Query 011510
Match_columns 484
No_of_seqs 180 out of 504
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 09:37:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011510.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011510hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2b5ea2 c.47.1.2 (A:142-239) P 36.7 5.4 0.00039 31.5 1.2 29 382-410 19-51 (98)
2 d1v54l_ f.23.6.1 (L:) Mitochon 26.0 58 0.0042 22.0 4.9 38 4-44 5-42 (46)
3 d1kf6d_ f.21.2.2 (D:) Fumarate 25.8 1.3E+02 0.0095 24.0 8.0 80 163-243 20-105 (119)
4 d1zl8a1 a.194.1.1 (A:4-53) Lin 13.0 36 0.0026 23.4 1.3 14 79-92 35-48 (50)
5 d1y74a1 a.194.1.1 (A:17-73) Li 11.5 46 0.0034 23.4 1.6 15 79-93 36-50 (57)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 10.0 1.5E+02 0.011 17.4 3.3 16 210-225 9-24 (26)
7 d1k8ua_ a.39.1.2 (A:) Calcycli 9.8 37 0.0027 25.4 0.6 18 383-400 3-20 (89)
8 d1ksoa_ a.39.1.2 (A:) Calcycli 8.6 45 0.0033 25.1 0.7 19 382-400 2-20 (93)
9 d1v54m_ f.23.7.1 (M:) Mitochon 8.4 1.2E+02 0.0091 20.0 2.8 26 24-49 17-42 (43)
10 d2fug21 c.47.1.21 (2:3-180) NA 8.0 1.5E+02 0.011 24.9 4.0 73 34-119 25-101 (178)
No 1
>d2b5ea2 c.47.1.2 (A:142-239) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=36.68 E-value=5.4 Score=31.46 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=21.4
Q ss_pred ccc--cchh--hhhhHHHHHhhHhhhhhhcccc
Q 011510 382 EPV--EKGI--TKFNEKIHKISQNIKRHDKDRR 410 (484)
Q Consensus 382 ~p~--e~~~--~~~~~~~~~~~~~~~~~~~~~~ 410 (484)
.|| ..|+ ..+|||||++.++...-=-+.+
T Consensus 19 ~pVVV~~Gv~d~~fNeTF~~~A~~l~~Dy~Fvs 51 (98)
T d2b5ea2 19 TPVIVQSGKIDADFNATFYSMANKHFNDYDFVS 51 (98)
T ss_dssp SCEEEEEESCCHHHHHHHHHHHHHTTTTCEEEE
T ss_pred CCEEEeCCccccchhHHHHHHHHHhhcceEEEe
Confidence 464 7787 5899999999998875444433
No 2
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.96 E-value=58 Score=21.96 Aligned_cols=38 Identities=8% Similarity=-0.040 Sum_probs=21.6
Q ss_pred cCCCccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011510 4 ASYHNLVSLFAYATPIWASLIAGVLVVVTLSLSMYLLFDHL 44 (484)
Q Consensus 4 ~~~~~~~~~~~~~~~~~a~~iag~f~lla~~iS~~~I~~HL 44 (484)
-||.||||.-..-.-..+.+++..=..++ .-++|.+|-
T Consensus 5 GPG~NLPFsv~Nk~rLla~m~~~fGsgfa---~PF~ivRhq 42 (46)
T d1v54l_ 5 GPGKNIPFSVENKWRLLAMMTLFFGSGFA---APFFIVRHQ 42 (46)
T ss_dssp STTTSSSSCCSSHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCCCCCCccchhHHHHHHHHHHHHhcccc---chHHHHHHH
Confidence 38999999887765555544333222222 234566663
No 3
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=25.80 E-value=1.3e+02 Score=24.01 Aligned_cols=80 Identities=19% Similarity=0.280 Sum_probs=56.2
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhcccccCccccccc----cchh-HHHHHHHHHHHHHH-HHHHHHHhHhhhhhccCcch
Q 011510 163 IGIVQYMIIKSLTALLAVVLEAFNVYCEGEFKWGCG----YPYM-AVVLNFSQSWALYC-LIQFYTVTKDELAHIKPLAK 236 (484)
Q Consensus 163 ~gVLQy~IvKPl~ailaiIl~~~GvY~eg~~s~~~~----ylyl-~iI~niSv~lALY~-Lv~FY~atke~L~~~kPl~K 236 (484)
-|=.=..++-|++.++.=++-..|....+..+.... +-|+ .++....+.+-||| +..+++.+|| |+=+.|..|
T Consensus 20 AGGm~~A~~~Pvlill~giLlPlG~~~~~a~~y~~i~aFa~s~iG~l~ll~~i~lplWh~~HRihHglHD-lkih~p~g~ 98 (119)
T d1kf6d_ 20 AGGMWSAIIAPVMILLVGILLPLGLFPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHD-LKIHVPAGK 98 (119)
T ss_dssp HHHHHHHHTHHHHHHHHHTTGGGTCSSTTTTSHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCTTHH
T ss_pred CCchhHHHHHHHHHHHHHHHHhcccCCccccCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcccccchh
Confidence 344556778888888888888999988776654433 3344 45666677778887 7778888776 666678899
Q ss_pred hhHHHHH
Q 011510 237 FLTFKSI 243 (484)
Q Consensus 237 Fl~IK~I 243 (484)
.+|--+.
