Query 011510
Match_columns 484
No_of_seqs 180 out of 504
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03619 Solute_trans_a: Organ 100.0 3E-77 6.5E-82 595.9 30.1 269 18-302 1-274 (274)
2 KOG2641 Predicted seven transm 100.0 5.9E-77 1.3E-81 612.8 31.6 325 15-364 30-358 (386)
3 COG3833 MalG ABC-type maltose 68.9 87 0.0019 32.3 12.3 81 15-116 69-161 (282)
4 KOG3979 FGF receptor activatin 51.6 59 0.0013 33.8 7.7 90 14-105 169-259 (296)
5 KOG2927 Membrane component of 46.7 14 0.0003 39.2 2.4 11 255-265 261-271 (372)
6 PF03595 SLAC1: Voltage-depend 44.6 2.5E+02 0.0053 28.6 11.1 62 16-77 168-229 (330)
7 COG2864 FdnI Cytochrome b subu 42.5 84 0.0018 31.3 7.0 75 5-92 99-174 (218)
8 PF03669 UPF0139: Uncharacteri 39.7 2.2E+02 0.0048 25.1 8.5 81 3-109 13-97 (103)
9 KOG3088 Secretory carrier memb 36.0 4.2E+02 0.0092 27.7 10.9 21 244-265 202-222 (313)
10 COG1480 Predicted membrane-ass 35.4 5.7E+02 0.012 29.8 12.8 76 24-100 277-362 (700)
11 PF07301 DUF1453: Protein of u 30.8 2.7E+02 0.0058 26.3 7.9 69 28-103 6-74 (148)
12 PF14333 DUF4389: Domain of un 30.4 1.1E+02 0.0025 25.4 4.9 39 52-104 2-40 (80)
13 PF14126 DUF4293: Domain of un 30.0 4.5E+02 0.0099 24.4 10.2 52 24-79 55-108 (149)
14 PF10277 Frag1: Frag1/DRAM/Sfk 28.0 4.9E+02 0.011 24.2 9.6 92 13-104 115-207 (215)
15 PRK11056 hypothetical protein; 27.6 1.7E+02 0.0038 26.6 5.8 54 26-79 37-90 (120)
16 PF00558 Vpu: Vpu protein; In 26.2 85 0.0018 26.7 3.5 35 24-60 9-43 (81)
17 PF11810 DUF3332: Domain of un 25.0 93 0.002 30.0 4.0 48 28-75 14-65 (176)
18 PF07226 DUF1422: Protein of u 23.8 2.2E+02 0.0047 25.8 5.7 53 26-78 37-89 (117)
19 PRK06649 V-type ATP synthase s 22.6 3.4E+02 0.0073 25.5 7.0 56 17-72 76-136 (143)
20 PF13850 ERGIC_N: Endoplasmic 22.3 54 0.0012 28.1 1.7 30 24-53 21-50 (96)
21 PF15049 DUF4534: Protein of u 20.6 2.6E+02 0.0057 26.7 5.9 29 23-51 6-34 (163)
22 PF06609 TRI12: Fungal trichot 20.1 1.3E+03 0.029 26.3 16.6 68 168-236 239-308 (599)
No 1
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=100.00 E-value=3e-77 Score=595.94 Aligned_cols=269 Identities=41% Similarity=0.840 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCchhhhhHHHHHHHHHHHHHH
Q 011510 18 PIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTVSIDCEILRDCYESFAMYC 97 (484)
Q Consensus 18 ~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Prasiy~d~iRd~YEAfvLY~ 97 (484)
|+|++++||+|+++|+++|+++|++|++||++|++||+|+||++|+|+||++||+|+++||+++|++++|||||||++|+
T Consensus 1 ~~~~~~ia~~~~~~~~~is~~~i~~hl~~y~~P~~Qr~iirIl~m~Piyai~S~~sl~~p~~~~~~~~ir~~Yea~~ly~ 80 (274)
T PF03619_consen 1 HTWAWIIAGIFALLTILISLFLIYQHLRNYSKPEEQRYIIRILLMVPIYAICSLLSLLFPRAAIYLDFIRDCYEAFVLYS 80 (274)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcccCCCccccccccCCcccCCccc---cccccccccChHHHHHHHhhhhhhhHHHHH
Q 011510 98 FGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPM---NYILKPWELGRWFYQLVKIGIVQYMIIKSL 174 (484)
