Query 011513
Match_columns 484
No_of_seqs 180 out of 1411
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 02:11:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1237 H+/oligopeptide sympor 100.0 5.6E-68 1.2E-72 558.7 28.8 449 2-467 119-570 (571)
2 COG3104 PTR2 Dipeptide/tripept 100.0 3.4E-48 7.3E-53 390.0 23.8 368 32-466 115-496 (498)
3 TIGR00926 2A1704 Peptide:H+ sy 100.0 9.5E-41 2.1E-45 358.2 31.5 364 33-460 84-654 (654)
4 PRK15462 dipeptide/tripeptide 100.0 6E-40 1.3E-44 341.3 29.9 370 35-466 101-488 (493)
5 PF00854 PTR2: POT family; In 100.0 1.1E-42 2.5E-47 354.7 7.7 352 2-401 16-371 (372)
6 PRK10207 dipeptide/tripeptide 100.0 5.3E-37 1.2E-41 322.9 30.8 370 36-470 107-489 (489)
7 TIGR00924 yjdL_sub1_fam amino 100.0 4.3E-36 9.3E-41 315.5 30.0 361 34-463 102-474 (475)
8 PRK09584 tppB putative tripept 100.0 3.2E-35 7E-40 310.7 29.2 369 34-470 112-492 (500)
9 PRK10489 enterobactin exporter 99.5 1E-12 2.2E-17 136.1 23.6 308 33-474 109-416 (417)
10 PRK11646 multidrug resistance 99.4 6.8E-12 1.5E-16 129.3 20.4 289 33-455 98-386 (400)
11 PRK05122 major facilitator sup 99.4 8.5E-11 1.8E-15 120.8 26.8 278 33-456 111-388 (399)
12 PRK15402 multidrug efflux syst 99.4 1.2E-10 2.6E-15 120.1 25.8 85 33-123 100-184 (406)
13 PRK03545 putative arabinose tr 99.4 5.4E-11 1.2E-15 122.0 22.6 286 32-458 95-381 (390)
14 PRK11551 putative 3-hydroxyphe 99.4 9.9E-11 2.1E-15 120.5 23.8 85 33-123 102-186 (406)
15 TIGR00893 2A0114 d-galactonate 99.4 1.3E-10 2.9E-15 117.7 23.5 86 33-124 81-166 (399)
16 PRK09874 drug efflux system pr 99.4 7.6E-11 1.7E-15 121.2 21.7 293 33-457 106-398 (408)
17 TIGR00902 2A0127 phenyl propri 99.3 2.3E-10 4.9E-15 117.2 24.0 282 32-452 92-374 (382)
18 PF05977 MFS_3: Transmembrane 99.3 2.2E-10 4.8E-15 121.4 24.4 267 32-415 101-368 (524)
19 TIGR00900 2A0121 H+ Antiporter 99.3 1.1E-10 2.3E-15 117.6 20.2 269 33-415 91-362 (365)
20 PRK10054 putative transporter; 99.3 6.5E-11 1.4E-15 121.8 18.9 261 34-416 96-359 (395)
21 PRK11128 putative 3-phenylprop 99.3 3.1E-10 6.7E-15 116.2 23.7 262 32-415 92-354 (382)
22 TIGR00894 2A0114euk Na(+)-depe 99.3 5.1E-10 1.1E-14 117.6 25.6 84 34-123 131-215 (465)
23 PF07690 MFS_1: Major Facilita 99.3 9.6E-11 2.1E-15 117.4 17.5 266 33-407 84-352 (352)
24 PRK06814 acylglycerophosphoeth 99.3 2.5E-10 5.3E-15 133.1 22.4 288 32-414 106-394 (1140)
25 cd06174 MFS The Major Facilita 99.3 4.5E-10 9.7E-15 112.0 21.3 263 32-454 85-349 (352)
26 PRK12382 putative transporter; 99.3 9.6E-10 2.1E-14 112.7 24.1 277 32-455 110-387 (392)
27 TIGR00879 SP MFS transporter, 99.3 7E-10 1.5E-14 115.6 23.2 85 33-123 126-213 (481)
28 PRK10504 putative transporter; 99.3 9.2E-10 2E-14 115.8 24.2 87 33-125 97-183 (471)
29 PRK14995 methyl viologen resis 99.2 7.3E-10 1.6E-14 117.5 21.9 310 32-414 92-411 (495)
30 TIGR00892 2A0113 monocarboxyla 99.2 2.2E-10 4.7E-15 120.2 17.5 285 34-415 107-394 (455)
31 TIGR00711 efflux_EmrB drug res 99.2 7.8E-10 1.7E-14 116.5 21.5 308 33-414 89-408 (485)
32 PRK11010 ampG muropeptide tran 99.2 3.6E-09 7.8E-14 112.1 25.3 86 32-123 105-191 (491)
33 KOG2532 Permease of the major 99.2 6.4E-10 1.4E-14 116.0 18.9 304 35-457 129-447 (466)
34 TIGR00899 2A0120 sugar efflux 99.2 4.1E-09 8.8E-14 106.9 23.4 88 33-124 86-173 (375)
35 PRK10077 xylE D-xylose transpo 99.2 2.6E-09 5.7E-14 112.4 22.6 86 31-122 117-210 (479)
36 TIGR00710 efflux_Bcr_CflA drug 99.2 1E-08 2.2E-13 104.3 24.8 87 33-125 92-178 (385)
37 PRK12307 putative sialic acid 99.2 5.5E-09 1.2E-13 108.2 23.2 78 32-115 104-181 (426)
38 TIGR00890 2A0111 Oxalate/Forma 99.1 1.9E-09 4.2E-14 108.7 18.6 86 32-124 89-174 (377)
39 PRK15011 sugar efflux transpor 99.1 6.5E-09 1.4E-13 106.8 22.7 74 47-124 118-191 (393)
40 TIGR00895 2A0115 benzoate tran 99.1 9.8E-09 2.1E-13 104.5 23.4 85 33-123 104-188 (398)
41 PRK11663 regulatory protein Uh 99.1 9.5E-09 2.1E-13 107.1 23.5 83 33-121 110-192 (434)
42 TIGR00901 2A0125 AmpG-related 99.1 6.5E-09 1.4E-13 105.1 21.4 86 33-124 82-175 (356)
43 PRK15403 multidrug efflux syst 99.1 8.5E-09 1.8E-13 106.8 22.4 86 32-123 102-187 (413)
44 PRK10213 nepI ribonucleoside t 99.1 1.3E-08 2.7E-13 104.8 23.4 83 32-120 106-188 (394)
45 PRK11195 lysophospholipid tran 99.1 1.2E-08 2.7E-13 104.9 22.4 76 38-120 92-167 (393)
46 PRK11102 bicyclomycin/multidru 99.1 2.3E-08 5E-13 101.7 24.3 86 33-124 78-163 (377)
47 PRK09705 cynX putative cyanate 99.1 1.6E-08 3.5E-13 104.0 23.1 81 33-120 96-177 (393)
48 KOG1330 Sugar transporter/spin 99.1 4.8E-10 1E-14 113.0 11.3 88 32-125 119-207 (493)
49 PRK11273 glpT sn-glycerol-3-ph 99.1 2E-08 4.4E-13 105.2 23.9 85 33-123 119-204 (452)
50 PRK10473 multidrug efflux syst 99.1 2E-08 4.3E-13 103.0 23.1 86 33-124 90-175 (392)
51 PRK03633 putative MFS family t 99.1 3.3E-08 7.2E-13 101.1 24.2 68 33-106 93-160 (381)
52 PRK03893 putative sialic acid 99.1 1.1E-08 2.3E-13 108.3 21.0 78 33-116 107-184 (496)
53 PRK10091 MFS transport protein 99.1 2.3E-08 5E-13 102.3 22.4 85 32-122 89-173 (382)
54 TIGR00903 2A0129 major facilit 99.1 2.4E-08 5.2E-13 101.8 22.2 84 33-123 78-161 (368)
55 TIGR00792 gph sugar (Glycoside 99.0 1.6E-08 3.5E-13 105.0 20.4 267 33-417 98-381 (437)
56 PRK09528 lacY galactoside perm 99.0 8.6E-09 1.9E-13 106.8 18.3 137 269-456 265-402 (420)
57 PRK10642 proline/glycine betai 99.0 7E-08 1.5E-12 102.3 25.6 77 35-117 119-203 (490)
58 PRK03699 putative transporter; 99.0 5.2E-08 1.1E-12 100.1 23.4 84 33-122 94-178 (394)
59 PRK11043 putative transporter; 99.0 7.3E-08 1.6E-12 99.1 24.4 85 33-123 93-177 (401)
60 PRK11652 emrD multidrug resist 99.0 4.6E-08 1E-12 100.3 22.8 84 33-122 95-178 (394)
61 PRK09556 uhpT sugar phosphate 99.0 2.7E-08 5.9E-13 104.7 21.5 86 32-123 120-208 (467)
62 PRK10406 alpha-ketoglutarate t 99.0 7.9E-08 1.7E-12 100.1 24.5 81 33-119 123-211 (432)
63 TIGR00898 2A0119 cation transp 99.0 5.8E-08 1.3E-12 103.1 23.7 82 33-123 179-260 (505)
64 PRK08633 2-acyl-glycerophospho 99.0 4.1E-08 8.8E-13 114.6 24.5 268 33-414 102-382 (1146)
65 PRK11902 ampG muropeptide tran 99.0 1.4E-07 2.9E-12 97.3 25.0 84 33-122 93-177 (402)
66 TIGR00889 2A0110 nucleoside tr 99.0 8.8E-08 1.9E-12 99.4 23.6 150 269-459 254-404 (418)
67 TIGR00883 2A0106 metabolite-pr 99.0 9.1E-08 2E-12 97.1 23.3 82 34-121 96-185 (394)
68 COG2814 AraJ Arabinose efflux 99.0 1.2E-07 2.5E-12 95.8 22.5 89 31-125 98-186 (394)
69 PRK09952 shikimate transporter 99.0 1.7E-07 3.6E-12 97.9 24.6 79 34-118 125-211 (438)
70 TIGR00788 fbt folate/biopterin 99.0 1.2E-08 2.6E-13 107.4 15.9 83 36-122 122-204 (468)
71 TIGR00881 2A0104 phosphoglycer 98.9 3.7E-08 8E-13 99.4 17.8 86 33-124 82-168 (379)
