHHH
Q 011507 275 KSSLI 279 (484)
Q Consensus 275 KSSLI 279 (484)
+++.+
T Consensus 207 ~Gd~v 211 (537)
T 3izy_P 207 KGSIL 211 (537)
T ss_dssp SEEEE
T ss_pred cCCEE
Confidence 88754
No 342
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.87 E-value=0.00045 Score=75.50 Aligned_cols=116 Identities=17% Similarity=0.218 Sum_probs=70.0
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc-----cceecC------C------CCeeeeeEEEE---eCCcEEEEecCCCccCCC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH-----VANVGA------T------PGLTRSMQEVQ---LDKNVKLLDCPGVVMLKS 322 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~-----~~~v~~------~------pg~Tr~~~~~~---l~~~i~liDTPGi~~~~~ 322 (484)
.+|||||....|||||.-+|+-.- ...|.. . .|+|-....+. -+..|.||||||-+..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF-- 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF-- 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH--
Confidence 368999999999999999997221 111111 0 13443322222 2567899999998865
Q ss_pred CChHHHHHHhccccccccCCCchh-------HHHHHhhCCcchhhhhcCCCCCC-CHHHHHHHHHHH
Q 011507 323 GENDASIALRNCKRIEKLDDPVGP-------VKEILNRCPANLLISLYKLPSFD-SVDDFLQKVATV 381 (484)
Q Consensus 323 ~~~~~~~~L~~~~~i~~l~d~~~~-------v~~il~~~~~~~l~~~~ki~~~~-~~~e~l~~la~~ 381 (484)
..++..+|+.|+....+.|.+.- +...+....-+.+..+||+|... +.+..+..+...
T Consensus 81 -~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~ 146 (638)
T 3j25_A 81 -LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEK 146 (638)
T ss_dssp -HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHT
T ss_pred -HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHH
Confidence 24677788888877666665432 22233333445677789998643 445555544433
No 343
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.87 E-value=0.0059 Score=55.76 Aligned_cols=90 Identities=14% Similarity=0.167 Sum_probs=58.5
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
..+|.++.|.|+.++.......+..++.. .+.|.++|.||+|+.+... +......+.+....+.+
T Consensus 107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~--------- 175 (210)
T 1pui_A 107 QSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV--------- 175 (210)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE---------
T ss_pred hcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce---------
Confidence 57899999999999875433345555543 3678899999999997643 22233333322112222
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
.+.|+.+..|.+.|++.|.++...+
T Consensus 176 -------------~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 176 -------------ETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp -------------EECBTTTTBSHHHHHHHHHHHHC--
T ss_pred -------------EEEeecCCCCHHHHHHHHHHHHhhc
Confidence 2456678889999999998876643
No 344
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.87 E-value=0.00043 Score=72.02 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.0
Q ss_pred ceEEEEecCCCCchhHHHHHhhc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+..|+|+|.|||||||+++.|.+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 345
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.87 E-value=0.00032 Score=64.92 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.8
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+||.+
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 4678999999999998754322 122233444345789999999999974
No 346
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.86 E-value=0.00099 Score=60.60 Aligned_cols=94 Identities=13% Similarity=-0.014 Sum_probs=55.0
Q ss_pred HHHHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHh-CCCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEc
Q 011507 138 ELVKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKA-GPDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 138 el~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~-~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~ 212 (484)
.....+..+|++|.|+|+.++.+... ..+..+.... ..+.|+|+|+||+||.+... ......+..... ...|
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~-- 154 (206)
T 2bov_A 78 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-VNYV-- 154 (206)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-CEEE--
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC-CeEE--
Confidence 34456778999999999998753211 1222222221 13789999999999975321 223333333222 1122
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.|++.|.+...
T Consensus 155 ---------------------~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 155 ---------------------ETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ---------------------EECTTTCTTHHHHHHHHHHHHH
T ss_pred ---------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2345667788888887765543
No 347
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.83 E-value=0.00062 Score=65.22 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=58.9
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCC---CCceeEEee-ccCCCCHHHHHHHHH---------HH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGP---DKHLVLLLN-KIDLVPRESVEKWLK---------YL 201 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~---~K~~IlVLN-KiDLvp~e~~~~wl~---------~l 201 (484)
+.+.++..+..+|+||+|+|+.. +......+.+.+....+ .+|.|+|+| |+||.+. .+..|+. .+
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHH
Confidence 35556667788999999999986 33323334344443211 467888888 9999854 2333322 11
Q ss_pred HhcCCeE-EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 202 REELPAV-AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 202 ~~~~p~v-~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
....... .|. ...+|+..+.|++.|++.|......
T Consensus 173 ~~~~~~~~~~~--------------------~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 173 AACGGRICAFN--------------------NRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHTTTCEEECC--------------------TTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEec--------------------CcccccccHHHHHHHHHHHHHHHHh
Confidence 1111101 110 1245667788999999888776654
No 348
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=96.83 E-value=0.0024 Score=65.48 Aligned_cols=56 Identities=18% Similarity=0.159 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp 190 (484)
..|.+++...+..+|++|.|+||++............+.. .+.| +|+|+||+|+++
T Consensus 77 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 77 ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKADAVQ 133 (397)
T ss_dssp HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGGGCS
T ss_pred HHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcccCC
Confidence 3577788888899999999999998654322222233333 2566 689999999995
No 349
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.79 E-value=0.0024 Score=58.27 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=53.0
Q ss_pred HhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhC-CCCceeEEeeccCCCCHHH--HHHHHHHHHhcCCeEEEEccchh
Q 011507 142 VIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAG-PDKHLVLLLNKIDLVPRES--VEKWLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~--~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~~p~v~f~~~~~~ 216 (484)
.+..+|++|.|+|+.++.+... .++..+..... .+.|+|+|.||+||.+... .+....+. +.+....|
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a-~~~~~~~~------ 165 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA-GTLSCKHI------ 165 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHH-HHTTCEEE------
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHH-HHhCCEEE------
Confidence 4568999999999998754322 22322222111 3689999999999975321 12222222 22222222
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+..+.|++.+++.|-+...
T Consensus 166 -----------------e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 166 -----------------ETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp -----------------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------EEcCCCCCCHHHHHHHHHHHHH
Confidence 2455677889998888766543
No 350
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.79 E-value=0.00034 Score=62.02 Aligned_cols=80 Identities=28% Similarity=0.340 Sum_probs=49.5
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH----HHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES----VEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~----~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
..+|+++.|+|+.++.. ...+...+.. .+.|+|+|.||+||..... ...|...+. .+.+
T Consensus 80 ~~~~~~i~v~D~~~~~~--~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~----------- 142 (165)
T 2wji_A 80 EKPDLVVNIVDATALER--NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVV----------- 142 (165)
T ss_dssp HCCSEEEEEEETTCHHH--HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred CCCCEEEEEecCCchhH--hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhC--CCEE-----------
Confidence 47999999999986421 1112222232 3689999999999964321 233433321 2222
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.|++.|.+..
T Consensus 143 --------------~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 143 --------------PLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp --------------ECBGGGTBSHHHHHHHHHHHT
T ss_pred --------------EEEcCCCCCHHHHHHHHHHHh
Confidence 345677889999998886643
No 351
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.78 E-value=0.0003 Score=68.18 Aligned_cols=85 Identities=22% Similarity=0.376 Sum_probs=53.5
Q ss_pred hhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc--CCeEEEEccchhhhhh
Q 011507 143 IEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE--LPAVAFKCSTQEQRAN 220 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~--~p~v~f~~~~~~~~~~ 220 (484)
...+|+||.|+|+.++. ++..+...+... +..|+++|+||+||++...+......+.+. .|.+
T Consensus 79 ~~~~d~vi~v~D~~~~~--~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~------------ 143 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM--RNLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVI------------ 143 (271)
T ss_dssp TTCCSEEEEEEEGGGHH--HHHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEE------------
T ss_pred ccCCcEEEEEecCCcch--hhHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEE------------
Confidence 36899999999999862 232333333332 238999999999997654322112233332 2332
Q ss_pred cCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 221 LGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 221 ~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
++|+..+.|.+.|++.+.....
T Consensus 144 -------------~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 144 -------------PTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp -------------ECBGGGTBTHHHHHHHHHHHHH
T ss_pred -------------EEEeCCCCCHHHHHHHHHHHHh
Confidence 3455677899999998877554
No 352
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=96.76 E-value=0.0005 Score=67.77 Aligned_cols=52 Identities=19% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCH--HHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCI--DMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~--~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
...+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+.
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 3456789999999999987543221 122344444457899999999999764
No 353
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.75 E-value=0.002 Score=65.15 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=55.5
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
..++..+|+||+|+|+...... ..+...+ ..+|.|+|+||+|+.+......+...+...+..... .
T Consensus 187 ~~~~~~aD~vl~V~d~~~~~~~--~~l~~~~----~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~--------~ 252 (355)
T 3p32_A 187 VAVANMVDTFVLLTLARTGDQL--QGIKKGV----LELADIVVVNKADGEHHKEARLAARELSAAIRLIYP--------R 252 (355)
T ss_dssp HHHHTTCSEEEEEEESSTTCTT--TTCCTTS----GGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHST--------T
T ss_pred HHHHHhCCEEEEEECCCCCccH--HHHHHhH----hhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccc--------c
Confidence 3456899999999997643221 1111111 136889999999998776555444444432100000 0
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..+| ......+|+.++.|.+.|++.|..+..