T Consensus 99 ~~fYg~A 105 (119)
T d1kf6d_ 99 WVFYGLA 105 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876443
No 4
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]}
Probab=12.97 E-value=36 Score=23.43 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHH
Q 011510 79 VSIDCEILRDCYES 92 (484)
Q Consensus 79 asiy~d~iRd~YEA 92 (484)
-+-||+.+|++||-
T Consensus 35 qSdF~~avREVYe~ 48 (50)
T d1zl8a1 35 QSEFFGAVREVYET 48 (50)
T ss_dssp SCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35689999999995
No 5
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.55 E-value=46 Score=23.40 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHH
Q 011510 79 VSIDCEILRDCYESF 93 (484)
Q Consensus 79 asiy~d~iRd~YEAf 93 (484)
-+-||+.+|++||-.
T Consensus 36 qSdF~~avREVYehv 50 (57)
T d1y74a1 36 QSRFCSAIREVYEQL 50 (57)
T ss_dssp HSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 457899999999953
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.01 E-value=1.5e+02 Score=17.35 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhH
Q 011510 210 QSWALYCLIQFYTVTK 225 (484)
Q Consensus 210 v~lALY~Lv~FY~atk 225 (484)
..|++++|+++|..+.
T Consensus 9 ~fw~ffalli~ylqte 24 (26)
T d1rzhh2 9 SFWIFLAGLIYYLQTE 24 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4678888888887764
No 7
>d1k8ua_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a6 [TaxId: 9606]}
Probab=9.75 E-value=37 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=16.5
Q ss_pred cccchhhhhhHHHHHhhH
Q 011510 383 PVEKGITKFNEKIHKISQ 400 (484)
Q Consensus 383 p~e~~~~~~~~~~~~~~~ 400 (484)
|+|+.+..|=++||+.|.
T Consensus 3 plE~ai~~ii~vF~kya~ 20 (89)
T d1k8ua_ 3 PLDQAIGLLVAIFHKYSG 20 (89)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHcc
Confidence 899999999999999974
No 8
>d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]}
Probab=8.62 E-value=45 Score=25.14 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=17.3
Q ss_pred ccccchhhhhhHHHHHhhH
Q 011510 382 EPVEKGITKFNEKIHKISQ 400 (484)
Q Consensus 382 ~p~e~~~~~~~~~~~~~~~ 400 (484)
+|+|+-+..|=++||+.+.
T Consensus 2 ~plE~~i~~i~~vF~kya~ 20 (93)
T d1ksoa_ 2 RPLEQAVAAIVCTFQEYAG 20 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHcC
Confidence 6999999999999999974
No 9
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.35 E-value=1.2e+02 Score=20.02 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC
Q 011510 24 IAGVLVVVTLSLSMYLLFDHLSAYKN 49 (484)
Q Consensus 24 iag~f~lla~~iS~~~I~~HL~~Yt~ 49 (484)
|+-..++++++.-.--|+.||-+|.+
T Consensus 17 igLt~~f~~~L~PaGwVLshLe~YKk 42 (43)
T d1v54m_ 17 IGLSVTFLSFLLPAGWVLYHLDNYKK 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHhcc
Confidence 45555666777777778889999865
No 10
>d2fug21 c.47.1.21 (2:3-180) NADH-quinone oxidoreductase chain 2, NQO2 {Thermus thermophilus [TaxId: 274]}
Probab=8.02 E-value=1.5e+02 Score=24.94 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhcCChhhhHHhhhhhhhhh--HHHHHhHhhhhc--CchhhhhHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 011510 34 SLSMYLLFDHLSAYKNPEEQKFLIGVILMVP--CYAVESFVSLTN--PTVSIDCEILRDCYESFAMYCFGRYLVACLGGE 109 (484)
Q Consensus 34 ~iS~~~I~~HL~~Yt~P~~Qr~IIRIL~MvP--IYAi~S~lSL~~--Prasiy~d~iRd~YEAfvLY~F~~LLi~ylGGe 109 (484)
+|.+.+..|+-..|-.++.++.|=..+-|.| ||++.||-+.+. |.....+...+.. -.++.|-
T Consensus 25 li~~L~~iQ~~~Gyip~~al~~iA~~l~v~~a~V~~vatFY~~f~~~p~gk~~i~VC~~~-------------~C~~~G~ 91 (178)
T d2fug21 25 IMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVMGVASFYSYYQFVPTGKYHLQVCATL-------------SCKLAGA 91 (178)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHHHHHHHSSSSCSSCCCSEEEEEECSH-------------HHHTTTH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHHHHHhcchhcccccccceeEecCch-------------hhhhccc
Confidence 4556677788888999999999999999998 999999999885 4443322222221 2234566
Q ss_pred hHHHHHHHHh
Q 011510 110 ERTIEFMERE 119 (484)
Q Consensus 110 ~~~i~~Le~~ 119 (484)
+++++.++..
T Consensus 92 ~~l~~~l~~~ 101 (178)
T d2fug21 92 EELWDYLTET 101 (178)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHhh
Confidence 6777777654
Done!