72 COG2271 UhpC Sugar phosphate p 98.9 3.8E-08 8.3E-13 98.5 16.9 86 33-124 116-203 (448)
73 TIGR00712 glpT glycerol-3-phos 98.9 1.2E-07 2.6E-12 98.9 21.5 86 33-124 117-203 (438)
74 PRK09848 glucuronide transport 98.9 5E-08 1.1E-12 102.1 18.5 91 305-417 292-389 (448)
75 TIGR00882 2A0105 oligosacchari 98.9 1.8E-07 3.9E-12 96.1 21.6 285 36-452 101-390 (396)
76 PF13347 MFS_2: MFS/sugar tran 98.9 1.8E-07 3.9E-12 97.3 21.6 269 33-417 102-385 (428)
77 TIGR00891 2A0112 putative sial 98.9 8.1E-08 1.8E-12 98.2 18.6 82 33-120 99-182 (405)
78 TIGR00897 2A0118 polyol permea 98.9 9.8E-07 2.1E-11 91.0 26.6 76 33-114 104-180 (402)
79 TIGR01301 GPH_sucrose GPH fami 98.9 4.8E-07 1E-11 94.7 23.9 333 34-459 114-473 (477)
80 TIGR01299 synapt_SV2 synaptic 98.9 5.9E-07 1.3E-11 98.9 25.3 85 33-123 254-351 (742)
81 PRK15075 citrate-proton sympor 98.9 5.5E-07 1.2E-11 93.8 24.2 73 36-114 119-199 (434)
82 TIGR02332 HpaX 4-hydroxyphenyl 98.8 4.9E-07 1.1E-11 93.6 21.6 86 33-124 95-186 (412)
83 PRK09669 putative symporter Ya 98.8 2.9E-07 6.2E-12 96.3 19.3 65 354-418 319-390 (444)
84 TIGR00887 2A0109 phosphate:H+ 98.8 5.7E-07 1.2E-11 95.6 21.8 83 33-121 114-219 (502)
85 PLN00028 nitrate transmembrane 98.8 6.2E-07 1.3E-11 94.7 21.1 85 33-124 123-216 (476)
86 TIGR00896 CynX cyanate transpo 98.8 6.2E-07 1.3E-11 90.6 20.3 80 33-119 86-167 (355)
87 PRK10429 melibiose:sodium symp 98.8 3.7E-07 8E-12 96.3 18.5 118 271-418 271-395 (473)
88 TIGR02718 sider_RhtX_FptX side 98.7 2.3E-06 4.9E-11 87.7 23.1 80 39-124 102-181 (390)
89 TIGR01272 gluP glucose/galacto 98.7 3E-06 6.4E-11 84.4 21.4 87 31-123 7-109 (310)
90 PF03209 PUCC: PUCC protein; 98.5 3.6E-05 7.8E-10 77.6 24.4 276 27-417 82-364 (403)
91 KOG3764 Vesicular amine transp 98.5 3.3E-06 7.1E-11 84.1 16.4 88 33-125 158-245 (464)
92 TIGR00805 oat sodium-independe 98.5 1.8E-05 3.8E-10 86.5 23.0 87 33-125 171-279 (633)
93 PRK10133 L-fucose transporter; 98.5 1.6E-05 3.6E-10 83.0 20.9 62 32-99 115-176 (438)
94 TIGR00926 2A1704 Peptide:H+ sy 98.5 3.7E-06 8E-11 91.5 16.2 254 32-335 80-343 (654)
95 KOG1330 Sugar transporter/spin 98.4 6.6E-07 1.4E-11 90.7 7.2 140 269-458 71-210 (493)
96 KOG2533 Permease of the major 98.4 0.00016 3.6E-09 76.0 24.9 88 32-125 132-225 (495)
97 PRK03545 putative arabinose tr 98.3 3.8E-05 8.2E-10 78.7 18.5 134 269-453 47-180 (390)
98 PF07690 MFS_1: Major Facilita 98.3 3.5E-05 7.5E-10 77.0 16.7 133 269-452 35-167 (352)
99 COG2814 AraJ Arabinose efflux 98.2 5.1E-05 1.1E-09 76.9 17.3 139 268-458 50-189 (394)
100 TIGR00885 fucP L-fucose:H+ sym 98.2 8.6E-05 1.9E-09 76.9 19.6 85 32-122 92-202 (410)
101 TIGR00710 efflux_Bcr_CflA drug 98.2 6.8E-05 1.5E-09 76.1 18.5 137 269-456 43-179 (385)
102 PRK11462 putative transporter; 98.2 0.00012 2.6E-09 77.0 20.6 86 34-124 109-201 (460)
103 TIGR02332 HpaX 4-hydroxyphenyl 98.2 9.5E-05 2E-09 76.6 19.4 142 269-455 46-187 (412)
104 TIGR00886 2A0108 nitrite extru 98.2 1.7E-05 3.7E-10 80.1 13.0 81 33-120 90-181 (366)
105 PRK11551 putative 3-hydroxyphe 98.2 0.00012 2.6E-09 75.2 19.3 112 268-414 52-163 (406)
106 TIGR00893 2A0114 d-galactonate 98.2 6E-05 1.3E-09 76.1 16.1 137 269-456 32-168 (399)
107 PRK14995 methyl viologen resis 98.2 0.00025 5.4E-09 75.3 21.4 113 268-415 43-156 (495)
108 TIGR00711 efflux_EmrB drug res 98.1 0.00011 2.4E-09 77.3 18.2 113 268-415 39-151 (485)
109 PF03825 Nuc_H_symport: Nucleo 98.1 0.00045 9.8E-09 71.2 21.9 127 304-459 270-397 (400)
110 PRK11663 regulatory protein Uh 98.1 0.0002 4.3E-09 74.7 19.6 112 269-415 61-172 (434)
111 PRK10213 nepI ribonucleoside t 98.1 0.00033 7.2E-09 72.0 20.4 112 269-415 58-169 (394)
112 PF11700 ATG22: Vacuole efflux 98.1 0.0015 3.3E-08 68.8 25.4 80 361-455 387-466 (477)
113 PRK10091 MFS transport protein 98.1 0.00026 5.6E-09 72.4 19.0 134 268-452 40-173 (382)
114 TIGR00900 2A0121 H+ Antiporter 98.1 0.00029 6.4E-09 70.5 18.9 117 269-415 37-153 (365)
115 PRK11646 multidrug resistance 98.1 0.00025 5.3E-09 73.2 18.7 110 270-414 50-159 (400)
116 PRK10054 putative transporter; 98.1 0.00023 5E-09 73.2 18.4 112 268-414 45-156 (395)
117 TIGR00881 2A0104 phosphoglycer 98.1 4.4E-05 9.6E-10 76.9 12.7 138 269-457 33-171 (379)
118 PF01306 LacY_symp: LacY proto 98.1 0.00019 4.2E-09 73.4 17.1 92 352-459 310-402 (412)
119 COG2807 CynX Cyanate permease 98.1 0.00066 1.4E-08 67.3 20.0 85 33-124 98-183 (395)
120 KOG3764 Vesicular amine transp 98.0 1.6E-05 3.5E-10 79.2 8.6 146 268-464 108-254 (464)
121 TIGR00891 2A0112 putative sial 98.0 0.00024 5.2E-09 72.4 17.9 113 268-415 49-161 (405)
122 TIGR00880 2_A_01_02 Multidrug 98.0 0.00027 5.8E-09 60.0 15.4 107 273-414 5-111 (141)
123 KOG3626 Organic anion transpor 98.0 0.00078 1.7E-08 73.0 21.8 92 32-129 235-345 (735)
124 KOG2504 Monocarboxylate transp 98.0 0.00023 4.9E-09 75.6 17.6 119 307-464 365-483 (509)
125 PRK15034 nitrate/nitrite trans 98.0 0.00052 1.1E-08 71.7 19.9 60 32-98 126-185 (462)
126 COG2223 NarK Nitrate/nitrite t 98.0 0.00024 5.1E-09 71.7 15.8 87 35-129 106-195 (417)
127 KOG3762 Predicted transporter 97.9 0.0002 4.4E-09 74.1 14.2 159 269-478 409-568 (618)
128 PRK09874 drug efflux system pr 97.9 0.00099 2.1E-08 68.3 19.8 136 269-456 57-192 (408)
129 COG2211 MelB Na+/melibiose sym 97.9 0.00048 1E-08 71.4 17.0 88 307-416 302-396 (467)
130 TIGR00885 fucP L-fucose:H+ sym 97.9 0.00097 2.1E-08 69.0 19.5 115 268-414 40-154 (410)
131 PRK10473 multidrug efflux syst 97.9 0.001 2.2E-08 68.1 19.4 135 269-454 41-175 (392)
132 TIGR00712 glpT glycerol-3-phos 97.9 0.00061 1.3E-08 71.1 17.8 144 269-458 64-207 (438)
133 PRK10504 putative transporter; 97.9 0.00088 1.9E-08 70.4 19.1 137 269-456 48-184 (471)
134 TIGR00895 2A0115 benzoate tran 97.9 0.0002 4.2E-09 72.8 13.6 112 269-415 55-166 (398)
135 PF03092 BT1: BT1 family; Int 97.9 0.00041 8.8E-09 72.4 15.9 88 34-125 86-173 (433)
136 PRK03699 putative transporter; 97.9 0.0012 2.7E-08 67.7 19.2 111 269-414 45-155 (394)
137 COG2271 UhpC Sugar phosphate p 97.9 0.00027 5.9E-09 71.4 13.6 116 304-459 91-208 (448)
138 PRK12307 putative sialic acid 97.8 0.00098 2.1E-08 68.9 18.4 111 269-414 56-166 (426)
139 TIGR01301 GPH_sucrose GPH fami 97.8 0.00084 1.8E-08 70.5 17.8 212 222-461 4-222 (477)
140 PRK11102 bicyclomycin/multidru 97.8 0.00068 1.5E-08 68.8 16.9 136 269-455 29-164 (377)
141 PRK15403 multidrug efflux syst 97.8 0.0014 3E-08 68.0 19.3 134 269-453 54-187 (413)
142 PRK09556 uhpT sugar phosphate 97.8 0.00046 9.9E-09 72.7 15.7 147 269-458 67-213 (467)
143 TIGR00894 2A0114euk Na(+)-depe 97.8 0.00024 5.2E-09 74.6 13.3 140 269-456 79-218 (465)