T Consensus 253 ~~~~-----~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 253 EALW-----RPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCSC-----CCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCC-----CCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000 001123566788999999999988664
No 354
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.75 E-value=0.00083 Score=61.38 Aligned_cols=86 Identities=15% Similarity=0.029 Sum_probs=52.2
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHh-----CCCCceeEEeeccCCCCHH-----HHHHHHHHHHhcCCeEEE
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKA-----GPDKHLVLLLNKIDLVPRE-----SVEKWLKYLREELPAVAF 210 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~-----~~~K~~IlVLNKiDLvp~e-----~~~~wl~~l~~~~p~v~f 210 (484)
..+..+|++|.|+|+.++.+. ..+..++... ..+.|+|+|+||+||.+.. ....|...+ ....|
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~~~ 164 (201)
T 3oes_A 91 SFIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESW----GATFM 164 (201)
T ss_dssp GGTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHH----TCEEE
T ss_pred HHHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHh----CCeEE
Confidence 345679999999999987432 2222322221 2367999999999997532 223333222 22222
Q ss_pred EccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 211 KCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
..|+.++.|++.+++.|.+...
T Consensus 165 -----------------------~~Sa~~~~~v~~l~~~l~~~i~ 186 (201)
T 3oes_A 165 -----------------------ESSARENQLTQGIFTKVIQEIA 186 (201)
T ss_dssp -----------------------ECCTTCHHHHHHHHHHHHHHHH
T ss_pred -----------------------EEeCCCCCCHHHHHHHHHHHHH
Confidence 2455677788888888876554
No 355
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.74 E-value=0.0027 Score=60.49 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHH-------HHHHhCCCCceeEEeeccCCCCHHHH
Q 011507 136 YKELVKVIEVSDVILEVLDARDPLGTRCIDMEK-------MVMKAGPDKHLVLLLNKIDLVPRESV 194 (484)
Q Consensus 136 ~~el~kvie~sDvIleVlDARdPl~~r~~~le~-------~i~~~~~~K~~IlVLNKiDLvp~e~~ 194 (484)
...+...+.. |+||.|+|+....... .+.. .... .+.|.++|+||+|+.+...+
T Consensus 129 ~~~~~~~~~~-~~iv~vvD~~~~~~~~--~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~ 189 (262)
T 1yrb_A 129 GVRLMENLPY-PLVVYISDPEILKKPN--DYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEK 189 (262)
T ss_dssp HHHHHHTSSS-CEEEEEECGGGCCSHH--HHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHH
T ss_pred HHHHHHHHhh-ceEEeccchhhhcCHH--HHHHHHHHHHHHhcc--cCCCeEEEEecccccccccH
Confidence 3445556666 9999999997654321 2211 1111 25899999999999986543
No 356
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.74 E-value=0.0013 Score=70.58 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhC-CCCceeEEeeccCCCCHHHHHHHHHHHH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-PDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~-~~K~~IlVLNKiDLvp~e~~~~wl~~l~ 202 (484)
|.......+..+|+||+|+|+..+-.+ .....++.... .+.|+++|+||+|+++.+.+......+.
T Consensus 178 f~~~~~~~l~~aD~il~VvDa~~~~~~--~~~~~~l~~l~~~~~pvilVlNK~Dl~~~~el~~~~~~l~ 244 (550)
T 2qpt_A 178 FPAVLRWFAERVDLIILLFDAHKLEIS--DEFSEAIGALRGHEDKIRVVLNKADMVETQQLMRVYGALM 244 (550)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSCCCC--HHHHHHHHHTTTCGGGEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEEeCCcCCCC--HHHHHHHHHHHhcCCCEEEEEECCCccCHHHHHHHHHHhh
Confidence 556677788999999999999875222 22333333221 2578999999999999887776666554
No 357
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.73 E-value=0.0021 Score=59.36 Aligned_cols=64 Identities=14% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHhhhcCEEEEEEecC-CCCCCC--CHHHHHHHHH----hCCCCceeEEeeccCCCCHHHHHHHHHHHH
Q 011507 139 LVKVIEVSDVILEVLDAR-DPLGTR--CIDMEKMVMK----AGPDKHLVLLLNKIDLVPRESVEKWLKYLR 202 (484)
Q Consensus 139 l~kvie~sDvIleVlDAR-dPl~~r--~~~le~~i~~----~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~ 202 (484)
+...+..+|++|+|+|+. ++.+.. ...+..++.. ...+.|+++|+||+||.+...+..+...+.
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 146 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 146 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHH
Confidence 334445599999999999 554322 2233333322 124789999999999987655554444443
No 358
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=96.73 E-value=0.0039 Score=67.43 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=34.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.+..+|++|.|+||.++.........+.+.. .+.|+|+|+||+|+.+
T Consensus 90 ~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 90 GGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRIH 136 (594)
T ss_dssp SSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGST
T ss_pred HHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEeccccccc
Confidence 3567999999999999654333333344443 3689999999999975
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0014 Score=59.21 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHhhhcCEEEEEEecC-CCCCCC--CHHHHHHHHH----hCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 011507 137 KELVKVIEVSDVILEVLDAR-DPLGTR--CIDMEKMVMK----AGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDAR-dPl~~r--~~~le~~i~~----~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~ 204 (484)
..+...+..+|++|+|+|+. ++.+.. ...+..++.. ...+.|+++|+||+||.+...+..+.+.+.++
T Consensus 110 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~ 184 (193)
T 2ged_A 110 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESE 184 (193)
T ss_dssp HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHH
T ss_pred HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHHH
Confidence 33455567799999999998 442211 1223333322 12478999999999999876666666666543
No 360
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0013 Score=71.45 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCC-------CCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPL-------GTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl-------~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.|.+.....+..+|++|.|+||+++. ..........+.. .+.+++|+|+||+||++
T Consensus 257 ~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 257 DFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp CHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEEEEEECTTTTT
T ss_pred ccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEEEEEecccccc
Confidence 36777788889999999999999741 1111122222222 23456999999999997
No 361
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.00046 Score=64.10 Aligned_cols=44 Identities=27% Similarity=0.272 Sum_probs=34.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEEEE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQEVQ 304 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~~~ 304 (484)
..-.|+|+|.+|||||||+|.|.+... .-....+.|||.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 345789999999999999999997653 34567788898766543
No 362
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=96.56 E-value=0.0067 Score=66.77 Aligned_cols=67 Identities=16% Similarity=0.186 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE 204 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~ 204 (484)
|..+....+..+|.+|.|+|+.++.......+...+.. .+.|+|+|+||+|+...+ ....+..+++.
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD~~~~~-~~~~~~~l~~~ 156 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMDKTGAD-LWLVIRTMQER 156 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTCC-HHHHHHHHHHT
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCCcccCC-HHHHHHHHHHH
Confidence 56677888899999999999998765444444444443 368999999999998643 33344444443
No 363
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.56 E-value=0.00064 Score=66.27 Aligned_cols=80 Identities=23% Similarity=0.330 Sum_probs=52.1
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
+.+|+||.|+|+.++. ++..+...+.+ .+.|+|+|+||+|+.... ....|...+. .|.+
T Consensus 79 ~~~d~vi~V~D~t~~e--~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg--~~vi----------- 141 (272)
T 3b1v_A 79 QRADSILNVVDATNLE--RNLYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLG--VPVV----------- 141 (272)
T ss_dssp TCCSEEEEEEEGGGHH--HHHHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred CCCCEEEEEecCCchH--hHHHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcC--CCEE-----------
Confidence 4799999999998742 22223233333 378999999999996542 2344444332 2333
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
.+|+.++.|++.|++.|...+
T Consensus 142 --------------~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 142 --------------ATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHSC
T ss_pred --------------EEEccCCCCHHHHHHHHHHHH
Confidence 345567889999999887654
No 364
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=96.54 E-value=0.0013 Score=63.91 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhhcCEEE-EEEecCCCCCCCCH-HHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 134 AFYKELVKVIEVSDVIL-EVLDARDPLGTRCI-DMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 134 ~~~~el~kvie~sDvIl-eVlDARdPl~~r~~-~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
.+...+...+..+|.+| .|+|+.+++..... .+.+.+. ..++|+|+|+||+||++..
