Query 011511
Match_columns 484
No_of_seqs 547 out of 3907
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 09:39:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mky_A Probable GTP-binding pr 100.0 4.7E-37 1.6E-41 316.2 22.4 284 164-481 2-287 (439)
2 2hjg_A GTP-binding protein ENG 100.0 2.4E-37 8.2E-42 318.0 17.7 278 163-481 3-281 (436)
3 4dcu_A GTP-binding protein ENG 100.0 4E-36 1.4E-40 310.7 19.8 282 160-482 20-302 (456)
4 1puj_A YLQF, conserved hypothe 99.9 7.2E-22 2.5E-26 190.4 15.2 163 264-434 15-179 (282)
5 2dyk_A GTP-binding protein; GT 99.8 3.7E-20 1.3E-24 162.7 15.1 158 164-355 2-160 (161)
6 1wf3_A GTP-binding protein; GT 99.8 1.2E-19 4.2E-24 176.6 13.1 164 163-357 7-173 (301)
7 3ec1_A YQEH GTPase; atnos1, at 99.8 4.1E-20 1.4E-24 185.0 8.9 180 265-470 64-258 (369)
8 3iev_A GTP-binding protein ERA 99.8 4E-19 1.4E-23 173.8 15.4 167 162-358 9-183 (308)
9 2gj8_A MNME, tRNA modification 99.8 1.1E-19 3.7E-24 162.4 10.1 161 163-356 4-165 (172)
10 4dhe_A Probable GTP-binding pr 99.8 3.8E-19 1.3E-23 165.4 13.4 173 158-357 24-211 (223)
11 3h2y_A GTPase family protein; 99.8 1.2E-19 3.9E-24 181.6 9.4 181 264-470 61-257 (368)
12 3cnl_A YLQF, putative uncharac 99.8 7.4E-20 2.5E-24 174.4 6.3 145 264-435 13-159 (262)
13 3iby_A Ferrous iron transport 99.8 3E-19 1E-23 169.9 10.2 156 164-354 2-164 (256)
14 2lkc_A Translation initiation 99.8 8.4E-19 2.9E-23 156.8 10.8 156 161-357 6-171 (178)
15 1mky_A Probable GTP-binding pr 99.8 1.7E-18 5.7E-23 177.8 14.3 187 162-397 179-374 (439)
16 3gee_A MNME, tRNA modification 99.8 6.2E-19 2.1E-23 181.6 10.8 163 163-356 233-397 (476)
17 2hjg_A GTP-binding protein ENG 99.8 2.7E-18 9.3E-23 176.1 15.5 167 162-357 174-349 (436)
18 3pqc_A Probable GTP-binding pr 99.8 8.8E-18 3E-22 152.3 17.0 169 158-356 18-193 (195)
19 1svi_A GTP-binding protein YSX 99.8 6.8E-18 2.3E-22 153.4 16.2 169 158-356 18-194 (195)
20 1xzp_A Probable tRNA modificat 99.8 9.1E-19 3.1E-23 180.5 11.6 160 163-356 243-404 (482)
21 3t5g_A GTP-binding protein RHE 99.8 7.4E-19 2.5E-23 157.8 9.4 166 163-386 6-180 (181)
22 3qq5_A Small GTP-binding prote 99.8 2.1E-18 7.2E-23 174.7 13.7 165 159-358 30-197 (423)
23 3tw8_B RAS-related protein RAB 99.8 4E-18 1.4E-22 152.5 13.6 157 162-357 8-171 (181)
24 3i8s_A Ferrous iron transport 99.8 1.1E-18 3.9E-23 167.8 10.5 163 163-356 3-168 (274)
25 4dcu_A GTP-binding protein ENG 99.8 5.3E-18 1.8E-22 175.0 16.0 169 161-358 193-370 (456)
26 2wji_A Ferrous iron transport 99.8 3.4E-18 1.2E-22 151.4 12.3 156 163-355 3-163 (165)
27 1x3s_A RAS-related protein RAB 99.8 1.9E-18 6.3E-23 156.9 10.9 172 163-386 15-194 (195)
28 3cph_A RAS-related protein SEC 99.8 5.2E-18 1.8E-22 156.4 13.8 157 162-357 19-182 (213)
29 2qu8_A Putative nucleolar GTP- 99.8 7.9E-18 2.7E-22 157.4 15.1 168 161-358 27-206 (228)
30 3tkl_A RAS-related protein RAB 99.8 8.3E-18 2.8E-22 152.8 14.0 158 162-358 15-180 (196)
31 3a1s_A Iron(II) transport prot 99.7 1.2E-17 4E-22 159.1 13.7 157 163-356 5-166 (258)
32 2xtp_A GTPase IMAP family memb 99.7 8.5E-18 2.9E-22 160.4 12.2 169 161-357 20-208 (260)
33 1upt_A ARL1, ADP-ribosylation 99.7 1.1E-17 3.9E-22 148.3 11.7 152 163-356 7-168 (171)
34 2h57_A ADP-ribosylation factor 99.7 6.1E-18 2.1E-22 153.2 10.0 156 162-357 20-187 (190)
35 3geh_A MNME, tRNA modification 99.7 9.9E-19 3.4E-23 179.4 5.1 161 163-357 224-384 (462)
36 2g6b_A RAS-related protein RAB 99.7 1.5E-17 5.3E-22 148.8 12.2 158 162-357 9-174 (180)
37 2h17_A ADP-ribosylation factor 99.7 2E-17 6.8E-22 148.7 12.6 151 161-353 19-179 (181)
38 1zj6_A ADP-ribosylation factor 99.7 3.2E-17 1.1E-21 148.1 13.8 154 162-357 15-178 (187)
39 3q72_A GTP-binding protein RAD 99.7 9.6E-18 3.3E-22 148.0 10.2 153 163-356 2-163 (166)
40 1ega_A Protein (GTP-binding pr 99.7 1.5E-17 5.1E-22 162.0 12.4 162 163-357 8-175 (301)
41 1r8s_A ADP-ribosylation factor 99.7 1.6E-17 5.5E-22 146.3 11.3 149 164-356 1-161 (164)
42 1ksh_A ARF-like protein 2; sma 99.7 2.3E-17 7.9E-22 148.7 12.5 155 161-357 16-180 (186)
43 1z0j_A RAB-22, RAS-related pro 99.7 1.4E-17 4.8E-22 147.4 10.8 154 163-356 6-168 (170)
44 3gj0_A GTP-binding nuclear pro 99.7 1.3E-17 4.4E-22 155.0 10.9 159 161-357 13-175 (221)
45 2qtf_A Protein HFLX, GTP-bindi 99.7 2.2E-17 7.5E-22 164.6 13.2 166 161-357 177-354 (364)
46 1z2a_A RAS-related protein RAB 99.7 2.9E-17 1E-21 145.0 12.4 154 163-355 5-165 (168)
47 3reg_A RHO-like small GTPase; 99.7 2.3E-17 7.8E-22 150.0 11.8 156 162-357 22-188 (194)
48 3k53_A Ferrous iron transport 99.7 2.3E-17 7.8E-22 158.5 12.4 158 163-357 3-166 (271)
49 2q3h_A RAS homolog gene family 99.7 2.2E-17 7.6E-22 150.8 11.6 157 161-357 18-195 (201)
50 1f6b_A SAR1; gtpases, N-termin 99.7 1.1E-17 3.8E-22 152.9 9.5 151 163-355 25-197 (198)
51 4bas_A ADP-ribosylation factor 99.7 1.7E-17 6E-22 151.0 10.8 159 160-358 14-190 (199)
52 2y8e_A RAB-protein 6, GH09086P 99.7 2.9E-17 1E-21 146.6 12.1 155 163-356 14-176 (179)
53 2wjg_A FEOB, ferrous iron tran 99.7 4.4E-17 1.5E-21 147.1 13.3 159 163-358 7-170 (188)
54 1lnz_A SPO0B-associated GTP-bi 99.7 3E-17 1E-21 162.0 13.2 164 163-358 158-331 (342)
55 1fzq_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 148.1 11.7 153 162-356 15-177 (181)
56 1r2q_A RAS-related protein RAB 99.7 1.3E-17 4.4E-22 147.5 9.3 154 163-356 6-168 (170)
57 3b1v_A Ferrous iron uptake tra 99.7 1.4E-17 4.9E-22 159.5 10.3 156 163-356 3-163 (272)
58 1moz_A ARL1, ADP-ribosylation 99.7 2.7E-17 9.2E-22 147.7 11.5 152 162-357 17-180 (183)
59 2b6h_A ADP-ribosylation factor 99.7 4E-17 1.4E-21 148.4 12.7 152 161-356 27-190 (192)
60 2il1_A RAB12; G-protein, GDP, 99.7 3.7E-17 1.3E-21 148.5 12.3 156 162-356 25-189 (192)
61 3q85_A GTP-binding protein REM 99.7 4.1E-17 1.4E-21 144.4 12.2 156 163-356 2-166 (169)
62 2nzj_A GTP-binding protein REM 99.7 2.4E-17 8.2E-22 146.7 10.7 157 163-357 4-169 (175)
63 1u8z_A RAS-related protein RAL 99.7 4.5E-17 1.5E-21 143.6 12.2 154 163-356 4-166 (168)
64 1m2o_B GTP-binding protein SAR 99.7 3.9E-17 1.3E-21 148.2 12.0 150 163-354 23-189 (190)
65 1g16_A RAS-related protein SEC 99.7 4.4E-17 1.5E-21 144.1 12.0 156 163-357 3-165 (170)
66 2x77_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 148.8 10.7 154 162-357 21-184 (189)
67 2fg5_A RAB-22B, RAS-related pr 99.7 2.5E-17 8.6E-22 149.5 10.3 158 162-357 22-186 (192)
68 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.3E-17 7.9E-22 148.4 9.7 155 163-357 5-180 (186)
69 1c1y_A RAS-related protein RAP 99.7 4.4E-17 1.5E-21 143.7 11.3 153 163-355 3-165 (167)
70 2atx_A Small GTP binding prote 99.7 3.5E-17 1.2E-21 148.6 10.9 154 162-355 17-191 (194)
71 4gzl_A RAS-related C3 botulinu 99.7 2.3E-17 7.9E-22 151.4 9.7 154 161-354 28-202 (204)
72 2j0v_A RAC-like GTP-binding pr 99.7 1.9E-17 6.6E-22 152.7 9.2 158 162-359 8-182 (212)
73 3clv_A RAB5 protein, putative; 99.7 6.8E-17 2.3E-21 147.4 12.8 155 162-356 6-203 (208)
74 2fn4_A P23, RAS-related protei 99.7 5E-17 1.7E-21 145.4 11.3 157 162-358 8-173 (181)
75 1zd9_A ADP-ribosylation factor 99.7 5.6E-17 1.9E-21 146.7 11.7 154 162-356 21-184 (188)
76 1ek0_A Protein (GTP-binding pr 99.7 4.3E-17 1.5E-21 144.1 10.7 154 163-355 3-167 (170)
77 4dsu_A GTPase KRAS, isoform 2B 99.7 6.8E-17 2.3E-21 145.6 12.2 156 163-358 4-167 (189)
78 4dkx_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 151.0 10.9 156 163-357 13-176 (216)
79 2gf9_A RAS-related protein RAB 99.7 4.1E-17 1.4E-21 147.7 10.5 156 162-357 21-185 (189)
80 2efe_B Small GTP-binding prote 99.7 6.8E-17 2.3E-21 144.7 11.8 156 163-357 12-175 (181)
81 1z0f_A RAB14, member RAS oncog 99.7 7.3E-17 2.5E-21 144.0 11.9 154 163-356 15-177 (179)
82 2a9k_A RAS-related protein RAL 99.7 7.5E-17 2.5E-21 145.0 12.0 156 162-357 17-181 (187)
83 3kkq_A RAS-related protein M-R 99.7 8.1E-17 2.8E-21 144.6 12.1 156 161-356 16-181 (183)
84 2a5j_A RAS-related protein RAB 99.7 9.2E-17 3.1E-21 145.6 12.5 157 162-357 20-184 (191)
85 2bov_A RAla, RAS-related prote 99.7 1E-16 3.5E-21 146.7 13.0 157 161-357 12-177 (206)
86 3bc1_A RAS-related protein RAB 99.7 1E-16 3.4E-21 145.1 12.7 157 162-357 10-185 (195)
87 2bcg_Y Protein YP2, GTP-bindin 99.7 9.4E-17 3.2E-21 147.3 12.6 157 163-358 8-172 (206)
88 2o52_A RAS-related protein RAB 99.7 7E-17 2.4E-21 147.7 11.6 156 163-357 25-188 (200)
89 1kao_A RAP2A; GTP-binding prot 99.7 6.5E-17 2.2E-21 142.4 10.8 154 163-356 3-165 (167)
90 1vg8_A RAS-related protein RAB 99.7 8.1E-17 2.8E-21 147.6 11.9 157 162-357 7-175 (207)
91 2j1l_A RHO-related GTP-binding 99.7 5.5E-17 1.9E-21 150.1 10.8 155 163-357 34-209 (214)
92 2hxs_A RAB-26, RAS-related pro 99.7 4.2E-17 1.4E-21 145.6 9.5 157 162-357 5-173 (178)
93 1z08_A RAS-related protein RAB 99.7 4.6E-17 1.6E-21 144.2 9.5 155 163-356 6-168 (170)
94 2e87_A Hypothetical protein PH 99.7 4E-16 1.4E-20 155.8 17.3 167 161-357 165-336 (357)
95 2fu5_C RAS-related protein RAB 99.7 2.5E-17 8.5E-22 148.0 7.6 156 163-357 8-171 (183)
96 2hup_A RAS-related protein RAB 99.7 1.1E-16 3.8E-21 146.5 12.0 157 162-357 28-193 (201)
97 3lxw_A GTPase IMAP family memb 99.7 4.3E-17 1.5E-21 154.3 9.4 171 162-359 20-210 (247)
98 4djt_A GTP-binding nuclear pro 99.7 1.1E-16 3.7E-21 148.3 11.8 157 162-358 10-176 (218)
99 3q3j_B RHO-related GTP-binding 99.7 5.3E-17 1.8E-21 150.2 9.5 157 161-357 25-203 (214)
100 3con_A GTPase NRAS; structural 99.7 1.4E-16 4.9E-21 144.0 12.1 156 163-358 21-184 (190)
101 2bme_A RAB4A, RAS-related prot 99.7 1.2E-16 4E-21 143.9 11.5 156 163-357 10-173 (186)
102 1zbd_A Rabphilin-3A; G protein 99.7 1.1E-16 3.9E-21 146.3 11.5 155 163-357 8-171 (203)
103 2p5s_A RAS and EF-hand domain 99.7 6.2E-17 2.1E-21 147.8 9.7 156 161-356 26-196 (199)
104 2oil_A CATX-8, RAS-related pro 99.7 9.8E-17 3.3E-21 145.6 10.9 155 163-356 25-187 (193)
105 1wms_A RAB-9, RAB9, RAS-relate 99.7 1.1E-16 3.7E-21 142.8 11.0 155 163-356 7-173 (177)
106 3mca_A HBS1, elongation factor 99.7 5.1E-18 1.7E-22 179.6 2.6 157 160-356 174-396 (592)
107 2gco_A H9, RHO-related GTP-bin 99.7 8.5E-17 2.9E-21 147.2 10.5 153 163-355 25-198 (201)
108 3cbq_A GTP-binding protein REM 99.7 1.5E-16 5E-21 145.0 11.9 159 161-357 21-188 (195)
109 3bwd_D RAC-like GTP-binding pr 99.7 2.2E-17 7.6E-22 148.0 6.3 154 162-355 7-179 (182)
110 3llu_A RAS-related GTP-binding 99.7 2E-16 6.8E-21 144.1 12.7 161 159-355 16-195 (196)
111 3dz8_A RAS-related protein RAB 99.7 5.3E-17 1.8E-21 147.2 8.8 158 162-357 22-186 (191)
112 1z06_A RAS-related protein RAB 99.7 1.3E-16 4.5E-21 144.2 10.9 156 162-355 19-186 (189)
113 3oes_A GTPase rhebl1; small GT 99.7 5.6E-17 1.9E-21 148.3 8.4 160 160-359 21-189 (201)
114 2ew1_A RAS-related protein RAB 99.7 1.8E-16 6E-21 145.3 11.7 156 163-357 26-189 (201)
115 1u0l_A Probable GTPase ENGC; p 99.7 2E-16 7E-21 154.0 12.7 144 268-435 80-236 (301)
116 3t5d_A Septin-7; GTP-binding p 99.7 3.5E-16 1.2E-20 150.4 14.2 166 163-355 8-202 (274)
117 2erx_A GTP-binding protein DI- 99.7 1.1E-16 3.7E-21 141.8 9.8 154 163-356 3-166 (172)
118 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.9E-21 147.0 10.2 154 163-356 25-199 (207)
119 1ky3_A GTP-binding protein YPT 99.7 8.9E-17 3E-21 143.8 9.3 156 162-356 7-177 (182)
120 2ce2_X GTPase HRAS; signaling 99.7 6.2E-16 2.1E-20 135.8 14.2 154 163-356 3-164 (166)
121 3izq_1 HBS1P, elongation facto 99.7 1.1E-16 3.8E-21 169.9 11.1 148 161-347 165-362 (611)
122 3t1o_A Gliding protein MGLA; G 99.7 5.8E-17 2E-21 147.1 7.7 158 162-357 13-192 (198)
123 3j2k_7 ERF3, eukaryotic polype 99.7 6E-16 2E-20 158.5 15.8 150 160-349 14-217 (439)
124 3cpj_B GTP-binding protein YPT 99.7 1.8E-16 6.2E-21 147.5 10.6 157 163-358 13-177 (223)
125 2f7s_A C25KG, RAS-related prot 99.7 2.4E-16 8.2E-21 145.8 11.4 155 162-357 24-199 (217)
126 3l0i_B RAS-related protein RAB 99.7 1.4E-17 4.8E-22 152.1 2.6 156 162-356 32-195 (199)
127 3izy_P Translation initiation 99.7 1.8E-17 6E-22 172.2 3.1 154 162-356 3-167 (537)
128 2iwr_A Centaurin gamma 1; ANK 99.7 4.3E-16 1.5E-20 139.2 11.6 150 162-357 6-169 (178)
129 1t9h_A YLOQ, probable GTPase E 99.7 1.2E-16 4E-21 154.8 8.1 143 269-435 83-239 (307)
130 2yv5_A YJEQ protein; hydrolase 99.7 2.8E-16 9.6E-21 153.0 10.9 142 269-435 76-231 (302)
131 3c5c_A RAS-like protein 12; GD 99.7 2.8E-16 9.7E-21 142.0 10.0 154 162-356 20-185 (187)
132 3o47_A ADP-ribosylation factor 99.7 8.1E-16 2.8E-20 151.7 14.1 153 162-356 164-326 (329)
133 4a9a_A Ribosome-interacting GT 99.7 5.6E-16 1.9E-20 153.9 13.0 126 157-315 66-194 (376)
134 2cxx_A Probable GTP-binding pr 99.7 1.8E-15 6.3E-20 136.4 15.3 164 164-358 2-185 (190)
135 2fh5_B SR-beta, signal recogni 99.7 8.9E-16 3.1E-20 141.6 13.4 151 162-354 6-213 (214)
136 3lxx_A GTPase IMAP family memb 99.6 5.7E-16 1.9E-20 145.8 12.1 170 160-358 26-215 (239)
137 2gf0_A GTP-binding protein DI- 99.6 3.7E-16 1.3E-20 142.2 10.5 156 162-357 7-171 (199)
138 2atv_A RERG, RAS-like estrogen 99.6 4.6E-16 1.6E-20 141.6 11.0 156 161-357 26-191 (196)
139 2yc2_C IFT27, small RAB-relate 99.6 1.5E-16 5.3E-21 145.7 7.5 157 163-357 20-192 (208)
140 1zo1_I IF2, translation initia 99.6 6.2E-17 2.1E-21 166.7 5.4 151 162-353 3-163 (501)
141 3ihw_A Centg3; RAS, centaurin, 99.6 1E-15 3.4E-20 138.1 12.7 152 160-357 17-180 (184)
142 3cb4_D GTP-binding protein LEP 99.6 5.3E-16 1.8E-20 163.5 12.0 186 163-394 4-216 (599)
143 3th5_A RAS-related C3 botulinu 99.4 1.5E-17 5.3E-22 152.4 0.0 154 161-354 28-202 (204)
144 1m7b_A RND3/RHOE small GTP-bin 99.6 3.8E-16 1.3E-20 140.6 9.2 154 162-355 6-181 (184)
145 1wb1_A Translation elongation 99.6 6E-16 2E-20 160.2 11.8 155 162-356 18-188 (482)
146 3r7w_A Gtpase1, GTP-binding pr 99.6 1E-15 3.4E-20 149.6 12.3 159 163-355 3-179 (307)
147 2g3y_A GTP-binding protein GEM 99.6 4.3E-16 1.5E-20 143.7 9.1 157 163-356 37-202 (211)
148 2cjw_A GTP-binding protein GEM 99.6 8.6E-16 2.9E-20 139.6 10.4 157 163-357 6-172 (192)
149 1gwn_A RHO-related GTP-binding 99.6 6.1E-16 2.1E-20 142.1 9.3 154 162-355 27-202 (205)
150 2zej_A Dardarin, leucine-rich 99.6 1E-15 3.5E-20 137.9 10.0 157 163-357 2-178 (184)
151 3tr5_A RF-3, peptide chain rel 99.6 3.6E-16 1.2E-20 163.0 8.0 115 163-317 13-148 (528)
152 3lvq_E ARF-GAP with SH3 domain 99.6 9.5E-16 3.2E-20 160.0 11.1 155 162-358 321-485 (497)
153 3sjy_A Translation initiation 99.6 1.8E-15 6.2E-20 153.5 11.3 158 161-357 6-192 (403)
154 2wkq_A NPH1-1, RAS-related C3 99.6 1.6E-15 5.3E-20 149.6 10.1 153 163-355 155-328 (332)
155 1kk1_A EIF2gamma; initiation o 99.6 5.5E-15 1.9E-19 150.3 13.3 156 163-357 10-200 (410)
156 2aka_B Dynamin-1; fusion prote 99.6 7.5E-15 2.6E-19 142.7 13.6 165 161-354 24-250 (299)
157 1zun_B Sulfate adenylate trans 99.6 9.4E-15 3.2E-19 149.6 14.2 145 163-347 24-214 (434)
158 1s0u_A EIF-2-gamma, translatio 99.6 7.7E-15 2.6E-19 149.1 13.5 157 162-357 7-198 (408)
159 3p26_A Elongation factor 1 alp 99.6 6E-15 2.1E-19 153.1 12.2 147 162-347 32-228 (483)
160 1g7s_A Translation initiation 99.6 1.1E-14 3.6E-19 153.7 14.0 155 162-357 4-218 (594)
161 2ywe_A GTP-binding protein LEP 99.6 6.4E-15 2.2E-19 155.0 11.8 156 163-358 6-185 (600)
162 2f9l_A RAB11B, member RAS onco 99.6 1.4E-14 4.8E-19 132.1 12.6 156 163-357 5-168 (199)
163 2elf_A Protein translation elo 99.6 7.9E-15 2.7E-19 146.5 11.8 142 165-357 23-180 (370)
164 2c78_A Elongation factor TU-A; 99.6 4.4E-15 1.5E-19 150.7 8.7 155 162-356 10-211 (405)
165 2rcn_A Probable GTPase ENGC; Y 99.5 7E-15 2.4E-19 144.9 8.8 143 270-436 128-284 (358)
166 1jwy_B Dynamin A GTPase domain 99.5 1.7E-14 5.9E-19 141.3 11.7 170 161-357 22-262 (315)
167 1d2e_A Elongation factor TU (E 99.5 9.9E-15 3.4E-19 147.7 10.2 154 163-356 3-194 (397)
168 1wxq_A GTP-binding protein; st 99.5 1.2E-15 4.2E-20 153.6 2.9 90 164-285 1-114 (397)
169 3def_A T7I23.11 protein; chlor 99.5 4.5E-14 1.5E-18 134.7 13.2 124 163-317 36-165 (262)
170 1h65_A Chloroplast outer envel 99.5 5.7E-14 1.9E-18 134.6 13.5 126 163-319 39-170 (270)
171 3dpu_A RAB family protein; roc 99.5 2.2E-14 7.7E-19 150.8 11.3 157 162-358 40-209 (535)
172 1wf3_A GTP-binding protein; GT 99.5 3.4E-14 1.2E-18 138.1 10.9 104 372-482 8-111 (301)
173 1jny_A EF-1-alpha, elongation 99.5 2.7E-14 9.2E-19 146.2 8.9 147 162-348 5-204 (435)
174 2j69_A Bacterial dynamin-like 99.5 1.4E-14 4.7E-19 156.3 6.9 158 162-356 68-324 (695)
175 1pui_A ENGB, probable GTP-bind 99.5 1.6E-13 5.5E-18 125.9 12.5 168 159-356 22-198 (210)
176 1f60_A Elongation factor EEF1A 99.5 1.5E-14 5.1E-19 148.9 6.0 145 163-347 7-202 (458)
177 1oix_A RAS-related protein RAB 99.5 2E-13 6.7E-18 123.7 12.6 154 163-355 29-190 (191)
178 1r5b_A Eukaryotic peptide chai 99.5 1.8E-14 6E-19 148.7 6.2 147 162-348 42-243 (467)
179 2h5e_A Peptide chain release f 99.5 1.1E-13 3.9E-18 144.3 12.2 115 163-317 13-148 (529)
180 2xex_A Elongation factor G; GT 99.5 1.1E-13 3.6E-18 149.3 11.7 117 161-317 8-141 (693)
181 3vqt_A RF-3, peptide chain rel 99.5 1.2E-13 4.2E-18 144.6 11.7 114 163-316 31-165 (548)
182 3lxw_A GTPase IMAP family memb 99.5 8.7E-14 3E-18 131.5 9.3 108 371-482 21-129 (247)
183 3avx_A Elongation factor TS, e 99.5 9.9E-14 3.4E-18 152.7 10.6 155 162-356 295-485 (1289)
184 1dar_A EF-G, elongation factor 99.5 1.5E-13 5.1E-18 148.1 11.9 115 163-317 12-143 (691)
185 1udx_A The GTP-binding protein 99.5 4.2E-13 1.4E-17 135.4 14.3 163 163-358 157-326 (416)
186 3iev_A GTP-binding protein ERA 99.5 2E-13 6.9E-18 133.3 11.5 107 372-482 11-118 (308)
187 3c5h_A Glucocorticoid receptor 99.5 3.9E-14 1.3E-18 134.6 6.1 84 272-355 162-253 (255)
188 2www_A Methylmalonic aciduria 99.5 3.9E-14 1.4E-18 140.6 6.0 149 161-356 72-278 (349)
189 1nrj_B SR-beta, signal recogni 99.5 1.4E-13 4.7E-18 127.2 9.2 142 161-343 10-170 (218)
190 2rdo_7 EF-G, elongation factor 99.4 4.8E-13 1.6E-17 144.3 14.4 116 162-317 9-148 (704)
191 3r7w_B Gtpase2, GTP-binding pr 99.4 1.6E-13 5.3E-18 133.2 9.5 154 165-355 1-172 (331)
192 2x2e_A Dynamin-1; nitration, h 99.4 2.7E-13 9.2E-18 135.0 11.3 163 162-353 30-254 (353)
193 2qag_A Septin-2, protein NEDD5 99.4 4.3E-13 1.5E-17 133.7 11.2 166 163-356 37-232 (361)
194 3zvr_A Dynamin-1; hydrolase, D 99.4 1.1E-12 3.7E-17 140.6 15.0 162 162-353 50-274 (772)
195 2dy1_A Elongation factor G; tr 99.4 7.9E-13 2.7E-17 142.0 12.2 115 162-316 8-139 (665)
196 2gj8_A MNME, tRNA modification 99.4 7.9E-13 2.7E-17 117.6 10.0 99 371-476 4-102 (172)
197 2xtp_A GTPase IMAP family memb 99.4 7E-13 2.4E-17 126.2 9.9 106 371-481 22-128 (260)
198 3j25_A Tetracycline resistance 99.4 2.1E-13 7.1E-18 145.8 6.8 114 163-316 2-132 (638)
199 1xzp_A Probable tRNA modificat 99.4 1.2E-13 4.2E-18 142.2 4.9 105 370-481 242-347 (482)
200 3lxx_A GTPase IMAP family memb 99.4 5.6E-13 1.9E-17 125.2 8.8 107 371-482 29-136 (239)
201 3t34_A Dynamin-related protein 99.4 1.2E-12 4.1E-17 130.7 11.2 163 162-351 33-255 (360)
202 3geh_A MNME, tRNA modification 99.4 1.3E-13 4.4E-18 141.4 4.0 107 369-482 222-328 (462)
203 3p32_A Probable GTPase RV1496/ 99.4 2.6E-13 9E-18 135.1 5.8 149 162-357 78-284 (355)
204 3gee_A MNME, tRNA modification 99.4 1.8E-13 6.2E-18 140.8 4.4 104 370-480 232-339 (476)
205 4dhe_A Probable GTP-binding pr 99.4 7.8E-13 2.7E-17 122.5 7.9 110 370-482 28-140 (223)
206 2ged_A SR-beta, signal recogni 99.4 2.7E-12 9.2E-17 116.0 10.7 117 161-318 46-171 (193)
207 4a9a_A Ribosome-interacting GT 99.3 6.5E-13 2.2E-17 131.9 6.6 93 372-473 73-165 (376)
208 2e87_A Hypothetical protein PH 99.3 8.3E-13 2.8E-17 131.7 5.0 184 279-469 64-258 (357)
209 2p67_A LAO/AO transport system 99.3 2.9E-12 1E-16 126.8 8.0 148 162-356 55-260 (341)
210 1jal_A YCHF protein; nucleotid 99.3 5.3E-12 1.8E-16 124.7 9.2 90 163-284 2-108 (363)
211 1ega_A Protein (GTP-binding pr 99.3 1.1E-12 3.8E-17 127.5 3.9 104 371-482 8-112 (301)
212 2qnr_A Septin-2, protein NEDD5 99.3 3.2E-11 1.1E-15 117.1 13.1 171 163-356 18-213 (301)
213 2qpt_A EH domain-containing pr 99.3 1.4E-11 4.9E-16 129.2 11.2 131 160-319 62-234 (550)
214 2dyk_A GTP-binding protein; GT 99.3 1.2E-11 4.2E-16 107.8 8.9 102 372-481 2-103 (161)
215 3iby_A Ferrous iron transport 99.3 1.5E-11 5.1E-16 116.6 9.8 94 372-469 2-95 (256)
216 4fn5_A EF-G 1, elongation fact 99.2 2.1E-11 7.1E-16 132.1 12.1 115 162-316 12-150 (709)
217 1h65_A Chloroplast outer envel 99.2 1.3E-11 4.5E-16 118.1 9.1 103 371-481 39-144 (270)
218 3i8s_A Ferrous iron transport 99.2 2.3E-11 7.9E-16 116.6 10.6 94 372-469 4-97 (274)
219 3def_A T7I23.11 protein; chlor 99.2 1.9E-11 6.5E-16 116.4 9.5 104 371-482 36-142 (262)
220 2dby_A GTP-binding protein; GD 99.2 1.9E-11 6.6E-16 121.4 9.7 89 164-284 2-111 (368)
221 1n0u_A EF-2, elongation factor 99.2 9.4E-12 3.2E-16 136.8 7.7 114 163-316 19-163 (842)
222 2wsm_A Hydrogenase expression/ 99.2 3.1E-12 1E-16 118.4 3.1 79 273-357 130-214 (221)
223 1svi_A GTP-binding protein YSX 99.2 4.8E-11 1.6E-15 107.7 10.1 106 370-482 22-130 (195)
224 2qag_C Septin-7; cell cycle, c 99.2 7.8E-11 2.7E-15 118.9 11.9 173 162-355 30-225 (418)
225 3pqc_A Probable GTP-binding pr 99.2 4.6E-11 1.6E-15 107.7 9.1 107 371-482 23-129 (195)
226 1yrb_A ATP(GTP)binding protein 99.2 9.3E-11 3.2E-15 111.4 10.4 161 162-357 13-257 (262)
227 2qm8_A GTPase/ATPase; G protei 99.1 3.4E-11 1.2E-15 118.7 7.0 148 162-356 54-260 (337)
228 3t5d_A Septin-7; GTP-binding p 99.1 1.1E-10 3.9E-15 111.8 10.3 111 372-483 9-142 (274)
229 3k53_A Ferrous iron transport 99.1 9.2E-11 3.1E-15 112.2 9.1 90 372-469 4-93 (271)
230 1jwy_B Dynamin A GTPase domain 99.1 1.9E-10 6.7E-15 112.3 10.8 111 370-481 23-193 (315)
231 3qq5_A Small GTP-binding prote 99.1 4.6E-11 1.6E-15 120.9 6.5 102 371-481 34-135 (423)
232 3b1v_A Ferrous iron uptake tra 99.1 1.7E-10 5.9E-15 110.2 9.7 89 372-469 4-92 (272)
233 2aka_B Dynamin-1; fusion prote 99.1 3.9E-10 1.3E-14 109.2 12.3 111 370-481 25-187 (299)
234 3a1s_A Iron(II) transport prot 99.1 2.5E-10 8.4E-15 108.4 10.5 90 372-469 6-95 (258)
235 1jal_A YCHF protein; nucleotid 99.1 1.3E-10 4.4E-15 114.7 7.5 90 372-469 3-108 (363)
236 2wji_A Ferrous iron transport 99.1 4E-10 1.4E-14 99.1 9.7 90 372-469 4-93 (165)
237 3ec1_A YQEH GTPase; atnos1, at 99.1 3.7E-11 1.3E-15 120.0 3.0 149 164-348 163-322 (369)
238 2x2e_A Dynamin-1; nitration, h 99.1 7.2E-10 2.5E-14 110.1 12.3 111 370-481 30-192 (353)
239 2qu8_A Putative nucleolar GTP- 99.1 4.9E-10 1.7E-14 104.1 10.4 95 371-472 29-123 (228)
240 2qtf_A Protein HFLX, GTP-bindi 99.0 4.7E-10 1.6E-14 111.6 10.2 91 373-471 181-271 (364)
241 2ohf_A Protein OLA1, GTP-bindi 99.0 2.5E-10 8.4E-15 113.8 6.9 93 369-469 20-128 (396)
242 3zvr_A Dynamin-1; hydrolase, D 99.0 1.6E-09 5.4E-14 116.2 12.5 144 336-482 18-213 (772)
243 2ohf_A Protein OLA1, GTP-bindi 99.0 5.9E-10 2E-14 111.1 7.5 91 162-284 21-128 (396)
244 3h2y_A GTPase family protein; 99.0 6.2E-11 2.1E-15 118.3 0.2 150 164-348 161-321 (368)
245 1f5n_A Interferon-induced guan 99.0 1.1E-09 3.7E-14 114.8 9.6 101 371-481 38-144 (592)
246 2wjg_A FEOB, ferrous iron tran 99.0 1.7E-09 5.8E-14 96.9 9.7 91 371-469 7-97 (188)
247 2lkc_A Translation initiation 99.0 1.2E-09 4.1E-14 96.8 8.4 96 370-481 7-102 (178)
248 2hf9_A Probable hydrogenase ni 99.0 4.2E-10 1.5E-14 104.2 5.4 54 303-356 164-223 (226)
249 2j69_A Bacterial dynamin-like 99.0 6E-10 2.1E-14 120.1 7.3 99 370-479 68-222 (695)
250 1wxq_A GTP-binding protein; st 98.9 2.9E-10 9.9E-15 114.4 4.2 90 373-470 2-114 (397)
251 2cxx_A Probable GTP-binding pr 98.9 1.3E-09 4.3E-14 97.7 7.7 91 372-468 2-93 (190)
252 3t34_A Dynamin-related protein 98.9 3.8E-09 1.3E-13 105.2 11.8 110 371-481 34-198 (360)
253 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 7E-10 2.4E-14 110.8 6.2 94 369-469 18-127 (392)
254 1pui_A ENGB, probable GTP-bind 98.9 1.9E-09 6.5E-14 98.5 8.6 104 369-479 24-130 (210)
255 3r7w_A Gtpase1, GTP-binding pr 98.9 1E-09 3.5E-14 106.9 7.2 95 372-475 4-98 (307)
256 2qpt_A EH domain-containing pr 98.9 2.3E-09 8E-14 112.3 9.1 109 370-482 64-214 (550)
257 1lnz_A SPO0B-associated GTP-bi 98.9 1.3E-09 4.3E-14 107.4 6.3 91 371-469 158-248 (342)
258 2dby_A GTP-binding protein; GD 98.9 1.4E-09 4.7E-14 108.0 6.6 90 372-469 2-111 (368)
259 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.2E-09 1.1E-13 106.1 9.3 91 163-284 20-127 (392)
260 1upt_A ARL1, ADP-ribosylation 98.9 2.5E-09 8.5E-14 93.9 6.8 90 371-479 7-98 (171)
261 2qag_B Septin-6, protein NEDD5 98.9 1.2E-08 4.2E-13 102.5 12.6 153 163-338 42-217 (427)
262 1cip_A Protein (guanine nucleo 98.9 3.1E-09 1.1E-13 105.0 7.5 117 202-356 184-343 (353)
263 2ged_A SR-beta, signal recogni 98.8 3.5E-09 1.2E-13 95.3 7.2 105 341-468 23-129 (193)
264 1fzq_A ADP-ribosylation factor 98.8 5.2E-09 1.8E-13 93.4 8.3 81 371-470 16-96 (181)
265 1zj6_A ADP-ribosylation factor 98.8 5.7E-09 1.9E-13 93.5 8.5 89 371-478 16-106 (187)
266 1r8s_A ADP-ribosylation factor 98.8 7.8E-09 2.7E-13 90.1 9.0 87 373-478 2-90 (164)
267 3j2k_7 ERF3, eukaryotic polype 98.8 5.1E-09 1.8E-13 107.0 8.6 88 370-472 16-133 (439)
268 2h17_A ADP-ribosylation factor 98.8 4E-09 1.4E-13 94.0 6.9 90 370-478 20-111 (181)
269 2j37_W Signal recognition part 98.8 8E-09 2.7E-13 106.5 9.7 156 162-354 100-310 (504)
270 2fh5_B SR-beta, signal recogni 98.8 1.1E-08 3.9E-13 93.6 9.7 82 371-469 7-90 (214)
271 3llu_A RAS-related GTP-binding 98.8 1.1E-08 3.7E-13 92.5 9.3 99 370-479 19-117 (196)
272 4bas_A ADP-ribosylation factor 98.8 6.6E-09 2.3E-13 93.8 7.7 90 371-479 17-110 (199)
273 1ksh_A ARF-like protein 2; sma 98.8 5E-09 1.7E-13 93.6 6.8 81 371-470 18-98 (186)
274 1z0j_A RAB-22, RAS-related pro 98.8 5.4E-09 1.8E-13 91.6 6.7 86 372-472 7-93 (170)
275 3izq_1 HBS1P, elongation facto 98.8 6E-09 2E-13 110.5 7.4 85 371-470 167-281 (611)
276 3p26_A Elongation factor 1 alp 98.8 9E-09 3.1E-13 106.6 8.4 85 371-470 33-147 (483)
277 1nrj_B SR-beta, signal recogni 98.8 1.9E-08 6.6E-13 92.3 9.7 93 370-480 11-108 (218)
278 2x77_A ADP-ribosylation factor 98.8 1.2E-08 4.2E-13 91.4 8.1 89 371-478 22-112 (189)
279 2h57_A ADP-ribosylation factor 98.8 1.1E-08 3.9E-13 91.7 7.8 91 371-478 21-113 (190)
280 3izy_P Translation initiation 98.8 2.7E-09 9.4E-14 110.8 4.1 97 370-481 3-99 (537)
281 2g6b_A RAS-related protein RAB 98.8 9.1E-09 3.1E-13 91.2 6.5 87 371-472 10-98 (180)
282 3sop_A Neuronal-specific septi 98.7 3.5E-08 1.2E-12 94.0 10.9 133 164-319 3-156 (270)
283 1moz_A ARL1, ADP-ribosylation 98.7 8.4E-09 2.9E-13 91.7 6.2 82 370-470 17-98 (183)
284 1r2q_A RAS-related protein RAB 98.7 1.6E-08 5.5E-13 88.4 7.9 84 372-470 7-91 (170)
285 2b6h_A ADP-ribosylation factor 98.7 1.6E-08 5.5E-13 91.1 8.0 81 371-470 29-109 (192)
286 2fg5_A RAB-22B, RAS-related pr 98.7 1.1E-08 3.9E-13 92.0 7.0 86 371-471 23-109 (192)
287 3q72_A GTP-binding protein RAD 98.7 9.8E-09 3.3E-13 89.7 6.2 83 372-470 3-85 (166)
288 3tw8_B RAS-related protein RAB 98.7 1.1E-08 3.8E-13 90.5 6.7 85 371-471 9-95 (181)
289 3clv_A RAB5 protein, putative; 98.7 2.4E-08 8.1E-13 90.2 9.0 87 371-473 7-132 (208)
290 1f6b_A SAR1; gtpases, N-termin 98.7 9.1E-09 3.1E-13 93.3 6.2 80 372-470 26-105 (198)
291 2nzj_A GTP-binding protein REM 98.7 8.3E-09 2.8E-13 90.9 5.7 84 372-470 5-90 (175)
292 1m2o_B GTP-binding protein SAR 98.7 1.2E-08 4.1E-13 91.8 6.9 81 371-470 23-103 (190)
293 3bc1_A RAS-related protein RAB 98.7 2.4E-08 8.2E-13 89.4 8.5 88 371-474 11-110 (195)
294 1tq4_A IIGP1, interferon-induc 98.7 6E-08 2E-12 97.5 12.1 156 163-359 69-255 (413)
295 3tr5_A RF-3, peptide chain rel 98.7 7E-09 2.4E-13 108.0 5.4 96 371-481 13-129 (528)
296 1ek0_A Protein (GTP-binding pr 98.7 1.8E-08 6E-13 88.2 7.2 85 372-471 4-89 (170)
297 2oil_A CATX-8, RAS-related pro 98.7 2.3E-08 7.9E-13 89.9 7.9 87 371-472 25-112 (193)
298 1u8z_A RAS-related protein RAL 98.7 2.6E-08 8.9E-13 86.8 8.0 82 372-470 5-88 (168)
299 2www_A Methylmalonic aciduria 98.7 9.9E-09 3.4E-13 101.6 5.8 84 370-470 73-200 (349)
300 3tkl_A RAS-related protein RAB 98.7 2.6E-08 8.9E-13 89.6 7.7 85 371-471 16-102 (196)
301 3t1o_A Gliding protein MGLA; G 98.7 2.1E-08 7.3E-13 90.1 7.1 93 371-477 14-117 (198)
302 2erx_A GTP-binding protein DI- 98.7 3.4E-08 1.2E-12 86.5 8.3 82 372-470 4-87 (172)
303 2p5s_A RAS and EF-hand domain 98.7 1.9E-08 6.6E-13 91.0 6.9 87 371-472 28-115 (199)
304 4djt_A GTP-binding nuclear pro 98.7 1.6E-08 5.6E-13 92.8 6.4 89 371-475 11-102 (218)
305 1wb1_A Translation elongation 98.7 2.3E-08 8E-13 103.2 8.0 94 371-479 19-118 (482)
306 2y8e_A RAB-protein 6, GH09086P 98.7 2.4E-08 8.4E-13 88.1 7.0 83 372-470 15-99 (179)
307 2c78_A Elongation factor TU-A; 98.7 1.6E-08 5.6E-13 102.2 6.5 94 371-479 11-120 (405)
308 3cph_A RAS-related protein SEC 98.7 2.2E-08 7.6E-13 91.4 6.7 85 371-471 20-106 (213)
309 2efe_B Small GTP-binding prote 98.7 2.5E-08 8.7E-13 88.3 6.9 87 371-472 12-99 (181)
310 1zd9_A ADP-ribosylation factor 98.7 3.7E-08 1.3E-12 88.3 8.0 81 371-470 22-103 (188)
311 2elf_A Protein translation elo 98.7 3.2E-08 1.1E-12 98.6 8.2 82 373-479 23-104 (370)
312 4dsu_A GTPase KRAS, isoform 2B 98.7 3.9E-08 1.3E-12 87.7 8.0 82 372-470 5-88 (189)
313 1x3s_A RAS-related protein RAB 98.7 2.9E-08 1E-12 89.1 7.1 86 371-471 15-101 (195)
314 1kao_A RAP2A; GTP-binding prot 98.7 4.1E-08 1.4E-12 85.4 7.7 82 372-470 4-87 (167)
315 1z2a_A RAS-related protein RAB 98.7 2.5E-08 8.7E-13 87.0 6.4 86 371-471 5-91 (168)
316 1g16_A RAS-related protein SEC 98.7 1.9E-08 6.3E-13 88.1 5.5 84 372-471 4-89 (170)
317 1z0f_A RAB14, member RAS oncog 98.7 4.3E-08 1.5E-12 86.5 7.7 87 371-472 15-102 (179)
318 3gj0_A GTP-binding nuclear pro 98.7 1.6E-08 5.6E-13 93.1 5.1 87 371-472 15-102 (221)
319 2a9k_A RAS-related protein RAL 98.7 5.2E-08 1.8E-12 86.6 8.3 83 371-470 18-102 (187)
320 2yc2_C IFT27, small RAB-relate 98.6 1.6E-08 5.3E-13 91.9 4.8 87 371-471 20-110 (208)
321 2bov_A RAla, RAS-related prote 98.6 5.2E-08 1.8E-12 88.3 8.3 83 371-470 14-98 (206)
322 2il1_A RAB12; G-protein, GDP, 98.6 3.9E-08 1.3E-12 88.5 7.3 87 371-474 26-115 (192)
323 2bme_A RAB4A, RAS-related prot 98.6 3.1E-08 1.1E-12 88.3 6.6 85 371-471 10-96 (186)
324 2fn4_A P23, RAS-related protei 98.6 4.6E-08 1.6E-12 86.5 7.6 83 371-470 9-93 (181)
325 1zbd_A Rabphilin-3A; G protein 98.6 4E-08 1.4E-12 89.0 7.4 84 372-470 9-93 (203)
326 1puj_A YLQF, conserved hypothe 98.6 7.7E-08 2.6E-12 92.2 9.6 61 162-225 119-179 (282)
327 1wms_A RAB-9, RAB9, RAS-relate 98.6 3.8E-08 1.3E-12 86.8 6.9 85 371-471 7-93 (177)
328 1c1y_A RAS-related protein RAP 98.6 5.6E-08 1.9E-12 84.7 7.8 82 372-470 4-87 (167)
329 1zun_B Sulfate adenylate trans 98.6 5.5E-08 1.9E-12 99.3 8.9 93 372-479 25-149 (434)
330 2h5e_A Peptide chain release f 98.6 5.5E-08 1.9E-12 101.4 9.0 96 371-481 13-129 (529)
331 1d2e_A Elongation factor TU (E 98.6 5.1E-08 1.7E-12 98.3 8.2 93 372-479 4-111 (397)
332 2hxs_A RAB-26, RAS-related pro 98.6 2.8E-08 9.6E-13 87.8 5.6 87 371-472 6-94 (178)
333 3ohm_A Guanine nucleotide-bind 98.6 5.2E-08 1.8E-12 94.9 7.8 119 200-356 156-317 (327)
334 2xex_A Elongation factor G; GT 98.6 3.6E-08 1.2E-12 106.3 7.3 96 371-481 10-122 (693)
335 2gf9_A RAS-related protein RAB 98.6 4.2E-08 1.5E-12 87.8 6.5 85 371-470 22-107 (189)
336 1zo1_I IF2, translation initia 98.6 3E-08 1E-12 102.1 5.8 94 370-479 3-96 (501)
337 1z06_A RAS-related protein RAB 98.6 6.2E-08 2.1E-12 86.8 7.2 85 371-470 20-106 (189)
338 1f60_A Elongation factor EEF1A 98.6 2.1E-08 7.2E-13 102.9 4.6 86 372-472 8-123 (458)
339 1z08_A RAS-related protein RAB 98.6 4.3E-08 1.5E-12 85.8 5.9 85 371-471 6-92 (170)
340 3q85_A GTP-binding protein REM 98.6 3.7E-08 1.3E-12 86.2 5.3 84 372-470 3-88 (169)
341 1ky3_A GTP-binding protein YPT 98.6 2.7E-08 9.2E-13 88.1 4.4 86 371-471 8-95 (182)
342 3kkq_A RAS-related protein M-R 98.6 7.7E-08 2.6E-12 85.5 7.4 83 371-470 18-102 (183)
343 3t5g_A GTP-binding protein RHE 98.6 7.5E-08 2.6E-12 85.4 7.3 82 371-469 6-89 (181)
344 1vg8_A RAS-related protein RAB 98.6 5.1E-08 1.7E-12 88.5 6.3 85 371-471 8-94 (207)
345 2bcg_Y Protein YP2, GTP-bindin 98.6 4.1E-08 1.4E-12 89.2 5.6 85 371-471 8-94 (206)
346 2q3h_A RAS homolog gene family 98.6 5.6E-08 1.9E-12 87.9 6.5 88 370-474 19-108 (201)
347 3oes_A GTPase rhebl1; small GT 98.6 5.2E-08 1.8E-12 88.3 6.2 84 371-470 24-108 (201)
348 2ew1_A RAS-related protein RAB 98.6 5.3E-08 1.8E-12 88.5 6.2 85 371-471 26-112 (201)
349 3mca_A HBS1, elongation factor 98.6 5.2E-09 1.8E-13 110.6 -0.7 84 371-469 177-290 (592)
350 3dz8_A RAS-related protein RAB 98.6 2.2E-08 7.4E-13 90.0 3.4 86 370-470 22-108 (191)
351 3lvq_E ARF-GAP with SH3 domain 98.6 6.5E-08 2.2E-12 100.6 7.5 89 371-478 322-412 (497)
352 2f7s_A C25KG, RAS-related prot 98.6 5.5E-08 1.9E-12 89.2 6.1 87 371-472 25-122 (217)
353 4gzl_A RAS-related C3 botulinu 98.6 7.4E-08 2.5E-12 87.6 6.9 88 371-475 30-119 (204)
354 2ce2_X GTPase HRAS; signaling 98.6 1.1E-07 3.6E-12 82.6 7.5 82 372-470 4-87 (166)
355 2atv_A RERG, RAS-like estrogen 98.6 7.9E-08 2.7E-12 86.7 6.8 83 371-470 28-111 (196)
356 2iw3_A Elongation factor 3A; a 98.6 2.1E-08 7.2E-13 110.2 3.5 68 245-314 536-606 (986)
357 2iwr_A Centaurin gamma 1; ANK 98.6 9.1E-08 3.1E-12 84.6 7.1 78 371-471 7-86 (178)
358 2gf0_A GTP-binding protein DI- 98.6 9.7E-08 3.3E-12 86.0 7.4 83 371-470 8-92 (199)
359 3con_A GTPase NRAS; structural 98.6 9.4E-08 3.2E-12 85.5 7.1 84 371-471 21-106 (190)
360 3reg_A RHO-like small GTPase; 98.5 6.9E-08 2.4E-12 86.8 6.1 85 371-472 23-109 (194)
361 2a5j_A RAS-related protein RAB 98.5 6.6E-08 2.3E-12 86.8 5.8 84 371-471 21-107 (191)
362 1kk1_A EIF2gamma; initiation o 98.5 1.3E-07 4.6E-12 95.7 8.5 93 371-477 10-127 (410)
363 2hup_A RAS-related protein RAB 98.5 1E-07 3.5E-12 86.5 6.6 84 371-470 29-114 (201)
364 3cbq_A GTP-binding protein REM 98.5 1.3E-07 4.6E-12 85.3 7.3 85 371-470 23-109 (195)
365 3sjy_A Translation initiation 98.5 1.4E-07 4.8E-12 95.3 8.1 93 370-476 7-118 (403)
366 3bwd_D RAC-like GTP-binding pr 98.5 7.9E-08 2.7E-12 85.2 5.5 84 371-471 8-93 (182)
367 1jny_A EF-1-alpha, elongation 98.5 6.5E-08 2.2E-12 98.7 5.6 85 371-470 6-120 (435)
368 2o52_A RAS-related protein RAB 98.5 6.4E-08 2.2E-12 87.7 4.8 85 371-471 25-111 (200)
369 3ozx_A RNAse L inhibitor; ATP 98.5 8E-08 2.7E-12 100.3 6.0 60 253-314 134-198 (538)
370 1udx_A The GTP-binding protein 98.5 1.2E-07 4.1E-12 95.6 7.0 94 367-468 153-246 (416)
371 2atx_A Small GTP binding prote 98.5 1.3E-07 4.5E-12 84.9 6.6 83 371-470 18-102 (194)
372 1mh1_A RAC1; GTP-binding, GTPa 98.5 1.1E-07 3.8E-12 84.4 6.1 84 371-471 5-90 (186)
373 3o47_A ADP-ribosylation factor 98.5 1.7E-07 5.6E-12 92.1 7.7 90 371-479 165-256 (329)
374 2qm8_A GTPase/ATPase; G protei 98.5 7.1E-08 2.4E-12 94.9 4.8 26 368-393 52-77 (337)
375 2fu5_C RAS-related protein RAB 98.5 2.7E-08 9.2E-13 88.5 1.6 84 371-470 8-93 (183)
376 2qag_A Septin-2, protein NEDD5 98.5 2.1E-07 7.3E-12 92.4 8.2 110 372-482 38-171 (361)
377 2fv8_A H6, RHO-related GTP-bin 98.5 9.3E-08 3.2E-12 87.1 5.1 82 372-470 26-109 (207)
378 2zej_A Dardarin, leucine-rich 98.5 1.3E-07 4.4E-12 84.4 5.9 85 372-470 3-92 (184)
379 2gco_A H9, RHO-related GTP-bin 98.5 1.1E-07 3.6E-12 86.2 5.4 82 372-470 26-109 (201)
380 1f5n_A Interferon-induced guan 98.5 1.2E-07 4E-12 99.4 6.0 62 162-225 37-105 (592)
381 2j0v_A RAC-like GTP-binding pr 98.5 2.2E-07 7.5E-12 84.8 7.2 83 371-470 9-93 (212)
382 3c5c_A RAS-like protein 12; GD 98.5 2.1E-07 7.3E-12 83.2 7.0 82 371-470 21-104 (187)
383 1m7b_A RND3/RHOE small GTP-bin 98.5 1.6E-07 5.5E-12 83.7 6.1 85 371-471 7-92 (184)
384 1dar_A EF-G, elongation factor 98.5 2E-07 7E-12 100.3 8.0 95 371-480 12-123 (691)
385 3sop_A Neuronal-specific septi 98.5 3.8E-07 1.3E-11 86.8 8.7 109 373-482 4-137 (270)
386 3l0i_B RAS-related protein RAB 98.4 2.4E-08 8.1E-13 90.4 0.3 85 371-471 33-119 (199)
387 3ihw_A Centg3; RAS, centaurin, 98.4 2.5E-07 8.5E-12 82.6 7.0 79 371-472 20-100 (184)
388 1s0u_A EIF-2-gamma, translatio 98.4 2.6E-07 8.9E-12 93.5 7.9 93 371-477 8-125 (408)
389 2p67_A LAO/AO transport system 98.4 2.4E-07 8.3E-12 91.3 7.3 84 369-469 54-181 (341)
390 4fid_A G protein alpha subunit 98.4 1.1E-07 3.8E-12 92.9 4.7 119 200-356 150-327 (340)
391 2j1l_A RHO-related GTP-binding 98.4 1.5E-07 5.1E-12 86.3 5.3 83 371-470 34-118 (214)
392 3q3j_B RHO-related GTP-binding 98.4 3.5E-07 1.2E-11 83.8 7.6 86 371-472 27-113 (214)
393 3cb4_D GTP-binding protein LEP 98.4 2.3E-07 7.9E-12 97.7 7.1 94 372-479 5-116 (599)
394 2ywe_A GTP-binding protein LEP 98.4 2.5E-07 8.5E-12 97.4 7.3 94 372-479 7-118 (600)
395 1r5b_A Eukaryotic peptide chai 98.4 1.6E-07 5.3E-12 96.7 5.6 85 372-471 44-158 (467)
396 1gwn_A RHO-related GTP-binding 98.4 3.1E-07 1.1E-11 83.6 7.1 85 371-471 28-113 (205)
397 3cpj_B GTP-binding protein YPT 98.4 1.9E-07 6.4E-12 86.1 5.5 86 371-472 13-100 (223)
398 2qag_B Septin-6, protein NEDD5 98.4 5.4E-07 1.8E-11 90.5 9.0 115 368-482 37-173 (427)
399 3avx_A Elongation factor TS, e 98.4 4.3E-07 1.5E-11 100.6 8.9 94 371-479 296-404 (1289)
400 1n0u_A EF-2, elongation factor 98.4 3E-07 1E-11 101.1 7.4 96 371-480 19-144 (842)
401 1g7s_A Translation initiation 98.4 4.2E-07 1.4E-11 95.8 8.1 96 371-481 5-117 (594)
402 3dm5_A SRP54, signal recogniti 98.4 2.8E-06 9.4E-11 85.8 13.6 147 163-347 100-281 (443)
403 2rdo_7 EF-G, elongation factor 98.4 6.6E-07 2.2E-11 96.5 9.6 96 370-480 9-128 (704)
404 2g3y_A GTP-binding protein GEM 98.4 3.2E-07 1.1E-11 84.0 5.6 84 372-469 38-123 (211)
405 3vqt_A RF-3, peptide chain rel 98.4 6.3E-07 2.2E-11 93.8 8.6 97 370-481 30-147 (548)
406 2cjw_A GTP-binding protein GEM 98.4 1.6E-07 5.6E-12 84.5 3.5 84 372-469 7-92 (192)
407 2v3c_C SRP54, signal recogniti 98.4 5.4E-07 1.8E-11 91.4 7.4 80 272-356 210-310 (432)
408 1yqt_A RNAse L inhibitor; ATP- 98.3 1.2E-07 4E-12 99.2 2.6 60 253-314 154-219 (538)
409 3cnl_A YLQF, putative uncharac 98.3 2.8E-07 9.7E-12 87.2 5.0 58 164-224 100-157 (262)
410 3j16_B RLI1P; ribosome recycli 98.3 6.8E-07 2.3E-11 94.4 8.3 25 163-187 103-127 (608)
411 2f9l_A RAB11B, member RAS onco 98.3 5.7E-07 2E-11 81.2 6.4 84 372-472 6-92 (199)
412 3th5_A RAS-related C3 botulinu 97.7 6.3E-08 2.1E-12 87.9 0.0 84 371-471 30-115 (204)
413 1oix_A RAS-related protein RAB 98.3 8.9E-07 3.1E-11 79.5 7.4 83 372-470 30-114 (191)
414 3bk7_A ABC transporter ATP-bin 98.3 2.7E-07 9.3E-12 97.6 4.5 61 252-314 223-289 (607)
415 3p32_A Probable GTPase RV1496/ 98.3 7.2E-07 2.5E-11 88.4 6.6 81 370-469 78-204 (355)
416 1zcb_A G alpha I/13; GTP-bindi 98.3 3E-07 1E-11 91.1 3.6 119 200-356 190-352 (362)
417 2dy1_A Elongation factor G; tr 98.3 1.3E-06 4.3E-11 93.8 8.7 97 370-481 8-121 (665)
418 2wkq_A NPH1-1, RAS-related C3 98.3 7.7E-07 2.6E-11 87.0 6.4 90 369-475 153-244 (332)
419 2j37_W Signal recognition part 98.3 3.1E-06 1.1E-10 87.1 11.0 93 371-471 101-227 (504)
420 3ux8_A Excinuclease ABC, A sub 98.2 8E-07 2.8E-11 95.7 6.4 29 364-392 341-369 (670)
421 3kl4_A SRP54, signal recogniti 98.2 4.3E-06 1.5E-10 84.4 10.8 70 272-347 211-280 (433)
422 3j25_A Tetracycline resistance 98.2 9.3E-07 3.2E-11 94.4 6.0 95 372-481 3-114 (638)
423 4dkx_A RAS-related protein RAB 98.2 3E-06 1E-10 77.8 8.0 83 372-470 14-98 (216)
424 3gfo_A Cobalt import ATP-bindi 98.2 4E-06 1.4E-10 79.8 9.0 140 163-317 34-208 (275)
425 3q5d_A Atlastin-1; G protein, 98.2 2.2E-06 7.7E-11 86.7 7.5 97 372-480 68-191 (447)
426 2qag_C Septin-7; cell cycle, c 98.1 4.8E-06 1.6E-10 83.9 8.6 25 372-396 32-56 (418)
427 3dpu_A RAB family protein; roc 98.1 3.5E-06 1.2E-10 88.3 6.6 84 371-469 41-133 (535)
428 3r7w_B Gtpase2, GTP-binding pr 98.1 1.1E-05 3.6E-10 78.2 9.2 88 373-473 1-88 (331)
429 2v3c_C SRP54, signal recogniti 98.0 8.7E-06 3E-10 82.5 7.7 92 372-471 100-224 (432)
430 3fvq_A Fe(3+) IONS import ATP- 98.0 4.6E-05 1.6E-09 74.9 12.6 136 163-314 30-200 (359)
431 1azs_C GS-alpha; complex (lyas 98.0 3.6E-06 1.2E-10 84.1 4.5 119 200-356 206-384 (402)
432 1yrb_A ATP(GTP)binding protein 98.0 4.2E-06 1.4E-10 78.9 4.7 35 370-404 13-52 (262)
433 3szr_A Interferon-induced GTP- 98.0 2.5E-05 8.4E-10 82.9 10.8 26 162-187 44-69 (608)
434 2qnr_A Septin-2, protein NEDD5 98.0 1.7E-05 5.9E-10 76.5 8.8 60 372-431 19-87 (301)
435 4fn5_A EF-G 1, elongation fact 98.0 1.6E-05 5.5E-10 85.9 9.2 97 371-481 13-132 (709)
436 3tui_C Methionine import ATP-b 97.9 5.6E-05 1.9E-09 74.4 11.8 136 163-314 54-225 (366)
437 3rlf_A Maltose/maltodextrin im 97.9 2.4E-05 8E-10 77.6 9.2 136 163-314 29-195 (381)
438 1j8m_F SRP54, signal recogniti 97.9 6.3E-05 2.2E-09 72.3 11.9 73 270-349 210-283 (297)
439 2xtz_A Guanine nucleotide-bind 97.9 5.8E-06 2E-10 81.5 4.7 109 210-356 182-344 (354)
440 1g29_1 MALK, maltose transport 97.9 9.8E-05 3.3E-09 73.2 12.6 135 163-313 29-200 (372)
441 2pcj_A ABC transporter, lipopr 97.9 8.7E-05 3E-09 68.3 11.3 25 163-187 30-54 (224)
442 1g6h_A High-affinity branched- 97.9 0.00013 4.6E-09 68.5 12.7 51 264-316 161-216 (257)
443 1v43_A Sugar-binding transport 97.9 6.1E-05 2.1E-09 74.6 10.7 135 163-313 37-202 (372)
444 2olj_A Amino acid ABC transpor 97.9 7.8E-05 2.7E-09 70.3 10.9 25 163-187 50-74 (263)
445 1tq4_A IIGP1, interferon-induc 97.8 4.3E-05 1.5E-09 76.7 9.3 99 370-481 68-170 (413)
446 1ji0_A ABC transporter; ATP bi 97.8 0.00011 3.6E-09 68.5 11.0 25 163-187 32-56 (240)
447 3nh6_A ATP-binding cassette SU 97.8 0.00011 3.8E-09 70.8 11.4 135 163-313 80-249 (306)
448 3dm5_A SRP54, signal recogniti 97.8 7.8E-05 2.7E-09 75.2 10.7 91 371-469 100-224 (443)
449 2yyz_A Sugar ABC transporter, 97.8 8.6E-05 2.9E-09 73.1 10.7 135 163-313 29-194 (359)
450 1z47_A CYSA, putative ABC-tran 97.8 8.7E-05 3E-09 72.9 10.7 134 163-312 41-205 (355)
451 3tif_A Uncharacterized ABC tra 97.8 0.00011 3.6E-09 68.2 10.4 25 163-187 31-55 (235)
452 3e70_C DPA, signal recognition 97.8 1.2E-05 4E-10 78.5 3.8 73 271-349 240-312 (328)
453 4g1u_C Hemin import ATP-bindin 97.8 6.8E-05 2.3E-09 70.9 8.8 25 163-187 37-61 (266)
454 2it1_A 362AA long hypothetical 97.7 9.5E-05 3.3E-09 72.9 9.9 135 163-313 29-194 (362)
455 1oxx_K GLCV, glucose, ABC tran 97.7 0.00011 3.7E-09 72.4 10.0 135 163-313 31-201 (353)
456 1vpl_A ABC transporter, ATP-bi 97.7 0.00018 6.3E-09 67.5 11.0 25 163-187 41-65 (256)
457 2ghi_A Transport protein; mult 97.7 0.00045 1.5E-08 65.0 13.3 24 163-186 46-69 (260)
458 2ff7_A Alpha-hemolysin translo 97.7 0.00034 1.2E-08 65.3 12.3 25 163-187 35-59 (247)
459 3c5h_A Glucocorticoid receptor 97.7 2.8E-05 9.5E-10 73.2 4.7 24 371-394 19-51 (255)
460 2yz2_A Putative ABC transporte 97.7 0.00017 5.8E-09 68.2 10.2 53 262-316 144-201 (266)
461 2yhs_A FTSY, cell division pro 97.6 0.00019 6.5E-09 73.1 10.7 29 366-394 288-316 (503)
462 1b0u_A Histidine permease; ABC 97.6 0.00022 7.6E-09 67.2 10.4 25 163-187 32-56 (262)
463 2ihy_A ABC transporter, ATP-bi 97.6 0.00018 6.2E-09 68.5 9.5 25 163-187 47-71 (279)
464 2onk_A Molybdate/tungstate ABC 97.6 0.00024 8.3E-09 66.0 9.8 24 164-187 25-48 (240)
465 2ixe_A Antigen peptide transpo 97.6 0.00035 1.2E-08 66.2 10.8 25 163-187 45-69 (271)
466 1rj9_A FTSY, signal recognitio 97.6 0.00042 1.5E-08 66.7 11.3 25 162-186 101-125 (304)
467 3szr_A Interferon-induced GTP- 97.5 0.00018 6.2E-09 76.2 8.7 24 372-395 46-69 (608)
468 3qf4_B Uncharacterized ABC tra 97.5 0.00047 1.6E-08 73.0 11.8 136 163-314 381-551 (598)
469 3ney_A 55 kDa erythrocyte memb 97.5 2.3E-05 7.7E-10 70.5 1.4 60 370-432 18-78 (197)
470 2cbz_A Multidrug resistance-as 97.5 0.0023 8E-08 59.2 15.2 25 163-187 31-55 (237)
471 2zu0_C Probable ATP-dependent 97.5 0.0011 3.8E-08 62.6 13.2 24 163-186 46-69 (267)
472 3l82_B F-box only protein 4; T 97.5 9.6E-05 3.3E-09 66.3 5.4 92 265-356 118-222 (227)
473 3d31_A Sulfate/molybdate ABC t 97.5 0.00034 1.1E-08 68.6 9.6 25 163-187 26-50 (348)
474 3q5d_A Atlastin-1; G protein, 97.5 0.00013 4.6E-09 73.7 6.7 61 162-223 66-152 (447)
475 1mv5_A LMRA, multidrug resista 97.5 0.00032 1.1E-08 65.3 8.7 25 163-187 28-52 (243)
476 4a82_A Cystic fibrosis transme 97.5 0.00056 1.9E-08 72.1 11.6 137 163-315 367-538 (578)
477 1j8m_F SRP54, signal recogniti 97.4 0.00053 1.8E-08 65.8 10.1 92 371-469 98-224 (297)
478 1sgw_A Putative ABC transporte 97.4 0.0003 1E-08 64.1 7.8 25 163-187 35-59 (214)
479 3kl4_A SRP54, signal recogniti 97.4 0.00041 1.4E-08 69.9 9.2 22 371-392 97-118 (433)
480 3b60_A Lipid A export ATP-bind 97.4 0.001 3.5E-08 70.2 12.6 137 163-315 369-541 (582)
481 2yhs_A FTSY, cell division pro 97.4 0.00078 2.7E-08 68.6 10.9 24 163-186 293-316 (503)
482 2qi9_C Vitamin B12 import ATP- 97.4 0.0012 4.1E-08 61.6 11.5 25 163-187 26-50 (249)
483 2nq2_C Hypothetical ABC transp 97.4 0.00086 2.9E-08 62.8 10.3 25 163-187 31-55 (253)
484 2px0_A Flagellar biosynthesis 97.4 0.00051 1.8E-08 65.9 8.9 24 370-393 104-127 (296)
485 3b5x_A Lipid A export ATP-bind 97.4 0.00095 3.3E-08 70.4 11.8 25 163-187 369-393 (582)
486 2wsm_A Hydrogenase expression/ 97.3 0.00013 4.3E-09 66.6 4.3 24 371-394 30-53 (221)
487 2xxa_A Signal recognition part 97.3 0.00078 2.7E-08 68.1 10.3 92 371-470 100-226 (433)
488 2yl4_A ATP-binding cassette SU 97.3 0.001 3.6E-08 70.3 11.7 135 163-313 370-542 (595)
489 3qf4_A ABC transporter, ATP-bi 97.3 0.0011 3.9E-08 69.8 11.9 136 163-314 369-539 (587)
490 2pze_A Cystic fibrosis transme 97.3 0.0056 1.9E-07 56.2 14.5 25 163-187 34-58 (229)
491 2pjz_A Hypothetical protein ST 97.2 0.0012 4.2E-08 62.1 10.0 25 163-187 30-54 (263)
492 4f4c_A Multidrug resistance pr 97.2 0.00075 2.6E-08 77.8 10.2 136 163-314 444-614 (1321)
493 4ido_A Atlastin-1; GTPase, GTP 97.2 0.001 3.6E-08 66.9 10.0 101 371-480 67-191 (457)
494 3ney_A 55 kDa erythrocyte memb 97.2 5.5E-05 1.9E-09 67.9 0.5 63 159-223 15-78 (197)
495 2rcn_A Probable GTPase ENGC; Y 97.2 0.00028 9.6E-09 69.3 4.7 58 164-224 216-281 (358)
496 1rj9_A FTSY, signal recognitio 97.2 0.0039 1.4E-07 59.9 12.8 24 370-393 101-124 (304)
497 2xxa_A Signal recognition part 97.2 0.0011 3.7E-08 67.1 9.2 23 162-184 99-121 (433)
498 2d2e_A SUFC protein; ABC-ATPas 97.2 0.001 3.5E-08 62.1 8.4 24 163-186 29-52 (250)
499 1ko7_A HPR kinase/phosphatase; 97.1 0.00024 8.3E-09 68.2 3.8 96 297-395 73-168 (314)
500 4f4c_A Multidrug resistance pr 97.1 0.0011 3.7E-08 76.5 9.1 138 163-314 1105-1277(1321)
No 1
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=100.00 E-value=4.7e-37 Score=316.18 Aligned_cols=284 Identities=40% Similarity=0.617 Sum_probs=198.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+|+|.+|||||||+|+|++...+.+.+.+++|++...+.+.+.+..+.+|||||+..... ..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~--~~------------- 66 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ--DI------------- 66 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGG--GC-------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc--ch-------------
Confidence 689999999999999999999987777889999999999999999999999999999864211 00
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011511 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
+...+..++..++..+|++++|+|++.+.+..+..+..++... ++|+++|+||+|+........
T Consensus 67 --------------~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~ 130 (439)
T 1mky_A 67 --------------ISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREV 130 (439)
T ss_dssp --------------CCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHT
T ss_pred --------------HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHH
Confidence 1122345677888999999999999988888887888888765 899999999999865411222
Q ss_pred -HHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecC
Q 011511 324 -SEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (484)
Q Consensus 324 -~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~ 401 (484)
..++..++ +++++||++|.|+.+|++.+.+.+.+...............+|+++|.||||||||+|+|+|.....+++
T Consensus 131 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~ 210 (439)
T 1mky_A 131 KPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP 210 (439)
T ss_dssp HHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECC
T ss_pred HHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCC
Confidence 34555666 7899999999999999999988876432110000011234699999999999999999999998888999
Q ss_pred CCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 402 ~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+|+|++.....+. .+|..+.+|||||++....... ...+.+....+...++.+|++++|+|+..+++.++.++.+.
T Consensus 211 ~~gtT~d~~~~~i~-~~g~~~~l~Dt~G~~~~~~~~~--~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~ 287 (439)
T 1mky_A 211 IPGTTRDPVDDEVF-IDGRKYVFVDTAGLRRKSRVEP--RTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGL 287 (439)
T ss_dssp CC------CCEEEE-ETTEEEEESSCSCC-------------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCCcCCceEEEEE-ECCEEEEEEECCCCccccccch--hhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 99999998877665 4678899999999965432110 01122223345567889999999999999999888776543
No 2
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=100.00 E-value=2.4e-37 Score=318.05 Aligned_cols=278 Identities=47% Similarity=0.750 Sum_probs=196.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+|+|++|||||||+|+|+|...+.+.+++++|++.......+.+..+.+|||||+......
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--------------- 67 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--------------- 67 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------C---------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh---------------
Confidence 47899999999999999999999877778899999999999888888999999999998632110
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
+...+..++..++..+|++|+|+|+..+.+..+.++..++... ++|+++|+||+|+..... .
T Consensus 68 ---------------~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~--~~pvilv~NK~D~~~~~~-~ 129 (436)
T 2hjg_A 68 ---------------FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMRA-N 129 (436)
T ss_dssp ---------------HHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTC--CSCEEEEEECCCC------C
T ss_pred ---------------HHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCccchh-h
Confidence 1122345667788999999999999988888877777777654 899999999999875421 1
Q ss_pred hHHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecC
Q 011511 323 VSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSP 401 (484)
Q Consensus 323 ~~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~ 401 (484)
...++..++ +++++||++|.|+.+|++.+.+.+.+.... .......+|+++|.+|||||||+|+|+|.....++.
T Consensus 130 ~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~----~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~ 205 (436)
T 2hjg_A 130 IYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPET----KYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN 205 (436)
T ss_dssp CCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSS----CCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-
T ss_pred HHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccc----cccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecC
Confidence 223344555 789999999999999999998887643210 011234689999999999999999999998888999
Q ss_pred CCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 402 ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 402 ~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+|+|++.....+. .+|..+.||||||+++...+. ...+.+...+....++.+|++++|+|+..+++.++..++..
T Consensus 206 ~~gtT~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~ 281 (436)
T 2hjg_A 206 VAGTTRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGY 281 (436)
T ss_dssp --------CCEEEE-ETTEEEEETTHHHHTCBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred CCCceeeeeEEEEE-ECCeEEEEEECCCcCcCcccc---chHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHH
Confidence 99999998876665 467789999999998765432 34566767777788999999999999999999999876643
No 3
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=100.00 E-value=4e-36 Score=310.73 Aligned_cols=282 Identities=46% Similarity=0.723 Sum_probs=203.5
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
....++|+|+|++|||||||+|+|+|.....+.+.+++|.+.......+.+..+.+|||||+.....
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~------------- 86 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDE------------- 86 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC-------------------
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcch-------------
Confidence 3457899999999999999999999987777888999999999988888899999999999863111
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.+...+..++..++..+|++|+|+|+..+.+..+.++..++.+. ++|+++|+||+|+....
T Consensus 87 -----------------~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~--~~pvilV~NK~D~~~~~ 147 (456)
T 4dcu_A 87 -----------------PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT--KKPVVLAVNKLDNTEMR 147 (456)
T ss_dssp -----------------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC--CSCEEEEEECC------
T ss_pred -----------------HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc--CCCEEEEEECccchhhh
Confidence 11223446677788999999999999988888888888888764 89999999999987532
Q ss_pred hhhhHHHHhcCC-CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCccee
Q 011511 320 IMQVSEFWSLGF-SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTI 398 (484)
Q Consensus 320 ~~~~~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~ 398 (484)
. ....++..++ .++++||++|.|+.+|++.+.+.+..... ........+|+++|.+|+|||||+|+|++...+.