144 PRK15402 multidrug efflux syst 97.8 0.0023 5E-08 65.8 20.4 133 269-452 51-183 (406)
145 PRK03633 putative MFS family t 97.8 0.0028 6.1E-08 64.6 20.7 112 268-414 43-154 (381)
146 TIGR00886 2A0108 nitrite extru 97.8 0.0024 5.2E-08 64.3 19.2 111 268-413 39-149 (366)
147 PRK11273 glpT sn-glycerol-3-ph 97.7 0.0025 5.4E-08 66.8 19.6 110 269-409 66-176 (452)
148 PRK12382 putative transporter; 97.7 0.0016 3.5E-08 66.5 17.9 119 269-414 54-172 (392)
149 TIGR00806 rfc RFC reduced fola 97.7 0.0071 1.5E-07 62.9 22.1 83 306-413 91-173 (511)
150 TIGR00879 SP MFS transporter, 97.7 0.0007 1.5E-08 70.4 15.2 110 269-410 74-183 (481)
151 KOG2533 Permease of the major 97.7 0.00051 1.1E-08 72.4 13.8 100 353-462 133-232 (495)
152 TIGR00903 2A0129 major facilit 97.7 0.0014 2.9E-08 67.0 16.4 88 353-457 78-165 (368)
153 PRK09705 cynX putative cyanate 97.7 0.0021 4.5E-08 66.0 17.8 111 268-414 46-156 (393)
154 KOG2615 Permease of the major 97.7 0.00047 1E-08 68.7 12.1 58 357-414 355-412 (451)
155 TIGR00890 2A0111 Oxalate/Forma 97.7 0.0014 3E-08 65.9 16.1 137 268-456 40-176 (377)
156 cd06174 MFS The Major Facilita 97.7 0.0015 3.2E-08 64.8 16.1 112 269-415 37-148 (352)
157 KOG4686 Predicted sugar transp 97.7 0.0019 4.1E-08 61.9 15.5 309 32-459 134-445 (459)
158 TIGR01299 synapt_SV2 synaptic 97.7 0.0051 1.1E-07 68.2 21.3 111 269-414 205-315 (742)
159 TIGR00924 yjdL_sub1_fam amino 97.7 0.0017 3.8E-08 68.6 17.1 143 269-461 51-196 (475)
160 PF06609 TRI12: Fungal trichot 97.7 0.0081 1.8E-07 64.5 22.0 90 29-125 126-215 (599)
161 PRK11652 emrD multidrug resist 97.7 0.004 8.7E-08 63.7 19.3 112 269-415 46-157 (394)
162 PRK03893 putative sialic acid 97.6 0.0047 1E-07 65.3 20.2 111 269-414 58-168 (496)
163 PRK05122 major facilitator sup 97.6 0.0019 4.2E-08 66.1 16.7 120 268-414 53-172 (399)
164 PRK11010 ampG muropeptide tran 97.6 0.0028 6.1E-08 67.2 17.7 107 310-452 84-190 (491)
165 PRK10489 enterobactin exporter 97.6 0.0022 4.7E-08 66.3 16.5 118 268-415 54-171 (417)
166 TIGR00805 oat sodium-independe 97.6 0.00086 1.9E-08 73.4 13.9 137 268-415 70-233 (633)
167 PRK11195 lysophospholipid tran 97.6 0.0019 4.1E-08 66.4 15.7 109 268-414 40-148 (393)
168 TIGR00897 2A0118 polyol permea 97.6 0.0067 1.5E-07 62.4 19.6 116 268-414 50-166 (402)
169 COG0738 FucP Fucose permease [ 97.6 0.016 3.4E-07 58.6 21.0 66 30-101 100-165 (422)
170 PRK11043 putative transporter; 97.5 0.0072 1.6E-07 62.0 19.4 112 269-415 44-155 (401)
171 PRK10207 dipeptide/tripeptide 97.5 0.0033 7.1E-08 66.7 16.8 86 307-415 81-168 (489)
172 TIGR00892 2A0113 monocarboxyla 97.5 0.0046 9.9E-08 64.9 17.1 136 269-456 57-193 (455)
173 PRK09584 tppB putative tripept 97.5 0.0048 1E-07 65.7 17.2 117 308-463 89-207 (500)
174 COG2270 Permeases of the major 97.5 0.017 3.7E-07 58.7 19.7 87 308-418 319-405 (438)
175 PRK10133 L-fucose transporter; 97.4 0.017 3.6E-07 60.4 20.5 113 269-413 64-176 (438)
176 TIGR00898 2A0119 cation transp 97.4 0.0016 3.4E-08 69.2 13.0 132 269-454 130-261 (505)
177 TIGR00901 2A0125 AmpG-related 97.4 0.0062 1.3E-07 61.3 16.5 63 353-415 82-144 (356)
178 TIGR00887 2A0109 phosphate:H+ 97.4 0.0032 6.9E-08 66.9 14.8 116 270-414 60-175 (502)
179 KOG0569 Permease of the major 97.4 0.0079 1.7E-07 63.0 17.0 87 33-125 115-203 (485)
180 PRK10077 xylE D-xylose transpo 97.4 0.0038 8.1E-08 65.6 14.8 123 269-414 58-180 (479)
181 TIGR00899 2A0120 sugar efflux 97.3 0.0091 2E-07 60.2 17.0 140 269-459 36-178 (375)
182 PTZ00207 hypothetical protein; 97.3 0.016 3.4E-07 62.5 19.2 119 306-461 90-209 (591)
183 PRK08633 2-acyl-glycerophospho 97.3 0.011 2.4E-07 69.3 18.8 115 269-415 50-164 (1146)
184 PRK06814 acylglycerophosphoeth 97.2 0.011 2.4E-07 69.4 18.2 63 353-415 107-169 (1140)
185 PLN00028 nitrate transmembrane 97.2 0.025 5.3E-07 59.8 18.9 139 272-456 77-218 (476)
186 PRK11902 ampG muropeptide tran 97.2 0.015 3.3E-07 59.8 16.3 84 310-414 71-154 (402)
187 TIGR00806 rfc RFC reduced fola 97.2 0.074 1.6E-06 55.5 20.9 84 32-123 113-199 (511)
188 KOG0255 Synaptic vesicle trans 97.1 0.075 1.6E-06 56.7 21.3 83 31-122 168-250 (521)
189 KOG2816 Predicted transporter 97.1 0.0046 1E-07 64.7 11.4 84 309-417 310-393 (463)
190 TIGR00880 2_A_01_02 Multidrug 97.1 0.00055 1.2E-08 58.0 3.9 86 33-124 50-135 (141)
191 PRK10406 alpha-ketoglutarate t 97.0 0.038 8.1E-07 57.5 17.7 91 308-414 94-184 (432)
192 KOG2532 Permease of the major 97.0 0.014 3E-07 61.4 14.3 116 306-458 102-217 (466)
193 TIGR00792 gph sugar (Glycoside 97.0 0.01 2.2E-07 61.5 12.9 121 269-413 38-159 (437)
194 TIGR00896 CynX cyanate transpo 96.9 0.027 5.9E-07 56.6 15.5 110 268-414 37-146 (355)
195 PRK10642 proline/glycine betai 96.9 0.012 2.5E-07 62.4 13.2 90 308-413 88-177 (490)
196 PF05977 MFS_3: Transmembrane 96.9 0.022 4.8E-07 60.8 15.1 118 268-415 47-164 (524)
197 PRK15462 dipeptide/tripeptide 96.9 0.047 1E-06 57.8 17.1 115 308-461 77-193 (493)
198 KOG0254 Predicted transporter 96.8 0.24 5.2E-06 52.8 22.3 84 33-122 141-225 (513)
199 TIGR00883 2A0106 metabolite-pr 96.8 0.016 3.5E-07 58.4 12.8 91 308-414 66-156 (394)
200 KOG3098 Uncharacterized conser 96.8 0.74 1.6E-05 48.0 24.6 162 269-461 278-439 (461)
201 KOG2325 Predicted transporter/ 96.7 0.04 8.7E-07 57.5 14.5 157 268-459 73-231 (488)
202 PRK15011 sugar efflux transpor 96.6 0.21 4.5E-06 51.1 19.2 89 354-458 105-195 (393)
203 KOG3626 Organic anion transpor 96.6 0.021 4.5E-07 62.3 11.9 172 306-478 161-364 (735)
204 PTZ00207 hypothetical protein; 96.5 1.6 3.4E-05 47.4 25.3 82 32-122 118-200 (591)
205 PRK09952 shikimate transporter 96.4 0.055 1.2E-06 56.4 13.7 111 281-414 75-185 (438)
206 PRK15034 nitrate/nitrite trans 96.4 0.65 1.4E-05 48.7 21.4 84 306-409 99-182 (462)
207 TIGR00902 2A0127 phenyl propri 96.4 0.087 1.9E-06 53.7 14.7 61 353-415 93-153 (382)
208 PF00854 PTR2: POT family; In 96.3 0.03 6.6E-07 57.0 11.2 127 309-466 3-132 (372)
209 PRK15075 citrate-proton sympor 96.3 0.2 4.4E-06 52.1 17.5 90 308-413 87-176 (434)
210 KOG0569 Permease of the major 96.3 0.085 1.8E-06 55.4 14.4 58 353-410 115-172 (485)
211 PF03137 OATP: Organic Anion T 96.2 0.00093 2E-08 71.5 -0.7 182 269-463 41-256 (539)
212 TIGR00889 2A0110 nucleoside tr 96.2 0.0028 6.1E-08 65.7 2.6 86 34-125 308-400 (418)
213 PF03209 PUCC: PUCC protein; 96.2 0.65 1.4E-05 47.3 19.1 58 357-414 92-149 (403)
214 TIGR01272 gluP glucose/galacto 96.1 0.033 7.1E-07 55.3 9.9 62 353-414 9-70 (310)
215 KOG2325 Predicted transporter/ 96.1 0.035 7.7E-07 57.9 10.0 71 346-416 379-450 (488)
216 PRK11128 putative 3-phenylprop 96.0 0.19 4.1E-06 51.2 15.2 61 353-415 93-153 (382)