Q Consensus 98 F~~LLi~ylGGe~~~i~~Le~~~~~~~~~~~l~~~~~~~~~~h~~P~---~ccl~~~~l~~~fl~~~K~gVLQy~IvKPl 174 (484)
|++||++|+|||+++++.+++ +++.+|+||+ |||+|++++|++++++||+||+||+++||+
T Consensus 81 F~~Ll~~y~gg~~~~~~~l~~----------------~~~~~~~~P~~~~~~c~~~~~~~~~~l~~~k~~VlQ~~vvrpl 144 (274)
T PF03619_consen 81 FFSLLLNYLGGEEALVEVLSG----------------KPPIKHPWPCCCCCCCLPPWPMTKRFLRRCKWGVLQYVVVRPL 144 (274)
T ss_pred HHHHHHHHhCCHHHHHHHhhc----------------CCCCCCCCcccccccCCCccccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887752 4456689998 366799999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCccccccccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCcchhhHHHHHHHHHHHHHHHH
Q 011510 175 TALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVAI 254 (484)
Q Consensus 175 ~ailaiIl~~~GvY~eg~~s~~~~ylyl~iI~niSv~lALY~Lv~FY~atke~L~~~kPl~KFl~IK~IVFltfwQgvii 254 (484)
+++++++++++|+||||+++++.+|+|+++++|+|+++|||||++||+++|++|+++||++||+|+|+|||++|||+++|
T Consensus 145 ~~~i~iil~~~g~y~~~~~~~~~~~~~l~ii~~iS~~~Aly~L~~fy~~~~~~L~~~~p~~KF~~iK~vvfl~f~Q~~ii 224 (274)
T PF03619_consen 145 LSIISIILEAFGVYCEGSFSPHSAYLYLTIINNISVTLALYGLVIFYRATKEELKPYRPLLKFLCIKLVVFLSFWQGFII 224 (274)
T ss_pred HHHHHHHHHHHHHhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCc-ch-hhHHHHHhhHHHHHHHHHHHHHHhhccccccc
Q 011510 255 ALLYSLGLFKSPIA-QG-LQFKSSVQDFIICIEMAIASIVHLYVFPAKPY 302 (484)
Q Consensus 255 siL~~~GvI~~~~~-~~-~~~~~~iqnfLICiEM~ifAilh~~AFp~~pY 302 (484)
++|.+.|++++... +. .++++++||+|+|+||+++|++|+||||++||
T Consensus 225 ~iL~~~g~i~~~~~~~~~~~~~~~i~~~LicvEM~i~ai~~~~af~~~~y 274 (274)
T PF03619_consen 225 SILASFGVIPCTPPWSSPEDIASGIQNFLICVEMFIFAILHRYAFPYSPY 274 (274)
T ss_pred HHHHHCCCcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 99999999998543 22 38999999999999999999999999999998
No 2
>KOG2641 consensus Predicted seven transmembrane receptor - rhodopsin family [Signal transduction mechanisms]
Probab=100.00 E-value=5.9e-77 Score=612.83 Aligned_cols=325 Identities=38% Similarity=0.615 Sum_probs=294.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCchhhhhHHHHHHHHHHH
Q 011510 15 YATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTVSIDCEILRDCYESFA 94 (484)
Q Consensus 15 ~~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Prasiy~d~iRd~YEAfv 94 (484)
..+++|+..+|+.|+++|+++|+++|++||+||+||++||+|+||++|+||||+.||+||+.|++++|++.+||||||||
T Consensus 30 ~~~~~~~~~~a~~f~vit~~ls~~~I~~HL~~y~~P~~qr~iv~il~mvPIys~~S~vsl~~p~~~~~~~~vr~~Yeaf~ 109 (386)
T KOG2641|consen 30 TFLLTVALAIASFFVVITILLSLFHIYQHLRYYSNPREQRPIVRILFMVPIYSVASFVSLLVPRVAFYLDTVRECYEAFV 109 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhchhhhhhhhhHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhcccCCCccccccccCCcccCCccccccccccc-cChHHHHHHHhhhhhhhHHHH
Q 011510 95 MYCFGRYLVACLGGEERTIEFMEREGRASHKAPLLEHNSERGIVTHPFPMNYILKPWE-LGRWFYQLVKIGIVQYMIIKS 173 (484)
Q Consensus 95 LY~F~~LLi~ylGGe~~~i~~Le~~~~~~~~~~~l~~~~~~~~~~h~~P~~ccl~~~~-l~~~fl~~~K~gVLQy~IvKP 173 (484)
