Query 011510
Match_columns 484
No_of_seqs 180 out of 504
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 09:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_L VIIIA, cytochrome C oxi 18.9 1.4E+02 0.0049 21.6 4.2 12 4-15 6-17 (47)
2 2y69_L Cytochrome C oxidase su 16.5 2.5E+02 0.0087 21.5 5.3 11 5-15 23-33 (63)
3 1v54_M VIIIB, IX, cytochrome C 13.8 1.3E+02 0.0044 21.9 2.8 28 24-51 17-44 (46)
4 3d8m_A BPP, baseplate protein, 10.3 1.9E+02 0.0066 26.4 3.4 53 380-439 7-60 (165)
5 2y69_M Cytochrome C oxidase po 10.2 2.4E+02 0.0081 22.3 3.5 28 24-51 41-68 (70)
6 1zl8_A LIN-7; heterodimer, alp 9.2 1.2E+02 0.0042 22.6 1.3 14 79-92 38-51 (53)
7 3ddl_A Xanthorhodopsin; carote 8.5 9.7E+02 0.033 22.9 8.0 31 44-74 36-66 (273)
8 4htp_A DNA ligase 4; helical d 7.3 2E+02 0.0068 27.2 2.4 22 40-61 170-191 (240)
9 3v5w_G G gamma-I, guanine nucl 6.4 1.8E+02 0.006 23.4 1.2 17 430-446 52-68 (77)
10 3tlw_A GLR4197 protein, GLIC; 6.3 1.1E+03 0.036 22.5 7.2 37 7-43 248-284 (321)
No 1
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=18.89 E-value=1.4e+02 Score=21.60 Aligned_cols=12 Identities=8% Similarity=-0.105 Sum_probs=9.1
Q ss_pred cCCCccccccCC
Q 011510 4 ASYHNLVSLFAY 15 (484)
Q Consensus 4 ~~~~~~~~~~~~ 15 (484)
-||+|||+.-..
T Consensus 6 gp~sNLPF~~~n 17 (47)
T 1v54_L 6 GPGKNIPFSVEN 17 (47)
T ss_dssp STTTSSSSCCSS
T ss_pred CCCCcCCcCCCc
Confidence 389999996543
No 2
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=16.50 E-value=2.5e+02 Score=21.53 Aligned_cols=11 Identities=9% Similarity=-0.130 Sum_probs=8.8
Q ss_pred CCCccccccCC
Q 011510 5 SYHNLVSLFAY 15 (484)
Q Consensus 5 ~~~~~~~~~~~ 15 (484)
||+|||+.-..
T Consensus 23 p~sNLPF~~~n 33 (63)
T 2y69_L 23 PGKNIPFSVEN 33 (63)
T ss_dssp TTTSSSSCCSS
T ss_pred CCCcCCcCCcc
Confidence 89999996653
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=13.83 E-value=1.3e+02 Score=21.95 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPE 51 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~ 51 (484)
++...+++++++----|+.||.+|.+.+
T Consensus 17 igl~v~f~~~L~PagWVLshL~~YKk~e 44 (46)
T 1v54_M 17 IGLSVTFLSFLLPAGWVLYHLDNYKKSS 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHTC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4444555566666566778999998874
No 4
>3d8m_A BPP, baseplate protein, receptor binding protein; lactococcal phage P2, lactococcal phage TP901-1, receptor BI protein; 3.35A {Lactococcus phage tp901-1}
Probab=10.34 E-value=1.9e+02 Score=26.35 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=31.8
Q ss_pred ccccccchhhhhhHHHHHhhHhhhhhhccccccCCCCcccc-CccccccccccCCCCCccc
Q 011510 380 AVEPVEKGITKFNEKIHKISQNIKRHDKDRRKTKDDSCIAS-SHTRRVIRGIDDPLLNGSI 439 (484)
Q Consensus 380 ~~~p~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 439 (484)
.-++||.|-.-|||-|-+|...+++-+.-+.++.|.+ |+= ..+..++. ++||+
T Consensus 7 iyrgm~ngae~i~~n~~~~~~e~~~~~~~v~ktgde~-i~G~KtftgdI~------v~Gsl 60 (165)
T 3d8m_A 7 VYRGMKNGAETINDDLEAINSELTSGGNVVHKTGDET-IAGKKTFTGNVE------VNGSL 60 (165)
T ss_dssp ----------CTTHHHHHHHHHTTSSTTCCCSSSCCC-CCSCCCCCSCCC------CSSCC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcCCceEEeccccc-ccccccccCceE------EcCcc
Confidence 4578999999999999999999998888777777766 433 55555544 46665