T Consensus 150 ~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~--~~~~~~i~V~NK~Dl~~~~ 208 (299)
T 2aka_B 150 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD--PQGQRTIGVITKLDLMDEG 208 (299)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC--TTCSSEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC--CCCCeEEEEEEccccCCCC
Confidence 55566677888888555 79999988765432 2333332 2368999999999998754
No 365
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.53 E-value=0.0016 Score=70.54 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=27.3
Q ss_pred HHHhhhcCEEEEEEecCCCC-------CCCCHHHHHHHHHhCCCC-ceeEEeeccCCCC
Q 011507 140 VKVIEVSDVILEVLDARDPL-------GTRCIDMEKMVMKAGPDK-HLVLLLNKIDLVP 190 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl-------~~r~~~le~~i~~~~~~K-~~IlVLNKiDLvp 190 (484)
...+..+|++|+|+||.++. .........++... +. ++|+|+||+||++
T Consensus 273 ~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~ 329 (592)
T 3mca_A 273 IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMS 329 (592)
T ss_dssp CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGT
T ss_pred HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc--CCCeEEEEEecccccc
Confidence 34456799999999999864 22222233333332 44 4899999999986
No 366
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=96.53 E-value=0.0038 Score=62.41 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=58.2
Q ss_pred EEEEecCCCCchhHHHHHhhcCccceecCCCCeeeeeEEEEe--CCcEEEEecCCCccCCCCChHHHHHHhccccccccC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCHVANVGATPGLTRSMQEVQL--DKNVKLLDCPGVVMLKSGENDASIALRNCKRIEKLD 341 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~~~~v~~~pg~Tr~~~~~~l--~~~i~liDTPGi~~~~~~~~~~~~~L~~~~~i~~l~ 341 (484)
+|.++|..|||||||++.+.+..........+.|-......+ .-.+.|+||||--.-....-......+++..+..+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 488999999999999998876532221111222322221122 246899999997644211112234567777766555
Q ss_pred CCchh----H---HHHHhh----CC-cchhhhhcCCCCCCC
Q 011507 342 DPVGP----V---KEILNR----CP-ANLLISLYKLPSFDS 370 (484)
Q Consensus 342 d~~~~----v---~~il~~----~~-~~~l~~~~ki~~~~~ 370 (484)
|.... . ..++.. .+ .+.+...||.|...+
T Consensus 81 Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 81 DSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 54321 1 112221 22 244556688876544
No 367
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.52 E-value=0.0034 Score=56.43 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=35.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHhCCCCceeEEeeccCCCCHHHH
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMV---MKAGPDKHLVLLLNKIDLVPRESV 194 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i---~~~~~~K~~IlVLNKiDLvp~e~~ 194 (484)
..+..+|+++.|.|..++..+. ..+..++ ....++.|+|+|.||+||.+...+
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 130 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQR 130 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH
T ss_pred HHccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhh
Confidence 3456799999999998874322 1222222 222347899999999999876544
No 368
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.51 E-value=0.0095 Score=53.10 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=52.1
Q ss_pred hhhcCEEEEEEecCCCCCC---------CC--HHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCC---
Q 011507 143 IEVSDVILEVLDARDPLGT---------RC--IDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELP--- 206 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~---------r~--~~le~~i~~~~~~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p--- 206 (484)
...+|+|+.|+|+...... .. ..+...+.. .+.|+++|+||+||.+.. ....|...+.-.+.
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccC
Confidence 5668899999997543110 00 112222222 468999999999998743 34555544432110
Q ss_pred eEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 207 AVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 207 ~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...| ..|+.++.|.+.+++.|.+...
T Consensus 158 ~~~~-----------------------~~Sa~~~~~v~~l~~~l~~~~~ 183 (190)
T 2cxx_A 158 KVFI-----------------------PISAKFGDNIERLKNRIFEVIR 183 (190)
T ss_dssp HHEE-----------------------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred CcEE-----------------------EEecCCCCCHHHHHHHHHHhcc
Confidence 0011 3456778899999988876554
No 369
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.50 E-value=0.0036 Score=56.50 Aligned_cols=88 Identities=11% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHH---hCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEE
Q 011507 140 VKVIEVSDVILEVLDARDPLGTRC--IDMEKMVMK---AGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVA 209 (484)
Q Consensus 140 ~kvie~sDvIleVlDARdPl~~r~--~~le~~i~~---~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~l~~~~p~v~ 209 (484)
...+..+|++|.|.|+.++.+... .++..+... ...+.|+|+|+||+||.. .+....|...+. .+ .
T Consensus 86 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~--~ 161 (187)
T 3c5c_A 86 ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG--CL--F 161 (187)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT--CE--E
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC--Cc--E
Confidence 346678999999999998754321 111222111 124789999999999954 233444443331 22 2
Q ss_pred EEccchhhhhhcCCCccCCCCCCccccc-ccccCHHHHHHHHHhhh
Q 011507 210 FKCSTQEQRANLGWKSSKTAKPSNILQT-SDCLGAETLIKLLKNYS 254 (484)
Q Consensus 210 f~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~g~~~Ll~~Lk~~~ 254 (484)
| .+|+ .++.|++.|++.|.+..
T Consensus 162 ~-----------------------e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 162 F-----------------------EVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp E-----------------------ECCSSSCSHHHHHHHHHHHHHH
T ss_pred E-----------------------EEeecCccccHHHHHHHHHHHH
Confidence 2 2445 56678888888776543
No 370
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.50 E-value=0.0031 Score=65.64 Aligned_cols=61 Identities=25% Similarity=0.203 Sum_probs=39.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhc-----------------CccceecCCC-CeeeeeEEEE----e----C--CcEEEEe
Q 011507 262 SITVGVIGLPNVGKSSLINSLKR-----------------CHVANVGATP-GLTRSMQEVQ----L----D--KNVKLLD 313 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~-----------------~~~~~v~~~p-g~Tr~~~~~~----l----~--~~i~liD 313 (484)
-..|+|+|.+++|||+|+|.|.+ .....+++.. .+|+.+-... + + ..+.|+|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 46788999999999999997752 1223343322 2455533211 1 1 2489999
Q ss_pred cCCCccCCC
Q 011507 314 CPGVVMLKS 322 (484)
Q Consensus 314 TPGi~~~~~ 322 (484)
|.|+..+..
T Consensus 147 TEG~~d~~~ 155 (457)
T 4ido_A 147 TQGTFDSQS 155 (457)
T ss_dssp ECCBTCTTC
T ss_pred ccCCCCccc
Confidence 999987744
No 371
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=96.50 E-value=0.0058 Score=60.32 Aligned_cols=53 Identities=26% Similarity=0.399 Sum_probs=37.1
Q ss_pred HHHHhhhcCEEEEEEecCCCCCCCCH-HHHHHH---HHhCCCCceeEEeeccCCCCH
Q 011507 139 LVKVIEVSDVILEVLDARDPLGTRCI-DMEKMV---MKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 139 l~kvie~sDvIleVlDARdPl~~r~~-~le~~i---~~~~~~K~~IlVLNKiDLvp~ 191 (484)
....+..+|++|.|+|+.++.+..+. .+...+ ....++.|+++|+||+||.+.
T Consensus 74 ~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~ 130 (307)
T 3r7w_A 74 KDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL 130 (307)
T ss_dssp HHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred HHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence 45566789999999999998654332 111122 223457999999999999983
No 372
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.50 E-value=0.0036 Score=64.74 Aligned_cols=93 Identities=30% Similarity=0.307 Sum_probs=60.0
Q ss_pred HHHhhhcCEEEEEEecC-CCCCCCCHHHHHHHHHhC---CCCceeEEeeccCCCCHHHHHHHHHHHHhcCCeEEEEccch
Q 011507 140 VKVIEVSDVILEVLDAR-DPLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLVPRESVEKWLKYLREELPAVAFKCSTQ 215 (484)
Q Consensus 140 ~kvie~sDvIleVlDAR-dPl~~r~~~le~~i~~~~---~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~p~v~f~~~~~ 215 (484)
.+.++.+|++|+|+|+. +|+...+. .++.+.... ..+|.|+|+||+|+...+.+..+..++.....++.
T Consensus 230 l~~~era~~lL~vvDls~~~~~~ls~-g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi------ 302 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTLET-LRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVL------ 302 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHHHH-HHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE------
T ss_pred HHHHHHHHhhhEEeCCccCCHHHHHH-HHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEE------
Confidence 34578899999999994 55432221 112211111 25899999999999987666667776654322222
Q ss_pred hhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhhc
Q 011507 216 EQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRSH 257 (484)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~~ 257 (484)
.+|+.+..|++.|++.|..++...
T Consensus 303 ------------------~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 303 ------------------PVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp ------------------ECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred ------------------EEECCCccCHHHHHHHHHHHHHhc
Confidence 344566788999999888776543
No 373
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=96.49 E-value=0.0049 Score=63.98 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCC----CCHHHHHHHH--HhCCCCceeEEeeccCCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGT----RCIDMEKMVM--KAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~----r~~~le~~i~--~~~~~K~~IlVLNKiDLvp 190 (484)
|..+....+..+|++|.|+||.+.... ..++..+.+. ...+.+++|+|+||+||++
T Consensus 97 f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 97 FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 667778888999999999999984000 1122333221 1123357899999999987
No 374
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.46 E-value=0.0079 Score=69.21 Aligned_cols=56 Identities=18% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp 190 (484)
..|.++....+..+|++|.|+||+++...........+... +.| +|+|+||+||++
T Consensus 370 edF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 370 ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCC
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeeccccc
Confidence 45777888888999999999999998655444433444433 466 789999999996
No 375
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.45 E-value=0.0011 Score=59.46 Aligned_cols=82 Identities=28% Similarity=0.368 Sum_probs=50.1
Q ss_pred hhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH----HHHHHHHHHHhcCCeEEEEccchhhhh
Q 011507 144 EVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE----SVEKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e----~~~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
..+|+++.|+|+.+.. ....+...+.. .+.|+|+|+||+|+.... ....|.+.+. .+.+
T Consensus 84 ~~~~~~i~v~d~~~~~--~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~----------- 146 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--VKVV----------- 146 (188)
T ss_dssp HCCSEEEEEEEGGGHH--HHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT--SCEE-----------
T ss_pred cCCCEEEEEecchhHH--HHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhC--CCeE-----------
Confidence 4599999999998521 11111122222 468999999999996432 2333333221 2222
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+|+..+.|++.|++.|.+....