||+|++||++|+|||++++..++++. .+.+|++|+|||+||+. +++.++++||+||+||+|+||
T Consensus 110 ly~F~sLl~~ylGGe~~~v~~l~~~~---------------~~~~~~~P~cc~~~p~~~~~~~~lr~~K~~vlQ~~ivkp 174 (386)
T KOG2641|consen 110 LYVFLSLLFHYLGGEQNIVTELEGRL---------------IRVNHTPPFCCFFPPTVRLTPKFLRRCKQGVLQYPIVKP 174 (386)
T ss_pred HHHHHHHHHHHcCChHHHHHHHhccC---------------CcccCCCCceeccCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887532 22589999998888775 899999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCccccccccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCcchhhHHHHHHHHHHHHHHH
Q 011510 174 LTALLAVVLEAFNVYCEGEFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAKFLTFKSIVFLTWWQGVA 253 (484)
Q Consensus 174 l~ailaiIl~~~GvY~eg~~s~~~~ylyl~iI~niSv~lALY~Lv~FY~atke~L~~~kPl~KFl~IK~IVFltfwQgvi 253 (484)
++++++++++++|+|++|++++ |+|+.+++|+|+++|||||.+||+++|++|+||+|++||+|+|+|||++||||++
T Consensus 175 ~~~lv~lvl~~~g~y~~g~~~~---~~~~~~i~n~S~~lalY~L~~fy~~~~~~L~py~p~~KF~~vk~ivf~~~wQg~v 251 (386)
T KOG2641|consen 175 FLALVTLVLYAFGVYDDGDFSV---YLYLTIIYNCSVSLALYSLVLFYTVTKDELSPYQPVVKFLCVKLIVFLSFWQGIV 251 (386)
T ss_pred HHHHHHHHHHHhcccccCCccc---eehhHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCCcch-hhHHHHHhhHHHHHHHHHHHHHHhhcccccccccccccccCcccccccc-ccCCCCCccccc
Q 011510 254 IALLYSLGLFKSPIAQG-LQFKSSVQDFIICIEMAIASIVHLYVFPAKPYEQMGECFSGDISVLGDY-SADCPLDPDEIR 331 (484)
Q Consensus 254 isiL~~~GvI~~~~~~~-~~~~~~iqnfLICiEM~ifAilh~~AFp~~pY~~~~~~~~~~~~~~~d~-~~~~~~~~~~~~ 331 (484)
+++|...|.+++...+. ...++++||++||+||+++|++|+||||++||....++.. |+ +.+.....+..+
T Consensus 252 i~~l~~~g~~~~~~~~~~~~~~~~iQnfiiciEM~i~ai~~~~af~~~~ya~~~~~~~-------~~~~~~~~~~~~~~~ 324 (386)
T KOG2641|consen 252 LAILVKLGKIGPSYFDEVGTVAYGIQNFLICIEMLIAAIAHFYAFPAAPYALFDERSC-------DYRSVDMFSISSSLW 324 (386)
T ss_pred HHHHHHhcccCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHhCCcchhcccccccc-------ccccccccccchHHH
Confidence 99999999998654442 4789999999999999999999999999999987554432 44 555566667788
Q ss_pred ccCCccccccCCC-CCCCcccccccccccceeec
Q 011510 332 DSERPTKLRLPQP-DVDIKSGMTIRESVRDVFVG 364 (484)
Q Consensus 332 ~~~~~~~~~~~~~-~~~~~~~~~~~~s~~d~~~~ 364 (484)
|+.+|+....... +.+.+.+...++|.||+..+
T Consensus 325 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 358 (386)
T KOG2641|consen 325 DSLMPNDLCSDAIRNFSPTYQDYTPQSDQDALSA 358 (386)
T ss_pred HhhcccCcccccccCCCcccccccccccCccccC
Confidence 8888887776643 55566678899999998776
No 3
>COG3833 MalG ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism]
Probab=68.91 E-value=87 Score=32.34 Aligned_cols=81 Identities=19% Similarity=0.398 Sum_probs=49.1
Q ss_pred CchHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHh--hhhhhhhh-------HHHHHhHhhhhcCchhhh
Q 011510 15 YATPIWA---SLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFL--IGVILMVP-------CYAVESFVSLTNPTVSID 82 (484)
Q Consensus 15 ~~~~~~a---~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~I--IRIL~MvP-------IYAi~S~lSL~~Prasiy 82 (484)