T Consensus 148 ~-~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~----~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~ 222 (456)
T 4dcu_A 148 A-NIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPE----TKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVI 222 (456)
T ss_dssp ----CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCS----SCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEE
T ss_pred h-hHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccc----cccccccceeEEecCCCCCHHHHHHHHhCCCccc
Confidence 1 1222334444 56899999999999999999887653321 1112345689999999999999999999998888
Q ss_pred ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhh
Q 011511 399 VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWR 478 (484)
Q Consensus 399 ~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~ 478 (484)
+...+|+|++.....+.. ++..+.+|||||+++...+. ...+.+...+....++.+|++++|+|+..++++++.++
T Consensus 223 ~~~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~---~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~ 298 (456)
T 4dcu_A 223 VSNVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVY---ETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRI 298 (456)
T ss_dssp ECC------CTTSEEEEE-TTEEEEETTGGGTTTBTTBC---CCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHH
T ss_pred cCCCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccc---hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHH
Confidence 999999999988777664 67789999999998765433 34566777777788999999999999999999999988
Q ss_pred hhhc
Q 011511 479 DHRW 482 (484)
Q Consensus 479 ~~~~ 482 (484)
++.+
T Consensus 299 ~~~~ 302 (456)
T 4dcu_A 299 AGYA 302 (456)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 4
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.87 E-value=7.2e-22 Score=190.37 Aligned_cols=163 Identities=24% Similarity=0.337 Sum_probs=115.9
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHHHH-hcCCCceeeecccC
Q 011511 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~-~~~~~~i~vSa~~g 341 (484)
+++...+..+|++++|+|++.|....+..+.+++ .++|.++|+||+|+.+..... ...++ ..+++++++||.++
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~ 90 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNG 90 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCc
Confidence 6778889999999999999999888776665554 489999999999998754332 23444 35778999999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011511 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.|+.+|++.+.+.+.................+++++|.||||||||+|+|+|...+.++..||+|++.....+ +..
T Consensus 91 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 166 (282)
T 1puj_A 91 QGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKE 166 (282)
T ss_dssp TTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE----TTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCC
Confidence 9999999988877653211000001123346899999999999999999999999999999999998764332 467
Q ss_pred EEEEEcCCCccCc
Q 011511 422 FRLIDTAGIRKRA 434 (484)
Q Consensus 422 i~liDTPG~~~~~ 434 (484)
+.|+||||+..+.
T Consensus 167 ~~l~DtpG~~~~~ 179 (282)
T 1puj_A 167 LELLDTPGILWPK 179 (282)
T ss_dssp EEEEECCCCCCSC
T ss_pred EEEEECcCcCCCC
Confidence 9999999998764
No 5
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.84 E-value=3.7e-20 Score=162.73 Aligned_cols=158 Identities=42% Similarity=0.692 Sum_probs=115.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+++|.+|+|||||+|+|.+.........++++.......+.+.+..+.+|||||+........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------------- 67 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEK-------------- 67 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCH--------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHH--------------
Confidence 689999999999999999999876555667778888887777888888999999999875432111
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhh
Q 011511 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQV 323 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~ 323 (484)
.+.......+..+|++++|+|+..+.......+..++... +.|+++|+||+|+..... ..
T Consensus 68 -----------------~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~-~~ 127 (161)
T 2dyk_A 68 -----------------KIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRK--GKPVILVATKVDDPKHEL-YL 127 (161)
T ss_dssp -----------------HHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH--TCCEEEEEECCCSGGGGG-GC
T ss_pred -----------------HHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhc--CCCEEEEEECcccccchH-hH
Confidence 1223455677899999999999887777666677777664 899999999999976522 22
Q ss_pred HHHHhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011511 324 SEFWSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 324 ~~~~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
..+...++ +++++||++|.|++++++.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 128 GPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 22335566 789999999999999999987754
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=1.2e-19 Score=176.60 Aligned_cols=164 Identities=27% Similarity=0.336 Sum_probs=125.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+|+|++|||||||+|+|+|.....++..+++|.....+.....+.++.+|||||+..... .
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~---~------------ 71 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD---A------------ 71 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS---H------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh---H------------
Confidence 4579999999999999999999988777788888898887777777888999999999875321 1
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh--
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-- 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-- 320 (484)
+...+...+..++..+|++++|+|+..+....+..+...+.....+.|+++|+||+|+.....
T Consensus 72 ---------------l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 136 (301)
T 1wf3_A 72 ---------------LGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEA 136 (301)
T ss_dssp ---------------HHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHH
T ss_pred ---------------HHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHH
Confidence 112234566678889999999999988777666666566655434789999999999975432
Q ss_pred hhhHHHHhcC-CCceeeecccCCCCchhhHHHHHHhhh
Q 011511 321 MQVSEFWSLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 321 ~~~~~~~~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
......+ .+ .+++++||++|.|++++++.+...++.
T Consensus 137 ~~~~~~~-~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 137 MKAYHEL-LPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp HHHHHHT-STTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred HHHHHHh-cCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 2222222 22 357999999999999999999887653
No 7
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.80 E-value=4.1e-20 Score=185.01 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=125.7
Q ss_pred HHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-----hhhHH--HHhcCC---Cce
Q 011511 265 QATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SPL 334 (484)
Q Consensus 265 ~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~--~~~~~~---~~i 334 (484)
.+......++++++|+|+.++.......+.++ ..++|+++|+||+|+.+... ..... +...++ .++
T Consensus 64 ~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~----l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~ 139 (369)
T 3ec1_A 64 MLHRIGESKALVVNIVDIFDFNGSFIPGLPRF----AADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVC 139 (369)
T ss_dssp HHHHHHHHCCEEEEEEETTCSGGGCCSSHHHH----CTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEE
T ss_pred HHHHhhccCcEEEEEEECCCCCCchhhHHHHH----hCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEE
Confidence 33344577899999999987664443333333 34789999999999976431 11111 233455 578
Q ss_pred eeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcC-----cceeecCCCCceecc
Q 011511 335 PISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGE-----DRTIVSPISGTTRDA 409 (484)
Q Consensus 335 ~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~-----~~~~~~~~~gtt~~~ 409 (484)
.+||++|.|+++|++.+.++.. ..+++++|.+|+|||||+|+|++. ....++..||||++.
T Consensus 140 ~iSA~~g~gi~~L~~~I~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~ 205 (369)
T 3ec1_A 140 LVSAAKGIGMAKVMEAINRYRE--------------GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDM 205 (369)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHT--------------TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEE
T ss_pred EEECCCCCCHHHHHHHHHhhcc--------------cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEee
Confidence 9999999999999999877642 247999999999999999999997 567789999999987
Q ss_pred cceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 410 IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 410 ~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....+ +..+.++||||+....... .......+... ...+..|+++++++..+.
T Consensus 206 ~~~~~----~~~~~liDtPG~~~~~~~~---~~l~~~~l~~~-~~~~~i~~~~~~l~~~~~ 258 (369)
T 3ec1_A 206 IEIPL----ESGATLYDTPGIINHHQMA---HFVDARDLKII-TPKREIHPRVYQLNEGQT 258 (369)
T ss_dssp EEEEC----STTCEEEECCSCCCCSSGG---GGSCTTTHHHH-SCSSCCCCEEEEECTTEE
T ss_pred EEEEe----CCCeEEEeCCCcCcHHHHH---HHHhHHHHHHH-hcccccCceEEEEcCCce
Confidence 65443 3458999999998653111 11111111111 112678999999998543
No 8
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.80 E-value=4e-19 Score=173.79 Aligned_cols=167 Identities=30% Similarity=0.458 Sum_probs=129.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..-.|+++|.+|||||||+|+|+|.+...++..+++|.....+..... +..+.+|||||+..... +...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~-~~~l--------- 78 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKK-SDVL--------- 78 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCT-TCHH---------
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCcccc-chhH---------
Confidence 356899999999999999999999987778889999999988888888 88999999999976431 1111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHH-HHHHHhhcCCCeEEEEecccCCC-ch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI-ADWLRKNYMDKFIILAVNKCESP-RK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~-~~~l~~~~~~~p~ilV~NK~Dl~-~~ 318 (484)
...+...+..++..+|++++|+|+..+.+..+... ...+... +.|+++|+||+|+. ..
T Consensus 79 ------------------~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~ 138 (308)
T 3iev_A 79 ------------------GHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPA 138 (308)
T ss_dssp ------------------HHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSG
T ss_pred ------------------HHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCH
Confidence 12234566678889999999999988777666665 5555554 78999999999997 33
Q ss_pred hh-hhhHH-HH-hc--CCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 319 GI-MQVSE-FW-SL--GFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~-~~~~~-~~-~~--~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.. ..... +. .. ..+++++||++|.|++++++.+...+...
T Consensus 139 ~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 139 KNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp GGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 22 22222 21 12 25789999999999999999999988643
No 9
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.80 E-value=1.1e-19 Score=162.42 Aligned_cols=161 Identities=27% Similarity=0.335 Sum_probs=117.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+|+|.+|||||||+|+|++.....+...+++|.+...+.+.+++..+.+|||||+..... .+ +.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~-~~-------- 71 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD---EV-ER-------- 71 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS---HH-HH--------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh---HH-HH--------
Confidence 4689999999999999999999876555677888888888888888888899999999864221 00 00
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc-CCCeEEEEecccCCCchhhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~ 321 (484)
.........+..+|++++|+|+..+.+.....+...+.+.. .+.|+++|+||+|+......
T Consensus 72 ------------------~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~ 133 (172)
T 2gj8_A 72 ------------------IGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 133 (172)
T ss_dssp ------------------HHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE
T ss_pred ------------------HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh
Confidence 00122335678899999999998776655555555554432 36899999999998542211
Q ss_pred hhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 322 QVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 322 ~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
. ....+.+++++||++|.|++++++.+.+.+.
T Consensus 134 -~--~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 134 -M--SEVNGHALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp -E--EEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred -h--hhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0 0112457899999999999999999987654
No 10
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.80 E-value=3.8e-19 Score=165.43 Aligned_cols=173 Identities=23% Similarity=0.264 Sum_probs=122.4
Q ss_pred CCCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEE-eCCceeeEeeccccccccCCCchhhhhh
Q 011511 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (484)
Q Consensus 158 ~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~~~~~~~~ 235 (484)
.+....++|+++|.+|+|||||+|+|++.. ...+...+++|......... ..+..+.+|||||+........ ..+
T Consensus 24 ~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~-~~~-- 100 (223)
T 4dhe_A 24 LPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGA-AKA-- 100 (223)
T ss_dssp SCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCST-HHH--
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChh-hHH--
Confidence 344567899999999999999999999986 45677788888877665554 4567899999999764322211 000
Q ss_pred hhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCC
Q 011511 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 236 ~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
.+. .+...+......+|++++|+|+..+....+..+..++... +.|+++|+||+|+
T Consensus 101 ---------------------~~~-~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~--~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 101 ---------------------HWE-QLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT--GKPIHSLLTKCDK 156 (223)
T ss_dssp ---------------------HHH-HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG--CCCEEEEEECGGG
T ss_pred ---------------------HHH-HHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc--CCCEEEEEecccc
Confidence 000 0112223334458899999999888777777777777664 8899999999999
Q ss_pred Cchhhhhh-----HH-HHh-------cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 316 PRKGIMQV-----SE-FWS-------LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~~-----~~-~~~-------~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
........ .. +.. ...+++++||++|.|+++++++|.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 76432111 11 111 34578999999999999999999988754
No 11
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.79 E-value=1.2e-19 Score=181.61 Aligned_cols=181 Identities=23% Similarity=0.218 Sum_probs=119.9
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-----hhhHH--HHhcCC---Cc
Q 011511 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSE--FWSLGF---SP 333 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~--~~~~~~---~~ 333 (484)
+.+......++++++|+|+.++. ..+...+.+...++|+++|+||+|+.+... ..... +...++ ++
T Consensus 61 ~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v 136 (368)
T 3h2y_A 61 RILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDV 136 (368)
T ss_dssp HHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccE
Confidence 44445556778999999987642 222233444445899999999999976431 11111 233455 67
Q ss_pred eeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCc------ceeecCCCCcee
Q 011511 334 LPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGED------RTIVSPISGTTR 407 (484)
Q Consensus 334 i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~------~~~~~~~~gtt~ 407 (484)
+.+||++|.|+++|++.+.++.. ..+++++|.+|+|||||+|+|++.. ...++..||||+
T Consensus 137 ~~iSA~~g~gi~~L~~~l~~~~~--------------~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~ 202 (368)
T 3h2y_A 137 FLISAAKGQGIAELADAIEYYRG--------------GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTL 202 (368)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHT--------------TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----
T ss_pred EEEeCCCCcCHHHHHhhhhhhcc--------------cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeec
Confidence 89999999999999999876542 2479999999999999999999963 456789999999
Q ss_pred cccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 408 DAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 408 ~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
+.....+ +..+.++||||+.++.... .......+..+ ...+..+..+++++....
T Consensus 203 ~~~~~~~----~~~~~liDtPG~~~~~~~~---~~l~~~~l~~~-~~~~~i~~~~~~l~~~~~ 257 (368)
T 3h2y_A 203 DLIDIPL----DEESSLYDTPGIINHHQMA---HYVGKQSLKLI-TPTKEIKPMVFQLNEEQT 257 (368)
T ss_dssp CEEEEES----SSSCEEEECCCBCCTTSGG---GGSCHHHHHHH-SCSSCCCCEEEEECTTEE
T ss_pred ceEEEEe----cCCeEEEeCCCcCcHHHHH---HHhhHHHHHHh-ccccccCceEEEEcCCCE
Confidence 8765443 2347999999998753211 11112212211 123677899999987543
No 12
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=99.78 E-value=7.4e-20 Score=174.38 Aligned_cols=145 Identities=23% Similarity=0.290 Sum_probs=105.0
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hHHHH-hcCCCceeeecccC
Q 011511 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VSEFW-SLGFSPLPISAISG 341 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~~~-~~~~~~i~vSa~~g 341 (484)
+++...+.++|++++|+|++.|.......+. ++ ++|.++|+||+|+.+..... ...++ ..++++ .+||.++
T Consensus 13 ~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~ 85 (262)
T 3cnl_A 13 RQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGE 85 (262)
T ss_dssp HHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTS
T ss_pred HHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCC
Confidence 5677888999999999999998777654433 22 78999999999998754322 23333 457788 9999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc
Q 011511 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.|+++|++.+...+ .+++++|.+|+|||||+|+|.|.....+++.+|+|+....... +..
T Consensus 86 ~gi~~L~~~l~~~~----------------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~----~~~ 145 (262)
T 3cnl_A 86 PRKVLLKKLSFDRL----------------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL----ENG 145 (262)
T ss_dssp CHHHHHHHHCCCTT----------------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC----TTS
T ss_pred cCHHHHHHHHHHhh----------------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe----CCC
Confidence 99988877664322 4899999999999999999999988889999999998653322 357
Q ss_pred EEEEEcCCCccCcc
Q 011511 422 FRLIDTAGIRKRAA 435 (484)
Q Consensus 422 i~liDTPG~~~~~~ 435 (484)
+.|+||||+..+..
T Consensus 146 ~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 146 VKILDTPGILYKNI 159 (262)
T ss_dssp CEEESSCEECCCCC
T ss_pred EEEEECCCcccCcC
Confidence 89999999997654
No 13
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=3e-19 Score=169.92 Aligned_cols=156 Identities=26% Similarity=0.297 Sum_probs=115.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCc--hhhhhhhhhhhc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQP--NIMEDLAITTTI 241 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~--~~~~~~~~~~~~ 241 (484)
++|+++|.+|||||||+|+|+|.. ..+++.+++|.+...+.+.+++..+.+|||||+........ ...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~--------- 71 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQD--------- 71 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHH---------
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHH---------
Confidence 689999999999999999999986 67888999999999999999999999999999976543210 000
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
......++ ..+|++++|+|++.. .....+..++.+. +.|+++|+||+|+....
T Consensus 72 ---------------------e~i~~~~~~~~~~d~vi~VvDas~~--~~~~~l~~~l~~~--~~pvilv~NK~Dl~~~~ 126 (256)
T 3iby_A 72 ---------------------EQIAAQSVIDLEYDCIINVIDACHL--ERHLYLTSQLFEL--GKPVVVALNMMDIAEHR 126 (256)
T ss_dssp ---------------------HHHHHHHHHHSCCSEEEEEEEGGGH--HHHHHHHHHHTTS--CSCEEEEEECHHHHHHT
T ss_pred ---------------------HHHHHHHHhhCCCCEEEEEeeCCCc--hhHHHHHHHHHHc--CCCEEEEEEChhcCCcC
Confidence 01222333 679999999998752 2223344444443 79999999999986543
Q ss_pred hh-h-h-HHHHhcCCCceeeecccCCCCchhhHHHHHH
Q 011511 320 IM-Q-V-SEFWSLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~-~-~-~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.. . . .-....+++++++||++|.|++++++.+.+.
T Consensus 127 ~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 127 GISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp TCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 21 1 1 1122357899999999999999999999775
No 14
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=8.4e-19 Score=156.76 Aligned_cols=156 Identities=19% Similarity=0.241 Sum_probs=111.6
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|||||||+|+|++... .....++.+.......+.+++..+.+|||||+..+.....
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 73 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRA----------- 73 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCC-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHH-----------
Confidence 3478999999999999999999998753 2333455555555556677888899999999876544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
..+..+|++++|+|+..+........+..+... +.|+++|+||+|+.....
T Consensus 74 ---------------------------~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~--~~p~ilv~nK~Dl~~~~~ 124 (178)
T 2lkc_A 74 ---------------------------RGAQVTDIVILVVAADDGVMPQTVEAINHAKAA--NVPIIVAINKMDKPEANP 124 (178)
T ss_dssp ---------------------------SSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGG--SCCEEEEEETTTSSCSCH
T ss_pred ---------------------------HHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhC--CCCEEEEEECccCCcCCH
Confidence 234678999999998776555544444444433 789999999999976422
Q ss_pred hhhHHHHh--------cC--CCceeeecccCCCCchhhHHHHHHhhh
Q 011511 321 MQVSEFWS--------LG--FSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 321 ~~~~~~~~--------~~--~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
........ .+ ++++++||++|.|++++++++.+.+..
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 125 DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 11111111 11 368899999999999999999887654
No 15
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=1.7e-18 Score=177.85 Aligned_cols=187 Identities=26% Similarity=0.394 Sum_probs=130.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+|+|++|||||||+|+|+|.....+++.+++|.+...+.+.++|..+.+|||||+...........+
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e-------- 250 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVE-------- 250 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------C--------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHH--------
Confidence 468999999999999999999999887788999999999988889999999999999998543221100000
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
.+. ...+..++..+|++++|+|+..+.+..+..+...+... ++|+++|+||+|+......
T Consensus 251 ---------------~~~---~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~--~~~~ilv~NK~Dl~~~~~~ 310 (439)
T 1mky_A 251 ---------------KYS---NYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR--GRASVVVFNKWDLVVHREK 310 (439)
T ss_dssp ---------------CSC---CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSTTGGG
T ss_pred ---------------HHH---HHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc--CCCEEEEEECccCCCchhh
Confidence 000 02234567889999999999887777666666666654 8999999999998764321
Q ss_pred --h-hH-----HHHh-cCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhh
Q 011511 322 --Q-VS-----EFWS-LGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALV 392 (484)
Q Consensus 322 --~-~~-----~~~~-~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Ll 392 (484)
. .. .+.. ...+++++||++|.|++++++.+.+.+.... .++ +|+.+|.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~------------~~i---------~t~~ln~~l 369 (439)
T 1mky_A 311 RYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASYT------------TKV---------PSSAINSAL 369 (439)
T ss_dssp CHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHHT------------CCC---------CHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhhc------------ccC---------CHHHHHHHH
Confidence 1 11 1111 2357899999999999999999987765332 122 799999999
Q ss_pred cCcce
Q 011511 393 GEDRT 397 (484)
Q Consensus 393 g~~~~ 397 (484)
+....
T Consensus 370 ~~~~~ 374 (439)
T 1mky_A 370 QKVLA 374 (439)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87554
No 16
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.77 E-value=6.2e-19 Score=181.58 Aligned_cols=163 Identities=25% Similarity=0.307 Sum_probs=98.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+|+|++|||||||+|+|++.+...+++.+++|.+.....+.+++.++.+|||||+.......+.+
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~----------- 301 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE----------- 301 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC-------------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH-----------
Confidence 568999999999999999999998777888899999999988889999999999999996533221110
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
..+.+..++..+|++++|+|+..+....... ...++.. +.+.|+++|+||+|+......
T Consensus 302 -------------------gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~ 361 (476)
T 3gee_A 302 -------------------GIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADA 361 (476)
T ss_dssp -------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHH
T ss_pred -------------------HHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccch
Confidence 0123345668899999999998876653322 2233333 347999999999999865433
Q ss_pred hhHHHHhc-CCCceeeecccCCCCchhhHHHHHHhh
Q 011511 322 QVSEFWSL-GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 322 ~~~~~~~~-~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....+... ..+++++||++|.|+++|++.+.+.+.
T Consensus 362 ~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 362 LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 22222222 357899999999999999999988775
No 17
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.77 E-value=2.7e-18 Score=176.12 Aligned_cols=167 Identities=28% Similarity=0.416 Sum_probs=119.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|++|||||||+|+|++.....++..+++|.+.....+.+++..+.+|||||+......... .+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~-~e~------- 245 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYET-TEK------- 245 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCC-CSH-------
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccch-HHH-------
Confidence 468999999999999999999999887778889999999888888889999999999998654332110 000
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
+.......++..+|++++|+|+.++.+..+..+...+... ++|+++|+||+|+......
T Consensus 246 -------------------~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~--~~~iiiv~NK~Dl~~~~~~ 304 (436)
T 2hjg_A 246 -------------------YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDES 304 (436)
T ss_dssp -------------------HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCTT
T ss_pred -------------------HHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc--CCcEEEEEECccCCCcchH
Confidence 0012344577889999999999998888887777766654 8999999999998764321
Q ss_pred h---hHH----HH--hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 322 Q---VSE----FW--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 322 ~---~~~----~~--~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
. ... .. ..+.+++++||++|.|++++++.+.+.+..
T Consensus 305 ~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 305 TMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 1 111 11 124588999999999999999999887653
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=8.8e-18 Score=152.30 Aligned_cols=169 Identities=26% Similarity=0.346 Sum_probs=117.3
Q ss_pred CCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011511 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 158 ~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.+....++|+++|.+|||||||+|+|++.........+++|....... .+..+.+|||||+........ ...
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~-~~~---- 89 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL---VNSKYYFVDLPGYGYAKVSKK-ERM---- 89 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE---ETTTEEEEECCCBSSSCCCHH-HHH----
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE---ECCcEEEEECCCCccccCChh-hHH----
Confidence 344567899999999999999999999987556666777776654422 256799999999753221110 000
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
. ...+..........+|++++|+|+..+.......+..++... +.|+++|+||+|+..
T Consensus 90 -------------------~-~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~ 147 (195)
T 3pqc_A 90 -------------------L-WKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKVK 147 (195)
T ss_dssp -------------------H-HHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSC
T ss_pred -------------------H-HHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcCC
Confidence 0 001112233334556999999998877777767777777765 899999999999975
Q ss_pred hhhhhh-----HHHHh--cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQV-----SEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~~-----~~~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...... ..+.. ..++++++||++|.|++++++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 148 MSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 432211 11222 2358899999999999999999988764
No 19
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.77 E-value=6.8e-18 Score=153.35 Aligned_cols=169 Identities=22% Similarity=0.249 Sum_probs=107.9
Q ss_pred CCCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhh
Q 011511 158 VPEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 158 ~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~ 236 (484)
.+....++|+++|.+|+|||||+|+|++.. .......+++|....... + +..+.+|||||+........ ..+
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~-~~~--- 90 (195)
T 1svi_A 18 YPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKS-ERE--- 90 (195)
T ss_dssp SCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHH-HHH---
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHH-HHH---
Confidence 344568999999999999999999999875 344556677666654432 2 45799999999754322110 000
Q ss_pred hhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCC
Q 011511 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
.+ ..+..........+|++++|+|+..+.+..+..+..++... +.|+++|+||+|+.
T Consensus 91 --------------------~~-~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 91 --------------------AW-GRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY--GIPVIVIATKADKI 147 (195)
T ss_dssp --------------------HH-HHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGS
T ss_pred --------------------HH-HHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEECcccC
Confidence 00 00112222223344999999999888777776677777664 89999999999997
Q ss_pred chhhhhh-----HHHHh--cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 317 RKGIMQV-----SEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~~~~-----~~~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....... ..... .+.+++++||++|.|++++++++.+.++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 148 PKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence 6432211 11122 2457899999999999999999987653
No 20
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.77 E-value=9.1e-19 Score=180.46 Aligned_cols=160 Identities=31% Similarity=0.449 Sum_probs=122.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccc-cccCCCchhhhhhhhhhhc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 241 (484)
.++|+|+|.+|||||||+|+|++.+...+.+++++|.+.....+.+++.++.+|||||+. .....-+.+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~---------- 312 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERL---------- 312 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC----------
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHH----------
Confidence 479999999999999999999998767788999999999999999999999999999987 432211111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI- 320 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~- 320 (484)
| .+.+..++..+|++|+|+|+..+.+..+..+++.+ .++|+++|+||+|+.....
T Consensus 313 ---g-----------------i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~ 368 (482)
T 1xzp_A 313 ---G-----------------IERTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINE 368 (482)
T ss_dssp ---C-----------------HHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCH
T ss_pred ---H-----------------HHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCH
Confidence 0 03445678899999999999877665554444433 4789999999999975311
Q ss_pred hhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 321 MQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.....+...+.+++++||++|.|+++|++.|.+.+.
T Consensus 369 ~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 369 EEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp HHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred HHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 111222233458899999999999999999988654
No 21
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.77 E-value=7.4e-19 Score=157.77 Aligned_cols=166 Identities=21% Similarity=0.106 Sum_probs=108.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.. ....+.+++.........+++ ..+.+|||||+..+.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQ----------- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCG-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 5799999999999999999999654 233344444444455556666 4568999999876544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|...+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 73 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 73 ---------------------------TYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp ---------------------------GGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred ---------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 234678999999998754322221 1222222221 3689999999999865
Q ss_pred hhhhh---hH-HHHhcCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchh
Q 011511 318 KGIMQ---VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSS 386 (484)
Q Consensus 318 ~~~~~---~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKST 386 (484)
..... .. .....+.+++++||++|.|+++++..+.+.+.... |..++||||
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~------------------~~~~~gkss 180 (181)
T 3t5g_A 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMD------------------GACSQGKSS 180 (181)
T ss_dssp TCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC-----------------------CCBSC
T ss_pred cceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhc------------------CCcccCcCC
Confidence 32211 11 12345678999999999999999999988775332 667788886
No 22
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.77 E-value=2.1e-18 Score=174.72 Aligned_cols=165 Identities=22% Similarity=0.288 Sum_probs=117.9
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-eeeEeeccccccccCCCchhhhhhhh
Q 011511 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
+....++|+++|++|+|||||+|+|++.........+++|.+.....+.+.+. .+.+|||||+..+........
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~----- 104 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV----- 104 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH-----
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH-----
Confidence 34457899999999999999999999987666778889999888888888776 899999999987554332111
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
+.+...+..+|++|+|+|+ +.......+..++.+. +.|+++|+||+|+..
T Consensus 105 --------------------------~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~--~~piIvV~NK~Dl~~ 154 (423)
T 3qq5_A 105 --------------------------EKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM--EIPFVVVVNKIDVLG 154 (423)
T ss_dssp --------------------------HHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT--TCCEEEECCCCTTTT
T ss_pred --------------------------HHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc--CCCEEEEEeCcCCCC
Confidence 3455677889999999997 4555556677777775 899999999999987
Q ss_pred hhhhhhHHHH--hcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGIMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~~~~~~~~--~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.......... ..+++++++||++|.|++++++.+.+.+...
T Consensus 155 ~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 155 EKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 5443222222 2356899999999999999999999988543
No 23
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=152.52 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=111.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++.... ....++.+.......+.+.+ ..+.+|||||.........
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 76 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITS---------- 76 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCG----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHH----------
Confidence 3679999999999999999999987533 34445555566666666777 5689999999876544432
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
.++..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+...
T Consensus 77 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 77 ----------------------------TYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred ----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 335778999999998764333221 233334444457899999999998764
Q ss_pred hhhh---hH-HHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQ---VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~---~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... .. .....+++++++||++|.|++++++.+.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3221 11 123346789999999999999999999887654
No 24
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.76 E-value=1.1e-18 Score=167.77 Aligned_cols=163 Identities=22% Similarity=0.260 Sum_probs=118.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|||||||+|+|+|.. ..+++.+++|.....+.+.+.+..+.+|||||+...........
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~---------- 71 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTS---------- 71 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CC----------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCC----------
Confidence 5789999999999999999999987 67888999999999988888889999999999987543211000
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
+...+ .........+|++++|+|+... .....+..++.+. +.|+++|+||+|+.......
T Consensus 72 ---------------~~e~i-~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~--~~p~ivv~NK~Dl~~~~~~~ 131 (274)
T 3i8s_A 72 ---------------LDEQI-ACHYILSGDADLLINVVDASNL--ERNLYLTLQLLEL--GIPCIVALNMLDIAEKQNIR 131 (274)
T ss_dssp ---------------HHHHH-HHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--TCCEEEEEECHHHHHHTTEE
T ss_pred ---------------HHHHH-HHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhc--CCCEEEEEECccchhhhhHH
Confidence 00000 1111223689999999998752 2233344555555 89999999999986532211
Q ss_pred --hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 323 --VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 323 --~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ....+++++++||++|.|++++++.+.+.+.
T Consensus 132 ~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 132 IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 111 2235789999999999999999999987664
No 25
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.76 E-value=5.3e-18 Score=174.96 Aligned_cols=169 Identities=28% Similarity=0.393 Sum_probs=124.4
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|+|||||+|+|++.....++..+++|.+.....+.+++..+.+|||||+........ ..+.
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-~~e~------ 265 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE-TTEK------ 265 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC-CCSH------
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch-HHHH------
Confidence 346899999999999999999999987778889999999998888888999999999999865332110 0000
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
+.......++..+|++|+|+|+..+....+..+..++... ++|+++|+||+|+.....
T Consensus 266 --------------------~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~ 323 (456)
T 4dcu_A 266 --------------------YSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA--GKAVVIVVNKWDAVDKDE 323 (456)
T ss_dssp --------------------HHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT--TCEEEEEEECGGGSCCCS
T ss_pred --------------------HHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc--CCCEEEEEEChhcCCCch
Confidence 0112344577889999999999998888888888887775 899999999999975322
Q ss_pred hh---hHHHHh------cCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 321 MQ---VSEFWS------LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 321 ~~---~~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.. ...... ...+++++||++|.|++++++.+.+.+...
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 324 STMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp SHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 11 111111 145889999999999999999998876543
No 26
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.76 E-value=3.4e-18 Score=151.42 Aligned_cols=156 Identities=28% Similarity=0.382 Sum_probs=104.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|++|||||||+|+|++.. ......+++|.......+.+++..+.+|||||+..+..... .+
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--~~--------- 70 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE--------- 70 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSH--HH---------
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcch--hH---------
Confidence 3689999999999999999999865 33455677777777777778888999999999876432210 00
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.....++ ..+|++++|+|+... .....+...+.+. +.|+++|+||+|+.....
T Consensus 71 ---------------------~~~~~~~~~~~~~~~i~v~D~~~~--~~~~~~~~~~~~~--~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 71 ---------------------IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLMEM--GANLLLALNKMDLAKSLG 125 (165)
T ss_dssp ---------------------HHHHHHHHHHCCSEEEEEEETTCH--HHHHHHHHHHHHT--TCCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEecCCch--hHhHHHHHHHHhc--CCCEEEEEEchHhccccC
Confidence 1111222 378999999997642 1112233334433 799999999999864321
Q ss_pred h--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 321 ~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
. ....+ ...+.+++++||++|.|++++++.+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 126 IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 1 11112 23467899999999999999999988765
No 27
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=1.9e-18 Score=156.91 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=104.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||.......
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 80 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFD-PELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL------------- 80 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-------------
Confidence 579999999999999999999976532 11122222223233344443 46899999997654332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
....+..+|++++|+|+..+...... .++..+.... .+.|+++|+||+|+..
T Consensus 81 -------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 81 -------------------------TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp -------------------------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred -------------------------hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 22556789999999998765332222 1222333221 3689999999999954
Q ss_pred hhhh--hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchh
Q 011511 318 KGIM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSS 386 (484)
Q Consensus 318 ~~~~--~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKST 386 (484)
.... .... ....+++++++||+++.|++++++++.+.+.+..... -.+.+|+||||
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~-------------~~~~~n~gkSs 194 (195)
T 1x3s_A 136 REVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGLW-------------ESENQNSGPSS 194 (195)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSGGGT-------------CC---------
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhhhhh-------------cccccCCCCCC
Confidence 3221 1122 2235678899999999999999999988775432110 01345899997
No 28
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=5.2e-18 Score=156.39 Aligned_cols=157 Identities=18% Similarity=0.140 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++... .....+..+.......+.+.+ ..+.+|||||...+....
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~----------- 86 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTIT----------- 86 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHH-----------
Confidence 468999999999999999999997653 223334444455555566666 568999999986544332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
..++..+|++++|+|+..+...... .++..+.... .+.|+++|+||+|+..
T Consensus 87 ---------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 139 (213)
T 3cph_A 87 ---------------------------TAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET 139 (213)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred ---------------------------HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 1456789999999998764332221 2333333322 3689999999999953
Q ss_pred hhhh--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIM--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... ....+ ...+++++++||++|.|+++++.++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 140 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 2211 11112 2346789999999999999999999887654
No 29
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.76 E-value=7.9e-18 Score=157.35 Aligned_cols=168 Identities=20% Similarity=0.257 Sum_probs=111.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|||||||+|+|++.... ....+++|.........+.+..+.+|||||+...........
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~-------- 97 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTI-------- 97 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHH--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhH--------
Confidence 34689999999999999999999987643 566777888887777777788999999999864221111000
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH---HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE---EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~---~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
...........+|++|+|+|+..+.+.... .++..+.....+.|+++|+||+|+..
T Consensus 98 ---------------------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~ 156 (228)
T 2qu8_A 98 ---------------------EMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCN 156 (228)
T ss_dssp ---------------------HHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC
T ss_pred ---------------------HHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCC
Confidence 001122335678999999999876554322 23334444334789999999999875
Q ss_pred hhhhh------hHHHHh-cC--CCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGIMQ------VSEFWS-LG--FSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~~~------~~~~~~-~~--~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... ...+.. .+ .+++++||++|.|+++++..+.+.+...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 157 MDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp --CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHH
Confidence 32211 112222 33 6789999999999999999998877543
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=8.3e-18 Score=152.81 Aligned_cols=158 Identities=20% Similarity=0.172 Sum_probs=110.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++... .....+..+.......+.+.+ ..+.+|||||.......
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------ 81 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI------------ 81 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh------------
Confidence 367999999999999999999997653 233345555555556666666 46899999997654332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
...++..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 82 --------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 135 (196)
T 3tkl_A 82 --------------------------TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 135 (196)
T ss_dssp --------------------------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred --------------------------HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 22556889999999998764332221 233333332 23689999999999976
Q ss_pred hhhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... ... ....+++++++||++|.|+++++.++.+.+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 136 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 43221 111 234577899999999999999999998877643
No 31
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.74 E-value=1.2e-17 Score=159.12 Aligned_cols=157 Identities=26% Similarity=0.355 Sum_probs=115.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|||||||+|+|+|.. ..+++.+++|.....+.+...+..+.+|||||+..+...... +
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--e--------- 72 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID--E--------- 72 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH--H---------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH--H---------
Confidence 4689999999999999999999976 457888999999888888888889999999999765443210 0
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.....++ ..+|++++|+|++.. .....+...+.+. +.|+++|+||+|+.....
T Consensus 73 ---------------------~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~--~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 73 ---------------------KIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEM--EKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp ---------------------HHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTT--TCCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhc--CCCEEEEEECcCCCCccc
Confidence 1111222 579999999998753 1222333444443 899999999999865322
Q ss_pred h--hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 321 M--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ~--~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
. .... ....+++++++||++|.|++++++.+.+...
T Consensus 128 i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 128 MKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 1 1111 2235789999999999999999999988654
No 32
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=8.5e-18 Score=160.41 Aligned_cols=169 Identities=16% Similarity=0.193 Sum_probs=118.0
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCC-ceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...++|+|+|++|||||||+|+|++.........+. +|.........+.+..+.+|||||+.........+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~------- 92 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALY------- 92 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHH-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHH-------
Confidence 346899999999999999999999887554444444 778888878888899999999999986544332211
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcC---CCeEEEEec-ccCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYM---DKFIILAVN-KCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~---~~p~ilV~N-K~Dl 315 (484)
..+.+.+...+..+|++|+|+|+.. +...+..+..++.+.+. ..|+++|+| |+|+
T Consensus 93 --------------------~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl 151 (260)
T 2xtp_A 93 --------------------KEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL 151 (260)
T ss_dssp --------------------HHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred --------------------HHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEccccc
Confidence 1122444556788999999999874 45555555566665432 457777776 9998
Q ss_pred Cchhhhh------------hHHHHhcC---CCceeeecccCCCCchhhHHHHHHhhh
Q 011511 316 PRKGIMQ------------VSEFWSLG---FSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~------------~~~~~~~~---~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... ........ +..+++||+++.|+++++..+.+.+..
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 152 NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp TTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 7542222 11111111 333889999999999999999888764
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.73 E-value=1.1e-17 Score=148.25 Aligned_cols=152 Identities=18% Similarity=0.223 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|+|||||+|+|.+...... . .|.......+.+.+..+.+|||||.........
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~--~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------------- 69 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTT--I--PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWR------------- 69 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCC--C--CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCc--C--CcCccceEEEEECCEEEEEEECCCChhhhHHHH-------------
Confidence 57999999999999999999987653221 1 233444556677788999999999865432221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhh-cCCCeEEEEecccCCCchh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKN-YMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~~ 319 (484)
.++..+|++++|+|+..+.+... ..+...+... ..+.|+++|+||+|+....
T Consensus 70 -------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 124 (171)
T 1upt_A 70 -------------------------CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 124 (171)
T ss_dssp -------------------------GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred -------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence 34568999999999887644322 1222222221 2478999999999997642
Q ss_pred hhh-hHHH------HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 320 IMQ-VSEF------WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 320 ~~~-~~~~------~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... .... ...+++++++||++|.|++++++++.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 125 TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence 111 1111 123457899999999999999999988764
No 34
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=6.1e-18 Score=153.23 Aligned_cols=156 Identities=21% Similarity=0.157 Sum_probs=105.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|++....... ...|.......+.+++..+.+|||||........
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------- 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLW------------- 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGG-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECCEEEEEEECCCCHHHHHHH-------------
Confidence 4689999999999999999999987522211 2234445556677788899999999976533221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhc---CCCeEEEEecccCCC
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNY---MDKFIILAVNKCESP 316 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~---~~~p~ilV~NK~Dl~ 316 (484)
...+..+|++++|+|+..+.+... ..+...+.... .+.|+++|+||+|+.
T Consensus 85 -------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 139 (190)
T 2h57_A 85 -------------------------EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR 139 (190)
T ss_dssp -------------------------GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred -------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence 134578999999999876422221 22222232211 378999999999997
Q ss_pred chhhhh-hHHHH------hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIMQ-VSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~-~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... ..... ..+++++++||++|.|++++++++.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 140 DAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 642211 11122 124578999999999999999999887643
No 35
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.73 E-value=9.9e-19 Score=179.40 Aligned_cols=161 Identities=29% Similarity=0.399 Sum_probs=113.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|++|+|||||+|+|++.+...+...+++|.+.....+.+++.++.+|||||+.......+.+
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~----------- 292 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI----------- 292 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC-------------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH-----------
Confidence 468999999999999999999998767788889999988888888899999999999986532211110
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ 322 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~ 322 (484)
| .+.+...+..+|++++|+|+..+....+..+...+ ..+|+++|+||+|+.......
T Consensus 293 --g-----------------i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl~~~~~~~ 349 (462)
T 3geh_A 293 --G-----------------VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDLVEKQLIT 349 (462)
T ss_dssp -------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTSSCGGGST
T ss_pred --H-----------------HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCCCcchhhH
Confidence 0 12334556789999999999887766554444443 357999999999998654332
Q ss_pred hHHHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 323 VSEFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 323 ~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.........+++++||++|.|+++|++.+.+.+..
T Consensus 350 ~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 350 SLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11111234578999999999999999999887753
No 36
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=1.5e-17 Score=148.76 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|+|||||+|+|++.........+..+.......+.+.+. .+.+|||||.......
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------ 76 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV------------ 76 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH------------
Confidence 35799999999999999999999876432233344444444444455554 6899999997643322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
....+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 77 --------------------------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 77 --------------------------THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp ----------------------------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred --------------------------HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 22445789999999998765333221 2333333322 4789999999999975
Q ss_pred hhhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... .... ....+++++++||++|.|++++++++.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 131 ERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3211 1111 22346789999999999999999999887653
No 37
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.73 E-value=2e-17 Score=148.68 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=104.1
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|||||||+|+|++........+.+.+. ..+.+++..+.+|||||.........
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 83 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNV----EEIVINNTRFLMWDIGGQESLRSSWN----------- 83 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSC----EEEEETTEEEEEEEESSSGGGTCGGG-----------
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceee----EEEEECCEEEEEEECCCCHhHHHHHH-----------
Confidence 346899999999999999999999887644555555432 34556788999999999865443221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 84 ---------------------------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 84 ---------------------------TYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp ---------------------------GGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 345788999999998876443322 122222221 25789999999999976
Q ss_pred hhhhh-hHHHH------hcCCCceeeecccCCCCchhhHHHHH
Q 011511 318 KGIMQ-VSEFW------SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 318 ~~~~~-~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
..... ..... ..+++++++||++|.|++++++++.+
T Consensus 137 ~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 137 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHT
T ss_pred CCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHh
Confidence 32111 11111 12447899999999999999998865
No 38
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.2e-17 Score=148.10 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+++..+.+|||||+.......
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------- 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSW------------- 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSC----SSCEEEEETTEEEEEEECCC----CGGG-------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCc----cceEEEEECCEEEEEEECCCCHhHHHHH-------------
Confidence 36799999999999999999999776443333333 2234456678899999999986533221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~ 318 (484)
...+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 78 -------------------------~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 78 -------------------------NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp -------------------------HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred -------------------------HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence 2456789999999998876433222 122222221 257899999999999763
Q ss_pred hhhh-hHHHH------hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQ-VSEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~-~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... ..... ..+++++++||++|.|++++++++.+.+..
T Consensus 133 ~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 133 MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 2111 11111 234578999999999999999999887654
No 39
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.73 E-value=9.6e-18 Score=148.05 Aligned_cols=153 Identities=20% Similarity=0.133 Sum_probs=90.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.+||+++|.+|||||||+|+|.+.........++.+.. ....+.+ ..+.+|||||...+....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~D~~g~~~~~~~~------------ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVDGEEASLMVYDIWEQDGGRWLP------------ 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEE---EEEEETTEEEEEEEEECC---------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceE---EEEEECCEEEEEEEEECCCCccchhhh------------
Confidence 57999999999999999999998765555555555543 2233444 357899999986543222
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
...+..+|++++|+|...+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 67 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 120 (166)
T 3q72_A 67 --------------------------GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120 (166)
T ss_dssp --------------------------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCS
T ss_pred --------------------------hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEecccccc
Confidence 2445789999999998764322211 122223222 24789999999999975
Q ss_pred hhhhhh----HHHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQV----SEFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~~----~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...... ......+.+++++||++|.|++++++.+.+.+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp SCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHH
Confidence 322111 112335678999999999999999999988764
No 40
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.73 E-value=1.5e-17 Score=162.04 Aligned_cols=162 Identities=33% Similarity=0.507 Sum_probs=118.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccc-cccCCCchhhhhhhhhhhc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVL-NVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~-~~~~~~~~~~~~~~~~~~~ 241 (484)
..+|+|+|++|||||||+|+|+|.....++..+++|.....+.+..++..+.++||||+. .... .+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~---~l---------- 74 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR---AI---------- 74 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH---HH----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh---hH----------
Confidence 458999999999999999999998877777788888887777777888899999999986 2110 00
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc-h-h
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR-K-G 319 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~-~-~ 319 (484)
...+...+..++..+|++++|+|+.. +...+..+.+.+... +.|+++|+||+|+.. . .
T Consensus 75 -----------------~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~--~~P~ilvlNK~D~~~~~~~ 134 (301)
T 1ega_A 75 -----------------NRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREG--KAPVILAVNKVDNVQEKAD 134 (301)
T ss_dssp -----------------HHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSS--SSCEEEEEESTTTCCCHHH
T ss_pred -----------------HHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhc--CCCEEEEEECcccCccHHH
Confidence 00111222345678999999999876 666665565555543 799999999999986 2 2
Q ss_pred hhhhHH-HHh-cCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 320 IMQVSE-FWS-LGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 320 ~~~~~~-~~~-~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... +.. .++ .++++||+++.|++++++.+...++.
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 222222 222 344 58899999999999999999887653
No 41
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=1.6e-17 Score=146.31 Aligned_cols=149 Identities=20% Similarity=0.234 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+++|.+|||||||+|+|++..... ..+ |.......+.+.+..+.+|||||+....
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~--~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~~------------------ 58 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT--TIP--TIGFNVETVEYKNISFTVWDVGGQDKIR------------------ 58 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC--CCC--CSSCCEEEEECSSCEEEEEECCCCGGGH------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc--ccC--cCceeEEEEEECCEEEEEEEcCCChhhH------------------
Confidence 489999999999999999998765322 222 3334445566778889999999985421
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-----hcCCCeEEEEecccCCCch
Q 011511 244 EGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK-----NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+... ...++.. ...+.|+++|+||+|+...
T Consensus 59 --------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 59 --------------------PLWRHYFQNTQGLIFVVDSNDRERVNE--AREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp --------------------HHHHHHTTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred --------------------HHHHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 223356788999999999876532221 2222222 1247899999999999764
Q ss_pred hhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... .... ..+++++++||++|.|++++++.+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 22111 1111 12346899999999999999999987664
No 42
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.72 E-value=2.3e-17 Score=148.72 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=105.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....+|+++|.+|||||||+|+|++.......+ |.......+.+++..+.+|||||+........
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~----------- 80 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISP----TLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR----------- 80 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCC----CSSEEEEEEEETTEEEEEEEECCSHHHHTTGG-----------
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccc----cCccceEEEEECCEEEEEEECCCCHhHHHHHH-----------
Confidence 346899999999999999999999875211112 33344455667788999999999865433221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 81 ---------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (186)
T 1ksh_A 81 ---------------------------NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 133 (186)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred ---------------------------HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCC
Confidence 345789999999998765433221 122222221 24789999999999976
Q ss_pred hhhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... .... ..+++++++||++|.|++++++.+.+.+.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 134 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp CCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 422211 1111 234578999999999999999999887653
No 43
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.72 E-value=1.4e-17 Score=147.40 Aligned_cols=154 Identities=19% Similarity=0.209 Sum_probs=103.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.++|+++|.+|+|||||+|+|++.... ...+..+.+.... ...+.+ ..+.+|||||+......
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dt~G~~~~~~~------------ 71 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK--TVQYQNELHKFLIWDTAGLERFRAL------------ 71 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE--EEEETTEEEEEEEEEECCSGGGGGG------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEE--EEEECCeEEEEEEEcCCCchhhhcc------------
Confidence 479999999999999999999987531 1223333333222 233333 56899999998643221
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh-cCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
....+..+|++++|+|+..+.+... ..++..+... ....|+++|+||+|+..
T Consensus 72 --------------------------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1z0j_A 72 --------------------------APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125 (170)
T ss_dssp --------------------------THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGG
T ss_pred --------------------------cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcccc
Confidence 2245678999999999876533322 1233334433 35788999999999976
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ....+ ...+++++++||++|.|++++++.+.+.+.
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 3221 11112 235678999999999999999999987653
No 44
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.72 E-value=1.3e-17 Score=154.99 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=112.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHh-CCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLV-GGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...++|+++|.+|||||||+|+++ +........+.+++...........+..+.+|||||...+.....
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 82 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRD---------- 82 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCH----------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHH----------
Confidence 346799999999999999999954 433345566777776665544433445789999999866544332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+...
T Consensus 83 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 83 ----------------------------GYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp ----------------------------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred ----------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 455789999999998765333322 233444444458899999999998764
Q ss_pred hhhhh-H-HHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQV-S-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~~-~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... . .....+++++++||++|.|+++++.++.+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp SSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 32221 1 123346789999999999999999999887653
No 45
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.72 E-value=2.2e-17 Score=164.63 Aligned_cols=166 Identities=25% Similarity=0.258 Sum_probs=107.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+|+|++|||||||+|+|++.. ..+.+.+++|.+...+.+.+++..+.++||||+... ....+.+.
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~-~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~--lp~~lve~------ 247 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLT-QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG--IPPQIVDA------ 247 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEETTEEEEEEECCCBCSS--CCGGGHHH------
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCC-ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc--CCHHHHHH------
Confidence 345669999999999999999999876 356678888998888899999999999999998542 11111111
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH---HHHHHHHhh-cCCCeEEEEecccCCC
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE---EIADWLRKN-YMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~---~~~~~l~~~-~~~~p~ilV~NK~Dl~ 316 (484)
+ +.+...+..+|++++|+|++.+...... .+...+... ..+.|+++|+||+|+.
T Consensus 248 ---------------------f-~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~ 305 (364)
T 2qtf_A 248 ---------------------F-FVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKI 305 (364)
T ss_dssp ---------------------H-HHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGC
T ss_pred ---------------------H-HHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCC
Confidence 1 2344567889999999998765311111 123334332 2478999999999987
Q ss_pred chhhhh---hH----HHH-hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIMQ---VS----EFW-SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~---~~----~~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... .. ... ..+.+++++||+++.|+++|++.|.+.+..
T Consensus 306 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 306 NGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp CSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 643211 11 111 112357899999999999999999887653
No 46
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=2.9e-17 Score=145.00 Aligned_cols=154 Identities=14% Similarity=0.094 Sum_probs=104.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||........
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~------------ 71 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAIT------------ 71 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCC------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHH------------
Confidence 579999999999999999999976432 12222223333444445544 368999999976544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchh
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
...+..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+....
T Consensus 72 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~ 125 (168)
T 1z2a_A 72 --------------------------KAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDS 125 (168)
T ss_dssp --------------------------HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGC
T ss_pred --------------------------HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCccc
Confidence 1456789999999998764322221 2333333333588999999999987532
Q ss_pred hh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 320 IM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. .... ....+++++++||++|.|++++++++.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 126 CIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp SSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 21 1111 223567899999999999999999998765
No 47
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.72 E-value=2.3e-17 Score=149.97 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=108.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++... ...+.+++.........+.+.. +.+|||||...+.....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 89 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEI--PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRP---------- 89 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGG----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCC--CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhH----------
Confidence 367999999999999999999998752 2333333333334445555544 59999999766543332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
.++..+|++++|+|+..+.+... ..+...+.....+.|+++|+||+|+..
T Consensus 90 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 90 ----------------------------LSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRK 141 (194)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCC
T ss_pred ----------------------------hhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 34577899999999876543333 234455555556799999999999875
Q ss_pred hhh-----hhhHH-HHhcCCC-ceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGI-----MQVSE-FWSLGFS-PLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~-----~~~~~-~~~~~~~-~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ..... ....+++ ++++||++|.|++++++.+.+.+..
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 142 DGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp TTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred CCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence 311 11111 2234666 8999999999999999999887643
No 48
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.72 E-value=2.3e-17 Score=158.49 Aligned_cols=158 Identities=30% Similarity=0.374 Sum_probs=115.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|++|||||||+|+|+|... .++..+++|.....+.+.+.+..+.+|||||+..+...... +
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~--~--------- 70 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID--E--------- 70 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH--H---------
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH--H---------
Confidence 57899999999999999999999864 77889999999988888899999999999999865432210 0
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHH--hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC-CeEEEEecccCCCchh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD-KFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~--~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~-~p~ilV~NK~Dl~~~~ 319 (484)
.....+ ...+|++++|+|+..+ .....+...+... + .|+++|+||+|+....
T Consensus 71 ---------------------~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 71 ---------------------LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEM--EVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT--TCCSEEEEEECHHHHHHH
T ss_pred ---------------------HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhc--CCCCEEEEEEChhcCccc
Confidence 111122 2579999999998753 1222222333333 5 9999999999976532
Q ss_pred hhh--hH-HHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 320 IMQ--VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 320 ~~~--~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .. -....+++++++||++|.|+.++++.+...+..
T Consensus 126 ~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 126 GAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp TCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 111 11 122357899999999999999999999887643
No 49
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=150.84 Aligned_cols=157 Identities=14% Similarity=0.075 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++.. ....+.+++.......+.+++. .+.+|||||...+.....
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~--------- 86 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRP--------- 86 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGG---------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhH---------
Confidence 347899999999999999999999865 2334445554444455566664 467999999876544332
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..+..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+.
T Consensus 87 -----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 137 (201)
T 2q3h_A 87 -----------------------------LCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLR 137 (201)
T ss_dssp -----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGG
T ss_pred -----------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhh
Confidence 235778999999998765433332 2444455544689999999999987
Q ss_pred chhh---------------hhhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~---------------~~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... .....+ ...++ +++++||++|.|++++++.+.+.+..
T Consensus 138 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp GCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 5210 011111 12355 78999999999999999999877643
No 50
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=1.1e-17 Score=152.89 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|++|||||||+++|.+.......++.+. ....+.+++..+.+|||||+........
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------------- 87 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTTFDLGGHIQARRVWK------------- 87 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC------CCCCC----SCEEEEETTEEEEEEEECC----CCGGG-------------
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCc----eeEEEEECCEEEEEEECCCcHhhHHHHH-------------
Confidence 56899999999999999999998764333333332 3456677888999999999875443222
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCCchh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.++..+|++++|+|+..+.+.... .++..+.. ...+.|+++|+||+|+....
T Consensus 88 -------------------------~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 142 (198)
T 1f6b_A 88 -------------------------NYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI 142 (198)
T ss_dssp -------------------------GGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC
T ss_pred -------------------------HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccC
Confidence 345689999999998765332211 12222221 12478999999999997521
Q ss_pred hhh-hHHHHh------------------cCCCceeeecccCCCCchhhHHHHHHh
Q 011511 320 IMQ-VSEFWS------------------LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 320 ~~~-~~~~~~------------------~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... ...+.. .+.+++++||++|.|++++++++.+.+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 143 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred CHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 111 111211 234689999999999999999987643
No 51
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.72 E-value=1.7e-17 Score=151.04 Aligned_cols=159 Identities=17% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
....++|+|+|.+|||||||+++|++.....+... .|.......+...+..+.+|||||+..+.....
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 81 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT--ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWE---------- 81 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCC--CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGG----------
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc--cccceeEEEEEeCCEEEEEEECCCCHhHHHHHH----------
Confidence 34578999999999999999999998764332111 122334444567778899999999865433221
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhh-c-------CCCeEEEE
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKN-Y-------MDKFIILA 309 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~-~-------~~~p~ilV 309 (484)
.++..+|++|+|+|+..+.+.... ++..++... . .+.|+++|
T Consensus 82 ----------------------------~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv 133 (199)
T 4bas_A 82 ----------------------------TYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFF 133 (199)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEE
T ss_pred ----------------------------HHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEE
Confidence 345789999999998765432221 222222210 0 27899999
Q ss_pred ecccCCCchhhh----hhHHH----HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 310 VNKCESPRKGIM----QVSEF----WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 310 ~NK~Dl~~~~~~----~~~~~----~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+||+|+...... ..... ...+++++++||++|.|++++++.|.+.+.+.
T Consensus 134 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 134 ANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp EECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 999999765211 11111 22455789999999999999999998877543
No 52
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=2.9e-17 Score=146.57 Aligned_cols=155 Identities=19% Similarity=0.187 Sum_probs=104.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||.......
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~------------- 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSL------------- 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGG-------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHH-------------
Confidence 479999999999999999999976432 22234444445555556655 36899999997543322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh-hcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++++|+|+..+.+.... .++..+.. ...+.|+++|+||+|+...
T Consensus 80 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 80 -------------------------IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp -------------------------SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred -------------------------HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 12456789999999998764322221 22222222 2247899999999998753
Q ss_pred hhhh---hH-HHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIMQ---VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~---~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... .. .....+++++++||++|.|++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 2211 11 12335678999999999999999999987654
No 53
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.72 E-value=4.4e-17 Score=147.07 Aligned_cols=159 Identities=29% Similarity=0.392 Sum_probs=112.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|++|||||||+|+|++.. ......+++|.....+.+.+.+..+.+|||||+..+..... .+
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--~~--------- 74 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSI--DE--------- 74 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSH--HH---------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccH--HH---------
Confidence 5799999999999999999999865 45677788888888888888889999999999876432210 00
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.....++ ..+|++++|+|.... .....+...+.. .+.|+++|+||+|+.....
T Consensus 75 ---------------------~~~~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 75 ---------------------IIARDYIINEKPDLVVNIVDATAL--ERNLYLTLQLME--MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp ---------------------HHHHHHHHHHCCSEEEEEEEGGGH--HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhccCCCEEEEEecchhH--HHHHHHHHHHHh--cCCCEEEEEEhhhcccccc
Confidence 0111222 358999999997631 111223333333 3789999999999865321
Q ss_pred h--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 321 ~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
. ....+ ...+.+++++||+++.|++++++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 1 11122 23467899999999999999999998877543
No 54
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.72 E-value=3e-17 Score=162.04 Aligned_cols=164 Identities=24% Similarity=0.295 Sum_probs=117.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
.++|+|+|.+|||||||+|+|++.. ..+.+++++|.....+.+.+.+ ..+.+|||||+.........+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l---------- 226 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGL---------- 226 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTT----------
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchh----------
Confidence 5789999999999999999999865 3557788899888888888775 789999999986533222111
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC---CCcccH-HHHHHHHhh---cCCCeEEEEecccC
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG---LTAADE-EIADWLRKN---YMDKFIILAVNKCE 314 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~---~~~~~~-~~~~~l~~~---~~~~p~ilV~NK~D 314 (484)
...++..+..++++|+|+|++.. ....+. .+...+... ..++|+++|+||+|
T Consensus 227 ---------------------~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D 285 (342)
T 1lnz_A 227 ---------------------GHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD 285 (342)
T ss_dssp ---------------------HHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred ---------------------HHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence 13345567789999999998652 222211 233444443 24789999999999
Q ss_pred CCchhhh-hh-HHHHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 315 SPRKGIM-QV-SEFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 315 l~~~~~~-~~-~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+...... .. ........+++++||+++.|+++|+..|.+.+.+.
T Consensus 286 l~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 286 MPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp STTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence 9864321 11 11112226789999999999999999999887644
No 55
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.72 E-value=2.6e-17 Score=148.05 Aligned_cols=153 Identities=16% Similarity=0.249 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+++|.+.......++.+.+ ...+.+++..+.+|||||.....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~----~~~~~~~~~~l~i~Dt~G~~~~~---------------- 74 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFN----IKSVQSQGFKLNVWDIGGQRKIR---------------- 74 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEE----EEEEEETTEEEEEEECSSCGGGH----------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeE----EEEEEECCEEEEEEECCCCHHHH----------------
Confidence 4689999999999999999999987654444444432 33456678889999999975421
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHh-hcCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
.....++..+|++++|+|+..+.+.... ++...+.. ...+.|+++|+||+|+...
T Consensus 75 ----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 75 ----------------------PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp ----------------------HHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred ----------------------HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 2233567889999999998764332221 11222221 1247899999999999764
Q ss_pred hhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... .... ..+++++++||++|.|++++++++.+.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 133 APASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred CCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 22111 1111 12346899999999999999999987654
No 56
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.72 E-value=1.3e-17 Score=147.50 Aligned_cols=154 Identities=18% Similarity=0.151 Sum_probs=100.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.++|+++|.+|+|||||+|+|++..... .....+.+.. .....+. +..+.+|||||......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~G~~~~~~------------- 70 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFL--TQTVCLDDTTVKFEIWDTAGQERYHS------------- 70 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEE--EEEEEETTEEEEEEEEEECCSGGGGG-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE--EEEEEECCEEEEEEEEeCCCcHHhhh-------------
Confidence 4689999999999999999999764321 1122232222 2223333 34689999999764321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh-hcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ilV~NK~Dl~~ 317 (484)
.....+..+|++++|+|+..+.+.... .++..+.. ...+.|+++|+||+|+..
T Consensus 71 -------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~ 125 (170)
T 1r2q_A 71 -------------------------LAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125 (170)
T ss_dssp -------------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred -------------------------hhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 123556789999999998764322211 12222322 235789999999999865
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ....+ ...+++++++||++|.|+++++++|.+.+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 126 KRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3221 11122 235678899999999999999999987653
No 57
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.72 E-value=1.4e-17 Score=159.51 Aligned_cols=156 Identities=23% Similarity=0.341 Sum_probs=111.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|||||||+|+|+|.. ..+++++|+|.....+.+.. +..+.+|||||+..+...... +
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~--e--------- 69 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPE--A--------- 69 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHH--H---------
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChH--H---------
Confidence 4689999999999999999999875 45778889988877776655 778999999999765432210 0
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
.....++ ..+|++++|+|++.. .....+...+.+ .+.|+++|+||+|+.....
T Consensus 70 ---------------------~v~~~~~~~~~~d~vi~V~D~t~~--e~~~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 70 ---------------------KVARDYLLSQRADSILNVVDATNL--ERNLYLTTQLIE--TGIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp ---------------------HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHH--TCSCEEEEEECHHHHHHTT
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEecCCch--HhHHHHHHHHHh--cCCCEEEEEEChhhCCcCC
Confidence 1112233 359999999998652 112223333444 3899999999999865321
Q ss_pred h--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 321 M--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
. ....+ ...+++++++||++|.|++++++.+.+.+.
T Consensus 125 ~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 125 KKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp CCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred cHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 1 11111 234779999999999999999999987653
No 58
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=2.7e-17 Score=147.69 Aligned_cols=152 Identities=21% Similarity=0.221 Sum_probs=102.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|++.......++.+ .....+.+.+..+.+|||||+........
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------ 80 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIG----FNVETLSYKNLKLNVWDLGGQTSIRPYWR------------ 80 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTT----CCEEEEEETTEEEEEEEEC----CCTTGG------------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCc----cceEEEEECCEEEEEEECCCCHhHHHHHH------------
Confidence 46899999999999999999999776433333333 33345566788899999999976443322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh-----cCCCeEEEEecccCCC
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN-----YMDKFIILAVNKCESP 316 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~-----~~~~p~ilV~NK~Dl~ 316 (484)
..+..+|++++|+|+..+.+... ...++... ..+.|+++|+||+|+.
T Consensus 81 --------------------------~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 132 (183)
T 1moz_A 81 --------------------------CYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQP 132 (183)
T ss_dssp --------------------------GTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTST
T ss_pred --------------------------HHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCC
Confidence 33567999999999876643322 22222221 2578999999999987
Q ss_pred chhhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... .... ..+++++++||++|.|++++++++.+.+.+
T Consensus 133 ~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 133 GALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 6422111 1111 123468999999999999999999887653
No 59
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=4e-17 Score=148.36 Aligned_cols=152 Identities=22% Similarity=0.233 Sum_probs=101.4
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
....+|+++|.+|||||||+++|++.......+ |.......+.+.+..+.+|||||.......
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVEYKNICFTVWDVGGQDKIRPL------------- 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEE----ETTEEEEEEEETTEEEEEEECC-----CTT-------------
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCC----cCceeEEEEEECCEEEEEEECCCCHhHHHH-------------
Confidence 456899999999999999999998775432222 333444556677888999999998654322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-----hcCCCeEEEEecccCC
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK-----NYMDKFIILAVNKCES 315 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl 315 (484)
....+..+|++++|+|+..+.+... ...++.. ...+.|+++|+||+|+
T Consensus 90 -------------------------~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl 142 (192)
T 2b6h_A 90 -------------------------WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDM 142 (192)
T ss_dssp -------------------------HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTS
T ss_pred -------------------------HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCC
Confidence 2245678999999999876533221 2222222 1247899999999999
Q ss_pred Cchhhhhh-HHHH------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 316 PRKGIMQV-SEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 316 ~~~~~~~~-~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
........ .... ..+++++++||++|.|++++++++.+.+.
T Consensus 143 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 143 PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 76422111 1111 12346899999999999999999987664
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.7e-17 Score=148.51 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=103.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|+|||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+.
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------------- 89 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDDTFC-EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN-------------- 89 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCC-cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHH--------------
Confidence 4679999999999999999999987532 22223333344444555555 468999999975321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++|+|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 90 ------------------------~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~ 145 (192)
T 2il1_A 90 ------------------------SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 145 (192)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred ------------------------HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 2334567889999999998765433332 2233343332 3789999999999875
Q ss_pred hhhh---hhHHHHh--cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~~~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ....+.. .+++++++||++|.|++++++.+.+.+.
T Consensus 146 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 146 DREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp GCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3221 1122222 2567899999999999999999987664
No 61
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.71 E-value=4.1e-17 Score=144.44 Aligned_cols=156 Identities=18% Similarity=0.132 Sum_probs=97.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++....... .+..+.......+.+.+. .+.+|||||.......
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------------- 67 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH-EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------------- 67 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEEEEEEEECCCCC-------------------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc-cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh-------------
Confidence 468999999999999999999876532222 233344455555556553 5789999998653321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
.....+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 68 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (169)
T 3q85_A 68 ------------------------LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 123 (169)
T ss_dssp --------------------------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGG
T ss_pred ------------------------hhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhh
Confidence 011345679999999998764322221 2222233322 2789999999999875
Q ss_pred hhhhh---hH-HHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQ---VS-EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~---~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... .. .....+++++++||++|.|++++++.+.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 124 SREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 32211 11 12345678899999999999999999988764
No 62
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=146.70 Aligned_cols=157 Identities=19% Similarity=0.176 Sum_probs=98.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|.+.........++.+. ....+.+++. .+.+|||||...... .
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~--~----------- 68 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK--S----------- 68 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC---------C-----------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch--h-----------
Confidence 5799999999999999999999886544444445443 2334455554 578999999864210 0
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 69 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~ 125 (175)
T 2nzj_A 69 -----------------------WSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLAR 125 (175)
T ss_dssp -----------------------HHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTT
T ss_pred -----------------------hhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcc
Confidence 1122445678999999998754332221 222333332 23789999999999975
Q ss_pred hhhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ... ....+++++++||++|.|++++++.+.+.+..
T Consensus 126 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 126 CREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 32211 111 22346789999999999999999999887653
No 63
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.71 E-value=4.5e-17 Score=143.57 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++... .....+++.......+.+.+. .+.+|||||.....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------------- 66 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA--------------- 66 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH---------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH---------------
Confidence 47899999999999999999997652 233334444444444455553 68999999975321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
.....++..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 67 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 123 (168)
T 1u8z_A 67 -----------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123 (168)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccc
Confidence 2233556789999999998754322211 2222333322 3789999999999875
Q ss_pred hhhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... .... ....+++++++||++|.|++++++++.+.+.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 3221 1111 2234678999999999999999999987653
No 64
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.71 E-value=3.9e-17 Score=148.17 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=102.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
..+|+++|.+|||||||+++|.+.......+ |.......+.+++..+.+|||||+........
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------------- 85 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQP----TWHPTSEELAIGNIKFTTFDLGGHIQARRLWK------------- 85 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCC----CCSCEEEEEEETTEEEEEEECCCSGGGTTSGG-------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcccc----CCCCCeEEEEECCEEEEEEECCCCHHHHHHHH-------------
Confidence 5699999999999999999999875432222 33334566778888999999999876543322
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCCCchh
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl~~~~ 319 (484)
.++..+|++++|+|+..+.+.... ..+..+.. ...+.|+++|+||+|+....
T Consensus 86 -------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~ 140 (190)
T 1m2o_B 86 -------------------------DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV 140 (190)
T ss_dssp -------------------------GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC
T ss_pred -------------------------HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCC
Confidence 334678999999998765433221 12222222 12578999999999997522
Q ss_pred hhh-hHHHHh-------------cCCCceeeecccCCCCchhhHHHHHH
Q 011511 320 IMQ-VSEFWS-------------LGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 320 ~~~-~~~~~~-------------~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
... ...... .+.+++++||++|.|++++++++.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 141 SEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred CHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 111 111111 23468999999999999999988653
No 65
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=4.4e-17 Score=144.15 Aligned_cols=156 Identities=17% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||.........
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~----------- 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITT----------- 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCH-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHH-----------
Confidence 468999999999999999999976532 22233334444444555555 3589999999865443321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 71 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1g16_A 71 ---------------------------AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123 (170)
T ss_dssp ---------------------------HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC
T ss_pred ---------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcC
Confidence 456789999999998764332221 2333333322 47899999999999542
Q ss_pred hhh--hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM--QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~--~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .... ....+++++++||++|.|+++++..+.+.+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp CSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 211 1111 22346789999999999999999999887653
No 66
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.71 E-value=2.6e-17 Score=148.83 Aligned_cols=154 Identities=20% Similarity=0.248 Sum_probs=105.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|.+.......+ |.......+.+.+..+.+|||||+........
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~------------ 84 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP----TVGVNLETLQYKNISFEVWDLGGQTGVRPYWR------------ 84 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEECS----STTCCEEEEEETTEEEEEEEECCSSSSCCCCS------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcCC----CCceEEEEEEECCEEEEEEECCCCHhHHHHHH------------
Confidence 46899999999999999999998765433222 22334445667788999999999876544332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+...
T Consensus 85 --------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 85 --------------------------CYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp --------------------------SSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred --------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 234678999999998876433221 122222211 247899999999999764
Q ss_pred hhhhh-HHH------HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQV-SEF------WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~~-~~~------~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ... ...+++++++||++|.|++++++.+.+.+.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 139 ASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHh
Confidence 22111 111 1123468999999999999999999887753
No 67
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=2.5e-17 Score=149.55 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=104.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..++|+++|.+|+|||||+|+|++.... ....+.+.+..............+.+|||||.......
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSL------------- 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGG-------------
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhh-------------
Confidence 3579999999999999999999977532 23334444433332222223456899999997643322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 89 -------------------------~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~ 143 (192)
T 2fg5_A 89 -------------------------APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143 (192)
T ss_dssp -------------------------THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -------------------------hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 12456789999999998765332221 2233333322 37899999999999753
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ....+ ...+++++++||++|.|++++++.+.+.+.+
T Consensus 144 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp CCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 211 11222 2346788999999999999999999887643
No 68
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=2.3e-17 Score=148.35 Aligned_cols=155 Identities=16% Similarity=0.103 Sum_probs=105.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+++|++... ...+..++.........+.+. .+.+|||||+..+.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 71 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRP----------- 71 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHH-----------
Confidence 57999999999999999999997542 223333333333344455554 466999999876543322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 72 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 72 ---------------------------LSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred ---------------------------HhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 335779999999998765333332 244455554458999999999998653
Q ss_pred hhh---------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ....+ ...+. +++++||++|.|+++++..+.+.+..
T Consensus 125 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 125 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred chhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 210 01111 22354 78999999999999999999887643
No 69
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=4.4e-17 Score=143.67 Aligned_cols=153 Identities=19% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|||||||+|+|.+... ...+..++.........+.+ ..+.+|||||......
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------------- 66 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------------- 66 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHH--------------
Confidence 46899999999999999999997642 22233333333333344443 3588999999764322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
.....+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 67 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1c1y_A 67 ------------------------MRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122 (167)
T ss_dssp ------------------------HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGG
T ss_pred ------------------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccc
Confidence 122456779999999998764322221 222333332 24789999999999975
Q ss_pred hhhh---hhHHHH-hc-CCCceeeecccCCCCchhhHHHHHHh
Q 011511 318 KGIM---QVSEFW-SL-GFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~---~~~~~~-~~-~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ....+. .. +.+++++||++|.|++++++++.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp GCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 4221 112222 22 56899999999999999999998765
No 70
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=3.5e-17 Score=148.64 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=106.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+++|++... ...+.+++.......+.+++ ..+.+|||||...+.....
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---------- 84 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRP---------- 84 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSC--CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHH----------
Confidence 357999999999999999999997642 23334444444444555655 4688999999876543322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
.++..+|++++|+|+..+.+.... .++..+.....+.|+++|+||+|+..
T Consensus 85 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 85 ----------------------------LSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred ----------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 345779999999998765333222 34445555556899999999999975
Q ss_pred hhh------------h---hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011511 318 KGI------------M---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~------------~---~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... . ....+ ...++ +++++||++|.|++++++.+.+.+
T Consensus 137 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 321 0 11111 22355 789999999999999999987754
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.70 E-value=2.3e-17 Score=151.45 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++... .....+++.......+.+++.. +.+|||||...+.....
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------- 96 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP--------- 96 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGG---------
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHH---------
Confidence 3468999999999999999999996542 3344455555555555666655 45999999876543322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+.
T Consensus 97 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 147 (204)
T 4gzl_A 97 -----------------------------LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
T ss_dssp -----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHH
T ss_pred -----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhc
Confidence 345789999999998765443332 3444555554689999999999986
Q ss_pred chhhh---------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHH
Q 011511 317 RKGIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 317 ~~~~~---------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
..... ....+ ...+. +++++||++|.|++++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp TCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred cchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHH
Confidence 53210 01111 12343 58999999999999999998764
No 72
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.70 E-value=1.9e-17 Score=152.65 Aligned_cols=158 Identities=15% Similarity=0.098 Sum_probs=107.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|+|||||+++|.+... ...+.+++.......+.+++. .+.+|||||+..+.....
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 75 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRP---------- 75 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCC--CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--C----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHH----------
Confidence 457999999999999999999997642 233333333343444455553 689999999876544332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
.++..+|++|+|+|+..+.+.... .++..+.....+.|+++|+||+|+..
T Consensus 76 ----------------------------~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 127 (212)
T 2j0v_A 76 ----------------------------LSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127 (212)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhh
Confidence 345789999999998764333222 24444555445899999999999865
Q ss_pred hhh-----------hhhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhhcc
Q 011511 318 KGI-----------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 318 ~~~-----------~~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
... .....+ ...+. +++++||++|.|++++++.+.+.+....
T Consensus 128 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC-
T ss_pred CccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhh
Confidence 321 111111 23454 7899999999999999999988775443
No 73
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=6.8e-17 Score=147.38 Aligned_cols=155 Identities=17% Similarity=0.160 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-------------------------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE------------------------------- 210 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------------------- 210 (484)
..++|+++|.+|+|||||+|+|++.... ....+..........+.+.+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 4689999999999999999999987532 11122222223333333333
Q ss_pred --------ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeC
Q 011511 211 --------HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDG 282 (484)
Q Consensus 211 --------~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~ 282 (484)
..+.+|||||...+... ....+..+|++++|+|+
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~--------------------------------------~~~~~~~~d~~i~v~D~ 126 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASI--------------------------------------VPLYYRGATCAIVVFDI 126 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTT--------------------------------------HHHHHTTCSEEEEEEET
T ss_pred cccCccceeEEEEEECCCcHHHHHH--------------------------------------HHHHhcCCCEEEEEEEC
Confidence 57899999997653321 22556789999999998
Q ss_pred CCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhh--hhhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 283 QAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 283 ~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+.+.... .++..+... .+.|+++|+||+|+..... ..... ....+++++++||++|.|++++++++.+.+.
T Consensus 127 ~~~~s~~~~~~~~~~i~~~-~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 127 SNSNTLDRAKTWVNQLKIS-SNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp TCHHHHHHHHHHHHHHHHH-SCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhh-CCCcEEEEEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHH
Confidence 765333221 222333332 3589999999999422111 11122 2235678999999999999999999987764
No 74
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.70 E-value=5e-17 Score=145.36 Aligned_cols=157 Identities=16% Similarity=0.119 Sum_probs=106.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++.. ......+++.........+++. .+.+|||||........
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~----------- 74 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMR----------- 74 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCH-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHH-----------
Confidence 46799999999999999999999864 2334445544444455566653 67899999976543221
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHH-Hhh-cCCCeEEEEecccCCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWL-RKN-YMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l-~~~-~~~~p~ilV~NK~Dl~ 316 (484)
...+..+|++++|+|+..+.+.... .++..+ ... ..+.|+++|+||+|+.
T Consensus 75 ---------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (181)
T 2fn4_A 75 ---------------------------EQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127 (181)
T ss_dssp ---------------------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred ---------------------------HHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2455789999999998764322211 122222 221 2478999999999987
Q ss_pred chhhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... .... ....+++++++||++|.|++++++++.+.+.+.