T Consensus 147 --------------~~Sa~~~~~v~~l~~~i~~~~~~ 169 (188)
T 2wjg_A 147 --------------PLSAAKKMGIEELKKAISIAVKD 169 (188)
T ss_dssp --------------ECBGGGTBSHHHHHHHHHHHHTT
T ss_pred --------------EEEecCCCCHHHHHHHHHHHHHh
Confidence 34556778899999988776654
No 376
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=96.37 E-value=0.0078 Score=63.08 Aligned_cols=56 Identities=16% Similarity=0.229 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCC-------CCCHHHHHHHHHhCCCCc-eeEEeeccCCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLG-------TRCIDMEKMVMKAGPDKH-LVLLLNKIDLVP 190 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~-------~r~~~le~~i~~~~~~K~-~IlVLNKiDLvp 190 (484)
..|.++....+..+|++|+|+||++... .........+.. .+.| +|+|+||+||.+
T Consensus 132 ~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 132 KGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPS 195 (467)
T ss_dssp ----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTT
T ss_pred HHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCC
Confidence 3467777888899999999999998731 111111222222 2455 899999999964
No 377
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=96.34 E-value=0.00021 Score=65.37 Aligned_cols=85 Identities=14% Similarity=0.153 Sum_probs=45.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHH---HHh-CCCCceeEEeeccCCCCHHH-----HHHHHHHHHhcCCeEEEEc
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMV---MKA-GPDKHLVLLLNKIDLVPRES-----VEKWLKYLREELPAVAFKC 212 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i---~~~-~~~K~~IlVLNKiDLvp~e~-----~~~wl~~l~~~~p~v~f~~ 212 (484)
.+..+|+||+|+|+.++.+. ..+..++ ... ..+.|+|+|+||+||.+... ...|...+. .+
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~------ 171 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQESF--NNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG--IP------ 171 (199)
T ss_dssp --CCCSEEEECC-CCCSHHH--HHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT--CC------
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC--Ce------
Confidence 45779999999999987542 2233332 221 23689999999999976432 222222111 11
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
...+|+.++.|++.|++.|.+...
T Consensus 172 -------------------~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 172 -------------------FLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -------------------BCCCCC---HHHHHHHHHHTTTTT
T ss_pred -------------------EEEEECCCCCCHHHHHHHHHHHHH
Confidence 124566777888999888866543
No 378
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=96.31 E-value=0.0066 Score=66.87 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|..+....+..+|++|+|+|+.++.......+...+.. .+.|+|+|+||+|+.+.
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECCCcccc
Confidence 44567778889999999999998876544444444444 36899999999999864
No 379
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.30 E-value=0.0025 Score=67.96 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=52.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHH--HHHHHHHHHhc-CCeEEEEccchhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRES--VEKWLKYLREE-LPAVAFKCSTQEQR 218 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~--~~~wl~~l~~~-~p~v~f~~~~~~~~ 218 (484)
.+..+|++|.|+|+.++ .....+...+....++.|+|+|+||+||.+... ......++... .+.+
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~---------- 185 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFH---------- 185 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEE----------
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceE----------
Confidence 35569999999999876 233444455555556799999999999986432 22223333222 1222
Q ss_pred hhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhhh
Q 011507 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSRS 256 (484)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~~ 256 (484)
.+|+.++.|++.|++.|......
T Consensus 186 ---------------~vSA~~g~gi~eL~~~l~~~~~~ 208 (535)
T 3dpu_A 186 ---------------RISCKNGDGVESIAKSLKSAVLH 208 (535)
T ss_dssp ---------------ECCC-----CTTHHHHHHHHHTC
T ss_pred ---------------EEecCcccCHHHHHHHHHHHHhc
Confidence 34556677888888888776554
No 380
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.19 E-value=0.0087 Score=59.99 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=51.4
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHHHhc---CC------eEEEEc
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYLREE---LP------AVAFKC 212 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l~~~---~p------~v~f~~ 212 (484)
++..+|++|.|+|+..+.... .+..... +.|.++|+||+|+.+...+..++..++.. ++ ...
T Consensus 166 ~~~~aD~vl~Vvd~~~~~~~~--~l~~~~~----~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--- 236 (341)
T 2p67_A 166 VARMVDCFISLQIAGGGDDLQ--GIKKGLM----EVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR--- 236 (341)
T ss_dssp HHTTCSEEEEEECC------C--CCCHHHH----HHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE---
T ss_pred HHHhCCEEEEEEeCCccHHHH--HHHHhhh----cccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCc---
Confidence 568899999999997552211 1111111 35789999999999875555555444331 11 011
Q ss_pred cchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 213 STQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..++|+.++.|.+.|++.|.++.
T Consensus 237 -------------------vi~iSA~~g~gi~~L~~~l~~~~ 259 (341)
T 2p67_A 237 -------------------VLTCSALEKRGIDEIWHAIIDFK 259 (341)
T ss_dssp -------------------EEECBGGGTBSHHHHHHHHHHHH
T ss_pred -------------------EEEeeCCCCCCHHHHHHHHHHHH
Confidence 12456678889999999998754
No 381
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.19 E-value=0.0045 Score=57.19 Aligned_cols=81 Identities=16% Similarity=0.108 Sum_probs=48.6
Q ss_pred cCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEccchhhhhhcCC
Q 011507 146 SDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKCSTQEQRANLGW 223 (484)
Q Consensus 146 sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~ 223 (484)
++.++.|+|+..+.. ......... +.|.++|+||+|+.+.. .......+++...+...+.
T Consensus 130 ~~~~i~vvd~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~------------ 191 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD----VVEKHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKII------------ 191 (221)
T ss_dssp CSEEEEEEEGGGCTT----HHHHCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEE------------
T ss_pred cCcEEEEEeCCCcch----hhhhhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEE------------
Confidence 456777999987632 111111111 47899999999997542 3444445554433322221
Q ss_pred CccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 224 KSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 224 ~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|.+.|++.|....
T Consensus 192 ----------~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 192 ----------EMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp ----------ECBTTTTBTHHHHHHHHHHHH
T ss_pred ----------EeecCCCCCHHHHHHHHHHHH
Confidence 345567789999998887654
No 382
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.17 E-value=0.0062 Score=67.10 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=38.3
Q ss_pred HHHHHHhhhcCEEEEEEecCCCCCCCCHHHH-HHHHHhCCCCceeEEeeccCCCCHH
Q 011507 137 KELVKVIEVSDVILEVLDARDPLGTRCIDME-KMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 137 ~el~kvie~sDvIleVlDARdPl~~r~~~le-~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
......+..+|+||+|+|+.++++.....+. +.+. ..++|+++|+||+|+++..
T Consensus 192 ~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~--~~~~~iiiVlNK~Dl~~~~ 246 (695)
T 2j69_A 192 ELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK--GRGLTVFFLVNAWDQVRES 246 (695)
T ss_dssp HHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT--TSCCCEEEEEECGGGGGGG
T ss_pred HHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH--hhCCCEEEEEECccccccc
Confidence 4566788899999999999988764332221 2222 1367899999999998653
No 383
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=96.05 E-value=0.017 Score=54.00 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=56.5
Q ss_pred HHhhhcCEEEEEEecCCCCCCCC--HHHHHHHHHhCCCCceeEEeeccCCCC-----HHHHHHHHHHHHhcCCeEEEEcc
Q 011507 141 KVIEVSDVILEVLDARDPLGTRC--IDMEKMVMKAGPDKHLVLLLNKIDLVP-----RESVEKWLKYLREELPAVAFKCS 213 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~--~~le~~i~~~~~~K~~IlVLNKiDLvp-----~e~~~~wl~~l~~~~p~v~f~~~ 213 (484)
..+..+|++|.|.|..++.+..+ .++..+.....++.|+|||.||+||.. .+....|.+.+. ...|
T Consensus 81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~----~~~~--- 153 (216)
T 4dkx_A 81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN----VMFI--- 153 (216)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT----CEEE---
T ss_pred HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC----CeeE---
Confidence 34568999999999998865433 233333333456789999999999954 344444544332 2222
Q ss_pred chhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 214 TQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.+++.|....