..+..|. +++|++.+++++.++...=+ -+.+|+-|-++.-+ .-|+-|+| +|.+...+.+
T Consensus 69 ~~y~~W~~Nsliva~~t~~i~v~~~~~~aY-afSR~rF~GRk~~L~~~LilqMfP~~~aliAlY~l~~~lgl-------- 139 (282)
T COG3833 69 FPYLLWLWNSLIVALITAAITVALVTLAAY-AFSRYRFKGRKYLLKFFLILQMFPGVAALIALYVLLKLLGL-------- 139 (282)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 3445554 57899999988888876555 46677877555444 34555666 3333333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q 011510 83 CEILRDCYESFAMYCFGRYLVACLGGEERTIEFM 116 (484)
Q Consensus 83 ~d~iRd~YEAfvLY~F~~LLi~ylGGe~~~i~~L 116 (484)
+=+...|++.|.||--..-..+
T Consensus 140 ------------lnt~~gLil~Y~gG~ip~nt~l 161 (282)
T COG3833 140 ------------LNTLWGLILAYLGGAIPMNTWL 161 (282)
T ss_pred ------------hhhHHHHHHHHhcCchHHHHHH
Confidence 2235567888999876554444
No 4
>KOG3979 consensus FGF receptor activating protein 1 [Signal transduction mechanisms]
Probab=51.60 E-value=59 Score=33.81 Aligned_cols=90 Identities=12% Similarity=0.009 Sum_probs=56.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhh-hhcCchhhhhHHHHHHHHH
Q 011510 14 AYATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVS-LTNPTVSIDCEILRDCYES 92 (484)
Q Consensus 14 ~~~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lS-L~~Prasiy~d~iRd~YEA 92 (484)
+..+|.....+=++|...-++.|.+++.-|-.+|..|+-|+..-|=+...-++=+++..+ ..+++.-+||..- .|+.
T Consensus 169 ~~~lha~~Fg~f~ic~~~~ml~s~il~~~~~~~y~~~~g~~s~~~kil~~lv~~~~~~s~~~~~~~~~~~C~~~--ay~~ 246 (296)
T KOG3979|consen 169 IGKLHALGFGVFLICSHILMLDSTILFTWTWKGYVSPHGPLSWRWKILTFLVMVFSFPSGAIFYIRHNVYCEPG--AYTL 246 (296)
T ss_pred CceeehhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcCCCcceeehhhHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHH
Confidence 334555444444555556678899999999999999998886643322222222222222 2246677778776 7888
Q ss_pred HHHHHHHHHHHHh
Q 011510 93 FAMYCFGRYLVAC 105 (484)
Q Consensus 93 fvLY~F~~LLi~y 105 (484)
|+|+.+-.-.++.
T Consensus 247 fAi~ey~sV~~n~ 259 (296)
T KOG3979|consen 247 FAILEYSSVFLNS 259 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 8888876555443
No 5
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.70 E-value=14 Score=39.21 Aligned_cols=11 Identities=27% Similarity=0.486 Sum_probs=5.5
Q ss_pred HHHHHcCCCCC
Q 011510 255 ALLYSLGLFKS 265 (484)
Q Consensus 255 siL~~~GvI~~ 265 (484)
.++...|++.+
T Consensus 261 NL~eDvGfleS 271 (372)
T KOG2927|consen 261 NLTEDVGFLES 271 (372)
T ss_pred chhhhhhHHHh
Confidence 34455555544
No 6
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=44.58 E-value=2.5e+02 Score=28.58 Aligned_cols=62 Identities=15% Similarity=0.149 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcC
Q 011510 16 ATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNP 77 (484)
Q Consensus 16 ~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~P 77 (484)
..+....+.-|+-.++.+++.....++...+-..|+.++.-++|..-+|-.+..+++.+--.