T Consensus 128 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 63221 1111 223467899999999999999999998877543
No 75
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.70 E-value=5.6e-17 Score=146.72 Aligned_cols=154 Identities=18% Similarity=0.119 Sum_probs=102.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+++|.+|||||||+|+|++.... .. ...|.......+...+..+.+|||||...+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------------- 82 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN--ED-MIPTVGFNMRKITKGNVTIKLWDIGGQPRFRS--------------- 82 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC--CS-CCCCCSEEEEEEEETTEEEEEEEECCSHHHHT---------------
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC--Cc-cCCCCceeEEEEEeCCEEEEEEECCCCHhHHH---------------
Confidence 3679999999999999999999976532 11 11233333344566788899999999764322
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHh-hcCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
....++..+|++++|+|+..+..... ..+...+.. ...+.|+++|+||+|+...
T Consensus 83 -----------------------~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 83 -----------------------MWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp -----------------------THHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred -----------------------HHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 12245688999999999876433221 112222221 1257899999999999754
Q ss_pred hhh-hhHHHH------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIM-QVSEFW------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~-~~~~~~------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ...... ..+++++++||++|.|++++++++.+.+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 140 LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 211 111111 12346789999999999999999987664
No 76
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=4.3e-17 Score=144.10 Aligned_cols=154 Identities=19% Similarity=0.201 Sum_probs=101.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|+|||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~-------------- 67 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-------------- 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG--------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhh--------------
Confidence 368999999999999999999976532 11122222223333444444 3689999999754321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
.....+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 68 ------------------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 68 ------------------------LAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp ------------------------GHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred ------------------------hhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 123556889999999998764332221 122223322 247899999999998753
Q ss_pred h---hh--h-hHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 319 G---IM--Q-VSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~---~~--~-~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
. .. . ... ....+++++++||++|.|++++++++.+.+
T Consensus 124 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 124 GGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp SCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 1 11 1 111 223467899999999999999999987755
No 77
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=6.8e-17 Score=145.62 Aligned_cols=156 Identities=19% Similarity=0.222 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++... .....+++.........+.+.. +.+|||||........
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~------------ 69 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMR------------ 69 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTH------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHH------------
Confidence 57899999999999999999997652 3444555555555556666655 6789999976543322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
..++..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+..
T Consensus 70 --------------------------~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 70 --------------------------DQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp --------------------------HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred --------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 2456779999999998764322221 122223322 24789999999999975
Q ss_pred hhhhh--hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGIMQ--VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~~~--~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... ... ....+++++++||++|.|+++++.++.+.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH 167 (189)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 32211 111 223467899999999999999999998877543
No 78
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.70 E-value=4.1e-17 Score=150.99 Aligned_cols=156 Identities=19% Similarity=0.192 Sum_probs=101.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+|+|.+|||||||+++++.... .....+....+.........+. .+.+|||+|...+...
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f-~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l------------- 78 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSF-DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSL------------- 78 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCC-C----------CEEEEEECSSCEEEEEEECCSCTTTCGGG-------------
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCC-CCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhH-------------
Confidence 57999999999999999999986542 1111222222333334445553 5789999998764432
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh-hcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
...++..++++++|+|...+.+.... .++..+.. ...+.|++||+||+|+...
T Consensus 79 -------------------------~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 79 -------------------------IPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp -------------------------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred -------------------------HHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 22566889999999998765433332 22333332 3357899999999998764
Q ss_pred hhhhh---HH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQV---SE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~~---~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... .. ....+++++++||++|.|+++++..|.+.+..
T Consensus 134 r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp CCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred CcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 32211 11 23456788999999999999999999887653
No 79
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.70 E-value=4.1e-17 Score=147.65 Aligned_cols=156 Identities=15% Similarity=0.212 Sum_probs=103.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
..++|+++|.+|+|||||+|+|++..... .....+.+ .....+...+ ..+.+|||||...+.....
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------- 89 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTVYRHDKRIKLQIWDTAGQERYRTITT--------- 89 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCE--EEEEEEEETTEEEEEEEEECCSCCSSCCSGG---------
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEE--EEEEEEEECCeEEEEEEEeCCCcHHHhhhHH---------
Confidence 35799999999999999999999765321 11222222 2222333333 4689999999865443322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~ 316 (484)
..+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+.
T Consensus 90 -----------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 140 (189)
T 2gf9_A 90 -----------------------------AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140 (189)
T ss_dssp -----------------------------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred -----------------------------HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence 345789999999998764332222 2333343322 478999999999997
Q ss_pred chhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ....+ ...+++++++||++|.|++++++++.+.+.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 141 DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 64221 11122 2346789999999999999999999887643
No 80
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.70 E-value=6.8e-17 Score=144.68 Aligned_cols=156 Identities=17% Similarity=0.158 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++..... ...+..........+.+.+ ..+.+|||||.......
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 77 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVE-FQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSL------------- 77 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTT-TSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGG-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCC-cCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhh-------------
Confidence 5799999999999999999999765321 1122222222333344443 46899999997643322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++++|+|+..+.+... ..++..+... ..+.|+++|+||+|+...
T Consensus 78 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 78 -------------------------APMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp -------------------------THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred -------------------------hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 1245678999999999876433221 1233333332 247899999999999653
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ....+ ...+++++++||++|.|+++++.++.+.+.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 133 RKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 221 11222 2356789999999999999999999887654
No 81
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.70 E-value=7.3e-17 Score=144.00 Aligned_cols=154 Identities=17% Similarity=0.108 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCC-ceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPG-VTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~-~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.++|+++|.+|+|||||+|+|++.... ..... .........+.+.+ ..+.+|||||.....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 78 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFM--ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------------- 78 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC--------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh--------------
Confidence 579999999999999999999976532 21222 12222233334444 468999999975422
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 79 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 134 (179)
T 1z0f_A 79 ------------------------AVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEA 134 (179)
T ss_dssp ------------------------HHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ------------------------hhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 2334567889999999998765333222 2223333322 4789999999999965
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ....+ ...+++++++||++|.|++++++.+.+.+.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 135 QRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp GCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 3221 11222 335678999999999999999999887653
No 82
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.70 E-value=7.5e-17 Score=145.00 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=106.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|+|||||+|+|++... ...+.+++.......+.+.+. .+.+|||||.....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 80 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------------- 80 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCC--CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH--------------
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCC--CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH--------------
Confidence 357999999999999999999997652 333444444444444555553 68999999975321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~ 316 (484)
.....++..+|++++|+|+..+...... .++..+.... .+.|+++|+||+|+.
T Consensus 81 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 136 (187)
T 2a9k_A 81 ------------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 136 (187)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred ------------------------HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 2233566789999999998754322111 1222233322 278999999999987
Q ss_pred chhhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... .... ....+++++++||+++.|+++++.++.+.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 137 DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 53221 1112 23456789999999999999999999887643
No 83
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=8.1e-17 Score=144.65 Aligned_cols=156 Identities=14% Similarity=0.072 Sum_probs=104.4
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|+|||||+|+|++... ......++.........+.+.. +.+|||||...+....
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---------- 83 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIF--VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMR---------- 83 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSH----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHH----------
Confidence 3467999999999999999999997642 2233333333334455565554 5669999976543322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHh--hcCCCeEEEEecccCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRK--NYMDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~--~~~~~p~ilV~NK~Dl 315 (484)
..++..+|++++|+|+..+.+.... .+...+.. ...+.|+++|+||+|+
T Consensus 84 ----------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 135 (183)
T 3kkq_A 84 ----------------------------EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135 (183)
T ss_dssp ----------------------------HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTC
T ss_pred ----------------------------HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCc
Confidence 2456789999999998765332221 22222322 1247899999999998
Q ss_pred Cchhhhh---hHH-HHhcCCCceeeecc-cCCCCchhhHHHHHHhh
Q 011511 316 PRKGIMQ---VSE-FWSLGFSPLPISAI-SGTGTGELLDLVCSELK 356 (484)
Q Consensus 316 ~~~~~~~---~~~-~~~~~~~~i~vSa~-~g~gi~~L~~~i~~~l~ 356 (484)
....... ... ....+++++++||+ ++.|+++++..+.+.+.
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 136 MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp STTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred hhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence 7532211 111 22346789999999 99999999999987664
No 84
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.70 E-value=9.2e-17 Score=145.62 Aligned_cols=157 Identities=16% Similarity=0.104 Sum_probs=104.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++..... ...+..+.......+.+++ ..+.+|||||...+.....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 88 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQP-VHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR---------- 88 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH----------
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHH----------
Confidence 46799999999999999999999765322 1222223333334455555 3689999999876443322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+..
T Consensus 89 ----------------------------~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 89 ----------------------------SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLES 140 (191)
T ss_dssp ----------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ----------------------------HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCC
Confidence 456789999999998764332221 223333332 24789999999999975
Q ss_pred hhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... ....+ ...+++++++||++|.|+++++..+.+.+.+
T Consensus 141 ~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 141 RRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYR 184 (191)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3221 11112 2346789999999999999999999877643
No 85
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=146.71 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=107.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+|+|++... ...+.+++.......+.+.+. .+.+|||||...+.
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------- 76 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA------------- 76 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------------
Confidence 3467999999999999999999997652 333444444444455556554 68999999975421
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl 315 (484)
.....++..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+
T Consensus 77 -------------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 131 (206)
T 2bov_A 77 -------------------------AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131 (206)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTC
T ss_pred -------------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCc
Confidence 2233556789999999998754322111 2223333332 37899999999999
Q ss_pred Cchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 316 PRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... ....+ ...+++++++||++|.|+++++.++.+.+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 132 EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp GGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 763221 11112 2346789999999999999999999887654
No 86
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=1e-16 Score=145.08 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=104.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeee-EEEEEeCC-----------ceeeEeeccccccccCCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRM-YGRSFWGE-----------HEFMLVDTGGVLNVSKSQP 229 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~i~liDtpG~~~~~~~~~ 229 (484)
..++|+++|.+|+|||||+|+|++.... ....+....... ...+.+.+ ..+.+|||||+..+.
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~---- 84 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFN-SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFR---- 84 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGH----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCC-cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHH----
Confidence 3579999999999999999999976431 111222222222 22334443 378999999985321
Q ss_pred hhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeE
Q 011511 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFI 306 (484)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ 306 (484)
......+..+|++++|+|+..+.+.... .++..+.... .+.|+
T Consensus 85 ----------------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi 130 (195)
T 3bc1_A 85 ----------------------------------SLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI 130 (195)
T ss_dssp ----------------------------------HHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCE
T ss_pred ----------------------------------HHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 2334567889999999998765433332 2333333322 47899
Q ss_pred EEEecccCCCchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 307 ILAVNKCESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 307 ilV~NK~Dl~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
++|+||+|+...... ....+ ...+++++++||++|.|++++++.|.+.+.+
T Consensus 131 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 131 VLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp EEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999753221 11112 2346789999999999999999999887653
No 87
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.70 E-value=9.4e-17 Score=147.31 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=107.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|.+.... ....+..+.......+.+.+. .+.+|||||...+.....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITS----------- 75 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHH-----------
Confidence 579999999999999999999986532 222333344444445556553 689999999876544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
.++..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 76 ---------------------------SYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128 (206)
T ss_dssp ---------------------------GGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred ---------------------------HhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 345778999999998764332221 122333332 246899999999999763
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... ....+ ...+++++++||++|.|+++++..+.+.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp CCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 221 11122 24567899999999999999999998877544
No 88
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=7e-17 Score=147.69 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.... ....+..+.......+.+++ ..+.+|||||...+....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------------ 91 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFK-QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVT------------ 91 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCC------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHH------------
Confidence 579999999999999999999976532 22223333334444455555 578999999986544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
...+..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 92 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 92 --------------------------RSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp --------------------------HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred --------------------------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 1456789999999998764332222 122223222 247899999999998653
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .... ....+++++++||++|.|+++++..+.+.+..
T Consensus 146 ~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 188 (200)
T 2o52_A 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILN 188 (200)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 221 1112 23456789999999999999999999877643
No 89
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.69 E-value=6.5e-17 Score=142.39 Aligned_cols=154 Identities=19% Similarity=0.120 Sum_probs=102.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|++|+|||||+|+|++.... ....+++.........+.+.. +.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~--------------- 65 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------------- 65 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH---------------
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 468999999999999999999976432 223333333334445555543 8899999975321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|.+++|+|+..+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 66 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 122 (167)
T 1kao_A 66 -----------------------SMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122 (167)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGG
T ss_pred -----------------------HHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccc
Confidence 1223456789999999998754322211 1222222221 4789999999999865
Q ss_pred hhhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... ... ....+++++++||++|.|++++++.+.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp GCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence 32211 111 2234678999999999999999999987654
No 90
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.69 E-value=8.1e-17 Score=147.65 Aligned_cols=157 Identities=15% Similarity=0.128 Sum_probs=106.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|+|||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||.........
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~---------- 75 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGV---------- 75 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCC----------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHH----------
Confidence 3579999999999999999999987532 22223333444444555555 4689999999866544332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-----CCCeEEEEeccc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKC 313 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ilV~NK~ 313 (484)
..+..+|++|+|+|+..+.+.... .++..+.... .+.|+++|+||+
T Consensus 76 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 127 (207)
T 1vg8_A 76 ----------------------------AFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKI 127 (207)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECT
T ss_pred ----------------------------HHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 335678999999998765332222 1222222221 368999999999
Q ss_pred CCCchhh--hhhHHHH--hcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 314 ESPRKGI--MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 314 Dl~~~~~--~~~~~~~--~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
|+..... .....+. ..+++++++||++|.|++++++++.+.+.+
T Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 128 DLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp TSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 9974321 1112222 346689999999999999999999887654
No 91
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.69 E-value=5.5e-17 Score=150.09 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+++|++... ...+.+++.......+.+.+. .+.+|||||...+....
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~------------ 99 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAF--PESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR------------ 99 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHH------------
Confidence 57999999999999999999997653 222333333333344455554 58999999976533221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
...+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 100 --------------------------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 100 --------------------------PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------------------------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred --------------------------HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 2446789999999998764333222 234444444457899999999998764
Q ss_pred hhh---------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... +...+ ...++ +++++||++|.|+++++..+.+.+.+
T Consensus 154 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~ 209 (214)
T 2j1l_A 154 KSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALS 209 (214)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred chhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 211 01112 23455 78999999999999999999887643
No 92
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.69 E-value=4.2e-17 Score=145.63 Aligned_cols=157 Identities=16% Similarity=0.094 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC---ceeeEeeccccccccCCCchhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
..++|+++|.+|||||||+|+|++.... ....+....+.....+.+.+ ..+.+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~----------- 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG-KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM----------- 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT-HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC-CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch-----------
Confidence 3579999999999999999999976532 11112222334445556655 57999999997653322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc---CCCe-EEEEeccc
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY---MDKF-IILAVNKC 313 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~---~~~p-~ilV~NK~ 313 (484)
....+..+|++++|+|+..+.+.... .++..+.... .+.| +++|+||+
T Consensus 73 ---------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~ 125 (178)
T 2hxs_A 73 ---------------------------LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125 (178)
T ss_dssp ---------------------------HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECG
T ss_pred ---------------------------hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcc
Confidence 22456789999999998765433222 2223333311 2455 78999999
Q ss_pred CCCchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 314 ESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 314 Dl~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
|+...... ....+ ...+++++++||++|.|+++++.++.+.+.+
T Consensus 126 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp GGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred ccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 98753211 11122 2346789999999999999999999887654
No 93
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.69 E-value=4.6e-17 Score=144.15 Aligned_cols=155 Identities=18% Similarity=0.165 Sum_probs=99.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+++. .+.+|||||.........
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 73 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGP----------- 73 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------C-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHH-----------
Confidence 579999999999999999999976421 122233333333344555554 578999999765332221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 74 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 74 ---------------------------IYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp ---------------------------CSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred ---------------------------HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 234678999999998764322211 1222233221 37899999999998763
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ....+ ...+++++++||++|.|++++++++.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence 221 11122 234678899999999999999999987653
No 94
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.69 E-value=4e-16 Score=155.79 Aligned_cols=167 Identities=24% Similarity=0.358 Sum_probs=117.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
...++|+++|.+|||||||+|+|++.. ..+...+++|.......+...+..+.+|||||+...........
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~-------- 235 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEI-------- 235 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHH--------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHH--------
Confidence 357899999999999999999999876 45667788888877777777778899999999865322111000
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC--Cccc-HHHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--TAAD-EEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~--~~~~-~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
..+........+|.+++|+|+..+. .... ..++..+.....+.|+++|+||+|+..
T Consensus 236 ---------------------~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 236 ---------------------EKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp ---------------------HHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred ---------------------HHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 0011222334689999999986543 2221 234444444334899999999999986
Q ss_pred hhhhh-hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIMQ-VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~-~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ...+ ...+.+++++||++|.|++++++.+.+.+..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 295 EENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 43321 1122 2356789999999999999999999887754
No 95
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.69 E-value=2.5e-17 Score=148.02 Aligned_cols=156 Identities=14% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+++|++... .....+..+.......+.+++ ..+.+|||||...+.....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 75 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITT----------- 75 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHH-----------
Confidence 57999999999999999999997642 122223333344444555666 5689999999865433222
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 76 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 76 ---------------------------AYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128 (183)
T ss_dssp ---------------------------TTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred ---------------------------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence 345779999999998764332211 122333332 246899999999999753
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ....+ ...+++++++||++|.|+++++..+.+.+..
T Consensus 129 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKA 171 (183)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 11122 2346789999999999999999999877653
No 96
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=146.49 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=103.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++.... ....+..........+.+++ ..+.+|||||...+.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------------- 92 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFR-------------- 92 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEETTEEEEEEEECCTTCGGGH--------------
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHH--------------
Confidence 3679999999999999999999876532 11122222334344555655 478999999975421
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
.....++..+|++|+|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 93 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 93 ------------------------TITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSE 148 (201)
T ss_dssp ------------------------HHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred ------------------------HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCcccc
Confidence 2234567889999999998764332221 2333333322 4789999999999975
Q ss_pred hhhh---hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIM---QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~---~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.... ....+ ...++ +++++||++|.|+++++.++.+.+.+
T Consensus 149 ~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 149 LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp GCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3211 11222 23566 78999999999999999999887654
No 97
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.69 E-value=4.3e-17 Score=154.31 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=112.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecC-CCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..++|+|+|.+|||||||+|+|+|......... .++|..+......+.+..+.+|||||+....... .
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~-------- 88 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSK---T-------- 88 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHH---H--------
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCc---H--------
Confidence 468999999999999999999999875544333 3578888888888999999999999996432111 0
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc----CCCeEEEEecccCCC
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY----MDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~----~~~p~ilV~NK~Dl~ 316 (484)
.++...+.+.+......+|++|+|+|+.. ++..+..+++++.+.+ .+.|+++|.||+|+.
T Consensus 89 ---------------~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~ 152 (247)
T 3lxw_A 89 ---------------DPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLA 152 (247)
T ss_dssp ---------------STTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGT
T ss_pred ---------------HHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcC
Confidence 11112222333344588999999999864 5566666667766643 267999999999986
Q ss_pred chhhhhh---------HHH-HhcCCCceeeeccc-----CCCCchhhHHHHHHhhhcc
Q 011511 317 RKGIMQV---------SEF-WSLGFSPLPISAIS-----GTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 317 ~~~~~~~---------~~~-~~~~~~~i~vSa~~-----g~gi~~L~~~i~~~l~~~~ 359 (484)
....... ..+ ...+..++.+++.. +.|+.+|++.+.+++.+..
T Consensus 153 ~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 153 GGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp TCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 5322111 111 12344444444333 6899999999998887543
No 98
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=1.1e-16 Score=148.30 Aligned_cols=157 Identities=15% Similarity=0.145 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeC-C--ceeeEeeccccccccCCCchhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWG-E--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~-~--~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
..++|+++|.+|||||||+|+|++.... ....+.+.+..... .... + ..+.+|||||.........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------- 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVT--FLDDQGNVIKFNVWDTAGQEKKAVLKD-------- 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEE--EEBTTSCEEEEEEEEECSGGGTSCCCH--------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEE--EEeCCCcEEEEEEEecCCchhhchHHH--------
Confidence 3679999999999999999999976532 22233333222221 2222 2 4589999999876544332
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCES 315 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl 315 (484)
..+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+
T Consensus 80 ------------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 129 (218)
T 4djt_A 80 ------------------------------VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDI 129 (218)
T ss_dssp ------------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTC
T ss_pred ------------------------------HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence 445779999999998765433332 2223333322 35899999999999
Q ss_pred Cchhhhhh--H-HH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 316 PRKGIMQV--S-EF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 316 ~~~~~~~~--~-~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
........ . .+ ...+++++++||++|.|+++++..+.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 176 (218)
T 4djt_A 130 KNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGR 176 (218)
T ss_dssp C----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred ccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 76422111 1 12 23456899999999999999999998877543
No 99
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.68 E-value=5.3e-17 Score=150.24 Aligned_cols=157 Identities=16% Similarity=0.049 Sum_probs=105.5
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++... ...+..+........+.+.+ ..+.+|||||...+.....
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------- 93 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP--------- 93 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCC--CSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGG---------
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCC--CCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHH---------
Confidence 3478999999999999999999997653 22222222222233333433 4689999999876544332
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
.++..+|++|+|+|+..+.+... ..++..+.....+.|+++|+||+|+.
T Consensus 94 -----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 144 (214)
T 3q3j_B 94 -----------------------------LCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144 (214)
T ss_dssp -----------------------------GGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGG
T ss_pred -----------------------------HHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence 34577999999999886544333 23445555555689999999999986
Q ss_pred chh-------------h--hhhHH-HHhcCC-CceeeecccCCC-CchhhHHHHHHhhh
Q 011511 317 RKG-------------I--MQVSE-FWSLGF-SPLPISAISGTG-TGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~-------------~--~~~~~-~~~~~~-~~i~vSa~~g~g-i~~L~~~i~~~l~~ 357 (484)
... . ..... ....++ +++++||++|.| +++++..+.+.+..
T Consensus 145 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 145 TDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLN 203 (214)
T ss_dssp GCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence 520 1 01111 223466 789999999998 99999999887643
No 100
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.68 E-value=1.4e-16 Score=144.02 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++... .....+++.......+.+.+. .+.+|||||.......
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------------- 85 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAM------------- 85 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC--------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHH-------------
Confidence 57999999999999999999997642 233344444444445555554 4889999997643221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
....+..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|+..
T Consensus 86 -------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 86 -------------------------RDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp -----------------------------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred -------------------------HHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 22456789999999998764332221 1222333322 3789999999999875
Q ss_pred hhh--hhhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGI--MQVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~--~~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... .....+ ...+++++++||++|.|++++++++.+.+.+.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 321 111122 23467899999999999999999998877543
No 101
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.68 E-value=1.2e-16 Score=143.86 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=105.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.... ....+..+.......+.+.+ ..+.+|||||.....
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~--------------- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR--------------- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHH---------------
Confidence 579999999999999999999976532 22233334444444555655 468999999975421
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 74 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 74 -----------------------SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp -----------------------HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 2233456789999999998764333222 122223322 247899999999998653
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .... ....+++++++||++|.|+++++..+.+.+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILN 173 (186)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 221 1111 23456789999999999999999999877653
No 102
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.68 E-value=1.1e-16 Score=146.31 Aligned_cols=155 Identities=15% Similarity=0.221 Sum_probs=102.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
.++|+++|.+|||||||+|+|++..... .....+.+ .....+.+.+ ..+.+|||||+..+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 71 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGID--FKVKTIYRNDKRIKLQIWDTAGLERYR-------------- 71 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGGH--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEEECCeEEEEEEEECCCchhhc--------------
Confidence 5799999999999999999999875321 11222222 2222333443 468999999985421
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|++|+|+|+..+...... .++..+.... .+.|+++|+||+|+..
T Consensus 72 ------------------------~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 72 ------------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp ------------------------HHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred ------------------------chHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 2233556789999999998764322211 2223333322 4789999999999976
Q ss_pred hhhhh---hHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 318 KGIMQ---VSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 318 ~~~~~---~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... ...+ ...+++++++||++|.|+++++.++.+.+.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 128 ERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp SCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 32211 1111 2346789999999999999999999877643
No 103
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.68 E-value=6.2e-17 Score=147.80 Aligned_cols=156 Identities=19% Similarity=0.147 Sum_probs=98.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
...++|+++|.+|||||||+|+|++.... ....+.+.+ .....+.+++ ..+.+|||||...+.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------ 91 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIVDGERTVLQLWDTAGQERFR------------ 91 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEETTEEEEEEEEECTTCTTCH------------
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEECCEEEEEEEEECCCCcchh------------
Confidence 34689999999999999999999976532 122222322 2223344444 458999999975321
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCES 315 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl 315 (484)
......+..+|++|+|+|+..+.+.... .++..+.... .+.|+++|+||+|+
T Consensus 92 --------------------------~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl 145 (199)
T 2p5s_A 92 --------------------------SIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI 145 (199)
T ss_dssp --------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred --------------------------hhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence 2334567889999999998765433322 2233333321 36899999999998
Q ss_pred Cchh-------h-hh-hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 316 PRKG-------I-MQ-VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 316 ~~~~-------~-~~-~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... . .. ... ....+++++++||++|.|+++++..+.+.+.
T Consensus 146 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 146 RDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 6321 1 01 111 1234678899999999999999999987664
No 104
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.68 E-value=9.8e-17 Score=145.56 Aligned_cols=155 Identities=17% Similarity=0.155 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC--CceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++....... .+............+. ...+.+|||||+......
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~------------- 90 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDS-RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI------------- 90 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSC-CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-------------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC-CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-------------
Confidence 579999999999999999999987533211 1111122222223333 346899999998653322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 91 -------------------------~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 91 -------------------------TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp -------------------------HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred -------------------------hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 22556789999999998764332221 222333332 147899999999999753
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
... ....+ ...+++++++||++|.|+++++..+.+.+.
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 211 11122 245678999999999999999999987664
No 105
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.68 E-value=1.1e-16 Score=142.80 Aligned_cols=155 Identities=14% Similarity=0.088 Sum_probs=102.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... ....+..+.......+.+++. .+.+|||||.....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR--------------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhh---------------
Confidence 579999999999999999999976532 222233333343445556553 68999999975421
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-----CCCeEEEEecccC
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNKCE 314 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ilV~NK~D 314 (484)
......+..+|++++|+|+..+.+.... .+...+.... .+.|+++|+||+|
T Consensus 71 -----------------------~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~D 127 (177)
T 1wms_A 71 -----------------------SLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127 (177)
T ss_dssp -----------------------HHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTT
T ss_pred -----------------------hhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCc
Confidence 1222456779999999998765433222 2223332221 4689999999999
Q ss_pred CCchhh--hhhHHHH--hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 315 SPRKGI--MQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 315 l~~~~~--~~~~~~~--~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+..... .....+. ..+.+++++||++|.|++++++.+.+.+.
T Consensus 128 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp CSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 874221 1122222 34568999999999999999999987664
No 106
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.68 E-value=5.1e-18 Score=179.63 Aligned_cols=157 Identities=24% Similarity=0.251 Sum_probs=87.5
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceee------------------------------ecCCCceeeeeEEEEEeC
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWG 209 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~ 209 (484)
....++|+++|++|+|||||+|+|++...... ...+|+|.......+.+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 44578999999999999999999974321111 113467777777777777
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC---
Q 011511 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL--- 286 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~--- 286 (484)
+..+.+|||||+.++..... ..+..+|++|+|+|+..+.
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~--------------------------------------~~~~~aD~alLVVDa~~g~~e~ 295 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMI--------------------------------------AGASSADFAVLVVDSSQNNFER 295 (592)
T ss_dssp -----CCEEESSSEEEEECC--------------------------------------C-------CCSEEEEEECCSST
T ss_pred CeEEEEEECCChHHHHHHHH--------------------------------------HHHhhCCEEEEEEECCCCcccc
Confidence 88999999999976543221 3346789999999998753
Q ss_pred ----CcccHHHHHHHHhhcCCCe-EEEEecccCCCc--hhhh-----hhHHHH--hcCC-----CceeeecccCCCCc--
Q 011511 287 ----TAADEEIADWLRKNYMDKF-IILAVNKCESPR--KGIM-----QVSEFW--SLGF-----SPLPISAISGTGTG-- 345 (484)
Q Consensus 287 ----~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~--~~~~-----~~~~~~--~~~~-----~~i~vSa~~g~gi~-- 345 (484)
..+..+++..+... +.| +++|+||+|+.. .... ....+. ..++ +++++||++|.|+.
T Consensus 296 gi~~~~qt~e~l~~~~~l--gip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~ 373 (592)
T 3mca_A 296 GFLENGQTREHAYLLRAL--GISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQK 373 (592)
T ss_dssp TSCSCSSHHHHHHHHHHS--SCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSC
T ss_pred ccccchHHHHHHHHHHHc--CCCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccc
Confidence 45555666555554 665 899999999875 2111 111222 2233 68999999999998
Q ss_pred ------------hhhHHHHHHhh
Q 011511 346 ------------ELLDLVCSELK 356 (484)
Q Consensus 346 ------------~L~~~i~~~l~ 356 (484)
.|++.|...++
T Consensus 374 ~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 374 DSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp CCCGGGGTCCSCCHHHHHHTSCC
T ss_pred cccccccccchHHHHHHHHhhcc
Confidence 67777766543
No 107
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.68 E-value=8.5e-17 Score=147.18 Aligned_cols=153 Identities=16% Similarity=0.128 Sum_probs=102.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+++|.+.... ..+..++.......+.+.+. .+.+|||||...+.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------- 91 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFP--EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC--SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGG-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC--cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHH-----------
Confidence 579999999999999999999976532 12222222222233455553 689999999865443322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+... ..+...+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 92 ---------------------------LSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred ---------------------------HhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 24577899999999876433222 2344455555468999999999998764
Q ss_pred hhh---------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011511 319 GIM---------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~---------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... ....+ ...+. +++++||++|.|+++++..+.+.+
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 145 EHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 210 01111 22345 689999999999999999988764
No 108
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=145.04 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=105.8
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++.... ....++++.+.....+.+++. .+.+|||+|......
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~------------ 87 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGG------------ 87 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGH------------
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchh------------
Confidence 34689999999999999999999865322 233445555555555666664 467899999854210
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc--CCCeEEEEecccCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY--MDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~--~~~p~ilV~NK~Dl 315 (484)
.....++..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+
T Consensus 88 -------------------------~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 142 (195)
T 3cbq_A 88 -------------------------WLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL 142 (195)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTC
T ss_pred -------------------------hhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhc
Confidence 0112345789999999998764332221 2222333322 37899999999999
Q ss_pred Cchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 316 PRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
...... ....+ ...+++++++||++|.|++++++.+.+.+..
T Consensus 143 ~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 143 ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred cccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 753221 11122 2346688999999999999999999887653
No 109
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.68 E-value=2.2e-17 Score=148.00 Aligned_cols=154 Identities=16% Similarity=0.107 Sum_probs=96.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|+|||||++++.+... ...+.+++.......+.+.+ ..+.+|||||...+.....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 74 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTF--PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRP---------- 74 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCC--C----------CBCCCC-------CEEECCCC-CTTTTTGG----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCC--CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHH----------
Confidence 468999999999999999999997642 12222222211111122223 3467999999865443322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+..
T Consensus 75 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 126 (182)
T 3bwd_D 75 ----------------------------LSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126 (182)
T ss_dssp ----------------------------GGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHT
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhc
Confidence 345778999999998764333222 24445555445799999999999865
Q ss_pred hhhh-------------hhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011511 318 KGIM-------------QVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~-------------~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ....+ ...+. +++++||++|.|++++++.+.+.+
T Consensus 127 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp CHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3221 11112 22454 789999999999999999987764
No 110
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=2e-16 Score=144.10 Aligned_cols=161 Identities=14% Similarity=0.063 Sum_probs=101.2
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEE-eCCceeeEeeccccccccCCCchhhhhhhh
Q 011511 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
+....+||+++|.+|||||||++++.+............+.......+. .....+.+|||||...+......
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~------- 88 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD------- 88 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC-------
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh-------
Confidence 3445889999999999999999999986322211111222222221111 23357999999998654332200
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHh---hcCCCeEEEEecccC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRK---NYMDKFIILAVNKCE 314 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~---~~~~~p~ilV~NK~D 314 (484)
...++..+|++|+|+|+..+.......+..++.. ...+.|+++|+||+|
T Consensus 89 ----------------------------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 140 (196)
T 3llu_A 89 ----------------------------YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVD 140 (196)
T ss_dssp ----------------------------HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred ----------------------------cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccc
Confidence 0245678999999999887632333344455544 245899999999999
Q ss_pred CCchhhh----hh------HHHH-----hcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 315 SPRKGIM----QV------SEFW-----SLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 315 l~~~~~~----~~------~~~~-----~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
+...... +. ..+. ..+.+++++||++ .|+++++..+.+.+
T Consensus 141 l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 141 GLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred cCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 8763211 10 1111 2345789999999 99999999887643
No 111
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=5.3e-17 Score=147.19 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=104.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+||+++|.+|||||||+|+|++.... ....+.+.+..............+.+|||||...+.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--------------- 86 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYR--------------- 86 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCH---------------
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHH---------------
Confidence 4789999999999999999999976421 111222322222222222244568999999965321
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc-CCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
......+..+|++++|+|+..+.+... ..++..+.... .+.|+++|+||+|+...
T Consensus 87 -----------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 87 -----------------------TITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp -----------------------HHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred -----------------------HHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 233466788999999999876432222 12333343322 47899999999998654
Q ss_pred hhhhh---H-HHHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIMQV---S-EFWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~~~---~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..... . .....+++++++||++|.|++++++.+.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp CCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 22111 1 123346789999999999999999999887653
No 112
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.68 E-value=1.3e-16 Score=144.23 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=101.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++..... ...+..+.......+.+++ ..+.+|||||...+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------------- 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRK------------- 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHT-------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhh-------------
Confidence 46799999999999999999999765321 1222233333444455555 4689999999754321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~ 316 (484)
.....++..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+.
T Consensus 85 ------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 140 (189)
T 1z06_A 85 ------------------------SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140 (189)
T ss_dssp ------------------------TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred ------------------------hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 1122456789999999998764332221 223333333 2478999999999996
Q ss_pred chhhh---hhHHH-HhcCCCceeeecccC---CCCchhhHHHHHHh
Q 011511 317 RKGIM---QVSEF-WSLGFSPLPISAISG---TGTGELLDLVCSEL 355 (484)
Q Consensus 317 ~~~~~---~~~~~-~~~~~~~i~vSa~~g---~gi~~L~~~i~~~l 355 (484)
..... ....+ ...+++++++||+++ .|+.+++..+.+.+
T Consensus 141 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred ccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 54211 11122 235678999999999 88888888876554
No 113
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=5.6e-17 Score=148.33 Aligned_cols=160 Identities=19% Similarity=0.105 Sum_probs=103.2
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe--CCceeeEeeccccccccCCCchhhhhhhh
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW--GEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
....++|+++|.+|||||||+|+|++.... ..+..++.........+ ....+.+|||||...+.....
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------- 90 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPY-------- 90 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCG--------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHH--------
Confidence 345789999999999999999999987532 22223333222333333 335679999999876544332
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCE 314 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~D 314 (484)
.++..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|
T Consensus 91 ------------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 140 (201)
T 3oes_A 91 ------------------------------SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140 (201)
T ss_dssp ------------------------------GGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTT
T ss_pred ------------------------------HHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 345778999999998754322211 122222221 13679999999999
Q ss_pred CCchhhhhh---H-HHHhcCCCceeeecccCCCCchhhHHHHHHhhhcc
Q 011511 315 SPRKGIMQV---S-EFWSLGFSPLPISAISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 315 l~~~~~~~~---~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~ 359 (484)
+........ . .....+++++++||++|.|+++++..+.+.+.+..
T Consensus 141 l~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp CGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred CccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 875432211 1 12335678999999999999999999988776443
No 114
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.8e-16 Score=145.27 Aligned_cols=156 Identities=16% Similarity=0.114 Sum_probs=104.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.... ....+..+.+.....+.+++. .+.+|||||...+.
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~--------------- 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFR--------------- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGH---------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHH---------------
Confidence 579999999999999999999876421 222233333444445556653 68999999975421
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~~ 318 (484)
.....++..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+...
T Consensus 90 -----------------------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 90 -----------------------SITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp -----------------------HHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred -----------------------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 1223456789999999998764332221 2333333322 36899999999998753
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .... ....+++++++||++|.|+++++..+.+.+..
T Consensus 147 ~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 1111 22356789999999999999999999877653
No 115
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=2e-16 Score=154.00 Aligned_cols=144 Identities=22% Similarity=0.200 Sum_probs=95.4
Q ss_pred HHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCchhhh----hhHHHHhcCCCceeeecccC
Q 011511 268 AAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKGIM----QVSEFWSLGFSPLPISAISG 341 (484)
Q Consensus 268 ~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~i~vSa~~g 341 (484)
.++.++|++|+|+|++.+..... ..++..+.. .+.|+++|+||+|+...... .....+...++++++||++|
T Consensus 80 ~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 80 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred cccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCC
Confidence 34688999999999987653221 122222333 48999999999999764321 11111111178899999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceee
Q 011511 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEF 414 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~ 414 (484)
.|+++++..+. +..++++|+||+|||||+|+|+|.....++.+.. +|+.... .
T Consensus 158 ~gv~~lf~~l~------------------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~--~ 217 (301)
T 1u0l_A 158 MGIEELKEYLK------------------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--L 217 (301)
T ss_dssp TTHHHHHHHHS------------------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--E
T ss_pred cCHHHHHHHhc------------------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEE--E
Confidence 99999988763 2478999999999999999999987666655442 4443322 2
Q ss_pred ecCCCCcEEEEEcCCCccCcc
Q 011511 415 TGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 415 ~~~~g~~i~liDTPG~~~~~~ 435 (484)
... ....|+||||++....
T Consensus 218 ~~~--~~g~v~q~p~~~~~~~ 236 (301)
T 1u0l_A 218 KFD--FGGYVVDTPGFANLEI 236 (301)
T ss_dssp ECT--TSCEEESSCSSTTCCC
T ss_pred EcC--CCCEEEECcCCCccCC
Confidence 211 2348999999876653
No 116
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=3.5e-16 Score=150.41 Aligned_cols=166 Identities=16% Similarity=0.134 Sum_probs=94.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeec-------CCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVD-------EPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIME 233 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~-------~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~ 233 (484)
.++|+++|.+|+|||||+|+|++........ .++.+.......+..++. .+.+|||||+.........+
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~-- 85 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW-- 85 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT--
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH--
Confidence 5789999999999999999999876443322 222333333333344443 78999999996543322111
Q ss_pred hhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhh-------------cCeEEEEeeCCC-CCCcccHHHHHHHHh
Q 011511 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDGQA-GLTAADEEIADWLRK 299 (484)
Q Consensus 234 ~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~d~vilVvD~~~-~~~~~~~~~~~~l~~ 299 (484)
..+.+++..++..++.. +|+++++++... +....+..+.+.+..
T Consensus 86 ----------------------~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~ 143 (274)
T 3t5d_A 86 ----------------------QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE 143 (274)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc
Confidence 11112222333333333 678888886543 566666666666654
Q ss_pred hcCCCeEEEEecccCCCchhhhhh-----H-HHHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 300 NYMDKFIILAVNKCESPRKGIMQV-----S-EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 300 ~~~~~p~ilV~NK~Dl~~~~~~~~-----~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
+.|+++|+||+|+........ . .+...+++++++||.++.|+.++++.+.+.+
T Consensus 144 ---~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 144 ---KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp ---TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred ---cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 799999999999876432211 1 1234577889999999999999999987755
No 117
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-16 Score=141.79 Aligned_cols=154 Identities=19% Similarity=0.158 Sum_probs=99.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||+|+|++.... .....+............+ ..+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~--------------- 65 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFR--ESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP--------------- 65 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCC--SSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC--CCCCCCccccEEEEEEECCEEEEEEEEECCCchhhH---------------
Confidence 468999999999999999999986432 1111111111122233333 358999999975421
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh---cCCCeEEEEecccCCC
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCESP 316 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~Dl~ 316 (484)
......+..+|++++|+|+..+..... ..+...+.+. ..+.|+++|+||+|+.
T Consensus 66 -----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~ 122 (172)
T 2erx_A 66 -----------------------AMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122 (172)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred -----------------------HHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence 223355678999999999876432221 2233333332 1478999999999987
Q ss_pred chhhhh---hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 317 RKGIMQ---VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 317 ~~~~~~---~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...... ... ....+++++++||++|.|++++++++.+.+.
T Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 542211 111 2234678899999999999999999988664
No 118
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=1.1e-16 Score=147.03 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=101.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|||||||+|+|++.... ..+.+++.......+.+.+ ..+.+|||||.........
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRP----------- 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGG-----------
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHH-----------
Confidence 469999999999999999999986532 1222222222233345555 3689999999865443322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..+|++++|+|+..+.+... ..+...+.....+.|+++|+||+|+...
T Consensus 92 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 92 ---------------------------LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp ---------------------------GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred ---------------------------hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 33577899999999876432222 2344455554468999999999998754
Q ss_pred hhhh---------------hHHH-HhcCC-CceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIMQ---------------VSEF-WSLGF-SPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~---------------~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ...+ ...+. +++++||++|.|++++++.+.+.+.
T Consensus 145 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 145 EHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2110 0111 12344 6899999999999999999988654
No 119
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.67 E-value=8.9e-17 Score=143.84 Aligned_cols=156 Identities=13% Similarity=0.081 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC---CceeeEeeccccccccCCCchhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
..++|+++|.+|+|||||+|+|++.... ....+..+.......+.+. ...+.+|||||.......
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----------- 74 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL----------- 74 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh-----------
Confidence 3679999999999999999999976532 1112222333444445554 246899999997543322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-----CCCeEEEEecc
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-----MDKFIILAVNK 312 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-----~~~p~ilV~NK 312 (484)
....+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||
T Consensus 75 ---------------------------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 127 (182)
T 1ky3_A 75 ---------------------------GVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127 (182)
T ss_dssp -----------------------------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEEC
T ss_pred ---------------------------hHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEEC
Confidence 12345778999999998765332222 2222232221 47899999999
Q ss_pred cCCCchh----hhhhHHHH--hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 313 CESPRKG----IMQVSEFW--SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 313 ~Dl~~~~----~~~~~~~~--~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+|+.... ......+. ..+.+++++||++|.|++++++.+.+.+.
T Consensus 128 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence 9996432 11122222 24568999999999999999999987664
No 120
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=6.2e-16 Score=135.76 Aligned_cols=154 Identities=18% Similarity=0.192 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..+|+++|.+|+|||||+|+|.+... .....+++.........+.+. .+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~--------------- 65 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------------- 65 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC---------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh---------------
Confidence 35899999999999999999997642 222333333333444455443 47899999975422
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc--CCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
......+..+|.+++|+|+..+.+... ..+...+.... .+.|+++|+||+|+..
T Consensus 66 -----------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 66 -----------------------AMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp -----------------------HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred -----------------------HHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 122345678999999999765422211 12223333322 2789999999999876
Q ss_pred hhhh--hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM--QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~--~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ....+ ...+++++++||++|.|++++++++.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3211 11112 234678999999999999999999987653
No 121
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.1e-16 Score=169.88 Aligned_cols=148 Identities=22% Similarity=0.226 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeec------------------------------CCCceeeeeEEEEEeCC
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVD------------------------------EPGVTRDRMYGRSFWGE 210 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~------------------------------~~~~t~~~~~~~~~~~~ 210 (484)
...++|+++|++|+|||||+|+|++........ .+|+|.......+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 457899999999999999999999764222211 25777777777778888
Q ss_pred ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC-----
Q 011511 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG----- 285 (484)
Q Consensus 211 ~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~----- 285 (484)
..+.+|||||+..+. +.+...+..+|++|+|+|+..+
T Consensus 245 ~~~~iiDTPG~e~f~--------------------------------------~~~~~~~~~aD~~llVVDa~~g~~e~~ 286 (611)
T 3izq_1 245 ANFTIVDAPGHRDFV--------------------------------------PNAIMGISQADMAILCVDCSTNAFESG 286 (611)
T ss_dssp CEEEEEECCSSSCHH--------------------------------------HHHTTTSSCCSEEEEEEECSHHHHHTT
T ss_pred ceEEEEECCCCcccH--------------------------------------HHHHHHHhhcCceEEEEECCCCccccc
Confidence 899999999985421 3344566789999999998764
Q ss_pred --CCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh--h----hh-HHH-Hhc-----CCCceeeecccCCCCchh
Q 011511 286 --LTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI--M----QV-SEF-WSL-----GFSPLPISAISGTGTGEL 347 (484)
Q Consensus 286 --~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~----~~-~~~-~~~-----~~~~i~vSa~~g~gi~~L 347 (484)
......+....+... ...++++|+||+|+..... . .. ..+ ... ..+++++||++|.|+.++
T Consensus 287 ~~~~~qt~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 287 FDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CCTTSHHHHHHHHHHTT-TCCEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhhhHHHHHHHHHHHc-CCCeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 223344444444433 2245999999999986211 1 11 111 112 347899999999999876
No 122
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=5.8e-17 Score=147.11 Aligned_cols=158 Identities=18% Similarity=0.079 Sum_probs=101.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecC-------CCceeeeeEEEE---Ee--CCceeeEeeccccccccCCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDE-------PGVTRDRMYGRS---FW--GEHEFMLVDTGGVLNVSKSQP 229 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~-------~~~t~~~~~~~~---~~--~~~~i~liDtpG~~~~~~~~~ 229 (484)
..++|+++|.+|||||||++.+.+......... ...|........ .+ ....+.+|||||...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 367999999999999999998887642211110 111221111110 11 12358999999986432
Q ss_pred hhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHH----HHHHHh---hcC
Q 011511 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEI----ADWLRK---NYM 302 (484)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~----~~~l~~---~~~ 302 (484)
.....++..+|++|+|+|+..+....+... ..|+.. ...
T Consensus 89 ----------------------------------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~ 134 (198)
T 3t1o_A 89 ----------------------------------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLD 134 (198)
T ss_dssp ----------------------------------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred ----------------------------------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccC
Confidence 123356788999999999874433333322 233333 125
Q ss_pred CCeEEEEecccCCCchhhhhh-HHH-HhcCC-CceeeecccCCCCchhhHHHHHHhhh
Q 011511 303 DKFIILAVNKCESPRKGIMQV-SEF-WSLGF-SPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~~~~~-~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+.|+++|+||+|+........ ..+ ...++ +++++||++|.|++++++++.+.+.+
T Consensus 135 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 135 DVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp SSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHH
Confidence 789999999999976432222 222 23466 88999999999999999999887653
No 123
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.67 E-value=6e-16 Score=158.47 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=105.5
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceee------------------------------ecCCCceeeeeEEEEEeC
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWG 209 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~ 209 (484)
....++|+++|++|+|||||+|+|++...... ....+.|.+.....+...
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 34578999999999999999999965421111 112567887777778888
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC--
Q 011511 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT-- 287 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~-- 287 (484)
+..+.+|||||+.++ .+.+...+..+|++|+|+|+..+..
T Consensus 94 ~~~~~iiDTPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVVDa~~g~~e~ 135 (439)
T 3j2k_7 94 KKHFTILDAPGHKSF--------------------------------------VPNMIGGASQADLAVLVISARKGEFET 135 (439)
T ss_pred CeEEEEEECCChHHH--------------------------------------HHHHHhhHhhCCEEEEEEECCCCcccc
Confidence 889999999998642 1344566788999999999988754
Q ss_pred -----cccHHHHHHHHhhcCCCe-EEEEecccCCCchhh----h----h-hHHHH-hc------CCCceeeecccCCCCc
Q 011511 288 -----AADEEIADWLRKNYMDKF-IILAVNKCESPRKGI----M----Q-VSEFW-SL------GFSPLPISAISGTGTG 345 (484)
Q Consensus 288 -----~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~~~----~----~-~~~~~-~~------~~~~i~vSa~~g~gi~ 345 (484)
.+..+.+..+... +.| +++|+||+|+..... . . ...+. .. .++++++||++|.|+.
T Consensus 136 ~~~~~~qt~e~l~~~~~~--~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~ 213 (439)
T 3j2k_7 136 GFEKGGQTREHAMLAKTA--GVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLK 213 (439)
T ss_pred ccCCCchHHHHHHHHHHc--CCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccc
Confidence 3444555544443 666 899999999864211 0 1 11111 12 3468999999999999
Q ss_pred hhhH
Q 011511 346 ELLD 349 (484)
Q Consensus 346 ~L~~ 349 (484)
++.+
T Consensus 214 ~l~~ 217 (439)
T 3j2k_7 214 EQSD 217 (439)
T ss_pred cccc
Confidence 8654
No 124
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=1.8e-16 Score=147.51 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=101.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+|+|.+|||||||+++|++..... ...+..+.......+.+.+ ..+.+|||||...+.....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~----------- 80 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNM-DSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS----------- 80 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG-----------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH-----------
Confidence 5799999999999999999999875322 1223333333344455655 4789999999876544332
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
.++..+|++|+|+|+..+.+.... .++..+... ..+.|+++|+||+|+...
T Consensus 81 ---------------------------~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 133 (223)
T 3cpj_B 81 ---------------------------AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133 (223)
T ss_dssp ---------------------------GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred ---------------------------HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 335778999999998765333221 122333332 236899999999998753
Q ss_pred hhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 319 GIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
... ....+ ...+++++++||++|.|++++++++.+.+.+.
T Consensus 134 ~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTC
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 211 11122 23567889999999999999999998877543
No 125
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=2.4e-16 Score=145.82 Aligned_cols=155 Identities=19% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC------------CceeeEeeccccccccCCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG------------EHEFMLVDTGGVLNVSKSQP 229 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~------------~~~i~liDtpG~~~~~~~~~ 229 (484)
..++|+|+|.+|||||||+|+|++.... ....+..........+.+. ...+.+|||||...+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~---- 98 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFR---- 98 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHH----
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHH----
Confidence 3579999999999999999999986531 1111111222222233333 3468999999964311
Q ss_pred hhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc-----CCC
Q 011511 230 NIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-----MDK 304 (484)
Q Consensus 230 ~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~-----~~~ 304 (484)
......+..+|++|+|+|+..+.+. ..+..|+.... .+.
T Consensus 99 ----------------------------------~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~ 142 (217)
T 2f7s_A 99 ----------------------------------SLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENP 142 (217)
T ss_dssp ----------------------------------HHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCC
T ss_pred ----------------------------------hHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCC
Confidence 2344667889999999998754322 12334444321 468
Q ss_pred eEEEEecccCCCchhhh---hhHHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 305 FIILAVNKCESPRKGIM---QVSEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~~~---~~~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
|+++|+||+|+...... ....+ ...+++++++||++|.|++++++++.+.+.+
T Consensus 143 piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred CEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999763221 11122 2356789999999999999999999887654
No 126
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.66 E-value=1.4e-17 Score=152.13 Aligned_cols=156 Identities=19% Similarity=0.150 Sum_probs=99.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++... .....+..+.......+.+++ ..+.+|||||...+.....
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 100 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS---------- 100 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCC-CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCC-CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHH----------
Confidence 468999999999999999999998653 222233344445555566666 4689999999766544332
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhhc-CCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKNY-MDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~-~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .++..+.... .+.|+++|+||+|+..
T Consensus 101 ----------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~ 152 (199)
T 3l0i_B 101 ----------------------------SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTT 152 (199)
T ss_dssp ----------------------------C--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC-
T ss_pred ----------------------------HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCc
Confidence 345778999999998764332221 1222233221 3689999999999875
Q ss_pred hhhh---hhH-HHHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIM---QVS-EFWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~---~~~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.... ... .....+++++++||++|.|++++++++.+.+.
T Consensus 153 ~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 153 KKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred cccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4321 111 12345678999999999999999999977654
No 127
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.66 E-value=1.8e-17 Score=172.22 Aligned_cols=154 Identities=19% Similarity=0.253 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
+.++|+++|++|+|||||+++|++.... ....+++|.+.....+.+ .+..+++|||||+..+.....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~----------- 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA----------- 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH-----------
Confidence 4689999999999999999999976532 234566777665555555 466899999999876655432
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI 320 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~ 320 (484)
..+..+|++++|+|+..+......+.+..+... +.|+++|+||+|+.....
T Consensus 71 ---------------------------~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~--~vPiIVViNKiDl~~~~~ 121 (537)
T 3izy_P 71 ---------------------------RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA--HVPIVLAINKCDKAEADP 121 (537)
T ss_dssp ---------------------------SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT--TCCEEECCBSGGGTTTSC
T ss_pred ---------------------------HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc--CCcEEEEEecccccccch
Confidence 234678999999999988877777777766664 889999999999875321
Q ss_pred h---hhHHHH-------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 321 M---QVSEFW-------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 321 ~---~~~~~~-------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
. ...... ...++++++||++|.|+++|++.+.....
T Consensus 122 ~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 122 EKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 1 111111 01236889999999999999999987754
No 128
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.66 E-value=4.3e-16 Score=139.22 Aligned_cols=150 Identities=11% Similarity=0.110 Sum_probs=100.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|||||||+++|++..... +..+........+.+++. .+.+|||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~---------- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV---LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----A---------- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC---CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----H----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC---cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----h----------
Confidence 35799999999999999999999875432 222222233344455553 578999999753 0
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHHHhh----cCCCeEEEEecccC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWLRKN----YMDKFIILAVNKCE 314 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l~~~----~~~~p~ilV~NK~D 314 (484)
.++..+|++++|+|+..+.+..... +..++... ..+.|+++|+||+|
T Consensus 68 ----------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 119 (178)
T 2iwr_A 68 ----------------------------KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDR 119 (178)
T ss_dssp ----------------------------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTT
T ss_pred ----------------------------HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 3457799999999987654333222 22233332 14789999999999
Q ss_pred CCc--hhh---hhhHHHHh--cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 315 SPR--KGI---MQVSEFWS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 315 l~~--~~~---~~~~~~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+.. ... .....+.. .+++++++||++|.|++++++.+.+.+..
T Consensus 120 l~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 120 ISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVT 169 (178)
T ss_dssp CBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred ccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence 842 111 11122222 25688999999999999999999877643
No 129
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.65 E-value=1.2e-16 Score=154.78 Aligned_cols=143 Identities=18% Similarity=0.150 Sum_probs=98.9
Q ss_pred HhhhcCeEEEEeeCCCCCCcccHHHHHHHHh-hcCCCeEEEEecccCCCchhh-----hhhHHHH-hcCCCceeeecccC
Q 011511 269 AIEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGI-----MQVSEFW-SLGFSPLPISAISG 341 (484)
Q Consensus 269 ~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~~-~~~~~~i~vSa~~g 341 (484)
.+.++|.+++|+|+..|....+ .+.++|.. ...++|.++|+||+|+.+... .....++ ..+++++.+||.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~ 161 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ 161 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4789999999999998877765 45555542 224899999999999987533 2233333 56889999999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-------Cceecccceee
Q 011511 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-------GTTRDAIDTEF 414 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-------gtt~~~~~~~~ 414 (484)
.|+++|+... .+..++++|+||+|||||+|+|+|.....++.++ ++|+.......
T Consensus 162 ~g~~~L~~~~------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~ 223 (307)
T 1t9h_A 162 DSLADIIPHF------------------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHT 223 (307)
T ss_dssp TTCTTTGGGG------------------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEE
T ss_pred CCHHHHHhhc------------------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhc
Confidence 9999887653 2458999999999999999999998776666655 46655432221
Q ss_pred ecCCCCcEEEEEcCCCccCcc
Q 011511 415 TGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 415 ~~~~g~~i~liDTPG~~~~~~ 435 (484)
. ...|+||||++.+.+
T Consensus 224 ---~--~g~v~dtpg~~~~~l 239 (307)
T 1t9h_A 224 ---S--GGLVADTPGFSSLEF 239 (307)
T ss_dssp ---T--TEEEESSCSCSSCCC
T ss_pred ---C--CEEEecCCCcccccc
Confidence 1 358999999987654
No 130
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.65 E-value=2.8e-16 Score=152.96 Aligned_cols=142 Identities=21% Similarity=0.199 Sum_probs=99.2
Q ss_pred HhhhcCeEEEEeeCCCCCCccc--HHHHHHHHhhcCCCeEEEEecccCCCchh----hhhhHH-HHhcCCCceeeecccC
Q 011511 269 AIEESCVIIFLVDGQAGLTAAD--EEIADWLRKNYMDKFIILAVNKCESPRKG----IMQVSE-FWSLGFSPLPISAISG 341 (484)
Q Consensus 269 ~~~~~d~vilVvD~~~~~~~~~--~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~----~~~~~~-~~~~~~~~i~vSa~~g 341 (484)
++.++|.+++|+|++.|..... ..++..+.. .+.|+++|+||+|+.+.. ...... +...+++++++||++|
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g 153 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTG 153 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTC
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4688999999999987753332 122223333 489999999999998653 122222 2345788999999999
Q ss_pred CCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-------ceecccceee
Q 011511 342 TGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-------TTRDAIDTEF 414 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-------tt~~~~~~~~ 414 (484)
.|+++|+..+. +..++++|+||+|||||+|+|+ .....++.+.. +|+.... .
T Consensus 154 ~gi~~L~~~l~------------------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~--~ 212 (302)
T 2yv5_A 154 EGIDELVDYLE------------------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRL--I 212 (302)
T ss_dssp TTHHHHHHHTT------------------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEE--E
T ss_pred CCHHHHHhhcc------------------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEE--E
Confidence 99999887653 2478999999999999999999 76666666653 4443322 1
Q ss_pred ecCCCCcEEEEEcCCCccCcc
Q 011511 415 TGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 415 ~~~~g~~i~liDTPG~~~~~~ 435 (484)
.. ....+++||||+..+.+
T Consensus 213 ~~--~~~g~v~d~pg~~~~~l 231 (302)
T 2yv5_A 213 PF--GKGSFVGDTPGFSKVEA 231 (302)
T ss_dssp EE--TTTEEEESSCCCSSCCG
T ss_pred Ec--CCCcEEEECcCcCcCcc
Confidence 11 12358999999986543
No 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=142.02 Aligned_cols=154 Identities=14% Similarity=0.091 Sum_probs=100.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|||||||+++|++... ...+.+++.........+.+ ..+.+|||||...+...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------------ 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRF--ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC------------ 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT------------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH------------
Confidence 467999999999999999999997652 23333333333333344444 35789999998653321
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh----cCCCeEEEEecccC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN----YMDKFIILAVNKCE 314 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~----~~~~p~ilV~NK~D 314 (484)
..++..+|++++|+|+..+.+.... .++..+... ..+.|+++|+||+|
T Consensus 86 ---------------------------~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~D 138 (187)
T 3c5c_A 86 ---------------------------ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138 (187)
T ss_dssp ---------------------------HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGG
T ss_pred ---------------------------HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcc
Confidence 1355779999999998754322221 122333322 14789999999999
Q ss_pred CCchhhh---hhHH-HHhcCCCceeeec-ccCCCCchhhHHHHHHhh
Q 011511 315 SPRKGIM---QVSE-FWSLGFSPLPISA-ISGTGTGELLDLVCSELK 356 (484)
Q Consensus 315 l~~~~~~---~~~~-~~~~~~~~i~vSa-~~g~gi~~L~~~i~~~l~ 356 (484)
+...... .... ....+++++++|| ++|.|++++++.+.+.+.
T Consensus 139 l~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 139 MAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp GGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred hhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence 8653221 1111 2234678999999 899999999999987653
No 132
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.65 E-value=8.1e-16 Score=151.66 Aligned_cols=153 Identities=20% Similarity=0.236 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+|+|.+|||||||+++|++...... .+ |.......+...+..+.+|||||...+...
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~--~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-------------- 225 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVEYKNISFTVWDVGGQDKIRPL-------------- 225 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE--EE--ETTEEEEEEEETTEEEEEEECC-----CCS--------------
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc--cc--ccceEEEEEecCcEEEEEEECCCCHhHHHH--------------
Confidence 467999999999999999999998764322 22 555555667778889999999997654332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
....+..+|++|+|+|+..+...... .+...+... ..+.|+++|+||+|+...
T Consensus 226 ------------------------~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 226 ------------------------WRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp ------------------------HHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred ------------------------HHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 22456789999999998765443222 222222221 247899999999999764
Q ss_pred hhhhh-HHHHh------cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 319 GIMQV-SEFWS------LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 319 ~~~~~-~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... ..... .+++++++||++|.|++++++.|.+.+.
T Consensus 282 ~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 282 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp CCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred cCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 32221 11111 2346899999999999999999988764
No 133
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=5.6e-16 Score=153.95 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=94.8
Q ss_pred CCCCCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhh
Q 011511 157 NVPEHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 157 ~~~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~ 236 (484)
...+....+|+|+|.||||||||+|+|++.. ..++++|++|.++..+.+.+.+.++.++||||+.........
T Consensus 66 ~v~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~------ 138 (376)
T 4a9a_A 66 DVARTGVASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG------ 138 (376)
T ss_dssp TBCBCSSEEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C------
T ss_pred eEeecCCCeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH------
Confidence 3456667899999999999999999999976 678899999999999999999999999999999754332211
Q ss_pred hhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhh---cCCCeEEEEeccc
Q 011511 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKN---YMDKFIILAVNKC 313 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~ 313 (484)
+.++++..+..+|++++|+|+.+|....+ .+...|... +..+|.++++||+
T Consensus 139 -------------------------~g~~~l~~i~~ad~il~vvD~~~p~~~~~-~i~~EL~~~~~~l~~k~~~i~~nK~ 192 (376)
T 4a9a_A 139 -------------------------RGKQVIAVARTCNLLFIILDVNKPLHHKQ-IIEKELEGVGIRLNKTPPDILIKKK 192 (376)
T ss_dssp -------------------------HHHHHHHHHHHCSEEEEEEETTSHHHHHH-HHHHHHHHTTEEETCCCCCEEEEEC
T ss_pred -------------------------HHHHHHHHHHhcCccccccccCccHHHHH-HHHHHHHHhhHhhccCChhhhhhHh
Confidence 22567788899999999999876532221 122223321 2457888899999
Q ss_pred CC
Q 011511 314 ES 315 (484)
Q Consensus 314 Dl 315 (484)
|.
T Consensus 193 d~ 194 (376)
T 4a9a_A 193 EK 194 (376)
T ss_dssp SS
T ss_pred hh
Confidence 84
No 134
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.65 E-value=1.8e-15 Score=136.39 Aligned_cols=164 Identities=26% Similarity=0.338 Sum_probs=100.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGM 243 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 243 (484)
++|+++|.+|||||||+|+|++.. ......+++|....... +. .+.+|||||+...........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~--~~--~~~l~Dt~G~~~~~~~~~~~~----------- 65 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIE--WK--NHKIIDMPGFGFMMGLPKEVQ----------- 65 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEE--ET--TEEEEECCCBSCCTTSCHHHH-----------
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEe--cC--CEEEEECCCccccccCCHHHH-----------
Confidence 689999999999999999999875 34455666666554432 32 789999999754322111000
Q ss_pred CCCchhHHHHHHhhchHHHHHHHHHH-hhhcCeEEEEeeCCCCC-----------CcccHHHHHHHHhhcCCCeEEEEec
Q 011511 244 EGIPLATREAAVARMPSMIERQATAA-IEESCVIIFLVDGQAGL-----------TAADEEIADWLRKNYMDKFIILAVN 311 (484)
Q Consensus 244 ~G~~~~~~~~~v~~~~~~~~~~~~~~-~~~~d~vilVvD~~~~~-----------~~~~~~~~~~l~~~~~~~p~ilV~N 311 (484)
+++.... ...... ...++++++|+|..... ...+..+...+.. .+.|+++|+|
T Consensus 66 ------------~~~~~~~-~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~n 130 (190)
T 2cxx_A 66 ------------ERIKDEI-VHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVN 130 (190)
T ss_dssp ------------HHHHHHH-HHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEE
T ss_pred ------------HHHHHHH-HHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEee
Confidence 0011111 112222 55577888888854211 0111122233333 3799999999
Q ss_pred ccCCCchhhhhhHHH-HhcCC-------CceeeecccCCCCchhhHHHHHHhhhc
Q 011511 312 KCESPRKGIMQVSEF-WSLGF-------SPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 312 K~Dl~~~~~~~~~~~-~~~~~-------~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
|+|+..........+ ...+. +++++||++|.|++++++.+.+.+.+.
T Consensus 131 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 131 KLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp CGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred hHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 999976431111111 12233 368999999999999999998877543
No 135
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.65 E-value=8.9e-16 Score=141.62 Aligned_cols=151 Identities=20% Similarity=0.186 Sum_probs=94.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC---CceeeEeeccccccccCCCchhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---EHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
..++|+++|.+|||||||+++|++... ...++.++.. ...+.++ +..+.+|||||+..+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~------------ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRF------------ 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHH------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCccee--eEEEEecCCCccEEEEEECCCChhHHH------------
Confidence 468999999999999999999997652 2333333322 2235555 56799999999864211
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHH----h---hcCCCeEEEEec
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR----K---NYMDKFIILAVN 311 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~----~---~~~~~p~ilV~N 311 (484)
.....++..+|++++|+|+.... ........++. . ...+.|+++|+|
T Consensus 70 -------------------------~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 70 -------------------------QLLDRFKSSARAVVFVVDSAAFQ-REVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp -------------------------HHHHHHGGGEEEEEEEEETTTHH-HHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred -------------------------HHHHHHHhhCCEEEEEEECCCcC-HHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 12234578899999999986411 11112222222 2 123689999999
Q ss_pred ccCCCchhhhhh----HH-HH----------------------------------hc--CCCceeeecccC------CCC
Q 011511 312 KCESPRKGIMQV----SE-FW----------------------------------SL--GFSPLPISAISG------TGT 344 (484)
Q Consensus 312 K~Dl~~~~~~~~----~~-~~----------------------------------~~--~~~~i~vSa~~g------~gi 344 (484)
|+|+........ +. .. .. +.+++++||++| .|+
T Consensus 124 K~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv 203 (214)
T 2fh5_B 124 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADI 203 (214)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBC
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccCh
Confidence 999875321100 00 00 00 446789999999 999
Q ss_pred chhhHHHHHH
Q 011511 345 GELLDLVCSE 354 (484)
Q Consensus 345 ~~L~~~i~~~ 354 (484)
+++++++.+.
T Consensus 204 ~~lf~~l~~~ 213 (214)
T 2fh5_B 204 QDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 136
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.65 E-value=5.7e-16 Score=145.83 Aligned_cols=170 Identities=18% Similarity=0.262 Sum_probs=104.7
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCC--CceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP--GVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
....++|+|+|.+|+|||||+|+|+|.... ....+ ++|..+......+.+..+.+|||||+...........+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~---- 100 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSK---- 100 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHH----
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHH----
Confidence 345689999999999999999999997642 33333 67788888888888999999999999764433222111
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc---CCCeEEEEecccC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY---MDKFIILAVNKCE 314 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~---~~~p~ilV~NK~D 314 (484)
.+.+.+......+|++|+|+|+.. ....+..++..+...+ ...|+++|+||+|
T Consensus 101 -----------------------~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D 156 (239)
T 3lxx_A 101 -----------------------EIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTRKD 156 (239)
T ss_dssp -----------------------HHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEECGG
T ss_pred -----------------------HHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeCCc
Confidence 122333344556799999999863 4444445555544321 2469999999999
Q ss_pred CCchhhhh---------hHH-HHhcCCCceeeeccc-----CCCCchhhHHHHHHhhhc
Q 011511 315 SPRKGIMQ---------VSE-FWSLGFSPLPISAIS-----GTGTGELLDLVCSELKKV 358 (484)
Q Consensus 315 l~~~~~~~---------~~~-~~~~~~~~i~vSa~~-----g~gi~~L~~~i~~~l~~~ 358 (484)
+....... ... ....+..++.+++.. ..|+.+|+..+...+.+.
T Consensus 157 ~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 157 DLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp GC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 86542211 111 122344555555543 368888888887776543
No 137
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=3.7e-16 Score=142.18 Aligned_cols=156 Identities=17% Similarity=0.149 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
..++|+++|.+|||||||+|+|++.... ..+..+............+ ..+.+|||||...+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 70 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFR--DTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------------- 70 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCC--CTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH--------------
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCC--CcccCccccceeEEEEECCEEEEEEEEeCCChHHhH--------------
Confidence 4679999999999999999999976432 1111111112222233333 368999999975422
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhh---cCCCeEEEEecccCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKN---YMDKFIILAVNKCES 315 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~---~~~~p~ilV~NK~Dl 315 (484)
......+..+|++++|+|+..+..... ..++..+... ..+.|+++|+||+|+
T Consensus 71 ------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl 126 (199)
T 2gf0_A 71 ------------------------AMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDE 126 (199)
T ss_dssp ------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTC
T ss_pred ------------------------HHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccC
Confidence 122345678999999999876432221 1233333332 236899999999999
Q ss_pred Cchhhhh--hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 316 PRKGIMQ--VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~~--~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... ... ....+++++++||++|.|++++++++.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 127 TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp SSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred CccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 7632211 111 22346788999999999999999999887654
No 138
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=4.6e-16 Score=141.59 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++.... ..+..+........+.+.+ ..+.+|||||... .
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----~---------- 89 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED----T---------- 89 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC----C----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc----c----------
Confidence 34689999999999999999999986532 2222222222233344544 4589999999864 1
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl 315 (484)
......+..+|++++|+|+..+.+.... .+...+... ..+.|+++|+||+|+
T Consensus 90 -------------------------~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl 144 (196)
T 2atv_A 90 -------------------------IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144 (196)
T ss_dssp -------------------------HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGG
T ss_pred -------------------------cchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECccc
Confidence 2233566789999999998764332222 223333332 247899999999998
Q ss_pred Cchhhh---hhHHH-HhcCCCceeeecccCC-CCchhhHHHHHHhhh
Q 011511 316 PRKGIM---QVSEF-WSLGFSPLPISAISGT-GTGELLDLVCSELKK 357 (484)
Q Consensus 316 ~~~~~~---~~~~~-~~~~~~~i~vSa~~g~-gi~~L~~~i~~~l~~ 357 (484)
...... ....+ ...+++++++||++|. |++++++.+.+.+.+
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 145 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp GGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 763211 11112 2346789999999999 999999999887643
No 139
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.64 E-value=1.5e-16 Score=145.68 Aligned_cols=157 Identities=17% Similarity=0.181 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCce-eeeeEEEEEeCC----ceeeEeeccccccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVT-RDRMYGRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t-~~~~~~~~~~~~----~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.++|+++|.+|||||||+|+|++........+.+++ .+.....+.+.+ ..+.+|||||+..+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------ 87 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK------------ 87 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH------------
Confidence 579999999999999999999987322223333333 234444556664 368999999985421
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc----CCCeEEEEecc
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY----MDKFIILAVNK 312 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~----~~~p~ilV~NK 312 (484)
......+..+|++++|+|+..+.+... ..++..+.... .+.|+++|+||
T Consensus 88 --------------------------~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK 141 (208)
T 2yc2_C 88 --------------------------EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141 (208)
T ss_dssp --------------------------HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEEC
T ss_pred --------------------------HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEEC
Confidence 122244577999999999876543222 12333333322 37899999999
Q ss_pred cCCCc-hhhh---hhHHH-HhcCCCceeeeccc-CCCCchhhHHHHHHhhh
Q 011511 313 CESPR-KGIM---QVSEF-WSLGFSPLPISAIS-GTGTGELLDLVCSELKK 357 (484)
Q Consensus 313 ~Dl~~-~~~~---~~~~~-~~~~~~~i~vSa~~-g~gi~~L~~~i~~~l~~ 357 (484)
+|+.. .... ....+ ...+++++++||++ |.|++++++++.+.+.+
T Consensus 142 ~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192 (208)
T ss_dssp C-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHH
T ss_pred cccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHH
Confidence 99976 3211 11222 23567899999999 99999999999887653
No 140
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.64 E-value=6.2e-17 Score=166.71 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=110.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
+.++|+++|++++|||||+++|++... .....++.|.+.....+.+++..+++|||||+..+.....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~------------ 69 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRA------------ 69 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBC------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHH------------
Confidence 478999999999999999999987532 2233355565554445556778899999999977654332
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhh
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
..+..+|++++|+|+.++...+..+.+..+... +.|+++++||+|+......
T Consensus 70 --------------------------~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~--~vPiIVviNKiDl~~~~~~ 121 (501)
T 1zo1_I 70 --------------------------RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA--QVPVVVAVNKIDKPEADPD 121 (501)
T ss_dssp --------------------------SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT--TCCEEEEEECSSSSTTCCC
T ss_pred --------------------------HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc--CceEEEEEEeccccccCHH
Confidence 234678999999999887777777777666654 8899999999999753211
Q ss_pred ---hhH---HHH----hcCCCceeeecccCCCCchhhHHHHH
Q 011511 322 ---QVS---EFW----SLGFSPLPISAISGTGTGELLDLVCS 353 (484)
Q Consensus 322 ---~~~---~~~----~~~~~~i~vSa~~g~gi~~L~~~i~~ 353 (484)
... .+. ...++++++||++|.|+++|++.+..
T Consensus 122 ~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 122 RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 110 000 11257899999999999999998864
No 141
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.64 E-value=1e-15 Score=138.10 Aligned_cols=152 Identities=15% Similarity=0.142 Sum_probs=101.4
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhh
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
....+||+++|.+|||||||++++++.... ..... |.......+.+++. .+.+|||+|...+.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~--~~~~~-t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------------ 81 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYV--QEESP-EGGRFKKEIVVDGQSYLLLIRDEGGPPELQ------------ 81 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCC--CCCCT-TCEEEEEEEEETTEEEEEEEEECSSSCCHH------------
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCC-CcceEEEEEEECCEEEEEEEEECCCChhhh------------
Confidence 345689999999999999999999876532 11222 23333455666664 46779999985411
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc-HHHHHHHHhhc--CCCeEEEEecccC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD-EEIADWLRKNY--MDKFIILAVNKCE 314 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~-~~~~~~l~~~~--~~~p~ilV~NK~D 314 (484)
++..+|++++|+|+..+.+... ..++..+.... .+.|+++|+||+|
T Consensus 82 -------------------------------~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~D 130 (184)
T 3ihw_A 82 -------------------------------FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDA 130 (184)
T ss_dssp -------------------------------HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTT
T ss_pred -------------------------------eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcc
Confidence 4567999999999876543333 22333343321 3679999999999
Q ss_pred CCch--hh---hhhHHHH-hcC-CCceeeecccCCCCchhhHHHHHHhhh
Q 011511 315 SPRK--GI---MQVSEFW-SLG-FSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 315 l~~~--~~---~~~~~~~-~~~-~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+... .. .....+. ..+ .+++++||++|.|+++++..+.+.+..
T Consensus 131 l~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp CBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 8421 11 1111222 233 678999999999999999999876643
No 142
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.64 E-value=5.3e-16 Score=163.51 Aligned_cols=186 Identities=19% Similarity=0.246 Sum_probs=116.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceee--------------ecCCCceeeeeEEEEEeC-----CceeeEeecccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV--------------VDEPGVTRDRMYGRSFWG-----EHEFMLVDTGGVLN 223 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-----~~~i~liDtpG~~~ 223 (484)
.++|+|+|+.|+|||||+++|+....... ....|.|.......+.+. +..+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 57899999999999999999975321110 012344554444444443 25689999999975
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011511 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ......+..+|.+|+|+|+..+........+..+... +
T Consensus 84 F~--------------------------------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~--~ 123 (599)
T 3cb4_D 84 FS--------------------------------------YEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM--D 123 (599)
T ss_dssp GH--------------------------------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT--T
T ss_pred HH--------------------------------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC--C
Confidence 32 2344667889999999999988777666555544444 8
Q ss_pred CeEEEEecccCCCchhhhhhH-HH-HhcCC---CceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEc
Q 011511 304 KFIILAVNKCESPRKGIMQVS-EF-WSLGF---SPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVG 378 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~~~-~~-~~~~~---~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG 378 (484)
.|+++|+||+|+......... .+ ...++ +++++||++|.|+++|++.+.+.++..... .....+..+..
T Consensus 124 ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~------~~~p~~alI~d 197 (599)
T 3cb4_D 124 LEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGD------PEGPLQALIID 197 (599)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCC------TTSCCEEEEEE
T ss_pred CCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCcccc------ccCCceeeeee
Confidence 899999999999764322111 11 11243 489999999999999999999887643321 11112222222
Q ss_pred ---CCCCCchhHHHhhhcC
Q 011511 379 ---RPNVGKSSILNALVGE 394 (484)
Q Consensus 379 ---~~g~GKSTLiN~Llg~ 394 (484)
.+++|+.++++.+.|.