T Consensus 154 --------------------e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 154 --------------------ETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp --------------------EEBTTTTBSHHHHHHHHHHHC
T ss_pred --------------------EEeCCCCcCHHHHHHHHHHHH
Confidence 245677889999988776543
No 384
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.04 E-value=0.019 Score=62.83 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=40.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv 189 (484)
|..++...+..+|.++.|+|+.+.+......+.+.+.. .+.|+|+|+||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 55678888999999999999887765433344444433 368999999999997
No 385
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.02 E-value=0.0062 Score=62.56 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=25.5
Q ss_pred CCceeEEeeccCCCCHHHHHHHHHHHHhcC-CeEEEEcc
Q 011507 176 DKHLVLLLNKIDLVPRESVEKWLKYLREEL-PAVAFKCS 213 (484)
Q Consensus 176 ~K~~IlVLNKiDLvp~e~~~~wl~~l~~~~-p~v~f~~~ 213 (484)
.+|+|+|+||+|+...+.+..+.+++.... +.++++|.
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~ 252 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKRGYIVIPTSAA 252 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHTTCEEEEECHH
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhcCCcEEEEecc
Confidence 499999999999986555566655554322 45555543
No 386
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.97 E-value=0.013 Score=59.09 Aligned_cols=92 Identities=11% Similarity=0.131 Sum_probs=49.8
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHH----HHHHHHhcCCeEEEEccchh
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEK----WLKYLREELPAVAFKCSTQE 216 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~----wl~~l~~~~p~v~f~~~~~~ 216 (484)
.+.+.+|+++.|+|+..+... ..+...+ -..+.++|+||+|+.+...... +...++...|....
T Consensus 183 ~l~~~~d~vl~V~d~~~~~~~--~~i~~~i----l~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~------ 250 (349)
T 2www_A 183 AVADMVDMFVLLLPPAGGDEL--QGIKRGI----IEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQV------ 250 (349)
T ss_dssp HHHTTCSEEEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----------
T ss_pred hHHhhCCEEEEEEcCCcchhH--HHhHHHH----HhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccC------
Confidence 457899999999999875321 1121112 1467899999999987543322 22222211110000
Q ss_pred hhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 217 QRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
+. .....+|+.++.|.+.|++.|..+..
T Consensus 251 ------~~-----~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 251 ------WK-----PKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp ------CC-----CEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------CC-----ceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 00 00124567788999999999987653
No 387
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.96 E-value=0.012 Score=56.09 Aligned_cols=56 Identities=14% Similarity=0.055 Sum_probs=36.8
Q ss_pred HHHHHHHHh----hhcCEEEEEEecCCCCCCCCHHHHHHHHHh-C---CCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVI----EVSDVILEVLDARDPLGTRCIDMEKMVMKA-G---PDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvi----e~sDvIleVlDARdPl~~r~~~le~~i~~~-~---~~K~~IlVLNKiDLvp~ 191 (484)
+++++.+.+ ..+|+||+|+|+.. +......+.+.+... + .+.|+|+|.||+||.+.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~ 154 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG 154 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC
Confidence 344444444 89999999999975 333333444444432 1 15789999999999763
No 388
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=95.87 E-value=0.026 Score=62.16 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=41.2
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|..+....+..+|.+|.|+||.+........+.+.+.. .+.|+++|+||+|+...
T Consensus 95 f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 95 FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCCcccc
Confidence 66788889999999999999998754333333333332 36899999999999764
No 389
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=95.76 E-value=0.0055 Score=64.12 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCC-------CCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGT-------RCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~-------r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
.|.++....+..+|++|+|+||+++... ........+... +-+++|+|+||+||++
T Consensus 97 ~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~-~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 97 DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GVRQLIVAVNKMDSVK 159 (458)
T ss_dssp THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TCCEEEEEEECGGGGT
T ss_pred HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc-CCCeEEEEEEcccccc
Confidence 4777888889999999999999976310 111111222222 2235899999999984
No 390
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.65 E-value=0.019 Score=62.27 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..|+|||.+|+|||||+|+|.|-.
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 359999999999999999999863
No 391
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.65 E-value=0.0076 Score=62.65 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred cceEEEEecCCCCchhHHHHHhh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
++..|+++|.|||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 392
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=95.45 E-value=0.0079 Score=60.54 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=36.7
Q ss_pred HHHHHHHHHh-hhcCEEEEEEecCCCCCCCCHHHHHHHHHh-CCCCceeEEeeccCCCCHH
Q 011507 134 AFYKELVKVI-EVSDVILEVLDARDPLGTRCIDMEKMVMKA-GPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 134 ~~~~el~kvi-e~sDvIleVlDARdPl~~r~~~le~~i~~~-~~~K~~IlVLNKiDLvp~e 192 (484)
.+...+...+ ..+|+||.|+||..++..... ..++... ..+.|+|+|+||+||++..
T Consensus 155 ~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~i~~~~~~~~~~~i~V~NK~Dl~~~~ 213 (353)
T 2x2e_A 155 QIRDMLMQFVTKENCLILAVSPANSDLANSDA--LKVAKEVDPQGQRTIGVITKLDLMDEG 213 (353)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HHHHHHHCTTCTTEEEEEECGGGSCTT
T ss_pred HHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HHHHHHhCcCCCceEEEeccccccCcc
Confidence 3444444555 456788889999876654432 2233322 2368999999999998754
No 393
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.012 Score=54.70 Aligned_cols=85 Identities=16% Similarity=0.108 Sum_probs=50.1
Q ss_pred hhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh--CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEccc
Q 011507 143 IEVSDVILEVLDARDPLGTRCI-DMEKMVMKA--GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 143 ie~sDvIleVlDARdPl~~r~~-~le~~i~~~--~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
...+|++|.|.|..++.+.... .....+... ..+.|+|||.||+||.+. +....|... +....|
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~----~~~~~~---- 180 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVV----FDCKFI---- 180 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHH----HTCEEE----
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHH----cCCEEE----
Confidence 3458999999998876432211 122223221 246899999999999642 222223222 221122
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.|++.|.+..
T Consensus 181 -------------------e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 181 -------------------ETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp -------------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------------EEeCCCCCCHHHHHHHHHHHH
Confidence 345677889999998887654
No 394
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.35 E-value=0.0066 Score=54.80 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=28.1
Q ss_pred eEEEEecCCCCchhHHHHHhhcCcc-ceecCCCCeeeeeEE
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCHV-ANVGATPGLTRSMQE 302 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~~-~~v~~~pg~Tr~~~~ 302 (484)
-.++|+|.+++|||||++.|.+... ...+..+.+|+.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ 46 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKK 46 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCc
Confidence 4689999999999999999997542 123445556665443
No 395
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.32 E-value=0.017 Score=54.29 Aligned_cols=61 Identities=10% Similarity=0.106 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhcCEEEEEEecCCCCCCCCHH-HHHHHHHh--CCCCceeEEeeccCCCCHHHHH
Q 011507 134 AFYKELVKVIEVSDVILEVLDARDPLGTRCID-MEKMVMKA--GPDKHLVLLLNKIDLVPRESVE 195 (484)
Q Consensus 134 ~~~~el~kvie~sDvIleVlDARdPl~~r~~~-le~~i~~~--~~~K~~IlVLNKiDLvp~e~~~ 195 (484)
.+.+.+......+|++|+|+|+... ...... +..+.... ...+|+|+|+||+|+++...+.
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~ 164 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLH 164 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHH
Confidence 4444444445567999999999743 322222 22222111 1246899999999998766554
No 396
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=95.13 E-value=0.014 Score=62.14 Aligned_cols=56 Identities=21% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e 192 (484)
|..+....+..+|.+|.|+||.++.......+...+. ..+.|+|+|+||+|+....
T Consensus 95 f~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~--~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 95 FSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--LRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHT--TTTCCEEEEEECTTSCCSC
T ss_pred HHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHH--HcCCCEEEEEcCcCCcccc
Confidence 3456777889999999999999876433333333322 2368999999999998643
No 397
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.09 E-value=0.026 Score=51.08 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=49.7
Q ss_pred hhcCEEEEEEecCCCCCCCC-HHHHHHHHHh--CCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchhhhh
Q 011507 144 EVSDVILEVLDARDPLGTRC-IDMEKMVMKA--GPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQEQRA 219 (484)
Q Consensus 144 e~sDvIleVlDARdPl~~r~-~~le~~i~~~--~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~~~~ 219 (484)
..+|.++.|.|..++.+... ..+...+... ..+.|+|+|.||+||.....+ ......+...+....|
T Consensus 79 ~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~--------- 149 (192)
T 2cjw_A 79 QVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFI--------- 149 (192)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEE---------
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceE---------
Confidence 45899999999987654322 1122223322 246899999999999643211 1111112222222122
Q ss_pred hcCCCccCCCCCCcccccccccCHHHHHHHHHhhh
Q 011507 220 NLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYS 254 (484)
Q Consensus 220 ~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~ 254 (484)
..|+.++.|++.+++.|....