T Consensus 168 ~~~~~~~~~~g~G~~l~l~~~~~~~~Rl~~~~~~~~~~~p~~~I~~gP~~~~~~a~~~l~~~ 229 (330)
T PF03595_consen 168 WIIVISYFLFGIGFFLYLILFALVLYRLIFHGLPPAALRPTLFIFLGPPGLSALAYLSLGKA 229 (330)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHS---G-GGGGGGGGGGHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCeeeecchHHHHHHHHHHhccc
Confidence 34556666666666777777777778887777778899999999999999999999998743
No 7
>COG2864 FdnI Cytochrome b subunit of formate dehydrogenase [Energy production and conversion]
Probab=42.51 E-value=84 Score=31.35 Aligned_cols=75 Identities=15% Similarity=0.214 Sum_probs=62.2
Q ss_pred CC-CccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCchhhhh
Q 011510 5 SY-HNLVSLFAYATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTVSIDC 83 (484)
Q Consensus 5 ~~-~~~~~~~~~~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Prasiy~ 83 (484)
++ +++|=.+.++.-+..++...+.+.+.+++|...|+ +-|.-|..+...+|+-.+++-.+-.+++..
T Consensus 99 ~g~~~~p~~g~Yn~GqKl~fw~~~l~~~~l~iTGivmw---~~y~~~~~~i~~~r~s~l~h~~~a~~l~~~--------- 166 (218)
T COG2864 99 GGEGEVPDVGKYNAGQKLLFWTAILAIVLLLITGIVIW---RPYFAPYFSIPLLRLSLLLHAFAAVILIFI--------- 166 (218)
T ss_pred CCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHH---hhhccccccHHHHHHHHHHHHHHHHHHHHH---------
Confidence 45 78898999999999999999999999999998884 778888899999999999888887766654
Q ss_pred HHHHHHHHH
Q 011510 84 EILRDCYES 92 (484)
Q Consensus 84 d~iRd~YEA 92 (484)
.+-.+|-|
T Consensus 167 -~~vHiy~a 174 (218)
T COG2864 167 -IIVHIYMA 174 (218)
T ss_pred -HHHHHHHH
Confidence 45556666
No 8
>PF03669 UPF0139: Uncharacterised protein family (UPF0139); InterPro: IPR005351 This is a small family of proteins of unknown function which appear to be related to the hypothetical protein CG10674 from Drosophila melanogaster (Fruit fly)(Q9VRJ8 from SWISSPROT).
Probab=39.68 E-value=2.2e+02 Score=25.06 Aligned_cols=81 Identities=15% Similarity=0.220 Sum_probs=46.5
Q ss_pred ccCCCcccccc----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCc
Q 011510 3 IASYHNLVSLF----AYATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPT 78 (484)
Q Consensus 3 ~~~~~~~~~~~----~~~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Pr 78 (484)
|.+|++-+... ....+.+.-+++-+|.+.++.+ ++|++-|+-+ +.++.||+.. +
T Consensus 13 i~~y~~p~~~~~~~~ed~~~Dy~~~L~~~~~m~gl~m----------------r~K~~aW~al---~~s~~S~an~---k 70 (103)
T PF03669_consen 13 IVPYKPPPASPNQPQEDPPPDYMSFLGMIFSMAGLMM----------------RNKWCAWAAL---FFSCQSFANM---K 70 (103)
T ss_pred cccCCCCCCcccccccccchHHHHHHHHHHHHHHHHH----------------HhHHHHHHHH---HHHHHHHHcC---C
Confidence 55666666544 3445666666777776666653 3455555433 3444444443 3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 011510 79 VSIDCEILRDCYESFAMYCFGRYLVACLGGE 109 (484)
Q Consensus 79 asiy~d~iRd~YEAfvLY~F~~LLi~ylGGe 109 (484)
. -+-.++.+-+ +..+++.+..+|+|..