217 TIGR00882 2A0105 oligosacchari 96.0 0.19 4E-06 51.5 15.1 116 269-414 41-157 (396)
218 PF03137 OATP: Organic Anion T 95.9 0.0017 3.6E-08 69.5 -0.5 92 33-130 140-253 (539)
219 KOG0252 Inorganic phosphate tr 95.9 0.11 2.3E-06 53.6 12.0 96 25-125 135-241 (538)
220 TIGR02718 sider_RhtX_FptX side 95.8 0.42 9.1E-06 48.7 16.8 85 355-455 98-182 (390)
221 KOG2563 Permease of the major 95.8 0.26 5.7E-06 50.6 14.7 61 35-101 141-201 (480)
222 KOG0254 Predicted transporter 95.8 0.19 4.2E-06 53.5 14.5 106 269-409 92-197 (513)
223 PRK09528 lacY galactoside perm 95.6 0.3 6.4E-06 50.5 14.9 29 387-415 138-166 (420)
224 PRK11462 putative transporter; 95.6 0.39 8.4E-06 50.5 15.9 59 354-412 109-168 (460)
225 PF13347 MFS_2: MFS/sugar tran 95.6 0.068 1.5E-06 55.5 9.8 120 279-414 42-164 (428)
226 PF06813 Nodulin-like: Nodulin 95.5 0.23 5E-06 47.6 12.4 122 306-462 65-186 (250)
227 PF06609 TRI12: Fungal trichot 95.5 0.7 1.5E-05 49.9 17.3 137 268-456 80-216 (599)
228 KOG2615 Permease of the major 95.4 0.099 2.2E-06 52.6 9.5 111 269-415 71-181 (451)
229 COG0738 FucP Fucose permease [ 95.3 1.2 2.6E-05 45.4 17.0 91 304-415 75-165 (422)
230 PRK09669 putative symporter Ya 95.0 0.22 4.7E-06 52.0 11.5 60 352-411 107-167 (444)
231 PF00083 Sugar_tr: Sugar (and 94.9 1.9E-05 4.1E-10 82.4 -19.3 83 32-120 100-185 (451)
232 PRK10429 melibiose:sodium symp 94.7 1.3 2.7E-05 46.7 16.3 58 353-410 105-163 (473)
233 COG2223 NarK Nitrate/nitrite t 94.6 0.91 2E-05 46.3 14.0 118 265-414 45-163 (417)
234 COG2807 CynX Cyanate permease 94.5 1.3 2.9E-05 44.4 14.7 138 268-457 49-186 (395)
235 KOG2504 Monocarboxylate transp 94.1 0.84 1.8E-05 48.6 13.5 111 268-414 83-194 (509)
236 PF03092 BT1: BT1 family; Int 94.1 0.83 1.8E-05 47.7 13.2 85 310-415 62-149 (433)
237 PF05978 UNC-93: Ion channel r 93.9 1.9 4.1E-05 38.2 13.1 61 354-414 89-149 (156)
238 KOG0255 Synaptic vesicle trans 93.7 0.59 1.3E-05 49.8 11.5 85 352-455 169-253 (521)
239 KOG1237 H+/oligopeptide sympor 93.5 0.17 3.7E-06 54.5 6.8 214 36-327 61-276 (571)
240 KOG0253 Synaptic vesicle trans 92.8 9 0.00019 38.9 17.0 87 30-124 162-249 (528)
241 COG2211 MelB Na+/melibiose sym 92.8 2.9 6.3E-05 43.8 14.3 104 352-467 110-214 (467)
242 PF11700 ATG22: Vacuole efflux 91.8 0.16 3.4E-06 53.7 3.8 86 33-124 379-465 (477)
243 PF00083 Sugar_tr: Sugar (and 91.4 0.0028 6E-08 66.1 -9.9 61 353-413 101-161 (451)
244 PF01306 LacY_symp: LacY proto 91.1 4 8.6E-05 42.1 13.0 25 268-292 45-69 (412)
245 PRK09848 glucuronide transport 90.5 5.6 0.00012 41.4 14.0 49 353-401 108-157 (448)
246 PF03219 TLC: TLC ATP/ADP tran 90.4 12 0.00026 39.7 16.2 54 362-415 148-205 (491)
247 PF02487 CLN3: CLN3 protein; 89.4 6.1 0.00013 40.6 12.7 81 304-413 86-166 (402)
248 COG3104 PTR2 Dipeptide/tripept 88.0 1.9 4.1E-05 45.1 7.9 120 307-464 92-213 (498)
249 PF03825 Nuc_H_symport: Nucleo 87.6 0.52 1.1E-05 48.6 3.7 86 35-126 302-394 (400)
250 TIGR00769 AAA ADP/ATP carrier 86.7 46 0.00099 35.2 18.3 52 359-410 381-433 (472)
251 KOG2816 Predicted transporter 86.5 23 0.0005 37.2 15.2 49 367-415 125-173 (463)
252 TIGR00939 2a57 Equilibrative N 86.1 18 0.00038 37.8 14.0 85 304-409 72-156 (437)
253 TIGR00788 fbt folate/biopterin 84.5 19 0.00041 37.9 13.6 58 357-415 123-183 (468)
254 TIGR00769 AAA ADP/ATP carrier 83.3 65 0.0014 34.0 22.9 45 371-415 146-190 (472)
255 PF05631 DUF791: Protein of un 80.8 11 0.00024 37.9 9.5 102 26-128 113-217 (354)
256 KOG3574 Acetyl-CoA transporter 80.8 15 0.00032 37.6 10.0 114 273-409 74-188 (510)
257 KOG4686 Predicted sugar transp 80.0 2.6 5.6E-05 41.1 4.4 61 38-104 356-416 (459)
258 KOG4255 Uncharacterized conser 77.4 81 0.0018 31.5 17.1 99 352-460 111-214 (439)
259 PF01770 Folate_carrier: Reduc 76.3 1E+02 0.0022 32.0 19.2 60 354-414 94-153 (412)
260 PF01891 CbiM: Cobalt uptake s 72.6 53 0.0011 30.3 11.1 99 273-385 106-204 (205)
261 PF13000 Acatn: Acetyl-coenzym 72.0 46 0.00099 35.3 11.3 123 278-414 51-178 (544)
262 KOG0252 Inorganic phosphate tr 70.5 12 0.00027 39.0 6.7 119 266-413 81-203 (538)
263 KOG4332 Predicted sugar transp 70.2 1E+02 0.0022 30.2 12.2 40 359-398 349-388 (454)
264 KOG2563 Permease of the major 69.0 1E+02 0.0022 32.3 12.8 54 361-414 147-200 (480)
265 KOG0637 Sucrose transporter an 66.3 30 0.00064 36.1 8.4 167 222-411 32-200 (498)
266 COG0477 ProP Permeases of the 66.3 80 0.0017 29.2 11.4 62 353-414 93-156 (338)
267 PF06963 FPN1: Ferroportin1 (F 65.2 1.8E+02 0.0039 30.3 17.9 62 352-413 354-415 (432)
268 PF07857 DUF1632: CEO family ( 64.5 45 0.00098 32.0 8.9 68 383-460 72-139 (254)
269 KOG1479 Nucleoside transporter 62.3 1.9E+02 0.0042 29.8 13.4 47 358-409 121-167 (406)
270 COG3202 ATP/ADP translocase [E 62.1 2.2E+02 0.0047 30.2 18.1 54 362-415 152-209 (509)
271 PRK07331 cobalt transport prot 55.6 1.7E+02 0.0038 29.1 11.6 34 354-387 186-220 (322)
272 COG2270 Permeases of the major 54.2 12 0.00026 38.6 3.2 82 36-123 343-425 (438)
273 KOG3574 Acetyl-CoA transporter 47.0 1E+02 0.0022 31.8 8.3 58 357-414 372-429 (510)
274 PRK11909 cobalt transport prot 46.7 2.6E+02 0.0056 26.4 11.6 37 353-389 182-219 (230)
275 COG0477 ProP Permeases of the 46.5 16 0.00035 34.1 2.7 80 32-116 92-174 (338)
276 PF13000 Acatn: Acetyl-coenzym 45.4 64 0.0014 34.2 6.9 54 357-410 408-461 (544)
277 PF02487 CLN3: CLN3 protein; 45.1 3.7E+02 0.008 27.8 20.2 61 353-413 334-394 (402)
278 KOG3098 Uncharacterized conser 43.9 2.5E+02 0.0054 29.6 11.1 62 354-415 102-163 (461)
279 PF06645 SPC12: Microsomal sig 43.3 15 0.00033 28.1 1.6 53 76-131 8-60 (76)
280 PF01102 Glycophorin_A: Glycop 43.2 25 0.00053 29.7 2.9 25 438-462 70-94 (122)
281 PF07172 GRP: Glycine rich pro 42.2 43 0.00092 26.9 4.0 41 439-479 6-47 (95)
282 PRK11715 inner membrane protei 40.5 4.5E+02 0.0098 27.5 12.8 19 312-330 306-324 (436)
283 PF06963 FPN1: Ferroportin1 (F 40.0 4.6E+02 0.0099 27.4 14.4 26 266-291 38-63 (432)
284 PF06123 CreD: Inner membrane 39.7 4.6E+02 0.01 27.3 13.1 19 312-330 300-318 (430)
285 PF12270 Cyt_c_ox_IV: Cytochro 39.6 45 0.00097 28.7 4.0 39 438-476 40-78 (137)
286 PF03219 TLC: TLC ATP/ADP tran 38.0 5.2E+02 0.011 27.5 18.6 40 56-101 166-205 (491)
287 COG3202 ATP/ADP translocase [E 36.6 5.5E+02 0.012 27.3 18.5 28 74-101 182-209 (509)
288 PHA02902 putative IMV membrane 36.2 90 0.002 22.9 4.4 27 438-464 5-31 (70)
289 PF11368 DUF3169: Protein of u 35.4 60 0.0013 31.0 4.7 14 453-466 68-81 (248)
290 TIGR00123 cbiM cobalamin biosy 35.2 3.8E+02 0.0081 25.0 10.5 32 356-387 181-212 (214)
291 PF09064 Tme5_EGF_like: Thromb 33.9 29 0.00063 22.0 1.4 17 15-31 9-25 (34)
292 PF12606 RELT: Tumour necrosis 33.7 67 0.0014 22.5 3.4 27 452-478 19-45 (50)