T Consensus 198 ~~~d~~~G~v~~~rV~sG~ 216 (599)
T 3cb4_D 198 SWFDNYLGVVSLIRIKNGT 216 (599)
T ss_dssp EEEETTTEEEEEEEEEESC
T ss_pred ccccccccEEEEEEEEeCE
Confidence 2678888888777764
No 143
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.44 E-value=1.5e-17 Score=152.43 Aligned_cols=154 Identities=15% Similarity=0.095 Sum_probs=101.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+++|++... ......++.......+.+++. .+.+|||||...+...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----------- 94 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRL----------- 94 (204)
Confidence 4578999999999999999999987542 222333333333333334443 4669999998653322
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
....+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+.
T Consensus 95 ---------------------------~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~ 147 (204)
T 3th5_A 95 ---------------------------RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147 (204)
Confidence 22445778999999998776444332 3444444433478999999999987
Q ss_pred chhh------------hhh---HHH-HhcCC-CceeeecccCCCCchhhHHHHHH
Q 011511 317 RKGI------------MQV---SEF-WSLGF-SPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 317 ~~~~------------~~~---~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
.... ... ..+ ...++ +++++||++|.|++++++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 5321 000 011 12244 78899999999999999988653
No 144
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.64 E-value=3.8e-16 Score=140.60 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=101.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|||||||+++|.+.... ..+..+........+.+.+ ..+.+|||||...+.....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~---------- 73 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP---------- 73 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGG----------
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHH----------
Confidence 3579999999999999999999976431 2222222222223334444 4589999999865443322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+..
T Consensus 74 ----------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 74 ----------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred ----------------------------hhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 234778999999998764333222 23344555446899999999999874
Q ss_pred hh-------------h--hhhHHHH-hcC-CCceeeecc-cCCCCchhhHHHHHHh
Q 011511 318 KG-------------I--MQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~-------------~--~~~~~~~-~~~-~~~i~vSa~-~g~gi~~L~~~i~~~l 355 (484)
.. . .....+. ..+ .+++++||+ ++.|+++++..+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred chhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 21 0 0111222 234 578999999 6899999999987754
No 145
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=6e-16 Score=160.15 Aligned_cols=155 Identities=23% Similarity=0.249 Sum_probs=110.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc------eeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDL 235 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~ 235 (484)
..++|+++|++++|||||+++|++... ......++.|.+.....+.+.+..+.+|||||+.++
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~----------- 86 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADL----------- 86 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHH-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHH-----------
Confidence 357999999999999999999998651 122334566766666666778889999999998541
Q ss_pred hhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCC
Q 011511 236 AITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 236 ~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
.+.....+..+|++++|+|+..+...+..+.+..+... +.|.++|+||+|+
T Consensus 87 ---------------------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~ip~IvviNK~Dl 137 (482)
T 1wb1_A 87 ---------------------------IRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF--NIPIIVVITKSDN 137 (482)
T ss_dssp ---------------------------HHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT--TCCBCEEEECTTS
T ss_pred ---------------------------HHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc--CCCEEEEEECCCc
Confidence 13455677889999999999887766666666666654 7889999999999
Q ss_pred Cchhhhh-----hHHHH-hc----CCCceeeecccCCCCchhhHHHHHHhh
Q 011511 316 PRKGIMQ-----VSEFW-SL----GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 316 ~~~~~~~-----~~~~~-~~----~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....... ...+. .. ..+++++||++|.|+++|++.|.+.+.
T Consensus 138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 8643211 11122 12 468899999999999999999988764
No 146
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.63 E-value=1e-15 Score=149.63 Aligned_cols=159 Identities=21% Similarity=0.215 Sum_probs=109.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-CCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-GEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..||+++|.+|||||||+|+|++.........++.|.........+ ++..+.+|||||...+.. .+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~---------- 69 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFME---NY---------- 69 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHH---HH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhh---hh----------
Confidence 4689999999999999999999875455566788888888777765 566899999999864300 00
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH-HHHHH---HhhcCCCeEEEEecccCCCc
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEE-IADWL---RKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~-~~~~l---~~~~~~~p~ilV~NK~Dl~~ 317 (484)
+.......+..+|++|+|+|+..+.+..+.. +..++ .....+.|+++|+||+|+..
T Consensus 70 --------------------~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 70 --------------------FTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp --------------------HTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred --------------------hhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 0122335567899999999988765444332 22233 33345899999999999986
Q ss_pred hhhh---------hhHHHH-hcC---CCceeeecccCCCCchhhHHHHHHh
Q 011511 318 KGIM---------QVSEFW-SLG---FSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~~~---------~~~~~~-~~~---~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.... ....+. ..+ .+++++||++ .++.+++..+...+
T Consensus 130 ~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 130 LDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 2211 111222 234 5789999999 77777777665543
No 147
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.63 E-value=4.3e-16 Score=143.67 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=100.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
..||+|+|.+|||||||+|++++....+...++.++.+.....+.+++.. +.+|||+|.... ..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~----~~---------- 102 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE----NE---------- 102 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH----HH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch----hh----------
Confidence 57999999999999999999997643333333444444444555666654 578999986431 00
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCCc
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESPR 317 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~ 317 (484)
.....++..+|++++|+|.....+.... .+...+... ..+.|+++|+||+|+..
T Consensus 103 -----------------------~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 -----------------------WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp -----------------------HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred -----------------------hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 0111234568999999997654322221 122333321 24789999999999975
Q ss_pred hhhhh--h-HH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQ--V-SE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~--~-~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..... . .. ....+++++++||++|.|+++++..+.+.+.
T Consensus 160 ~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 160 CREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp GCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 32111 1 11 1234568899999999999999999988764
No 148
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.63 E-value=8.6e-16 Score=139.56 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=99.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCce--eeEeeccccccc-cCCCchhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHE--FMLVDTGGVLNV-SKSQPNIMEDLAITT 239 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDtpG~~~~-~~~~~~~~~~~~~~~ 239 (484)
.++|+++|.+|||||||+|++++.........+.++.+.....+.+++.. +.+|||+|.... ....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~----------- 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH----------- 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG-----------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH-----------
Confidence 47999999999999999999997543333333444444444556666654 578999986531 1111
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh--cCCCeEEEEecccCCC
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN--YMDKFIILAVNKCESP 316 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~ 316 (484)
..++..+|++++|+|.....+.... .+...+... ..+.|+++|.||+|+.
T Consensus 75 ---------------------------~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~ 127 (192)
T 2cjw_A 75 ---------------------------DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV 127 (192)
T ss_dssp ---------------------------GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG
T ss_pred ---------------------------HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh
Confidence 1234668999999998654332221 222333332 2368999999999986
Q ss_pred chhhhhh---HHH-HhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 317 RKGIMQV---SEF-WSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 317 ~~~~~~~---~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
....... ..+ ...+.+++++||++|.|+++++..+.+.+..
T Consensus 128 ~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 128 RXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRL 172 (192)
T ss_dssp GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHh
Confidence 5322111 111 2345678999999999999999999887643
No 149
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.62 E-value=6.1e-16 Score=142.11 Aligned_cols=154 Identities=14% Similarity=0.123 Sum_probs=101.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhhhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAITT 239 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~~~ 239 (484)
...+|+++|.+|||||||+|+|++.... ..+..+........+.+++ ..+.+|||||...+.....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------- 94 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFP--ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRP---------- 94 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGG----------
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCC--CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHH----------
Confidence 3579999999999999999999986532 2222222222223344444 4589999999865443322
Q ss_pred hcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 240 TIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 240 ~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
..+..+|++|+|+|+..+.+.... .+...+.....+.|+++|+||+|+..
T Consensus 95 ----------------------------~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 95 ----------------------------LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp ----------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred ----------------------------hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 235778999999998764333222 23344555446899999999999874
Q ss_pred hh-------------h--hhhHHHH-hcC-CCceeeecc-cCCCCchhhHHHHHHh
Q 011511 318 KG-------------I--MQVSEFW-SLG-FSPLPISAI-SGTGTGELLDLVCSEL 355 (484)
Q Consensus 318 ~~-------------~--~~~~~~~-~~~-~~~i~vSa~-~g~gi~~L~~~i~~~l 355 (484)
.. . .....+. ..+ .+++++||+ ++.|+++++..+.+.+
T Consensus 147 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred chhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 21 0 0111222 234 578999999 6899999999987754
No 150
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.62 E-value=1e-15 Score=137.92 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=94.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCc-eeeeeEEEEEe-----CCceeeEeeccccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGV-TRDRMYGRSFW-----GEHEFMLVDTGGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~-t~~~~~~~~~~-----~~~~i~liDtpG~~~~~~~~~~~~~~~~ 236 (484)
..+|+++|.+|||||||+++|++........+..+ ........+.+ ....+.+|||+|...+.....
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~------- 74 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP------- 74 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH-------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH-------
Confidence 46899999999999999999998532222222111 12221111111 245789999999865433221
Q ss_pred hhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC-ccc-HHHHHHHHhhcCCCeEEEEecccC
Q 011511 237 ITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT-AAD-EEIADWLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~-~~~-~~~~~~l~~~~~~~p~ilV~NK~D 314 (484)
.++..++++++|+|.+.+.. ... ..++..+.....+.|+++|+||+|
T Consensus 75 -------------------------------~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~D 123 (184)
T 2zej_A 75 -------------------------------HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLD 123 (184)
T ss_dssp -------------------------------HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGG
T ss_pred -------------------------------HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCC
Confidence 34567899999999876521 111 122233333335789999999999
Q ss_pred CCchhhhh-----h-HHHH-hcCCC----ceeeecccCC-CCchhhHHHHHHhhh
Q 011511 315 SPRKGIMQ-----V-SEFW-SLGFS----PLPISAISGT-GTGELLDLVCSELKK 357 (484)
Q Consensus 315 l~~~~~~~-----~-~~~~-~~~~~----~i~vSa~~g~-gi~~L~~~i~~~l~~ 357 (484)
+....... . ..+. ..+++ ++++||+++. |+.+|++.+.+.+..
T Consensus 124 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 124 VSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp GCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred cccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 97643221 1 1111 13455 7899999997 999999998877654
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.62 E-value=3.6e-16 Score=163.02 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=88.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee---------------e------ecCCCceeeeeEEEEEeCCceeeEeecccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI---------------V------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~---------------~------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
.++|+|+|++|+|||||+|+|++..... . ....+.|.......+.+.+..+.+|||||+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~ 92 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH 92 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence 5689999999999999999996211000 0 112455666666777888999999999998
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011511 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
.++. ..+..++..+|.+|+|+|+..+.......++..+...
T Consensus 93 ~df~--------------------------------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~- 133 (528)
T 3tr5_A 93 ADFT--------------------------------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR- 133 (528)
T ss_dssp TTCC--------------------------------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT-
T ss_pred hhHH--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-
Confidence 6533 2344677889999999999988877777777766665
Q ss_pred CCCeEEEEecccCCCc
Q 011511 302 MDKFIILAVNKCESPR 317 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~~ 317 (484)
+.|+++|+||+|+..
T Consensus 134 -~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 134 -HTPIMTFINKMDRDT 148 (528)
T ss_dssp -TCCEEEEEECTTSCC
T ss_pred -CCCEEEEEeCCCCcc
Confidence 899999999999864
No 152
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=9.5e-16 Score=160.04 Aligned_cols=155 Identities=20% Similarity=0.184 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
..++|+|+|.+|||||||+|+|++.... .. ..|.......+.+.+..+.+|||||...+.....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~--~~--~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~------------ 384 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV--TT--IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWR------------ 384 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC--CC--CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGG------------
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC--Cc--CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHH------------
Confidence 3579999999999999999999987632 22 2356666677778889999999999765443221
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHh-hcCCCeEEEEecccCCCch
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRK-NYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~-~~~~~p~ilV~NK~Dl~~~ 318 (484)
.++..+|++|+|+|+..+...... .+...+.. ...+.|+++|+||+|+...
T Consensus 385 --------------------------~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 385 --------------------------HYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA 438 (497)
T ss_dssp --------------------------GGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC
T ss_pred --------------------------HHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC
Confidence 445789999999998765332221 22222221 1247899999999999764
Q ss_pred hhhhh-HHHHh------cCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 319 GIMQV-SEFWS------LGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 319 ~~~~~-~~~~~------~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
..... ..... .+++++++||++|.|+++++++|.+.+.+.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~ 485 (497)
T 3lvq_E 439 MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSK 485 (497)
T ss_dssp CCHHHHHHHTTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC--
T ss_pred CCHHHHHHHhchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 22111 11111 123589999999999999999999877543
No 153
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.60 E-value=1.8e-15 Score=153.46 Aligned_cols=158 Identities=15% Similarity=0.079 Sum_probs=103.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCcee--------------ee-----eEEEEEeCCceeeEeecccc
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR--------------DR-----MYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~--------------~~-----~~~~~~~~~~~i~liDtpG~ 221 (484)
...++|+++|++|+|||||+|+|++............+. .. ...........+.+|||||+
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 457899999999999999999999853211000000000 00 00000011256899999997
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-CcccHHHHHHHHhh
Q 011511 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADWLRKN 300 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-~~~~~~~~~~l~~~ 300 (484)
..+. +.....+..+|++++|+|+..+. .....+++..+...
T Consensus 86 ~~~~--------------------------------------~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~ 127 (403)
T 3sjy_A 86 EVLM--------------------------------------ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII 127 (403)
T ss_dssp GGGH--------------------------------------HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH
T ss_pred HHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc
Confidence 5421 34556778899999999998876 44445555555443
Q ss_pred cCCCeEEEEecccCCCchhhhhh-----HHHHh----cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 301 YMDKFIILAVNKCESPRKGIMQV-----SEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 301 ~~~~p~ilV~NK~Dl~~~~~~~~-----~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
..+|+++|+||+|+........ ..+.. .+.+++++||++|.|+++|++.+.+.+..
T Consensus 128 -~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 128 -GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp -TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred -CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 2468999999999987542211 11111 25579999999999999999999887653
No 154
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=1.6e-15 Score=149.62 Aligned_cols=153 Identities=17% Similarity=0.123 Sum_probs=106.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCcee--eEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF--MLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i--~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|.+|+|||||++++++... ...+.+++.......+.+++..+ .+|||||...+.....
T Consensus 155 ~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~----------- 221 (332)
T 2wkq_A 155 LIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRP----------- 221 (332)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGG-----------
T ss_pred eeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHH-----------
Confidence 57899999999999999999996542 33445555555555566666554 5999999876543322
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH--HHHHHHHhhcCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE--EIADWLRKNYMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~--~~~~~l~~~~~~~p~ilV~NK~Dl~~~ 318 (484)
.++..+|++++|+|+..+.+.... .+...+.....+.|+++|+||+|+...
T Consensus 222 ---------------------------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 222 ---------------------------LSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274 (332)
T ss_dssp ---------------------------GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTC
T ss_pred ---------------------------HhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccc
Confidence 345789999999998765433332 234445554458999999999998543
Q ss_pred hh---------------hhhHHH-HhcCC-CceeeecccCCCCchhhHHHHHHh
Q 011511 319 GI---------------MQVSEF-WSLGF-SPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~---------------~~~~~~-~~~~~-~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
.. .....+ ...++ +++++||++|.|+++++..+.+.+
T Consensus 275 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 275 KDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 11 001111 22354 789999999999999999988765
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.59 E-value=5.5e-15 Score=150.31 Aligned_cols=156 Identities=21% Similarity=0.165 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee--eecCCCceeeeeEEEEEeC-----------------------CceeeEee
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWG-----------------------EHEFMLVD 217 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~-----------------------~~~i~liD 217 (484)
.++|+++|++++|||||+++|+|..... ....++.|.........+. ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 5799999999999999999999753211 1223455554443322220 15689999
Q ss_pred ccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-CcccHHHHHH
Q 011511 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIADW 296 (484)
Q Consensus 218 tpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-~~~~~~~~~~ 296 (484)
|||+.++. ......+..+|++|+|+|+..+. ..+..+.+..
T Consensus 90 tPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~ 131 (410)
T 1kk1_A 90 APGHEALM--------------------------------------TTMLAGASLMDGAILVIAANEPCPRPQTREHLMA 131 (410)
T ss_dssp CSSHHHHH--------------------------------------HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH
T ss_pred CCChHHHH--------------------------------------HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH
Confidence 99985421 33445567899999999998875 4455555555
Q ss_pred HHhhcCCCeEEEEecccCCCchhhh-----hhHHHHh----cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 297 LRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 297 l~~~~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
+... ...|+++|+||+|+...... +...+.. .+++++++||++|.|+++|++.|...++.
T Consensus 132 ~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 132 LQII-GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHc-CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 5443 24579999999999864321 1122222 35689999999999999999999887653
No 156
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=7.5e-15 Score=142.74 Aligned_cols=165 Identities=22% Similarity=0.283 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcce-----eeecCCC----------------------ceeee------------
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRDR------------ 201 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~~------------ 201 (484)
...++|+++|.+|||||||+|+|+|.... .+...|+ +|...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999998643 2222332 22110
Q ss_pred -----------eEEEEEe-CCceeeEeeccccccccC--CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHH
Q 011511 202 -----------MYGRSFW-GEHEFMLVDTGGVLNVSK--SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (484)
Q Consensus 202 -----------~~~~~~~-~~~~i~liDtpG~~~~~~--~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~ 267 (484)
..-.+.. ....+.+|||||+..... ..... ...+...+.
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~---------------------------~~~~~~~~~ 156 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDI---------------------------EFQIRDMLM 156 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTH---------------------------HHHHHHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchH---------------------------HHHHHHHHH
Confidence 0001111 136799999999875321 01110 011224455
Q ss_pred HHhhhcCeEE-EEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhh--hhhHHH--Hh--cCC-Cceeeec
Q 011511 268 AAIEESCVII-FLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WS--LGF-SPLPISA 338 (484)
Q Consensus 268 ~~~~~~d~vi-lVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~--~~--~~~-~~i~vSa 338 (484)
.++..++.++ +|+|+..+....+. .+...+.. .+.|+++|+||+|+..... ...... .. .++ +++++||
T Consensus 157 ~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA 234 (299)
T 2aka_B 157 QFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 234 (299)
T ss_dssp HHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCC
T ss_pred HHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCCh
Confidence 6667777665 79998876655543 34444433 3789999999999976432 111111 11 122 5788999
Q ss_pred ccCCCCchhhHHHHHH
Q 011511 339 ISGTGTGELLDLVCSE 354 (484)
Q Consensus 339 ~~g~gi~~L~~~i~~~ 354 (484)
++|.|++++++.+.+.
T Consensus 235 ~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 235 KDIDGKKDITAALAAE 250 (299)
T ss_dssp BCTTSCBCHHHHHHHH
T ss_pred hhccccccHHHHHHHH
Confidence 9999999999998764
No 157
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=9.4e-15 Score=149.62 Aligned_cols=145 Identities=22% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeee----------cC----------------------CCceeeeeEEEEEeCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV----------DE----------------------PGVTRDRMYGRSFWGE 210 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~----------~~----------------------~~~t~~~~~~~~~~~~ 210 (484)
.++|+++|++|+|||||+|+|++....... .. .+.|.+.....+...+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~ 103 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAK 103 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSS
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCC
Confidence 579999999999999999999864311111 01 2344444444556677
Q ss_pred ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCccc
Q 011511 211 HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (484)
Q Consensus 211 ~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~ 290 (484)
..+.+|||||+.++. +.....+..+|++|+|+|+..+.....
T Consensus 104 ~~~~iiDtpGh~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~g~~~qt 145 (434)
T 1zun_B 104 RKFIIADTPGHEQYT--------------------------------------RNMATGASTCDLAIILVDARYGVQTQT 145 (434)
T ss_dssp EEEEEEECCCSGGGH--------------------------------------HHHHHHHTTCSEEEEEEETTTCSCHHH
T ss_pred ceEEEEECCChHHHH--------------------------------------HHHHHHHhhCCEEEEEEECCCCCcHHH
Confidence 889999999986421 233456789999999999988876666
Q ss_pred HHHHHHHHhhcCCC-eEEEEecccCCCch--hhh----hh-HHH-HhcC-----CCceeeecccCCCCchh
Q 011511 291 EEIADWLRKNYMDK-FIILAVNKCESPRK--GIM----QV-SEF-WSLG-----FSPLPISAISGTGTGEL 347 (484)
Q Consensus 291 ~~~~~~l~~~~~~~-p~ilV~NK~Dl~~~--~~~----~~-~~~-~~~~-----~~~i~vSa~~g~gi~~L 347 (484)
.+++..+... +. ++++|+||+|+... ... .. ..+ ...+ ++++++||++|.|+.++
T Consensus 146 ~~~l~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 146 RRHSYIASLL--GIKHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHT--TCCEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHc--CCCeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 6655555443 44 68999999999762 111 11 111 1234 46899999999999884
No 158
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.58 E-value=7.7e-15 Score=149.09 Aligned_cols=157 Identities=18% Similarity=0.106 Sum_probs=98.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee--eecCCCceeeeeEEEEEe---------------C--------CceeeEe
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFW---------------G--------EHEFMLV 216 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~---------------~--------~~~i~li 216 (484)
..++|+++|+.++|||||+++|+|..... ....++.|.........+ . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 46899999999999999999999763211 122345555443322211 1 1568999
Q ss_pred eccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-CcccHHHHH
Q 011511 217 DTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL-TAADEEIAD 295 (484)
Q Consensus 217 DtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~-~~~~~~~~~ 295 (484)
||||+..+. ......+..+|++|+|+|+.++. ..+..+.+.
T Consensus 87 DtPGh~~f~--------------------------------------~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~ 128 (408)
T 1s0u_A 87 DSPGHETLM--------------------------------------ATMLSGASLMDGAILVIAANEPCPQPQTKEHLM 128 (408)
T ss_dssp ECSSHHHHH--------------------------------------HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH
T ss_pred ECCCHHHHH--------------------------------------HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH
Confidence 999985421 22334456789999999998775 444445555
Q ss_pred HHHhhcCCCeEEEEecccCCCchhhh-----hhHHHHh----cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 296 WLRKNYMDKFIILAVNKCESPRKGIM-----QVSEFWS----LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 296 ~l~~~~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~----~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
.+... ...|+++|+||+|+...... +...+.. .+++++++||++|.|+++|++.|...++.
T Consensus 129 ~~~~l-~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 129 ALEIL-GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHT-TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHc-CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 44432 23579999999999764321 1122222 25689999999999999999999887653
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.58 E-value=6e-15 Score=153.08 Aligned_cols=147 Identities=21% Similarity=0.211 Sum_probs=99.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc------------------------------eeeecCCCceeeeeEEEEEeCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNR------------------------------AIVVDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~------------------------------~~~~~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|++|+|||||+|+|++... .......|.|.+.....+...+.
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 367999999999999999999975411 11122346777777777778888
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC----
Q 011511 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT---- 287 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~---- 287 (484)
.+.+|||||+.++. +.....+..+|++|+|+|+..+..
T Consensus 112 ~~~iiDTPG~~~f~--------------------------------------~~~~~~~~~aD~~llVvDa~~g~~~~~~ 153 (483)
T 3p26_A 112 NFTIVDAPGHRDFV--------------------------------------PNAIMGISQADMAILCVDCSTNAFESGF 153 (483)
T ss_dssp EEEEECCCCCGGGH--------------------------------------HHHHHHHTTCSEEEEEEECCC------C
T ss_pred eEEEEECCCcHHHH--------------------------------------HHHHHhhhhCCEEEEEEECCCCcccccc
Confidence 99999999996421 445577889999999999987632
Q ss_pred ---cccHHHHHHHHhhcCCCeEEEEecccCCCchhh--hh----h-HHHH-hc-----CCCceeeecccCCCCchh
Q 011511 288 ---AADEEIADWLRKNYMDKFIILAVNKCESPRKGI--MQ----V-SEFW-SL-----GFSPLPISAISGTGTGEL 347 (484)
Q Consensus 288 ---~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~----~-~~~~-~~-----~~~~i~vSa~~g~gi~~L 347 (484)
....+....+... ...|+++|+||+|+..... .. . ..+. .. +.+++++||++|.|+.++
T Consensus 154 ~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 154 DLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred chhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 2333444444433 2356999999999976211 11 1 1111 11 346899999999999864
No 160
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.57 E-value=1.1e-14 Score=153.74 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=105.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe------------------CCceeeEeecccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW------------------GEHEFMLVDTGGVLN 223 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~------------------~~~~i~liDtpG~~~ 223 (484)
+.++|+++|++|+|||||+++|++..... ....+.|.+.......+ ....+++|||||+..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~-~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVAS-REAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSC-C----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcc-ccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 46899999999999999999999754211 11113333322222211 112489999999987
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011511 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+..... ..+..+|++|+|+|+.++......+.+..+... +
T Consensus 83 F~~~~~--------------------------------------r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~--~ 122 (594)
T 1g7s_A 83 FTTLRK--------------------------------------RGGALADLAILIVDINEGFKPQTQEALNILRMY--R 122 (594)
T ss_dssp CTTSBC--------------------------------------SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT--T
T ss_pred HHHHHH--------------------------------------HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc--C
Confidence 654432 234678999999999988777777777777664 8
Q ss_pred CeEEEEecccCCCchhh------------------hh--------hH-HHHhc---------------CCCceeeecccC
Q 011511 304 KFIILAVNKCESPRKGI------------------MQ--------VS-EFWSL---------------GFSPLPISAISG 341 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~------------------~~--------~~-~~~~~---------------~~~~i~vSa~~g 341 (484)
.|+++|+||+|+..... .. .. .+... .++++++||++|
T Consensus 123 vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG 202 (594)
T 1g7s_A 123 TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITG 202 (594)
T ss_dssp CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTC
T ss_pred CeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCC
Confidence 99999999999864210 00 00 01111 127899999999
Q ss_pred CCCchhhHHHHHHhhh
Q 011511 342 TGTGELLDLVCSELKK 357 (484)
Q Consensus 342 ~gi~~L~~~i~~~l~~ 357 (484)
.|+++|++++..+++.
T Consensus 203 ~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 203 EGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHhhccc
Confidence 9999999999887653
No 161
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.57 E-value=6.4e-15 Score=154.99 Aligned_cols=156 Identities=25% Similarity=0.341 Sum_probs=103.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceee--------e------cCCCceeeeeEEEEEeC---C--ceeeEeecccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIV--------V------DEPGVTRDRMYGRSFWG---E--HEFMLVDTGGVLN 223 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~--------~------~~~~~t~~~~~~~~~~~---~--~~i~liDtpG~~~ 223 (484)
.++|+++|+.|+|||||+++|+....... . ...+.|.......+.+. + ..+++|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 56899999999999999999975311110 0 11234443333333332 2 4688999999976
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011511 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ......+..+|.+|+|+|+..+........+..+... +
T Consensus 86 F~--------------------------------------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~--~ 125 (600)
T 2ywe_A 86 FS--------------------------------------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ--D 125 (600)
T ss_dssp GH--------------------------------------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT--T
T ss_pred HH--------------------------------------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC--C
Confidence 32 2334567889999999999988776665555544443 8
Q ss_pred CeEEEEecccCCCchhhhhhHH-HH-hcCC---CceeeecccCCCCchhhHHHHHHhhhc
Q 011511 304 KFIILAVNKCESPRKGIMQVSE-FW-SLGF---SPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~~~~-~~-~~~~---~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
.|+++|+||+|+.......... +. ..++ +++++||++|.|+++|++.+.+.++..
T Consensus 126 ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 126 LVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp CEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred CCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 9999999999997643222211 11 1244 479999999999999999999887643
No 162
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=1.4e-14 Score=132.12 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=103.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc--eeeEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH--EFMLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+++|++|||||||+++|+|..... ...+..+.....+.+.+++. .+.+|||||.........
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~----------- 72 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITS----------- 72 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC----CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCH-----------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhH-----------
Confidence 4689999999999999999999875322 11233333444556677775 467899999865433221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..++.+++|+|.....+.... .+...+... ..+.|+++|+||+|+...
T Consensus 73 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 125 (199)
T 2f9l_A 73 ---------------------------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125 (199)
T ss_dssp ---------------------------HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred ---------------------------HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 334678999999997654333222 222223322 236899999999998653
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... .... ....++.++.+||+++.|+.++++.+.+.+.+
T Consensus 126 ~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 211 1111 22356678899999999999999999887654
No 163
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=7.9e-15 Score=146.53 Aligned_cols=142 Identities=18% Similarity=0.160 Sum_probs=105.2
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011511 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
+|+++|++++|||||+++|+ ..+.|.+.....+.+.+..+.+|||||+.++.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~------------------- 74 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTL------------------- 74 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCH-------------------
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHH-------------------
Confidence 89999999999999999998 22345555555667778889999999986521
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeE-EEEec-ccCCCchhhhh
Q 011511 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFI-ILAVN-KCESPRKGIMQ 322 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~-ilV~N-K~Dl~~~~~~~ 322 (484)
......+..+|++|+|+| ..+...+..+++..+... +.|. ++|+| |+|+ ......
T Consensus 75 -------------------~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~ 131 (370)
T 2elf_A 75 -------------------KSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAID 131 (370)
T ss_dssp -------------------HHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHH
T ss_pred -------------------HHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHH
Confidence 334466788999999999 776666666666655554 6777 88999 9999 543211
Q ss_pred -----hHHHHh----cCCCcee--eeccc---CCCCchhhHHHHHHhhh
Q 011511 323 -----VSEFWS----LGFSPLP--ISAIS---GTGTGELLDLVCSELKK 357 (484)
Q Consensus 323 -----~~~~~~----~~~~~i~--vSa~~---g~gi~~L~~~i~~~l~~ 357 (484)
...+.. ..+++++ +||++ +.|+++|++.|.+.++.
T Consensus 132 ~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 132 ELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 111211 1357899 99999 99999999999887654
No 164
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.56 E-value=4.4e-15 Score=150.75 Aligned_cols=155 Identities=17% Similarity=0.122 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCc--------ceee--------ecCCCceeeeeEEEEEeCCceeeEeecccccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGN--------RAIV--------VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~--------~~~~--------~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
..++|+++|++|+|||||+++|++.. .... ....+.|.......+...+..+.+|||||+.++.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 35799999999999999999998731 0000 0124556655555556667889999999987521
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011511 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
+.....+..+|++|+|+|+..+......+++..+... +.|
T Consensus 90 --------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~--~ip 129 (405)
T 2c78_A 90 --------------------------------------KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV--GVP 129 (405)
T ss_dssp --------------------------------------HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT--TCC
T ss_pred --------------------------------------HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCC
Confidence 3344667889999999999888766666666666554 778
Q ss_pred -EEEEecccCCCc-hhhhh-----hHHHH-hc-----CCCceeeecccCCC------------------CchhhHHHHHH
Q 011511 306 -IILAVNKCESPR-KGIMQ-----VSEFW-SL-----GFSPLPISAISGTG------------------TGELLDLVCSE 354 (484)
Q Consensus 306 -~ilV~NK~Dl~~-~~~~~-----~~~~~-~~-----~~~~i~vSa~~g~g------------------i~~L~~~i~~~ 354 (484)
+++|+||+|+.. ..... ...+. .. ..+++++||++|.| +.+|++.+..+
T Consensus 130 ~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~ 209 (405)
T 2c78_A 130 YIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEY 209 (405)
T ss_dssp CEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhh
Confidence 889999999974 22111 11111 22 25789999999987 66777777776
Q ss_pred hh
Q 011511 355 LK 356 (484)
Q Consensus 355 l~ 356 (484)
++
T Consensus 210 lp 211 (405)
T 2c78_A 210 IP 211 (405)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 165
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.55 E-value=7e-15 Score=144.95 Aligned_cols=143 Identities=22% Similarity=0.281 Sum_probs=95.6
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHh-hcCCCeEEEEecccCCCchhhh----hh-HHHHhcCCCceeeecccCCC
Q 011511 270 IEESCVIIFLVDGQAGLTAADEEIADWLRK-NYMDKFIILAVNKCESPRKGIM----QV-SEFWSLGFSPLPISAISGTG 343 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~-~~~~~p~ilV~NK~Dl~~~~~~----~~-~~~~~~~~~~i~vSa~~g~g 343 (484)
+.++|.+++| ++..|..... .+.++|.. ...+++++||+||+|+.+.... .. ..|...+++++.+||.++.|
T Consensus 128 ~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~g 205 (358)
T 2rcn_A 128 AANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDG 205 (358)
T ss_dssp EECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBT
T ss_pred HhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcC
Confidence 5789999876 5556654443 34445432 1137899999999999875431 12 23446789999999999999
Q ss_pred CchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcc-eeecCCC---C----ceecccceeee
Q 011511 344 TGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDR-TIVSPIS---G----TTRDAIDTEFT 415 (484)
Q Consensus 344 i~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~-~~~~~~~---g----tt~~~~~~~~~ 415 (484)
+++|...+ .+..++++|+||+|||||+|+|+|... ..++.+. | +|+... ...
T Consensus 206 l~~L~~~~------------------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~--i~~ 265 (358)
T 2rcn_A 206 LKPLEEAL------------------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAAR--LYH 265 (358)
T ss_dssp HHHHHHHH------------------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCE--EEE
T ss_pred HHHHHHhc------------------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEE--EEE
Confidence 88776643 135799999999999999999999876 6666553 3 333322 122
Q ss_pred cCCCCcEEEEEcCCCccCccc
Q 011511 416 GPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 416 ~~~g~~i~liDTPG~~~~~~~ 436 (484)
... ...++||||+++..++
T Consensus 266 v~q--~~~l~dtpgv~e~~l~ 284 (358)
T 2rcn_A 266 FPH--GGDVIDSPGVREFGLW 284 (358)
T ss_dssp CTT--SCEEEECHHHHTCCCC
T ss_pred ECC--CCEecCcccHHHhhhc
Confidence 222 2378999999886543
No 166
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.55 E-value=1.7e-14 Score=141.32 Aligned_cols=170 Identities=24% Similarity=0.251 Sum_probs=101.1
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcc-----eeeecCC---Cceeee-------------------------------
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNR-----AIVVDEP---GVTRDR------------------------------- 201 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~-----~~~~~~~---~~t~~~------------------------------- 201 (484)
...++|+++|.+|+|||||+|+|+|... ..+...+ .++...
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 3578999999999999999999999864 2222333 111110
Q ss_pred -------------------eEEE-EEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHH
Q 011511 202 -------------------MYGR-SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSM 261 (484)
Q Consensus 202 -------------------~~~~-~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~ 261 (484)
..-. ....+..+.+|||||+........ -..+...
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~-------------------------~~~~~~~ 156 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQ-------------------------PTDIEQQ 156 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------------------------------CSHHH
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCC-------------------------chhHHHH
Confidence 0000 111345799999999864221000 0011122
Q ss_pred HHHHHHHHhhhcCeEEEEeeC-CCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhh--hhhHHH--HhcCCC---
Q 011511 262 IERQATAAIEESCVIIFLVDG-QAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF--WSLGFS--- 332 (484)
Q Consensus 262 ~~~~~~~~~~~~d~vilVvD~-~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~--~~~~~~--- 332 (484)
+...+..++..+|++++|+|+ ..+....+. .+..++... +.|+++|+||+|+..... ...... ...+..
T Consensus 157 ~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~--~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 234 (315)
T 1jwy_B 157 IRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPE--GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIG 234 (315)
T ss_dssp HHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSS--CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEE
T ss_pred HHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCC--CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEE
Confidence 345677888999999999996 445444443 556665543 789999999999976432 111111 111123
Q ss_pred ceeeeccc---CCCCchhhHHHHHHhhh
Q 011511 333 PLPISAIS---GTGTGELLDLVCSELKK 357 (484)
Q Consensus 333 ~i~vSa~~---g~gi~~L~~~i~~~l~~ 357 (484)
++.+|+.+ +.|+.++++.+.++++.
T Consensus 235 v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 235 VINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred EecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 34456666 78888999988887764
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.55 E-value=9.9e-15 Score=147.70 Aligned_cols=154 Identities=17% Similarity=0.155 Sum_probs=107.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcc----e-----------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNR----A-----------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKS 227 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~----~-----------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~ 227 (484)
.++|+++|++|+|||||+++|++... . ......+.|.......+...+..+.+|||||+.++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~-- 80 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV-- 80 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH--
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH--
Confidence 46899999999999999999986310 0 011134556665554555567889999999986421
Q ss_pred CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-E
Q 011511 228 QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-I 306 (484)
Q Consensus 228 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ 306 (484)
......+..+|++|+|+|+..+...+..+.+..+... +.| +
T Consensus 81 ------------------------------------~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~--~vp~i 122 (397)
T 1d2e_A 81 ------------------------------------KNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI--GVEHV 122 (397)
T ss_dssp ------------------------------------HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCCCE
T ss_pred ------------------------------------HHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCeE
Confidence 2344567789999999999887766666666655554 778 6
Q ss_pred EEEecccCCCc-hhhh-----hhHHHH-hcC-----CCceeeecccCCC----------CchhhHHHHHHhh
Q 011511 307 ILAVNKCESPR-KGIM-----QVSEFW-SLG-----FSPLPISAISGTG----------TGELLDLVCSELK 356 (484)
Q Consensus 307 ilV~NK~Dl~~-~~~~-----~~~~~~-~~~-----~~~i~vSa~~g~g----------i~~L~~~i~~~l~ 356 (484)
++|+||+|+.. .... +...+. ..+ ++++++||++|.| +.+|++.+.++++
T Consensus 123 ivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 123 VVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp EEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 89999999974 2211 111121 222 5789999999764 6788888877665
No 168
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=1.2e-15 Score=153.61 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=49.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe---------------------C---CceeeEeecc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW---------------------G---EHEFMLVDTG 219 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~---~~~i~liDtp 219 (484)
++|+|+|.+|||||||+|+|++.. ..+++++++|.....+...+ . ..++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999987 67788899998877765332 2 2468999999
Q ss_pred ccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC
Q 011511 220 GVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG 285 (484)
Q Consensus 220 G~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~ 285 (484)
|+.........+ ...+...+..+|++++|+|+..+
T Consensus 80 G~~~~a~~~~~l-------------------------------~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGL-------------------------------GNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ----------------------------------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhH-------------------------------HHHHHHHHhcCCEEEEEEecccc
Confidence 986432211111 12223456789999999998764
No 169
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.53 E-value=4.5e-14 Score=134.70 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|++|+|||||+|+|++.........+++|.......+.+.+..+.+|||||+..+......+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~---------- 105 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQAL---------- 105 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHH----------
Confidence 5799999999999999999999987666777888888888888888999999999999987554332221
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHHh--hhcCeEEEEeeCCCC-CCcccHHHHHHHHhhcC---CCeEEEEecccCCC
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAAI--EESCVIIFLVDGQAG-LTAADEEIADWLRKNYM---DKFIILAVNKCESP 316 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~~--~~~d~vilVvD~~~~-~~~~~~~~~~~l~~~~~---~~p~ilV~NK~Dl~ 316 (484)
+.+...+ ..+|++++|++.... +...+..++..+...+. ..|+++|+||+|+.
T Consensus 106 ---------------------~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 106 ---------------------ELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred ---------------------HHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 1111111 368999999876542 33444556666665432 24899999999986
Q ss_pred c
Q 011511 317 R 317 (484)
Q Consensus 317 ~ 317 (484)
.
T Consensus 165 ~ 165 (262)
T 3def_A 165 P 165 (262)
T ss_dssp C
T ss_pred C
Confidence 4
No 170
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.53 E-value=5.7e-14 Score=134.64 Aligned_cols=126 Identities=13% Similarity=0.152 Sum_probs=90.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIG 242 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 242 (484)
.++|+++|.+|+|||||+|+|++.....++..+++|.......+...+..+.+|||||+.........+.
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~---------- 108 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMAL---------- 108 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHH----------
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHH----------
Confidence 5799999999999999999999987666777788888777777778888999999999976543222111
Q ss_pred cCCCchhHHHHHHhhchHHHHHHHHHH--hhhcCeEEEEeeCCC-CCCcccHHHHHHHHhhcCC---CeEEEEecccCCC
Q 011511 243 MEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQA-GLTAADEEIADWLRKNYMD---KFIILAVNKCESP 316 (484)
Q Consensus 243 ~~G~~~~~~~~~v~~~~~~~~~~~~~~--~~~~d~vilVvD~~~-~~~~~~~~~~~~l~~~~~~---~p~ilV~NK~Dl~ 316 (484)
+.+..+ ...+|++++|+|... .+...+..++..+...+.. .|+++|+||+|+.
T Consensus 109 ---------------------~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 109 ---------------------NIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp ---------------------HHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred ---------------------HHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 111111 236899999987644 2333444566666554322 6999999999987
Q ss_pred chh
Q 011511 317 RKG 319 (484)
Q Consensus 317 ~~~ 319 (484)
+..
T Consensus 168 ~~~ 170 (270)
T 1h65_A 168 PPD 170 (270)
T ss_dssp CGG
T ss_pred CcC
Confidence 543
No 171
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.53 E-value=2.2e-14 Score=150.83 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=96.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee-eecCCCceeeeeE----EEEEe----CCceeeEeeccccccccCCCchhh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-VVDEPGVTRDRMY----GRSFW----GEHEFMLVDTGGVLNVSKSQPNIM 232 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-~~~~~~~t~~~~~----~~~~~----~~~~i~liDtpG~~~~~~~~~~~~ 232 (484)
...||+++|.+|||||||+|+|++..... ..++.+.+..... +.+.+ .+..+.+|||||...+.....
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~--- 116 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ--- 116 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH---
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH---
Confidence 46899999999999999999999875311 1111111111000 00111 246799999999765443322
Q ss_pred hhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecc
Q 011511 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNK 312 (484)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK 312 (484)
..+..+|++|+|+|++.. .....+...+.....+.|+++|+||
T Consensus 117 -----------------------------------~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK 159 (535)
T 3dpu_A 117 -----------------------------------FFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNK 159 (535)
T ss_dssp -----------------------------------HHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECC
T ss_pred -----------------------------------HHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEEC
Confidence 335679999999998653 2334455666665457999999999
Q ss_pred cCCCchhhhhh---H-HHHhcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 313 CESPRKGIMQV---S-EFWSLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 313 ~Dl~~~~~~~~---~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
+|+........ . .+...+.+++++||++|.|+++++..+.+.+...
T Consensus 160 ~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 160 IDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp TTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred CCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 99976432111 1 1223466799999999999999999998877543
No 172
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.52 E-value=3.4e-14 Score=138.08 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=85.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
..|+++|.+|+|||||+|+|+|.+...++..++||++.+..... .++.++.+|||||+.++. ..........+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~-~~~~~l~l~DTpG~~~~~------~~l~~~~~~~~ 80 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPM------DALGEFMDQEV 80 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCC------SHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE-eCCcEEEEecCccccchh------hHHHHHHHHHH
Confidence 47999999999999999999999887788889999987654443 457789999999997642 23444456667
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 452 FRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
...++.+|++++|+|+..+++..+.++++++
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l 111 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARAL 111 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHH
Confidence 7788999999999999999999999887654
No 173
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.50 E-value=2.7e-14 Score=146.19 Aligned_cols=147 Identities=23% Similarity=0.265 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceee------------------------------ecCCCceeeeeEEEEEeCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIV------------------------------VDEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~------------------------------~~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|++|+|||||+++|++...... ....+.|.......+...+.
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 357999999999999999999985411110 01345666665556677788
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCC------
Q 011511 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAG------ 285 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~------ 285 (484)
.+.+|||||+.++. ......+..+|++|+|+|+..+
T Consensus 85 ~~~iiDtpG~~~f~--------------------------------------~~~~~~~~~aD~~ilVvDa~~gsfe~~~ 126 (435)
T 1jny_A 85 FFTIIDAPGHRDFV--------------------------------------KNMITGASQADAAILVVSAKKGEYEAGM 126 (435)
T ss_dssp EEEECCCSSSTTHH--------------------------------------HHHHHTSSCCSEEEEEEECSTTHHHHHH
T ss_pred EEEEEECCCcHHHH--------------------------------------HHHHhhhhhcCEEEEEEECCCCcccccc
Confidence 99999999986522 2344567889999999999875
Q ss_pred -CCcccHHHHHHHHhhcCCC-eEEEEecccCCCch----hh----hh-hHHHH-hcC-----CCceeeecccCCCCchhh
Q 011511 286 -LTAADEEIADWLRKNYMDK-FIILAVNKCESPRK----GI----MQ-VSEFW-SLG-----FSPLPISAISGTGTGELL 348 (484)
Q Consensus 286 -~~~~~~~~~~~l~~~~~~~-p~ilV~NK~Dl~~~----~~----~~-~~~~~-~~~-----~~~i~vSa~~g~gi~~L~ 348 (484)
...+..+....+... +. ++++|+||+|+... .. .. ...+. ..+ .+++++||++|.|+.++.
T Consensus 127 ~~~~qt~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 127 SVEGQTREHIILAKTM--GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp STTCHHHHHHHHHHHT--TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccchHHHHHHHHHHHc--CCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 333444444444443 44 68999999999762 11 11 11111 223 568999999999997553
No 174
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.50 E-value=1.4e-14 Score=156.30 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeE--------------------------------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMY-------------------------------------- 203 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~-------------------------------------- 203 (484)
..++|+|+|.+|+|||||+|+|+|.....++..+++...+..
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 367999999999999999999999876666666655211000
Q ss_pred ---------------EEEEeCC----ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHH
Q 011511 204 ---------------GRSFWGE----HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIER 264 (484)
Q Consensus 204 ---------------~~~~~~~----~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~ 264 (484)
..+.+.. ..+.+|||||+...... ..
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~-----------------------------------~~ 192 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEAR-----------------------------------NE 192 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTC-----------------------------------HH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhH-----------------------------------HH
Confidence 0001111 46899999998753211 13
Q ss_pred HHHHHhhhcCeEEEEeeCCCCCCcccHHHHH-HHHhhcCCCeEEEEecccCCCchh----------------hhhhH-HH
Q 011511 265 QATAAIEESCVIIFLVDGQAGLTAADEEIAD-WLRKNYMDKFIILAVNKCESPRKG----------------IMQVS-EF 326 (484)
Q Consensus 265 ~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~-~l~~~~~~~p~ilV~NK~Dl~~~~----------------~~~~~-~~ 326 (484)
.+..++..+|++|+|+|+..+.+..+...+. .+.. .+.|+++|+||+|+.... ..... ..
T Consensus 193 ~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~ 270 (695)
T 2j69_A 193 LSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNAN 270 (695)
T ss_dssp HHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHH
Confidence 4556778899999999998776665544332 3332 267899999999987542 00000 00
Q ss_pred H----h------cCCCceeeecc--------------cCCCCchhhHHHHHHhh
Q 011511 327 W----S------LGFSPLPISAI--------------SGTGTGELLDLVCSELK 356 (484)
Q Consensus 327 ~----~------~~~~~i~vSa~--------------~g~gi~~L~~~i~~~l~ 356 (484)
. . ...+++++||+ ++.|+++++..+...+.
T Consensus 271 l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 271 LAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp HGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred HHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence 1 1 12367999999 99999999988877654
No 175
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.49 E-value=1.6e-13 Score=125.94 Aligned_cols=168 Identities=18% Similarity=0.211 Sum_probs=100.5
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCc-ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011511 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGN-RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
......+|+|+|++|||||||+|+|+|.. ...+.+.+|++.... .+.+.+ .+.++||||+........ ..+
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~-~~~---- 93 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEE-MKR---- 93 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEEET-TEEEEECCCCC------C-CHH----
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHH-HHH----
Confidence 33456789999999999999999999875 333455666665432 233333 688999999853211000 000
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCc
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~ 317 (484)
.+...+ ..+......++.+++++|+..+....+..+..++... +.|+++|.||+|+..
T Consensus 94 -------------------~~~~~~-~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~--~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 94 -------------------KWQRAL-GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS--NIAVLVLLTKADKLA 151 (210)
T ss_dssp -------------------HHHHHH-HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGSC
T ss_pred -------------------HHHHHH-HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEecccCCC
Confidence 000000 1112223568999999998877665554555666554 789999999999876
Q ss_pred hhhhh-----hHHHH-hc--CCCceeeecccCCCCchhhHHHHHHhh
Q 011511 318 KGIMQ-----VSEFW-SL--GFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 318 ~~~~~-----~~~~~-~~--~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....+ ...+. .. .+..+++||+++.|++++++.+.+...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 43211 11111 12 235689999999999999999988764
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.49 E-value=1.5e-14 Score=148.88 Aligned_cols=145 Identities=23% Similarity=0.247 Sum_probs=97.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee------------------------e------ecCCCceeeeeEEEEEeCCce
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------V------VDEPGVTRDRMYGRSFWGEHE 212 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~------------------------~------~~~~~~t~~~~~~~~~~~~~~ 212 (484)
.++|+++|++|+|||||+|+|++..... + ....+.|.+.....+...+..
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~ 86 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ 86 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence 5789999999999999999998531000 0 012466666666666777888
Q ss_pred eeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCc----
Q 011511 213 FMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTA---- 288 (484)
Q Consensus 213 i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~---- 288 (484)
+.+|||||+.++ .+.....+..+|++|+|+|+..+...
T Consensus 87 ~~iiDtPGh~~f--------------------------------------~~~~~~~~~~aD~~ilVvda~~g~~~~sf~ 128 (458)
T 1f60_A 87 VTVIDAPGHRDF--------------------------------------IKNMITGTSQADCAILIIAGGVGEFEAGIS 128 (458)
T ss_dssp EEEEECCCCTTH--------------------------------------HHHHHHSSSCCSEEEEEEECSHHHHHHHTC
T ss_pred EEEEECCCcHHH--------------------------------------HHHHHhhhhhCCEEEEEEeCCcCccccccC
Confidence 999999998532 13344667889999999998765321
Q ss_pred ---ccHHHHHHHHhhcCCCe-EEEEecccCCCc--hhhh----h-hHHH-HhcC-----CCceeeecccCCCCchh
Q 011511 289 ---ADEEIADWLRKNYMDKF-IILAVNKCESPR--KGIM----Q-VSEF-WSLG-----FSPLPISAISGTGTGEL 347 (484)
Q Consensus 289 ---~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~--~~~~----~-~~~~-~~~~-----~~~i~vSa~~g~gi~~L 347 (484)
+..+.+..+... +.| +++|+||+|+.. .... . ...+ ...+ ++++++||++|.|+.++
T Consensus 129 ~~~qt~~~~~~~~~~--~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 129 KDGQTREHALLAFTL--GVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTSHHHHHHHHHHHT--TCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cchhHHHHHHHHHHc--CCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 333444434332 665 899999999973 2111 1 1111 1122 57899999999998754
No 177
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.49 E-value=2e-13 Score=123.73 Aligned_cols=154 Identities=18% Similarity=0.181 Sum_probs=101.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCcee--eEeeccccccccCCCchhhhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEF--MLVDTGGVLNVSKSQPNIMEDLAITTT 240 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i--~liDtpG~~~~~~~~~~~~~~~~~~~~ 240 (484)
.++|+|+|++|||||||+++|++.... ....+..+.....+.+.+++..+ .+|||+|.........
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~-~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~----------- 96 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFN-LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITS----------- 96 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCC-CSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCH-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhH-----------
Confidence 579999999999999999999987532 12223333444556677777654 5699999865433221
Q ss_pred cccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH-HHHHHHHhh-cCCCeEEEEecccCCCch
Q 011511 241 IGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE-EIADWLRKN-YMDKFIILAVNKCESPRK 318 (484)
Q Consensus 241 ~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~-~~~~p~ilV~NK~Dl~~~ 318 (484)
..+..++.+++|+|.......... .+...+... ..+.|+++|+||+|+...
T Consensus 97 ---------------------------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~ 149 (191)
T 1oix_A 97 ---------------------------AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149 (191)
T ss_dssp ---------------------------HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred ---------------------------HHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 334668899999997653222221 122223322 236889999999998653
Q ss_pred hhh---hhHH-HHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 319 GIM---QVSE-FWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 319 ~~~---~~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
... .... ....++.++.+||+++.|+.++++.+.+.+
T Consensus 150 ~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 211 1111 223466788999999999999999987643
No 178
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.48 E-value=1.8e-14 Score=148.73 Aligned_cols=147 Identities=17% Similarity=0.224 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee------------------------ee------cCCCceeeeeEEEEEeCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI------------------------VV------DEPGVTRDRMYGRSFWGEH 211 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~------------------------~~------~~~~~t~~~~~~~~~~~~~ 211 (484)
..++|+++|++++|||||+++|++..... .. ...+.|.......+.+.+.
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~ 121 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR 121 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCe
Confidence 35799999999999999999987421000 00 1234555555455667788
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC-----
Q 011511 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL----- 286 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~----- 286 (484)
.+.+|||||+.++.. .....+..+|++|+|+|+..+.
T Consensus 122 ~~~iiDtPGh~~f~~--------------------------------------~~~~~~~~aD~~ilVvDa~~g~~e~sf 163 (467)
T 1r5b_A 122 RFSLLDAPGHKGYVT--------------------------------------NMINGASQADIGVLVISARRGEFEAGF 163 (467)
T ss_dssp EEEECCCCC-------------------------------------------------TTSCSEEEEEEECSTTHHHHTT
T ss_pred EEEEEECCCcHHHHH--------------------------------------HHHhhcccCCEEEEEEeCCcCcccccc
Confidence 899999999975432 2335568899999999998763
Q ss_pred --CcccHHHHHHHHhhcCCCe-EEEEecccCCCch----hhh-----hhHHHH-hc-------CCCceeeecccCCCCch
Q 011511 287 --TAADEEIADWLRKNYMDKF-IILAVNKCESPRK----GIM-----QVSEFW-SL-------GFSPLPISAISGTGTGE 346 (484)
Q Consensus 287 --~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~----~~~-----~~~~~~-~~-------~~~~i~vSa~~g~gi~~ 346 (484)
..+..+.+..+... +.| +++|+||+|+... ... +...+. .. .++++++||++|.|+.+
T Consensus 164 ~~~~qt~e~l~~~~~~--~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 164 ERGGQTREHAVLARTQ--GINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp STTCCHHHHHHHHHHT--TCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred CCCCcHHHHHHHHHHc--CCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 12334444444433 777 9999999999541 110 111111 22 34589999999999987
Q ss_pred hh
Q 011511 347 LL 348 (484)
Q Consensus 347 L~ 348 (484)
++
T Consensus 242 l~ 243 (467)
T 1r5b_A 242 RV 243 (467)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 179
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.48 E-value=1.1e-13 Score=144.27 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=81.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCccee---------------ee------cCCCceeeeeEEEEEeCCceeeEeecccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAI---------------VV------DEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~---------------~~------~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
.++|+++|++|+|||||+++|++..... +. ...+.|.......+.+.+..+.+|||||+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~ 92 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH 92 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence 5689999999999999999998532111 00 12344444445566778889999999999
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011511 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
.++. ..+..++..+|.+|+|+|+..+.......+...+...
T Consensus 93 ~df~--------------------------------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~- 133 (529)
T 2h5e_A 93 EDFS--------------------------------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR- 133 (529)
T ss_dssp TTCC--------------------------------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT-
T ss_pred hhHH--------------------------------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc-
Confidence 6532 2344667889999999999887665555555555443
Q ss_pred CCCeEEEEecccCCCc
Q 011511 302 MDKFIILAVNKCESPR 317 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~~ 317 (484)
+.|+++|+||+|+..
T Consensus 134 -~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 134 -DTPILTFMNKLDRDI 148 (529)
T ss_dssp -TCCEEEEEECTTSCC
T ss_pred -CCCEEEEEcCcCCcc
Confidence 789999999999864
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.47 E-value=1.1e-13 Score=149.30 Aligned_cols=117 Identities=18% Similarity=0.245 Sum_probs=85.2
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCccee-----------eec------CCCceeeeeEEEEEeCCceeeEeecccccc
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI-----------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----------~~~------~~~~t~~~~~~~~~~~~~~i~liDtpG~~~ 223 (484)
...++|+|+|++|+|||||+|+|++..... ..+ ..++|.......+.+.+..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 346799999999999999999998421110 111 245666666667788889999999999965
Q ss_pred ccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011511 224 VSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
+. ..+..++..+|.+|+|+|+..+........+..+... +
T Consensus 88 f~--------------------------------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~--~ 127 (693)
T 2xex_A 88 FT--------------------------------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTY--G 127 (693)
T ss_dssp CC--------------------------------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHT--T
T ss_pred hH--------------------------------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHc--C
Confidence 32 2344667889999999999888777776666666664 8
Q ss_pred CeEEEEecccCCCc
Q 011511 304 KFIILAVNKCESPR 317 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~ 317 (484)
.|+++|+||+|+..
T Consensus 128 ~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 128 VPRIVFVNKMDKLG 141 (693)
T ss_dssp CCEEEEEECTTSTT
T ss_pred CCEEEEEECCCccc
Confidence 99999999999864
No 181
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.47 E-value=1.2e-13 Score=144.63 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=88.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc---------------------ceeeecCCCceeeeeEEEEEeCCceeeEeecccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN---------------------RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 221 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~---------------------~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~ 221 (484)
.++|+|+|+.++|||||..+|+-.. .-......|.|.......+.|++..++++||||+
T Consensus 31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 5689999999999999999986110 0011123356666666778899999999999999
Q ss_pred ccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc
Q 011511 222 LNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY 301 (484)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~ 301 (484)
.+|. ..+.+.+..+|.+|+|+|+..+...+...+++.+.+.
T Consensus 111 vDF~--------------------------------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~- 151 (548)
T 3vqt_A 111 QDFS--------------------------------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR- 151 (548)
T ss_dssp GGCS--------------------------------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-
T ss_pred HHHH--------------------------------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-
Confidence 8754 3456888999999999999999999888888888876
Q ss_pred CCCeEEEEecccCCC
Q 011511 302 MDKFIILAVNKCESP 316 (484)
Q Consensus 302 ~~~p~ilV~NK~Dl~ 316 (484)
+.|+++++||+|..
T Consensus 152 -~lp~i~fINK~Dr~ 165 (548)
T 3vqt_A 152 -ATPVMTFVNKMDRE 165 (548)
T ss_dssp -TCCEEEEEECTTSC
T ss_pred -CCceEEEEecccch
Confidence 99999999999964
No 182
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.47 E-value=8.7e-14 Score=131.50 Aligned_cols=108 Identities=17% Similarity=0.115 Sum_probs=75.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-CceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|+|...+.+...+ |+|+........ .++..+.||||||+.+..... +.........
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~--~~~~~~~i~~ 97 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQVSK--TDPGCEERGH 97 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTHHH--HSTTSHHHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCCCc--HHHHHHHHHH
Confidence 468999999999999999999999887665444 577776555544 468899999999997653210 0112222334
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
....+.+++|++|+|+|+. +++.++.++++++
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l 129 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQV 129 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHH
Confidence 4445669999999999986 6999998887654
No 183
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.46 E-value=9.9e-14 Score=152.73 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=104.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc----e-----------eeecCCCceeeeeEEEEEeCCceeeEeeccccccccC
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNR----A-----------IVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSK 226 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~----~-----------~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~ 226 (484)
..++|+++|++++|||||+++|++... . ......|.|.......+...+..+.+|||||+.++.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~- 373 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV- 373 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH-
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH-
Confidence 457999999999999999999986310 0 001234555554444445567889999999997521
Q ss_pred CCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-
Q 011511 227 SQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF- 305 (484)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p- 305 (484)
......+..+|++|+|+|+..+...+..+++..+... +.|
T Consensus 374 -------------------------------------~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~ 414 (1289)
T 3avx_A 374 -------------------------------------KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPY 414 (1289)
T ss_dssp -------------------------------------HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSC
T ss_pred -------------------------------------HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCe
Confidence 3344567889999999999988777777776666654 778
Q ss_pred EEEEecccCCCch-hhh-----hhHHHH-hc-----CCCceeeecccC--------CCCchhhHHHHHHhh
Q 011511 306 IILAVNKCESPRK-GIM-----QVSEFW-SL-----GFSPLPISAISG--------TGTGELLDLVCSELK 356 (484)
Q Consensus 306 ~ilV~NK~Dl~~~-~~~-----~~~~~~-~~-----~~~~i~vSa~~g--------~gi~~L~~~i~~~l~ 356 (484)
+++|+||+|+... ... +...+. .. .++++++||++| .|+.+|++.+...++
T Consensus 415 IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 415 IIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp EEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred EEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 7899999999852 211 111121 22 357899999999 467788888877654
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.46 E-value=1.5e-13 Score=148.09 Aligned_cols=115 Identities=20% Similarity=0.283 Sum_probs=82.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce-----e------eec------CCCceeeeeEEEEEeCCceeeEeecccccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----I------VVD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~-----~------~~~------~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
.++|+|+|++|+|||||+++|+..... . ..+ ..+.|.......+.+.+..+.+|||||+.++.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~ 91 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDFT 91 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTCH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccchH
Confidence 678999999999999999999832100 0 001 23456666666677888899999999996421
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011511 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
.....++..+|.+|+|+|+..+........+..+... +.|
T Consensus 92 --------------------------------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~--~~p 131 (691)
T 1dar_A 92 --------------------------------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY--KVP 131 (691)
T ss_dssp --------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TCC
T ss_pred --------------------------------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc--CCC
Confidence 3345677889999999999888777666666666654 899
Q ss_pred EEEEecccCCCc
Q 011511 306 IILAVNKCESPR 317 (484)
Q Consensus 306 ~ilV~NK~Dl~~ 317 (484)
+++|+||+|+..
T Consensus 132 ~ivviNKiD~~~ 143 (691)
T 1dar_A 132 RIAFANKMDKTG 143 (691)
T ss_dssp EEEEEECTTSTT
T ss_pred EEEEEECCCccc
Confidence 999999999864
No 185
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.46 E-value=4.2e-13 Score=135.43 Aligned_cols=163 Identities=20% Similarity=0.346 Sum_probs=111.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-ceeeEeeccccccccCCCchhhhhhhhhhhc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-HEFMLVDTGGVLNVSKSQPNIMEDLAITTTI 241 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~ 241 (484)
...|+|+|++|||||||+++|++.. ..+..++.+|.....+.+.+.+ ..+.++||||+........
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~-~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~------------ 223 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK------------ 223 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC------------
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCC-ccccCcccceecceeeEEEecCcceEEEEeccccccchhhhh------------
Confidence 5689999999999999999999875 3566778888887777777765 7799999999864211110
Q ss_pred ccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC-CCCCcccHHHHHHHHhh---cCCCeEEEEecccCCCc
Q 011511 242 GMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTAADEEIADWLRKN---YMDKFIILAVNKCESPR 317 (484)
Q Consensus 242 ~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~-~~~~~~~~~~~~~l~~~---~~~~p~ilV~NK~Dl~~ 317 (484)
++. ..+...+..++.+++++|+. .+..... ...+.+... +...|.++|+||+|+..
T Consensus 224 ---~L~----------------~~fl~~~era~~lL~vvDls~~~~~~ls-~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 224 ---GLG----------------LEFLRHIARTRVLLYVLDAADEPLKTLE-TLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp ---CSC----------------HHHHHHHTSSSEEEEEEETTSCHHHHHH-HHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred ---hhh----------------HHHHHHHHHHHhhhEEeCCccCCHHHHH-HHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 000 12234456799999999985 1111111 111112211 23689999999999986
Q ss_pred hhhhhh-HHHH-hcCCCceeeecccCCCCchhhHHHHHHhhhc
Q 011511 318 KGIMQV-SEFW-SLGFSPLPISAISGTGTGELLDLVCSELKKV 358 (484)
Q Consensus 318 ~~~~~~-~~~~-~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~ 358 (484)
...... .... ..+.+++.+||+++.|+++|+..+.+.+...
T Consensus 284 ~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~ 326 (416)
T 1udx_A 284 EEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence 522222 2222 3467899999999999999999999887643
No 186
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.46 E-value=2e-13 Score=133.26 Aligned_cols=107 Identities=30% Similarity=0.398 Sum_probs=87.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
-.|+++|.+|||||||+|+|+|.+...++..+++|++..........+.++++|||||+.++... ......+...+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~----~~l~~~~~~~~ 86 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKS----DVLGHSMVEIA 86 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTT----CHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccc----hhHHHHHHHHH
Confidence 37999999999999999999999888888999999988766655422788999999999765311 23445566777
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhh-hhhc
Q 011511 452 FRAIRRSDVVALVIEAMACITEQADWR-DHRW 482 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~-~~~~ 482 (484)
...++.+|++++|+|+..+++.++..+ ++.+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l 118 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH
Confidence 788999999999999999999998887 5543
No 187
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.46 E-value=3.9e-14 Score=134.61 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=56.8
Q ss_pred hcCeEEEEeeCCCC--CCcccH-HHHHHHHhh--cCCCeEEEEecccCCCchhhhh-hHHHHh--cCCCceeeecccCCC
Q 011511 272 ESCVIIFLVDGQAG--LTAADE-EIADWLRKN--YMDKFIILAVNKCESPRKGIMQ-VSEFWS--LGFSPLPISAISGTG 343 (484)
Q Consensus 272 ~~d~vilVvD~~~~--~~~~~~-~~~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~~-~~~~~~--~~~~~i~vSa~~g~g 343 (484)
++|++|+|+|++.+ .+.... .++..+... ..+.|+++|+||+|+....... ...+.. .+++++++||++|.|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~g 241 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVN 241 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCC
Confidence 68999999998875 333221 222223221 2478999999999997543222 222322 367899999999999
Q ss_pred CchhhHHHHHHh
Q 011511 344 TGELLDLVCSEL 355 (484)
Q Consensus 344 i~~L~~~i~~~l 355 (484)
+++++..+.+.+
T Consensus 242 v~elf~~l~~~l 253 (255)
T 3c5h_A 242 VDLAFSTLVQLI 253 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999987765
No 188
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.45 E-value=3.9e-14 Score=140.56 Aligned_cols=149 Identities=19% Similarity=0.217 Sum_probs=88.0
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCC------cceeeecCCCce------------------------------------
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGG------NRAIVVDEPGVT------------------------------------ 198 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~------~~~~~~~~~~~t------------------------------------ 198 (484)
...+.|+|+|++|||||||+|+|++. +.......+++.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~ 151 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV 151 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence 45789999999999999999999862 222222222211
Q ss_pred -eeeeEEE--EEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCe
Q 011511 199 -RDRMYGR--SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCV 275 (484)
Q Consensus 199 -~~~~~~~--~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ 275 (484)
....... +...+..+.++||||+... . ......+|+
T Consensus 152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~---~--------------------------------------~~l~~~~d~ 190 (349)
T 2www_A 152 TRTTNEAILLCEGAGYDIILIETVGVGQS---E--------------------------------------FAVADMVDM 190 (349)
T ss_dssp CTTHHHHHHHHHHTTCSEEEEECCCC--C---H--------------------------------------HHHHTTCSE
T ss_pred hHHHHHHHHhhccCCCCEEEEECCCcchh---h--------------------------------------hhHHhhCCE
Confidence 1000000 0125667899999997521 0 022467899
Q ss_pred EEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-hh-hHHH---Hh--------cCCCceeeecccCC
Q 011511 276 IIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQ-VSEF---WS--------LGFSPLPISAISGT 342 (484)
Q Consensus 276 vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~-~~~~---~~--------~~~~~i~vSa~~g~ 342 (484)
+++|+|+..+... . .+.......|.++|+||+|+..... .. ...+ .. ...+++++||++|.
T Consensus 191 vl~V~d~~~~~~~---~---~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~ 264 (349)
T 2www_A 191 FVLLLPPAGGDEL---Q---GIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGE 264 (349)
T ss_dssp EEEEECCC------------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCT
T ss_pred EEEEEcCCcchhH---H---HhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCC
Confidence 9999998654321 1 1111123568899999999875321 11 1111 11 12357899999999
Q ss_pred CCchhhHHHHHHhh
Q 011511 343 GTGELLDLVCSELK 356 (484)
Q Consensus 343 gi~~L~~~i~~~l~ 356 (484)
|+++|+++|.+.+.
T Consensus 265 Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 265 GISEMWDKMKDFQD 278 (349)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 189
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.45 E-value=1.4e-13 Score=127.22 Aligned_cols=142 Identities=19% Similarity=0.112 Sum_probs=79.3
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCcceee--ecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAIV--VDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|++|+|||||+++|++...... ...+..+. .+....+.+|||||+.......
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~---------- 72 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKL---------- 72 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET-------TGGGSSCEEEECCCCGGGTHHH----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE-------EeeCceEEEEECCCcHHHHHHH----------
Confidence 4578999999999999999999998653211 11121111 1245679999999986532110
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC-CCCCc--ccHHHHHHHHh----hcCCCeEEEEec
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTA--ADEEIADWLRK----NYMDKFIILAVN 311 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~-~~~~~--~~~~~~~~l~~----~~~~~p~ilV~N 311 (484)
...+......+|++++|+|+. .+... ....+...+.. ...+.|+++|+|
T Consensus 73 ------------------------~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 128 (218)
T 1nrj_B 73 ------------------------SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 128 (218)
T ss_dssp ------------------------HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred ------------------------HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEE
Confidence 111222234489999999987 33222 22233333322 114789999999
Q ss_pred ccCCCchhhhh--------h-HHH-HhcCCCceeeecccCCC
Q 011511 312 KCESPRKGIMQ--------V-SEF-WSLGFSPLPISAISGTG 343 (484)
Q Consensus 312 K~Dl~~~~~~~--------~-~~~-~~~~~~~i~vSa~~g~g 343 (484)
|+|+....... . ..+ ...+.+++++||++|.+
T Consensus 129 K~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 129 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE 170 (218)
T ss_dssp CTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred chHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99997643211 0 111 11234678899998765
No 190
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.45 E-value=4.8e-13 Score=144.32 Aligned_cols=116 Identities=18% Similarity=0.234 Sum_probs=83.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-----------eeec------CCCceeeeeEEEEEeCC-------ceeeEee
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVD------EPGVTRDRMYGRSFWGE-------HEFMLVD 217 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-----------~~~~------~~~~t~~~~~~~~~~~~-------~~i~liD 217 (484)
..++|+|+|+.|+|||||+++|+..... ...+ ..+.|.......+.+.+ ..+.+||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 4789999999999999999999643110 0111 23445544445556666 7899999
Q ss_pred ccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHH
Q 011511 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (484)
Q Consensus 218 tpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l 297 (484)
|||+.++. ..+..++..+|.+|+|+|+..+.......++..+
T Consensus 89 TPG~~df~--------------------------------------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~ 130 (704)
T 2rdo_7 89 TPGHVDFT--------------------------------------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA 130 (704)
T ss_pred CCCccchH--------------------------------------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH
Confidence 99997532 2344677889999999999887766655555555
Q ss_pred HhhcCCCeEEEEecccCCCc
Q 011511 298 RKNYMDKFIILAVNKCESPR 317 (484)
Q Consensus 298 ~~~~~~~p~ilV~NK~Dl~~ 317 (484)
... +.|+++|+||+|+..
T Consensus 131 ~~~--~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 131 NKY--KVPRIAFVNKMDRMG 148 (704)
T ss_pred HHc--CCCEEEEEeCCCccc
Confidence 544 899999999999754
No 191
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.45 E-value=1.6e-13 Score=133.18 Aligned_cols=154 Identities=14% Similarity=0.127 Sum_probs=96.6
Q ss_pred eEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccC
Q 011511 165 RVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGME 244 (484)
Q Consensus 165 ~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 244 (484)
||+++|.+|||||||++++.+..........+.|.......+. ...++.+|||+|+.++.... +
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l------------- 64 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y------------- 64 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H-------------
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h-------------
Confidence 6899999999999999988765322111122333333322221 23679999999998753210 0
Q ss_pred CCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHH---hhcCCCeEEEEecccCCCchhhh
Q 011511 245 GIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLR---KNYMDKFIILAVNKCESPRKGIM 321 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~---~~~~~~p~ilV~NK~Dl~~~~~~ 321 (484)
....+++.++++|+|+|++........++..++. ...++.|+++|+||+|+......
T Consensus 65 --------------------~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R 124 (331)
T 3r7w_B 65 --------------------DSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFK 124 (331)
T ss_dssp --------------------HHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHH
T ss_pred --------------------hhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhh
Confidence 1125568899999999988762222223333332 33468999999999999764211
Q ss_pred ----hh------HHHHh-----cCCCceeeecccCCCCchhhHHHHHHh
Q 011511 322 ----QV------SEFWS-----LGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 322 ----~~------~~~~~-----~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
+. ..+.. .+++++++||++ .++.+.+..+.+.+
T Consensus 125 ~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 125 VDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp HHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred hhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHH
Confidence 11 11222 245778999997 57888887776654
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.44 E-value=2.7e-13 Score=135.04 Aligned_cols=163 Identities=21% Similarity=0.299 Sum_probs=97.1
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcce-----eeecCCC----------------------ceee--------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRA-----IVVDEPG----------------------VTRD-------------- 200 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~-----~~~~~~~----------------------~t~~-------------- 200 (484)
..++|+++|.+|||||||+|+|+|.... .+...|+ +|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999999999999997643 2222233 1111
Q ss_pred ---------eeEEEEEe-CCceeeEeeccccccccCC--CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHH
Q 011511 201 ---------RMYGRSFW-GEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATA 268 (484)
Q Consensus 201 ---------~~~~~~~~-~~~~i~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~ 268 (484)
...-.+.. .+..+.+|||||+...... ..... ..+...+..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~---------------------------~~~~~~~~~ 162 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE---------------------------FQIRDMLMQ 162 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHH---------------------------HHHHHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHH---------------------------HHHHHHHHH
Confidence 00001111 2467999999999753221 11100 112233344
Q ss_pred Hhhh-cCeEEEEeeCCCCCCcccHH-HHHHHHhhcCCCeEEEEecccCCCchhh--hhhHHH----HhcCC-Cceeeecc
Q 011511 269 AIEE-SCVIIFLVDGQAGLTAADEE-IADWLRKNYMDKFIILAVNKCESPRKGI--MQVSEF----WSLGF-SPLPISAI 339 (484)
Q Consensus 269 ~~~~-~d~vilVvD~~~~~~~~~~~-~~~~l~~~~~~~p~ilV~NK~Dl~~~~~--~~~~~~----~~~~~-~~i~vSa~ 339 (484)
++.. .+++++|+|+..+....+.. +.+.+.. .+.|+++|+||+|+..... ...... ...++ +++++||+
T Consensus 163 ~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~ 240 (353)
T 2x2e_A 163 FVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQK 240 (353)
T ss_dssp HHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHH
T ss_pred HHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcc
Confidence 4444 45666677776555444432 3333333 3789999999999976432 111110 01233 57889999
Q ss_pred cCCCCchhhHHHHH
Q 011511 340 SGTGTGELLDLVCS 353 (484)
Q Consensus 340 ~g~gi~~L~~~i~~ 353 (484)
++.|++++++.+..
T Consensus 241 ~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 241 DIDGKKDITAALAA 254 (353)
T ss_dssp HHHTTCCHHHHHHH
T ss_pred cccccccHHHHHHH
Confidence 99999999998876
No 193
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.42 E-value=4.3e-13 Score=133.73 Aligned_cols=166 Identities=15% Similarity=0.065 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCC------Cceeeee--EEEEEeCCc--eeeEeeccccccccCCCchhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRM--YGRSFWGEH--EFMLVDTGGVLNVSKSQPNIM 232 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~------~~t~~~~--~~~~~~~~~--~i~liDtpG~~~~~~~~~~~~ 232 (484)
.++|+++|++|+|||||+|+|++.........+ ..|.... ...+...+. .+.+|||||+.........
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~-- 114 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC-- 114 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC---------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH--
Confidence 468999999999999999999876433222111 1222221 112222333 5899999999543221110
Q ss_pred hhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhh-------------cCeEEEEeeC-CCCCCcccHHHHHHHH
Q 011511 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEE-------------SCVIIFLVDG-QAGLTAADEEIADWLR 298 (484)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~-------------~d~vilVvD~-~~~~~~~~~~~~~~l~ 298 (484)
...+..++..++..++.. +|+++|+++. ..++...+..+...+
T Consensus 115 ----------------------~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l- 171 (361)
T 2qag_A 115 ----------------------FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI- 171 (361)
T ss_dssp -----------------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-
Confidence 011112222222233322 2467777775 445555554444443
Q ss_pred hhcCCCeEEEEecccCCCchhhhhh-----HHH-HhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 299 KNYMDKFIILAVNKCESPRKGIMQV-----SEF-WSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 299 ~~~~~~p~ilV~NK~Dl~~~~~~~~-----~~~-~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+.|+++|+||+|+........ ..+ ...+++++++||+++.+ ++.+..+...+.