T Consensus 150 --------------e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 150 --------------ETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp --------------ECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------EeccccCCCHHHHHHHHHHHH
Confidence 245567788999888776544
No 398
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.08 E-value=0.031 Score=53.68 Aligned_cols=60 Identities=13% Similarity=0.165 Sum_probs=36.7
Q ss_pred HHHHHHHHHHh--hhcCEEEEEEecCCC-CCCCCHHHHHHHHHh-CCC--CceeEEeeccCCCCHH
Q 011507 133 RAFYKELVKVI--EVSDVILEVLDARDP-LGTRCIDMEKMVMKA-GPD--KHLVLLLNKIDLVPRE 192 (484)
Q Consensus 133 k~~~~el~kvi--e~sDvIleVlDARdP-l~~r~~~le~~i~~~-~~~--K~~IlVLNKiDLvp~e 192 (484)
..+++.+++.+ ..+|+||+|+|+... +......+.+.+... +.+ +|+|+|+||+||.+++
T Consensus 105 ~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 105 DMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp HHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 45556665543 369999999877442 111112333444332 212 6899999999999865
No 399
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.99 E-value=0.022 Score=52.48 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=23.7
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..+..|+|+|.+++|||||++.|.+.-
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998754
No 400
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.85 E-value=0.011 Score=58.25 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=20.0
Q ss_pred ceEEEEecCCCCchhHHHHHhh
Q 011507 262 SITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
+..|+++|.+|+||||+++.|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la 119 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLA 119 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999997
No 401
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.84 E-value=0.036 Score=51.16 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=35.1
Q ss_pred CCceeEEeeccCCCCHH--HHHHHHHHHHhcCCeEEEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhh
Q 011507 176 DKHLVLLLNKIDLVPRE--SVEKWLKYLREELPAVAFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNY 253 (484)
Q Consensus 176 ~K~~IlVLNKiDLvp~e--~~~~wl~~l~~~~p~v~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~ 253 (484)
.++.++|+||+|+.+.. .......+++...+...+. ..|+.++.|.+.|++.|...
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~Sa~~g~gv~~l~~~l~~~ 221 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVV----------------------LLSLKTMEGFDKVLEFIEKS 221 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEE----------------------ECCTTTCTTHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEE----------------------EEEecCCCCHHHHHHHHHHH
Confidence 47889999999997542 2333344444332222221 34556778999999888654
Q ss_pred h
Q 011507 254 S 254 (484)
Q Consensus 254 ~ 254 (484)
.
T Consensus 222 ~ 222 (226)
T 2hf9_A 222 V 222 (226)
T ss_dssp H
T ss_pred H
Confidence 4
No 402
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.67 E-value=0.0069 Score=55.72 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=28.3
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeE
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQ 301 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~ 301 (484)
.+..|+|+|.|++|||||++.|...... .....+.|||...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~ 52 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKR 52 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCC
Confidence 3467899999999999999999864311 1223345666544
No 403
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.67 E-value=0.083 Score=52.32 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|++.|.+++||||+.+.|.+.
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc
Confidence 467999999999999999999975
No 404
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.67 E-value=0.021 Score=59.27 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.4
Q ss_pred ceEEEEecCCCCchhHHHHHhh
Q 011507 262 SITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
+..|+++|.+||||||+++.|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5789999999999999999997
No 405
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.63 E-value=0.044 Score=55.04 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhC-CCCceeEEeeccCCCCHH
Q 011507 131 SDRAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG-PDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 131 ~~k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~-~~K~~IlVLNKiDLvp~e 192 (484)
....+...+...+..+|+||.|+|+....... .....++.... .++|.|+|+||+|+++..
T Consensus 158 ~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 158 IVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGGGCCTT
T ss_pred HHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCccCCCc
Confidence 44556667788899999999999875432222 23334444432 367999999999999754
No 406
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.63 E-value=0.023 Score=50.82 Aligned_cols=43 Identities=14% Similarity=0.298 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcC
Q 011507 243 AETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 243 ~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
....++.+.+|+.+-.....-.++++|.||+|||||+++|.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3456666676666544444567999999999999999999865
No 407
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.58 E-value=0.015 Score=52.66 Aligned_cols=24 Identities=25% Similarity=0.516 Sum_probs=21.5
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
++++|+|.+++|||||++.|.+.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999999764
No 408
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.57 E-value=0.039 Score=55.69 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=32.7
Q ss_pred CEEEEEEec-CCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCHHHHHHHHHHH
Q 011507 147 DVILEVLDA-RDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPRESVEKWLKYL 201 (484)
Q Consensus 147 DvIleVlDA-RdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~e~~~~wl~~l 201 (484)
|++++++|+ +.++..... .++.....+.|+|+|+||+|+.....+..+...+
T Consensus 147 ~~~vy~I~~~~~~l~~~d~---~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i 199 (361)
T 2qag_A 147 HCCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRI 199 (361)
T ss_dssp CEEEEEECSSSSSCCHHHH---HHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCcchhHH---HHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 568888875 555543222 2333334578999999999999877665443333
No 409
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.52 E-value=0.019 Score=51.59 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+-.|+|+|.|++|||||++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3457999999999999999999875
No 410
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.44 E-value=0.037 Score=50.66 Aligned_cols=27 Identities=30% Similarity=0.539 Sum_probs=23.2
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcC
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...+..|+|+|.+++|||||++.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345678999999999999999999863
No 411
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.24 E-value=0.025 Score=52.17 Aligned_cols=38 Identities=16% Similarity=0.091 Sum_probs=27.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCccc-eecCCCCeeee
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRS 299 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~ 299 (484)
+..|+|+|.+|+|||||++.|.+.... .....+.+|+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~ 46 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRL 46 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEeccccc
Confidence 456899999999999999999976532 23334445554
No 412
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=94.23 E-value=0.099 Score=55.84 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCCH
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVPR 191 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp~ 191 (484)
|..++.+++..+|-+|.|+||-.-.......+-+.+.. .+.|.|+++||+|....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEecccchhc
Confidence 67799999999999999999998765444445555444 37899999999998643
No 413
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.18 E-value=0.066 Score=48.40 Aligned_cols=87 Identities=16% Similarity=0.055 Sum_probs=51.7
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH-HHHHHHHHh-CCCCceeEEeeccCCCCH-----HHHHHHHHHHHhcCCeEEEEccc
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI-DMEKMVMKA-GPDKHLVLLLNKIDLVPR-----ESVEKWLKYLREELPAVAFKCST 214 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~-~le~~i~~~-~~~K~~IlVLNKiDLvp~-----e~~~~wl~~l~~~~p~v~f~~~~ 214 (484)
....+|++|.|.|+.++.+.... .....+... ....|+++|+||+||... +....| ........+.
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l----~~~~~~~~~d--- 146 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAF----AEKNNLSFIE--- 146 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHH----HHHTTCEEEE---
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHH----HHHcCCeEEE---
Confidence 34578999999999887543221 111222222 246789999999999642 222222 2222322232
Q ss_pred hhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 215 QEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.|+.+..|.+.+++.|.....
T Consensus 147 --------------------~Sal~~~~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 147 --------------------TSALDSTNVEEAFKNILTEIY 167 (199)
T ss_dssp --------------------CCTTTCTTHHHHHHHHHHHHH
T ss_pred --------------------EeCCCCCCHHHHHHHHHHHHH
Confidence 345677888889888876543
No 414
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.91 E-value=0.022 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
-.++|+|.+|+|||||++.|.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998753
No 415
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.84 E-value=0.11 Score=51.74 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=49.1
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC-HHHHHHHHHHHHhc-----------CCeE
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP-RESVEKWLKYLREE-----------LPAV 208 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp-~e~~~~wl~~l~~~-----------~p~v 208 (484)
.+.+.+|+++.|+|+..+.. ...+...+. ..+.++|+||+||++ .+....+.+.+... .|.+
T Consensus 164 ~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~v 237 (337)
T 2qm8_A 164 AVADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPV 237 (337)
T ss_dssp HHHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCE
T ss_pred hHHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCE
Confidence 45688999999999864321 000111111 134588899999876 33333333333221 1211
Q ss_pred EEEccchhhhhhcCCCccCCCCCCcccccccccCHHHHHHHHHhhhh
Q 011507 209 AFKCSTQEQRANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKNYSR 255 (484)
Q Consensus 209 ~f~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~~~~ 255 (484)
.++|+.++.|.+.|++.|..+..
T Consensus 238 ------------------------l~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 238 ------------------------VTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp ------------------------EEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ------------------------EEEeCCCCCCHHHHHHHHHHHHH
Confidence 23566788899999999987653
No 416
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.79 E-value=0.026 Score=58.56 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.0
Q ss_pred cceEEEEecCCCCchhHHHHHhh-------cCccceec
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK-------RCHVANVG 291 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~-------~~~~~~v~ 291 (484)
.+..|+++|.+||||||+...|. |.+++-+.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 35688999999999999999997 66665443
No 417
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.61 E-value=0.034 Score=50.51 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.+..|+|+|.+++||||+++.|.+..
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34679999999999999999998764
No 418
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.51 E-value=0.036 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+-.++|+|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 356899999999999999999975
No 419
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.40 E-value=0.058 Score=53.66 Aligned_cols=35 Identities=29% Similarity=0.323 Sum_probs=26.2
Q ss_pred HhhhhhcccccceEEEEecCCCCchhHHHHHhhcC
Q 011507 251 KNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 251 k~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..+........++.|||+|-+++|||||++.|.+.