T Consensus 71 ~---~~d~kq~~ss-~m~sv~alvm~Yl~~~ 97 (103)
T PF03669_consen 71 S---SNDTKQISSS-FMFSVMALVMSYLQPP 97 (103)
T ss_pred c---cccchHHHHH-HHHHHHHHHHHHcCCC
Confidence 3 1223555555 4678888999999754
No 9
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.04 E-value=4.2e+02 Score=27.74 Aligned_cols=21 Identities=19% Similarity=0.616 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCCC
Q 011510 244 VFLTWWQGVAIALLYSLGLFKS 265 (484)
Q Consensus 244 VFltfwQgviisiL~~~GvI~~ 265 (484)
.|++|.=-+++.++...| +++
T Consensus 202 FFF~y~~q~~~~v~qAvg-f~g 222 (313)
T KOG3088|consen 202 FFFTYFFQIVFCVFQAVG-FPG 222 (313)
T ss_pred HHHHHHHHHHHHHHHHHc-cCC
Confidence 377777778888888887 444
No 10
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=35.44 E-value=5.7e+02 Score=29.83 Aligned_cols=76 Identities=12% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHh----------hhhcCchhhhhHHHHHHHHHH
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFV----------SLTNPTVSIDCEILRDCYESF 93 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~l----------SL~~Prasiy~d~iRd~YEAf 93 (484)
+++...+++.++.++..+ --+.+.+++.....++.+..+-++.+..+. +++.|-+...+-.+--+.+-+
T Consensus 277 ~~~~~~~v~~li~lf~~y-~~~~~~~~~~~~~~l~~~~~l~i~~l~l~~iv~~~~~~~~~~l~p~a~~~~l~~~lv~~r~ 355 (700)
T COG1480 277 LLGLLILVIFLILLFALY-ERRTKSPLKLRNSLLLLYLSLAILTLSLLRIVGYFNYSASGLLVPPALGPMLLILLVFLRI 355 (700)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhccCHHhhhhHHHHHHHHHHHHHHHHhccccccchhhhhccchHHHHHHHHHHHHhhH
Confidence 455555555555555522 233334444444555555444444443332 333444444444455555555
Q ss_pred HHHHHHH
Q 011510 94 AMYCFGR 100 (484)
Q Consensus 94 vLY~F~~ 100 (484)
++..+++
T Consensus 356 ~i~~s~~ 362 (700)
T COG1480 356 AIFSSSM 362 (700)
T ss_pred HHHHHHH
Confidence 6555543
No 11
>PF07301 DUF1453: Protein of unknown function (DUF1453); InterPro: IPR009916 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown. Members of this family seem to be found exclusively in the Order Bacillales.
Probab=30.80 E-value=2.7e+02 Score=26.25 Aligned_cols=69 Identities=17% Similarity=0.356 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCchhhhhHHHHHHHHHHHHHHHHHHHH
Q 011510 28 LVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLV 103 (484)
Q Consensus 28 f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Prasiy~d~iRd~YEAfvLY~F~~LLi 103 (484)
..++++++.+.-++.-.++-.+|..-|+ +.+||+.-.++.+-+.+|-... +.-+.-||+++-.+|++.+
T Consensus 6 s~~~~i~m~~~vi~~R~ka~~rP~~~kk----IIlPplfmstG~lmf~~P~~~~---~~~~~l~A~~~G~lFs~~L 74 (148)
T PF07301_consen 6 SIIIAIVMALLVIFIRMKASKRPVNGKK----IILPPLFMSTGFLMFVFPFFRP---PWLEVLEAFLVGALFSYPL 74 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCcch----HHHhHHHHHHHHHHHhCccccc---hHHHHHHHHHHHHHHHHHH
Confidence 3445555666666777888888975554 4579999999999999997666 4458889999888877654
No 12
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=30.38 E-value=1.1e+02 Score=25.40 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=27.7
Q ss_pred hhHHhhhhhhhhhHHHHHhHhhhhcCchhhhhHHHHHHHHHHHHHHHHHHHHH
Q 011510 52 EQKFLIGVILMVPCYAVESFVSLTNPTVSIDCEILRDCYESFAMYCFGRYLVA 104 (484)
Q Consensus 52 ~Qr~IIRIL~MvPIYAi~S~lSL~~Prasiy~d~iRd~YEAfvLY~F~~LLi~ 104 (484)
.+....|+++|+|.+-+.++.+. .-.+.++.+|+..++.