T Consensus 172 --~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 172 --HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp --CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred --ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 24789999999999986443221 111 22467899999999998 666666655543
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=1.1e-12 Score=140.63 Aligned_cols=162 Identities=22% Similarity=0.286 Sum_probs=103.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCcee------------------------------------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR------------------------------------------ 199 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~------------------------------------------ 199 (484)
..++|+++|.+++|||||+|+|+|......+.. .+|+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 478999999999999999999999754222211 1111
Q ss_pred ---------eeeEEEEEe-CCceeeEeeccccccccCC--CchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHH
Q 011511 200 ---------DRMYGRSFW-GEHEFMLVDTGGVLNVSKS--QPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQAT 267 (484)
Q Consensus 200 ---------~~~~~~~~~-~~~~i~liDtpG~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~ 267 (484)
....-.+.. ...++.++||||+...... ..... . .+.+.+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~--------------------~-------~i~~lv~ 181 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIE--------------------F-------QIRDMLM 181 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHH--------------------H-------HHHHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHH--------------------H-------HHHHHHH
Confidence 111111111 2345899999999763211 11100 0 1112233
Q ss_pred HHh-hhcCeEEEEeeCCCCCCcccH-HHHHHHHhhcCCCeEEEEecccCCCchhhhhh--HH--HH--hcCC-Cceeeec
Q 011511 268 AAI-EESCVIIFLVDGQAGLTAADE-EIADWLRKNYMDKFIILAVNKCESPRKGIMQV--SE--FW--SLGF-SPLPISA 338 (484)
Q Consensus 268 ~~~-~~~d~vilVvD~~~~~~~~~~-~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~--~~--~~--~~~~-~~i~vSa 338 (484)
.++ ..+|++++|+|++.+....+. .++..+... +.|+++|+||+|+........ .. .. ..++ +++++||
T Consensus 182 ~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~--g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA 259 (772)
T 3zvr_A 182 QFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQ 259 (772)
T ss_dssp HHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTT--CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCC
T ss_pred HHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhc--CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecc
Confidence 333 568999999999888777765 566666654 789999999999986432211 11 01 1132 5789999
Q ss_pred ccCCCCchhhHHHHH
Q 011511 339 ISGTGTGELLDLVCS 353 (484)
Q Consensus 339 ~~g~gi~~L~~~i~~ 353 (484)
++|.|+++|++.+.+
T Consensus 260 ~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 260 KDIDGKKDITAALAA 274 (772)
T ss_dssp EESSSSEEHHHHHHH
T ss_pred cccccchhHHHHHHH
Confidence 999999999998876
No 195
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.40 E-value=7.9e-13 Score=141.98 Aligned_cols=115 Identities=21% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCccee-----e------ec------CCCceeeeeEEEEEeCCceeeEeeccccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAI-----V------VD------EPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~-----~------~~------~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
...+|+|+|++|+|||||+++|++..... + .+ ..+.+.......+.+.+..+.+|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 35689999999999999999998432110 0 00 1234555555566777888999999998653
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCC
Q 011511 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~ 304 (484)
. .....++..+|.+++|+|+..+.......++..+... +.
T Consensus 88 ~--------------------------------------~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~--~i 127 (665)
T 2dy1_A 88 V--------------------------------------GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERL--GL 127 (665)
T ss_dssp H--------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT--TC
T ss_pred H--------------------------------------HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHc--cC
Confidence 2 3345677889999999998887776666666666654 89
Q ss_pred eEEEEecccCCC
Q 011511 305 FIILAVNKCESP 316 (484)
Q Consensus 305 p~ilV~NK~Dl~ 316 (484)
|+++|+||+|+.
T Consensus 128 p~ilv~NKiD~~ 139 (665)
T 2dy1_A 128 PRMVVVTKLDKG 139 (665)
T ss_dssp CEEEEEECGGGC
T ss_pred CEEEEecCCchh
Confidence 999999999986
No 196
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.40 E-value=7.9e-13 Score=117.60 Aligned_cols=99 Identities=35% Similarity=0.605 Sum_probs=75.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
+.+|+++|.+|+|||||+|.|.+.....+.+.+|+|++.....+.. ++..+.++||||+.... .......+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~------~~~~~~~~~~ 76 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHI-DGMPLHIIDTAGLREAS------DEVERIGIER 76 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCS------SHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEE-CCeEEEEEECCCcccch------hHHHHHHHHH
Confidence 4589999999999999999999987656778889998876655553 56789999999986531 1233333455
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhh
Q 011511 451 AFRAIRRSDVVALVIEAMACITEQAD 476 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~ 476 (484)
.+..++.+|++++|+|+..+.+.++.
T Consensus 77 ~~~~~~~ad~~i~v~D~~~~~s~~~~ 102 (172)
T 2gj8_A 77 AWQEIEQADRVLFMVDGTTTDAVDPA 102 (172)
T ss_dssp HHHHHHTCSEEEEEEETTTCCCCSHH
T ss_pred HHHHHHhCCEEEEEEECCCCCCHHHH
Confidence 56678999999999999877665444
No 197
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.39 E-value=7e-13 Score=126.19 Aligned_cols=106 Identities=17% Similarity=0.090 Sum_probs=78.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-ceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG-TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g-tt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|++...+.+...++ +|++....... +++.++.||||||+.+..... ......+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~~~---~~~~~~i~~ 97 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKDHC---EALYKEVQR 97 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSCCC---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCCCH---HHHHHHHHH
Confidence 4589999999999999999999998777766665 66665544443 467899999999997653210 111122344
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+...++.+|++++|+|+. +++.++.+++++
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~ 128 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQR 128 (260)
T ss_dssp HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHH
Confidence 5556789999999999987 599988877654
No 198
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.39 E-value=2.1e-13 Score=145.80 Aligned_cols=114 Identities=19% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce-----------eeecC------CCceeeeeEEEEEeCCceeeEeecccccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRA-----------IVVDE------PGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~-----------~~~~~------~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
+++|+|+||.++|||||..+|+..... ...+. .|.|.......+.|++..++++||||+.++.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 678999999999999999998621100 01111 1445555455667889999999999998643
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011511 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
..+.+.+..+|.+|+|+|+..+...+...+++.+.+. +.|
T Consensus 82 --------------------------------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp 121 (638)
T 3j25_A 82 --------------------------------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIP 121 (638)
T ss_dssp --------------------------------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCS
T ss_pred --------------------------------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCC
Confidence 3556788999999999999999999888888888887 899
Q ss_pred EEEEecccCCC
Q 011511 306 IILAVNKCESP 316 (484)
Q Consensus 306 ~ilV~NK~Dl~ 316 (484)
.++++||+|..
T Consensus 122 ~i~~INKmDr~ 132 (638)
T 3j25_A 122 TIFFINKIDQN 132 (638)
T ss_dssp CEECCEECCSS
T ss_pred eEEEEeccccc
Confidence 99999999964
No 199
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.39 E-value=1.2e-13 Score=142.21 Aligned_cols=105 Identities=42% Similarity=0.662 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCc-cCccccCCCCchhHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSV 448 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~-~~~~~~~~~~~~~~~~~ 448 (484)
.+.+|+++|.+|+|||||+|+|++.+...+.+.+|||++.....+.. +|..+.+|||||+. ++. ...+.+.+
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~------~~ve~~gi 314 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETN------DLVERLGI 314 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCC------TTCCCCCH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEec-CCeEEEEEECCCccccch------hhHHHHHH
Confidence 34689999999999999999999988777899999999988877764 68899999999997 532 12333335
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 449 NRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
..+...++.+|++|+|+|+..+.+.++..+++.
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~ 347 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRKILER 347 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHH
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHHHHHH
Confidence 556678899999999999998888888766543
No 200
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.39 E-value=5.6e-13 Score=125.23 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=71.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-CceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS-GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~-gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|+|...+.....+ ++|++....... .++..+.||||||+.+.... +.........
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~---~~~~~~~~~~ 104 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVP---NAETSKEIIR 104 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC--------CHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCC---HHHHHHHHHH
Confidence 458999999999999999999998765443222 566665544443 46789999999999865321 1122233344
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
......+++|++|+|+|+. +++.++...+++|
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~ 136 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKI 136 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHH
Confidence 4556677899999999986 7888877766543
No 201
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.38 E-value=1.2e-12 Score=130.73 Aligned_cols=163 Identities=20% Similarity=0.199 Sum_probs=97.5
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCcee------------------------------------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTR------------------------------------------ 199 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~------------------------------------------ 199 (484)
..++|+++|.+|||||||+|+|+|......+. ..+|.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~-~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~ 111 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGS-GIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDET 111 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCS-SSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCC-CcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHH
Confidence 57799999999999999999999965311111 01110
Q ss_pred ------------eeeEEEEE-eCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHH
Q 011511 200 ------------DRMYGRSF-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQA 266 (484)
Q Consensus 200 ------------~~~~~~~~-~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~ 266 (484)
....-.+. .....+.+|||||+.......+. ......+...+
T Consensus 112 ~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~-------------------------~~~~~~~~~~~ 166 (360)
T 3t34_A 112 DRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQS-------------------------DSIVKDIENMV 166 (360)
T ss_dssp HHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCC-------------------------SSHHHHHHHHH
T ss_pred HHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCc-------------------------hhHHHHHHHHH
Confidence 00011111 12446899999999865321110 01112234567
Q ss_pred HHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc-CCCeEEEEecccCCCchhhhhh--HH--HHhcCCCceeeecccC
Q 011511 267 TAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY-MDKFIILAVNKCESPRKGIMQV--SE--FWSLGFSPLPISAISG 341 (484)
Q Consensus 267 ~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~-~~~p~ilV~NK~Dl~~~~~~~~--~~--~~~~~~~~i~vSa~~g 341 (484)
..++..+|++|+|+|+...... ......++.... .+.|+++|+||+|+........ .. ....+.+++++++.++
T Consensus 167 ~~~i~~~d~iilvv~~~~~~~~-~~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~ 245 (360)
T 3t34_A 167 RSYIEKPNCIILAISPANQDLA-TSDAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQ 245 (360)
T ss_dssp HHHHHSSSEEEEEEEETTSCGG-GCHHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCH
T ss_pred HHHhhcCCeEEEEeecccCCcC-CHHHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECCh
Confidence 7888999999999986432211 122333333321 3679999999999976432211 11 1224567899999999
Q ss_pred CCCchhhHHH
Q 011511 342 TGTGELLDLV 351 (484)
Q Consensus 342 ~gi~~L~~~i 351 (484)
.++++.+...
T Consensus 246 ~~i~~~~~~~ 255 (360)
T 3t34_A 246 ADINKNVDMI 255 (360)
T ss_dssp HHHHTTCCHH
T ss_pred HHhccCCCHH
Confidence 8887765543
No 202
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.38 E-value=1.3e-13 Score=141.44 Aligned_cols=107 Identities=38% Similarity=0.534 Sum_probs=76.0
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+.+|+++|.+|+|||||+|+|++.....+...+|+|++.....+.. +|.++.+|||||++++. ...+.+.+
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~------~~ve~~gi 294 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETS------DQVEKIGV 294 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEE-TTEEEEECC----------------------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEE-CCEEEEEEECCccccch------hHHHHHHH
Confidence 345689999999999999999999988777888999999987766654 78899999999997642 23444445
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.++...++.+|++++|+|+..+++.++..+++.+
T Consensus 295 ~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l 328 (462)
T 3geh_A 295 ERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV 328 (462)
T ss_dssp ----CCCCSCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred HHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc
Confidence 6677788999999999999999999988777654
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.37 E-value=2.6e-13 Score=135.15 Aligned_cols=149 Identities=25% Similarity=0.270 Sum_probs=92.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHh------CCcceeeecCCCceeee-----------------eEE--------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRDR-----------------MYG-------------- 204 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t~~~-----------------~~~-------------- 204 (484)
..++|+|+|.+|+|||||+++|. |.+.......++.+... ...
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 46789999999999999999986 33333333222222100 000
Q ss_pred --------EEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeE
Q 011511 205 --------RSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (484)
Q Consensus 205 --------~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 276 (484)
.+...+..+.+|||||+.+. ....+..+|++
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~~-----------------------------------------~~~~~~~aD~v 196 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQS-----------------------------------------EVAVANMVDTF 196 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSSH-----------------------------------------HHHHHTTCSEE
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCcH-----------------------------------------HHHHHHhCCEE
Confidence 00124678999999996431 11334789999
Q ss_pred EEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhh-hH-HH------H-----hcCCCceeeecccCCC
Q 011511 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQ-VS-EF------W-----SLGFSPLPISAISGTG 343 (484)
Q Consensus 277 ilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~-~~------~-----~~~~~~i~vSa~~g~g 343 (484)
++|+|+..+..... +.....+.|.++|+||+|+....... .. .+ . ..+.+++++||++|.|
T Consensus 197 l~V~d~~~~~~~~~------l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~G 270 (355)
T 3p32_A 197 VLLTLARTGDQLQG------IKKGVLELADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRG 270 (355)
T ss_dssp EEEEESSTTCTTTT------CCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBS
T ss_pred EEEECCCCCccHHH------HHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCC
Confidence 99999754322211 11212356899999999987542211 11 11 1 1145789999999999
Q ss_pred CchhhHHHHHHhhh
Q 011511 344 TGELLDLVCSELKK 357 (484)
Q Consensus 344 i~~L~~~i~~~l~~ 357 (484)
+++|++.+.+.+..
T Consensus 271 i~~L~~~i~~~~~~ 284 (355)
T 3p32_A 271 LAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887754
No 204
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.37 E-value=1.8e-13 Score=140.85 Aligned_cols=104 Identities=32% Similarity=0.494 Sum_probs=55.9
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+.+|+++|.+|+|||||+|+|++.....+.+.+|||++.....+.. +|.++.+|||||+.++. ...+.+.+.
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~------~~ve~~gi~ 304 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG------EEIEHEGIR 304 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch------hHHHHHHHH
Confidence 45689999999999999999999998888899999999988776664 67889999999997632 233444456
Q ss_pred HHHHHhhcCcEEEEEEeCcccccH----Hhhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITE----QADWRDH 480 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~----~d~~~~~ 480 (484)
.+...++.+|++++|+|+..+.+. ++..+++
T Consensus 305 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~ 339 (476)
T 3gee_A 305 RSRMKMAEADLILYLLDLGTERLDDELTEIRELKA 339 (476)
T ss_dssp ---CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHH
Confidence 667788999999999999988877 4444444
No 205
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.36 E-value=7.8e-13 Score=122.50 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchh--HH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE--AL 446 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~--~~ 446 (484)
...+|+++|.+|+|||||+|+|++.. ...+...+|+|++.........++..+.||||||+....... .... ..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~---~~~~~~~~ 104 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPG---AAKAHWEQ 104 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCS---THHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCCh---hhHHHHHH
Confidence 35689999999999999999999987 457788889998866555554567899999999986643211 1111 12
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 447 SVNRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.+...++....+|++++|+|+..+++..+..+++++
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l 140 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWF 140 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 344555666778999999999999999988877654
No 206
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.35 E-value=2.7e-12 Score=115.96 Aligned_cols=117 Identities=23% Similarity=0.217 Sum_probs=71.6
Q ss_pred CCCCeEEEEcCCCCChhHHHHHHhCCccee--eecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011511 161 HLLPRVAIVGRPNVGKSALFNRLVGGNRAI--VVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 161 ~~~~~V~l~G~~~~GKSsl~n~l~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
...++|+++|.+|||||||+|+|++..... ....++.+. .+.+..+.+|||||+........
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~~--------- 109 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKLS--------- 109 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHH---------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee-------eecCCeEEEEECCCCchHHHHHH---------
Confidence 346899999999999999999999875321 111222221 12567899999999876543221
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCC-CCCCccc--HHHHHHHHhh----cCCCeEEEEec
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQ-AGLTAAD--EEIADWLRKN----YMDKFIILAVN 311 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~-~~~~~~~--~~~~~~l~~~----~~~~p~ilV~N 311 (484)
..+...+..+|++++|+|+. ....... ..+...+... ..+.|+++|+|
T Consensus 110 -------------------------~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 164 (193)
T 2ged_A 110 -------------------------DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 164 (193)
T ss_dssp -------------------------HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred -------------------------HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEE
Confidence 22223445689999999986 2111111 1122222211 13789999999
Q ss_pred ccCCCch
Q 011511 312 KCESPRK 318 (484)
Q Consensus 312 K~Dl~~~ 318 (484)
|+|+...
T Consensus 165 K~Dl~~~ 171 (193)
T 2ged_A 165 KSELFTA 171 (193)
T ss_dssp CTTSTTC
T ss_pred chHhcCC
Confidence 9998764
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.35 E-value=6.5e-13 Score=131.90 Aligned_cols=93 Identities=20% Similarity=0.333 Sum_probs=75.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+|+|.||||||||+|+|.+.. ..+++.|+||++.....+. +.+.++.++||||+.... ..........
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~-~~~~~i~l~D~pGl~~~a-------~~~~~~g~~~ 143 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIR-YKGAKIQMLDLPGIIDGA-------KDGRGRGKQV 143 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEE-ETTEEEEEEECGGGCCC------------CHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEE-eCCcEEEEEeCCCccCCc-------hhhhHHHHHH
Confidence 389999999999999999999976 6678999999998877665 467899999999997532 1223345667
Q ss_pred HHHhhcCcEEEEEEeCcccccH
Q 011511 452 FRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
+..++.||++++|+|+.+++.+
T Consensus 144 l~~i~~ad~il~vvD~~~p~~~ 165 (376)
T 4a9a_A 144 IAVARTCNLLFIILDVNKPLHH 165 (376)
T ss_dssp HHHHHHCSEEEEEEETTSHHHH
T ss_pred HHHHHhcCccccccccCccHHH
Confidence 7889999999999999876544
No 208
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.31 E-value=8.3e-13 Score=131.70 Aligned_cols=184 Identities=18% Similarity=0.238 Sum_probs=105.2
Q ss_pred EeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHHH----hcCCCceeeecccCCCCchhhHHHHHH
Q 011511 279 LVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFW----SLGFSPLPISAISGTGTGELLDLVCSE 354 (484)
Q Consensus 279 VvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~----~~~~~~i~vSa~~g~gi~~L~~~i~~~ 354 (484)
+++...++....+.+.+++......++.++++||+|+........+..+ ..+.....+++..+.+...+...+...
T Consensus 64 i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 143 (357)
T 2e87_A 64 VLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDI 143 (357)
T ss_dssp HHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343344444455555555444346788899999999887655443322 213334444444444433333322211
Q ss_pred hhhcc---C----cchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEc
Q 011511 355 LKKVE---G----TEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDT 427 (484)
Q Consensus 355 l~~~~---~----~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDT 427 (484)
..... . ............+|+++|.+|+|||||+|.|++.. +.++..+++|++.....+. ..+..+.++||
T Consensus 144 ~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt 221 (357)
T 2e87_A 144 DDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFE-DGYFRYQIIDT 221 (357)
T ss_dssp HHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEE-ETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEE-ecCceEEEEeC
Confidence 11100 0 00000111345689999999999999999999986 5667778888776544443 24667999999
Q ss_pred CCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 428 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
||+.+...... ...+ ..........+|++++|+|+..
T Consensus 222 ~G~~~~~~~~~--~~~~---~~~~~~~~~~ad~illV~D~s~ 258 (357)
T 2e87_A 222 PGLLDRPISER--NEIE---KQAILALRYLGNLIIYIFDPSE 258 (357)
T ss_dssp TTTSSSCSTTS--CHHH---HHHHHGGGGTCSEEEEEECTTC
T ss_pred CCccccchhhh--hHHH---HHHHHHHHhcCCEEEEEEeCCc
Confidence 99976432210 1111 1111122346899999999765
No 209
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.30 E-value=2.9e-12 Score=126.77 Aligned_cols=148 Identities=17% Similarity=0.133 Sum_probs=89.9
Q ss_pred CCCeEEEEcCCCCChhHHHHHHh------CCcceeeecCCCceee--------------------eeEEE----------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVTRD--------------------RMYGR---------- 205 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t~~--------------------~~~~~---------- 205 (484)
....|+++|++|+|||||+|.|. |.+...+...++++.. +....
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~~ 134 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGAS 134 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchhH
Confidence 46789999999999999999996 3333444444433220 00000
Q ss_pred ---------EEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeE
Q 011511 206 ---------SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (484)
Q Consensus 206 ---------~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 276 (484)
..+.+.++.++||||+.+.. . .....+|.+
T Consensus 135 ~~~~~~~~~~~~~~~~i~liDTpG~~~~~--------------------------------------~---~~~~~aD~v 173 (341)
T 2p67_A 135 QRARELMLLCEAAGYDVVIVETVGVGQSE--------------------------------------T---EVARMVDCF 173 (341)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEECCTTHH--------------------------------------H---HHHTTCSEE
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCccchH--------------------------------------H---HHHHhCCEE
Confidence 01346789999999986411 0 124789999
Q ss_pred EEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-hhhH-HHH------hc-----CCCceeeecccCCC
Q 011511 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-MQVS-EFW------SL-----GFSPLPISAISGTG 343 (484)
Q Consensus 277 ilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-~~~~-~~~------~~-----~~~~i~vSa~~g~g 343 (484)
++|+|+..+...... .... .+.|.++|+||+|+..... .... .+. .. ..+++++||++|.|
T Consensus 174 l~Vvd~~~~~~~~~l--~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~g 247 (341)
T 2p67_A 174 ISLQIAGGGDDLQGI--KKGL----MEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRG 247 (341)
T ss_dssp EEEECC------CCC--CHHH----HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBS
T ss_pred EEEEeCCccHHHHHH--HHhh----hcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCC
Confidence 999998644221110 0011 1467899999999976421 1111 111 11 23578999999999
Q ss_pred CchhhHHHHHHhh
Q 011511 344 TGELLDLVCSELK 356 (484)
Q Consensus 344 i~~L~~~i~~~l~ 356 (484)
+++|++.+.+.+.
T Consensus 248 i~~L~~~l~~~~~ 260 (341)
T 2p67_A 248 IDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987654
No 210
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.29 E-value=5.3e-12 Score=124.68 Aligned_cols=90 Identities=27% Similarity=0.272 Sum_probs=62.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-----------------ceeeEeecccccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~ 225 (484)
..+|+|+|.+|||||||+|+|++.. +.+.++|++|.....+.+.+.+ ..+.+|||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999876 5677888888888777777665 468999999997532
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC
Q 011511 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~ 284 (484)
.....+ ...++..+..+|++++|+|+..
T Consensus 81 ~~~~gl-------------------------------~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGL-------------------------------GNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGG-------------------------------TCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchH-------------------------------HHHHHHHHHhcCeEEEEEecCC
Confidence 111111 0233456778899999998765
No 211
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.28 E-value=1.1e-12 Score=127.53 Aligned_cols=104 Identities=32% Similarity=0.392 Sum_probs=77.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCc-cCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIR-KRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~-~~~~~~~~~~~~~~~~~~ 449 (484)
...|+++|++|+|||||+|+|+|.....++..+++|++.....+. .++.++.++||||+. .+. ......+..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~~------~~l~~~~~~ 80 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEK------RAINRLMNK 80 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHH------HHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE-ECCeeEEEEECcCCCccch------hhHHHHHHH
Confidence 347999999999999999999999887788889999876554333 456789999999985 221 011112222
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.+...++.+|++++|+|+.. ++..++++++.+
T Consensus 81 ~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l 112 (301)
T 1ega_A 81 AASSSIGDVELVIFVVEGTR-WTPDDEMVLNKL 112 (301)
T ss_dssp CTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHH
Confidence 23456788999999999987 999999887643
No 212
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.26 E-value=3.2e-11 Score=117.11 Aligned_cols=171 Identities=12% Similarity=0.027 Sum_probs=74.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCC------Cceee--eeEEEEEeC--CceeeEeeccccccccCCCchhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRD--RMYGRSFWG--EHEFMLVDTGGVLNVSKSQPNIM 232 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~------~~t~~--~~~~~~~~~--~~~i~liDtpG~~~~~~~~~~~~ 232 (484)
.++|+|+|++|+|||||+|+|.|.........+ ..+.. ......... ...+++|||+|+.........+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~- 96 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF- 96 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C-
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH-
Confidence 578999999999999999999886322211110 01111 111111111 2358999999985321100000
Q ss_pred hhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHH---------hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCC
Q 011511 233 EDLAITTTIGMEGIPLATREAAVARMPSMIERQATAA---------IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMD 303 (484)
Q Consensus 233 ~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~ 303 (484)
.. +...+ ...+.+..... ...+++++++.++... ..+......+.....+
T Consensus 97 ~~----------------l~~~l---~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~--~Ld~~~~~~l~~l~~~ 155 (301)
T 2qnr_A 97 KT----------------IISYI---DEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH--GLKPLDVAFMKAIHNK 155 (301)
T ss_dssp TT----------------HHHHH---HHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS--SCCHHHHHHHHHHTTT
T ss_pred HH----------------HHHHH---HHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc--CCCHHHHHHHHHHHhc
Confidence 00 00001 01111111111 1112345555543221 1333223444443345
Q ss_pred CeEEEEecccCCCchhhhh-----hHH-HHhcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 304 KFIILAVNKCESPRKGIMQ-----VSE-FWSLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 304 ~p~ilV~NK~Dl~~~~~~~-----~~~-~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.++++|+||+|+....... ... ....+++++++||+++ |+++++..+.+.+.
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~ 213 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK 213 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence 7899999999997643221 112 2345778999999999 99999998887664
No 213
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.26 E-value=1.4e-11 Score=129.16 Aligned_cols=131 Identities=19% Similarity=0.173 Sum_probs=81.8
Q ss_pred CCCCCeEEEEcCCCCChhHHHHHHhCCcce--eeecCCCceeeeeEE---------------------------------
Q 011511 160 EHLLPRVAIVGRPNVGKSALFNRLVGGNRA--IVVDEPGVTRDRMYG--------------------------------- 204 (484)
Q Consensus 160 ~~~~~~V~l~G~~~~GKSsl~n~l~~~~~~--~~~~~~~~t~~~~~~--------------------------------- 204 (484)
....++|+|+|.+|+|||||+|+|+|.... .++..++++......
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 345789999999999999999999998753 355555543321100
Q ss_pred ---EEEeCC---ceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEE
Q 011511 205 ---RSFWGE---HEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIF 278 (484)
Q Consensus 205 ---~~~~~~---~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vil 278 (484)
...+.+ ..+.+|||||+....... ..+.+ .+...+...+..+|++|+
T Consensus 142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~--~~~~~-------------------------~f~~~~~~~l~~aD~il~ 194 (550)
T 2qpt_A 142 RFMCAQLPNQVLESISIIDTPGILSGAKQR--VSRGY-------------------------DFPAVLRWFAERVDLIIL 194 (550)
T ss_dssp TEEEEECCCHHHHHCEEEECCCBCC---------CCS-------------------------CHHHHHHHHHHHCSEEEE
T ss_pred cceEEeccccccCCEEEEECcCCCCcchhH--HHHHh-------------------------hHHHHHHHHHHhCCEEEE
Confidence 000111 368999999997521110 00000 011344566788999999
Q ss_pred EeeCCCC-CCcccHHHHHHHHhhcCCCeEEEEecccCCCchh
Q 011511 279 LVDGQAG-LTAADEEIADWLRKNYMDKFIILAVNKCESPRKG 319 (484)
Q Consensus 279 VvD~~~~-~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~ 319 (484)
|+|+... ....+..++..+... +.|+++|+||+|+....
T Consensus 195 VvDa~~~~~~~~~~~~l~~l~~~--~~pvilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 195 LFDAHKLEISDEFSEAIGALRGH--EDKIRVVLNKADMVETQ 234 (550)
T ss_dssp EEETTSCCCCHHHHHHHHHTTTC--GGGEEEEEECGGGSCHH
T ss_pred EEeCCcCCCCHHHHHHHHHHHhc--CCCEEEEEECCCccCHH
Confidence 9998763 444444455444433 67899999999998643
No 214
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.26 E-value=1.2e-11 Score=107.78 Aligned_cols=102 Identities=29% Similarity=0.433 Sum_probs=69.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|.|.+.....+...+++|++.....+.. ++..+.++||||..... . .........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~------~-~~~~~~~~~ 73 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGD------K-WEKKIQEKV 73 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEE-TTEEEEEEECGGGCSSS------S-CCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEe-CCceEEEEECCCCCCcc------c-hHHHHHHHH
Confidence 479999999999999999999987655677788888766555543 56789999999986532 1 112223344
Q ss_pred HHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 452 FRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
...++.+|++++|+|+..+++..+.++.++
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 103 (161)
T 2dyk_A 74 DRALEDAEVVLFAVDGRAELTQADYEVAEY 103 (161)
T ss_dssp HHHTTTCSEEEEEEESSSCCCHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEECCCcccHhHHHHHHH
Confidence 456789999999999998899888777654
No 215
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.25 E-value=1.5e-11 Score=116.65 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=69.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
++|+++|.+|+|||||+|+|+|.. +.++..||+|.+.....+.. ++..+.+|||||+........ .....+.+.+.
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~--~~~~~e~i~~~ 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAE--GISQDEQIAAQ 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC--------CHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEE-CCeEEEEEeCCCccccccccc--CCCHHHHHHHH
Confidence 479999999999999999999985 67888999998877666653 567899999999976532100 00222333444
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+...+.+|++++|+|+..
T Consensus 78 ~~~~~~~d~vi~VvDas~ 95 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH 95 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG
T ss_pred HHhhCCCCEEEEEeeCCC
Confidence 444589999999999875
No 216
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.25 E-value=2.1e-11 Score=132.08 Aligned_cols=115 Identities=18% Similarity=0.230 Sum_probs=84.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcc-----------eee------ecCCCceeeeeEEEEEeC-------CceeeEee
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNR-----------AIV------VDEPGVTRDRMYGRSFWG-------EHEFMLVD 217 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~-----------~~~------~~~~~~t~~~~~~~~~~~-------~~~i~liD 217 (484)
+.++|+|+||.++|||||..+|+-... ... ....|.|.....-.+.|. +..++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 467899999999999999999862210 000 112344554444455554 46799999
Q ss_pred ccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHH
Q 011511 218 TGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (484)
Q Consensus 218 tpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l 297 (484)
|||+.++. ..+.+++..+|.+|+|+|+.++...+...+++.+
T Consensus 92 TPGHvDF~--------------------------------------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a 133 (709)
T 4fn5_A 92 TPGHVDFT--------------------------------------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA 133 (709)
T ss_dssp CCSCTTCH--------------------------------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred CCCCcccH--------------------------------------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH
Confidence 99998743 3556888999999999999999999888888888
Q ss_pred HhhcCCCeEEEEecccCCC
Q 011511 298 RKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 298 ~~~~~~~p~ilV~NK~Dl~ 316 (484)
.+. +.|.++++||+|..
T Consensus 134 ~~~--~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 134 NKY--GVPRIVYVNKMDRQ 150 (709)
T ss_dssp HHH--TCCEEEEEECSSST
T ss_pred HHc--CCCeEEEEcccccc
Confidence 777 89999999999964
No 217
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.24 E-value=1.3e-11 Score=118.09 Aligned_cols=103 Identities=22% Similarity=0.294 Sum_probs=75.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.....+...+++|+......+. .++..+.||||||+.+..... ......
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~-------~~~~~~ 110 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYIN-------DMALNI 110 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEEC-------HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccch-------HHHHHH
Confidence 468999999999999999999999877788888988877665554 367789999999997653211 111111
Q ss_pred HHH--HhhcCcEEEEEEeCcc-cccHHhhhhhhh
Q 011511 451 AFR--AIRRSDVVALVIEAMA-CITEQADWRDHR 481 (484)
Q Consensus 451 ~~~--~~~~~d~~l~V~~~~~-~~~~~d~~~~~~ 481 (484)
..+ ..+.+|++++|+|++. +++..+..+++.
T Consensus 111 i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~ 144 (270)
T 1h65_A 111 IKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKA 144 (270)
T ss_dssp HHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHH
T ss_pred HHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHH
Confidence 111 2357999999988754 688877666544
No 218
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.24 E-value=2.3e-11 Score=116.59 Aligned_cols=94 Identities=23% Similarity=0.397 Sum_probs=71.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|+|.. +.++..+|+|++.....+.. .+..+.+|||||+.+....... ....+.+.+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~--~~~~e~i~~~ 79 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQ--TSLDEQIACH 79 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC------CCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEe-CCCceEEEECcCCCcccccccc--CCHHHHHHHH
Confidence 589999999999999999999987 67899999999877766664 5678999999999765421110 1122234445
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+...+.+|++++|+|+..
T Consensus 80 ~~~~~~~d~ii~VvD~~~ 97 (274)
T 3i8s_A 80 YILSGDADLLINVVDASN 97 (274)
T ss_dssp HHHHTCCSEEEEEEEGGG
T ss_pred HHhhcCCCEEEEEecCCC
Confidence 556689999999999875
No 219
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.23 E-value=1.9e-11 Score=116.41 Aligned_cols=104 Identities=23% Similarity=0.246 Sum_probs=75.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.....+...+++|+......+. .++..+.||||||+.+.... . ....+.
T Consensus 36 ~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~------~-~~~~~~ 107 (262)
T 3def_A 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYV------N-HQALEL 107 (262)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEE------C-HHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccc------h-HHHHHH
Confidence 468999999999999999999999877788888888877666554 46779999999999765321 1 111121
Q ss_pred HHHH--hhcCcEEEEEEeCcc-cccHHhhhhhhhc
Q 011511 451 AFRA--IRRSDVVALVIEAMA-CITEQADWRDHRW 482 (484)
Q Consensus 451 ~~~~--~~~~d~~l~V~~~~~-~~~~~d~~~~~~~ 482 (484)
..+. ...+|++++|++++. ++++.+..+++++
T Consensus 108 i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l 142 (262)
T 3def_A 108 IKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAI 142 (262)
T ss_dssp HHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 2222 247899999987754 6888877666543
No 220
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.23 E-value=1.9e-11 Score=121.38 Aligned_cols=89 Identities=31% Similarity=0.367 Sum_probs=65.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeC---------------------CceeeEeeccccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWG---------------------EHEFMLVDTGGVL 222 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~---------------------~~~i~liDtpG~~ 222 (484)
++|+|+|.+|+|||||+|+|++.. ..+.+++++|.....+...+. +..+.+|||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 689999999999999999999864 456677888887777665442 3468999999997
Q ss_pred cccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC
Q 011511 223 NVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (484)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~ 284 (484)
........+. +.++..+..+|++++|+|+..
T Consensus 81 ~~a~~~~~lg-------------------------------~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHKGEGLG-------------------------------NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCSSSCTT-------------------------------HHHHHHHHTCSEEEEEEECCC
T ss_pred ccccccchHH-------------------------------HHHHHHHHhCCEEEEEEECCC
Confidence 6443222111 345566788899999998764
No 221
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.22 E-value=9.4e-12 Score=136.84 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeee---------------cCCCceeeeeEEEEEeC----------------Cc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVV---------------DEPGVTRDRMYGRSFWG----------------EH 211 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~---------------~~~~~t~~~~~~~~~~~----------------~~ 211 (484)
.++|+|+|++|+|||||+++|++....... ...+.|.......+.+. +.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 568999999999999999999864211111 11233443333333343 56
Q ss_pred eeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 212 EFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 212 ~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
.+.+|||||+.++. .....++..+|.+|+|+|+..+......
T Consensus 99 ~i~liDTPG~~df~--------------------------------------~~~~~~l~~aD~ailVvDa~~g~~~qt~ 140 (842)
T 1n0u_A 99 LINLIDSPGHVDFS--------------------------------------SEVTAALRVTDGALVVVDTIEGVCVQTE 140 (842)
T ss_dssp EEEEECCCCCCSSC--------------------------------------HHHHHHHHTCSEEEEEEETTTBSCHHHH
T ss_pred eEEEEECcCchhhH--------------------------------------HHHHHHHHhCCEEEEEEeCCCCCCHHHH
Confidence 78999999997643 2344677889999999999988777766
Q ss_pred HHHHHHHhhcCCCeEEEEecccCCC
Q 011511 292 EIADWLRKNYMDKFIILAVNKCESP 316 (484)
Q Consensus 292 ~~~~~l~~~~~~~p~ilV~NK~Dl~ 316 (484)
..+..+... +.|+++|+||+|+.
T Consensus 141 ~~~~~~~~~--~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 141 TVLRQALGE--RIKPVVVINKVDRA 163 (842)
T ss_dssp HHHHHHHHT--TCEEEEEEECHHHH
T ss_pred HHHHHHHHc--CCCeEEEEECCCcc
Confidence 655555444 89999999999986
No 222
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.22 E-value=3.1e-12 Score=118.41 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=52.2
Q ss_pred cCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchh---hhhhHHHH---hcCCCceeeecccCCCCch
Q 011511 273 SCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKG---IMQVSEFW---SLGFSPLPISAISGTGTGE 346 (484)
Q Consensus 273 ~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~---~~~~~~~~---~~~~~~i~vSa~~g~gi~~ 346 (484)
.+.+++|+|+..+... ...+.... +.|.++|+||+|+.... ........ ....+++++||++|.|+++
T Consensus 130 ~~~~i~vvd~~~~~~~----~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~ 203 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDDV----VEKHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEE 203 (221)
T ss_dssp CSEEEEEEEGGGCTTH----HHHCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHH
T ss_pred cCcEEEEEeCCCcchh----hhhhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHH
Confidence 4678999998765321 11222222 57899999999986531 11111111 2245789999999999999
Q ss_pred hhHHHHHHhhh
Q 011511 347 LLDLVCSELKK 357 (484)
Q Consensus 347 L~~~i~~~l~~ 357 (484)
+++++.+.+..
T Consensus 204 l~~~l~~~~~~ 214 (221)
T 2wsm_A 204 WIDFLRGILNV 214 (221)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999877643
No 223
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.20 E-value=4.8e-11 Score=107.75 Aligned_cols=106 Identities=21% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHH--
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL-- 446 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~-- 446 (484)
...+|+++|.+|+|||||+|+|++.. ...+.+.+|+|+....... +..+.+|||||+....... .....+
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~l~Dt~G~~~~~~~~---~~~~~~~~ 94 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII----NDELHFVDVPGYGFAKVSK---SEREAWGR 94 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE----TTTEEEEECCCBCCCSSCH---HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE----CCcEEEEECCCCCccccCH---HHHHHHHH
Confidence 34689999999999999999999986 4556777888877544332 3479999999986542110 001111
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 447 SVNRAFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.....++....+|++++|+|+..+++..+.++++++
T Consensus 95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 130 (195)
T 1svi_A 95 MIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFL 130 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 233333444555999999999999999887766543
No 224
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=7.8e-11 Score=118.91 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=73.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCC------CceeeeeEEE--EEeCC--ceeeEeeccccccccCCCchh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEP------GVTRDRMYGR--SFWGE--HEFMLVDTGGVLNVSKSQPNI 231 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~------~~t~~~~~~~--~~~~~--~~i~liDtpG~~~~~~~~~~~ 231 (484)
-.++|+|+|++|+|||||+|+|+|......+ .. ..|....... +...+ ..+++|||+|+........ .
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~-~ 107 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN-C 107 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC-----CCEEEEEECC------CEEEEEEECC------------
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh-h
Confidence 3568999999999999999999987532111 11 0111110000 11112 2579999999865321100 0
Q ss_pred hhhhhhhhhcccCCCchhHHHHHHhhc-hHHHHH---HHHHHhhh--cCeEEEEeeCC-CCCCcccHHHHHHHHhhcCCC
Q 011511 232 MEDLAITTTIGMEGIPLATREAAVARM-PSMIER---QATAAIEE--SCVIIFLVDGQ-AGLTAADEEIADWLRKNYMDK 304 (484)
Q Consensus 232 ~~~~~~~~~~~~~G~~~~~~~~~v~~~-~~~~~~---~~~~~~~~--~d~vilVvD~~-~~~~~~~~~~~~~l~~~~~~~ 304 (484)
... +...+... ..++.+ .+.+.+.. +++++|+++++ .++...+..++..+. .+.
T Consensus 108 ~~~----------------i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v 168 (418)
T 2qag_C 108 WQP----------------VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKV 168 (418)
T ss_dssp CHH----------------HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTS
T ss_pred HHH----------------HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccC
Confidence 000 00001100 000000 01111222 34556665543 345555544555443 378
Q ss_pred eEEEEecccCCCchhhhhh-----H-HHHhcCCCceeeecccCCCCchhhHHHHHHh
Q 011511 305 FIILAVNKCESPRKGIMQV-----S-EFWSLGFSPLPISAISGTGTGELLDLVCSEL 355 (484)
Q Consensus 305 p~ilV~NK~Dl~~~~~~~~-----~-~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l 355 (484)
++++|+||+|+........ . .....+++++.+|+.++.++.+++..+...+
T Consensus 169 ~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 169 NIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp EEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred cEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 9999999999976432221 1 1223477889999999999988777665544
No 225
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.18 E-value=4.6e-11 Score=107.66 Aligned_cols=107 Identities=24% Similarity=0.225 Sum_probs=75.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.....+.+.+|+|+...... .+.++.+|||||+..... ..............
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKV-SKKERMLWKRLVED 97 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCC-CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE----ECCcEEEEECCCCccccC-ChhhHHHHHHHHHH
Confidence 4589999999999999999999988667778888887654322 245789999999754321 10000111112344
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhhhc
Q 011511 451 AFRAIRRSDVVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.++....+|++++|+|+..+++..+..+++++
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~ 129 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWM 129 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHHHHHHHH
Confidence 55556677999999999988888888776553
No 226
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.16 E-value=9.3e-11 Score=111.37 Aligned_cols=161 Identities=17% Similarity=0.107 Sum_probs=96.0
Q ss_pred CCCeEEEEcCCCCChhHHHHHHh-----CCcceeeecCCCceee------------eeEEE----E--------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLV-----GGNRAIVVDEPGVTRD------------RMYGR----S-------------- 206 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~-----~~~~~~~~~~~~~t~~------------~~~~~----~-------------- 206 (484)
+...+++.|..||||||+++.|. |.+...+...++.+.. ..... .
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLM 92 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHh
Confidence 46788999999999999999998 7665555544431110 00000 0
Q ss_pred -----------E-eCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcC
Q 011511 207 -----------F-WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESC 274 (484)
Q Consensus 207 -----------~-~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 274 (484)
. ..+..+.+|||||......... +...+...+.. +
T Consensus 93 ~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~--------------------------------l~~~~~~~~~~-~ 139 (262)
T 1yrb_A 93 EKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHE--------------------------------FGVRLMENLPY-P 139 (262)
T ss_dssp TTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSH--------------------------------HHHHHHHTSSS-C
T ss_pred hhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhh--------------------------------hHHHHHHHHhh-c
Confidence 0 0123688999999754211000 01222234455 8
Q ss_pred eEEEEeeCCCCCCcccHH-HH----HHHHhhcCCCeEEEEecccCCCchhhhh-hHH-----------------------
Q 011511 275 VIIFLVDGQAGLTAADEE-IA----DWLRKNYMDKFIILAVNKCESPRKGIMQ-VSE----------------------- 325 (484)
Q Consensus 275 ~vilVvD~~~~~~~~~~~-~~----~~l~~~~~~~p~ilV~NK~Dl~~~~~~~-~~~----------------------- 325 (484)
++++++|+.......+.. .. ..... .+.|+++|+||+|+....... ...
T Consensus 140 ~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 217 (262)
T 1yrb_A 140 LVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMA 217 (262)
T ss_dssp EEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHH
T ss_pred eEEeccchhhhcCHHHHHHHHHHHHHHhcc--cCCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhH
Confidence 999999976544433322 11 11112 278999999999987543110 000
Q ss_pred ------HHh--cCCCceeeecccCCCCchhhHHHHHHhhh
Q 011511 326 ------FWS--LGFSPLPISAISGTGTGELLDLVCSELKK 357 (484)
Q Consensus 326 ------~~~--~~~~~i~vSa~~g~gi~~L~~~i~~~l~~ 357 (484)
... ...+++++||+++.|+++|++++.+.++.
T Consensus 218 ~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 218 YKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 011 22478999999999999999999887653
No 227
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.15 E-value=3.4e-11 Score=118.71 Aligned_cols=148 Identities=24% Similarity=0.248 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhC------CcceeeecCCCceee-----------------e-eEEE------------
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVG------GNRAIVVDEPGVTRD-----------------R-MYGR------------ 205 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~------~~~~~~~~~~~~t~~-----------------~-~~~~------------ 205 (484)
....|+|+|++|+|||||+|+|.| .+....+..+..+.. . ....
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~t 133 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVA 133 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccchH
Confidence 356899999999999999999983 343333333322110 0 0000
Q ss_pred ---------EEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeE
Q 011511 206 ---------SFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVI 276 (484)
Q Consensus 206 ---------~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~v 276 (484)
+...+.++.++||||+.+.. ......+|++
T Consensus 134 r~~~e~~~~~~~~~~~~iliDT~Gi~~~~-----------------------------------------~~v~~~~d~v 172 (337)
T 2qm8_A 134 AKTRETMLLCEAAGFDVILVETVGVGQSE-----------------------------------------TAVADLTDFF 172 (337)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSSSCH-----------------------------------------HHHHTTSSEE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCcch-----------------------------------------hhHHhhCCEE
Confidence 11257789999999986310 0223678999
Q ss_pred EEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhh-----hhhHHH-H---h-----cCCCceeeecccCC
Q 011511 277 IFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGI-----MQVSEF-W---S-----LGFSPLPISAISGT 342 (484)
Q Consensus 277 ilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~-----~~~~~~-~---~-----~~~~~i~vSa~~g~ 342 (484)
++|+|+..+... ..+...+. ..+.++|+||+|+..... .+.... . . ...+++++||+++.
T Consensus 173 l~v~d~~~~~~~--~~i~~~i~----~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~ 246 (337)
T 2qm8_A 173 LVLMLPGAGDEL--QGIKKGIF----ELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGK 246 (337)
T ss_dssp EEEECSCC--------CCTTHH----HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTB
T ss_pred EEEEcCCCcccH--HHHHHHHh----ccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCC
Confidence 999997533110 00000111 235677889999754211 111111 1 1 12467899999999
Q ss_pred CCchhhHHHHHHhh
Q 011511 343 GTGELLDLVCSELK 356 (484)
Q Consensus 343 gi~~L~~~i~~~l~ 356 (484)
|+++|++.|.+...
T Consensus 247 gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 247 GLDSLWSRIEDHRS 260 (337)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988654
No 228
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.15 E-value=1.1e-10 Score=111.78 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecC-------CCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSP-------ISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGST 442 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~-------~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~ 442 (484)
.+|+++|.+|+|||||+|+|++...+.... .++++.+.....+. .+|. .+.||||||+.+.......-..
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK-EGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEEC-C--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEe-cCCeEEEEEEEECCCccccccchhhHHH
Confidence 489999999999999999999988776543 33333333332332 2343 7899999999654211000011
Q ss_pred hhHHHH---HHHHHHh----------hcCcEEEEEEeCcc-cccHHhhhhhhhcC
Q 011511 443 TEALSV---NRAFRAI----------RRSDVVALVIEAMA-CITEQADWRDHRWG 483 (484)
Q Consensus 443 ~~~~~~---~~~~~~~----------~~~d~~l~V~~~~~-~~~~~d~~~~~~~~ 483 (484)
...+.. ...+... ..+|+++++++... ++++.|..+++++.
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~ 142 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH 142 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 111111 1122211 12678888886554 89999998887653
No 229
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.13 E-value=9.2e-11 Score=112.23 Aligned_cols=90 Identities=28% Similarity=0.425 Sum_probs=69.6
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|+|... .++..+|+|.+.....+. +.+..+.+|||||+.+... ......+.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~------~~~~~~~~~~ 75 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTA------HSIDELIARN 75 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCS------SCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEE-ECCceEEEEeCCCcccccc------CCHHHHHHHH
Confidence 5899999999999999999999854 788999999887666555 3567899999999876432 1223334444
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+...+.+|++++|+|+..
T Consensus 76 ~~~~~~~d~vi~v~D~~~ 93 (271)
T 3k53_A 76 FILDGNADVIVDIVDSTC 93 (271)
T ss_dssp HHHTTCCSEEEEEEEGGG
T ss_pred hhhccCCcEEEEEecCCc
Confidence 455578999999999875
No 230
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.12 E-value=1.9e-10 Score=112.32 Aligned_cols=111 Identities=21% Similarity=0.293 Sum_probs=67.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCccee-----ecCCC---Cceecc--------------------------------
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----VSPIS---GTTRDA-------------------------------- 409 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~-----~~~~~---gtt~~~-------------------------------- 409 (484)
..++|+++|.+|+|||||+|+|+|...+. +...| .++++.
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 45689999999999999999999987632 22334 233320
Q ss_pred ------------------cceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeC-ccc
Q 011511 410 ------------------IDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEA-MAC 470 (484)
Q Consensus 410 ------------------~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~-~~~ 470 (484)
....+..+.+.++.+|||||+........ ...........+...++.+|++++|+|+ ...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQ-PTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC----------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCC-chhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 00111223457899999999975221000 0123344556677788999999999996 556
Q ss_pred ccHHhh-hhhhh
Q 011511 471 ITEQAD-WRDHR 481 (484)
Q Consensus 471 ~~~~d~-~~~~~ 481 (484)
++.++. .++++
T Consensus 182 ~~~~~~~~i~~~ 193 (315)
T 1jwy_B 182 LANSDALQLAKE 193 (315)
T ss_dssp STTCSHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 665553 55544
No 231
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.12 E-value=4.6e-11 Score=120.90 Aligned_cols=102 Identities=34% Similarity=0.405 Sum_probs=69.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.....+...+|+|++.....+.......+.+|||||+.+.... .......
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l-------~~~~~~~ 106 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL-------GRLRVEK 106 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT-------CCCCHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch-------hHHHHHH
Confidence 458999999999999999999998877778889999998877776544448999999999765321 1222455
Q ss_pred HHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
+...++.+|++++|+|+ .+++.+...+++
T Consensus 107 ~~~~l~~aD~vllVvD~--~~~~~~~~~l~~ 135 (423)
T 3qq5_A 107 ARRVFYRADCGILVTDS--APTPYEDDVVNL 135 (423)
T ss_dssp HHHHHTSCSEEEEECSS--SCCHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEeC--CChHHHHHHHHH
Confidence 66778899999999998 677777666644
No 232
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.11 E-value=1.7e-10 Score=110.18 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=65.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|||||||+|.|.|.. +.++..||+|.+.....+.. +..+.+|||||...... ....+.+.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~-~~v~~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~------~~~~e~v~~~ 74 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN-QRVGNWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSP------YSPEAKVARD 74 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC-CCCCSSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSC------SSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCCcEEEEEEEEec--CCeEEEEECCCcCccCC------CChHHHHHHH
Confidence 479999999999999999999975 45788899998876655543 67899999999875421 1122222333
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+.....+|++++|+|+..
T Consensus 75 ~~~~~~~d~vi~V~D~t~ 92 (272)
T 3b1v_A 75 YLLSQRADSILNVVDATN 92 (272)
T ss_dssp HHHTTCCSEEEEEEEGGG
T ss_pred HHhcCCCCEEEEEecCCc
Confidence 223357999999999865
No 233
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.11 E-value=3.9e-10 Score=109.20 Aligned_cols=111 Identities=22% Similarity=0.272 Sum_probs=68.9
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcce-----eecCCCC----------------------ceecccce----------
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG----------------------TTRDAIDT---------- 412 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~-----~~~~~~g----------------------tt~~~~~~---------- 412 (484)
..++|+++|.+|+|||||+|+|+|.... .+...|+ +|++.+..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999998764 3334454 44431110
Q ss_pred -------------eeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEE-EEEeCcccccHHhh-h
Q 011511 413 -------------EFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVA-LVIEAMACITEQAD-W 477 (484)
Q Consensus 413 -------------~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l-~V~~~~~~~~~~d~-~ 477 (484)
.+..+.+.++.+|||||+........ ...........+...++.++.++ +|+|+...++.++. .
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSS-CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCC-CchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 01112246899999999975321000 01122233344445667777555 79999988888774 3
Q ss_pred hhhh
Q 011511 478 RDHR 481 (484)
Q Consensus 478 ~~~~ 481 (484)
++++
T Consensus 184 ~~~~ 187 (299)
T 2aka_B 184 IAKE 187 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 234
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.11 E-value=2.5e-10 Score=108.35 Aligned_cols=90 Identities=30% Similarity=0.430 Sum_probs=67.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|+|+|.. +.++..||+|.+.....+.. .+..+.+|||||....... ...+.+.+.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~-~~~~~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~------~~~e~v~~~ 77 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK-QYVANWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYS------SIDEKIARD 77 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSS------SHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCC------CHHHHHHHH
Confidence 579999999999999999999976 45788899998876666553 5678999999998754321 112223333
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+.....+|++++|+|+..
T Consensus 78 ~~~~~~~d~ii~V~D~t~ 95 (258)
T 3a1s_A 78 YLLKGDADLVILVADSVN 95 (258)
T ss_dssp HHHHSCCSEEEEEEETTS
T ss_pred HHhhcCCCEEEEEeCCCc
Confidence 333478999999999874
No 235
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.08 E-value=1.3e-10 Score=114.74 Aligned_cols=90 Identities=26% Similarity=0.324 Sum_probs=62.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC----------------CCcEEEEEcCCCccCcc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~----------------g~~i~liDTPG~~~~~~ 435 (484)
.+|+++|.||+|||||+|+|.+.. +.+...|++|++.....+...+ +..+.++||||+.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 579999999999999999999986 6778888999887665554332 14699999999975321
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
....+....+..++.+|++++|+|+.+
T Consensus 82 -------~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 -------KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp -------HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred -------ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 011111223456799999999999875
No 236
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.07 E-value=4e-10 Score=99.10 Aligned_cols=90 Identities=33% Similarity=0.569 Sum_probs=59.6
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|.|.+.. +.++..+|+|++.....+. .++..+.+|||||...... ......+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~------~~~~~~~~~~ 75 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTA------NSIDEIIARD 75 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS-SSCC-----CCCCCEEEEE-ETTEEEEEEECCCCSCSSS------SSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-eeccCCCCcceeeeEEEEE-ECCcEEEEEECCCcccCCC------cchhHHHHHH
Confidence 479999999999999999999864 3456677888776554444 3567899999999865321 1112222233
Q ss_pred HHHhhcCcEEEEEEeCcc
Q 011511 452 FRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~ 469 (484)
+.....+|++++|+|+..
T Consensus 76 ~~~~~~~~~~i~v~D~~~ 93 (165)
T 2wji_A 76 YIINEKPDLVVNIVDATA 93 (165)
T ss_dssp HHHHHCCSEEEEEEETTC
T ss_pred HHhcCCCCEEEEEecCCc
Confidence 333358999999999865
No 237
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.06 E-value=3.7e-11 Score=119.96 Aligned_cols=149 Identities=20% Similarity=0.176 Sum_probs=93.2
Q ss_pred CeEEEEcCCCCChhHHHHHHhCC-----cceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhh
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGG-----NRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAIT 238 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~ 238 (484)
.+|+++|.+|+|||||+|+|++. ....++..+++|....... + +..+.++||||+.........+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~----- 234 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVDA----- 234 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSCT-----
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHhH-----
Confidence 57999999999999999999986 4567888999988766533 2 345899999999754322211111
Q ss_pred hhcccCCCchhHHHHHHhhchHHHHHHHHHHh---hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCC
Q 011511 239 TTIGMEGIPLATREAAVARMPSMIERQATAAI---EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 239 ~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~---~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
..+..+ ...+.+++++++...........+.++.. .+.|+++++||+|.
T Consensus 235 --------------------------~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~--~~~~~~~v~~k~d~ 286 (369)
T 3ec1_A 235 --------------------------RDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKG--GRRSFVCYMANELT 286 (369)
T ss_dssp --------------------------TTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSC
T ss_pred --------------------------HHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccC--CCceEEEEecCCcc
Confidence 111222 56799999999743211111111222322 36899999999998
Q ss_pred Cchhh-hhhHHH--HhcCCCceeeecccCCCCchhh
Q 011511 316 PRKGI-MQVSEF--WSLGFSPLPISAISGTGTGELL 348 (484)
Q Consensus 316 ~~~~~-~~~~~~--~~~~~~~i~vSa~~g~gi~~L~ 348 (484)
..... ....++ ...+..+.+.++....++.++.
T Consensus 287 ~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~~~l~ 322 (369)
T 3ec1_A 287 VHRTKLEKADSLYANQLGELLSPPSKRYAAEFPPLV 322 (369)
T ss_dssp EEEEEGGGHHHHHHHHBTTTBCSSCGGGTTTCCCEE
T ss_pred cccccHHHHHHHHHHhcCCccCCCCchhhhhccCcE
Confidence 75432 222222 2345566677776666665544
No 238
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.06 E-value=7.2e-10 Score=110.15 Aligned_cols=111 Identities=22% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcce-----eecCCCC----------------------ceecccc-----------
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRT-----IVSPISG----------------------TTRDAID----------- 411 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~-----~~~~~~g----------------------tt~~~~~----------- 411 (484)
..++|+++|.+|+|||||+|+|+|.... .+...|+ +|++.+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3569999999999999999999998754 2333444 3333100
Q ss_pred ------------eeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHh-hcCcEEEEEEeCcccccHHhhh-
Q 011511 412 ------------TEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAI-RRSDVVALVIEAMACITEQADW- 477 (484)
Q Consensus 412 ------------~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~l~V~~~~~~~~~~d~~- 477 (484)
..+..+++.++.||||||+......+.+.. ........+...+ ...+++|+|+++...++.++..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPD-IEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTT-HHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchh-HHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 011112356899999999976432111111 1111112222333 3456888889988888877753
Q ss_pred hhhh
Q 011511 478 RDHR 481 (484)
Q Consensus 478 ~~~~ 481 (484)
+++.
T Consensus 189 i~~~ 192 (353)
T 2x2e_A 189 VAKE 192 (353)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 239
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.06 E-value=4.9e-10 Score=104.13 Aligned_cols=95 Identities=25% Similarity=0.340 Sum_probs=61.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|++.... +...+++|++....... ..+..+.+|||||..+..... ........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~-----~~~~~~~~ 101 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFD-HKLNKYQIIDTPGLLDRAFEN-----RNTIEMTT 101 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEE-ETTEEEEEEECTTTTTSCGGG-----CCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeee-cCCCeEEEEECCCCcCcccch-----hhhHHHHH
Confidence 468999999999999999999998643 66778888776544433 245689999999996532110 00000111
Q ss_pred HHHHhhcCcEEEEEEeCccccc
Q 011511 451 AFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
.....+.+|++++|+|+.++.+
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s 123 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCG 123 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTS
T ss_pred HHHhhccccEEEEEEecccccC
Confidence 1223678899999999987644
No 240
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=4.7e-10 Score=111.59 Aligned_cols=91 Identities=27% Similarity=0.318 Sum_probs=61.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
.|+++|.+|+|||||+|+|.|... .+...+++|++.....+.. +|..+.++||||+..... ....+. ...++
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~-~~~~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp----~~lve~--f~~tl 252 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ-KVDTKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP----PQIVDA--FFVTL 252 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC------------CCSCEEEEEE-TTEEEEEEECCCBCSSCC----GGGHHH--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC----HHHHHH--HHHHH
Confidence 599999999999999999999864 5677889999887766664 567899999999743210 112222 34556
Q ss_pred HHhhcCcEEEEEEeCcccc
Q 011511 453 RAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~ 471 (484)
..++.+|++++|+|+.+..
T Consensus 253 ~~~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 253 SEAKYSDALILVIDSTFSE 271 (364)
T ss_dssp HGGGGSSEEEEEEETTSCH
T ss_pred HHHHhCCEEEEEEECCCCc
Confidence 6789999999999987654
No 241
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.02 E-value=2.5e-10 Score=113.84 Aligned_cols=93 Identities=26% Similarity=0.289 Sum_probs=52.8
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC----------------CCcEEEEEcCCCcc
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRK 432 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~----------------g~~i~liDTPG~~~ 432 (484)
..+.+++++|.||+|||||+|+|.+... .+...|++|.+.....+...+ +.++.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3456899999999999999999999865 778888999876655544322 23589999999975
Q ss_pred CccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
... ....+.......++.+|++++|+|+.+
T Consensus 99 ~as-------~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 99 GAH-------NGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp ---------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred ccc-------hhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 321 111112234567899999999999863
No 242
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.00 E-value=1.6e-09 Score=116.24 Aligned_cols=144 Identities=19% Similarity=0.200 Sum_probs=81.8
Q ss_pred eecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCC-----------
Q 011511 336 ISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISG----------- 404 (484)
Q Consensus 336 vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~g----------- 404 (484)
.++..+.|++++...+.+......... .......++|+++|.+++|||||+|+|+|...+.++..+.
T Consensus 18 ~~~~~~~~~~~li~~inkl~d~l~~lg--~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~ 95 (772)
T 3zvr_A 18 GSHMGNRGMEDLIPLVNRLQDAFSAIG--QNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVN 95 (772)
T ss_dssp -------CGGGHHHHHHHHHHHHHTTT--CCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEE
T ss_pred ccccccccHHHHHHHHHHHHHHHHhcC--ccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeec
Confidence 455667788888777655433222110 0112345799999999999999999999987644333221
Q ss_pred ---------------------------------------ceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhH
Q 011511 405 ---------------------------------------TTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (484)
Q Consensus 405 ---------------------------------------tt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~ 445 (484)
.+.+.+...+..++..++++|||||+......+.+ .....
T Consensus 96 ~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp-~di~~ 174 (772)
T 3zvr_A 96 STTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQP-PDIEF 174 (772)
T ss_dssp CSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCC-CHHHH
T ss_pred CCcchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCc-HHHHH
Confidence 11122222333345678999999999863211111 11111
Q ss_pred HHHHHHHHHh-hcCcEEEEEEeCcccccHHhh-hhhhhc
Q 011511 446 LSVNRAFRAI-RRSDVVALVIEAMACITEQAD-WRDHRW 482 (484)
Q Consensus 446 ~~~~~~~~~~-~~~d~~l~V~~~~~~~~~~d~-~~~~~~ 482 (484)
.....+...+ ..+|++|+|+|+...++.+|. .+++++
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L 213 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV 213 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH
Confidence 1111222222 578999999999998988887 566554
No 243
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.97 E-value=5.9e-10 Score=111.09 Aligned_cols=91 Identities=24% Similarity=0.255 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCc-----------------eeeEeeccccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEH-----------------EFMLVDTGGVLNV 224 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~i~liDtpG~~~~ 224 (484)
...+|+|+|.+|||||||+|+|++... .++++|++|.....+.+.+.+. .+.+|||||+...
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 357899999999999999999998764 6788899999888888776542 3899999999764
Q ss_pred cCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC
Q 011511 225 SKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (484)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~ 284 (484)
...... +...+...+..+|++++|+|+..
T Consensus 100 as~~~g-------------------------------lg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 100 AHNGQG-------------------------------LGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --------------------------------------CCHHHHHHHTSSSEEEEEEC--
T ss_pred cchhhH-------------------------------HHHHHHHHHHhcCeEEEEEecCC
Confidence 332111 11345677899999999999764
No 244
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.97 E-value=6.2e-11 Score=118.25 Aligned_cols=150 Identities=19% Similarity=0.201 Sum_probs=86.6
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCc------ceeeecCCCceeeeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhh
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGN------RAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.+|+++|.+|+|||||+|+|++.. ...++..+++|....... + +..+.++||||+.........+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~---- 233 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--L-DEESSLYDTPGIINHHQMAHYVGK---- 233 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--S-SSSCEEEECCCBCCTTSGGGGSCH----
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--e-cCCeEEEeCCCcCcHHHHHHHhhH----
Confidence 589999999999999999999852 345788899988766533 3 234899999999764322211110
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHH--hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAA--IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~--~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
...... ....+.+++++++...........+.++.. .+.|+++++||+|.
T Consensus 234 --------------------------~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~--~~~~~~~v~nk~d~ 285 (368)
T 3h2y_A 234 --------------------------QSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSG--GRRAFTCHFSNRLT 285 (368)
T ss_dssp --------------------------HHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEES--SSEEEEEEECTTSC
T ss_pred --------------------------HHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecC--CCceEEEEecCccc
Confidence 111111 245788999998632211111111222332 26899999999998
Q ss_pred Cchhhh-hhHHHH--hcCCCceeeecccCCCCchhh
Q 011511 316 PRKGIM-QVSEFW--SLGFSPLPISAISGTGTGELL 348 (484)
Q Consensus 316 ~~~~~~-~~~~~~--~~~~~~i~vSa~~g~gi~~L~ 348 (484)
...... ....++ ..+..+.+.++....++.++.
T Consensus 286 ~~~~~~~~~~~~~~~~~g~~l~p~~~~~~~~~~~l~ 321 (368)
T 3h2y_A 286 IHRTKLEKADELYKNHAGDLLSPPTPEELENMPELV 321 (368)
T ss_dssp EEEEEHHHHHHHHHHHBTTTBCSSCHHHHHTSCCEE
T ss_pred cccccHHHHHHHHHHHhCCccCCCchhhHhhccCcE
Confidence 764322 222222 344455666665555555443
No 245
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.97 E-value=1.1e-09 Score=114.75 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=66.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeee------cCCCCcEEEEEcCCCccCccccCCCCchh
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFT------GPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~------~~~g~~i~liDTPG~~~~~~~~~~~~~~~ 444 (484)
..+|+++|.+|+|||||+|+|+|..... ..+|+|++.....+. ...+..++|+||||+........ .....
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~-~~~~~ 114 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDN-QNDSW 114 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCC-TTHHH
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccch-hHHHH
Confidence 3589999999999999999999986432 556666555444432 23577899999999987543111 11111
Q ss_pred HHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 445 ~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+.+ ..+ -++ ++|+|+.+.+++++..++..
T Consensus 115 ~fal----a~l-lss--~lv~n~~~~i~~~dl~~l~~ 144 (592)
T 1f5n_A 115 IFAL----AVL-LSS--TFVYNSIGTINQQAMDQLYY 144 (592)
T ss_dssp HHHH----HHH-HCS--EEEEEEESCSSHHHHHTTHH
T ss_pred HHHH----HHH-hcC--eEEEECCCCccHHHHHHHHH
Confidence 1111 111 123 56778889999999988753
No 246
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.97 E-value=1.7e-09 Score=96.86 Aligned_cols=91 Identities=33% Similarity=0.553 Sum_probs=63.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|++.. +.+...+|+|.+.....+.. ++..+.+|||||...... ......+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~-~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~------~~~~~~~~~ 78 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN-VYIGNWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTA------NSIDEIIAR 78 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC-EEEEECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSS------SSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-ccccCCCCeeccceEEEEEe-CCcEEEEEECCCcCcccc------ccHHHHHHH
Confidence 3589999999999999999999975 45667788887665555543 567899999999865421 111111222
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011511 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
.+.....+|++++|+|+.+
T Consensus 79 ~~~~~~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 79 DYIINEKPDLVVNIVDATA 97 (188)
T ss_dssp HHHHHHCCSEEEEEEEGGG
T ss_pred HHHhccCCCEEEEEecchh
Confidence 2222246899999999764
No 247
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.96 E-value=1.2e-09 Score=96.76 Aligned_cols=96 Identities=23% Similarity=0.310 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+..+|+++|.+|+|||||+|+|++... .....+++|.+.....+. .++..+.+|||||........
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~------------ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVT-VNDKKITFLDTPGHEAFTTMR------------ 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEE-ETTEEEEESCCCSSSSSSCSC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEE-eCCceEEEEECCCCHHHHHHH------------
Confidence 456899999999999999999998753 344456666665544444 356789999999975532111
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
...++.+|++++|+|+..+...+....++.
T Consensus 73 --~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~ 102 (178)
T 2lkc_A 73 --ARGAQVTDIVILVVAADDGVMPQTVEAINH 102 (178)
T ss_dssp --CSSCCCCCEEEEEEETTCCCCHHHHHHHHH
T ss_pred --HHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 123578999999999988777777666543
No 248
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.96 E-value=4.2e-10 Score=104.23 Aligned_cols=54 Identities=13% Similarity=0.127 Sum_probs=39.2
Q ss_pred CCeEEEEecccCCCchh---hhhhHHHH---hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 303 DKFIILAVNKCESPRKG---IMQVSEFW---SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~---~~~~~~~~---~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
+.|.++|+||+|+.... ......+. ..+.+++++||++|.|++++++.+.+.+.
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 57889999999986532 11111121 23557899999999999999999987654
No 249
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.96 E-value=6e-10 Score=120.10 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCc--------------eeccccee----ee--------cCCC----
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGT--------------TRDAIDTE----FT--------GPEG---- 419 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gt--------------t~~~~~~~----~~--------~~~g---- 419 (484)
...+|+++|.+|+|||||+|+|+|..++.++..|+| |++..... +. ...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 356899999999999999999999998888888877 43210000 00 0001
Q ss_pred --------------------------CcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccH
Q 011511 420 --------------------------QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 420 --------------------------~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
.++.||||||+.+.. .....+...++.+|++|+|+|+...++.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-----------~~~~~~~~~i~~aD~vL~Vvda~~~~s~ 216 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-----------ARNELSLGYVNNCHAILFVMRASQPCTL 216 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-----------TCHHHHTHHHHSSSEEEEEEETTSTTCH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-----------hHHHHHHHHHHhCCEEEEEEeCCCccch
Confidence 469999999986521 0123455667899999999999999998
Q ss_pred Hhhhhh
Q 011511 474 QADWRD 479 (484)
Q Consensus 474 ~d~~~~ 479 (484)
.+...+
T Consensus 217 ~e~~~l 222 (695)
T 2j69_A 217 GERRYL 222 (695)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 887654
No 250
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=2.9e-10 Score=114.38 Aligned_cols=90 Identities=24% Similarity=0.255 Sum_probs=47.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec--------------------CC---CCcEEEEEcCC
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG--------------------PE---GQKFRLIDTAG 429 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~--------------------~~---g~~i~liDTPG 429 (484)
+|+++|.+|||||||+|+|++.. +.++..|+||++........ .+ ..++.+|||||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 68999999999999999999987 67788899998766543210 01 24689999999
Q ss_pred CccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
+..... ....+....+..++.+|++++|+|+...
T Consensus 81 ~~~~a~-------~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAH-------EGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchh-------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864210 1111122233457899999999999764
No 251
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.94 E-value=1.3e-09 Score=97.70 Aligned_cols=91 Identities=24% Similarity=0.388 Sum_probs=61.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|.|++.. +.+...+|+|++.....+ ..+.++||||+.....++..+...........
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~-----~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEW-----KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEE-----TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEec-----CCEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 379999999999999999999875 566777888876654333 27899999997654322110001111123334
Q ss_pred HHH-hhcCcEEEEEEeCc
Q 011511 452 FRA-IRRSDVVALVIEAM 468 (484)
Q Consensus 452 ~~~-~~~~d~~l~V~~~~ 468 (484)
++. +..++++++|+|..
T Consensus 76 ~~~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGK 93 (190)
T ss_dssp HHHHGGGCCEEEEEEETT
T ss_pred HHhhhccCCEEEEEEcch
Confidence 444 67788999999975
No 252
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.94 E-value=3.8e-09 Score=105.22 Aligned_cols=110 Identities=25% Similarity=0.278 Sum_probs=67.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCC-----------------------------------------------
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS----------------------------------------------- 403 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~----------------------------------------------- 403 (484)
.++|+++|.+|+|||||+|+|+|...+..+...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 458999999999999999999997643332211
Q ss_pred ------CceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc--cccHHh
Q 011511 404 ------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA--CITEQA 475 (484)
Q Consensus 404 ------gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~--~~~~~d 475 (484)
+...+.+...+....+..+.+|||||+........ ...........+...++.+|++++|+++.. ..+.++
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q-~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQ-SDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTC-CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCC-chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 01111111122223456799999999987532211 123444455666677899999999998632 234444
Q ss_pred hhhhhh
Q 011511 476 DWRDHR 481 (484)
Q Consensus 476 ~~~~~~ 481 (484)
..++++
T Consensus 193 ~~l~~~ 198 (360)
T 3t34_A 193 IKISRE 198 (360)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 253
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=7e-10 Score=110.81 Aligned_cols=94 Identities=26% Similarity=0.309 Sum_probs=70.3
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC----------------CCcEEEEEcCCCcc
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE----------------GQKFRLIDTAGIRK 432 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~----------------g~~i~liDTPG~~~ 432 (484)
..+.+++++|.||+|||||+|+|.|.....++..|+||++.....+...+ +..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 44679999999999999999999998766788999999988766655432 13589999999975
Q ss_pred CccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
.... +... ....+..++.+|++++|+|+.+
T Consensus 98 ~~s~---~e~L----~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GAST---GVGL----GNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCS---SSSS----CHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcH---HHHH----HHHHHHHHHHHHHHHHHHhccc
Confidence 3211 1111 1234556789999999999854
No 254
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.93 E-value=1.9e-09 Score=98.49 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=59.6
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHH-
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL- 446 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~- 446 (484)
..+.+|+++|++|+|||||+|+|+|.. ...+.+.+|+|+......+ ++ .+.++||||+...... .......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~---~~-~~~l~Dt~G~~~~~~~---~~~~~~~~ 96 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV---AD-GKRLVDLPGYGYAEVP---EEMKRKWQ 96 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEE---ET-TEEEEECCCCC---------CCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEe---cC-CEEEEECcCCcccccC---HHHHHHHH
Confidence 445689999999999999999999976 4555777888875322222 22 6889999998542110 0111111
Q ss_pred -HHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 447 -SVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 447 -~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
.+..+++..+.++++++|+|+..+.+..+..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~ 130 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI 130 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH
Confidence 123334445678999999999887776655444
No 255
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.93 E-value=1e-09 Score=106.89 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=68.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|||||||+|.+++.....+...+|+|++.........++..+.+|||||.... ...+.....
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~~~~~~~~~ 74 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF---------MENYFTKQK 74 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH---------HHHHHTTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH---------hhhhhhhHH
Confidence 58999999999999999999987555566678888887666655445678999999997431 111111122
Q ss_pred HHHhhcCcEEEEEEeCcccccHHh
Q 011511 452 FRAIRRSDVVALVIEAMACITEQA 475 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~~~~~d 475 (484)
...++.+|++++|+|+.++-+-++
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~ 98 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKD 98 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHH
T ss_pred HHHhccCCEEEEEEECCChhhHHH
Confidence 345689999999999987654444
No 256
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.90 E-value=2.3e-09 Score=112.32 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcce--eecCCCCceecccceeeec---------------------CCC-------
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--IVSPISGTTRDAIDTEFTG---------------------PEG------- 419 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~--~~~~~~gtt~~~~~~~~~~---------------------~~g------- 419 (484)
...+|+++|.+|+|||||+|+|+|.... .++..++|++......... ..|
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3468999999999999999999998765 4677777654211000000 000
Q ss_pred ----------CcEEEEEcCCCccCccccCCCCchhHH-HHHHHHHHhhcCcEEEEEEeCcc-cccHHhhhhhhhc
Q 011511 420 ----------QKFRLIDTAGIRKRAAIASSGSTTEAL-SVNRAFRAIRRSDVVALVIEAMA-CITEQADWRDHRW 482 (484)
Q Consensus 420 ----------~~i~liDTPG~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~l~V~~~~~-~~~~~d~~~~~~~ 482 (484)
.++.+|||||+....... ....+ ....+...++.+|++++|+|+.. .+++++..+++++
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~----~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l 214 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQR----VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGAL 214 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-----------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHT
T ss_pred eEEeccccccCCEEEEECcCCCCcchhH----HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHH
Confidence 368999999997532100 00000 11233455789999999999987 4788888777654
No 257
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.89 E-value=1.3e-09 Score=107.43 Aligned_cols=91 Identities=23% Similarity=0.304 Sum_probs=67.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
...|+++|.+|||||||+|+|.+.. ..+...+.+|.+.....+...++..+.|+||||+.+.... ...+...
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~-~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~-------~~~l~~~ 229 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK-PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQ-------GVGLGHQ 229 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC-CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTC-------TTTTHHH
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC-CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccc-------cchhHHH
Confidence 3479999999999999999999865 4567778888877666666545588999999998542110 0111233
Q ss_pred HHHHhhcCcEEEEEEeCcc
Q 011511 451 AFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~ 469 (484)
.++.++.+|++++|+|+..