T Consensus 81 ~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 81 YQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 33333333345788999999999999999999764
No 420
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.33 E-value=0.039 Score=50.74 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|.+++|||||+|.|.+-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 44578999999999999999999753
No 421
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=93.30 E-value=0.078 Score=55.99 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=35.4
Q ss_pred HHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCCC
Q 011507 141 KVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLVP 190 (484)
Q Consensus 141 kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLvp 190 (484)
..+..+|++|.|+||.++...........+.. .+.|+|+|+||+||.+
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl~~ 117 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDKPE 117 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSSST
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccccc
Confidence 44678999999999999655444443344433 3688999999999975
No 422
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.29 E-value=0.035 Score=49.00 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.3
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|+|+|.|++|||||.+.|.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999864
No 423
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.29 E-value=0.11 Score=49.68 Aligned_cols=62 Identities=11% Similarity=-0.026 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHhh--hcCEEEEEEecCCCCCC-CCHHHHHHHHHhCC---CCceeEEeeccCCCCH
Q 011507 130 NSDRAFYKELVKVIE--VSDVILEVLDARDPLGT-RCIDMEKMVMKAGP---DKHLVLLLNKIDLVPR 191 (484)
Q Consensus 130 ~~~k~~~~el~kvie--~sDvIleVlDARdPl~~-r~~~le~~i~~~~~---~K~~IlVLNKiDLvp~ 191 (484)
.....+++.+++.+. .+|+||+|+|+..+-.+ ....+.+.+....+ .+|+|+|+||+||++.
T Consensus 99 ~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 99 YVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp EECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred cchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 344566777777664 68999999776544322 12234444443211 2589999999999754
No 424
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.07 E-value=0.044 Score=51.32 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=27.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCccc--eecCCCCeeee
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCHVA--NVGATPGLTRS 299 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~~~--~v~~~pg~Tr~ 299 (484)
.+-.++|+|.+|+|||||++.|.+.... ..+...-+|+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~ 55 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQ 55 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCC
Confidence 4557899999999999999999986431 23344444543
No 425
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.04 E-value=0.046 Score=50.02 Aligned_cols=25 Identities=32% Similarity=0.577 Sum_probs=22.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|||+|.+++|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999975
No 426
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=93.03 E-value=0.049 Score=61.22 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=39.6
Q ss_pred HHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhCCCCceeEEeeccCCC
Q 011507 135 FYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 135 ~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~~~K~~IlVLNKiDLv 189 (484)
|..+....+..+|.+|.|+||.++.......+...+.. .+.|+|+|+||+|+.
T Consensus 111 f~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 111 FSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDRA 163 (842)
T ss_dssp SCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHHH
T ss_pred hHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCcc
Confidence 44567788899999999999999865444333233322 368999999999997
No 427
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.92 E-value=0.091 Score=51.38 Aligned_cols=42 Identities=19% Similarity=0.081 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 244 ETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 244 ~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
+.|.+.+..+... ....+..|||+|.+++|||||.+.|.+.-
T Consensus 14 ~~l~~~i~~~~~~-~~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 14 EFLDKYIPEWFET-GNKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp HHHHHHHHHHHTT-TCCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc-cCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4566666665332 22356889999999999999999998653
No 428
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.89 E-value=0.05 Score=47.50 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=18.8
Q ss_pred eEEEEecCCCCchhHHHHHh
Q 011507 263 ITVGVIGLPNVGKSSLINSL 282 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L 282 (484)
+.|+|+|.|++||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 429
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.86 E-value=0.044 Score=49.52 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..++|+|.+|+|||||++.|.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46899999999999999999975
No 430
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.85 E-value=0.057 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.3
Q ss_pred eEEEEecCCCCchhHHHHHhhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
..|.|+|.|++||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5689999999999999999986
No 431
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.83 E-value=0.044 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcCc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
+-.++|+|.+++|||||++.|.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999999854
No 432
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.77 E-value=0.052 Score=49.50 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+..|+|+|.+++|||||++.|.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999864
No 433
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.77 E-value=0.061 Score=48.18 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|.|+|.|++||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999753
No 434
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.69 E-value=0.048 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.298 Sum_probs=19.5
Q ss_pred EEEEecCCCCchhHHHHHhhc
Q 011507 264 TVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~ 284 (484)
.++|+|.+++|||||++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 579999999999999999975
No 435
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.65 E-value=0.064 Score=47.49 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|+|+|.|++||||+.+.|.+.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 457999999999999999999764
No 436
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.65 E-value=0.048 Score=49.20 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.7
Q ss_pred EEEEecCCCCchhHHHHHhhcCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.++|+|.+|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47999999999999999999754
No 437
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.59 E-value=0.053 Score=49.60 Aligned_cols=38 Identities=21% Similarity=0.151 Sum_probs=28.7
Q ss_pred EEEecCCCCchhHHHHHhhcCccc-eecCCCCeeeeeEE
Q 011507 265 VGVIGLPNVGKSSLINSLKRCHVA-NVGATPGLTRSMQE 302 (484)
Q Consensus 265 V~vvG~pNvGKSSLIN~L~~~~~~-~v~~~pg~Tr~~~~ 302 (484)
|.|+|-+||||+||++.|...... -.-..+.|||.+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~ 42 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRA 42 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCC
Confidence 789999999999999999865421 23356778887553
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.57 E-value=0.086 Score=51.81 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..+..|||+|.+++|||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999874
No 439
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.50 E-value=0.054 Score=49.26 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.4
Q ss_pred eEEEEecCCCCchhHHHHHhhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
..|+|+|.+++||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3699999999999999999987
No 440
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.37 E-value=0.16 Score=45.56 Aligned_cols=88 Identities=17% Similarity=0.074 Sum_probs=49.5
Q ss_pred HhhhcCEEEEEEecCCCCCCCCH-HHHHHHHH-hCCCCceeEEeeccCCCCHHHH-HHHHHHHHhcCCeEEEEccchhhh
Q 011507 142 VIEVSDVILEVLDARDPLGTRCI-DMEKMVMK-AGPDKHLVLLLNKIDLVPRESV-EKWLKYLREELPAVAFKCSTQEQR 218 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~-~le~~i~~-~~~~K~~IlVLNKiDLvp~e~~-~~wl~~l~~~~p~v~f~~~~~~~~ 218 (484)
....+|.++.|.|..++.+..+. .....+.. .....++++|+||+||.....+ ......|-.......+.
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld------- 170 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIE------- 170 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEE-------
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEE-------
Confidence 45678999999998876432221 11122222 2246789999999999642110 11111222222322231
Q ss_pred hhcCCCccCCCCCCcccccccccCHHHHHHHHHh
Q 011507 219 ANLGWKSSKTAKPSNILQTSDCLGAETLIKLLKN 252 (484)
Q Consensus 219 ~~~~~~~~~~~~~~~~~s~~~~~g~~~Ll~~Lk~ 252 (484)
.|+.+..|.+.+++.|.+
T Consensus 171 ----------------~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 171 ----------------TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp ----------------CCTTTCTTHHHHHHHHHH
T ss_pred ----------------EeCCCCCCHHHHHHHHHH
Confidence 345677888999888765
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.37 E-value=0.061 Score=53.10 Aligned_cols=27 Identities=44% Similarity=0.505 Sum_probs=23.3
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
...-.++|+|.+|+|||||++.|.|-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345689999999999999999999753
No 442
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.33 E-value=0.068 Score=50.43 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCchhHHHHHhh
Q 011507 262 SITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
+..|+|+|.|++|||||++.|.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 443
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=92.33 E-value=0.16 Score=51.03 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=31.4
Q ss_pred HhhhcCEEEEEEecCCCCC--------CCCHH----HHHHHHH-hCCCCceeEEeeccCCC
Q 011507 142 VIEVSDVILEVLDARDPLG--------TRCID----MEKMVMK-AGPDKHLVLLLNKIDLV 189 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~--------~r~~~----le~~i~~-~~~~K~~IlVLNKiDLv 189 (484)
..+.+|.||+|+|..++-. .+-.+ ++.++.. ...+.|+|||+||+||.