T Consensus 2 r~~~~~R~l~mi~~~ivl~~~~~--------------~~~~~~~~q~~~~L~t 40 (80)
T PF14333_consen 2 REAVWLRLLLMIPFAIVLSLASI--------------VLGVLVLIQWFAILFT 40 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHc
Confidence 35577999999999888877766 4455666666655543
No 13
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=30.02 E-value=4.5e+02 Score=24.38 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhh--hhhhhhHHHHHhHhhhhcCch
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIG--VILMVPCYAVESFVSLTNPTV 79 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIR--IL~MvPIYAi~S~lSL~~Pra 79 (484)
..++..+++.++|++.|+ -|+|-..|..+++ +++|+-.|+...+.++-.+..
T Consensus 55 ~l~il~~l~~~lal~aIF----lyKnR~lQ~~L~~~nill~~~~~~~~~~~~~~~~~~ 108 (149)
T PF14126_consen 55 PLFILLVLSAILALIAIF----LYKNRKLQIRLCVLNILLNVGLYGLFAYFSLNLSGE 108 (149)
T ss_pred HHHHHHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 566677778888888888 4788889998877 777777777777766655543
No 14
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=27.96 E-value=4.9e+02 Score=24.23 Aligned_cols=92 Identities=11% Similarity=0.047 Sum_probs=48.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCchhh-hhHHHHHHHH
Q 011510 13 FAYATPIWASLIAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTVSI-DCEILRDCYE 91 (484)
Q Consensus 13 ~~~~~~~~a~~iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Prasi-y~d~iRd~YE 91 (484)
+....|.....+.-++..+...+..++.++...++.+-......+|+.+.+-.....-....+++.... +...+....|
T Consensus 115 ~~~~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~ai~E 194 (215)
T PF10277_consen 115 EHPTVHYIGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLVISIICFISFIVFFILHNFYGAYSIFAIFE 194 (215)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Confidence 344567777667777777777777777766666553333444556665544433222222222333222 2445556666
Q ss_pred HHHHHHHHHHHHH
Q 011510 92 SFAMYCFGRYLVA 104 (484)
Q Consensus 92 AfvLY~F~~LLi~ 104 (484)
=....++..++..
T Consensus 195 w~~~~~~~~f~~t 207 (215)
T PF10277_consen 195 WVLVFSNILFFLT 207 (215)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555544443
No 15
>PRK11056 hypothetical protein; Provisional
Probab=27.59 E-value=1.7e+02 Score=26.57 Aligned_cols=54 Identities=19% Similarity=0.343 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCch
Q 011510 26 GVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPTV 79 (484)
Q Consensus 26 g~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Pra 79 (484)
.+|-++|+++|.|-.+|+..|...|+.=-.+..-.+.+=++.-..++--=+|+.
T Consensus 37 SiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPei 90 (120)
T PRK11056 37 SIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEI 90 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 467899999999999999999999986544444444444444444444445553
No 16
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=26.23 E-value=85 Score=26.68 Aligned_cols=35 Identities=14% Similarity=0.366 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhh
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVI 60 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL 60 (484)
+.++.+++.+.+-.|.+ -+..|.+-..||+|-|.+
T Consensus 9 iialiv~~iiaIvvW~i--v~ieYrk~~rqrkId~li 43 (81)
T PF00558_consen 9 IIALIVALIIAIVVWTI--VYIEYRKIKRQRKIDRLI 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHH--H------------CHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHH
Confidence 33444444444555555 489999999999987754
No 17
>PF11810 DUF3332: Domain of unknown function (DUF3332); InterPro: IPR021768 This family of proteins are functionally uncharacterised. This family is only found in bacteria.