T Consensus 230 fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 230 FLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp HHHHHHHCCEEEEEEESSC
T ss_pred HHHHHHhccEEEEEEECCc
Confidence 4566788999999999964
No 258
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.89 E-value=1.4e-09 Score=108.05 Aligned_cols=90 Identities=29% Similarity=0.347 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC--------------------CCCcEEEEEcCCCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--------------------EGQKFRLIDTAGIR 431 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~--------------------~g~~i~liDTPG~~ 431 (484)
.+|+++|.||+|||||+|+|.+.. +.+...|++|........... .+..+.++||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 368999999999999999999874 456667777766544333221 23569999999997
Q ss_pred cCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
..... +... ....+..++.+|++++|+|+.+
T Consensus 81 ~~a~~---~~~l----g~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 81 KGAHK---GEGL----GNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCS---SSCT----THHHHHHHHTCSEEEEEEECCC
T ss_pred ccccc---cchH----HHHHHHHHHhCCEEEEEEECCC
Confidence 54211 1111 1334556899999999999875
No 259
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.89 E-value=3.2e-09 Score=106.08 Aligned_cols=91 Identities=19% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCC-----------------ceeeEeecccccccc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGE-----------------HEFMLVDTGGVLNVS 225 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDtpG~~~~~ 225 (484)
..+|+|+|++|||||||+|+|+|...+.++++|++|.....+.+.+.+ ..+.++||||+....
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~ 99 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 99 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCC
Confidence 579999999999999999999997755788899999999999888876 357999999987544
Q ss_pred CCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC
Q 011511 226 KSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA 284 (484)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~ 284 (484)
...+.+. ..+...+..+|.+++|+|+..
T Consensus 100 s~~e~L~-------------------------------~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 100 STGVGLG-------------------------------NAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CSSSSSC-------------------------------HHHHHHHTTCSEEEEEEECCC
T ss_pred cHHHHHH-------------------------------HHHHHHHHHHHHHHHHHhccc
Confidence 3322221 345567788999999999754
No 260
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.87 E-value=2.5e-09 Score=93.94 Aligned_cols=90 Identities=21% Similarity=0.180 Sum_probs=61.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|.+.......+..|.+.. .+. .++..+.+|||||...... .
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~~~Dt~G~~~~~~------~-------- 67 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE----TVT-YKNLKFQVWDLGGLTSIRP------Y-------- 67 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE----EEE-ETTEEEEEEEECCCGGGGG------G--------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE----EEE-ECCEEEEEEECCCChhhhH------H--------
Confidence 45899999999999999999998765433333343322 222 2467899999999754211 0
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMAC--ITEQADWRD 479 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~~~ 479 (484)
....++.+|++++|+|+..+ |..-+.++.
T Consensus 68 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~ 98 (171)
T 1upt_A 68 WRCYYSNTDAVIYVVDSCDRDRIGISKSELV 98 (171)
T ss_dssp GGGGCTTCSEEEEEEETTCCTTHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHH
Confidence 11245789999999999875 555555443
No 261
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=1.2e-08 Score=102.46 Aligned_cols=153 Identities=16% Similarity=0.146 Sum_probs=79.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce---eeecCCCceeeeeEEEEEeCC--ceeeEeeccccccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRA---IVVDEPGVTRDRMYGRSFWGE--HEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~---~~~~~~~~t~~~~~~~~~~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
.++++|+|++|+|||||+|.|+|.... .....++.+...........+ ..++++|++|+...... .....
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~-~~~~~---- 116 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK-EDSYK---- 116 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH-HHHSH----
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcccc-chhhh----
Confidence 345999999999999999999987421 111123333322221112122 25799999998642110 00000
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHHH---------hhhc--C-eEEEEeeCCCCCCcccHHHHHHHHhhcCCCe
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATAA---------IEES--C-VIIFLVDGQAGLTAADEEIADWLRKNYMDKF 305 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~---------~~~~--d-~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p 305 (484)
.+...+ ...+...+... ...+ | ++++|+|+.+++...+.++++.|. .+.|
T Consensus 117 ------------~i~~~i---~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~---~~~~ 178 (427)
T 2qag_B 117 ------------PIVEFI---DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD---SKVN 178 (427)
T ss_dssp ------------HHHHHH---HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC---SCSE
T ss_pred ------------HHHHHH---HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh---hCCC
Confidence 000111 11111111111 0112 2 477788888888888877777665 3889
Q ss_pred EEEEecccCCCchhhhhh-----HH-HHhcCCCceeeec
Q 011511 306 IILAVNKCESPRKGIMQV-----SE-FWSLGFSPLPISA 338 (484)
Q Consensus 306 ~ilV~NK~Dl~~~~~~~~-----~~-~~~~~~~~i~vSa 338 (484)
+++|+||+|......... .. +...+++++.+|.
T Consensus 179 vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 179 IIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred EEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 999999999876433221 11 2334667777774
No 262
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.85 E-value=3.1e-09 Score=105.00 Aligned_cols=117 Identities=18% Similarity=0.124 Sum_probs=77.5
Q ss_pred eEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEee
Q 011511 202 MYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVD 281 (484)
Q Consensus 202 ~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD 281 (484)
....+.+++..+.+|||+|....+..+. .++.+++++|+|+|
T Consensus 184 ~~~~~~~~~~~l~iwDt~GQe~~r~~w~--------------------------------------~yf~~a~~iIfV~d 225 (353)
T 1cip_A 184 VETHFTFKDLHFKMFDVGGQRSERKKWI--------------------------------------HCFEGVTAIIFCVA 225 (353)
T ss_dssp EEEEEEETTEEEEEEEECCSGGGGGGGG--------------------------------------GGCTTCSEEEEEEE
T ss_pred EEEEEeeCCeeEEEEeCCCchhhhHHHH--------------------------------------HHHhcCCEEEEEEE
Confidence 3445666778899999999877655443 34578899999999
Q ss_pred CCCCCC--------cccHHHHHHHHh-----hcCCCeEEEEecccCCCchhh------------------hhhHHHH---
Q 011511 282 GQAGLT--------AADEEIADWLRK-----NYMDKFIILAVNKCESPRKGI------------------MQVSEFW--- 327 (484)
Q Consensus 282 ~~~~~~--------~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~~~------------------~~~~~~~--- 327 (484)
.+.... ..-.+...++.. .+.+.|++||+||+|+..... .....+.
T Consensus 226 ls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~ 305 (353)
T 1cip_A 226 LSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQ 305 (353)
T ss_dssp GGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHH
T ss_pred CccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHH
Confidence 876321 111222333322 235789999999999853221 1112222
Q ss_pred ---------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 328 ---------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 328 ---------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..++.++++||+++.|+.+++..+.+.+.
T Consensus 306 f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 306 FEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp HHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 13446789999999999999999887664
No 263
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.85 E-value=3.5e-09 Score=95.26 Aligned_cols=105 Identities=18% Similarity=0.202 Sum_probs=60.7
Q ss_pred CCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEEEcCCCCCchhHHHhhhcCcceee--cCCCCceecccceeeecCC
Q 011511 341 GTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPE 418 (484)
Q Consensus 341 g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~--~~~~gtt~~~~~~~~~~~~ 418 (484)
...+..+.+.+.+.+..... .......+|+++|.+|+|||||+|.|.+.....+ ...++++.+. .
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~-----~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~--------~ 89 (193)
T 2ged_A 23 KRKISQWREWIDEKLGGGSG-----GGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------D 89 (193)
T ss_dssp TTBCHHHHHHHHHHC-------------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC--------C
T ss_pred HHHHHHHHHHHHHHHHhhcC-----CCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee--------c
Confidence 34556666666655443221 1123456999999999999999999998753221 2223333321 4
Q ss_pred CCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCc
Q 011511 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
+..+.+|||||..... .... .......+.+|++++|+|+.
T Consensus 90 ~~~~~l~Dt~G~~~~~------~~~~----~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 90 GSGVTLVDFPGHVKLR------YKLS----DYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CTTCSEEEETTCCBSS------CCHH----HHHHHHGGGEEEEEEEEETT
T ss_pred CCeEEEEECCCCchHH------HHHH----HHHHhhcccCCEEEEEEECC
Confidence 5678999999986432 1111 11223346699999999987
No 264
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.85 E-value=5.2e-09 Score=93.37 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|||||||+|.|.+.....+.+..|.+...+ . .++..+.++||||.... . ..
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~----~-~~~~~l~i~Dt~G~~~~----------~----~~ 76 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV----Q-SQGFKLNVWDIGGQRKI----------R----PY 76 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEE----E-ETTEEEEEEECSSCGGG----------H----HH
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEE----E-ECCEEEEEEECCCCHHH----------H----HH
Confidence 4689999999999999999999986655566666554322 2 24678899999997431 1 11
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~ 96 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADR 96 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCG
T ss_pred HHHHhCCCCEEEEEEECcCH
Confidence 23456899999999998764
No 265
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.85 E-value=5.7e-09 Score=93.48 Aligned_cols=89 Identities=20% Similarity=0.274 Sum_probs=60.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|++.......+..|.+.. .+. .++..+.+|||||...... .
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~Dt~G~~~~~~-------~------- 76 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIV-INNTRFLMWDIGGQESLRS-------S------- 76 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCE----EEE-ETTEEEEEEECCC----CG-------G-------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceE----EEE-ECCEEEEEEECCCCHhHHH-------H-------
Confidence 46899999999999999999997765555554453332 222 2567899999999854211 1
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
....++.+|++++|+|+.++ |..-..++
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 106 (187)
T 1zj6_A 77 WNTYYTNTEFVIVVVDSTDRERISVTREEL 106 (187)
T ss_dssp GHHHHTTCCEEEEEEETTCTTTHHHHHHHH
T ss_pred HHHHhcCCCEEEEEEeCCCHHHHHHHHHHH
Confidence 11346789999999999875 44444443
No 266
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.84 E-value=7.8e-09 Score=90.11 Aligned_cols=87 Identities=18% Similarity=0.154 Sum_probs=58.2
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|++++...... .| |.......+. ..+..+.+|||||.... . ....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~-~~~~~~~i~Dt~G~~~~----------~----~~~~ 62 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT--IP--TIGFNVETVE-YKNISFTVWDVGGQDKI----------R----PLWR 62 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC--CC--CSSCCEEEEE-CSSCEEEEEECCCCGGG----------H----HHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc--cC--cCceeEEEEE-ECCEEEEEEEcCCChhh----------H----HHHH
Confidence 689999999999999999998654322 22 2222222233 35678999999997421 1 1122
Q ss_pred HHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 453 RAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
..++.+|++++|+|+.++ |..-..++
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~ 90 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERVNEAREEL 90 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGHHHHHHHH
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 357899999999999765 44444443
No 267
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.83 E-value=5.1e-09 Score=106.95 Aligned_cols=88 Identities=20% Similarity=0.262 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeec------------------------------CCCCceecccceeeecCCC
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEG 419 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~g 419 (484)
...+|+++|.+|+|||||+|+|++....... ..+|+|++.....+. .++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~-~~~ 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE-TEK 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe-cCC
Confidence 3468999999999999999999764321111 125788887666655 467
Q ss_pred CcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccccc
Q 011511 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 420 ~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
..+.+|||||..+. ...+...++.+|++++|+|+..+..
T Consensus 95 ~~~~iiDTPGh~~f--------------~~~~~~~~~~aD~~ilVVDa~~g~~ 133 (439)
T 3j2k_7 95 KHFTILDAPGHKSF--------------VPNMIGGASQADLAVLVISARKGEF 133 (439)
T ss_pred eEEEEEECCChHHH--------------HHHHHhhHhhCCEEEEEEECCCCcc
Confidence 79999999997432 3445556789999999999988654
No 268
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.83 E-value=4e-09 Score=93.96 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=63.1
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+..+|+++|.+|+|||||+|+|++.......+..|.+.. .+. .++..+.+|||||...... ..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~Dt~G~~~~~~------~~------ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVE----EIV-INNTRFLMWDIGGQESLRS------SW------ 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCE----EEE-ETTEEEEEEEESSSGGGTC------GG------
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeE----EEE-ECCEEEEEEECCCCHhHHH------HH------
Confidence 345899999999999999999999876555666665432 222 2567899999999854321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
...++.+|++++|+|+.++ |..-..++
T Consensus 83 --~~~~~~~d~ii~v~D~~~~~s~~~~~~~~ 111 (181)
T 2h17_A 83 --NTYYTNTEFVIVVVDSTDRERISVTREEL 111 (181)
T ss_dssp --GGGGTTCCEEEEEEETTCTTTHHHHHHHH
T ss_pred --HHHhccCCEEEEEEECCCHHHHHHHHHHH
Confidence 1346789999999999875 44433333
No 269
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.82 E-value=8e-09 Score=106.46 Aligned_cols=156 Identities=20% Similarity=0.241 Sum_probs=90.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHh------CCcceeeecCCCce-----------e--eeeEEE----------------E
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT-----------R--DRMYGR----------------S 206 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t-----------~--~~~~~~----------------~ 206 (484)
....|+++|.+||||||++++|. |.+...+...+... . -..... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998 76654444321100 0 000000 0
Q ss_pred EeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCC
Q 011511 207 FWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGL 286 (484)
Q Consensus 207 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~ 286 (484)
.+.+..+.+|||||.... ...+... +.. +.. +..+|.+++|+|+..+.
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~e---------------------------l~~-~~~-~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEE---------------------------MLQ-VAN-AIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHH---------------------------HHH-HHH-HHCCSEEEEEEETTCCT
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHH---------------------------HHH-HHh-hhcCceEEEEEeccccc
Confidence 115678999999998641 1111111 111 111 23789999999987754
Q ss_pred CcccHHHHHHHHhhcCCCeE-EEEecccCCCchhhhhhHHHHhcCC------------------CceeeecccCCC-Cch
Q 011511 287 TAADEEIADWLRKNYMDKFI-ILAVNKCESPRKGIMQVSEFWSLGF------------------SPLPISAISGTG-TGE 346 (484)
Q Consensus 287 ~~~~~~~~~~l~~~~~~~p~-ilV~NK~Dl~~~~~~~~~~~~~~~~------------------~~i~vSa~~g~g-i~~ 346 (484)
. .......+.+ ..|+ .+|+||+|...............+. +.+++|+..|.| +..
T Consensus 228 ~--~~~~a~~~~~---~~~i~gvVlNK~D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~ 302 (504)
T 2j37_W 228 A--CEAQAKAFKD---KVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEG 302 (504)
T ss_dssp T--HHHHHHHHHH---HHCCCCEEEECTTSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTT
T ss_pred c--HHHHHHHHHh---hcCceEEEEeCCccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHH
Confidence 3 2233333333 2564 8899999987532111101111111 235679999999 999
Q ss_pred hhHHHHHH
Q 011511 347 LLDLVCSE 354 (484)
Q Consensus 347 L~~~i~~~ 354 (484)
|++++.+.
T Consensus 303 Lie~i~e~ 310 (504)
T 2j37_W 303 LIDKVNEL 310 (504)
T ss_dssp THHHHTTT
T ss_pred HHHHHHHH
Confidence 99998765
No 270
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.82 E-value=1.1e-08 Score=93.61 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC--CCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~--g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++..... ..+.++.+... +...+ +..+.+|||||.... ...+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~----------~~~~- 71 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQYRD--TQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESL----------RFQL- 71 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCCCC--BCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHH----------HHHH-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCccc--ccCCcceeeEE--EEecCCCccEEEEEECCCChhH----------HHHH-
Confidence 4689999999999999999999875322 22333322222 22221 467999999997421 1101
Q ss_pred HHHHHHhhcCcEEEEEEeCcc
Q 011511 449 NRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~ 469 (484)
....++.+|++++|+|+..
T Consensus 72 --~~~~~~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 72 --LDRFKSSARAVVFVVDSAA 90 (214)
T ss_dssp --HHHHGGGEEEEEEEEETTT
T ss_pred --HHHHHhhCCEEEEEEECCC
Confidence 1223789999999999865
No 271
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.82 E-value=1.1e-08 Score=92.53 Aligned_cols=99 Identities=18% Similarity=0.137 Sum_probs=60.1
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
...+|+++|.+|||||||+|.+.+..........+.+.......+.......+.+|||||...... ....
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~---- 88 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFD------PTFD---- 88 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTC------TTCC----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHh------hhhh----
Confidence 346899999999999999999998533221111122222222222112346789999999754211 1100
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
....++.+|++++|+|+.+++.+....+.
T Consensus 89 -~~~~~~~~~~~i~v~d~~~~~~~~~~~~~ 117 (196)
T 3llu_A 89 -YEMIFRGTGALIYVIDAQDDYMEALTRLH 117 (196)
T ss_dssp -HHHHHHTCSEEEEEEETTSCCHHHHHHHH
T ss_pred -cccccccCCEEEEEEECCCchHHHHHHHH
Confidence 02346789999999999987555444443
No 272
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.81 E-value=6.6e-09 Score=93.76 Aligned_cols=90 Identities=17% Similarity=0.225 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceee--cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~--~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|||||||+|.|++.....+ .+..|.+... +. ..+..+.+|||||....... .
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~----~~-~~~~~~~i~Dt~G~~~~~~~------~----- 80 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FE-KGRVAFTVFDMGGAKKFRGL------W----- 80 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE----EE-ETTEEEEEEEECCSGGGGGG------G-----
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE----EE-eCCEEEEEEECCCCHhHHHH------H-----
Confidence 45899999999999999999999876554 4444544332 22 35678999999998543211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc--ccHHhhhhh
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC--ITEQADWRD 479 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~--~~~~d~~~~ 479 (484)
...++.+|++++|+|+.++ |..-+.++.
T Consensus 81 ---~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~ 110 (199)
T 4bas_A 81 ---ETYYDNIDAVIFVVDSSDHLRLCVVKSEIQ 110 (199)
T ss_dssp ---GGGCTTCSEEEEEEETTCGGGHHHHHHHHH
T ss_pred ---HHHHhcCCEEEEEEECCcHHHHHHHHHHHH
Confidence 1236799999999999875 444444443
No 273
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.81 E-value=5e-09 Score=93.65 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|++++.......+..|.+.. .+. .++..+.++||||...... .
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~~~Dt~G~~~~~~--------------~ 78 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIK----TLE-HRGFKLNIWDVGGQKSLRS--------------Y 78 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEE----EEE-ETTEEEEEEEECCSHHHHT--------------T
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceE----EEE-ECCEEEEEEECCCCHhHHH--------------H
Confidence 46899999999999999999998763333333343332 222 2567899999999743210 0
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~ 98 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADR 98 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCG
T ss_pred HHHHhcCCCEEEEEEECcCH
Confidence 11346789999999998765
No 274
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.80 E-value=5.4e-09 Score=91.58 Aligned_cols=86 Identities=27% Similarity=0.313 Sum_probs=58.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcce-eecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~-~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|+|++.... ...+..|++......... ..+..+.+|||||...... .
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~--------------~ 71 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-NELHKFLIWDTAGLERFRA--------------L 71 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGG--------------G
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-CeEEEEEEEcCCCchhhhc--------------c
Confidence 58999999999999999999987632 234455655544333322 1235688999999843210 0
Q ss_pred HHHHhhcCcEEEEEEeCccccc
Q 011511 451 AFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
....++.+|++++|+|+..+-+
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s 93 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEET 93 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHH
T ss_pred cHhhCcCCCEEEEEEECcCHHH
Confidence 1234678999999999877543
No 275
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.78 E-value=6e-09 Score=110.53 Aligned_cols=85 Identities=20% Similarity=0.359 Sum_probs=64.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec------------------------------CCCCceecccceeeecCCCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~g~ 420 (484)
..+|+++|.+|+|||||+|+|++....... ..+|+|++.....+.. .+.
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~~ 245 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HRA 245 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SSC
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CCc
Confidence 468999999999999999999976332111 0258888887777664 678
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
++.+|||||..+. ...+...++.+|++|+|+|+..+
T Consensus 246 ~~~iiDTPG~e~f--------------~~~~~~~~~~aD~~llVVDa~~g 281 (611)
T 3izq_1 246 NFTIVDAPGHRDF--------------VPNAIMGISQADMAILCVDCSTN 281 (611)
T ss_dssp EEEEEECCSSSCH--------------HHHHTTTSSCCSEEEEEEECSHH
T ss_pred eEEEEECCCCccc--------------HHHHHHHHhhcCceEEEEECCCC
Confidence 9999999998532 23445567899999999999764
No 276
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.78 E-value=9e-09 Score=106.57 Aligned_cols=85 Identities=21% Similarity=0.354 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcc------------------------------eeecCCCCceecccceeeecCCCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDR------------------------------TIVSPISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~------------------------------~~~~~~~gtt~~~~~~~~~~~~g~ 420 (484)
..+|+++|.+|+|||||+|+|++... .......|+|.+.....+. ..+.
T Consensus 33 ~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS-THRA 111 (483)
T ss_dssp EEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEE-CSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEe-cCCc
Confidence 35899999999999999999986511 1112335888887776665 3678
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.+.+|||||..+. ...+...++.+|++++|+|+..+
T Consensus 112 ~~~iiDTPG~~~f--------------~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRDF--------------VPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGGG--------------HHHHHHHHTTCSEEEEEEECCC-
T ss_pred eEEEEECCCcHHH--------------HHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999998532 23455678899999999999875
No 277
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.77 E-value=1.9e-08 Score=92.30 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceee--cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIV--SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~--~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
...+|+++|.+|+|||||+|+|++.....+ ...++++.+. .+..+.++||||..... ...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~----------~~~ 72 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLR----------YKL 72 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGT----------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHH----------HHH
Confidence 356899999999999999999998753322 1222222221 34578999999985321 111
Q ss_pred HHHHHHHhhcCcEEEEEEeCc---ccccHHhhhhhh
Q 011511 448 VNRAFRAIRRSDVVALVIEAM---ACITEQADWRDH 480 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~---~~~~~~d~~~~~ 480 (484)
...+......+|++++|+|+. ..|+.-..++.+
T Consensus 73 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~ 108 (218)
T 1nrj_B 73 SDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 108 (218)
T ss_dssp HHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHH
T ss_pred HHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHH
Confidence 111112234589999999998 567666666543
No 278
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.77 E-value=1.2e-08 Score=91.37 Aligned_cols=89 Identities=19% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|+|.+.......+..|.+.. .+. .++..+.+|||||....... ..
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~~~Dt~G~~~~~~~------~~------ 84 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLE----TLQ-YKNISFEVWDLGGQTGVRPY------WR------ 84 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEE----EEE-ETTEEEEEEEECCSSSSCCC------CS------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEE----EEE-ECCEEEEEEECCCCHhHHHH------HH------
Confidence 46899999999999999999988765544444343322 222 24678999999997543211 10
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
..++.+|++++|+|+.++ |..-..++
T Consensus 85 --~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 112 (189)
T 2x77_A 85 --CYFSDTDAVIYVVDSTDRDRMGVAKHEL 112 (189)
T ss_dssp --SSSTTCCEEEEEEETTCCTTHHHHHHHH
T ss_pred --HHhhcCCEEEEEEeCCCHHHHHHHHHHH
Confidence 135689999999999865 44444443
No 279
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.77 E-value=1.1e-08 Score=91.72 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=60.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|++...+..... .|.......+. .++..+.+|||||.......
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-------------- 83 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--PTIGFSIEKFK-SSSLSFTVFDMSGQGRYRNL-------------- 83 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--CCSSEEEEEEE-CSSCEEEEEEECCSTTTGGG--------------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--CccceeEEEEE-ECCEEEEEEECCCCHHHHHH--------------
Confidence 45899999999999999999999863332222 22222222233 35688999999997543211
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
....++.+|++++|+|+.++ |..-..++
T Consensus 84 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~ 113 (190)
T 2h57_A 84 WEHYYKEGQAIIFVIDSSDRLRMVVAKEEL 113 (190)
T ss_dssp GGGGGGGCSEEEEEEETTCHHHHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHH
Confidence 11346889999999999865 44433433
No 280
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.77 E-value=2.7e-09 Score=110.76 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+.++|+++|++|+|||||+|+|.+.... ....+|+|++.....+...++..+.+|||||...+....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~------------ 69 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMR------------ 69 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSB------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHH------------
Confidence 3468999999999999999999987643 346778998887777665567889999999975543211
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.+.++.+|++++|+|+..+...+....++.
T Consensus 70 --~~~~~~aD~vILVVDa~dg~~~qt~e~l~~ 99 (537)
T 3izy_P 70 --ARGTQVTDIVILVVAADDGVMKQTVESIQH 99 (537)
T ss_dssp --BSSSBSBSSCEEECBSSSCCCHHHHHHHHH
T ss_pred --HHHHccCCEEEEEEECCCCccHHHHHHHHH
Confidence 123578999999999999888888776643
No 281
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=9.1e-09 Score=91.16 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.........++++.+.....+.. ++. .+.+|||||.....
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-------------- 74 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFR-------------- 74 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHH--------------
Confidence 3589999999999999999999876543333444444332222222 332 68899999964321
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
......++.+|++++|+|+..+.+
T Consensus 75 ~~~~~~~~~~d~ii~v~d~~~~~s 98 (180)
T 2g6b_A 75 SVTHAYYRDAHALLLLYDVTNKAS 98 (180)
T ss_dssp ----CCGGGCSEEEEEEETTCHHH
T ss_pred HHHHHHccCCCEEEEEEECCCHHH
Confidence 012234678999999999876533
No 282
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.75 E-value=3.5e-08 Score=93.97 Aligned_cols=133 Identities=18% Similarity=0.210 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeee-------cCCCceeeeeEEEE-EeC--CceeeEeeccccccccCCCchhhh
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVV-------DEPGVTRDRMYGRS-FWG--EHEFMLVDTGGVLNVSKSQPNIME 233 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~-------~~~~~t~~~~~~~~-~~~--~~~i~liDtpG~~~~~~~~~~~~~ 233 (484)
++|+|+|++|+|||||+|.|+|......+ +.+........+.+ ... ...++++|++|+........ ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~-~~- 80 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNEN-CW- 80 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTT-CS-
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHH-HH-
Confidence 57999999999999999999986422211 11111111111111 001 12579999999864322110 00
Q ss_pred hhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHH----------HhhhcCeEEEEeeCC-CCCCcccHHHHHHHHhhcC
Q 011511 234 DLAITTTIGMEGIPLATREAAVARMPSMIERQATA----------AIEESCVIIFLVDGQ-AGLTAADEEIADWLRKNYM 302 (484)
Q Consensus 234 ~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~----------~~~~~d~vilVvD~~-~~~~~~~~~~~~~l~~~~~ 302 (484)
..+...+. ..+...... .+..+++.++++|.. +++...+..++..+..
T Consensus 81 ---------------~~i~~~~~---~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~--- 139 (270)
T 3sop_A 81 ---------------EPIEKYIN---EQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSK--- 139 (270)
T ss_dssp ---------------HHHHHHHH---HHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHT---
T ss_pred ---------------HHHHHHHH---HHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHh---
Confidence 00111111 111111111 123357888999853 6777777777777765
Q ss_pred CCeEEEEecccCCCchh
Q 011511 303 DKFIILAVNKCESPRKG 319 (484)
Q Consensus 303 ~~p~ilV~NK~Dl~~~~ 319 (484)
..++++|+||+|.....
T Consensus 140 ~~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 140 VVNIIPVIAKADTMTLE 156 (270)
T ss_dssp TSEEEEEETTGGGSCHH
T ss_pred cCcEEEEEeccccCCHH
Confidence 48999999999988654
No 283
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.75 E-value=8.4e-09 Score=91.73 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=56.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
...+|+++|.+|+|||||+|++++.......+..|.+.. .+. .++..+.++||||...... ..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~----~~~-~~~~~~~i~Dt~G~~~~~~------~~------ 79 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVE----TLS-YKNLKLNVWDLGGQTSIRP------YW------ 79 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEE----EEE-ETTEEEEEEEEC----CCT------TG------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceE----EEE-ECCEEEEEEECCCCHhHHH------HH------
Confidence 346899999999999999999998766555555554432 222 2467889999999854321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 80 --~~~~~~~d~ii~v~d~~~~ 98 (183)
T 1moz_A 80 --RCYYADTAAVIFVVDSTDK 98 (183)
T ss_dssp --GGTTTTEEEEEEEEETTCT
T ss_pred --HHHhccCCEEEEEEECCCH
Confidence 1235789999999998765
No 284
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.75 E-value=1.6e-08 Score=88.42 Aligned_cols=84 Identities=21% Similarity=0.214 Sum_probs=55.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|+|++...... .+..|++.......+. ..+..+.++||||..... ..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~----------~~---- 71 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-DTTVKFEIWDTAGQERYH----------SL---- 71 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGG----------GG----
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHhh----------hh----
Confidence 5899999999999999999998653322 2333444433222221 124568999999964321 11
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~ 91 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNE 91 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCH
T ss_pred hHHhccCCCEEEEEEECCCH
Confidence 22356889999999998765
No 285
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.75 E-value=1.6e-08 Score=91.13 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=53.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.+++.......+..|.. ...+. ..+..+.+|||||..... . .
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~-~~~~~~~i~Dt~G~~~~~------~-~------- 89 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN----VETVE-YKNICFTVWDVGGQDKIR------P-L------- 89 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE----EEEEE-ETTEEEEEEECC-----C------T-T-------
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee----EEEEE-ECCEEEEEEECCCCHhHH------H-H-------
Confidence 468999999999999999999987654333322322 11222 256789999999974321 0 0
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 90 ~~~~~~~~d~iilv~D~~~~ 109 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDR 109 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCG
T ss_pred HHHHhccCCEEEEEEECCCH
Confidence 12346799999999999765
No 286
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=1.1e-08 Score=91.98 Aligned_cols=86 Identities=27% Similarity=0.266 Sum_probs=59.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-eecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++.... ...+..|++.......+. ..+..+.+|||||...... .
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~----------~--- 88 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-NELHKFLIWDTAGQERFHS----------L--- 88 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-SSEEEEEEEEECCSGGGGG----------G---
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-CEEEEEEEEcCCCchhhHh----------h---
Confidence 358999999999999999999987632 345556766554333322 1345789999999643211 0
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+-
T Consensus 89 -~~~~~~~~d~iilV~d~~~~~ 109 (192)
T 2fg5_A 89 -APMYYRGSAAAVIVYDITKQD 109 (192)
T ss_dssp -THHHHTTCSEEEEEEETTCTH
T ss_pred -hHHhhccCCEEEEEEeCCCHH
Confidence 123467899999999987643
No 287
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.74 E-value=9.8e-09 Score=89.68 Aligned_cols=83 Identities=17% Similarity=0.150 Sum_probs=45.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|+|||||+|.+.+.....+.+.+|++.... ... ......+.++||||...... ..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~i~D~~g~~~~~~--------------~~ 66 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRS-IVV-DGEEASLMVYDIWEQDGGRW--------------LP 66 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEEE-EEE-TTEEEEEEEEECC-----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEE-EEE-CCEEEEEEEEECCCCccchh--------------hh
Confidence 479999999999999999999987766777778776421 111 12234578999999743211 01
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011511 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 67 ~~~~~~~~~~i~v~d~~~~ 85 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDK 85 (166)
T ss_dssp ------CCEEEEEEETTCH
T ss_pred hhhhhhCCEEEEEEECCCH
Confidence 1235789999999998764
No 288
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.74 E-value=1.1e-08 Score=90.53 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=56.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++.... ....++.+.+.....+.. ++ ..+.++||||....... ..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------~~---- 76 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI------TS---- 76 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC------CG----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh------HH----
Confidence 358999999999999999999987543 344455554443333332 34 46889999996543211 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
..++.+|++++|+|+.++-
T Consensus 77 ----~~~~~~d~~i~v~d~~~~~ 95 (181)
T 3tw8_B 77 ----TYYRGTHGVIVVYDVTSAE 95 (181)
T ss_dssp ----GGGTTCSEEEEEEETTCHH
T ss_pred ----HHhccCCEEEEEEECCCHH
Confidence 2367899999999987643
No 289
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.74 E-value=2.4e-08 Score=90.16 Aligned_cols=87 Identities=22% Similarity=0.153 Sum_probs=55.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC-------------------------------
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG------------------------------- 419 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g------------------------------- 419 (484)
..+|+++|.+|+|||||+|+|++.... ....+.+..+.....+.. ++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFH-ENTNTTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSCEEEEEEEET-TC-------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCC-CCcCccccceeEEEEEEe-cCccccccccccccccccccccccccccccccc
Confidence 458999999999999999999997532 222222211111111221 11
Q ss_pred --------CcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccH
Q 011511 420 --------QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 420 --------~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~ 473 (484)
..+.+|||||..... . .....++.+|++++|+|+..+.+-
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~------~--------~~~~~~~~~d~~i~v~D~~~~~s~ 132 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYA------S--------IVPLYYRGATCAIVVFDISNSNTL 132 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCT------T--------THHHHHTTCSEEEEEEETTCHHHH
T ss_pred cccCccceeEEEEEECCCcHHHH------H--------HHHHHhcCCCEEEEEEECCCHHHH
Confidence 568999999964321 1 122446899999999999876443
No 290
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.74 E-value=9.1e-09 Score=93.29 Aligned_cols=80 Identities=18% Similarity=0.243 Sum_probs=51.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRA 451 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~ 451 (484)
.+|+++|.+|||||||+|.+.+.......+..|.+. ..+. .++..+.++||||...... ..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~----~~~~-~~~~~l~i~Dt~G~~~~~~------~~-------- 86 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTS----EELT-IAGMTFTTFDLGGHIQARR------VW-------- 86 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC------CCCCCSC----EEEE-ETTEEEEEEEECC----CC------GG--------
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCcee----EEEE-ECCEEEEEEECCCcHhhHH------HH--------
Confidence 489999999999999999999876544444444432 2232 3457899999999754321 11
Q ss_pred HHHhhcCcEEEEEEeCccc
Q 011511 452 FRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 452 ~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 87 ~~~~~~~d~~i~v~D~~~~ 105 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADH 105 (198)
T ss_dssp GGGGGGCSEEEEEEETTCG
T ss_pred HHHHhcCCEEEEEEECCCH
Confidence 1236789999999998764
No 291
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.74 E-value=8.3e-09 Score=90.91 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=52.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.|.+.....+.+.+|++.......+ ++. .+.++||||.... ....+
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~----------~~~~~- 70 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV---DGEDTTLVVVDTWEAEKL----------DKSWS- 70 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEE---TTEEEEEEEECCC-----------------CHH-
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEE---CCEEEEEEEEecCCCCcc----------chhhh-
Confidence 5899999999999999999999876666666776654332222 332 6789999997431 00111
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~ 90 (175)
T 2nzj_A 71 -QESCLQGGSAYVIVYSIADR 90 (175)
T ss_dssp -HHHTTTSCSEEEEEEETTCH
T ss_pred -HHhhcccCCEEEEEEECCCH
Confidence 12346789999999998763
No 292
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.74 E-value=1.2e-08 Score=91.77 Aligned_cols=81 Identities=17% Similarity=0.219 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.+.+.......+..+.+. ..+. .++..+.++||||...... ..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~----~~~~-~~~~~~~i~Dt~G~~~~~~------~~------- 84 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTS----EELA-IGNIKFTTFDLGGHIQARR------LW------- 84 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEE----EEEE-ETTEEEEEEECCCSGGGTT------SG-------
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCe----EEEE-ECCEEEEEEECCCCHHHHH------HH-------
Confidence 3589999999999999999999876544444444443 2232 3567899999999854321 01
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 85 -~~~~~~~d~~i~v~d~~~~ 103 (190)
T 1m2o_B 85 -KDYFPEVNGIVFLVDAADP 103 (190)
T ss_dssp -GGGCTTCCEEEEEEETTCG
T ss_pred -HHHHhcCCEEEEEEECCCh
Confidence 1235789999999999875
No 293
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.73 E-value=2.4e-08 Score=89.43 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceeccc-ceeeecCCC-----------CcEEEEEcCCCccCccccC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAI-DTEFTGPEG-----------QKFRLIDTAGIRKRAAIAS 438 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~-~~~~~~~~g-----------~~i~liDTPG~~~~~~~~~ 438 (484)
..+|+++|.+|+|||||+|.|++..... ...+..+.+.. ...+. .++ ..+.++||||....
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----- 83 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGKFNS-KFITTVGIDFREKRVVY-RANGPDGAVGRGQRIHLQLWDTAGLERF----- 83 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEEE-CTTSCCCSSCCCEEEEEEEEEECCSGGG-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCc-CcccccceeeeeEEEEE-ecCCcccccccCcEEEEEEEeCCCcHHH-----
Confidence 3589999999999999999999864321 11221111111 11122 222 37899999997431
Q ss_pred CCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHH
Q 011511 439 SGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQ 474 (484)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~ 474 (484)
. ......++.+|++++|+|+..+.+-+
T Consensus 84 -----~----~~~~~~~~~~d~~i~v~d~~~~~s~~ 110 (195)
T 3bc1_A 84 -----R----SLTTAFFRDAMGFLLLFDLTNEQSFL 110 (195)
T ss_dssp -----H----HHHHHTTTTCSEEEEEEETTCHHHHH
T ss_pred -----H----HHHHHHHcCCCEEEEEEECCCHHHHH
Confidence 1 11334578999999999997754443
No 294
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.72 E-value=6e-08 Score=97.52 Aligned_cols=156 Identities=19% Similarity=0.138 Sum_probs=88.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcce----eeecCCCceeeeeEEEEEeC-CceeeEeeccccccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRA----IVVDEPGVTRDRMYGRSFWG-EHEFMLVDTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~----~~~~~~~~t~~~~~~~~~~~-~~~i~liDtpG~~~~~~~~~~~~~~~~~ 237 (484)
...|+|+|++|+|||||+|.|+|.... .......+++.... .... ...++++|+||+...... .
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v--~q~~~~~~ltv~D~~g~~~~~~~---~------ 137 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNVVFWDLPGIGSTNFP---P------ 137 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEE--EECSSCTTEEEEECCCGGGSSCC---H------
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEe--ccccccCCeeehHhhcccchHHH---H------
Confidence 458999999999999999999985211 11111111221111 1111 135899999998532110 0
Q ss_pred hhhcccCCCchhHHHHHHhhchHHHHHHHHH--HhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCC
Q 011511 238 TTTIGMEGIPLATREAAVARMPSMIERQATA--AIEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 238 ~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~--~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl 315 (484)
..+.. .+...+..++ ++... ....+..+...+... ++|+++|+||.|+
T Consensus 138 --------------------------~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~--~~p~~lV~tkpdl 187 (413)
T 1tq4_A 138 --------------------------DTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMM--KKEFYFVRTKVDS 187 (413)
T ss_dssp --------------------------HHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHT--TCEEEEEECCHHH
T ss_pred --------------------------HHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhc--CCCeEEEEecCcc
Confidence 01111 1233455554 76543 345555666777664 7999999999985
Q ss_pred Cc-------------hhhhhhHH-HH-----hcC---CCceeeec--ccCCCCchhhHHHHHHhhhcc
Q 011511 316 PR-------------KGIMQVSE-FW-----SLG---FSPLPISA--ISGTGTGELLDLVCSELKKVE 359 (484)
Q Consensus 316 ~~-------------~~~~~~~~-~~-----~~~---~~~i~vSa--~~g~gi~~L~~~i~~~l~~~~ 359 (484)
.- ........ +. ..+ ..++.+|+ ..+.|+++|.+.+.+.+++..
T Consensus 188 llLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 188 DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred cccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 41 11111111 11 222 25688999 566779999999988876543
No 295
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.72 E-value=7e-09 Score=108.00 Aligned_cols=96 Identities=20% Similarity=0.257 Sum_probs=69.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee---------------ec------CCCCceecccceeeecCCCCcEEEEEcCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI---------------VS------PISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~---------------~~------~~~gtt~~~~~~~~~~~~g~~i~liDTPG 429 (484)
..+|+++|++|+|||||+|+|++..... +. ...|+|.......+. +.+..+.||||||
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~liDTPG 91 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFP-YKDYLINLLDTPG 91 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEE-ETTEEEEEECCCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEE-eCCEEEEEEECCC
Confidence 4589999999999999999997321110 00 113556555544444 3577899999999
Q ss_pred CccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
..+.. ..+.+.++.+|++++|+|+..++..+...++++
T Consensus 92 ~~df~--------------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~ 129 (528)
T 3tr5_A 92 HADFT--------------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV 129 (528)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred chhHH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 86532 125567889999999999999999888877644
No 296
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.72 E-value=1.8e-08 Score=88.16 Aligned_cols=85 Identities=26% Similarity=0.295 Sum_probs=55.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|+|++..... ..+..|.+.......+. .....+.++||||..... ..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~----------~~---- 68 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFA----------SL---- 68 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGG----------GG----
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCChhhh----------hh----
Confidence 479999999999999999999875332 22333444333222221 112368999999964321 11
Q ss_pred HHHHhhcCcEEEEEEeCcccc
Q 011511 451 AFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+.++-
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~ 89 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQ 89 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHH
T ss_pred hhhhhccCcEEEEEEecCChH
Confidence 223568999999999998753
No 297
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.71 E-value=2.3e-08 Score=89.88 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=56.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec-CCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS-PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~-~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++....... +..|.+......... ..+..+.+|||||..... . .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~------~-~------ 90 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYR------A-I------ 90 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTC------T-T------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhh------h-h------
Confidence 358999999999999999999987644322 222433322222221 123567899999985431 1 1
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
....++.+|++++|+|+..+.+
T Consensus 91 -~~~~~~~~d~vi~v~D~~~~~s 112 (193)
T 2oil_A 91 -TSAYYRGAVGALLVFDLTKHQT 112 (193)
T ss_dssp -HHHHHTTCCEEEEEEETTCHHH
T ss_pred -hHHHhccCCEEEEEEECCCHHH
Confidence 1234678999999999876443
No 298
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.71 E-value=2.6e-08 Score=86.80 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=52.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|+|++.... ....+++.......+.. ++ ..+.++||||..... .
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~--------------~ 67 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA--------------A 67 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CH--------------H
T ss_pred EEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEE-CCEEEEEEEEECCCcchhH--------------H
Confidence 58999999999999999999987532 22223333222222222 33 368899999964321 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+..+
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHHhhcCCEEEEEEECCCH
Confidence 122346789999999998764
No 299
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.71 E-value=9.9e-09 Score=101.58 Aligned_cols=84 Identities=19% Similarity=0.333 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcC------ccee-------------------------------ecCCC------Cce
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGE------DRTI-------------------------------VSPIS------GTT 406 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~------~~~~-------------------------------~~~~~------gtt 406 (484)
....|+|+|+||+|||||+|.|++. ++.. +.+.+ |+|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 3568999999999999999999962 1111 11222 345
Q ss_pred ecccceeee-cCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 407 RDAIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 407 ~~~~~~~~~-~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
++....... ...+.+++++||||+..+. . .....+|++++|+|+..+
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~-----------~------~l~~~~d~vl~V~d~~~~ 200 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE-----------F------AVADMVDMFVLLLPPAGG 200 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH-----------H------HHHTTCSEEEEEECCC--
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh-----------h------hHHhhCCEEEEEEcCCcc
Confidence 443222111 1357789999999986421 1 114589999999998654
No 300
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.69 E-value=2.6e-08 Score=89.57 Aligned_cols=85 Identities=22% Similarity=0.228 Sum_probs=57.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++.... ....++++.+.....+.. ++ ..+.+|||||...... .
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------~------ 81 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT------I------ 81 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-SCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT------T------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh------h------
Confidence 358999999999999999999986532 333344444433333332 33 3688999999643211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+.++-
T Consensus 82 --~~~~~~~~d~~i~v~d~~~~~ 102 (196)
T 3tkl_A 82 --TSSYYRGAHGIIVVYDVTDQE 102 (196)
T ss_dssp --HHHHHTTCSEEEEEEETTCHH
T ss_pred --HHHHHhhCCEEEEEEECcCHH
Confidence 223468899999999988643
No 301
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.69 E-value=2.1e-08 Score=90.07 Aligned_cols=93 Identities=15% Similarity=0.048 Sum_probs=55.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCC-------CCcee--cccceeeecCC--CCcEEEEEcCCCccCccccCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPI-------SGTTR--DAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASS 439 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~-------~gtt~--~~~~~~~~~~~--g~~i~liDTPG~~~~~~~~~~ 439 (484)
..+|+++|.+|+|||||+|.|.+......... ...|. +.....+...+ ...+.+|||||.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----- 88 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN----- 88 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS-----
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH-----
Confidence 35899999999999999999988643221110 01121 11111110112 2358899999974321
Q ss_pred CCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhh
Q 011511 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADW 477 (484)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~ 477 (484)
. .....++.+|++++|+|+..+...++..
T Consensus 89 -----~----~~~~~~~~~d~~i~v~D~~~~~~~~~~~ 117 (198)
T 3t1o_A 89 -----A----SRKLILRGVDGIVFVADSAPNRLRANAE 117 (198)
T ss_dssp -----H----HHHHHTTTCCEEEEEEECCGGGHHHHHH
T ss_pred -----H----HHHHHHhcCCEEEEEEECCcchhhHhHH
Confidence 0 1123578999999999998554444443
No 302
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.69 E-value=3.4e-08 Score=86.50 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=52.1
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee--ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|+|++..... ......+++... ........+.++||||..+.. .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~---~~~~~~~~~~~~Dt~G~~~~~--------------~ 66 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI---SCDKSICTLQITDTTGSHQFP--------------A 66 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEE---EETTEEEEEEEEECCSCSSCH--------------H
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEE---EECCEEEEEEEEECCCchhhH--------------H
Confidence 479999999999999999999864321 111112222211 111122357899999975321 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 67 MQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp HHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHhcccCCEEEEEEECcCH
Confidence 122346779999999998764
No 303
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.69 E-value=1.9e-08 Score=91.01 Aligned_cols=87 Identities=25% Similarity=0.238 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-eecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|++.... ...+..|++.......+. .....+.+|||||.... . .
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~----------~----~ 92 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERF----------R----S 92 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTC----------H----H
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcch----------h----h
Confidence 468999999999999999999987532 223333443322222221 11245889999996432 1 1
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
.....++.+|++++|+|+..+.+
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s 115 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKS 115 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHH
T ss_pred hHHHHHhhCCEEEEEEECCChHH
Confidence 12345678999999999876543
No 304
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.69 E-value=1.6e-08 Score=92.81 Aligned_cols=89 Identities=22% Similarity=0.282 Sum_probs=58.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-eecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRT-IVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
..+|+++|.+|+|||||+|+|++.... ......|++...... ....+ ..+.+|||||....... .
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~------~---- 78 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTF--LDDQGNVIKFNVWDTAGQEKKAVL------K---- 78 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEE--EBTTSCEEEEEEEEECSGGGTSCC------C----
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEE--EeCCCcEEEEEEEecCCchhhchH------H----
Confidence 358999999999999999999976432 223444544433222 22222 35899999997543211 1
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHHh
Q 011511 448 VNRAFRAIRRSDVVALVIEAMACITEQA 475 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~d 475 (484)
...++.+|++++|+|+.++.+.++
T Consensus 79 ----~~~~~~~d~~i~v~d~~~~~s~~~ 102 (218)
T 4djt_A 79 ----DVYYIGASGAILFFDVTSRITCQN 102 (218)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHT
T ss_pred ----HHHhhcCCEEEEEEeCCCHHHHHH
Confidence 123678999999999987655444
No 305
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.68 E-value=2.3e-08 Score=103.21 Aligned_cols=94 Identities=20% Similarity=0.183 Sum_probs=62.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcc------eeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchh
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDR------TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTE 444 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~------~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~ 444 (484)
..+|+++|..++|||||+|+|++... +.....+|+|.+.....+.. ++..+.+|||||..+
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~------------ 85 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD------------ 85 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH------------
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH------------
Confidence 35899999999999999999998761 22334567888776555543 677899999999632
Q ss_pred HHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 445 ALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 445 ~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
....+...++.+|++++|+|+...+..+....+
T Consensus 86 --~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l 118 (482)
T 1wb1_A 86 --LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM 118 (482)
T ss_dssp --HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH
T ss_pred --HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH
Confidence 134455678899999999999987766665544
No 306
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.68 E-value=2.4e-08 Score=88.11 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=55.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.|++.... ....+.++.+.....+.. ++ ..+.++||||...... .
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~------~------- 79 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFRS------L------- 79 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGG------G-------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHHH------H-------
Confidence 58999999999999999999976432 223344443333333332 33 3689999999643211 0
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 80 -~~~~~~~~d~~i~v~d~~~~ 99 (179)
T 2y8e_A 80 -IPSYIRDSTVAVVVYDITNT 99 (179)
T ss_dssp -SHHHHHTCSEEEEEEETTCH
T ss_pred -HHHHhcCCCEEEEEEECCCH
Confidence 11346789999999998764
No 307
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.68 E-value=1.6e-08 Score=102.24 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCc-------cee---ec------CCCCceecccceeeecCCCCcEEEEEcCCCccCc
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGED-------RTI---VS------PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~-------~~~---~~------~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
..+|+++|++|+|||||+|+|++.. .+. .. ...|.|.+.....+. ..+..+.+|||||..+.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~f- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADY- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGG-
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHHH-
Confidence 4589999999999999999999731 110 00 124677766554444 35688999999997532
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
...+...++.+|++++|+|+..+...+.+..+
T Consensus 89 -------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l 120 (405)
T 2c78_A 89 -------------IKNMITGAAQMDGAILVVSAADGPMPQTREHI 120 (405)
T ss_dssp -------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH
T ss_pred -------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH
Confidence 23345667899999999999988877776554
No 308
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.67 E-value=2.2e-08 Score=91.38 Aligned_cols=85 Identities=26% Similarity=0.216 Sum_probs=57.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++... .....++++++.....+.. ++ ..+.+|||||...... .
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------~------ 85 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT------I------ 85 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC------C------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH------H------
Confidence 46899999999999999999998653 2333344443333333332 34 4689999999754211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+-
T Consensus 86 --~~~~~~~~d~ii~v~d~~~~~ 106 (213)
T 3cph_A 86 --TTAYYRGAMGIILVYDVTDER 106 (213)
T ss_dssp --CHHHHTTCSEEEEEEETTCHH
T ss_pred --HHHHhccCCEEEEEEECCCHH
Confidence 123467899999999987643
No 309
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.67 E-value=2.5e-08 Score=88.33 Aligned_cols=87 Identities=18% Similarity=0.201 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec-CCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS-PISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~-~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++....... +..|.+.......+. ..+..+.+|||||...... .
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~-------~------ 77 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-DATVKFEIWDTAGQERYHS-------L------ 77 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-TEEEEEEEEECCCSGGGGG-------G------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-CEEEEEEEEeCCCChhhhh-------h------
Confidence 358999999999999999999987543221 122322222211111 1134789999999643210 0
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
....++.+|++++|+|+..+.+
T Consensus 78 -~~~~~~~~d~~i~v~d~~~~~s 99 (181)
T 2efe_B 78 -APMYYRGAAAAIIVFDVTNQAS 99 (181)
T ss_dssp -THHHHTTCSEEEEEEETTCHHH
T ss_pred -hHHHhccCCEEEEEEECCCHHH
Confidence 1234678999999999876543
No 310
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.67 E-value=3.7e-08 Score=88.29 Aligned_cols=81 Identities=17% Similarity=0.224 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++..... ..+..|.+.. .+. ..+..+.+|||||..... .
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~----~~~-~~~~~~~l~Dt~G~~~~~--------------~ 82 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR----KIT-KGNVTIKLWDIGGQPRFR--------------S 82 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE----EEE-ETTEEEEEEEECCSHHHH--------------T
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE----EEE-eCCEEEEEEECCCCHhHH--------------H
Confidence 4589999999999999999999865431 2222333322 122 346788999999964311 0
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 83 ~~~~~~~~~d~ii~v~D~~~~ 103 (188)
T 1zd9_A 83 MWERYCRGVSAIVYMVDAADQ 103 (188)
T ss_dssp THHHHHTTCSEEEEEEETTCG
T ss_pred HHHHHHccCCEEEEEEECCCH
Confidence 122346899999999998763
No 311
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.67 E-value=3.2e-08 Score=98.61 Aligned_cols=82 Identities=22% Similarity=0.298 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+|+|||||+|+|+ ..|.|.+.....+. .++..+.+|||||..+. ...+.
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~-~~~~~i~iiDtPGh~~f--------------~~~~~ 78 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNND-KEGRNMVFVDAHSYPKT--------------LKSLI 78 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEEC-SSSSEEEEEECTTTTTC--------------HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEe-cCCeEEEEEECCChHHH--------------HHHHH
Confidence 89999999999999999998 23666666554544 45678999999998543 23344
Q ss_pred HHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 453 RAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
..++.+|++++|+| ......+.+..+
T Consensus 79 ~~~~~aD~ailVvd-~~g~~~qt~e~~ 104 (370)
T 2elf_A 79 TALNISDIAVLCIP-PQGLDAHTGECI 104 (370)
T ss_dssp HHHHTCSEEEEEEC-TTCCCHHHHHHH
T ss_pred HHHHHCCEEEEEEc-CCCCcHHHHHHH
Confidence 56789999999999 777766555433
No 312
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.67 E-value=3.9e-08 Score=87.71 Aligned_cols=82 Identities=22% Similarity=0.299 Sum_probs=53.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc--EEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK--FRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~--i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|+|++... ....++++.+....... .++.. +.+|||||...... .
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~------- 68 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYSA------M------- 68 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEE-ETTEEEEEEEEECCCC---CT------T-------
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEE-ECCcEEEEEEEECCCcHHHHH------H-------
Confidence 5899999999999999999998753 23334444433333332 23443 66799999654211 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 69 -RDQYMRTGEGFLCVFAINNT 88 (189)
T ss_dssp -HHHHHHHCSEEEEEEETTCH
T ss_pred -HHHHHhcCCEEEEEEECCCH
Confidence 11345679999999998764
No 313
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.66 E-value=2.9e-08 Score=89.08 Aligned_cols=86 Identities=22% Similarity=0.212 Sum_probs=56.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|++..... ..+..|++.......+. ..+..+.+|||||...... .
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~------~------- 80 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFRT------L------- 80 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGCC------S-------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-CeEEEEEEEeCCCchhhhh------h-------
Confidence 3589999999999999999999875321 22333444333222221 1234688999999753211 1
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+-
T Consensus 81 -~~~~~~~~d~ii~v~d~~~~~ 101 (195)
T 1x3s_A 81 -TPSYYRGAQGVILVYDVTRRD 101 (195)
T ss_dssp -HHHHHTTCCEEEEEEETTCHH
T ss_pred -hHHHhccCCEEEEEEECcCHH
Confidence 123468899999999987653
No 314
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.66 E-value=4.1e-08 Score=85.44 Aligned_cols=82 Identities=21% Similarity=0.201 Sum_probs=52.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|++++...... ...++.+.....+.. ++. .+.++||||..... .
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~----------~---- 66 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFIEK--YDPTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA----------S---- 66 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSC--CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------H----
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCccc--CCCCcceeEEEEEEE-CCEEEEEEEEECCCchhhH----------H----
Confidence 4799999999999999999998653322 222222222222222 333 48899999964321 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~ 87 (167)
T 1kao_A 67 MRDLYIKNGQGFILVYSLVNQ 87 (167)
T ss_dssp HHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHHhccCCEEEEEEeCCCH
Confidence 112346789999999998863
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.66 E-value=2.5e-08 Score=87.02 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC-CCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~-g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|++.... ....+..+.+.....+...+ ...+.++||||...... .
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~------- 70 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGIFT-KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA------I------- 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCC-CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC------C-------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH------H-------
Confidence 358999999999999999999986432 22222222222222222211 23689999999643211 1
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+-
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~ 91 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDRE 91 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCHH
T ss_pred -HHHHhcCCCEEEEEEECcCHH
Confidence 123467899999999987643
No 316
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.66 E-value=1.9e-08 Score=88.09 Aligned_cols=84 Identities=24% Similarity=0.208 Sum_probs=53.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|+|++.... ....++++.+.....+.. ++ ..+.++||||...... .
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~------~------- 68 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRT------I------- 68 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSC------C-------
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhh------h-------
Confidence 47999999999999999999986532 223333333332223332 33 3678999999654211 1
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+.
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~~ 89 (170)
T 1g16_A 69 -TTAYYRGAMGIILVYDITDER 89 (170)
T ss_dssp -CHHHHTTEEEEEEEEETTCHH
T ss_pred -HHHHhccCCEEEEEEECCCHH
Confidence 123467899999999987643
No 317
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.65 E-value=4.3e-08 Score=86.53 Aligned_cols=87 Identities=21% Similarity=0.166 Sum_probs=55.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++...... .+..|.+......... .....+.+|||||..... .
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~--------------~ 79 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFR--------------A 79 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTC--------------H
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCChHhh--------------h
Confidence 35899999999999999999998754321 1222333222221211 112368999999964321 1
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
.....++.+|++++|+|+..+.+
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s 102 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRST 102 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHH
T ss_pred hHHHHhccCCEEEEEEeCcCHHH
Confidence 12345678999999999987543
No 318
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.65 E-value=1.6e-08 Score=93.09 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=61.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhh-cCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALV-GEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll-g~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+++ +.......+..|+++........ ..+..+.+|||||...... ..
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~------~~------ 81 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGG------LR------ 81 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSC------CC------
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhH------HH------
Confidence 3589999999999999999955 44445567778888876554442 2345688999999643321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
...++.+|++++|+|+..+-+
T Consensus 82 --~~~~~~~~~~i~v~d~~~~~s 102 (221)
T 3gj0_A 82 --DGYYIQAQCAIIMFDVTSRVT 102 (221)
T ss_dssp --HHHHTTCCEEEEEEETTCHHH
T ss_pred --HHHHhcCCEEEEEEECCCHHH
Confidence 124678999999999987543
No 319
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.65 E-value=5.2e-08 Score=86.61 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=54.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... .....++.......+.. ++ ..+.+|||||..... .
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~-- 81 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA-----------A-- 81 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------H--
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEE-CCEEEEEEEEECCCCcccH-----------H--
Confidence 358999999999999999999987532 22233333322222322 33 368899999964321 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+..+
T Consensus 82 -~~~~~~~~~d~~i~v~d~~~~ 102 (187)
T 2a9k_A 82 -IRDNYFRSGEGFLCVFSITEM 102 (187)
T ss_dssp -HHHHHHHHCSEEEEEEETTCH
T ss_pred -HHHHHhccCCEEEEEEECcCH
Confidence 122346789999999998764
No 320
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.65 E-value=1.6e-08 Score=91.90 Aligned_cols=87 Identities=20% Similarity=0.255 Sum_probs=35.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCcee-cccceeeecCC---CCcEEEEEcCCCccCccccCCCCchhHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTR-DAIDTEFTGPE---GQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~-~~~~~~~~~~~---g~~i~liDTPG~~~~~~~~~~~~~~~~~ 446 (484)
..+|+++|.+|+|||||+|.|++...........|+. +.....+...+ ...+.+|||||.....
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------------ 87 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK------------ 87 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH------------
Confidence 3589999999999999999999873222222233332 33333343322 2368999999974210
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccc
Q 011511 447 SVNRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 88 --~~~~~~~~~~d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 88 --EQISQYWNGVYYAILVFDVSSME 110 (208)
T ss_dssp --HHHSTTCCCCCEEEEEEETTCHH
T ss_pred --HHHHHHHhhCcEEEEEEECCCHH
Confidence 11223467899999999987653
No 321
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.65 E-value=5.2e-08 Score=88.30 Aligned_cols=83 Identities=22% Similarity=0.277 Sum_probs=55.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++... .....+++.......+.. ++. .+.+|||||..... .
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------~--- 77 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------A--- 77 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH----------H---
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH----------H---
Confidence 45899999999999999999998753 223333433332223332 332 68899999964321 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+..+
T Consensus 78 -~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 78 -IRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp -HHHHHHHHCSEEEEEEETTCH
T ss_pred -HHHHHHhhCCEEEEEEECCCH
Confidence 122346789999999998763
No 322
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.64 E-value=3.9e-08 Score=88.51 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
..+|+++|.+|+|||||+|.|++...... .+..|.+... ..+.. ++ ..+.+|||||.... .
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~-~~~~~~l~l~Dt~G~~~~----------~--- 89 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKI--KTVEL-RGKKIRLQIWDTAGQERF----------N--- 89 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEE--EEEEE-TTEEEEEEEEEECCSGGG----------H---
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEE--EEEEE-CCeEEEEEEEeCCCcHHH----------H---
Confidence 35899999999999999999998754322 2222333222 22222 23 36899999996421 1
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHH
Q 011511 448 VNRAFRAIRRSDVVALVIEAMACITEQ 474 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~ 474 (484)
......++.+|++++|+|+..+.+-+
T Consensus 90 -~~~~~~~~~~d~iilV~D~~~~~s~~ 115 (192)
T 2il1_A 90 -SITSAYYRSAKGIILVYDITKKETFD 115 (192)
T ss_dssp -HHHHHHHHHCSEEEEEEETTCHHHHH
T ss_pred -HHHHHHhcCCCEEEEEEECcCHHHHH
Confidence 11234567899999999998754443
No 323
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.64 E-value=3.1e-08 Score=88.28 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....+.++.+.....+.. ++ ..+.+|||||.... .
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------~---- 73 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEKKFK-DDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERF----------R---- 73 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGG----------H----
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHH----------H----
Confidence 358999999999999999999986532 222333333322222222 33 36889999996431 1
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~ 96 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRE 96 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHH
Confidence 11234578899999999987643
No 324
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.64 E-value=4.6e-08 Score=86.46 Aligned_cols=83 Identities=22% Similarity=0.266 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++... .....+++.......+. .++ ..+.+|||||..... ...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~------~~~----- 74 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICS-VDGIPARLDILDTAGQEEFG------AMR----- 74 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEE-ETTEEEEEEEEECCCTTTTS------CCH-----
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEE-ECCEEEEEEEEECCCchhhH------HHH-----
Confidence 35899999999999999999998742 23333444433332232 233 367889999975431 111
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 75 ---~~~~~~~d~~i~v~d~~~~ 93 (181)
T 2fn4_A 75 ---EQYMRAGHGFLLVFAINDR 93 (181)
T ss_dssp ---HHHHHHCSEEEEEEETTCH
T ss_pred ---HHHHhhCCEEEEEEeCCCH
Confidence 1235689999999998763
No 325
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.64 E-value=4e-08 Score=89.04 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=55.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
.+|+++|.+|+|||||+|.|++..... ..+..|++......... ..+..+.+|||||..... ..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~--------------~~ 73 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-DKRIKLQIWDTAGLERYR--------------TI 73 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGH--------------HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhc--------------ch
Confidence 589999999999999999999875322 22333444332222221 123478999999974321 11
Q ss_pred HHHHhhcCcEEEEEEeCccc
Q 011511 451 AFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 74 ~~~~~~~~d~ii~v~d~~~~ 93 (203)
T 1zbd_A 74 TTAYYRGAMGFILMYDITNE 93 (203)
T ss_dssp HHTTGGGCSEEEEEEETTCH
T ss_pred HHHhhcCCCEEEEEEECcCH
Confidence 23457899999999998764
No 326
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.64 E-value=7.7e-08 Score=92.20 Aligned_cols=61 Identities=41% Similarity=0.526 Sum_probs=40.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecccccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~~ 225 (484)
...+|+++|.+|||||||+|+|+|.....+++.+++|+.... +.+ +..+.++||||+....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~~ 179 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWPK 179 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEE--EEe-CCCEEEEECcCcCCCC
Confidence 357899999999999999999999887788889999887753 233 5579999999997543
No 327
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.64 E-value=3.8e-08 Score=86.84 Aligned_cols=85 Identities=20% Similarity=0.258 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....++.+.+.....+.. ++ ..+.+|||||.....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-------------- 70 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNKFD-TQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFR-------------- 70 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-C----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGH--------------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhh--------------
Confidence 358999999999999999999986432 222233322222222222 33 368999999963211
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~ 93 (177)
T 1wms_A 71 SLRTPFYRGSDCCLLTFSVDDSQ 93 (177)
T ss_dssp HHHGGGGTTCSEEEEEEETTCHH
T ss_pred hhHHHHHhcCCEEEEEEECcCHH
Confidence 11224567899999999987653
No 328
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.64 E-value=5.6e-08 Score=84.72 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=52.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|+|++..... ....++......... .++ ..+.++||||..... . .
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~~l~D~~G~~~~~------~-~------ 67 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVE-VDCQQCMLEILDTAGTEQFT------A-M------ 67 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEE-SSSCEEEEEEEEECSSCSST------T-H------
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEE-ECCEEEEEEEEECCChHHHH------H-H------
Confidence 479999999999999999999864321 122222222222222 233 357899999975421 0 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 68 -~~~~~~~~d~~i~v~d~~~~ 87 (167)
T 1c1y_A 68 -RDLYMKNGQGFALVYSITAQ 87 (167)
T ss_dssp -HHHHHHHCSEEEEEEETTCH
T ss_pred -HHHHhccCCEEEEEEECCCH
Confidence 11345679999999998764
No 329
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.63 E-value=5.5e-08 Score=99.27 Aligned_cols=93 Identities=23% Similarity=0.308 Sum_probs=60.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee----------ecCCCCc----------------------eecccceeeecCCC
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI----------VSPISGT----------------------TRDAIDTEFTGPEG 419 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~----------~~~~~gt----------------------t~~~~~~~~~~~~g 419 (484)
.+|+++|..|+|||||+|+|++..... +...+|+ |.+.....+. ..+
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~-~~~ 103 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS-TAK 103 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE-CSS
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee-cCC
Confidence 589999999999999999998754211 1112333 3332222222 356
Q ss_pred CcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 420 QKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 420 ~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
..+.+|||||..+. ...+...++.+|++++|+|+..++..+.+..+
T Consensus 104 ~~~~iiDtpGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l 149 (434)
T 1zun_B 104 RKFIIADTPGHEQY--------------TRNMATGASTCDLAIILVDARYGVQTQTRRHS 149 (434)
T ss_dssp EEEEEEECCCSGGG--------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH
T ss_pred ceEEEEECCChHHH--------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 78999999997432 12233457899999999999988777665433
No 330
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.63 E-value=5.5e-08 Score=101.38 Aligned_cols=96 Identities=20% Similarity=0.278 Sum_probs=65.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee---------------ec------CCCCceecccceeeecCCCCcEEEEEcCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI---------------VS------PISGTTRDAIDTEFTGPEGQKFRLIDTAG 429 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~---------------~~------~~~gtt~~~~~~~~~~~~g~~i~liDTPG 429 (484)
..+|+++|++|+|||||+|.|++..... +. ...|.|.......+. +.+..+.||||||
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~liDTPG 91 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFP-YHDCLVNLLDTPG 91 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEE-ETTEEEEEECCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEE-ECCeEEEEEECCC
Confidence 4589999999999999999999642111 11 133555554444444 4677899999999
Q ss_pred CccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 430 IRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
..+.. ..+.+.++.+|++++|+|+..++..+...+++.
T Consensus 92 ~~df~--------------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~ 129 (529)
T 2h5e_A 92 HEDFS--------------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEV 129 (529)
T ss_dssp STTCC--------------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred ChhHH--------------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHH
Confidence 86531 124456889999999999999888887776644
No 331
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.62 E-value=5.1e-08 Score=98.33 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=66.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcc------ee---------ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDR------TI---------VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAI 436 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~------~~---------~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~ 436 (484)
.+|+++|+.|+|||||+|+|++... +. .....|.|.+.....+. ..+..+.+|||||..+.
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~~f--- 79 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHADY--- 79 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHHH---
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChHHH---
Confidence 4799999999999999999997411 00 01135777776544443 35688999999997421
Q ss_pred cCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 437 ASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
...+...++.+|++++|+|+..+...+.+..+
T Consensus 80 -----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l 111 (397)
T 1d2e_A 80 -----------VKNMITGTAPLDGCILVVAANDGPMPQTREHL 111 (397)
T ss_dssp -----------HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH
T ss_pred -----------HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH
Confidence 23345667899999999999988777765544
No 332
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.62 E-value=2.8e-08 Score=87.79 Aligned_cols=87 Identities=17% Similarity=0.121 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC--CCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE--GQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~--g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|.+..... ...+.++.+.....+...+ ...+.+|||||..... ..
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~------~~------ 72 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQETFGK-QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG------KM------ 72 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGGTTH-HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC------TT------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCcCCC-CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc------ch------
Confidence 3589999999999999999999865321 1111121222222233222 1578999999964321 11
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
....++.+|++++|+|+..+-+
T Consensus 73 --~~~~~~~~d~~i~v~d~~~~~s 94 (178)
T 2hxs_A 73 --LDKYIYGAQGVLLVYDITNYQS 94 (178)
T ss_dssp --HHHHHTTCSEEEEEEETTCHHH
T ss_pred --hhHHHhhCCEEEEEEECCCHHH
Confidence 1234688999999999876433
No 333
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.62 E-value=5.2e-08 Score=94.89 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=77.0
Q ss_pred eeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEE
Q 011511 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (484)
Q Consensus 200 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilV 279 (484)
......+.+++..+.+|||+|....+..+. .++..++++|+|
T Consensus 156 Gi~~~~~~~~~v~l~iwDtgGQe~~R~~w~--------------------------------------~yf~~~~~iIfV 197 (327)
T 3ohm_A 156 GIIEYPFDLQSVIFRMVDVGGQRSERRKWI--------------------------------------HCFENVTSIMFL 197 (327)
T ss_dssp SEEEEEEEETTEEEEEEEECCSHHHHTTGG--------------------------------------GGCSSCSEEEEE
T ss_pred eEEEEEEEeeceeeEEEEcCCchhHHHHHH--------------------------------------HHhCCCCEEEEE
Confidence 334455667788899999999987665554 345778999999
Q ss_pred eeCC-------CCCCcc-cHHHHHHHHh-----hcCCCeEEEEecccCCCchhh-------------------hhhHHHH
Q 011511 280 VDGQ-------AGLTAA-DEEIADWLRK-----NYMDKFIILAVNKCESPRKGI-------------------MQVSEFW 327 (484)
Q Consensus 280 vD~~-------~~~~~~-~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~~~-------------------~~~~~~~ 327 (484)
+|.+ +..... -.+...++.. .+.+.|+++++||+|+..... .....+.
T Consensus 198 ~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi 277 (327)
T 3ohm_A 198 VALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFI 277 (327)
T ss_dssp EEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHH
T ss_pred EECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHH
Confidence 9765 211111 1123333332 225789999999999764321 1111221
Q ss_pred -----------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 328 -----------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 328 -----------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..++.++.+||+++.|+..++..+.+.+.
T Consensus 278 ~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 278 LKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp HHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 12335678999999999999999887664
No 334
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.62 E-value=3.6e-08 Score=106.26 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-----------ecC------CCCceecccceeeecCCCCcEEEEEcCCCccC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-----------~~~------~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
..+|+++|++|+|||||+|+|++..... +.+ ..|+|+......+. +.+.++.||||||..+.
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCcch
Confidence 3589999999999999999999522110 111 24666665554444 45788999999998653
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
. ..+.+.++.+|++|+|+|+..+++.++..++++
T Consensus 89 ~--------------~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~ 122 (693)
T 2xex_A 89 T--------------VEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122 (693)
T ss_dssp C--------------HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred H--------------HHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH
Confidence 1 113456788999999999999999888776643
No 335
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.61 E-value=4.2e-08 Score=87.84 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++..... ..+..|++......... ..+..+.+|||||...... ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~------~~------ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-DKRIKLQIWDTAGQERYRT------IT------ 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-TEEEEEEEEECCSCCSSCC------SG------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-CeEEEEEEEeCCCcHHHhh------hH------
Confidence 3589999999999999999999875432 12333444433222221 1234789999999754321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 89 --~~~~~~~d~ii~v~d~~~~ 107 (189)
T 2gf9_A 89 --TAYYRGAMGFLLMYDIANQ 107 (189)
T ss_dssp --GGGGTTCSEEEEEEETTCH
T ss_pred --HHhccCCCEEEEEEECCCH
Confidence 1246789999999998764
No 336
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.60 E-value=3e-08 Score=102.14 Aligned_cols=94 Identities=22% Similarity=0.296 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
+.++|+++|+.|+|||||+++|++.. +..+..+|+|.+.....+. +++..+.+|||||..++....
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~-v~~~e~~GIT~~i~~~~v~-~~~~~i~~iDTPGhe~f~~~~------------ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK-VASGEAGGITQHIGAYHVE-TENGMITFLDTPGHAAFTSMR------------ 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH-HSBTTBCCCCCCSSCCCCC-TTSSCCCEECCCTTTCCTTSB------------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC-CccccCCCeeEeEEEEEEE-ECCEEEEEEECCCcHHHHHHH------------
Confidence 35689999999999999999999854 3344556788776655554 467889999999976543211
Q ss_pred HHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 450 RAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
.+.++.+|++++|+|+.+++..+....+
T Consensus 69 --~~~~~~aD~aILVVda~~g~~~qT~e~l 96 (501)
T 1zo1_I 69 --ARGAQATDIVVLVVAADDGVMPQTIEAI 96 (501)
T ss_dssp --CSSSBSCSSEEEEEETTTBSCTTTHHHH
T ss_pred --HHHHhhCCEEEEEeecccCccHHHHHHH
Confidence 1236789999999999887766655544
No 337
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.60 E-value=6.2e-08 Score=86.76 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++..... ...+..+.+.....+.. ++ ..+.+|||||..... .
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------~--- 84 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPD-RTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFR----------K--- 84 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCS-SCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHH----------T---
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhh----------h---
Confidence 3589999999999999999999865332 11222222211122222 23 468999999963210 0
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
......++.+|++++|+|+..+
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~ 106 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNM 106 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCH
T ss_pred hhhHHHhcCCCEEEEEEECcCH
Confidence 1122346789999999998764
No 338
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.60 E-value=2.1e-08 Score=102.94 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=62.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCc-cee-----------------------------ecCCCCceecccceeeecCCCCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGED-RTI-----------------------------VSPISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~-~~~-----------------------------~~~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.+|+++|.+|+|||||+|+|++.. .+. .....|.|++.....+. ..+..
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~-~~~~~ 86 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFE-TPKYQ 86 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEE-CSSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEe-cCCce
Confidence 589999999999999999998641 000 00125778777666555 35678
Q ss_pred EEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccccc
Q 011511 422 FRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 422 i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
+.+|||||..+. ...+...++.+|++++|+|+..+..
T Consensus 87 ~~iiDtPGh~~f--------------~~~~~~~~~~aD~~ilVvda~~g~~ 123 (458)
T 1f60_A 87 VTVIDAPGHRDF--------------IKNMITGTSQADCAILIIAGGVGEF 123 (458)
T ss_dssp EEEEECCCCTTH--------------HHHHHHSSSCCSEEEEEEECSHHHH
T ss_pred EEEEECCCcHHH--------------HHHHHhhhhhCCEEEEEEeCCcCcc
Confidence 999999996421 2334566889999999999987643
No 339
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.59 E-value=4.3e-08 Score=85.77 Aligned_cols=85 Identities=19% Similarity=0.179 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+++.... ....+..+.+.....+.. ++. .+.+|||||.......
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~------------ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFN-DKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHAL------------ 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCC-SSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC------------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-cCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhh------------
Confidence 358999999999999999999986532 222233332222222322 333 5788899996432110
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+.++-
T Consensus 72 --~~~~~~~~d~~i~v~d~~~~~ 92 (170)
T 1z08_A 72 --GPIYYRDSNGAILVYDITDED 92 (170)
T ss_dssp ---CCSSTTCSEEEEEEETTCHH
T ss_pred --HHHHhccCCEEEEEEECcCHH
Confidence 112357889999999987643
No 340
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.59 E-value=3.7e-08 Score=86.22 Aligned_cols=84 Identities=13% Similarity=0.180 Sum_probs=47.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|++++......... .++.+.....+.. ++ ..+.++||||...... ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~----------~~-- 68 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEM-ENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGG----------WL-- 68 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEE-TTEEEEEEEECCCCC-------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccC-CCcCCeeeEEEEE-CCeEEEEEEEECCCccccch----------hh--
Confidence 3799999999999999999987643332222 2223222222222 33 3577999999854210 00
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 69 -~~~~~~~~d~~i~v~d~~~~ 88 (169)
T 3q85_A 69 -QDHCLQTGDAFLIVFSVTDR 88 (169)
T ss_dssp --CHHHHHCSEEEEEEETTCH
T ss_pred -hhhhhccCCEEEEEEECCCh
Confidence 11235679999999998763
No 341
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.59 E-value=2.7e-08 Score=88.09 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=50.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC--CCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP--EGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~--~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....+..+.+.....+... ....+.++||||.....