293 PF12273 RCR: Chitin synthesis 29.5 25 0.00055 29.9 0.9 14 450-463 16-29 (130)
294 PF07672 MFS_Mycoplasma: Mycop 28.9 43 0.00094 32.2 2.4 76 386-473 2-78 (267)
295 KOG3810 Micronutrient transpor 27.9 5.1E+02 0.011 26.5 9.7 94 353-456 325-420 (433)
296 KOG4332 Predicted sugar transp 27.3 80 0.0017 30.8 3.9 86 28-122 338-426 (454)
297 KOG3762 Predicted transporter 26.6 2.9E+02 0.0062 29.9 8.1 70 377-463 486-556 (618)
298 PF06027 DUF914: Eukaryotic pr 26.0 6.1E+02 0.013 25.4 10.1 38 84-122 14-57 (334)
299 PF01733 Nucleoside_tran: Nucl 25.3 24 0.00051 34.9 0.0 42 362-408 5-46 (309)
300 PF06679 DUF1180: Protein of u 24.9 1E+02 0.0022 27.4 3.9 27 436-462 95-121 (163)
301 KOG2927 Membrane component of 23.8 1.5E+02 0.0033 29.7 5.1 34 377-413 204-237 (372)
302 KOG3880 Predicted small molecu 23.6 42 0.0009 33.4 1.3 81 304-413 89-169 (409)
303 PRK06265 cobalt transport prot 20.7 6.5E+02 0.014 23.0 10.6 30 359-388 169-198 (199)
No 1
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-68 Score=558.67 Aligned_cols=449 Identities=43% Similarity=0.751 Sum_probs=401.2
Q ss_pred eeeehhhhcccCCCCCCCCCC-CCCCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHH
Q 011513 2 LVLSLTAAISKLHPPDCGNQD-SGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW 80 (484)
Q Consensus 2 ~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~ 80 (484)
.+||+++++|.|+|+.|.... ...|+.|+..+...+|.++.++++|+|+.|||+.++++|||++.+++++..+.++|+|
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW 198 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNW 198 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhH
Confidence 568999999999999981111 3489999999999999999999999999999999999999998777777778899999
Q ss_pred HHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCC
Q 011513 81 YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPE 160 (484)
Q Consensus 81 ~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~ 160 (484)
+|+.+|.|.+++.++..|+|++.||.++|.++++.|+++.++|+.+.+.|++++|.++|++.+.+|++++.+|++.+.+.
T Consensus 199 ~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~gsp~t~i~~Vlvaa~~k~~~~~~~ 278 (571)
T KOG1237|consen 199 FYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRGSPKTRIGQVLVAAAFKRKAVVSL 278 (571)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCCCchhHHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876665
Q ss_pred CCccccccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHH
Q 011513 161 EPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVA 240 (484)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~ 240 (484)
+.+.. +.. .......++++..+++|+|++..+... +.+...++|++|++++|||.|.+++++|+|...++||++
T Consensus 279 ~~~~~--~~~--~~~~~~~~~t~~f~~l~kaa~~~~~~~--~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~~~~ 352 (571)
T KOG1237|consen 279 DPEEL--YYD--CTDSVAIEGTKPFRFLDKAALKTSDDL--KDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIYSTV 352 (571)
T ss_pred cchhc--ccc--ccccccccCCcccchhhHhhccCCccc--ccccccCCccCCCceehhhhhhhhhhhHHHHHHHHHHHH
Confidence 42221 000 011123455777899999988754332 334456789999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHhcCCCCCCcc-ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHH
Q 011513 241 LVQQQTYVVFQALQSDRRVGNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIF 319 (484)
Q Consensus 241 ~~q~~t~~~~q~~~~~~~~g~~g-~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i 319 (484)
+.|+.|.++.|+.+||++++ + +++|+++++.+..+.++++.|+++++++|+.+|+++++.+.++++|+++|++++.+
T Consensus 353 ~aq~~t~~v~Q~~~mdr~~~--~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si~ 430 (571)
T KOG1237|consen 353 YAQMVTFFVLQATTMDRHLG--SNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSIL 430 (571)
T ss_pred HHhhhhheehhhhhcCCCCC--CCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHHH
Confidence 99999999999999999997 5 99999999999999999999999999999999999876678999999999999999
Q ss_pred HHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHH
Q 011513 320 TMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF 399 (484)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~ 399 (484)
+|..++.+|.+|++.+.++ ....+++|++|++|||+++|+||+|.+++++||.|+|+|++||+..+++|+++.
T Consensus 431 sm~~aa~vE~krl~~~~~~-------~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~ 503 (571)
T KOG1237|consen 431 SMAVAGIVEAKRLKTAVSL-------LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTV 503 (571)
T ss_pred HHHHHHHHHHHHhhhhhhc-------cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHH
Confidence 9999999999999877541 123478999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhcccccCCCCCCCCC-cCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513 400 AISNYLNGFLISMVHRFTKGASTGDWLP-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 467 (484)
Q Consensus 400 ~iG~~lg~~l~~~~~~~~~~~~~~~w~~-~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~ 467 (484)
++|++++.+++.++...|+. ..+|++ +++|++|+++|||+++.+..++...|..++++|++++.++
T Consensus 504 a~G~~lss~Lv~~v~~~t~~--~~~w~~~~~ln~~~ld~Fy~lla~~~~~n~~~~~~~~~~y~~~~~~~ 570 (571)
T KOG1237|consen 504 AVGNYLSSVLVSLVQFSTGK--AAEWLGFANLNKGRLDYFYWLLAVYSAVNFLYFLICAKRYDYKDDKD 570 (571)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CcccCChhHhhhhHHHHHHHHHHHHHhhhhhheEEEEEeeeeccccC
Confidence 99999999999999887743 457999 9999999999999999999999999999999999987654
No 2
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-48 Score=390.00 Aligned_cols=368 Identities=18% Similarity=0.258 Sum_probs=283.1
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.....+++++++|++|+|++|||++++++|||+++|+| ||.+|++||+++|+|++++|++++++++++||+.+|.+
T Consensus 115 ~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr----rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~ 190 (498)
T COG3104 115 SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR----RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGL 190 (498)
T ss_pred ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc----cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHH
Confidence 45778999999999999999999999999999999876 47899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccceeeecC--CCCCchhh---------H-HHHHHHHHHhccccCCCCCccccccCCCccccCCCC
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVK--PEGSPLAS---------T-VQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKL 179 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~--p~~~pl~~---------~-~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (484)
++++|.+++++|++++|++.... |+.+|.+. + .+++....-.. +. .