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.22 E-value=2.4e+02 Score=22.29 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKNPE 51 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~P~ 51 (484)
|+...+++++++----|+.||.+|.+.+
T Consensus 41 igltv~f~~~L~PagWVLshLe~YKk~e 68 (70)
T 2y69_M 41 IGLSVTFLSFLLPAGWVLYHLDNYKKSS 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHSCC-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 4555555566666566788999999874
No 6
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=9.17 E-value=1.2e+02 Score=22.60 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHH
Q 011510 79 VSIDCEILRDCYES 92 (484)
Q Consensus 79 asiy~d~iRd~YEA 92 (484)
-+-||..+|++||-
T Consensus 38 qSdF~~aVREVYEh 51 (53)
T 1zl8_A 38 QSEFFGAVREVYET 51 (53)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35689999999995
No 7
>3ddl_A Xanthorhodopsin; carotenoid, ION pump, light-harvesting, antenna, retinal, transport protein; HET: SXN UNL RET PX4 PCW; 1.90A {Salinibacter ruber}
Probab=8.46 E-value=9.7e+02 Score=22.94 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HhhcCChhhhHHhhhhhhhhhHHHHHhHhhh
Q 011510 44 LSAYKNPEEQKFLIGVILMVPCYAVESFVSL 74 (484)
Q Consensus 44 L~~Yt~P~~Qr~IIRIL~MvPIYAi~S~lSL 74 (484)
+...+.|...|...-+..+++..|..+++.+
T Consensus 36 ~~~~~v~~~~R~~~~v~~lit~IAai~Yf~M 66 (273)
T 3ddl_A 36 LARNNVAPKYRISMMVSALVVFIAGYHYFRI 66 (273)
T ss_dssp HGGGGSCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCCcceehhhHHHHHHHHHHHHHHHHH
Confidence 3555678788888888888888888776655
No 8
>4htp_A DNA ligase 4; helical domain, DNA binding domain, DNA, ligase-HYD complex; HET: DNA; 2.25A {Homo sapiens} PDB: 4hto_A*
Probab=7.33 E-value=2e+02 Score=27.23 Aligned_cols=22 Identities=32% Similarity=0.383 Sum_probs=16.7
Q ss_pred HHHHHhhcCChhhhHHhhhhhh
Q 011510 40 LFDHLSAYKNPEEQKFLIGVIL 61 (484)
Q Consensus 40 I~~HL~~Yt~P~~Qr~IIRIL~ 61 (484)
++..|..=..|.||||++||+.
T Consensus 170 ~l~~Ll~~~t~~E~k~liRiil 191 (240)
T 4htp_A 170 SLLQLITQSSALEQKWLIRMII 191 (240)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHh
Confidence 4445555578999999999873
No 9
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=6.42 E-value=1.8e+02 Score=23.41 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=13.0
Q ss_pred ccCCCCCccccCCcccc
Q 011510 430 IDDPLLNGSISDSAPTR 446 (484)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (484)
-+|||+.|--++.-..|
T Consensus 52 ~~DpLl~Gvp~~~NPFk 68 (77)
T 3v5w_G 52 KEDPLLTPVPASENPFR 68 (77)
T ss_dssp GGCTTTSCCCGGGCTTT
T ss_pred CCCCCcCCCCCCCCCCC
Confidence 38999998766666666
No 10
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=6.31 E-value=1.1e+03 Score=22.54 Aligned_cols=37 Identities=5% Similarity=-0.177 Sum_probs=18.1
Q ss_pred CccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011510 7 HNLVSLFAYATPIWASLIAGVLVVVTLSLSMYLLFDH 43 (484)
Q Consensus 7 ~~~~~~~~~~~~~~a~~iag~f~lla~~iS~~~I~~H 43 (484)
..||-.+...+..+-..++-+++.+|++.+....+.|
T Consensus 248 ~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~ 284 (321)
T 3tlw_A 248 TCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLK 284 (321)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4566655434444444444455555555554444433
Done!