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 72 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------------- 72 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcCC-cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh--------------
Confidence 358999999999999999999986532 1222222222222233322 12368999999953321
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+.++-
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~ 95 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNAS 95 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHH
T ss_pred hhhHHHhhcCCEEEEEEECCChH
Confidence 01123467899999999987643
No 342
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.59 E-value=7.7e-08 Score=85.48 Aligned_cols=83 Identities=20% Similarity=0.176 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCc--EEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQK--FRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~--i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++..... . ...++......... .++.. +.+|||||...... .
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~-~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~------~------ 82 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKIFVD-D-YDPTIEDSYLKHTE-IDNQWAILDVLDTAGQEEFSA------M------ 82 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCS-C-CCTTCCEEEEEEEE-ETTEEEEEEEEECCSCGGGCS------S------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC-C-CCCCccceeEEEEE-eCCcEEEEEEEECCCchhhHH------H------
Confidence 4589999999999999999999864322 2 22222222222222 34444 45599999643211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+.++
T Consensus 83 --~~~~~~~~d~~i~v~d~~~~ 102 (183)
T 3kkq_A 83 --REQYMRTGDGFLIVYSVTDK 102 (183)
T ss_dssp --HHHHHHHCSEEEEEEETTCH
T ss_pred --HHHHHhcCCEEEEEEECCCH
Confidence 11346789999999999864
No 343
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.59 E-value=7.5e-08 Score=85.38 Aligned_cols=82 Identities=26% Similarity=0.280 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++... ......++......... .++ ..+.+|||||....... ..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~------~~---- 72 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQF--VDSYDPTIENTFTKLIT-VNGQEYHLQLVDTAGQDEYSIF------PQ---- 72 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEE-ETTEEEEEEEEECCCCCTTCCC------CG----
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCC--CCCCCCCccccEEEEEE-ECCEEEEEEEEeCCCchhhhHH------HH----
Confidence 35899999999999999999996542 22222333322222222 234 34689999997653211 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcc
Q 011511 449 NRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~ 469 (484)
..++.+|++++|+|+..
T Consensus 73 ----~~~~~~~~~i~v~d~~~ 89 (181)
T 3t5g_A 73 ----TYSIDINGYILVYSVTS 89 (181)
T ss_dssp ----GGTTTCSEEEEEEETTC
T ss_pred ----HHHhcCCEEEEEEECCC
Confidence 23568899999999876
No 344
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.58 E-value=5.1e-08 Score=88.52 Aligned_cols=85 Identities=22% Similarity=0.301 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....++.+.+.....+.. ++ ..+.+|||||....... .
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------~----- 74 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQSL------G----- 74 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGSCS------C-----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHh------H-----
Confidence 458999999999999999999987533 222333333332333332 33 36899999996543211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+..+.
T Consensus 75 ---~~~~~~~d~~i~v~d~~~~~ 94 (207)
T 1vg8_A 75 ---VAFYRGADCCVLVFDVTAPN 94 (207)
T ss_dssp ---CGGGTTCSEEEEEEETTCHH
T ss_pred ---HHHHhCCcEEEEEEECCCHH
Confidence 12357899999999987653
No 345
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.58 E-value=4.1e-08 Score=89.24 Aligned_cols=85 Identities=24% Similarity=0.233 Sum_probs=55.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....++.+.+.....+.. ++ ..+.+|||||...... ..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~------~~----- 74 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT------IT----- 74 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC------CC-----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH------HH-----
Confidence 358999999999999999999986532 222333333222222222 33 2689999999754321 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+..+.
T Consensus 75 ---~~~~~~~d~vilv~d~~~~~ 94 (206)
T 2bcg_Y 75 ---SSYYRGSHGIIIVYDVTDQE 94 (206)
T ss_dssp ---GGGGTTCSEEEEEEETTCHH
T ss_pred ---HHhccCCCEEEEEEECcCHH
Confidence 12367899999999987643
No 346
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.58 E-value=5.6e-08 Score=87.91 Aligned_cols=88 Identities=20% Similarity=0.231 Sum_probs=54.4
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
...+|+++|.+|+|||||+|.+++.. + ......|+.+.....+. .++. .+.+|||||...... ..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~---- 85 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG-Y-PTEYIPTAFDNFSAVVS-VDGRPVRLQLCDTAGQDEFDK------LR---- 85 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEE-ETTEEEEEEEEECCCSTTCSS------SG----
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCcccceeEEEEE-ECCEEEEEEEEECCCCHHHHH------Hh----
Confidence 34689999999999999999999875 2 22333444433332332 2443 456999999854321 11
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccccHH
Q 011511 448 VNRAFRAIRRSDVVALVIEAMACITEQ 474 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~~~~ 474 (484)
...++.+|++++|+|+..+-+-+
T Consensus 86 ----~~~~~~~~~~i~v~d~~~~~s~~ 108 (201)
T 2q3h_A 86 ----PLCYTNTDIFLLCFSVVSPSSFQ 108 (201)
T ss_dssp ----GGGGTTCSEEEEEEETTCHHHHH
T ss_pred ----HhhcCCCcEEEEEEECCCHHHHH
Confidence 12467899999999987654433
No 347
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.58 E-value=5.2e-08 Score=88.28 Aligned_cols=84 Identities=20% Similarity=0.226 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec-CCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~-~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|+|++...... ...++.......... ..+..+.+|||||....... .
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~------~------ 89 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFSEG--YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL------P------ 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSC--CCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCC------C------
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCC--CCCccceEEEEEEEECCEEEEEEEEECCCccchHHH------H------
Confidence 45899999999999999999998754322 122222222222221 12345689999997543211 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 90 --~~~~~~~d~~i~v~d~~~~ 108 (201)
T 3oes_A 90 --YSFIIGVHGYVLVYSVTSL 108 (201)
T ss_dssp --GGGTTTCCEEEEEEETTCH
T ss_pred --HHHHhcCCEEEEEEeCCCH
Confidence 1235789999999998753
No 348
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.58 E-value=5.3e-08 Score=88.51 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=54.8
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++... .....+..+.+.....+.. ++ ..+.+|||||.... .
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~----------~---- 89 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLF-PPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERF----------R---- 89 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSC-CTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG----------H----
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCC-CCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHH----------H----
Confidence 35899999999999999999998643 2222233333322222222 33 36889999996321 0
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 90 ~~~~~~~~~~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 90 SITQSYYRSANALILTYDITCEE 112 (201)
T ss_dssp HHHGGGSTTCSEEEEEEETTCHH
T ss_pred HHHHHHHhcCCEEEEEEECCCHH
Confidence 11224568899999999987643
No 349
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.58 E-value=5.2e-09 Score=110.65 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=39.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec------------------------------CCCCceecccceeeecCCCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS------------------------------PISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~------------------------------~~~gtt~~~~~~~~~~~~g~ 420 (484)
..+|+++|++|+|||||+|+|++....... ..+|+|++.....+.. .+.
T Consensus 177 ~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~~ 255 (592)
T 3mca_A 177 VVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DKK 255 (592)
T ss_dssp EEEEEEECCSSSTHHHHHHHHHHHHHCC----------------------------------------------------
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CCe
Confidence 458999999999999999999763221111 1458888877666653 578
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
.+.||||||..+.... +...++.+|++|+|+|+..
T Consensus 256 ~i~iiDTPGh~~f~~~--------------~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 256 IYEIGDAPGHRDFISG--------------MIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ---CCEEESSSEEEEE--------------CCC-------CCSEEEEEE
T ss_pred EEEEEECCChHHHHHH--------------HHHHHhhCCEEEEEEECCC
Confidence 8999999998654221 1123567899999999875
No 350
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.57 E-value=2.2e-08 Score=90.00 Aligned_cols=86 Identities=19% Similarity=0.147 Sum_probs=56.2
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
...+|+++|.+|+|||||+|.|++..... ..+..|++......... ..+..+.+|||||.... .
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~--------------~ 86 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-EKRVKLQIWDTAGQERY--------------R 86 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-TTTEEEEEECHHHHHHC--------------H
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-CEEEEEEEEeCCChHHH--------------H
Confidence 34589999999999999999999864221 12222444433322222 23456899999995321 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
......++.+|++++|+|+.++
T Consensus 87 ~~~~~~~~~~d~~i~v~d~~~~ 108 (191)
T 3dz8_A 87 TITTAYYRGAMGFILMYDITNE 108 (191)
T ss_dssp HHHHHHHTTCCEEEEEEETTCH
T ss_pred HHHHHHHccCCEEEEEEECcCH
Confidence 1133457899999999998753
No 351
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.57 E-value=6.5e-08 Score=100.57 Aligned_cols=89 Identities=20% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|||||||+|.|++.......++.|++. ..+. ..+..+.++||||...... .
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~----~~~~-~~~~~~~l~Dt~G~~~~~~------~-------- 382 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV----ETVT-YKNVKFNVWDVGGQDKIRP------L-------- 382 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE----EEEE-SSSCEEEEEEECCCGGGSG------G--------
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE----EEEE-eCCEEEEEEECCCcHHHHH------H--------
Confidence 4589999999999999999999987443333333333 2333 3577899999999654321 1
Q ss_pred HHHHhhcCcEEEEEEeCccc--ccHHhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMAC--ITEQADWR 478 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~~--~~~~d~~~ 478 (484)
....++.+|++|+|+|+.++ |..-..++
T Consensus 383 ~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~ 412 (497)
T 3lvq_E 383 WRHYYTGTQGLIFVVDCADRDRIDEARQEL 412 (497)
T ss_dssp GGGGGTTCCEEEEEEETTCGGGHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECcchhHHHHHHHHH
Confidence 12357899999999999875 44444343
No 352
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.57 E-value=5.5e-08 Score=89.19 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=54.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCC-----------CCcEEEEEcCCCccCccccCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPE-----------GQKFRLIDTAGIRKRAAIASS 439 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~-----------g~~i~liDTPG~~~~~~~~~~ 439 (484)
..+|+++|.+|+|||||+|+|++.... ....+..+.+.....+.... ...+.+|||||....
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~------ 97 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF------ 97 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH------
Confidence 358999999999999999999986432 11111111111111121111 246899999995221
Q ss_pred CCchhHHHHHHHHHHhhcCcEEEEEEeCccccc
Q 011511 440 GSTTEALSVNRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
.......++.+|++++|+|+..+.+
T Consensus 98 --------~~~~~~~~~~~d~iilV~D~~~~~s 122 (217)
T 2f7s_A 98 --------RSLTTAFFRDAMGFLLMFDLTSQQS 122 (217)
T ss_dssp --------HHHHHHHHTTCCEEEEEEETTCHHH
T ss_pred --------HhHHHHHhcCCCEEEEEEECcCHHH
Confidence 1123356789999999999876543
No 353
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.57 E-value=7.4e-08 Score=87.60 Aligned_cols=88 Identities=18% Similarity=0.211 Sum_probs=57.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEE--EEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFR--LIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~--liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+++... .....+++.+.....+. .++..+. ++||||.......
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~~~------------ 94 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDRL------------ 94 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEE-CC-CEEEEEEEEECCSGGGTTT------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEE-ECCEEEEEEEEECCCchhhHHH------------
Confidence 45899999999999999999997643 22333444443333333 3455555 9999998543211
Q ss_pred HHHHHHhhcCcEEEEEEeCcccccHHh
Q 011511 449 NRAFRAIRRSDVVALVIEAMACITEQA 475 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~~~d 475 (484)
....++.+|++++|+|+.++-+-++
T Consensus 95 --~~~~~~~~d~~i~v~d~~~~~s~~~ 119 (204)
T 4gzl_A 95 --RPLSYPQTDVFLICFSLVSPASFEN 119 (204)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred --HHHHhccCCEEEEEEECCCHHHHHH
Confidence 1124678999999999987544443
No 354
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.56 E-value=1.1e-07 Score=82.57 Aligned_cols=82 Identities=21% Similarity=0.225 Sum_probs=52.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.|++..... ....++.......+.. ++ ..+.++||||..... .
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----------~---- 66 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS----------A---- 66 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC----------H----
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEE-CCEEEEEEEEECCCchhhh----------H----
Confidence 479999999999999999999875322 2222332222222222 23 346889999964321 0
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 67 ~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 67 MRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp HHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHhhccCCEEEEEEECCCH
Confidence 112346689999999998764
No 355
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.56 E-value=7.9e-08 Score=86.66 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC-CCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~-~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++....... .+ ++.......+... .+..+.+|||||... . .
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~------------~---~ 90 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFIWEY-DP-TLESTYRHQATIDDEVVSMEILDTAGQED------------T---I 90 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCC-CT-TCCEEEEEEEEETTEEEEEEEEECCCCCC------------C---H
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-CC-CCCceEEEEEEECCEEEEEEEEECCCCCc------------c---c
Confidence 458999999999999999999987543221 11 1111111122211 124588999999743 0 1
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+.++
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~ 111 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDR 111 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCH
T ss_pred chhhhhccCCEEEEEEECcCH
Confidence 122346789999999998763
No 356
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.56 E-value=2.1e-08 Score=110.24 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=41.7
Q ss_pred CCchhHHHHHHhhchH-HHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHHHhhc--CCCeEEEEecccC
Q 011511 245 GIPLATREAAVARMPS-MIERQATAAIEESCVIIFLVDGQAGLTAADEEIADWLRKNY--MDKFIILAVNKCE 314 (484)
Q Consensus 245 G~~~~~~~~~v~~~~~-~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~--~~~p~ilV~NK~D 314 (484)
|+........+..++. +..+..++.....+.-++++| +|.+.+|.....++.+.+ .+..++++-+..+
T Consensus 536 gL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD--EPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~ 606 (986)
T 2iw3_A 536 GFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD--EPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606 (986)
T ss_dssp TCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE--STTTTCCHHHHHHHHHHHHHSCSEEEEECSCHH
T ss_pred CCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE--CCccCCCHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4443445556666643 344666666666777788899 899999876544433321 3666777655543
No 357
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.56 E-value=9.1e-08 Score=84.57 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|||||||+|.+++.......+..|... ...+. .++ ..+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~l~i~Dt~G~~~---------------- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQY---KKEML-VDGQTHLVLIREEAGAPD---------------- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEE---EEEEE-ETTEEEEEEEEECSSSCC----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeE---EEEEE-ECCEEEEEEEEECCCCch----------------
Confidence 3589999999999999999999875443222222221 11222 233 3468899999632
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+.++-
T Consensus 67 ---~~~~~~~d~~ilv~D~~~~~ 86 (178)
T 2iwr_A 67 ---AKFSGWADAVIFVFSLEDEN 86 (178)
T ss_dssp ---HHHHHHCSEEEEEEETTCHH
T ss_pred ---hHHHHhCCEEEEEEECcCHH
Confidence 13457899999999987653
No 358
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.56 E-value=9.7e-08 Score=85.99 Aligned_cols=83 Identities=18% Similarity=0.156 Sum_probs=52.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeec-CCCCcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~-~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++...... .+..+.+.. ..... .....+.+|||||.....
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~~l~Dt~G~~~~~-------------- 70 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR---QVISCDKSVCTLQITDTTGSHQFP-------------- 70 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE---EEEEETTEEEEEEEEECCGGGSCH--------------
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee---EEEEECCEEEEEEEEeCCChHHhH--------------
Confidence 45899999999999999999998643211 111121111 11111 112368899999964321
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
......++.+|++++|+|+..+
T Consensus 71 ~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 71 AMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp HHHHHHHHHCSEEEEEEETTCH
T ss_pred HHHHHhhccCCEEEEEEECcCH
Confidence 1112346789999999998764
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.55 E-value=9.4e-08 Score=85.50 Aligned_cols=84 Identities=19% Similarity=0.235 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++.... ....+++.......+. .++. .+.+|||||.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~-------------- 83 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVV-IDGETCLLDILDTAGQEEYS-------------- 83 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEE-ETTEEEEEEEEECCC-------------------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEE-ECCEEEEEEEEECCChHHHH--------------
Confidence 358999999999999999999987532 2233344333222232 2332 48899999964321
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 84 ~~~~~~~~~~d~~i~v~d~~~~~ 106 (190)
T 3con_A 84 AMRDQYMRTGEGFLCVFAINNSK 106 (190)
T ss_dssp ------CTTCSEEEEEEETTCHH
T ss_pred HHHHHhhCcCCEEEEEEECcCHH
Confidence 01123467899999999987643
No 360
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.55 E-value=6.9e-08 Score=86.83 Aligned_cols=85 Identities=22% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+++.... .....|+......... .++. .+.+|||||...... .
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~------ 87 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGEIP--TAYVPTVFENFSHVMK-YKNEEFILHLWDTAGQEEYDR------L------ 87 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC--SSCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGTT------T------
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCC--CccCCeeeeeeEEEEE-ECCEEEEEEEEECCCcHHHHH------H------
Confidence 458999999999999999999987532 2222233222222222 2333 358999999643211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
....++.+|++++|+|+.++-+
T Consensus 88 --~~~~~~~~d~~i~v~d~~~~~s 109 (194)
T 3reg_A 88 --RPLSYADSDVVLLCFAVNNRTS 109 (194)
T ss_dssp --GGGGCTTCSEEEEEEETTCHHH
T ss_pred --hHhhccCCcEEEEEEECCCHHH
Confidence 1124678999999999887543
No 361
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.54 E-value=6.6e-08 Score=86.77 Aligned_cols=84 Identities=23% Similarity=0.188 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeec-CCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVS-PISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALS 447 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~-~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~ 447 (484)
..+|+++|.+|+|||||+|.|++....... +..|.+.... .+.. ++ ..+.+|||||...... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~--~~~~-~~~~~~~~i~Dt~G~~~~~~------~----- 86 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGAR--MVNI-DGKQIKLQIWDTAGQESFRS------I----- 86 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEE--EEEE-TTEEEEEEEECCTTGGGTSC------C-----
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEE--EEEE-CCEEEEEEEEECCCchhhhh------h-----
Confidence 358999999999999999999987543221 2223222221 2221 33 3689999999643211 1
Q ss_pred HHHHHHHhhcCcEEEEEEeCcccc
Q 011511 448 VNRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 448 ~~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+..+-
T Consensus 87 ---~~~~~~~~d~ii~v~d~~~~~ 107 (191)
T 2a5j_A 87 ---TRSYYRGAAGALLVYDITRRE 107 (191)
T ss_dssp ---CHHHHTTCSEEEEEEETTCHH
T ss_pred ---HHHHhccCCEEEEEEECCCHH
Confidence 123467899999999987643
No 362
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.54 E-value=1.3e-07 Score=95.68 Aligned_cols=93 Identities=23% Similarity=0.182 Sum_probs=61.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee--ecCCCCceecccceeeec---------------C--C-----CCcEEEEE
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTG---------------P--E-----GQKFRLID 426 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~~gtt~~~~~~~~~~---------------~--~-----g~~i~liD 426 (484)
..+|+++|+.++|||||+|+|+|..... ....+|.|.+........ . . ...+.+||
T Consensus 10 ~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 89 (410)
T 1kk1_A 10 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID 89 (410)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEE
Confidence 3589999999999999999999753222 122346666543211111 0 0 15789999
Q ss_pred cCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc-cHHhhh
Q 011511 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQADW 477 (484)
Q Consensus 427 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~-~~~d~~ 477 (484)
|||..+ + ...+...+..+|++++|+|+.+.+ ..+...
T Consensus 90 tPGh~~-------------f-~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e 127 (410)
T 1kk1_A 90 APGHEA-------------L-MTTMLAGASLMDGAILVIAANEPCPRPQTRE 127 (410)
T ss_dssp CSSHHH-------------H-HHHHHHCGGGCSEEEEEEETTSCSSCHHHHH
T ss_pred CCChHH-------------H-HHHHHhhhhhCCEEEEEEECCCCCCChhHHH
Confidence 999632 1 234556778899999999999766 444443
No 363
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.53 E-value=1e-07 Score=86.47 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=52.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++.... ....+..+.+.....+.. ++ ..+.+|||||.... .
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~----------~---- 92 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFS-ERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERF----------R---- 92 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-----------CEEEEEEEE-TTEEEEEEEECCTTCGGG----------H----
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCC-CCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhH----------H----
Confidence 358999999999999999999986532 112222222222222222 33 37899999996321 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
......++.+|++++|+|+.++
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~ 114 (201)
T 2hup_A 93 TITQSYYRSANGAILAYDITKR 114 (201)
T ss_dssp HHHHHHHTTCSEEEEEEETTBH
T ss_pred HHHHHHHhhCCEEEEEEECCCH
Confidence 1123457899999999998764
No 364
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.52 E-value=1.3e-07 Score=85.31 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|||||||+|.+.+.... ....++++.+.....+. .++. .+.+|||||.... ...+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~g~~~~----------~~~~~ 90 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGGLQGD-SAHEPENPEDTYERRIM-VDKEEVTLVVYDIWEQGDA----------GGWLR 90 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCCEECC-GGGTTTSCTTEEEEEEE-ETTEEEEEEEECCCCCSGG----------GHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhccCC-ccCCCCcccceEEEEEE-ECCEEEEEEEEecCCCccc----------hhhhH
Confidence 358999999999999999999874322 23344555443333333 2343 4678899997431 11111
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
. ..++.+|++++|+|+.++
T Consensus 91 ~---~~~~~~d~~ilv~d~~~~ 109 (195)
T 3cbq_A 91 D---HCLQTGDAFLIVFSVTDR 109 (195)
T ss_dssp H---HHHHHCSEEEEEEETTCH
T ss_pred H---HhhccCCEEEEEEECCCH
Confidence 1 245789999999998763
No 365
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.52 E-value=1.4e-07 Score=95.29 Aligned_cols=93 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCCC--------------Cceecccceeee----cCCCCcEEEEEcCCCc
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS--------------GTTRDAIDTEFT----GPEGQKFRLIDTAGIR 431 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~--------------gtt~~~~~~~~~----~~~g~~i~liDTPG~~ 431 (484)
...+|+++|.+|+|||||+|+|++.......... +.+.+....... ......+.+|||||..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 3468999999999999999999984322111001 111110000000 0112578999999963
Q ss_pred cCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc-cHHhh
Q 011511 432 KRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQAD 476 (484)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~-~~~d~ 476 (484)
+. ...+...++.+|++++|+|+.... ..+.+
T Consensus 87 ~~--------------~~~~~~~~~~~D~~ilVvda~~~~~~~qt~ 118 (403)
T 3sjy_A 87 VL--------------MATMLSGAALMDGAILVVAANEPFPQPQTR 118 (403)
T ss_dssp GG--------------HHHHHHHHTTCSEEEEEEETTSCSSCHHHH
T ss_pred HH--------------HHHHHHHHhhCCEEEEEEECCCCCCcHHHH
Confidence 21 233556678999999999999876 44443
No 366
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.52 E-value=7.9e-08 Score=85.17 Aligned_cols=84 Identities=21% Similarity=0.231 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+.+.... ....+|+.+.....+. .++. .+.++||||...... ..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~----- 73 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQEDYNR------LR----- 73 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC--------CEEECCCC-CTTTT------TG-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEE-ECCEEEEEEEEECCCChhhhh------hH-----
Confidence 468999999999999999999986522 2222333322222222 2333 355999999754321 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+..+-
T Consensus 74 ---~~~~~~~d~~i~v~d~~~~~ 93 (182)
T 3bwd_D 74 ---PLSYRGADVFILAFSLISKA 93 (182)
T ss_dssp ---GGGGTTCSEEEEEEETTCHH
T ss_pred ---HhhccCCCEEEEEEECCCHH
Confidence 12467899999999987643
No 367
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.52 E-value=6.5e-08 Score=98.73 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCc-cee-------------e----------------cCCCCceecccceeeecCCCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGED-RTI-------------V----------------SPISGTTRDAIDTEFTGPEGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~-~~~-------------~----------------~~~~gtt~~~~~~~~~~~~g~ 420 (484)
..+|+++|..|+|||||+|+|++.. .+. . ....|+|++.....+. ..+.
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~-~~~~ 84 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFE-TKKY 84 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEE-CSSC
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEe-cCCe
Confidence 3589999999999999999998641 110 0 0135778776655554 3567
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.+.+|||||..+. ...+...++.+|++++|+|+.+.
T Consensus 85 ~~~iiDtpG~~~f--------------~~~~~~~~~~aD~~ilVvDa~~g 120 (435)
T 1jny_A 85 FFTIIDAPGHRDF--------------VKNMITGASQADAAILVVSAKKG 120 (435)
T ss_dssp EEEECCCSSSTTH--------------HHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEEEEECCCcHHH--------------HHHHHhhhhhcCEEEEEEECCCC
Confidence 8999999997542 12244567899999999999875
No 368
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.51 E-value=6.4e-08 Score=87.69 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=50.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++..... ...+..+.+.....+.. ++ ..+.+|||||...... .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~------~------ 90 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRS------V------ 90 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSC------C------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHH------H------
Confidence 3589999999999999999999865332 22232222222222222 33 4789999999643210 1
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
....++.+|++++|+|+.++-
T Consensus 91 --~~~~~~~~d~~i~v~d~~~~~ 111 (200)
T 2o52_A 91 --TRSYYRGAAGALLVYDITSRE 111 (200)
T ss_dssp --CHHHHTTCSEEEEEEETTCHH
T ss_pred --HHHHhccCCEEEEEEECcCHH
Confidence 123467899999999987643
No 369
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.50 E-value=8e-08 Score=100.27 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=38.0
Q ss_pred HHHhhch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH----HHHHHHhhcCCCeEEEEecccC
Q 011511 253 AAVARMP-SMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 253 ~~v~~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~----~~~~l~~~~~~~p~ilV~NK~D 314 (484)
..+..++ .+.++.+++.....+.-++++| +|.+.+|.. +.+++.+...+..+++|-+..+
T Consensus 134 ~~~~~LSgGe~Qrv~iA~aL~~~p~illlD--EPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~ 198 (538)
T 3ozx_A 134 KDANILSGGGLQRLLVAASLLREADVYIFD--QPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEE--STTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHH
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEE--CCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChH
Confidence 3445553 3345666666666777788899 788888875 3444544333667777766654
No 370
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.50 E-value=1.2e-07 Score=95.59 Aligned_cols=94 Identities=30% Similarity=0.353 Sum_probs=64.3
Q ss_pred hccCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHH
Q 011511 367 EENRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (484)
Q Consensus 367 ~~~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~ 446 (484)
.......|+|+|.||+|||||+|+|.+... .+...+.+|.......+...+...+.++||||+.+..... ....
T Consensus 153 elk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~---~~L~-- 226 (416)
T 1udx_A 153 ELMLIADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEG---KGLG-- 226 (416)
T ss_dssp EECCSCSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGS---CCSC--
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhh---hhhh--
Confidence 344556899999999999999999999753 4566677776654444443334789999999986532110 0011
Q ss_pred HHHHHHHHhhcCcEEEEEEeCc
Q 011511 447 SVNRAFRAIRRSDVVALVIEAM 468 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~ 468 (484)
...++....++++++|+|+.
T Consensus 227 --~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 227 --LEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp --HHHHHHHTSSSEEEEEEETT
T ss_pred --HHHHHHHHHHHhhhEEeCCc
Confidence 11234567899999999985
No 371
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=1.3e-07 Score=84.91 Aligned_cols=83 Identities=20% Similarity=0.190 Sum_probs=55.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++... . .....|+.+.....+. .++ ..+.+|||||...... ..
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~~-~-~~~~~t~~~~~~~~~~-~~~~~~~~~i~D~~G~~~~~~------~~----- 83 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDAF-P-EEYVPTVFDHYAVSVT-VGGKQYLLGLYDTAGQEDYDR------LR----- 83 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSC-C-CSCCCSSCCCEEEEEE-SSSCEEEEEEECCCCSSSSTT------TG-----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-C-CCCCCcccceeEEEEE-ECCEEEEEEEEECCCCcchhH------HH-----
Confidence 35899999999999999999998742 1 2223344333322333 233 3578899999754321 11
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 84 ---~~~~~~~d~~i~v~d~~~~ 102 (194)
T 2atx_A 84 ---PLSYPMTDVFLICFSVVNP 102 (194)
T ss_dssp ---GGGCTTCSEEEEEEETTCH
T ss_pred ---HHhcCCCCEEEEEEECCCH
Confidence 1236789999999998765
No 372
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.50 E-value=1.1e-07 Score=84.42 Aligned_cols=84 Identities=19% Similarity=0.203 Sum_probs=53.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|++++.... .....++.+....... .++. .+.+|||||...... ..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~----- 70 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYDR------LR----- 70 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCC--SSCCCCSCCEEEEEEE-ETTEEEEEEEECCCCSGGGTT------TG-----
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCC--CCcCCcccceeEEEEE-ECCEEEEEEEEECCCCHhHHH------HH-----
Confidence 358999999999999999999976432 1222232222222222 2333 456999999854311 01
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+..+-
T Consensus 71 ---~~~~~~~d~~i~v~d~~~~~ 90 (186)
T 1mh1_A 71 ---PLSYPQTDVSLICFSLVSPA 90 (186)
T ss_dssp ---GGGCTTCSEEEEEEETTCHH
T ss_pred ---HHhccCCcEEEEEEECCChh
Confidence 12367899999999987653
No 373
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.50 E-value=1.7e-07 Score=92.06 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=57.4
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNR 450 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~ 450 (484)
..+|+++|.+|+|||||+|.|++.......+ |+......+. ..+..+.+|||||-.... ..
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~p----T~~~~~~~~~-~~~~~l~i~Dt~G~~~~~------~~-------- 225 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTTIP----TIGFNVETVE-YKNISFTVWDVGGQDKIR------PL-------- 225 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEEEE----ETTEEEEEEE-ETTEEEEEEECC-----C------CS--------
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCccc----ccceEEEEEe-cCcEEEEEEECCCCHhHH------HH--------
Confidence 3589999999999999999999887544332 3332222232 356789999999953321 11
Q ss_pred HHHHhhcCcEEEEEEeCcc--cccHHhhhhh
Q 011511 451 AFRAIRRSDVVALVIEAMA--CITEQADWRD 479 (484)
Q Consensus 451 ~~~~~~~~d~~l~V~~~~~--~~~~~d~~~~ 479 (484)
....++.+|++++|+|+.+ .|..-..++.
T Consensus 226 ~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~ 256 (329)
T 3o47_A 226 WRHYFQNTQGLIFVVDSNDRERVNEAREELM 256 (329)
T ss_dssp HHHHHTTEEEEEEEEETTCSSSHHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCchHHHHHHHHHHH
Confidence 1234678999999999954 4444444443
No 374
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.49 E-value=7.1e-08 Score=94.91 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=22.9
Q ss_pred ccCCCEEEEEcCCCCCchhHHHhhhc
Q 011511 368 ENRIPAIAIVGRPNVGKSSILNALVG 393 (484)
Q Consensus 368 ~~~~~~i~lvG~~g~GKSTLiN~Llg 393 (484)
...+..++++|+||+|||||+|.|+|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999984
No 375
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.49 E-value=2.7e-08 Score=88.47 Aligned_cols=84 Identities=21% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+.+... .....++++.+.....+.. ++ ..+.+|||||.......
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~------------ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTI------------ 73 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC---------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhh------------
Confidence 35899999999999999999997542 2222233333332222322 33 46899999997432110
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|+..+
T Consensus 74 --~~~~~~~~d~~i~v~d~~~~ 93 (183)
T 2fu5_C 74 --TTAYYRGAMGIMLVYDITNE 93 (183)
T ss_dssp --CCTTTTTCSEEEEEEETTCH
T ss_pred --HHHHHhcCCEEEEEEECcCH
Confidence 11246789999999998764
No 376
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.48 E-value=2.1e-07 Score=92.42 Aligned_cols=110 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCC--------CCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCC
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPI--------SGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGS 441 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~--------~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~ 441 (484)
.+|+++|.+|+|||||+|+|++...+..+.. ++.+.......+. ..+. .+.||||||+.+.......-.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~-~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIE-ERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC-----CEEEEEEEEC--------------C
T ss_pred EEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEee-cCCcccceEEEEeccccccCccHHHHH
Confidence 4789999999999999999998766654332 1222221111111 1232 589999999954321000000
Q ss_pred chhHHH---HHHHHHHhhc----------CcEEEEEEeC-cccccHHhhhhhhhc
Q 011511 442 TTEALS---VNRAFRAIRR----------SDVVALVIEA-MACITEQADWRDHRW 482 (484)
Q Consensus 442 ~~~~~~---~~~~~~~~~~----------~d~~l~V~~~-~~~~~~~d~~~~~~~ 482 (484)
....++ ....++...+ +|+++|+|+. ..++.+.+..+++.+
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l 171 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 171 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh
Confidence 111111 1133333333 3678888875 678888887666544
No 377
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=9.3e-08 Score=87.09 Aligned_cols=82 Identities=18% Similarity=0.244 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.|++...... ..+ ++.......+. .++ ..+.+|||||...... ..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~-t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~------ 90 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFPEV-YVP-TVFENYVADIE-VDGKQVELALWDTAGQEDYDR------LR------ 90 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEE-ETTEEEEEEEEECTTCTTCTT------TG------
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCCCc-CCC-cccceEEEEEE-ECCEEEEEEEEECCCcHHHHH------HH------
Confidence 4899999999999999999998754322 112 22221112222 233 3678999999754321 01
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 91 --~~~~~~~d~~i~v~d~~~~ 109 (207)
T 2fv8_A 91 --PLSYPDTDVILMCFSVDSP 109 (207)
T ss_dssp --GGGCTTCCEEEEEEETTCH
T ss_pred --HhhcCCCCEEEEEEECCCH
Confidence 1235789999999998764
No 378
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.48 E-value=1.3e-07 Score=84.42 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=48.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCc-ceeecCCCCceecccceeeec----CCCCcEEEEEcCCCccCccccCCCCchhHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGED-RTIVSPISGTTRDAIDTEFTG----PEGQKFRLIDTAGIRKRAAIASSGSTTEAL 446 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~-~~~~~~~~gtt~~~~~~~~~~----~~g~~i~liDTPG~~~~~~~~~~~~~~~~~ 446 (484)
.+|+++|.+|||||||+|.|++.. .+.....+....+.....+.. .....+.+|||||...... .
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~---- 72 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYS------T---- 72 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHT------T----
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHH------h----
Confidence 479999999999999999999853 222112222222221111111 1245789999999743210 0
Q ss_pred HHHHHHHHhhcCcEEEEEEeCccc
Q 011511 447 SVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++++|++++|+|+.++
T Consensus 73 ----~~~~~~~~~~~i~v~d~~~~ 92 (184)
T 2zej_A 73 ----HPHFMTQRALYLAVYDLSKG 92 (184)
T ss_dssp ----SHHHHHHSEEEEEEEEGGGC
T ss_pred ----hHHHccCCcEEEEEEeCCcc
Confidence 11235678999999998764
No 379
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.48 E-value=1.1e-07 Score=86.25 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=53.3
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|+|||||+|.+.+..... ...+.++.+.. ..+. .++ ..+.+|||||...... ..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~-~~~~-~~~~~~~l~i~Dt~G~~~~~~------~~------ 90 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYI-ADIE-VDGKQVELALWDTAGQEDYDR------LR------ 90 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCE-EEEE-ETTEEEEEEEECCCCSGGGTT------TG------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEE-EEEE-ECCEEEEEEEEECCCchhHHH------HH------
Confidence 489999999999999999999875422 22233332221 2222 233 3688999999643211 01
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+..+
T Consensus 91 --~~~~~~~d~~i~v~d~~~~ 109 (201)
T 2gco_A 91 --PLSYPDTDVILMCFSIDSP 109 (201)
T ss_dssp --GGGCTTCSEEEEEEETTCH
T ss_pred --HHhcCCCCEEEEEEECCCH
Confidence 1246789999999998764
No 380
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.47 E-value=1.2e-07 Score=99.40 Aligned_cols=62 Identities=32% Similarity=0.472 Sum_probs=44.8
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEe-------CCceeeEeecccccccc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFW-------GEHEFMLVDTGGVLNVS 225 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~i~liDtpG~~~~~ 225 (484)
...+|+|+|.+|+|||||+|+|+|..... ..+++|..+..+...| .+..+.++||||+....
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 35789999999999999999999986432 3444444443333322 45679999999997643
No 381
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.47 E-value=2.2e-07 Score=84.76 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=55.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+++.... .....|+.+.....+. .++. .+.+|||||....... .
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~~------~----- 74 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNKFP--TDYIPTVFDNFSANVA-VDGQIVNLGLWDTAGQEDYSRL------R----- 74 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC--SSCCCSSCCCEEEEEE-CSSCEEEEEEECCCCCCCCCC-------------
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC--ccCCCccceeEEEEEE-ECCEEEEEEEEECCCcHHHHHH------H-----
Confidence 358999999999999999999976431 2223333333332332 2343 6889999998543211 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 75 ---~~~~~~~d~~ilv~d~~~~ 93 (212)
T 2j0v_A 75 ---PLSYRGADIFVLAFSLISK 93 (212)
T ss_dssp ---CGGGTTCSEEEEEEETTCH
T ss_pred ---HhhccCCCEEEEEEECCCH
Confidence 1246789999999998764
No 382
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.46 E-value=2.1e-07 Score=83.25 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|||||||+|.+++.... .....|+.......... ++ -.+.+|||||..... . .
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~------~-~----- 85 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPR------N-C----- 85 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CC------C-T-----
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEE-CCEEEEEEEEECCCCCcch------h-H-----
Confidence 458999999999999999999987522 22223333222122221 22 356789999975321 1 1
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.+|++++|+|+.++
T Consensus 86 ---~~~~~~~~~~ilv~d~~~~ 104 (187)
T 3c5c_A 86 ---ERYLNWAHAFLVVYSVDSR 104 (187)
T ss_dssp ---HHHHTTCSEEEEEEETTCH
T ss_pred ---HHHHhhCCEEEEEEECCCH
Confidence 1246789999999998763
No 383
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.46 E-value=1.6e-07 Score=83.68 Aligned_cols=85 Identities=16% Similarity=0.172 Sum_probs=52.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec-CCCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~-~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|++.... ....+..... ....+.. .....+.+|||||...... ..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~------~~------ 72 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDN------VR------ 72 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEE-EEEEEECSSCEEEEEEEEECCSGGGTT------TG------
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccee-EEEEEEECCEEEEEEEEECCCChhhhh------hH------
Confidence 358999999999999999999986432 1112211111 1112221 1223678999999743211 11
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+.++-
T Consensus 73 --~~~~~~~~~~i~v~d~~~~~ 92 (184)
T 1m7b_A 73 --PLSYPDSDAVLICFDISRPE 92 (184)
T ss_dssp --GGGCTTCSEEEEEEETTCHH
T ss_pred --HhhcCCCcEEEEEEECCCHH
Confidence 12467899999999987643
No 384
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.46 E-value=2e-07 Score=100.31 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-----ee------cC------CCCceecccceeeecCCCCcEEEEEcCCCccC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRT-----IV------SP------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-----~~------~~------~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~ 433 (484)
..+|+++|++|+|||||+|.|+..... .+ .+ ..|.|.......+. +.+..+.+|||||..+.
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGHVDF 90 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSSTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCccch
Confidence 458999999999999999999842110 00 00 23556555444443 35778999999998542
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011511 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
. ..+.+.++.+|++++|+|+..+...+....+.
T Consensus 91 ~--------------~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~ 123 (691)
T 1dar_A 91 T--------------IEVERSMRVLDGAIVVFDSSQGVEPQSETVWR 123 (691)
T ss_dssp H--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH
T ss_pred H--------------HHHHHHHHHCCEEEEEEECCCCcchhhHHHHH
Confidence 1 22345678899999999999998888776654
No 385
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.45 E-value=3.8e-07 Score=86.76 Aligned_cols=109 Identities=17% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeec-------CCCCceecccceeeecCC---CCcEEEEEcCCCccCccccCCCCc
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVS-------PISGTTRDAIDTEFTGPE---GQKFRLIDTAGIRKRAAIASSGST 442 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~-------~~~gtt~~~~~~~~~~~~---g~~i~liDTPG~~~~~~~~~~~~~ 442 (484)
+++++|+||+|||||+|+|+|......+ +.+.+++. ......+-+ ...+.++|+||+............
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~-~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEI-KAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSC-CEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceee-eeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 6899999999999999999996544333 12222211 111111111 136799999998653211110111
Q ss_pred hhHHHHHHHHHHh--------------hcCcEEEEEEeCc-ccccHHhhhhhhhc
Q 011511 443 TEALSVNRAFRAI--------------RRSDVVALVIEAM-ACITEQADWRDHRW 482 (484)
Q Consensus 443 ~~~~~~~~~~~~~--------------~~~d~~l~V~~~~-~~~~~~d~~~~~~~ 482 (484)
...+......... ..+++.++++|-. .++++.|..+++++
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L 137 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHL 137 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHH
Confidence 2222221111111 2258889999844 68999998887654
No 386
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.45 E-value=2.4e-08 Score=90.42 Aligned_cols=85 Identities=25% Similarity=0.265 Sum_probs=53.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|+|++.... ....++++.+.....+.. ++ ..+.+|||||....... ..
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~------~~---- 100 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI------TS---- 100 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBCCCCC-CHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC------SC----
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH------HH----
Confidence 358999999999999999999986432 222233333332222322 33 36889999996543211 11
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
..++.+|++++|+|+.++-
T Consensus 101 ----~~~~~~d~~i~v~d~~~~~ 119 (199)
T 3l0i_B 101 ----SYYRGAHGIIVVYDVTDQE 119 (199)
T ss_dssp ----C--CCCSEEEECC-CCCSH
T ss_pred ----HHhhcCCEEEEEEECCCHH
Confidence 2357899999999987643
No 387
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.45 E-value=2.5e-07 Score=82.62 Aligned_cols=79 Identities=19% Similarity=0.214 Sum_probs=51.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|||||||+|.+++...... ..+ |.......+. .++. .+.+|||||.... .
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~--t~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~----------~---- 81 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP--EGGRFKKEIV-VDGQSYLLLIRDEGGPPEL----------Q---- 81 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT--TCEEEEEEEE-ETTEEEEEEEEECSSSCCH----------H----
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC--CcceEEEEEE-ECCEEEEEEEEECCCChhh----------h----
Confidence 35899999999999999999998653321 111 1111111222 2343 4566999997431 0
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
.++.+|++++|+|+.++-+
T Consensus 82 -----~~~~~~~~i~v~d~~~~~s 100 (184)
T 3ihw_A 82 -----FAAWVDAVVFVFSLEDEIS 100 (184)
T ss_dssp -----HHHHCSEEEEEEETTCHHH
T ss_pred -----eecCCCEEEEEEECcCHHH
Confidence 4567999999999887543
No 388
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.45 E-value=2.6e-07 Score=93.48 Aligned_cols=93 Identities=20% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee--ecCCCCceecccceeeecC--------------C--C------CcEEEEE
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI--VSPISGTTRDAIDTEFTGP--------------E--G------QKFRLID 426 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~--~~~~~gtt~~~~~~~~~~~--------------~--g------~~i~liD 426 (484)
..+|+++|+.++|||||+|+|.|..... ....+|.|.+......... . + ..+.+||
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 4589999999999999999999754222 2223466665422111100 1 1 5789999
Q ss_pred cCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc-cHHhhh
Q 011511 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI-TEQADW 477 (484)
Q Consensus 427 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~-~~~d~~ 477 (484)
|||..+ + ...+.+.+..+|++++|+|+.+++ ..+...
T Consensus 88 tPGh~~-------------f-~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e 125 (408)
T 1s0u_A 88 SPGHET-------------L-MATMLSGASLMDGAILVIAANEPCPQPQTKE 125 (408)
T ss_dssp CSSHHH-------------H-HHHHHTTCSCCSEEEEEEETTSCSSCHHHHH
T ss_pred CCCHHH-------------H-HHHHHHhHhhCCEEEEEEECCCCCCCchhHH
Confidence 999532 1 233445667889999999998765 444443
No 389
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.44 E-value=2.4e-07 Score=91.32 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=53.4
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhc------CcceeecCCCCceec----------------------------------
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVG------EDRTIVSPISGTTRD---------------------------------- 408 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg------~~~~~~~~~~gtt~~---------------------------------- 408 (484)
..+..++++|++|+|||||+|.|++ .++..+...+++|+.
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4467899999999999999999974 444444444443321
Q ss_pred ---ccceeee-cCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 409 ---AIDTEFT-GPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 409 ---~~~~~~~-~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
....... .+.+.++++|||||+.++. .. ..+.+|++++|+|+..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~-------~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE----------TE-------VARMVDCFISLQIAGG 181 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HH-------HHTTCSEEEEEECC--
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH----------HH-------HHHhCCEEEEEEeCCc
Confidence 0000000 1357789999999986421 11 2479999999999853
No 390
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.44 E-value=1.1e-07 Score=92.92 Aligned_cols=119 Identities=12% Similarity=0.092 Sum_probs=74.1
Q ss_pred eeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEE
Q 011511 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (484)
Q Consensus 200 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilV 279 (484)
......+.+++..+.+|||+|...++ .....++..++.+|+|
T Consensus 150 Gi~~~~~~~~~v~l~iwDtaGQe~~R--------------------------------------~~w~~yy~~a~~iIfV 191 (340)
T 4fid_A 150 GIHEYDFVVKDIPFHLIDVGGQRSER--------------------------------------KXWVSFFSDVDCAIFV 191 (340)
T ss_dssp SCEEEEEESSSCEEEEEECCSCHHHH--------------------------------------HHHHTTSCSCSEEEEE
T ss_pred eeEEEEEEeeeeeeccccCCCccccc--------------------------------------ccHHHHhccCCEEEEE
Confidence 33445566677889999999986533 2334566889999999
Q ss_pred eeCCC-------CCC-cccHHHHHHHHh-----hcCCCeEEEEecccCCCchhh------------------hhhHHHHh
Q 011511 280 VDGQA-------GLT-AADEEIADWLRK-----NYMDKFIILAVNKCESPRKGI------------------MQVSEFWS 328 (484)
Q Consensus 280 vD~~~-------~~~-~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~~~------------------~~~~~~~~ 328 (484)
+|.+. ... ..-.+...++.. .+.+.|++|++||+|+..... .....+..
T Consensus 192 ~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~ 271 (340)
T 4fid_A 192 TSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQ 271 (340)
T ss_dssp EEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHH
T ss_pred EECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHH
Confidence 99862 111 111122222222 235789999999999764321 01111100
Q ss_pred ----------------------------cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 329 ----------------------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 329 ----------------------------~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+.++.+||+++.++..++..+.+.+-
T Consensus 272 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~~~Il 327 (340)
T 4fid_A 272 QLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAVDVIM 327 (340)
T ss_dssp HHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred HhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHHHHHH
Confidence 1234678999999999999988877654
No 391
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.44 E-value=1.5e-07 Score=86.27 Aligned_cols=83 Identities=17% Similarity=0.185 Sum_probs=44.3
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++..... ....++.......+. .++. .+.+|||||......
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~l~l~Dt~G~~~~~~------------- 97 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQ-VKGKPVHLHIWDTAGQDDYDR------------- 97 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEE-ETTEEEEEEEEEC---------------------
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEE-ECCEEEEEEEEECCCchhhhH-------------
Confidence 3589999999999999999999865322 112222222222222 2333 688999999643210
Q ss_pred HHHHHHhhcCcEEEEEEeCccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
.....++.+|++++|+|+..+
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~ 118 (214)
T 2j1l_A 98 -LRPLFYPDASVLLLCFDVTSP 118 (214)
T ss_dssp --------CEEEEEEEEETTCH
T ss_pred -HHHHHhccCCEEEEEEECcCH
Confidence 011246789999999998764
No 392
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.43 E-value=3.5e-07 Score=83.78 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC-CCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~-~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|||||||+|.|++..... ...+ |+.......+... ....+.+|||||...... ..
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~------ 92 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYPE-TYVP-TVFENYTACLETEEQRVELSLWDTSGSPYYDN------VR------ 92 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCCS-SCCC-CSEEEEEEEEEC--CEEEEEEEEECCSGGGTT------TG------
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCC-CcCC-eeeeeEEEEEEECCEEEEEEEEECCCCHhHHH------HH------
Confidence 4589999999999999999999875322 1122 2222112222221 123578999999754211 11
Q ss_pred HHHHHhhcCcEEEEEEeCccccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
...++.+|++++|+|+.++-+
T Consensus 93 --~~~~~~~d~~i~v~d~~~~~s 113 (214)
T 3q3j_B 93 --PLCYSDSDAVLLCFDISRPET 113 (214)
T ss_dssp --GGGCTTCSEEEEEEETTCTHH
T ss_pred --HHHcCCCeEEEEEEECcCHHH
Confidence 123678999999999876433
No 393
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.43 E-value=2.3e-07 Score=97.73 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=55.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceee--------c------CCCCceecccceeeecC--CC--CcEEEEEcCCCccC
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIV--------S------PISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRKR 433 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~--------~------~~~gtt~~~~~~~~~~~--~g--~~i~liDTPG~~~~ 433 (484)
.+|+++|+.|+|||||+++|+....... . ...|.|.......+.+. +| ..+.+|||||..++
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 4899999999999999999986321110 0 12356665544444322 23 46889999998543
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
. ..+.+.++.+|++++|+|+.++...+....+
T Consensus 85 ~--------------~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~ 116 (599)
T 3cb4_D 85 S--------------YEVSRSLAACEGALLVVDAGQGVEAQTLANC 116 (599)
T ss_dssp H--------------HHHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred H--------------HHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 1 1244567889999999999988877765544
No 394
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.43 E-value=2.5e-07 Score=97.36 Aligned_cols=94 Identities=23% Similarity=0.225 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceee--------c------CCCCceecccceeeecC--CC--CcEEEEEcCCCccC
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIV--------S------PISGTTRDAIDTEFTGP--EG--QKFRLIDTAGIRKR 433 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~--------~------~~~gtt~~~~~~~~~~~--~g--~~i~liDTPG~~~~ 433 (484)
.+++++|+.|+|||||+++|+....... . ...|.|.......+.+. +| ..+.+|||||..++
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 5899999999999999999986321110 0 11355655444443321 33 36789999998643
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
. ..+.+.++.+|++++|+|+.++...+....+
T Consensus 87 ~--------------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~ 118 (600)
T 2ywe_A 87 S--------------YEVSRALAACEGALLLIDASQGIEAQTVANF 118 (600)
T ss_dssp H--------------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred H--------------HHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 1 1234567899999999999998887766544
No 395
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.42 E-value=1.6e-07 Score=96.72 Aligned_cols=85 Identities=21% Similarity=0.290 Sum_probs=49.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee------------------------ec------CCCCceecccceeeecCCCCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI------------------------VS------PISGTTRDAIDTEFTGPEGQK 421 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~------------------------~~------~~~gtt~~~~~~~~~~~~g~~ 421 (484)
.+|+++|+.|+|||||+|+|+...... +. ...|.|.+.....+. .++..
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~-~~~~~ 122 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFE-TEHRR 122 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEE-CSSEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEe-cCCeE
Confidence 589999999999999999997521100 00 124677776554454 35788
Q ss_pred EEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc
Q 011511 422 FRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 422 i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
+.+|||||..+.. ..+...++.+|++++|+|+..+.
T Consensus 123 ~~iiDtPGh~~f~--------------~~~~~~~~~aD~~ilVvDa~~g~ 158 (467)
T 1r5b_A 123 FSLLDAPGHKGYV--------------TNMINGASQADIGVLVISARRGE 158 (467)
T ss_dssp EEECCCCC-------------------------TTSCSEEEEEEECSTTH
T ss_pred EEEEECCCcHHHH--------------HHHHhhcccCCEEEEEEeCCcCc
Confidence 9999999975431 22345578999999999998763
No 396
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.42 E-value=3.1e-07 Score=83.59 Aligned_cols=85 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecC-CCCcEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGP-EGQKFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~-~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
..+|+++|.+|+|||||+|.|.+.... ....+..... ....+... ....+.+|||||...... ..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~------ 93 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFEN-YTASFEIDTQRIELSLWDTSGSPYYDN------VR------ 93 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEE-EEEEEESSSSEEEEEEEEECCSGGGTT------TG------
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCcccee-EEEEEEECCEEEEEEEEeCCCcHhhhH------HH------
Confidence 358999999999999999999986532 1112221111 11122211 124688999999743211 11
Q ss_pred HHHHHhhcCcEEEEEEeCcccc
Q 011511 450 RAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
...++.+|++++|+|+..+-
T Consensus 94 --~~~~~~~d~~ilv~D~~~~~ 113 (205)
T 1gwn_A 94 --PLSYPDSDAVLICFDISRPE 113 (205)
T ss_dssp --GGGCTTCSEEEEEEETTCHH
T ss_pred --HhhccCCCEEEEEEECCCHH
Confidence 12467899999999987643
No 397
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.9e-07 Score=86.13 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=52.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCC--CcEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEG--QKFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g--~~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.|++...... ..+..+.+.....+. .++ ..+.+|||||...... ..
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~-~~~~~~~~~i~Dt~G~~~~~~------~~----- 79 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMD-SKSTIGVEFATRTLE-IEGKRIKAQIWDTAGQERYRA------IT----- 79 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCCCCC-------CCSEEEEEEE-ETTEEEEEEEECCTTTTTTTC------CC-----
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCCCCCC-CCCcccceeEEEEEE-ECCEEEEEEEEECCCccchhh------hH-----
Confidence 35899999999999999999998754322 122222222112222 233 3689999999754321 11
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
...++.+|++++|+|+..+.+
T Consensus 80 ---~~~~~~~d~vilV~D~~~~~s 100 (223)
T 3cpj_B 80 ---SAYYRGAVGALIVYDISKSSS 100 (223)
T ss_dssp ---GGGTTTCCEEEEEEC-CCHHH
T ss_pred ---HHHhccCCEEEEEEeCCCHHH
Confidence 123578999999999876543
No 398
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.41 E-value=5.4e-07 Score=90.55 Aligned_cols=115 Identities=11% Similarity=0.120 Sum_probs=61.0
Q ss_pred ccCCCE--EEEEcCCCCCchhHHHhhhcCccee---ecCCCCceecccceeeecCC-CCcEEEEEcCCCccCccccCCCC
Q 011511 368 ENRIPA--IAIVGRPNVGKSSILNALVGEDRTI---VSPISGTTRDAIDTEFTGPE-GQKFRLIDTAGIRKRAAIASSGS 441 (484)
Q Consensus 368 ~~~~~~--i~lvG~~g~GKSTLiN~Llg~~~~~---~~~~~gtt~~~~~~~~~~~~-g~~i~liDTPG~~~~~~~~~~~~ 441 (484)
...+.. ++|+|+||+|||||+|+|+|..... ....++.++..+........ ...+.++||||+.........-.
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~ 116 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYK 116 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSH
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhh
Confidence 345556 9999999999999999999974321 11234555543332222111 12679999999964310000000
Q ss_pred chhHHH---HHHHHHHh----------hcC--c-EEEEEEeCcccccHHhhhhhhhc
Q 011511 442 TTEALS---VNRAFRAI----------RRS--D-VVALVIEAMACITEQADWRDHRW 482 (484)
Q Consensus 442 ~~~~~~---~~~~~~~~----------~~~--d-~~l~V~~~~~~~~~~d~~~~~~~ 482 (484)
.+..++ ...++... ..+ | |++||+|+..+++..|..+++.+
T Consensus 117 ~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L 173 (427)
T 2qag_B 117 PIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKL 173 (427)
T ss_dssp HHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 011111 11112111 122 3 58889999889999999888765
No 399
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.41 E-value=4.3e-07 Score=100.60 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=63.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCc------c---e------eecCCCCceecccceeeecCCCCcEEEEEcCCCccCcc
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGED------R---T------IVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAA 435 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~------~---~------~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~ 435 (484)
..+|+++|++|+|||||+|+|++.. . + ......|.|.+.....+. ..+..+.+|||||..+.
T Consensus 296 ~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHedF-- 372 (1289)
T 3avx_A 296 HVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHADY-- 372 (1289)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHHHH--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChHHH--
Confidence 4589999999999999999998741 0 0 011235778777655554 35688999999997431
Q ss_pred ccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhh
Q 011511 436 IASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRD 479 (484)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~ 479 (484)
...+...++.+|++++|+|+..+...+.+..+
T Consensus 373 ------------~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL 404 (1289)
T 3avx_A 373 ------------VKNMITGAAQMDGAILVVAATDGPMPQTREHI 404 (1289)
T ss_dssp ------------HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHH
T ss_pred ------------HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHH
Confidence 23455678899999999999987766665443
No 400
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.39 E-value=3e-07 Score=101.09 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCC---------------CceecccceeeecC---------------CCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPIS---------------GTTRDAIDTEFTGP---------------EGQ 420 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~---------------gtt~~~~~~~~~~~---------------~g~ 420 (484)
..+|+++|+.|+|||||+|+|++.........+ |.|.......+.+. .+.
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 98 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF 98 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCc
Confidence 358999999999999999999975433222222 33333222222211 145
Q ss_pred cEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011511 421 KFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 421 ~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
.+.||||||..++. ..+.+.++.+|++++|+|+..+.+.+...++.
T Consensus 99 ~i~liDTPG~~df~--------------~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~ 144 (842)
T 1n0u_A 99 LINLIDSPGHVDFS--------------SEVTAALRVTDGALVVVDTIEGVCVQTETVLR 144 (842)
T ss_dssp EEEEECCCCCCSSC--------------HHHHHHHHTCSEEEEEEETTTBSCHHHHHHHH
T ss_pred eEEEEECcCchhhH--------------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH
Confidence 78999999987642 12345678999999999999999888876653
No 401
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.39 E-value=4.2e-07 Score=95.83 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=62.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeec-----------------CCCCcEEEEEcCCCccC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTG-----------------PEGQKFRLIDTAGIRKR 433 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~-----------------~~g~~i~liDTPG~~~~ 433 (484)
.++|+++|++|+|||||+|+|++...... .-.|.|++.-...... .....+.+|||||..++
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~-e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR-EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccc-cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46899999999999999999998643221 1114443321111100 11235899999998654
Q ss_pred ccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 434 AAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
.... .+.++.+|++++|+|+.+++..+....++.
T Consensus 84 ~~~~--------------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~ 117 (594)
T 1g7s_A 84 TTLR--------------KRGGALADLAILIVDINEGFKPQTQEALNI 117 (594)
T ss_dssp TTSB--------------CSSSBSCSEEEEEEETTTCCCHHHHHHHHH
T ss_pred HHHH--------------HHHHhhCCEEEEEEECCCCccHhHHHHHHH
Confidence 3211 023578999999999999888887766643
No 402
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.39 E-value=2.8e-06 Score=85.82 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=82.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHh------CCcceeeecCCCce-----------e-ee-eEE----------------EEE
Q 011511 163 LPRVAIVGRPNVGKSALFNRLV------GGNRAIVVDEPGVT-----------R-DR-MYG----------------RSF 207 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~------~~~~~~~~~~~~~t-----------~-~~-~~~----------------~~~ 207 (484)
...|+++|.+|+||||++..|. |..+..+...+... . .. ... ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999987 44333322111100 0 00 000 000
Q ss_pred eCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCCCCC
Q 011511 208 WGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQAGLT 287 (484)
Q Consensus 208 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~~~~ 287 (484)
..+..+.++||||.... ....+.++ ..+.....+|.+++|+|+..+.
T Consensus 180 ~~~~DvVIIDTaGrl~~---d~~lm~el-----------------------------~~i~~~~~pd~vlLVvDA~~gq- 226 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKE---DKALIEEM-----------------------------KQISNVIHPHEVILVIDGTIGQ- 226 (443)
T ss_dssp HTTCSEEEEECCCCSSC---CHHHHHHH-----------------------------HHHHHHHCCSEEEEEEEGGGGG-
T ss_pred hCCCCEEEEECCCcccc---hHHHHHHH-----------------------------HHHHHhhcCceEEEEEeCCCch-
Confidence 13467899999996431 11111111 1112334579999999987542
Q ss_pred cccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchh
Q 011511 288 AADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (484)
Q Consensus 288 ~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L 347 (484)
........+.+. -....+|+||+|...............+.|+.+++. |+++++|
T Consensus 227 -~a~~~a~~f~~~--~~i~gVIlTKlD~~~~gG~~ls~~~~~g~PI~fig~--Ge~vddL 281 (443)
T 3dm5_A 227 -QAYNQALAFKEA--TPIGSIIVTKLDGSAKGGGALSAVAATGAPIKFIGT--GEKIDDI 281 (443)
T ss_dssp -GHHHHHHHHHHS--CTTEEEEEECCSSCSSHHHHHHHHHTTCCCEEEEEC--SSSTTCE
T ss_pred -hHHHHHHHHHhh--CCCeEEEEECCCCcccccHHHHHHHHHCCCEEEEEc--CCChHHh
Confidence 222333334432 345678999999876443222223345677777775 7777765
No 403
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.39 E-value=6.6e-07 Score=96.50 Aligned_cols=96 Identities=20% Similarity=0.155 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCccee-----------ecC------CCCceecccceeeecCCC-------CcEEEE
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTI-----------VSP------ISGTTRDAIDTEFTGPEG-------QKFRLI 425 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~-----------~~~------~~gtt~~~~~~~~~~~~g-------~~i~li 425 (484)
...+|+++|+.|+|||||++.|+...... +.+ ..|.|.......+. +.+ ..+.||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~-~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAF-WSGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEE-ECCccccCCceeEEEE
Confidence 34689999999999999999997532110 000 23455544333333 233 689999
Q ss_pred EcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011511 426 DTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 426 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
||||..++. ..+.+.++.+|++|+|+|+......+...+++
T Consensus 88 DTPG~~df~--------------~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~ 128 (704)
T 2rdo_7 88 DTPGHVDFT--------------IEVERSMRVLDGAVMVYCAVGGVQPQSETVWR 128 (704)
T ss_pred eCCCccchH--------------HHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH
Confidence 999985431 12345678899999999999888777666553
No 404
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=3.2e-07 Score=83.97 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=51.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|||||||+|.+++.....+...+.++.+.....+. .+|. .+.++||+|... .... +.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~-~~~~~~~l~~~Dt~g~~~----------~~~~-l~ 105 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLM-VDGESATIILLDMWENKG----------ENEW-LH 105 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEE-ETTEEEEEEEECCTTTTH----------HHHH-HH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEE-ECCeeeEEEEeecCCCcc----------hhhh-HH
Confidence 58999999999999999999975432222223333332222232 2444 357899999521 1111 11
Q ss_pred HHHHHhhcCcEEEEEEeCcc
Q 011511 450 RAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~ 469 (484)
....+.+|++++|+|+.+
T Consensus 106 --~~~~~~a~~~ilVydvt~ 123 (211)
T 2g3y_A 106 --DHCMQVGDAYLIVYSITD 123 (211)
T ss_dssp --HCCCCCCSEEEEEEETTC
T ss_pred --HHHHhhCCEEEEEEECCC
Confidence 123567899999999876
No 405
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.36 E-value=6.3e-07 Score=93.78 Aligned_cols=97 Identities=21% Similarity=0.279 Sum_probs=70.4
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcce---------------eecC------CCCceecccceeeecCCCCcEEEEEcC
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRT---------------IVSP------ISGTTRDAIDTEFTGPEGQKFRLIDTA 428 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~---------------~~~~------~~gtt~~~~~~~~~~~~g~~i~liDTP 428 (484)
+..+|+|+|+.++|||||.-+|+-.... .+.+ --|.|.......+. |++..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFP-YRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEE-ETTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEE-ECCEEEEEEeCC
Confidence 3458999999999999999999721100 1111 12667666655554 578899999999
Q ss_pred CCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 429 GIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 429 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
|..++. ..+.++++-+|..++|||+..++..|-+.++++
T Consensus 109 GHvDF~--------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~ 147 (548)
T 3vqt_A 109 GHQDFS--------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV 147 (548)
T ss_dssp CGGGCS--------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred CcHHHH--------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHH
Confidence 998763 235577899999999999999999999888754
No 406
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.36 E-value=1.6e-07 Score=84.50 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|||||||+|.+.+.....+...+.++.+.....+. .+|. .+.++||+|.... ...+ .
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~Dt~~~~~~----------~~~~-~ 74 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLM-VDGESATIILLDMWENKGE----------NEWL-H 74 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEE-ETTEEEEEEEECCCCC--------------CTT-G
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEE-ECCeEEEEEEEEeccCcch----------hhhH-H
Confidence 58999999999999999999974332223223333332222232 2444 3568999996321 0000 0
Q ss_pred HHHHHhhcCcEEEEEEeCcc
Q 011511 450 RAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~ 469 (484)
....+.+|++++|+|+.+
T Consensus 75 --~~~~~~~~~~i~v~dv~~ 92 (192)
T 2cjw_A 75 --DHCMQVGDAYLIVYSITD 92 (192)
T ss_dssp --GGHHHHCSEEEEEEETTC
T ss_pred --HhhcccCCEEEEEEECCC
Confidence 113467899999999876
No 407
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.35 E-value=5.4e-07 Score=91.38 Aligned_cols=80 Identities=20% Similarity=0.118 Sum_probs=45.4
Q ss_pred hcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCC-e-EEEEecccCCCchhhhhhHHHHhcCCC-----------------
Q 011511 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDK-F-IILAVNKCESPRKGIMQVSEFWSLGFS----------------- 332 (484)
Q Consensus 272 ~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~-p-~ilV~NK~Dl~~~~~~~~~~~~~~~~~----------------- 332 (484)
.+|.+++|+|+..+. + ....+....... + ..+|+||+|...............+.+
T Consensus 210 ~~d~vllVvda~~g~---~--~~~~~~~~~~~~~~i~gvVlnK~D~~~~~g~~l~~~~~~~~pi~~ig~Ge~~~dl~~f~ 284 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQ---Q--AGIQAKAFKEAVGEIGSIIVTKLDGSAKGGGALSAVAETKAPIKFIGIGEGIDDLEPFD 284 (432)
T ss_dssp CCSEEEEEEEGGGGG---G--HHHHHHHHHTTSCSCEEEEEECSSSCSTTHHHHHHHHHSSCCEEEECCSSSSSSCCBCC
T ss_pred cCcceeEEeeccccH---H--HHHHHHHHhhcccCCeEEEEeCCCCccchHHHHHHHHHHCCCEEEeecCccccccccCC
Confidence 589999999986543 2 222222221234 5 789999999864322111111122222
Q ss_pred -ceeeecccCCC-CchhhHHHHHHhh
Q 011511 333 -PLPISAISGTG-TGELLDLVCSELK 356 (484)
Q Consensus 333 -~i~vSa~~g~g-i~~L~~~i~~~l~ 356 (484)
..++|+..|.| +..|++.+.+.+.
T Consensus 285 ~~~~~s~l~g~gdi~~L~e~~~~~~~ 310 (432)
T 2v3c_C 285 PKKFISRLLGMGDLESLLEKAEDMVD 310 (432)
T ss_dssp HHHHHHHHTCSSCSSTTSSTTTSCSC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 23567778887 7777777655543
No 408
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.35 E-value=1.2e-07 Score=99.24 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=38.2
Q ss_pred HHHhhch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHH----HHHHHHhhc-CCCeEEEEecccC
Q 011511 253 AAVARMP-SMIERQATAAIEESCVIIFLVDGQAGLTAADEE----IADWLRKNY-MDKFIILAVNKCE 314 (484)
Q Consensus 253 ~~v~~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~----~~~~l~~~~-~~~p~ilV~NK~D 314 (484)
..+..++ .+..+..++.....+.-++++| +|.+.+|.. +..++.+.. .+..+++|-+..+
T Consensus 154 ~~~~~LSgGekQRv~iAraL~~~P~lLlLD--EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~ 219 (538)
T 1yqt_A 154 REIQHLSGGELQRVAIAAALLRNATFYFFD--EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEE--STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEE--CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 3455553 3445667777777788888999 899999876 444444321 2567777766544
No 409
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.35 E-value=2.8e-07 Score=87.24 Aligned_cols=58 Identities=38% Similarity=0.588 Sum_probs=39.8
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeeccccccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
.+|+++|.+|+|||||+|+|.+.....++..+++|..... +.. +..+.+|||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~--~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQW--FSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCE--EEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEE--EEe-CCCEEEEECCCcccC
Confidence 7999999999999999999999876677888888877643 222 457999999999753
No 410
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.35 E-value=6.8e-07 Score=94.44 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
--.++|+|++|+|||||++.|.|..
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHhcCC
Confidence 4589999999999999999999864
No 411
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.33 E-value=5.7e-07 Score=81.23 Aligned_cols=84 Identities=21% Similarity=0.286 Sum_probs=51.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceee-cCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIV-SPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~-~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
.+|+++|.+|+|||||+|.|+|...... .+..|.... ...+. .+|. .+.++||||...... ..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~--~~~i~-~~g~~~~~~i~Dt~g~~~~~~------~~----- 71 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA--TRSIQ-VDGKTIKAQIWDTAGQERYRR------IT----- 71 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEE--EEEEE-ETTEEEEEEEEECSSGGGTTC------CC-----
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE--EEEEE-ECCEEEEEEEEECCCchhhhh------hh-----
Confidence 4799999999999999999999753221 122222221 12222 2443 456799999643211 01
Q ss_pred HHHHHHhhcCcEEEEEEeCccccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACIT 472 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~~ 472 (484)
...++.+|++++|+|+....+
T Consensus 72 ---~~~~~~~~~~i~v~d~~~~~s 92 (199)
T 2f9l_A 72 ---SAYYRGAVGALLVYDIAKHLT 92 (199)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHH
T ss_pred ---HHHHhcCCEEEEEEECcCHHH
Confidence 123457889999999876444
No 412
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.68 E-value=6.3e-08 Score=87.92 Aligned_cols=84 Identities=19% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHH
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSV 448 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~ 448 (484)
..+|+++|.+|+|||||+|.+++.... .....++.+.....+. .++. .+.+|||||.....
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~~-------------- 92 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGQEDYD-------------- 92 (204)
Confidence 458999999999999999999975432 2222333333222222 2333 34599999974321
Q ss_pred HHHHHHhhcCcEEEEEEeCcccc
Q 011511 449 NRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 449 ~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
......++.+|++++|+|+..+-
T Consensus 93 ~~~~~~~~~~d~iilv~D~~~~~ 115 (204)
T 3th5_A 93 RLRPLSYPQTDVFLICFSLVSPA 115 (204)
Confidence 11112467899999999987653
No 413
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.32 E-value=8.9e-07 Score=79.48 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=50.6
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcE--EEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKF--RLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i--~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+++++|.+|+|||||+|.|++..... ...+..+.+.....+. .+|..+ .++||||...... ..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~-~~~~t~~~~~~~~~i~-~~g~~~~~~i~Dt~g~~~~~~------~~------ 95 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNL-ESKSTIGVEFATRSIQ-VDGKTIKAQIWDTAGLERYRA------IT------ 95 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCC-SCCCCCSEEEEEEEEE-ETTEEEEEEEEEECSCCSSSC------CC------
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCccceEEEEEEEE-ECCEEEEEEEEECCCCcchhh------hh------
Confidence 589999999999999999999975332 1222222221122222 245443 4699999864321 11
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
...++.++++++|+|+...
T Consensus 96 --~~~~~~~~~~i~v~d~~~~ 114 (191)
T 1oix_A 96 --SAYYRGAVGALLVYDIAKH 114 (191)
T ss_dssp --HHHHTTCCEEEEEEETTCH
T ss_pred --HHHhhcCCEEEEEEECcCH
Confidence 1234667888888887654
No 414
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.32 E-value=2.7e-07 Score=97.59 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHhhch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccHHH----HHHHHhhc-CCCeEEEEecccC
Q 011511 252 EAAVARMP-SMIERQATAAIEESCVIIFLVDGQAGLTAADEEI----ADWLRKNY-MDKFIILAVNKCE 314 (484)
Q Consensus 252 ~~~v~~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~----~~~l~~~~-~~~p~ilV~NK~D 314 (484)
...+..++ .+.++.+++.....+.-++++| +|.+.+|... .+++.+.. .+..+++|-+..+
T Consensus 223 ~~~~~~LSGGekQRvaIAraL~~~P~lLlLD--EPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~ 289 (607)
T 3bk7_A 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFD--EPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA 289 (607)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE--CTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCEEEEE--CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH
Confidence 34455553 4455667777777788888999 8889988763 33443321 2566777665543
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.29 E-value=7.2e-07 Score=88.43 Aligned_cols=81 Identities=26% Similarity=0.400 Sum_probs=51.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhh------cCcceeecCCCCcee------------------------------------
Q 011511 370 RIPAIAIVGRPNVGKSSILNALV------GEDRTIVSPISGTTR------------------------------------ 407 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Ll------g~~~~~~~~~~gtt~------------------------------------ 407 (484)
...+|+++|.+|+|||||+|.|. |.++..+...++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 34589999999999999999996 344443333332222
Q ss_pred ----cccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 408 ----DAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 408 ----~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
+.+ . .....+.+++||||||+... .. ..++.+|++++|+|+..
T Consensus 158 ~~t~d~i-~-~~~~~~~~~iiiDTpGi~~~----------~~-------~~~~~aD~vl~V~d~~~ 204 (355)
T 3p32_A 158 RATRETV-V-LLEAAGFDVILIETVGVGQS----------EV-------AVANMVDTFVLLTLART 204 (355)
T ss_dssp HHHHHHH-H-HHHHTTCCEEEEEECSCSSH----------HH-------HHHTTCSEEEEEEESST
T ss_pred HHHHHHH-H-HHhhCCCCEEEEeCCCCCcH----------HH-------HHHHhCCEEEEEECCCC
Confidence 111 0 00124678999999998531 11 12488999999999753
No 416
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.28 E-value=3e-07 Score=91.07 Aligned_cols=119 Identities=18% Similarity=0.105 Sum_probs=72.4
Q ss_pred eeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEE
Q 011511 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (484)
Q Consensus 200 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilV 279 (484)
......+.+++..+.+|||+|....+..+. .++.+++++|+|
T Consensus 190 Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~--------------------------------------~~f~~~~~iIfv 231 (362)
T 1zcb_A 190 GIHEYDFEIKNVPFKMVDVGGQRSERKRWF--------------------------------------ECFDSVTSILFL 231 (362)
T ss_dssp SEEEEEEEETTEEEEEEEECC-------CT--------------------------------------TSCTTCCEEEEE
T ss_pred ceEEEEeeeCCeEEEEEeccchhhhhhhHH--------------------------------------HHhCCCCEEEEE
Confidence 334455667788899999999976655443 334678999999
Q ss_pred eeCCCCC--------CcccHHHHHHH---Hh--hcCCCeEEEEecccCCCchh-------------------hhhhHHHH
Q 011511 280 VDGQAGL--------TAADEEIADWL---RK--NYMDKFIILAVNKCESPRKG-------------------IMQVSEFW 327 (484)
Q Consensus 280 vD~~~~~--------~~~~~~~~~~l---~~--~~~~~p~ilV~NK~Dl~~~~-------------------~~~~~~~~ 327 (484)
+|.+... ...-.+...++ .. .+.+.|++||+||+|+.... ......+.
T Consensus 232 ~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~ 311 (362)
T 1zcb_A 232 VSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFL 311 (362)
T ss_dssp EETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHH
T ss_pred EECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHH
Confidence 9987621 11111222222 22 23578999999999986321 11111221
Q ss_pred ------------hcCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 328 ------------SLGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 328 ------------~~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
...+.++++||+++.|+.+++..+.+.+.
T Consensus 312 ~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 312 VECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp HHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 12345678999999999999998887654
No 417
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.28 E-value=1.3e-06 Score=93.79 Aligned_cols=97 Identities=20% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcce--eecC---------------CCCceecccceeeecCCCCcEEEEEcCCCcc
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRT--IVSP---------------ISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~--~~~~---------------~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~ 432 (484)
...+|+++|++|+|||||++.|++.... ..+. ..|.|.......+. +.+..+.+|||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccc
Confidence 4568999999999999999999953221 0010 01334333333332 3567889999999753
Q ss_pred CccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 433 RAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
. ...+...++.+|++++|+|+..++..+...++++
T Consensus 87 f--------------~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 87 F--------------VGEIRGALEAADAALVAVSAEAGVQVGTERAWTV 121 (665)
T ss_dssp G--------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred h--------------HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHH
Confidence 2 1234566789999999999999988887766643
No 418
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.28 E-value=7.7e-07 Score=86.98 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=60.0
Q ss_pred cCCCEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEE--EEEcCCCccCccccCCCCchhHH
Q 011511 369 NRIPAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFR--LIDTAGIRKRAAIASSGSTTEAL 446 (484)
Q Consensus 369 ~~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~--liDTPG~~~~~~~~~~~~~~~~~ 446 (484)
....+|+++|.+|+|||||+|.+.+... .....+|+.+.....+. .++..+. +|||||...... .