T Consensus 191 aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~---------~------------ 248 (498)
T COG3104 191 AAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLL-LN---------Q------------ 248 (498)
T ss_pred HHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHH-HH---------H------------
Confidence 99999999999999999886542 33333321 0 11111100000 00 0
Q ss_pred CCCCcccc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCC
Q 011513 180 PHTGQFRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDR 257 (484)
Q Consensus 180 ~~~~~~~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~ 257 (484)
+..++ +....+........ ....+ .+.+ +||||+++++++++..++||+.|+|++|++.+|+ ++.|+
T Consensus 249 ---~~~~~~~~~~~i~~~~~~~~----~~~~~---~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~ 317 (498)
T COG3104 249 ---NTFSGVLLVISILIAIIYFA----EAFRS---PKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317 (498)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH----HHhcc---CccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 00000 00000000000000 00111 2233 8899999999999999999999999999888887 66677
Q ss_pred CCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011513 258 RVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALS 337 (484)
Q Consensus 258 ~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~ 337 (484)
+.. |+++|++|+|++||+++++++|+++++++|+.++ +++|+++.|+++|+++++++++++.......
T Consensus 318 ~~~--g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~----~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~------ 385 (498)
T COG3104 318 QIF--GFEVPPAWFQSLNPFFIILFSPILAALWTKLGRG----NKQPSTPIKFALGLILAGLGFLILLLAGIWF------ 385 (498)
T ss_pred ccc--ceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcC----CCCCCcchHHHHHHHHHHHHHHHHHHHHHhh------
Confidence 744 7999999999999999999999999998876655 2479999999999999999999998875421
Q ss_pred CCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513 338 RPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417 (484)
Q Consensus 338 ~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~ 417 (484)
+ ++.+.+|+||++++|+++++||++++|+++|++++++|++++|++||.|+++.+.|+.+++.+.+.... +
T Consensus 386 -~-------~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~-~ 456 (498)
T COG3104 386 -G-------GPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAV-T 456 (498)
T ss_pred -c-------CCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccc-c
Confidence 1 113469999999999999999999999999999999999999999999999999999999888774221 1
Q ss_pred cCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCC
Q 011513 418 KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSG 466 (484)
Q Consensus 418 ~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~ 466 (484)
. +..+......+|+.++...++..++....+++.+|...+
T Consensus 457 ~---------~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~~~~r~~~~ 496 (498)
T COG3104 457 D---------PAYTAFIEGRVFGTIGVVAIVIGILLLLLSPKLNRMMKG 496 (498)
T ss_pred c---------hhhhhhhhhhhHHHHHHHHHHHHHHHHHhhHHHHHhhcC
Confidence 0 001111234689999999999999999999988776443
No 3
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=100.00 E-value=9.5e-41 Score=358.21 Aligned_cols=364 Identities=27% Similarity=0.493 Sum_probs=296.5
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-------cc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-------SW 105 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-------g~ 105 (484)
+...++++++++++|+|++|||++++++|||++++ +++++++|+|||+++|+|+++++++++++++++ ||
T Consensus 84 ~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~---~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~ 160 (654)
T TIGR00926 84 HDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQ---LSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCY 160 (654)
T ss_pred HHHHHHHHHHHHHhhccccccCchhhhHhhcCccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcch
Confidence 45668899999999999999999999999998643 234789999999999999999999999998543 69
Q ss_pred cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513 106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 185 (484)
Q Consensus 106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (484)
+++|++++++|++++++++.++|+|++.+|.++++.+..+++..+++++...... ....
T Consensus 161 ~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~~~~~~~---------------------~~~~ 219 (654)
T TIGR00926 161 PLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKRFSTRSE---------------------HWPL 219 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHhhccCCc---------------------ccch
Confidence 9999999999999999999999999887888888888888888777654321110 0013
Q ss_pred cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc
Q 011513 186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 265 (484)
Q Consensus 186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~ 265 (484)
+|+|++... ..+++++|+|++++++++++..++||..|+|+.+.+..|+.+||++++ ++.
T Consensus 220 ~~ld~a~~~------------------~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~--g~~ 279 (654)
T TIGR00926 220 HWLDYAKDK------------------HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVG--GFE 279 (654)
T ss_pred hHHHHhccc------------------cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccC--CEe
Confidence 566665321 124568999999999999999999999999999999999999998887 889
Q ss_pred ccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---------
Q 011513 266 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLAL--------- 336 (484)
Q Consensus 266 i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~--------- 336 (484)
+|+++++++|++.++++.|+++..++|.++|.+ ..+++++|+++|++++++++++++++|.++++..+
T Consensus 280 ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~---~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~~~~~~~~~~~~ 356 (654)
T TIGR00926 280 IQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCG---TRFTSLRKMAVGGLLAALSFFVAALVQLKVNPTLPEEPSANEIF 356 (654)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcceE
Confidence 999999999999999999999998888887643 34889999999999999999999999987631100
Q ss_pred -------------------------------c-------------C---------------------------------C
Q 011513 337 -------------------------------S-------------R---------------------------------P 339 (484)
Q Consensus 337 -------------------------------~-------------~---------------------------------g 339 (484)
. . +
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (654)
T TIGR00926 357 LQVLNTDCTICDFSVLSKRVLPHDVYLHLDKKNTSGDQGLFTTKSSAKGWTLTYDLSYDGACGLTGNCPKTTDAHELEPK 436 (654)
T ss_pred EEEecCCCCcceEEEEecCCcccccccccCccccccccccccccccccccceEEEEeccccccccCCCCccccceeecCC
Confidence 0 0 0
Q ss_pred C---------cc-----------------------------c--------------------------------------
Q 011513 340 V---------GL-----------------------------E-------------------------------------- 343 (484)
Q Consensus 340 ~---------~~-----------------------------~-------------------------------------- 343 (484)
. .. .
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (654)
T TIGR00926 437 ISYVLLLSQGGYQLTANTDKPTDAKTEKGMGSVRLVNTLNGEFGMISLCTSDSDSVTPCNPRDPYDFYFRGTKYPANTCD 516 (654)
T ss_pred ceEEEEEecCCcceeeeeecCccCCCCCCCceEEEEecCCCcceeeEEecccCcccccCCcccccccccccceeeeeecc
Confidence 0 00 0
Q ss_pred --------------------------ccC------------CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 344 --------------------------QRR------------GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 344 --------------------------~~~------------~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
++. .+++++|++|++|||++.++||++.+.+++|+.++++|+
T Consensus 517 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wq~pq~~~~~~~e~~~~~~~~e~~~~~~p~ 596 (654)
T TIGR00926 517 RIDNAKSSTFLSNQLDMGIYYLIVITENSKIDELQAQIVELVSVNTVSILWQIPQYVILTAGEVLFSVTGLEFSYSQAPP 596 (654)
T ss_pred cccccccccccccccccceEEEEEEcCCCCCCcceeEEEEecCCCceeHHHHHHHHHHHHHHHHHHHHHHHHhhHHhCcH
Confidence 000 024468999999999999999999999999999999999
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 460 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~ 460 (484)
+||+..+++|.++.++|+.+...+...-... +....|.+++.++++..++|..+++.|
T Consensus 597 ~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~f~~~a~~Y 654 (654)
T TIGR00926 597 NMKSVLQALWLLTVAIGNLIVVVIAEFENFS-----------------VQAAEFFLFASLMLVVMAIFSILAYFY 654 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCh-----------------HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999987776542211 123467788899999999999988765
No 4
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=100.00 E-value=6e-40 Score=341.26 Aligned_cols=370 Identities=15% Similarity=0.177 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhH
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 114 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~ 114 (484)
..+++++.++++|.|+++||.+++++|+|+++|++ |+++|+++|+++|+|++++|.+++++++++||+++|.++++
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai 176 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV 176 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 34677888899999999999999999999976543 47899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccceeeecCC-CCCchhh--HHHHH-----HH-----HHHhccccCCCCCccccccCCCccccCCCCCC
Q 011513 115 MMFLSCAMFFLGSRLYAKVKP-EGSPLAS--TVQVF-----VA-----AIKKRHLKLPEEPWLTLHNHIPKNCINSKLPH 181 (484)
Q Consensus 115 ~~~l~~i~~l~~~~~~~~~~p-~~~pl~~--~~~vl-----~~-----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (484)
+|++++++++.++|++.+... +.+|.+. ....+ .. ....... .+.