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCch
Confidence 4578999999999988532 11222 2222211 12468999999999994
No 444
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.29 E-value=0.058 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=16.8
Q ss_pred cceEEEEecCCCCchhHHHHHhh-cCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK-RCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~-~~~ 286 (484)
.+-.++|+|.+++|||||++.|. +..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34578999999999999999999 753
No 445
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.26 E-value=0.077 Score=48.47 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
....|+|+|.|++|||||.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999975
No 446
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.23 E-value=0.071 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred ceEEEEecCCCCchhHHHHHhhc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+..|+++|.|++||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999974
No 447
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.19 E-value=0.065 Score=48.37 Aligned_cols=22 Identities=18% Similarity=0.441 Sum_probs=20.2
Q ss_pred EEEEecCCCCchhHHHHHhhcC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.|+|+|.|++||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999864
No 448
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.16 E-value=0.067 Score=49.41 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=21.4
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|+|+|.+++||||+.+.|.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 449
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.15 E-value=0.07 Score=46.71 Aligned_cols=22 Identities=18% Similarity=0.070 Sum_probs=20.0
Q ss_pred EEEEecCCCCchhHHHHHhhcC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.|+|+|.|++||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
No 450
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.12 E-value=0.075 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEecCCCCchhHHHHHhhc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
..|+|+|.+++||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999986
No 451
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.11 E-value=0.1 Score=50.13 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.0
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.....++|+|.+|+|||||++.|.+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHh
Confidence 35568999999999999999999975
No 452
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.07 E-value=0.081 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=19.9
Q ss_pred cceEEEEecCCCCchhHHHHHhh
Q 011507 261 KSITVGVIGLPNVGKSSLINSLK 283 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~ 283 (484)
.+-.++++|.+++|||||++.+.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34568999999999999999865
No 453
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=91.95 E-value=0.11 Score=52.83 Aligned_cols=56 Identities=21% Similarity=0.273 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhcCEEEEEEecCCCCCCCCHHHHHHHHHhC---CCCceeEEeeccCCC
Q 011507 133 RAFYKELVKVIEVSDVILEVLDARDPLGTRCIDMEKMVMKAG---PDKHLVLLLNKIDLV 189 (484)
Q Consensus 133 k~~~~el~kvie~sDvIleVlDARdPl~~r~~~le~~i~~~~---~~K~~IlVLNKiDLv 189 (484)
+.+.+++...+..+|+|++|+|+.+|+.. ...++..+...+ ..+|.++++||+|.-
T Consensus 137 ~~~g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 137 RGRGKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp -CHHHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred hHHHHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 44556788899999999999999998642 222333333321 357889999999964
No 454
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.91 E-value=0.078 Score=49.70 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=22.6
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.+-.++|+|..++|||||++.|.|-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999864
No 455
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=91.87 E-value=0.086 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=22.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|+|+|.+++|||||.+.|.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999865
No 456
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.77 E-value=0.088 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.6
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..|.|+|+|++||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999999864
No 457
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.75 E-value=0.088 Score=47.93 Aligned_cols=25 Identities=28% Similarity=0.224 Sum_probs=22.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
++..|+|.|.|++||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999854
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.74 E-value=0.043 Score=49.38 Aligned_cols=23 Identities=22% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEecCCCCchhHHHHHhhcCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.|+|+|.+|+|||||++.|.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
No 459
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.72 E-value=0.091 Score=49.65 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|--
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578999999999999999999864
No 460
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.72 E-value=0.087 Score=46.95 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred ceEEEEecCCCCchhHHHHHhhc
Q 011507 262 SITVGVIGLPNVGKSSLINSLKR 284 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~ 284 (484)
+..|.|.|.|++||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 461
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.71 E-value=0.089 Score=47.96 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
++..|+|+|.|++||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999853
No 462
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.71 E-value=0.091 Score=49.71 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999864
No 463
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.69 E-value=0.087 Score=52.09 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.2
Q ss_pred cccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 259 IKKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 259 ~~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
...+..|||+|.+++|||||++.|.+.-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 3456789999999999999999999753
No 464
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.64 E-value=0.075 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|+|+|.|++||||+.+.|.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999764
No 465
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.64 E-value=0.07 Score=48.75 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEecCCCCchhHHHHHhhcCc
Q 011507 264 TVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.++|+|.+++|||||++.|.+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999999764
No 466
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.60 E-value=0.096 Score=46.94 Aligned_cols=25 Identities=36% Similarity=0.570 Sum_probs=22.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|+|+|.|++||||+.+.|...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 467
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.58 E-value=0.087 Score=50.03 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=21.8
Q ss_pred eEEEEecCCCCchhHHHHHhhcCc
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
-.++|+|..++|||||++.|.|--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999999864
No 468
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.55 E-value=0.093 Score=47.46 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=21.8
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+..|+|+|.|++||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999865
No 469
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.54 E-value=0.092 Score=46.81 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEecCCCCchhHHHHHhhcC
Q 011507 264 TVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 264 ~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.|.|+|.|++||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 470
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.54 E-value=0.1 Score=47.40 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+..|+|.|.|++||||+.+.|...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999864
No 471
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=91.49 E-value=0.16 Score=44.47 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=30.3
Q ss_pred cCHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcCc
Q 011507 241 LGAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 241 ~g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.|.+..++.+....... ....+.|+|.||+|||+|++.+...-
T Consensus 25 ~g~~~~~~~l~~~l~~~---~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRR---TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CSCHHHHHHHHHHHTSS---SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcC---CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45555555555544332 24568999999999999999998653
No 472
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.46 E-value=0.1 Score=49.45 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=22.9
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999864
No 473
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.45 E-value=0.094 Score=48.22 Aligned_cols=39 Identities=31% Similarity=0.375 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhhhhhcccccceEEEEecCCCCchhHHHHHhhcC
Q 011507 242 GAETLIKLLKNYSRSHEIKKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 242 g~~~Ll~~Lk~~~~~~~~~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
|.+.|-.+|. +++...-.++|+|.+++|||||++.|.+.
T Consensus 10 G~~~LD~~l~-----ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 10 GSKSLDKLLG-----GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SCHHHHHHTT-----SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CChhHHhHhc-----CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4555544443 34555667999999999999999999874
No 474
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.38 E-value=0.1 Score=48.24 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+++.|+|+|.|++||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 475
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.37 E-value=0.096 Score=47.66 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.2
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
...|+|+|.|++||||+...|.+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999854
No 476
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.35 E-value=0.088 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.076 Sum_probs=21.3
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
-.++|+|..++|||||++.|.|-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999987
No 477
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.34 E-value=0.1 Score=50.16 Aligned_cols=26 Identities=19% Similarity=0.374 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.+-.++|+|..++|||||++.|.|-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999864
No 478
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.31 E-value=0.1 Score=50.02 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.+-.++|+|..++|||||++.|.|-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 479
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.29 E-value=0.092 Score=49.00 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.5
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999999864
No 480
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.26 E-value=0.12 Score=46.54 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
....|+|+|.|++||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3567999999999999999999865
No 481
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.18 E-value=0.11 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999864
No 482
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=91.15 E-value=0.11 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred ceEEEEecCCCCchhHHHHHhhcC
Q 011507 262 SITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 262 ~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+..|+|+|.|++||||+.+.|...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998753
No 483
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.11 E-value=0.11 Score=46.15 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|+++|.+++||||+.+.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567999999999999999999864
No 484
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.01 E-value=0.12 Score=49.90 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|--
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44578999999999999999999864
No 485
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.97 E-value=0.12 Score=49.66 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44579999999999999999999863
No 486
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.96 E-value=0.18 Score=49.47 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+-.+++||.+|+||||+++.|.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999975
No 487
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.93 E-value=0.12 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=22.1
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.++.|+|+|.|++||||+.+.|...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999753
No 488
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.90 E-value=0.12 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.4
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
.+..|||+|.+++|||||++.|.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 489
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.89 E-value=0.12 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.4
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+.|+|.|.|++||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999999753
No 490
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=90.89 E-value=0.17 Score=50.43 Aligned_cols=51 Identities=16% Similarity=0.369 Sum_probs=34.9
Q ss_pred HhhhcCEEEEEEecCCCCCCCCHHHHHHHH---HhCCCCceeEEeeccCCCCHH
Q 011507 142 VIEVSDVILEVLDARDPLGTRCIDMEKMVM---KAGPDKHLVLLLNKIDLVPRE 192 (484)
Q Consensus 142 vie~sDvIleVlDARdPl~~r~~~le~~i~---~~~~~K~~IlVLNKiDLvp~e 192 (484)
....+|.+|+|.|+.+++......+.+.+. ...++-|+++|.||+||.+.+
T Consensus 69 yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~ 122 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSED 122 (331)
T ss_dssp HHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSH
T ss_pred hccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchh
Confidence 346899999999999982211123323232 234678999999999998743
No 491
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.88 E-value=0.12 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
+...|+|+|.|++||||+.+.|...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999753
No 492
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.88 E-value=0.12 Score=49.94 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578999999999999999999864
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.87 E-value=0.12 Score=48.61 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 494
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.87 E-value=0.11 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=20.2
Q ss_pred eEEEEecCCCCchhHHHHHhhcC
Q 011507 263 ITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 263 ~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
++|+|+|.|++||||+.+.|...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999643
No 495
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.80 E-value=0.12 Score=50.22 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34578999999999999999999864
No 496
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.77 E-value=0.12 Score=49.31 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
.+-.++|+|..++|||||++.|.|-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 497
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.77 E-value=0.12 Score=49.21 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.2
Q ss_pred cceEEEEecCCCCchhHHHHHhhcC
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..-.++|+|..++|||||++.|.|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999985
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=90.75 E-value=0.13 Score=47.99 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=23.2
Q ss_pred ccceEEEEecCCCCchhHHHHHhhcC
Q 011507 260 KKSITVGVIGLPNVGKSSLINSLKRC 285 (484)
Q Consensus 260 ~~~~~V~vvG~pNvGKSSLIN~L~~~ 285 (484)
..+..|+|+|..++|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35678999999999999999999875
No 499
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.74 E-value=0.12 Score=48.83 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=22.7
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999999864
No 500
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.71 E-value=0.13 Score=49.74 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=22.8
Q ss_pred cceEEEEecCCCCchhHHHHHhhcCc
Q 011507 261 KSITVGVIGLPNVGKSSLINSLKRCH 286 (484)
Q Consensus 261 ~~~~V~vvG~pNvGKSSLIN~L~~~~ 286 (484)
..-.++|+|..++|||||++.|.|-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999999864
Done!