Probab=25.01 E-value=93 Score=29.97 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChh----hhHHhhhhhhhhhHHHHHhHhhhh
Q 011510 28 LVVVTLSLSMYLLFDHLSAYKNPE----EQKFLIGVILMVPCYAVESFVSLT 75 (484)
Q Consensus 28 f~lla~~iS~~~I~~HL~~Yt~P~----~Qr~IIRIL~MvPIYAi~S~lSL~ 75 (484)
.+.++-++.-+-+..-+.+++.-. .=|.++-.++++|+|+|+.+.=++
T Consensus 14 ~~~lsgC~Gsfalt~kl~~~N~~~vdnKf~r~lvf~~~i~PVYgi~~~aD~l 65 (176)
T PF11810_consen 14 SLSLSGCMGSFALTNKLYKWNKGVVDNKFVRELVFLFLISPVYGIAGLADLL 65 (176)
T ss_pred HHHhccccccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 334444455566777777877332 222233237889999999877665
No 18
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=23.85 E-value=2.2e+02 Score=25.84 Aligned_cols=53 Identities=19% Similarity=0.353 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhhhHHhhhhhhhhhHHHHHhHhhhhcCc
Q 011510 26 GVLVVVTLSLSMYLLFDHLSAYKNPEEQKFLIGVILMVPCYAVESFVSLTNPT 78 (484)
Q Consensus 26 g~f~lla~~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL~~Pr 78 (484)
.+|-++|++++.|-.+|+..|...|+.=-.+..-.+.+=++.-..++---+|+
T Consensus 37 SiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPe 89 (117)
T PF07226_consen 37 SIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPE 89 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchh
Confidence 46789999999999999999999998643444444443333333333333444
No 19
>PRK06649 V-type ATP synthase subunit K; Validated
Probab=22.62 E-value=3.4e+02 Score=25.46 Aligned_cols=56 Identities=16% Similarity=0.080 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hcCChhhhHHhhhhhhhhhHHHHHhHh
Q 011510 17 TPIWASLIAGVLVVVTLSLSMYLLFDHLS-----AYKNPEEQKFLIGVILMVPCYAVESFV 72 (484)
Q Consensus 17 ~~~~a~~iag~f~lla~~iS~~~I~~HL~-----~Yt~P~~Qr~IIRIL~MvPIYAi~S~l 72 (484)
...|+.+-+|+++-++...|-+.+-+-.. .=.+|+++-+-+-++.|+=.||+..++
T Consensus 76 ~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p~~f~~~ii~~~~~Et~Al~~lv 136 (143)
T PRK06649 76 TNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETGKGFANYLLVLGLIETVALFVMV 136 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999998887665 235688888888888888777776654
No 20
>PF13850 ERGIC_N: Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Probab=22.34 E-value=54 Score=28.08 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhhh
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPEEQ 53 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~~Q 53 (484)
.+|+.+++++++.+++++..+.+|.+|+..
T Consensus 21 ~Gg~iSi~~~~~~~~L~~~E~~~y~~~~~~ 50 (96)
T PF13850_consen 21 SGGIISIITIVLIVILFISELYSYLSGEIK 50 (96)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHccccee
Confidence 588999999999999999999999998754
No 21
>PF15049 DUF4534: Protein of unknown function (DUF4534)
Probab=20.57 E-value=2.6e+02 Score=26.73 Aligned_cols=29 Identities=10% Similarity=0.336 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 011510 23 LIAGVLVVVTLSLSMYLLFDHLSAYKNPE 51 (484)
Q Consensus 23 ~iag~f~lla~~iS~~~I~~HL~~Yt~P~ 51 (484)
.++|+|+++++...+..=.+|+++-.+.+
T Consensus 6 ~l~GiFsIl~Tiq~LIFe~~~l~~~~~~~ 34 (163)
T PF15049_consen 6 VLSGIFSILNTIQFLIFELNHLTHIGCED 34 (163)
T ss_pred ehhHHHHHHHHHHHHheeHhhhhcCCccc
Confidence 47999999999999888889999988764
No 22
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=20.07 E-value=1.3e+03 Score=26.33 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHhcccccC--ccccccccchhHHHHHHHHHHHHHHHHHHHHHhHhhhhhccCcch
Q 011510 168 YMIIKSLTALLAVVLEAFNVYCEG--EFKWGCGYPYMAVVLNFSQSWALYCLIQFYTVTKDELAHIKPLAK 236 (484)
Q Consensus 168 y~IvKPl~ailaiIl~~~GvY~eg--~~s~~~~ylyl~iI~niSv~lALY~Lv~FY~atke~L~~~kPl~K 236 (484)
.=++=.++.+.+++|-+.|.---| ...|++++.--.++..+- ++..++++-.|...|+.+=|++-+..
T Consensus 239 lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~-~Lv~F~~wE~~~~~~~Pl~P~~Lf~~ 308 (599)
T PF06609_consen 239 LDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFV-LLVAFVVWEWFGAPKDPLFPHRLFKD 308 (599)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHH-HHHHHHHhhhhccCCCCcCCHHHhcc
Confidence 334445555566666555543222 357888887655554443 34444666655555666777665543
Done!