T Consensus 177 gm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~------------ 234 (493)
T PRK15462 177 GMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLF----------WKE------------ 234 (493)
T ss_pred HHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHH------------
Confidence 999999999888877654211 1122211 00000 00 0000000 000
Q ss_pred CCccccccc-ccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCC
Q 011513 182 TGQFRCLDK-AAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRV 259 (484)
Q Consensus 182 ~~~~~~l~~-a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~ 259 (484)
....+-. ..+... .. ..+...+..+.+||||+..++++++..++||+.|+|.++++...+ +++|+++
T Consensus 235 --~~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~ 303 (493)
T PRK15462 235 --WSVYALIVATIIGL-GV--------LAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM 303 (493)
T ss_pred --HHHHHHHHHHHHHH-HH--------HHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence 0000000 000000 00 000000112347899999999999999999999999999775555 8899998
Q ss_pred CCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513 260 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP 339 (484)
Q Consensus 260 g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g 339 (484)
+ |+++|++|+|++||++|+++.|++.++ |+|+.+++++|+.++|+++|+++.++||+++.+.... ...+
T Consensus 304 ~--g~~ip~~~~qslNp~~ii~l~P~~a~l----w~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~----~~~~- 372 (493)
T PRK15462 304 F--GYTVPTAMFQSINAFAVMLCGVFLAWV----VKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARW----SAMY- 372 (493)
T ss_pred c--ceeeCHHHHHhHhHHHHHHHHHHHHHH----HHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCC-
Confidence 7 999999999999999999999999996 5555444557999999999999999999999876542 1111
Q ss_pred CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHH-HHHHHHHHHHhHhhccccc
Q 011513 340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGF-AISNYLNGFLISMVHRFTK 418 (484)
Q Consensus 340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~-~iG~~lg~~l~~~~~~~~~ 418 (484)
..+|++|++..|+++|+||++.+|.+++++++++|++++|++||+|++.. ++|+.+++.+.+.....+.
T Consensus 373 ----------~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~ 442 (493)
T PRK15462 373 ----------GHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASF 442 (493)
T ss_pred ----------CCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 24899999999999999999999999999999999999999999999955 8999999999887743210
Q ss_pred CCCCCCCCCcCccCchhHHHHHHHHHHHHHH--HHHHHHhhhcccccCCC
Q 011513 419 GASTGDWLPEDLNKGRLDYFYYLVAALGLLN--FGFFLLCAKWYKYKGSG 466 (484)
Q Consensus 419 ~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~--~i~~~~~~~~~~~~~~~ 466 (484)
.. ... ..+ +..++..+|..++.++++. .+.+....+..|.|+|.
T Consensus 443 ~~-~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (493)
T PRK15462 443 DA-SGA-INY--SINAYIEVFDQITWGALACVGVVLMIWLYQALKFRNRA 488 (493)
T ss_pred Cc-ccc-ccc--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 00 000 000 1113566788878766655 34445555555666554
No 5
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=100.00 E-value=1.1e-42 Score=354.69 Aligned_cols=352 Identities=33% Similarity=0.553 Sum_probs=241.7
Q ss_pred eeeehhhhcccCCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHH
Q 011513 2 LVLSLTAAISKLHPPDCGNQDSGACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWY 81 (484)
Q Consensus 2 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~ 81 (484)
++|+++++.+.+ +++.+.+++++||+++++|+|++|||++++++|||+++++ ++++++|+||
T Consensus 16 ~ll~l~~~~~~~---------------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~---~~~~~~F~~f 77 (372)
T PF00854_consen 16 VLLTLSAIPPSL---------------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD---SRRDSFFNWF 77 (372)
T ss_dssp HH--HHHTSSSC---------------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT---THHHHHHHHH
T ss_pred HHhHHHHhcchh---------------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch---hhhhhhHHHH
Confidence 346666666655 3445678999999999999999999999999999998642 3478999999
Q ss_pred HHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHHhccceeeec-CCCCCchhh-HHHHHHHHHHhccccCC
Q 011513 82 YFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYAKV-KPEGSPLAS-TVQVFVAAIKKRHLKLP 159 (484)
Q Consensus 82 Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~-~p~~~pl~~-~~~vl~~a~~~~~~~~~ 159 (484)
||++|+|+++++.+++++++++||+++|++++++|++++++|+.++++|++. +|.++++.. ...++..+.+++....+
T Consensus 78 Y~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (372)
T PF00854_consen 78 YWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGGSPLTNFIKLVLVAAFKKRKLAVP 157 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-----S--S--SHHHHHHHHHHHCCCH-
T ss_pred HHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCCcccchhHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999999999999887 677888877 44555555555544332
Q ss_pred CCCccccccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcc-cCcchhHHHHHHhHhhHHHHHHHHHHH
Q 011513 160 EEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWR-LSSMQKVEEVKVLIRVIPIWASAIVYY 238 (484)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~-~~~~~~v~~~k~~~~~l~l~~~~~~~~ 238 (484)
.... ..+....... ..... ... ...++....... ...|. .++++++++.|.+.+.++.+...++|+
T Consensus 158 ~~~~-~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i~~~ 224 (372)
T PF00854_consen 158 KGSS-WLDWALFQYS-ERSIF--GII-VFIRAAVIFFPE--------IFFWALFCQVQRVEELKALIRFLPIFLFWIFYW 224 (372)
T ss_dssp HHHH-HHHHHHHHHC-CCCCC--CCC-CHHHHHHHHCCC--------HHHHTTTSSTTTHHHCCHHHCHHHCCCHHHHHH
T ss_pred cchH-HHHHhhhhhh-hhhhh--hhh-hhccchhhhhhh--------hhhcccCCccceeeeeeeeeeccccCeEEEEee
Confidence 1110 0000000000 00000 000 000111000000 00111 145678899999999999999999999
Q ss_pred HHHhchhhHHHHHHHhcCCCCCCcc-ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHH
Q 011513 239 VALVQQQTYVVFQALQSDRRVGNTH-FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILA 317 (484)
Q Consensus 239 ~~~~q~~t~~~~q~~~~~~~~g~~g-~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~ 317 (484)
.++.|..+....|..++|+.++ + +++|+++++++|+++++++.|+++++++|+.++ ++++++++|+++|++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~--~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~~----~~~~~~~~k~~~G~~~~ 298 (372)
T PF00854_consen 225 QMYSQLNTFFLLQVPQMDRGIG--GLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLRR----GIQPSPPQKFGIGMVFA 298 (372)
T ss_dssp HHCTCCHHHHHHCGGGTTT-SS--------SGGGTTHHHHHCHHHHHHHHHHCCCTTTT----------HHHHHHH-HHH
T ss_pred ehhhhhhhHHHHhccccccccc--cccccccchhhhHHHHHHHHHHHHHHHHHhHHhhh----cccchhhhhhhHHHHHH
Confidence 9999998888888888988887 7 899999999999999999999999999999882 33689999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHH
Q 011513 318 IFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV 397 (484)
Q Consensus 318 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l 397 (484)
++++++.+.++.+|......+| ..+.+|+++.|++++++|.+.++++.+..++.+|+++++.++|+|+.
T Consensus 299 ~~~~~~~~~v~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~ 367 (372)
T PF00854_consen 299 ILAMFVAAIVEIRRLCYAQPCG-----------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFA 367 (372)
T ss_dssp HHHHHTTTHHHH---HH----T-----------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHH
T ss_pred HHHHHHHHHHHhhhhhcccccC-----------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHH
Confidence 9999999999987765554443 45669999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 011513 398 GFAI 401 (484)
Q Consensus 398 ~~~i 401 (484)
....
T Consensus 368 ~~~~ 371 (372)
T PF00854_consen 368 LSAF 371 (372)
T ss_dssp HH--
T ss_pred Hhcc
Confidence 6653
No 6
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=100.00 E-value=5.3e-37 Score=322.88 Aligned_cols=370 Identities=14% Similarity=0.197 Sum_probs=273.1
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 115 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~ 115 (484)
.+++++.++++|+|+++||..++++|+||++++| ++++|+++|+++|+|+++||.+++++.+++||+++|++++++
T Consensus 107 ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~ 182 (489)
T PRK10207 107 LIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG 182 (489)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 4778999999999999999999999999876422 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccceeeec--CCCCCchh--hHHHH------HHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513 116 MFLSCAMFFLGSRLYAKV--KPEGSPLA--STVQV------FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 185 (484)
Q Consensus 116 ~~l~~i~~l~~~~~~~~~--~p~~~pl~--~~~~v------l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (484)
++++++.++..++++++. +|++++.. ..... +........ +.. .. .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~-~~~-~~----------------------~ 238 (489)
T PRK10207 183 LIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLM-HNV-EV----------------------A 238 (489)
T ss_pred HHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH-hhh-hH----------------------H
Confidence 999888888887776543 23333321 11000 000100000 000 00 0
Q ss_pred cc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-hcCCCCCCcc
Q 011513 186 RC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTH 263 (484)
Q Consensus 186 ~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~g~~g 263 (484)
.+ +....+.... ...++..+ .+..++++.+..+++++..++||+.|+|..+.+.++.. ++|++.. |
T Consensus 239 ~~~~~~~~~i~~~---------~f~~~~~~-~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~--G 306 (489)
T PRK10207 239 NLVLIVLSIVVTI---------IFFREAFK-LDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEIL--G 306 (489)
T ss_pred HHHHHHHHHHHHH---------HHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhcccccc--c
Confidence 00 0000000000 00000001 12345677777788888899999999999887777664 6777765 8
Q ss_pred ccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccc
Q 011513 264 FKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE 343 (484)
Q Consensus 264 ~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~ 343 (484)
+.+|+++++++|++.++++.|+.+++ ++|+++|+.++++++|+++|+++.+++++++++.+... ...+
T Consensus 307 ~~i~~~~~~~~n~~~iii~~pl~~~l----~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~---~~~~----- 374 (489)
T PRK10207 307 FSINPVSFQALNPFWVVVASPILAGI----YTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWF---ADAQ----- 374 (489)
T ss_pred eEECHHHHHhHhHHHHHHHHHHHHHH----HHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhh---cCCC-----
Confidence 99999999999999999999998874 56666666679999999999999999998876544311 0011
Q ss_pred ccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCC
Q 011513 344 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTG 423 (484)
Q Consensus 344 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~ 423 (484)
..+|+||+++.|++.|+||++.+|++++++++.+|++++|.+||+|+++.++|+.+|+.+++.+.....