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~------~---- 219 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVM-VDGKPVNLGLWDTAGLEDYDR------L---- 219 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEE-ETTEEEEEEEEEECCCGGGTT------T----
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEE-ECCEEEEEEEEeCCCchhhhH------H----
Confidence 3446899999999999999999997643 23344555554443333 2455444 999999754321 1
Q ss_pred HHHHHHHHhhcCcEEEEEEeCcccccHHh
Q 011511 447 SVNRAFRAIRRSDVVALVIEAMACITEQA 475 (484)
Q Consensus 447 ~~~~~~~~~~~~d~~l~V~~~~~~~~~~d 475 (484)
....++.+|++++|+|+..+.+-++
T Consensus 220 ----~~~~~~~~d~~i~v~d~~~~~s~~~ 244 (332)
T 2wkq_A 220 ----RPLSYPQTDVFLICFSLVSPASFHH 244 (332)
T ss_dssp ----GGGGCTTCSEEEEEEETTCHHHHHH
T ss_pred ----HHHhccCCCEEEEEEeCCCHHHHHH
Confidence 1123678999999999987554433
No 419
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.27 E-value=3.1e-06 Score=87.15 Aligned_cols=93 Identities=19% Similarity=0.213 Sum_probs=56.6
Q ss_pred CCEEEEEcCCCCCchhHHHhhh------cCcceeecCCC---Cc--------eecccceee---------------e--c
Q 011511 371 IPAIAIVGRPNVGKSSILNALV------GEDRTIVSPIS---GT--------TRDAIDTEF---------------T--G 416 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll------g~~~~~~~~~~---gt--------t~~~~~~~~---------------~--~ 416 (484)
...|+++|.+|+||||++|.|+ |.++..+...+ +. ++..+.+.. . .
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999 77766554422 11 000011000 0 0
Q ss_pred CCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc
Q 011511 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
+.+..++||||||..... .....+ +..... +..+|.+++|+|+....
T Consensus 181 ~~~~DvvIIDTpG~~~~~------~~l~~e-l~~~~~-~i~pd~vllVvDa~~g~ 227 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQE------DSLFEE-MLQVAN-AIQPDNIVYVMDASIGQ 227 (504)
T ss_dssp HTTCCEEEEEECCCCTTC------HHHHHH-HHHHHH-HHCCSEEEEEEETTCCT
T ss_pred HCCCcEEEEeCCCCcccc------hhHHHH-HHHHHh-hhcCceEEEEEeccccc
Confidence 156789999999986421 111111 222222 33899999999997654
No 420
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.25 E-value=8e-07 Score=95.69 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=24.1
Q ss_pred hhhhccCCCEEEEEcCCCCCchhHHHhhh
Q 011511 364 LVEEENRIPAIAIVGRPNVGKSSILNALV 392 (484)
Q Consensus 364 ~~~~~~~~~~i~lvG~~g~GKSTLiN~Ll 392 (484)
.......+..++|+|+||+|||||+|.|+
T Consensus 341 vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 341 VSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred ceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 34455667899999999999999999875
No 421
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.23 E-value=4.3e-06 Score=84.35 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=43.3
Q ss_pred hcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchh
Q 011511 272 ESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGEL 347 (484)
Q Consensus 272 ~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L 347 (484)
..+.+++|+|+..+ .........+.+. -.+..+|+||+|...............+.|+.+++. |+++++|
T Consensus 211 ~pd~vlLVlDa~~g--q~a~~~a~~f~~~--~~~~gVIlTKlD~~a~~G~als~~~~~g~Pi~fig~--Ge~v~dL 280 (433)
T 3kl4_A 211 KPDDVILVIDASIG--QKAYDLASRFHQA--SPIGSVIITKMDGTAKGGGALSAVVATGATIKFIGT--GEKIDEL 280 (433)
T ss_dssp CCSEEEEEEEGGGG--GGGHHHHHHHHHH--CSSEEEEEECGGGCSCHHHHHHHHHHHTCEEEEEEC--CSSSSCE
T ss_pred CCcceEEEEeCccc--hHHHHHHHHHhcc--cCCcEEEEecccccccchHHHHHHHHHCCCEEEEEC--CCChHhC
Confidence 57999999998754 2223344444443 356788999999875432222223335778777775 7777654
No 422
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.22 E-value=9.3e-07 Score=94.36 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=70.7
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCccee-----------ecCCC------CceecccceeeecCCCCcEEEEEcCCCccCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTI-----------VSPIS------GTTRDAIDTEFTGPEGQKFRLIDTAGIRKRA 434 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~-----------~~~~~------gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~ 434 (484)
.+|+|+|+.++|||||..+|+-..... +.+.. |.|.......+. +++..++||||||..++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~-~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQ-WENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCB-CSSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEE-ECCEEEEEEECCCcHHHH
Confidence 478999999999999999997321110 11111 566665555554 578899999999987652
Q ss_pred cccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 435 AIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
..+.++++-+|..++|||+..++..|-+.++++
T Consensus 82 --------------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~ 114 (638)
T 3j25_A 82 --------------AEVYRSLSVLDGAILLISAKDGVQAQTRILFHA 114 (638)
T ss_dssp --------------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH
T ss_pred --------------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH
Confidence 235577899999999999999999988877754
No 423
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.19 E-value=3e-06 Score=77.76 Aligned_cols=83 Identities=19% Similarity=0.253 Sum_probs=49.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCC--cEEEEEcCCCccCccccCCCCchhHHHHH
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQ--KFRLIDTAGIRKRAAIASSGSTTEALSVN 449 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~--~i~liDTPG~~~~~~~~~~~~~~~~~~~~ 449 (484)
.+|+++|.+|||||||++.++... |.....|....+....... .++. .+.||||+|.-.... .
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~-f~~~~~~Tig~d~~~k~~~-~~~~~v~l~iwDtaGqe~~~~------l------- 78 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDS-FDNTYQATIGIDFLSKTMY-LEDRTIRLQLWDTAGLERFRS------L------- 78 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CC----------CEEEEEE-CSSCEEEEEEECCSCTTTCGG------G-------
T ss_pred EEEEEECcCCcCHHHHHHHHHhCC-CCCCcCCccceEEEEEEEE-ecceEEEEEEEECCCchhhhh------H-------
Confidence 489999999999999999998753 3222222222222222222 2333 457999999643311 0
Q ss_pred HHHHHhhcCcEEEEEEeCccc
Q 011511 450 RAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 450 ~~~~~~~~~d~~l~V~~~~~~ 470 (484)
....++.+|++++|+|...+
T Consensus 79 -~~~~~~~a~~~ilv~di~~~ 98 (216)
T 4dkx_A 79 -IPSYIRDSAAAVVVYDITNV 98 (216)
T ss_dssp -HHHHHTTCSEEEEEEETTCH
T ss_pred -HHHHhccccEEEEEeecchh
Confidence 11346899999999998763
No 424
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.19 E-value=4e-06 Score=79.76 Aligned_cols=140 Identities=18% Similarity=0.179 Sum_probs=81.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee--------ccccc-cccCCCchhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD--------TGGVL-NVSKSQPNIME 233 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD--------tpG~~-~~~~~~~~~~~ 233 (484)
.-.++|+|++|||||||++.|.|.... ..+.+.++|..+.... ..|+. +.+. ...+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~p------------~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~-~~~~~~ 100 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILKP------------SSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPD-NQLFSA 100 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSCC------------SEEEEEETTEECCCSHHHHHHHHHSEEEECSSGG-GTCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCC------------CCeEEEECCEECCcccccHHHHhCcEEEEEcCcc-cccccC
Confidence 457999999999999999999986321 1345556555442100 11211 1110 011223
Q ss_pred hhhhhhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccHHH
Q 011511 234 DLAITTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADEEI 293 (484)
Q Consensus 234 ~~~~~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~ 293 (484)
++...+.|+.. |.+......++.++.+.+ ++.+++.....+.-++++| +|.+..|...
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLD--EPts~LD~~~ 178 (275)
T 3gfo_A 101 SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILD--EPTAGLDPMG 178 (275)
T ss_dssp BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEE--CTTTTCCHHH
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEE--CccccCCHHH
Confidence 45555555543 555555555555554333 2666666667788888999 7888888653
Q ss_pred H----HHHHhhc--CCCeEEEEecccCCCc
Q 011511 294 A----DWLRKNY--MDKFIILAVNKCESPR 317 (484)
Q Consensus 294 ~----~~l~~~~--~~~p~ilV~NK~Dl~~ 317 (484)
. +.+.+.. .+..++++-+..+...
T Consensus 179 ~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~ 208 (275)
T 3gfo_A 179 VSEIMKLLVEMQKELGITIIIATHDIDIVP 208 (275)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEESCCSSGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEEecCHHHHH
Confidence 3 3333221 1677788777766543
No 425
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.18 E-value=2.2e-06 Score=86.72 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=57.9
Q ss_pred CEEEEEcCCCCCchhHHHhhhcC-----------------cceeecCCCCceecccceeeec--------CCC--CcEEE
Q 011511 372 PAIAIVGRPNVGKSSILNALVGE-----------------DRTIVSPISGTTRDAIDTEFTG--------PEG--QKFRL 424 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~-----------------~~~~~~~~~gtt~~~~~~~~~~--------~~g--~~i~l 424 (484)
-.|+|+|++++|||||+|.|+|. ..|.++ ++|+......+.. .+| ..+++
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~---~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR---GGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC---CSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC---CCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 47999999999999999999974 233332 2444433333321 123 46999
Q ss_pred EEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011511 425 IDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 425 iDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
+||||+.++.. .......-.....--++++++ +..+.+.+.+...|+
T Consensus 145 lDTeG~~~~~~-------~~~~d~~ifal~~lLSs~~Iy--N~~~~i~~~~l~~L~ 191 (447)
T 3q5d_A 145 MDTQGTFDSQS-------TLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQ 191 (447)
T ss_dssp EEEECCCSSHH-------HHHHHHHHHHHHHHHCSEEEE--EESSSCCHHHHHHHH
T ss_pred EcCCccccccc-------chhhhHHHHHHHHHHhhHHHH--hhcccccHHHHHHHH
Confidence 99999976531 111111111123334565544 556788888877664
No 426
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.13 E-value=4.8e-06 Score=83.89 Aligned_cols=25 Identities=32% Similarity=0.549 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDR 396 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~ 396 (484)
..|+++|+||+|||||+|+|+|...
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3689999999999999999999754
No 427
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.07 E-value=3.5e-06 Score=88.29 Aligned_cols=84 Identities=21% Similarity=0.275 Sum_probs=49.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCccee-ecCCCCceec--------ccceeeecCCCCcEEEEEcCCCccCccccCCCC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRTI-VSPISGTTRD--------AIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGS 441 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~~-~~~~~gtt~~--------~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~ 441 (484)
..+|+++|.+|||||||+|+|.+..... ..+..|.+.. .+.... ...+..+.++||||......
T Consensus 41 ~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~-~~~~~~~~i~Dt~G~e~~~~------ 113 (535)
T 3dpu_A 41 EIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDD-ELKECLFHFWDFGGQEIMHA------ 113 (535)
T ss_dssp EEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCS-TTTTCEEEEECCCSCCTTTT------
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecC-CCceEEEEEEECCcHHHHHH------
Confidence 4589999999999999999999875321 1111222111 111111 11256799999999543211
Q ss_pred chhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 442 TTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 442 ~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
... ..++.+|++++|+|+..
T Consensus 114 ~~~--------~~l~~~d~ii~V~D~s~ 133 (535)
T 3dpu_A 114 SHQ--------FFMTRSSVYMLLLDSRT 133 (535)
T ss_dssp TCH--------HHHHSSEEEEEEECGGG
T ss_pred HHH--------HHccCCcEEEEEEeCCC
Confidence 111 23567999999999864
No 428
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.06 E-value=1.1e-05 Score=78.24 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=54.3
Q ss_pred EEEEEcCCCCCchhHHHhhhcCcceeecCCCCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHH
Q 011511 373 AIAIVGRPNVGKSSILNALVGEDRTIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAF 452 (484)
Q Consensus 373 ~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~ 452 (484)
+|+++|.+||||||+++.+.+..........+.|.......+. ..-.+.+|||||--+... ... ...
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~--~~v~LqIWDTAGQErf~~-----~~l------~~~ 67 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS--TLIDLAVMELPGQLNYFE-----PSY------DSE 67 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC--SSSCEEEEECCSCSSSCC-----CSH------HHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc--cEEEEEEEECCCchhccc-----hhh------hhh
Confidence 4789999999999999988765322111122333333222221 235789999999754310 000 012
Q ss_pred HHhhcCcEEEEEEeCcccccH
Q 011511 453 RAIRRSDVVALVIEAMACITE 473 (484)
Q Consensus 453 ~~~~~~d~~l~V~~~~~~~~~ 473 (484)
...++++++++|+|+.+++.+
T Consensus 68 ~yyr~a~~~IlV~Ditd~~~~ 88 (331)
T 3r7w_B 68 RLFKSVGALVYVIDSQDEYIN 88 (331)
T ss_dssp HHHTTCSEEEEECCCSSCTTH
T ss_pred hhccCCCEEEEEEECCchHHH
Confidence 346899999999999887433
No 429
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.00 E-value=8.7e-06 Score=82.48 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=54.8
Q ss_pred CEEEEEcCCCCCchhHHHhhhcC------cceeecCC------------------------CCceecccce---eeecCC
Q 011511 372 PAIAIVGRPNVGKSSILNALVGE------DRTIVSPI------------------------SGTTRDAIDT---EFTGPE 418 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~------~~~~~~~~------------------------~gtt~~~~~~---~~~~~~ 418 (484)
..|+++|++|+||||+++.|.+. ++..+... .+++++.... .+....
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~~ 179 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKFK 179 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHhh
Confidence 57999999999999999999873 33332211 1144443211 111125
Q ss_pred CCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccc
Q 011511 419 GQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACI 471 (484)
Q Consensus 419 g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~ 471 (484)
+..++||||||..... ...... + .....+..+|.+++|+|+....
T Consensus 180 ~~D~vIIDT~G~~~~~------~~l~~~-l-~~i~~~~~~d~vllVvda~~g~ 224 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEE------KGLLEE-M-KQIKEITNPDEIILVIDGTIGQ 224 (432)
T ss_dssp SCSEEEEECCCSCSSH------HHHHHH-H-HHTTSSSCCSEEEEEEEGGGGG
T ss_pred CCCEEEEcCCCCcccc------HHHHHH-H-HHHHHHhcCcceeEEeeccccH
Confidence 6789999999985420 001111 1 1122333689999999986543
No 430
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.00 E-value=4.6e-05 Score=74.91 Aligned_cols=136 Identities=17% Similarity=0.139 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeE--eec------ccc-ccccCCCchhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFML--VDT------GGV-LNVSKSQPNIME 233 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~l--iDt------pG~-~~~~~~~~~~~~ 233 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.- .+. .|+ ++.... +-..
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p------------~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l--~p~l 95 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQP------------DSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL--FPHL 95 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCC------------SEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC--CTTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC------------CCcEEEECCEECcccccccchhhCCEEEEeCCCcC--CCCC
Confidence 457899999999999999999986421 13444555544310 001 111 221111 1123
Q ss_pred hhhhhhhcccC--CCchhHHHHHHhhchHHHH------------------HHHHHHhhhcCeEEEEeeCCCCCCcccHHH
Q 011511 234 DLAITTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEEI 293 (484)
Q Consensus 234 ~~~~~~~~~~~--G~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~d~vilVvD~~~~~~~~~~~~ 293 (484)
++...+.|++. +.+......++.++.+.+. +.+++.....+.-++++| +|++.+|...
T Consensus 96 tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD--EPts~LD~~~ 173 (359)
T 3fvq_A 96 TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD--EPFSALDEQL 173 (359)
T ss_dssp CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--STTTTSCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe--CCcccCCHHH
Confidence 56666677665 5555556666666654443 666666666777888999 8999988764
Q ss_pred HHHHH----hh--cCCCeEEEEecccC
Q 011511 294 ADWLR----KN--YMDKFIILAVNKCE 314 (484)
Q Consensus 294 ~~~l~----~~--~~~~p~ilV~NK~D 314 (484)
...+. +. ..+..+++|-+-.+
T Consensus 174 r~~l~~~l~~~~~~~g~tvi~vTHd~~ 200 (359)
T 3fvq_A 174 RRQIREDMIAALRANGKSAVFVSHDRE 200 (359)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECCCHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 43322 21 13677777765443
No 431
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.99 E-value=3.6e-06 Score=84.15 Aligned_cols=119 Identities=14% Similarity=0.127 Sum_probs=76.5
Q ss_pred eeeEEEEEeCCceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEE
Q 011511 200 DRMYGRSFWGEHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFL 279 (484)
Q Consensus 200 ~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilV 279 (484)
......+.+++..+.+|||+|...+...+. .++..++++|+|
T Consensus 206 Gi~~~~~~~~~v~l~iwDtaGQe~~r~~w~--------------------------------------~yf~~a~~iIfV 247 (402)
T 1azs_C 206 GIFETKFQVDKVNFHMFDVGGQRDERRKWI--------------------------------------QCFNDVTAIIFV 247 (402)
T ss_dssp SEEEEEEEETTEEEEEEEECCSGGGGGGGG--------------------------------------GGTTTCCEEEEE
T ss_pred eeEEEEeecCCccceecccchhhhhhhhhH--------------------------------------hhccCCCEEEEE
Confidence 334455667788899999999987665443 345788999999
Q ss_pred eeCCCC-------C-CcccHHHHHHHHh-----hcCCCeEEEEecccCCCchhh---h----------------------
Q 011511 280 VDGQAG-------L-TAADEEIADWLRK-----NYMDKFIILAVNKCESPRKGI---M---------------------- 321 (484)
Q Consensus 280 vD~~~~-------~-~~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~~~---~---------------------- 321 (484)
+|.+.- . ...-.....++.. .+.+.|++||+||+|+..... .
T Consensus 248 ~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~ 327 (402)
T 1azs_C 248 VASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPE 327 (402)
T ss_dssp EETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCC
T ss_pred EECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccc
Confidence 998751 0 1111122333322 135789999999999754322 0
Q ss_pred --------hhHHH-----Hh---------cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 322 --------QVSEF-----WS---------LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 322 --------~~~~~-----~~---------~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
....+ .. ..+.++.+||+++.|+.+++..+.+.+.
T Consensus 328 ~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I~ 384 (402)
T 1azs_C 328 PGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDIIQ 384 (402)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHHH
Confidence 11111 11 1234568999999999999998877654
No 432
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.98 E-value=4.2e-06 Score=78.94 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCCchhHHHhhh-----cCcceeecCCCC
Q 011511 370 RIPAIAIVGRPNVGKSSILNALV-----GEDRTIVSPISG 404 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Ll-----g~~~~~~~~~~g 404 (484)
+...++++|+.|+||||+++.|. |.++..+...++
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 34578999999999999999998 887777765554
No 433
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.97 E-value=2.5e-05 Score=82.89 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=23.4
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
..+.|+|+|++|||||||+++|.|..
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCC
Confidence 46679999999999999999999874
No 434
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.97 E-value=1.7e-05 Score=76.52 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCcceeecCCC------Ccee--cccceeeecC-CCCcEEEEEcCCCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGEDRTIVSPIS------GTTR--DAIDTEFTGP-EGQKFRLIDTAGIR 431 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~~------gtt~--~~~~~~~~~~-~g~~i~liDTPG~~ 431 (484)
.+|+++|+||+|||||+|+|.|...+....++ ..|. .......... ....+.++||||+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 47899999999999999999986444332111 0111 1111111110 12357899999984
No 435
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.95 E-value=1.6e-05 Score=85.95 Aligned_cols=97 Identities=15% Similarity=0.111 Sum_probs=66.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcCcce-----e------ecC------CCCceecccceeeecC------CCCcEEEEEc
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGEDRT-----I------VSP------ISGTTRDAIDTEFTGP------EGQKFRLIDT 427 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~~~~-----~------~~~------~~gtt~~~~~~~~~~~------~g~~i~liDT 427 (484)
..+|+|+|+..+|||||.-+|+-.... . +.+ .-|.|.......+.+. ++..++||||
T Consensus 13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT 92 (709)
T 4fn5_A 13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT 92 (709)
T ss_dssp EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence 458999999999999999998732111 0 000 1155655544444321 2457999999
Q ss_pred CCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 428 AGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 428 PG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
||..++. ..+.++++-+|..++|||+..++..|-+.++++
T Consensus 93 PGHvDF~--------------~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~ 132 (709)
T 4fn5_A 93 PGHVDFT--------------IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ 132 (709)
T ss_dssp CSCTTCH--------------HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CCCcccH--------------HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH
Confidence 9987652 235577899999999999999999999988865
No 436
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.93 E-value=5.6e-05 Score=74.38 Aligned_cols=136 Identities=18% Similarity=0.189 Sum_probs=79.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee---------cccc-ccccCCCchhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD---------TGGV-LNVSKSQPNIM 232 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD---------tpG~-~~~~~~~~~~~ 232 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-.. ..|+ ++.... ...
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~~p------------~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l--~~~ 119 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLERP------------TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL--LSS 119 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC--CTT
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCCCC------------CceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc--CCC
Confidence 457999999999999999999986421 1344555554432111 0111 121111 112
Q ss_pred hhhhhhhhcccC--CCchhHHHHHHhhchHHHH------------------HHHHHHhhhcCeEEEEeeCCCCCCcccHH
Q 011511 233 EDLAITTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEE 292 (484)
Q Consensus 233 ~~~~~~~~~~~~--G~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~d~vilVvD~~~~~~~~~~~ 292 (484)
.++...+.|++. |.+......++.++.+.+. +.+++.....+.-++++| +|.+.+|..
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlD--EPTs~LD~~ 197 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD--QATSALDPA 197 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEE--STTTTSCHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE--CCCccCCHH
Confidence 244444444432 5666666666666654443 666666666788888999 788888875
Q ss_pred HH----HHHHhhc--CCCeEEEEecccC
Q 011511 293 IA----DWLRKNY--MDKFIILAVNKCE 314 (484)
Q Consensus 293 ~~----~~l~~~~--~~~p~ilV~NK~D 314 (484)
.. +.+.+.. .+..+++|-+..+
T Consensus 198 ~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 198 TTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 43 3333321 2667777766554
No 437
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.93 E-value=2.4e-05 Score=77.58 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=78.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEe-----eccccccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLV-----DTGGVLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~li-----DtpG~~~~~~~~~~~~~~~~~ 237 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-. ...-+++.... +-..++..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~p------------~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l--~p~ltV~e 94 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLETI------------TSGDLFIGEKRMNDTPPAERGVGMVFQSYAL--YPHLSVAE 94 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECTTCCGGGSCEEEECTTCCC--CTTSCHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCCC------------CCeEEEECCEECCCCCHHHCCEEEEecCCcC--CCCCCHHH
Confidence 457899999999999999999986421 134445555433111 01111222111 11224555
Q ss_pred hhhcccC--CCchhHHHHHHhhchHHHH------------------HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHH--
Q 011511 238 TTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEEIAD-- 295 (484)
Q Consensus 238 ~~~~~~~--G~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~-- 295 (484)
.+.|++. |.+...+..++.++.+.+. +.+++.....+.-++++| +|++.+|.....
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLD--EPts~LD~~~~~~l 172 (381)
T 3rlf_A 95 NMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLD--EPLSNLDAALRVQM 172 (381)
T ss_dssp HHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEE--STTTTSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEE--CCCcCCCHHHHHHH
Confidence 5555543 6666666666666554432 556666666677788899 899998865433
Q ss_pred --HHHhhc--CCCeEEEEecccC
Q 011511 296 --WLRKNY--MDKFIILAVNKCE 314 (484)
Q Consensus 296 --~l~~~~--~~~p~ilV~NK~D 314 (484)
.+.+.. .+..+++|-+..+
T Consensus 173 ~~~l~~l~~~~g~tii~vTHd~~ 195 (381)
T 3rlf_A 173 RIEISRLHKRLGRTMIYVTHDQV 195 (381)
T ss_dssp HHHHHHHHHHHCCEEEEECSCHH
T ss_pred HHHHHHHHHhCCCEEEEEECCHH
Confidence 332211 2667777765543
No 438
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.93 E-value=6.3e-05 Score=72.30 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=41.9
Q ss_pred hhhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCe-EEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchhh
Q 011511 270 IEESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKF-IILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELL 348 (484)
Q Consensus 270 ~~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p-~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~ 348 (484)
+..+|.+++|+|+..+ .......+.+.. ..+ ..+|+||+|...............+.|+.+++ +|++++++.
T Consensus 210 ~~~~d~vllVvda~~g--~~~~~~~~~~~~---~~~i~gvVlnk~D~~~~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl~ 282 (297)
T 1j8m_F 210 AIKPDEVTLVIDASIG--QKAYDLASKFNQ---ASKIGTIIITKMDGTAKGGGALSAVAATGATIKFIG--TGEKIDELE 282 (297)
T ss_dssp HHCCSEEEEEEEGGGG--GGHHHHHHHHHH---TCTTEEEEEECGGGCTTHHHHHHHHHTTTCCEEEEE--CSSSTTCEE
T ss_pred HhcCCEEEEEeeCCch--HHHHHHHHHHHh---hCCCCEEEEeCCCCCcchHHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 4468999999997642 222222232322 345 67899999976432211112233456776665 677777764
Q ss_pred H
Q 011511 349 D 349 (484)
Q Consensus 349 ~ 349 (484)
.
T Consensus 283 ~ 283 (297)
T 1j8m_F 283 V 283 (297)
T ss_dssp E
T ss_pred c
Confidence 3
No 439
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.93 E-value=5.8e-06 Score=81.54 Aligned_cols=109 Identities=18% Similarity=0.166 Sum_probs=68.5
Q ss_pred CceeeEeeccccccccCCCchhhhhhhhhhhcccCCCchhHHHHHHhhchHHHHHHHHHHhhhcCeEEEEeeCCC-----
Q 011511 210 EHEFMLVDTGGVLNVSKSQPNIMEDLAITTTIGMEGIPLATREAAVARMPSMIERQATAAIEESCVIIFLVDGQA----- 284 (484)
Q Consensus 210 ~~~i~liDtpG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~vilVvD~~~----- 284 (484)
...+.+|||+|...+...+. .++..++++|+|+|.+.
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~--------------------------------------~y~~~~~~iI~v~dis~ydq~l 223 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWI--------------------------------------HLFEGVTAVIFCAAISEYDQTL 223 (354)
T ss_dssp --EEEEEEECCSTTGGGGTG--------------------------------------GGCTTEEEEEEEEEGGGTTCBC
T ss_pred ceeeEEEECCCchhhhHHHH--------------------------------------HHhCCCCEEEEEEECccccccc
Confidence 35789999999987665543 34578899999999761
Q ss_pred --CCC-cccHHHHHHHHh-----hcCCCeEEEEecccCCCchhh------------------------hhhHHHHh----
Q 011511 285 --GLT-AADEEIADWLRK-----NYMDKFIILAVNKCESPRKGI------------------------MQVSEFWS---- 328 (484)
Q Consensus 285 --~~~-~~~~~~~~~l~~-----~~~~~p~ilV~NK~Dl~~~~~------------------------~~~~~~~~---- 328 (484)
... ..-.+...++.. .+.+.|++||+||+|+..... .....+..
T Consensus 224 ~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~ 303 (354)
T 2xtz_A 224 FEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFE 303 (354)
T ss_dssp SSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHH
Confidence 111 111222233322 135789999999999753221 11111211
Q ss_pred -------------cCCCceeeecccCCCCchhhHHHHHHhh
Q 011511 329 -------------LGFSPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 329 -------------~~~~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
..+.++++||+++.|+.+++..+.+.+.
T Consensus 304 ~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~ 344 (354)
T 2xtz_A 304 ELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLR 344 (354)
T ss_dssp HHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred HhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHH
Confidence 1123578999999999999998877654
No 440
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.88 E-value=9.8e-05 Score=73.19 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=76.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEe----ecc------cc-ccccCCCchh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLV----DTG------GV-LNVSKSQPNI 231 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~li----Dtp------G~-~~~~~~~~~~ 231 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-. ..+ |+ ++.... +-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l--~~ 94 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEP------------SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL--YP 94 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC------------SEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC--CT
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCC------------CccEEEECCEECccccccccCCHhHCCEEEEeCCCcc--CC
Confidence 347899999999999999999986421 123444444433210 011 11 111111 11
Q ss_pred hhhhhhhhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 232 MEDLAITTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 232 ~~~~~~~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
..++...+.|++. +.+......++.++.+.+ ++.+++.....+.-++++| +|++.+|.
T Consensus 95 ~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD--EP~s~LD~ 172 (372)
T 1g29_1 95 HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD--EPLSNLDA 172 (372)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE--CTTTTSCH
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC--CCCccCCH
Confidence 2244455555433 555555555555555444 2566666666777888999 89999987
Q ss_pred HHHHH----HHhhc--CCCeEEEEeccc
Q 011511 292 EIADW----LRKNY--MDKFIILAVNKC 313 (484)
Q Consensus 292 ~~~~~----l~~~~--~~~p~ilV~NK~ 313 (484)
..... +.+.. .+..+++|-+-.
T Consensus 173 ~~r~~l~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 173 KLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECCCH
Confidence 64433 32211 156677765543
No 441
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.87 E-value=8.7e-05 Score=68.32 Aligned_cols=25 Identities=32% Similarity=0.244 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4478999999999999999999863
No 442
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.86 E-value=0.00013 Score=68.52 Aligned_cols=51 Identities=4% Similarity=-0.007 Sum_probs=32.8
Q ss_pred HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHH----HHHhhc-CCCeEEEEecccCCC
Q 011511 264 RQATAAIEESCVIIFLVDGQAGLTAADEEIAD----WLRKNY-MDKFIILAVNKCESP 316 (484)
Q Consensus 264 ~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~----~l~~~~-~~~p~ilV~NK~Dl~ 316 (484)
+.+++.....+.-++++| +|.+..|..... .+.+.. .+..++++-+..+..
T Consensus 161 rv~iAraL~~~p~lllLD--EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 216 (257)
T 1g6h_A 161 LVEIGRALMTNPKMIVMD--EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIV 216 (257)
T ss_dssp HHHHHHHHHTCCSEEEEE--STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTT
T ss_pred HHHHHHHHHcCCCEEEEe--CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 556666666777788899 888888876443 333221 256777776666544
No 443
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.86 E-value=6.1e-05 Score=74.57 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=76.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee----cccc-ccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD----TGGV-LNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD----tpG~-~~~~~~~~~~~~~~~~ 237 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-+. -.|+ ++.... +-..++..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l--~~~ltv~e 102 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEEP------------TEGRIYFGDRDVTYLPPKDRNISMVFQSYAV--WPHMTVYE 102 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECTTSCGGGGTEEEEEC--------CCCHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC------------CceEEEECCEECCCCChhhCcEEEEecCccc--CCCCCHHH
Confidence 457899999999999999999986421 1233444443321000 0011 111110 11224555
Q ss_pred hhhcccC--CCchhHHHHHHhhchHHHH------------------HHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHHH
Q 011511 238 TTTIGME--GIPLATREAAVARMPSMIE------------------RQATAAIEESCVIIFLVDGQAGLTAADEEIADWL 297 (484)
Q Consensus 238 ~~~~~~~--G~~~~~~~~~v~~~~~~~~------------------~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~l 297 (484)
.+.|++. +.+......++.++.+.+. +.+++.....+.-++++| +|++.+|......+
T Consensus 103 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD--EP~s~LD~~~r~~l 180 (372)
T 1v43_A 103 NIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMD--EPLSNLDAKLRVAM 180 (372)
T ss_dssp HHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEE--STTTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc--CCCccCCHHHHHHH
Confidence 6666654 5555555566666554442 566666666777788899 89999987644333
Q ss_pred H----hhc--CCCeEEEEeccc
Q 011511 298 R----KNY--MDKFIILAVNKC 313 (484)
Q Consensus 298 ~----~~~--~~~p~ilV~NK~ 313 (484)
. +.. .+..+++|-+-.
T Consensus 181 ~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 181 RAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHhCCCEEEEEeCCH
Confidence 2 211 156677765543
No 444
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.85 E-value=7.8e-05 Score=70.32 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4579999999999999999999863
No 445
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.84 E-value=4.3e-05 Score=76.73 Aligned_cols=99 Identities=17% Similarity=0.220 Sum_probs=54.5
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcceeecCC----CCceecccceeeecCCCCcEEEEEcCCCccCccccCCCCchhH
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDRTIVSPI----SGTTRDAIDTEFTGPEGQKFRLIDTAGIRKRAAIASSGSTTEA 445 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~~~~~~~----~gtt~~~~~~~~~~~~g~~i~liDTPG~~~~~~~~~~~~~~~~ 445 (484)
....++++|+||+|||||+|+|+|......+.+ ..+|+.. ..........+.++|+||+.... .....
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~--~v~q~~~~~~ltv~D~~g~~~~~------~~~~~ 139 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGSTN------FPPDT 139 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGGSS------CCHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeE--EeccccccCCeeehHhhcccchH------HHHHH
Confidence 345899999999999999999999532222211 1123321 11222223478999999985321 11211
Q ss_pred HHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhhh
Q 011511 446 LSVNRAFRAIRRSDVVALVIEAMACITEQADWRDHR 481 (484)
Q Consensus 446 ~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~~ 481 (484)
. +... .+...+.+++ ++. +++.+++..++..
T Consensus 140 ~-L~~~--~L~~~~~~~~-lS~-G~~~kqrv~la~a 170 (413)
T 1tq4_A 140 Y-LEKM--KFYEYDFFII-ISA-TRFKKNDIDIAKA 170 (413)
T ss_dssp H-HHHT--TGGGCSEEEE-EES-SCCCHHHHHHHHH
T ss_pred H-HHHc--CCCccCCeEE-eCC-CCccHHHHHHHHH
Confidence 1 1111 2344455555 664 3477777776654
No 446
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.81 E-value=0.00011 Score=68.51 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999863
No 447
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.81 E-value=0.00011 Score=70.77 Aligned_cols=135 Identities=20% Similarity=0.135 Sum_probs=72.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-+++|+|++|+|||||++.|.|-.. ...+.+.++|..+.-++. .|+... ....+..++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~~------------p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q--~~~lf~~Tv~ 145 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFYD------------ISSGCIRIDGQDISQVTQASLRSHIGVVPQ--DTVLFNDTIA 145 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSSC------------CSEEEEEETTEETTSBCHHHHHHTEEEECS--SCCCCSEEHH
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC------------CCCcEEEECCEEcccCCHHHHhcceEEEec--CCccCcccHH
Confidence 45899999999999999999998631 123445555544322111 111110 1112233555
Q ss_pred hhhhcccCCCchhHHHHHHh------------------------hch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 237 ITTTIGMEGIPLATREAAVA------------------------RMP-SMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~------------------------~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
..+.|+.+......+..... .++ .+.++.+++.....+.-|+++| +|.+..|.
T Consensus 146 eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLD--EPts~LD~ 223 (306)
T 3nh6_A 146 DNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLD--EATSALDT 223 (306)
T ss_dssp HHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEE--CCSSCCCH
T ss_pred HHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEE--CCcccCCH
Confidence 55666655433332222111 121 2233555555555566677888 78888886
Q ss_pred HHH----HHHHhhcCCCeEEEEeccc
Q 011511 292 EIA----DWLRKNYMDKFIILAVNKC 313 (484)
Q Consensus 292 ~~~----~~l~~~~~~~p~ilV~NK~ 313 (484)
... +.+.+...++.+++|.+..
T Consensus 224 ~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 224 SNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 543 3344333466777766554
No 448
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.81 E-value=7.8e-05 Score=75.21 Aligned_cols=91 Identities=22% Similarity=0.299 Sum_probs=53.9
Q ss_pred CCEEEEEcCCCCCchhHHHhhh------cCcceeecCCCC----------------ce-------ecccce---e--eec
Q 011511 371 IPAIAIVGRPNVGKSSILNALV------GEDRTIVSPISG----------------TT-------RDAIDT---E--FTG 416 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll------g~~~~~~~~~~g----------------tt-------~~~~~~---~--~~~ 416 (484)
...|+++|.+|+||||+++.|. |.++..+...+. .. .+.... . ...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999998 555544432221 10 000000 0 000
Q ss_pred CCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcc
Q 011511 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
..+..++||||||..... ..... ....+.....+|.+++|+|+..
T Consensus 180 ~~~~DvVIIDTaGrl~~d------~~lm~--el~~i~~~~~pd~vlLVvDA~~ 224 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKED------KALIE--EMKQISNVIHPHEVILVIDGTI 224 (443)
T ss_dssp HTTCSEEEEECCCCSSCC------HHHHH--HHHHHHHHHCCSEEEEEEEGGG
T ss_pred hCCCCEEEEECCCcccch------HHHHH--HHHHHHHhhcCceEEEEEeCCC
Confidence 134689999999975421 11111 1222344557899999999875
No 449
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.81 E-value=8.6e-05 Score=73.13 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee----cccc-ccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD----TGGV-LNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD----tpG~-~~~~~~~~~~~~~~~~ 237 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-+. -.|+ ++.... +-..++..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l--~~~ltv~e 94 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYKP------------TSGEIYFDDVLVNDIPPKYREVGMVFQNYAL--YPHMTVFE 94 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECTTSCGGGTTEEEECSSCCC--CTTSCHHH
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCCC------------CccEEEECCEECCCCChhhCcEEEEecCccc--CCCCCHHH
Confidence 457899999999999999999986421 1233444443321100 0011 111111 11124455
Q ss_pred hhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHH-
Q 011511 238 TTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADEEIADW- 296 (484)
Q Consensus 238 ~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~- 296 (484)
.+.|++. +.+......++.++.+.+ ++.+++.....+.-++++| +|++.+|......
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLD--EP~s~LD~~~r~~l 172 (359)
T 2yyz_A 95 NIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFD--EPLSNLDANLRMIM 172 (359)
T ss_dssp HHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--STTTTSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE--CCcccCCHHHHHHH
Confidence 5555543 444333333444433322 3566666666777788899 8999998764433
Q ss_pred ---HHhhc--CCCeEEEEeccc
Q 011511 297 ---LRKNY--MDKFIILAVNKC 313 (484)
Q Consensus 297 ---l~~~~--~~~p~ilV~NK~ 313 (484)
+.+.. .+..+++|-+-.
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 173 RAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp HHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 32211 156677765543
No 450
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.80 E-value=8.7e-05 Score=72.95 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=71.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee----ccc-cccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD----TGG-VLNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD----tpG-~~~~~~~~~~~~~~~~~ 237 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-.. -.| +++.... +-..++..
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l--~~~ltv~e 106 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLERP------------TKGDVWIGGKRVTDLPPQKRNVGLVFQNYAL--FQHMTVYD 106 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECTTCCGGGSSEEEECGGGCC--CTTSCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC------------CccEEEECCEECCcCChhhCcEEEEecCccc--CCCCCHHH
Confidence 457899999999999999999986421 1233444443321000 001 1111111 01123344
Q ss_pred hhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHH-
Q 011511 238 TTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADEEIADW- 296 (484)
Q Consensus 238 ~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~- 296 (484)
.+.|++. +.+......++.++.+.+ ++.+++.....+.-++++| +|++.+|......
T Consensus 107 ni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD--EP~s~LD~~~r~~l 184 (355)
T 1z47_A 107 NVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFD--EPFAAIDTQIRREL 184 (355)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--STTCCSSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe--CCcccCCHHHHHHH
Confidence 4444432 444444444444444332 3566666666777888999 8999998764433
Q ss_pred ---HHhhc--CCCeEEEEecc
Q 011511 297 ---LRKNY--MDKFIILAVNK 312 (484)
Q Consensus 297 ---l~~~~--~~~p~ilV~NK 312 (484)
+.+.. .+..+++|-+-
T Consensus 185 ~~~l~~l~~~~g~tvi~vTHd 205 (355)
T 1z47_A 185 RTFVRQVHDEMGVTSVFVTHD 205 (355)
T ss_dssp HHHHHHHHHHHTCEEEEECSC
T ss_pred HHHHHHHHHhcCCEEEEECCC
Confidence 32211 15666666544
No 451
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.78 E-value=0.00011 Score=68.23 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|||||||++.|.|..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4579999999999999999999864
No 452
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.77 E-value=1.2e-05 Score=78.48 Aligned_cols=73 Identities=22% Similarity=0.221 Sum_probs=41.9
Q ss_pred hhcCeEEEEeeCCCCCCcccHHHHHHHHhhcCCCeEEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchhhH
Q 011511 271 EESCVIIFLVDGQAGLTAADEEIADWLRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLD 349 (484)
Q Consensus 271 ~~~d~vilVvD~~~~~~~~~~~~~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~ 349 (484)
..+|..++++|+..+. .-......+.+. -....+++||.|...............+.|+.+++ +|++++++..
T Consensus 240 l~~de~llvLDa~t~~--~~~~~~~~~~~~--~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~--~Ge~v~dl~~ 312 (328)
T 3e70_C 240 TKPNLVIFVGDALAGN--AIVEQARQFNEA--VKIDGIILTKLDADARGGAALSISYVIDAPILFVG--VGQGYDDLRP 312 (328)
T ss_dssp HCCSEEEEEEEGGGTT--HHHHHHHHHHHH--SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEE--CSSSTTCEEE
T ss_pred hcCCCCEEEEecHHHH--HHHHHHHHHHHh--cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEe--CCCCcccccc
Confidence 4578999999975441 112222333322 23347789999975432222222334577887777 7888777643
No 453
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.76 E-value=6.8e-05 Score=70.90 Aligned_cols=25 Identities=40% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4579999999999999999999863
No 454
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.74 E-value=9.5e-05 Score=72.90 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEee----cccc-ccccCCCchhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVD----TGGV-LNVSKSQPNIMEDLAI 237 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liD----tpG~-~~~~~~~~~~~~~~~~ 237 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-+. -.|+ ++.... +-..++..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l--~~~ltv~e 94 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYKP------------TSGKIYFDEKDVTELPPKDRNVGLVFQNWAL--YPHMTVYK 94 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSCC------------SEEEEEETTEECTTSCGGGTTEEEECTTCCC--CTTSCHHH
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCC------------CceEEEECCEECCcCCHhHCcEEEEecCccc--CCCCCHHH
Confidence 457899999999999999999986421 1233444443321000 0011 111111 11123444
Q ss_pred hhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHHH-
Q 011511 238 TTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADEEIADW- 296 (484)
Q Consensus 238 ~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~~- 296 (484)
.+.|++. +.+......++.++.+.+ ++.+++.....+.-++++| +|++.+|......
T Consensus 95 ni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD--EP~s~LD~~~r~~l 172 (362)
T 2it1_A 95 NIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLD--EPLSNLDALLRLEV 172 (362)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--SGGGGSCHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEE--CccccCCHHHHHHH
Confidence 4444432 444444445555444333 3566666666777888999 8888888764433
Q ss_pred ---HHhhc--CCCeEEEEeccc
Q 011511 297 ---LRKNY--MDKFIILAVNKC 313 (484)
Q Consensus 297 ---l~~~~--~~~p~ilV~NK~ 313 (484)
+.+.. .+..+++|-+-.
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 173 RAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp HHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHhCCCEEEEECCCH
Confidence 32211 156677765543
No 455
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.73 E-value=0.00011 Score=72.40 Aligned_cols=135 Identities=11% Similarity=0.140 Sum_probs=74.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEe---ecc------cc-ccccCCCchhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLV---DTG------GV-LNVSKSQPNIM 232 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~li---Dtp------G~-~~~~~~~~~~~ 232 (484)
.-.++|+|++|||||||++.|.|-... ..+.+.++|..+.-. +.+ |+ ++.... +-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~~p------------~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l--~~~ 96 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLDVP------------STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL--YPN 96 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSSCC------------SEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC--CTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC------------CceEEEECCEECcccccccCChhhCCEEEEeCCCcc--CCC
Confidence 457899999999999999999986421 123344444333210 011 11 111111 112
Q ss_pred hhhhhhhhcccC--CCchhHHHHHHhhchHHH------------------HHHHHHHhhhcCeEEEEeeCCCCCCcccHH
Q 011511 233 EDLAITTTIGME--GIPLATREAAVARMPSMI------------------ERQATAAIEESCVIIFLVDGQAGLTAADEE 292 (484)
Q Consensus 233 ~~~~~~~~~~~~--G~~~~~~~~~v~~~~~~~------------------~~~~~~~~~~~d~vilVvD~~~~~~~~~~~ 292 (484)
.++...+.|++. +.+......++.++.+.+ ++.+++.....+.-++++| +|++.+|..
T Consensus 97 ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLD--EP~s~LD~~ 174 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLD--EPFSNLDAR 174 (353)
T ss_dssp SCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE--STTTTSCGG
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE--CCcccCCHH
Confidence 245555566544 445444455555544333 3566666666777888999 788888754
Q ss_pred H----HHHHHhhc--CCCeEEEEeccc
Q 011511 293 I----ADWLRKNY--MDKFIILAVNKC 313 (484)
Q Consensus 293 ~----~~~l~~~~--~~~p~ilV~NK~ 313 (484)
. ...+.+.. .+..+++|-+-.
T Consensus 175 ~r~~l~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 175 MRDSARALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp GHHHHHHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 3 33333221 156777766543
No 456
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.72 E-value=0.00018 Score=67.49 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999863
No 457
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.69 E-value=0.00045 Score=65.02 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~ 186 (484)
.-.++|+|++|+|||||++.|.|.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999986
No 458
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.69 E-value=0.00034 Score=65.34 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999863
No 459
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.68 E-value=2.8e-05 Score=73.15 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCEEEEEcCC---------CCCchhHHHhhhcC
Q 011511 371 IPAIAIVGRP---------NVGKSSILNALVGE 394 (484)
Q Consensus 371 ~~~i~lvG~~---------g~GKSTLiN~Llg~ 394 (484)
..+|+++|.+ |||||||+|.+++.
T Consensus 19 ~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 19 TYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred eeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 4589999999 99999999999984
No 460
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.67 E-value=0.00017 Score=68.17 Aligned_cols=53 Identities=25% Similarity=0.205 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhcCeEEEEeeCCCCCCcccHHHHH----HHHhhc-CCCeEEEEecccCCC
Q 011511 262 IERQATAAIEESCVIIFLVDGQAGLTAADEEIAD----WLRKNY-MDKFIILAVNKCESP 316 (484)
Q Consensus 262 ~~~~~~~~~~~~d~vilVvD~~~~~~~~~~~~~~----~l~~~~-~~~p~ilV~NK~Dl~ 316 (484)
.++.+++.....+.-++++| +|.+..|..... .+.+.. .+..++++-+..+..
T Consensus 144 ~qRv~lAraL~~~p~lllLD--EPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILD--EPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEE--STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHHHHHHHHHHcCCCEEEEc--CccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 34666666667778888999 888888876443 333321 256667766655543
No 461
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.65 E-value=0.00019 Score=73.13 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=24.3
Q ss_pred hhccCCCEEEEEcCCCCCchhHHHhhhcC
Q 011511 366 EEENRIPAIAIVGRPNVGKSSILNALVGE 394 (484)
Q Consensus 366 ~~~~~~~~i~lvG~~g~GKSTLiN~Llg~ 394 (484)
.....+..++|+|.||+|||||++.|.|.
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 33455678999999999999999999873
No 462
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.64 E-value=0.00022 Score=67.18 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|||||||++.|.|..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999863
No 463
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.62 E-value=0.00018 Score=68.46 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4579999999999999999999863
No 464
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.59 E-value=0.00024 Score=65.98 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.9
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
-.++|+|++|+|||||++.|.|..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999863
No 465
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.58 E-value=0.00035 Score=66.17 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999863
No 466
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.56 E-value=0.00042 Score=66.71 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGG 186 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~ 186 (484)
..-.|+|+|++||||||+++.|.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3458999999999999999999853
No 467
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.51 E-value=0.00018 Score=76.23 Aligned_cols=24 Identities=54% Similarity=0.841 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCCchhHHHhhhcCc
Q 011511 372 PAIAIVGRPNVGKSSILNALVGED 395 (484)
Q Consensus 372 ~~i~lvG~~g~GKSTLiN~Llg~~ 395 (484)
+.++++|++|+|||||+|+|.|..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 469999999999999999999963
No 468
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.51 E-value=0.00047 Score=72.97 Aligned_cols=136 Identities=15% Similarity=0.119 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-+++++|++|+|||||++.|.|...+ ..+.+.++|.++.-++. .|+.. .....+..++.
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~~~p------------~~G~i~~~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~~tv~ 446 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRFYDV------------DRGQILVDGIDIRKIKRSSLRSSIGIVL--QDTILFSTTVK 446 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTSSCC------------SEEEEEETTEEGGGSCHHHHHHHEEEEC--TTCCCCSSBHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCcCC------------CCeEEEECCEEhhhCCHHHHHhceEEEe--CCCccccccHH
Confidence 458999999999999999999986321 13445555543321111 11110 00111222444
Q ss_pred hhhhcccCCCchhHHHHHH------------------------hhc-hHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 237 ITTTIGMEGIPLATREAAV------------------------ARM-PSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v------------------------~~~-~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
..+.++.++...+.+.... .++ .++.++.+++.....+.-++++| +|.+..|.
T Consensus 447 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlD--Epts~LD~ 524 (598)
T 3qf4_B 447 ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILD--EATSNVDT 524 (598)
T ss_dssp HHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEEC--CCCTTCCH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEE--CCccCCCH
Confidence 4445554443333332221 223 23334555555555566677888 78888887
Q ss_pred HHHH----HHHhhcCCCeEEEEecccC
Q 011511 292 EIAD----WLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 292 ~~~~----~l~~~~~~~p~ilV~NK~D 314 (484)
.... .+.+...++.++++.+..+
T Consensus 525 ~~~~~i~~~l~~~~~~~t~i~itH~l~ 551 (598)
T 3qf4_B 525 KTEKSIQAAMWKLMEGKTSIIIAHRLN 551 (598)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEESCCTT
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 5443 3333334677787777654
No 469
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.51 E-value=2.3e-05 Score=70.47 Aligned_cols=60 Identities=28% Similarity=0.538 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhcCcc-eeecCCCCceecccceeeecCCCCcEEEEEcCCCcc
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVGEDR-TIVSPISGTTRDAIDTEFTGPEGQKFRLIDTAGIRK 432 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg~~~-~~~~~~~gtt~~~~~~~~~~~~g~~i~liDTPG~~~ 432 (484)
.+..++|+|++|+|||||+|.|++... .....++.|||...... .+|..+.++|++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE---~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE---EDGKEYHFISTEEMTR 78 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC---CTTSSCEECCHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe---eccccceeccHHHhhh
Confidence 456899999999999999999998643 34566778888775543 3677778888777643
No 470
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.51 E-value=0.0023 Score=59.16 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=22.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999864
No 471
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.51 E-value=0.0011 Score=62.58 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~ 186 (484)
.-.++|+|++|+|||||++.|.|.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999985
No 472
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.50 E-value=9.6e-05 Score=66.34 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=59.1
Q ss_pred HHHHHhhhcCeEEEEeeCCCCCCcc-cHHH---HHHHHhh--cCCCeEEEEeccc-CCCch----hhhhhHHH--HhcCC
Q 011511 265 QATAAIEESCVIIFLVDGQAGLTAA-DEEI---ADWLRKN--YMDKFIILAVNKC-ESPRK----GIMQVSEF--WSLGF 331 (484)
Q Consensus 265 ~~~~~~~~~d~vilVvD~~~~~~~~-~~~~---~~~l~~~--~~~~p~ilV~NK~-Dl~~~----~~~~~~~~--~~~~~ 331 (484)
....++.++|.+|||+|+.+..... ..++ ...+.+. +.+.|++|+.||. |+... ++...+.+ ....+
T Consensus 118 lWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~l~R~W 197 (227)
T 3l82_B 118 QIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNLLNHPW 197 (227)
T ss_dssp CHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGGGCSCE
T ss_pred HHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcCCCCCE
Confidence 3456788999999999987642221 1222 1122222 2578999999995 66532 11111111 12345
Q ss_pred CceeeecccCCCCchhhHHHHHHhh
Q 011511 332 SPLPISAISGTGTGELLDLVCSELK 356 (484)
Q Consensus 332 ~~i~vSa~~g~gi~~L~~~i~~~l~ 356 (484)
.+.++||++|+|+.+-++|+.+.+.
T Consensus 198 ~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 198 LVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp EEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred EEEEeECCCCcCHHHHHHHHHHHHH
Confidence 6889999999999999999987664
No 473
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.49 E-value=0.00034 Score=68.63 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|||||||++.|.|-.
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3478999999999999999999864
No 474
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.47 E-value=0.00013 Score=73.71 Aligned_cols=61 Identities=21% Similarity=0.293 Sum_probs=41.6
Q ss_pred CCCeEEEEcCCCCChhHHHHHHhCC---------------cceeeecCCCceeeeeEEEEEeC-----------CceeeE
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLVGG---------------NRAIVVDEPGVTRDRMYGRSFWG-----------EHEFML 215 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~~~---------------~~~~~~~~~~~t~~~~~~~~~~~-----------~~~i~l 215 (484)
+...|+|+|.+++|||+|+|.|+|. .....+ ..+++..+..+...+. ...+.+
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~-~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvl 144 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFS-WRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSC-SCCSSCCCCCEEEEESSCEEEECSSSCEEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceec-CCCCCCCceeEEEEecCccccccCCCCcceEEE
Confidence 3567999999999999999999863 111122 2234555555555443 235899
Q ss_pred eecccccc
Q 011511 216 VDTGGVLN 223 (484)
Q Consensus 216 iDtpG~~~ 223 (484)
+||||+..
T Consensus 145 lDTeG~~~ 152 (447)
T 3q5d_A 145 MDTQGTFD 152 (447)
T ss_dssp EEEECCCS
T ss_pred EcCCcccc
Confidence 99999864
No 475
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.46 E-value=0.00032 Score=65.29 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999863
No 476
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.46 E-value=0.00056 Score=72.08 Aligned_cols=137 Identities=18% Similarity=0.136 Sum_probs=74.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-.++++|++|+|||||++.|.|... ...+.+.++|.++.-++. .|+.. .....+..++.
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~~~------------p~~G~i~~~g~~~~~~~~~~~r~~i~~v~--Q~~~l~~~tv~ 432 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRFYD------------VTSGQILIDGHNIKDFLTGSLRNQIGLVQ--QDNILFSDTVK 432 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTSSC------------CSEEEEEETTEEGGGSCHHHHHHTEEEEC--SSCCCCSSBHH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCCC------------CCCcEEEECCEEhhhCCHHHHhhheEEEe--CCCccCcccHH
Confidence 45899999999999999999998632 123445555544321111 11111 01112223455
Q ss_pred hhhhcccCCCchhHHHHHHh------------------------hch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 237 ITTTIGMEGIPLATREAAVA------------------------RMP-SMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~------------------------~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
+.+.++.+....+.+....+ +++ .+.++.+++.....+.-++++| +|.+..|.
T Consensus 433 eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlD--Epts~LD~ 510 (578)
T 4a82_A 433 ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILD--EATSALDL 510 (578)
T ss_dssp HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEE--STTTTCCH
T ss_pred HHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEE--CccccCCH
Confidence 55566555443333322221 221 2333555555555566677888 78888887
Q ss_pred HHHH----HHHhhcCCCeEEEEecccCC
Q 011511 292 EIAD----WLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 292 ~~~~----~l~~~~~~~p~ilV~NK~Dl 315 (484)
.... .+.....++.++++-+..+.
T Consensus 511 ~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 511 ESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 5443 33333346777777766653
No 477
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.44 E-value=0.00053 Score=65.83 Aligned_cols=92 Identities=24% Similarity=0.247 Sum_probs=52.1
Q ss_pred CCEEEEEcCCCCCchhHHHhhh------cCcceeecCCCC---ce--------------------ecccce---eee-c-
Q 011511 371 IPAIAIVGRPNVGKSSILNALV------GEDRTIVSPISG---TT--------------------RDAIDT---EFT-G- 416 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll------g~~~~~~~~~~g---tt--------------------~~~~~~---~~~-~- 416 (484)
+..++++|++|+||||+++.|. |.++..+...+. .. .+.... .+. .
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5578999999999999999988 444443332211 00 000000 000 0
Q ss_pred CCCCcEEEEEcCCCccCccccCCCCchhHHH-HHHHHHHhhcCcEEEEEEeCcc
Q 011511 417 PEGQKFRLIDTAGIRKRAAIASSGSTTEALS-VNRAFRAIRRSDVVALVIEAMA 469 (484)
Q Consensus 417 ~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~l~V~~~~~ 469 (484)
..+..+++|||||..... .....+ ....+..+..+|.+++|+|+..
T Consensus 178 ~~~~D~ViIDTpg~~~~~-------~~~~l~~el~~i~~~~~~d~vllVvda~~ 224 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-------EEAALLEEMKNIYEAIKPDEVTLVIDASI 224 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-------CHHHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred hCCCCEEEEeCCCCcccc-------cHHHHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence 145679999999985410 111111 1111234457899999999864
No 478
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.42 E-value=0.0003 Score=64.07 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3478999999999999999999863
No 479
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.40 E-value=0.00041 Score=69.93 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=20.2
Q ss_pred CCEEEEEcCCCCCchhHHHhhh
Q 011511 371 IPAIAIVGRPNVGKSSILNALV 392 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll 392 (484)
...|+++|++|+||||+++.|.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999998
No 480
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.39 E-value=0.001 Score=70.19 Aligned_cols=137 Identities=17% Similarity=0.119 Sum_probs=73.5
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-+++++|++|+|||||++.|.|-..+ ..+.+.++|.++.-++. -|+... ....+..++.
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g~~~p------------~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q--~~~l~~~tv~ 434 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITRFYDI------------DEGHILMDGHDLREYTLASLRNQVALVSQ--NVHLFNDTVA 434 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTTTTCC------------SEEEEEETTEETTTBCHHHHHHTEEEECS--SCCCCSSBHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhhccCC------------CCCeEEECCEEccccCHHHHHhhCeEEcc--CCcCCCCCHH
Confidence 458999999999999999999986321 12444555543211110 111100 0111222444
Q ss_pred hhhhccc-CCCchhHHHHHHh------------------------hch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCccc
Q 011511 237 ITTTIGM-EGIPLATREAAVA------------------------RMP-SMIERQATAAIEESCVIIFLVDGQAGLTAAD 290 (484)
Q Consensus 237 ~~~~~~~-~G~~~~~~~~~v~------------------------~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~ 290 (484)
+.+.++. ++.+.+.+...++ +++ .+.++.+++.....+.-++++| +|.+..|
T Consensus 435 eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlD--Epts~LD 512 (582)
T 3b60_A 435 NNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILD--EATSALD 512 (582)
T ss_dssp HHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEE--TTTSSCC
T ss_pred HHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE--CccccCC
Confidence 5555554 3333333322222 221 3334555555555667788888 7888888
Q ss_pred HHHHH----HHHhhcCCCeEEEEecccCC
Q 011511 291 EEIAD----WLRKNYMDKFIILAVNKCES 315 (484)
Q Consensus 291 ~~~~~----~l~~~~~~~p~ilV~NK~Dl 315 (484)
..... .+.+...++.++++-+..+.
T Consensus 513 ~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 513 TESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 76443 33333246777777776543
No 481
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.38 E-value=0.00078 Score=68.64 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~ 186 (484)
.-.|+|+|.+|||||||++.|.|.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHH
Confidence 457999999999999999998753
No 482
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.38 E-value=0.0012 Score=61.61 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=22.2
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999863
No 483
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.35 E-value=0.00086 Score=62.77 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=22.3
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999999864
No 484
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.35 E-value=0.00051 Score=65.89 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.3
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhc
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVG 393 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg 393 (484)
.+..++++|++|+||||+++.|.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999874
No 485
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.35 E-value=0.00095 Score=70.40 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++++|++|+|||||++.|.|-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999999863
No 486
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.34 E-value=0.00013 Score=66.63 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhhcC
Q 011511 371 IPAIAIVGRPNVGKSSILNALVGE 394 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg~ 394 (484)
...|+++|.+|+|||||+|.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 487
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.33 E-value=0.00078 Score=68.12 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCEEEEEcCCCCCchhHHHhhh-------cCcceeecCCCCcee-----------------------cccce---eee-c
Q 011511 371 IPAIAIVGRPNVGKSSILNALV-------GEDRTIVSPISGTTR-----------------------DAIDT---EFT-G 416 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Ll-------g~~~~~~~~~~gtt~-----------------------~~~~~---~~~-~ 416 (484)
...|+++|++|+||||+...|. |+++..+...+.... +.... .+. .
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988 776665543331110 00000 000 0
Q ss_pred -CCCCcEEEEEcCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCccc
Q 011511 417 -PEGQKFRLIDTAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMAC 470 (484)
Q Consensus 417 -~~g~~i~liDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~ 470 (484)
..+..++||||||..... .... ........+..+|.+++|+|+...
T Consensus 180 ~~~~~D~VIIDTpG~l~~~------~~l~--~~L~~~~~~~~p~~vllVvda~~g 226 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVD------EAMM--DEIKQVHASINPVETLFVVDAMTG 226 (433)
T ss_dssp HHTTCSEEEEECCCCCTTC------HHHH--HHHHHHHHHSCCSEEEEEEETTBC
T ss_pred HhCCCCEEEEECCCccccc------HHHH--HHHHHHHHhhcCcceeEEeecchh
Confidence 145689999999975321 0111 111222345578999999998643
No 488
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.32 E-value=0.001 Score=70.31 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-.++|+|++|+|||||++.|.|-..+ ..+.+.++|.++.-++. -|+... ....+..++.
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~~~p------------~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q--~~~l~~~tv~ 435 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRLYDP------------ASGTISLDGHDIRQLNPVWLRSKIGTVSQ--EPILFSCSIA 435 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTSSCC------------SEEEEEETTEETTTBCHHHHHHSEEEECS--SCCCCSSBHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcCC------------CCcEEEECCEEhhhCCHHHHHhceEEEcc--CCcccCCCHH
Confidence 458999999999999999999986321 12444555533211110 111100 0011122444
Q ss_pred hhhhcccCC---CchhHHHHHHh------------------------hch-HHHHHHHHHHhhhcCeEEEEeeCCCCCCc
Q 011511 237 ITTTIGMEG---IPLATREAAVA------------------------RMP-SMIERQATAAIEESCVIIFLVDGQAGLTA 288 (484)
Q Consensus 237 ~~~~~~~~G---~~~~~~~~~v~------------------------~~~-~~~~~~~~~~~~~~d~vilVvD~~~~~~~ 288 (484)
+.+.++.+. ...+.+...++ +++ .+.++.+++.....+.-++++| +|.+.
T Consensus 436 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlD--Epts~ 513 (595)
T 2yl4_A 436 ENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLD--EATSA 513 (595)
T ss_dssp HHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEE--CCCSS
T ss_pred HHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEE--CcccC
Confidence 555555432 33333322221 221 3334555555555666678888 78888
Q ss_pred ccHHHHHH----HHhhcCCCeEEEEeccc
Q 011511 289 ADEEIADW----LRKNYMDKFIILAVNKC 313 (484)
Q Consensus 289 ~~~~~~~~----l~~~~~~~p~ilV~NK~ 313 (484)
.|...... +.+...++.++++-+..
T Consensus 514 LD~~~~~~i~~~l~~~~~~~tvi~itH~~ 542 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMDGRTVLVIAHRL 542 (595)
T ss_dssp CCHHHHHHHHHHHHHHHTTSEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 88764433 33332456666665544
No 489
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.32 E-value=0.0011 Score=69.84 Aligned_cols=136 Identities=15% Similarity=0.065 Sum_probs=74.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeec------cccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDT------GGVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDt------pG~~~~~~~~~~~~~~~~ 236 (484)
.-+++++|++|+|||||++.|.|... ...+.+.++|.++.-++. .|+.. .....+..++.
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~------------~~~G~i~i~g~~i~~~~~~~~r~~i~~v~--Q~~~lf~~tv~ 434 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLID------------PERGRVEVDELDVRTVKLKDLRGHISAVP--QETVLFSGTIK 434 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSC------------CSEEEEEESSSBGGGBCHHHHHHHEEEEC--SSCCCCSEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcc------------CCCcEEEECCEEcccCCHHHHHhheEEEC--CCCcCcCccHH
Confidence 45899999999999999999998632 123445555554322221 11110 01112223455
Q ss_pred hhhhcccCCCchhHHHHHHh------------------------hc-hHHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 237 ITTTIGMEGIPLATREAAVA------------------------RM-PSMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~------------------------~~-~~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
+.+.++.+....+.+....+ ++ ..+.++.+++.....+.-++++| +|.+..|.
T Consensus 435 eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlD--Epts~LD~ 512 (587)
T 3qf4_A 435 ENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILD--DCTSSVDP 512 (587)
T ss_dssp HHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEE--SCCTTSCH
T ss_pred HHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEE--CCcccCCH
Confidence 55555555443333322211 12 12233555555555677777888 78888887
Q ss_pred HHHH----HHHhhcCCCeEEEEecccC
Q 011511 292 EIAD----WLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 292 ~~~~----~l~~~~~~~p~ilV~NK~D 314 (484)
.... .+.+...++.+++|.+..+
T Consensus 513 ~~~~~i~~~l~~~~~~~tvi~itH~l~ 539 (587)
T 3qf4_A 513 ITEKRILDGLKRYTKGCTTFIITQKIP 539 (587)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEESCHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEecChH
Confidence 6443 3443334677777776653
No 490
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.25 E-value=0.0056 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999863
No 491
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.25 E-value=0.0012 Score=62.09 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCc
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGN 187 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~ 187 (484)
.-.++|+|++|+|||||++.|.|..
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999999863
No 492
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.25 E-value=0.00075 Score=77.83 Aligned_cols=136 Identities=21% Similarity=0.214 Sum_probs=81.6
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecc------ccccccCCCchhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTG------GVLNVSKSQPNIMEDLA 236 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtp------G~~~~~~~~~~~~~~~~ 236 (484)
.-.++|+|++|+|||||++.|.|.- +...+.+.++|.++.-++.. |+.. .....+..++.
T Consensus 444 G~~vaivG~sGsGKSTll~ll~~~~------------~~~~G~I~idG~~i~~~~~~~lr~~i~~v~--Q~~~Lf~~TI~ 509 (1321)
T 4f4c_A 444 GQTVALVGSSGCGKSTIISLLLRYY------------DVLKGKITIDGVDVRDINLEFLRKNVAVVS--QEPALFNCTIE 509 (1321)
T ss_dssp TCEEEEEECSSSCHHHHHHHHTTSS------------CCSEEEEEETTEETTTSCHHHHHHHEEEEC--SSCCCCSEEHH
T ss_pred CcEEEEEecCCCcHHHHHHHhcccc------------ccccCcccCCCccchhccHHHHhhcccccC--CcceeeCCchh
Confidence 4589999999999999999999863 22345666776554333322 2211 12233455677
Q ss_pred hhhhcccCCCchhHHHHHHhhc--h-----------------------HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 237 ITTTIGMEGIPLATREAAVARM--P-----------------------SMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 237 ~~~~~~~~G~~~~~~~~~v~~~--~-----------------------~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
.-+.||.+..+.+.+....+.. . ++..|.+++.....+.-|+++| ++.+..|.
T Consensus 510 eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLD--E~tSaLD~ 587 (1321)
T 4f4c_A 510 ENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLD--EATSALDA 587 (1321)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEE--STTTTSCT
T ss_pred HHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEe--cccccCCH
Confidence 7777887777666655444332 1 1222555555555566677788 55555554
Q ss_pred H----HHHHHHhhcCCCeEEEEecccC
Q 011511 292 E----IADWLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 292 ~----~~~~l~~~~~~~p~ilV~NK~D 314 (484)
+ +.+.+.....++.+++|.++..
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 3 3344444446788888877654
No 493
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.24 E-value=0.001 Score=66.90 Aligned_cols=101 Identities=17% Similarity=0.100 Sum_probs=58.0
Q ss_pred CCEEEEEcCCCCCchhHHHhhhc-----------------CcceeecCCCCceecccceee-----ecCCCC--cEEEEE
Q 011511 371 IPAIAIVGRPNVGKSSILNALVG-----------------EDRTIVSPISGTTRDAIDTEF-----TGPEGQ--KFRLID 426 (484)
Q Consensus 371 ~~~i~lvG~~g~GKSTLiN~Llg-----------------~~~~~~~~~~gtt~~~~~~~~-----~~~~g~--~i~liD 426 (484)
...|+++|..++|||+|+|.|++ ...|.++.....++..+.... ...+|. .|+|+|
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllD 146 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMD 146 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEE
T ss_pred eEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEe
Confidence 34789999999999999997762 245666544433333322211 123444 499999
Q ss_pred cCCCccCccccCCCCchhHHHHHHHHHHhhcCcEEEEEEeCcccccHHhhhhhh
Q 011511 427 TAGIRKRAAIASSGSTTEALSVNRAFRAIRRSDVVALVIEAMACITEQADWRDH 480 (484)
Q Consensus 427 TPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~V~~~~~~~~~~d~~~~~ 480 (484)
|.|+.+... .......-....+--+.++|| +..+.+.+++..-|+
T Consensus 147 TEG~~d~~~-------~~~~d~~ifaLa~LLSS~~Iy--N~~~~i~~~~L~~L~ 191 (457)
T 4ido_A 147 TQGTFDSQS-------TLRDSATVFALSTMISSIQVY--NLSQNVQEDDLQHLQ 191 (457)
T ss_dssp ECCBTCTTC-------CHHHHHHHHHHHHHHCSEEEE--EEESSCCHHHHHHHH
T ss_pred ccCCCCccc-------CccccHHHHHHHHHHhhheee--cccccCCHHHHHHHH
Confidence 999976532 111111111123334566554 445678887766553
No 494
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.23 E-value=5.5e-05 Score=67.91 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=42.1
Q ss_pred CCCCCCeEEEEcCCCCChhHHHHHHhCCcc-eeeecCCCceeeeeEEEEEeCCceeeEeecccccc
Q 011511 159 PEHLLPRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN 223 (484)
Q Consensus 159 ~~~~~~~V~l~G~~~~GKSsl~n~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~ 223 (484)
+......|+|+|++|||||||+++|++... ........+|+....+. .+|..+.++|...+..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~ 78 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTR 78 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhh
Confidence 333456799999999999999999987532 23334445555554332 5677777888776643
No 495
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.16 E-value=0.00028 Score=69.29 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=35.3
Q ss_pred CeEEEEcCCCCChhHHHHHHhCCcc-eeeecCC---C----ceeeeeEEEEEeCCceeeEeeccccccc
Q 011511 164 PRVAIVGRPNVGKSALFNRLVGGNR-AIVVDEP---G----VTRDRMYGRSFWGEHEFMLVDTGGVLNV 224 (484)
Q Consensus 164 ~~V~l~G~~~~GKSsl~n~l~~~~~-~~~~~~~---~----~t~~~~~~~~~~~~~~i~liDtpG~~~~ 224 (484)
-.++|+|++|||||||+|.|.|... ...+... + +|..... ..+ .....++||||+..+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i--~~v-~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARL--YHF-PHGGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEE--EEC-TTSCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEE--EEE-CCCCEecCcccHHHh
Confidence 4799999999999999999998754 3222211 1 2222211 122 223468999998653
No 496
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.16 E-value=0.0039 Score=59.88 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCCEEEEEcCCCCCchhHHHhhhc
Q 011511 370 RIPAIAIVGRPNVGKSSILNALVG 393 (484)
Q Consensus 370 ~~~~i~lvG~~g~GKSTLiN~Llg 393 (484)
.+..++++|+||+|||||++.|.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 466899999999999999999986
No 497
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.15 E-value=0.0011 Score=67.06 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChhHHHHHHh
Q 011511 162 LLPRVAIVGRPNVGKSALFNRLV 184 (484)
Q Consensus 162 ~~~~V~l~G~~~~GKSsl~n~l~ 184 (484)
....|+++|.+|+||||+...|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999887
No 498
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.15 E-value=0.001 Score=62.13 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCC
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGG 186 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~ 186 (484)
.-.++|+|++|+|||||++.|.|.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 447999999999999999999985
No 499
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.12 E-value=0.00024 Score=68.24 Aligned_cols=96 Identities=14% Similarity=0.146 Sum_probs=64.0
Q ss_pred HHhhcCCCeEEEEecccCCCchhhhhhHHHHhcCCCceeeecccCCCCchhhHHHHHHhhhccCcchhhhhccCCCEEEE
Q 011511 297 LRKNYMDKFIILAVNKCESPRKGIMQVSEFWSLGFSPLPISAISGTGTGELLDLVCSELKKVEGTEDLVEEENRIPAIAI 376 (484)
Q Consensus 297 l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~i~vSa~~g~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~i~l 376 (484)
+.+.+...+..+|++|.|.+++...+.. ...+++++.++..+...+..+..++...+.......... -...+..+++
T Consensus 73 ler~l~~~~P~IIltrg~~~peelie~A--~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~-v~~~g~~vl~ 149 (314)
T 1ko7_A 73 MRKLCRPETPAIIVTRDLEPPEELIEAA--KEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVL-VDVYGVGVLI 149 (314)
T ss_dssp HHHHCCTTCCCEEECTTCCCCHHHHHHH--HHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEE-EEETTEEEEE
T ss_pred HHHHhcCCCCEEEEeCCCCCCHHHHHHH--HHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEE-EEECCEEEEE
Confidence 4444444555677889988766544332 234889999998888888888888776543321111100 1113457999
Q ss_pred EcCCCCCchhHHHhhhcCc
Q 011511 377 VGRPNVGKSSILNALVGED 395 (484)
Q Consensus 377 vG~~g~GKSTLiN~Llg~~ 395 (484)
+|.+|+||||+.+.|+++-
T Consensus 150 ~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 150 TGDSGIGKSETALELIKRG 168 (314)
T ss_dssp EESTTSSHHHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHhcC
Confidence 9999999999999999753
No 500
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.06 E-value=0.0011 Score=76.50 Aligned_cols=138 Identities=21% Similarity=0.212 Sum_probs=73.1
Q ss_pred CCeEEEEcCCCCChhHHHHHHhCCcceeeecCCCceeeeeEEEEEeCCceeeEeecccccc----ccCCCchhhhhhhhh
Q 011511 163 LPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGVLN----VSKSQPNIMEDLAIT 238 (484)
Q Consensus 163 ~~~V~l~G~~~~GKSsl~n~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDtpG~~~----~~~~~~~~~~~~~~~ 238 (484)
.-+|+|+|++|+|||||++.|.+--. + ..+.+.++|.++.-++...+.+ -+..+..+..++..-
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~----p--------~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1172 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYD----T--------LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSC----C--------SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHhcCcc----C--------CCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHH
Confidence 45899999999999999999997521 1 1233455554433222211100 011112233345555
Q ss_pred hhcccC--CCchhHHHHHHhhc---------h----------------HHHHHHHHHHhhhcCeEEEEeeCCCCCCcccH
Q 011511 239 TTIGME--GIPLATREAAVARM---------P----------------SMIERQATAAIEESCVIIFLVDGQAGLTAADE 291 (484)
Q Consensus 239 ~~~~~~--G~~~~~~~~~v~~~---------~----------------~~~~~~~~~~~~~~d~vilVvD~~~~~~~~~~ 291 (484)
+.||++ .++.+++....+.. + ++.++.+++...--+.-|+++| ++.+..|.
T Consensus 1173 I~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLD--EaTSaLD~ 1250 (1321)
T 4f4c_A 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLD--EATSALDT 1250 (1321)
T ss_dssp HSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEE--SCCCSTTS
T ss_pred HhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEe--CccccCCH
Confidence 555532 34444433322221 1 1222444444333455577888 66666665
Q ss_pred HHH----HHHHhhcCCCeEEEEecccC
Q 011511 292 EIA----DWLRKNYMDKFIILAVNKCE 314 (484)
Q Consensus 292 ~~~----~~l~~~~~~~p~ilV~NK~D 314 (484)
+.. +.+.+...++.+++|.++..
T Consensus 1251 ~tE~~Iq~~l~~~~~~~TvI~IAHRLs 1277 (1321)
T 4f4c_A 1251 ESEKVVQEALDRAREGRTCIVIAHRLN 1277 (1321)
T ss_dssp HHHHHHHHHHTTTSSSSEEEEECSSSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeccCHH
Confidence 544 34444456788888888764
Done!