T Consensus 375 ------~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~----- 443 (489)
T PRK10207 375 ------GLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN----- 443 (489)
T ss_pred ------CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----
Confidence 247899999999999999999999999999999999999999999999999999999999887642111
Q ss_pred CCCCcCc-cCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 011513 424 DWLPEDL-NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 470 (484)
Q Consensus 424 ~w~~~~l-n~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~ 470 (484)
.. |.. .+.++..+|..+++.+++..++++++.|+++|..++||+|
T Consensus 444 ~~--~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 489 (489)
T PRK10207 444 IT--DPLETLPVYTNVFGKIGLVTLGVAVVMALMVPWLNRMINTPESH 489 (489)
T ss_pred cc--cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence 00 110 0123577999999999999999999999999998888875
No 7
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=100.00 E-value=4.3e-36 Score=315.52 Aligned_cols=361 Identities=14% Similarity=0.190 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 113 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~ 113 (484)
...+++++.++++|.|+++|+..++++|+++++++++ ++++|+++|++.|+|+++||.+++++++++||+++|.+++
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~---r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~ 178 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPR---RDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAA 178 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCccc---ccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 4567889999999999999999999999998764222 4679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccceeeecCCCCCchhhH-----HH--H----HHHHHHhccccCCCCCccccccCCCccccCCCCCCC
Q 011513 114 FMMFLSCAMFFLGSRLYAKVKPEGSPLAST-----VQ--V----FVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 182 (484)
Q Consensus 114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~-----~~--v----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (484)
+.++++.+++++.++.+++.++++++.... .+ . +....+.... ...... .+
T Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~------------- 240 (475)
T TIGR00924 179 VGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWL-MHHVVI----AN------------- 240 (475)
T ss_pred HHHHHHHHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHH-HhccHH----HH-------------
Confidence 999998888888877776544333322110 00 0 0000000000 000000 00
Q ss_pred CcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHH-HHHHhcCCCCCC
Q 011513 183 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV-FQALQSDRRVGN 261 (484)
Q Consensus 183 ~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~-~q~~~~~~~~g~ 261 (484)
........+......... . ++ +.+ .+++++..+++++++..++||++|+|+.+++. ++.+++|++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~-~-----~~----~~~-~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~- 308 (475)
T TIGR00924 241 ILLMTVTLAVIIFFFRLA-F-----KP----RLD-AVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEML- 308 (475)
T ss_pred HHHHHHHHHHHHHHHHHH-H-----hc----cCC-HHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-
Confidence 000000000000000000 0 00 112 23455556789999999999999999999664 55677898877
Q ss_pred ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Q 011513 262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 341 (484)
Q Consensus 262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~ 341 (484)
++++|+++++++|++.+++++|+++++ ++++.+|+.+++...|+++|+++++++++.+++.... ...
T Consensus 309 -~~~ip~~~~~~~n~~~iil~~p~~~~~----~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~----~~~---- 375 (475)
T TIGR00924 309 -GMSVPVIWFQSLNPFWVVVGSPVLAMI----WTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWF----ADA---- 375 (475)
T ss_pred -ceEECHHHHHhhhHHHHHHHHHHHHHH----HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCC----
Confidence 889999999999999999999998875 4444444456889999999999999999998876321 111
Q ss_pred ccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCC
Q 011513 342 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAS 421 (484)
Q Consensus 342 ~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~ 421 (484)
..++|+||++++|+++|+||++.+|++++++++++|+++||+++|++.+..++|+.+++.++.......
T Consensus 376 -------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~---- 444 (475)
T TIGR00924 376 -------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQ---- 444 (475)
T ss_pred -------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----
Confidence 135899999999999999999999999999999999999999999999999999999999987754321
Q ss_pred CCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011513 422 TGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463 (484)
Q Consensus 422 ~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~ 463 (484)
+ ...+|..+++++++..++++++.|+++|.
T Consensus 445 --~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 474 (475)
T TIGR00924 445 --G----------VTGVFGKIGLVTLLVGVVMALMVPWLNRM 474 (475)
T ss_pred --c----------hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 24578888888888888898888887763
No 8
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=100.00 E-value=3.2e-35 Score=310.66 Aligned_cols=369 Identities=15% Similarity=0.220 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 113 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~ 113 (484)
...+++++.++++|.|+++|+..++++|+|++++++ ++++++++|+++|+|+++||.+++++.+++||+++|++++
T Consensus 112 ~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~ 187 (500)
T PRK09584 112 AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSV 187 (500)
T ss_pred HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 456788999999999999999999999999865422 3568999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccceeeec--CCCCCchhh--H----HHHHHHHHHhcc-ccCCCCCccccccCCCccccCCCCCCCCc
Q 011513 114 FMMFLSCAMFFLGSRLYAKV--KPEGSPLAS--T----VQVFVAAIKKRH-LKLPEEPWLTLHNHIPKNCINSKLPHTGQ 184 (484)
Q Consensus 114 ~~~~l~~i~~l~~~~~~~~~--~p~~~pl~~--~----~~vl~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (484)
+.++++++.+++.++.+++. +|+++|... . ..+......... .+.+. .
T Consensus 188 i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~ 244 (500)
T PRK09584 188 VGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQE-----------------------I 244 (500)
T ss_pred HHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcch-----------------------H
Confidence 99999988877776666543 233233211 1 011111100000 00000 0
Q ss_pred ccc-cccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCc
Q 011513 185 FRC-LDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNT 262 (484)
Q Consensus 185 ~~~-l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~ 262 (484)
.+. +-...+.... ..++...+.+.+|+++.+..+++++..++||++|.|+++.+..|+ +++|++..
T Consensus 245 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~-- 312 (500)
T PRK09584 245 ARMALGVVALGIVV----------IFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSIL-- 312 (500)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcccccc--
Confidence 000 0000000000 000000011235677777778888999999999999999887776 45777766
Q ss_pred cccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513 263 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 342 (484)
Q Consensus 263 g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 342 (484)
|+.+|+++++++|++.+++++|+++++ ++|+.+| +++.+|+++|+++.+++++++++.... ..+
T Consensus 313 g~~i~~~~~~s~n~i~iil~~p~~~~~----~~~l~~r---~~~~~~~~~G~~l~~l~f~~l~~~~~~----~~~----- 376 (500)
T PRK09584 313 GIAVEPEQYQALNPFWIMIGSPILAAI----YNKMGDR---LPMPHKFAIGMVLCSGAFLVLPLGAKF----AND----- 376 (500)
T ss_pred ceEECHHHHHHHhHHHHHHHHHHHHHH----HHHhCcC---CCcHHHHHHHHHHHHHHHHHHHHHHHh----cCC-----
Confidence 889999999999999999999999885 5665443 678999999999999999998876542 111
Q ss_pred cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCC
Q 011513 343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGAST 422 (484)
Q Consensus 343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~ 422 (484)
...+|.+|++++|+++|+||++++|.+++++++++|+++||++||+|+++.++|+.+++.+.+.+.....
T Consensus 377 ------~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~---- 446 (500)
T PRK09584 377 ------AGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDN---- 446 (500)
T ss_pred ------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc----
Confidence 2358999999999999999999999999999999999999999999999999999999999876542110
Q ss_pred CCCCCcCcc-CchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCc
Q 011513 423 GDWLPEDLN-KGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAP 470 (484)
Q Consensus 423 ~~w~~~~ln-~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~ 470 (484)
..+... .+.+..+|..+++++++..++++++.|+.+|..++|+++
T Consensus 447 ---~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k~~~~~~~~ 492 (500)
T PRK09584 447 ---VTDPLMSLEVYGRVFLQIGIATAVIAVLMLLTAPKLNRMTQDDSAD 492 (500)
T ss_pred ---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 001111 112567888899998888889999999999987777643
No 9
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.54 E-value=1e-12 Score=136.08 Aligned_cols=308 Identities=12% Similarity=-0.010 Sum_probs=177.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++.+++.+++.|...|...+.+.|.+++++ +.++.++.+++.++|..+|+.+++++.+..+|++.|.+.
T Consensus 109 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 109 SLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 45667788888899988888988999999887532 356788888999999999999999998888999999988
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..+++.+..+.. +. .+|+..+ +. +.. .+..+
T Consensus 183 ~~~~~~~~~~~~~l-~~---~~~~~~~--------------~~-----~~~---------------------~~~~~--- 215 (417)
T PRK10489 183 AAGTFITLLPLLRL-PA---LPPPPQP--------------RE-----HPL---------------------RSLLA--- 215 (417)
T ss_pred HHHHHHHHHHHHhC-CC---CCCCCcc--------------cc-----cch---------------------HHHHH---
Confidence 77776665443321 11 1111000 00 000 00000
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~ 272 (484)
.+ ..+...+.+. .+++..... .......+.+.....+ ..+.. - --.+++.
T Consensus 216 ----------------~~-----~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~p~~~~~-~~g~~---~-~~~g~~~ 265 (417)
T PRK10489 216 ----------------GF-----RFLLASPVVG---GIALLGGLL-TMASAVRVLYPALADE-VWQMG---A-AQIGLLY 265 (417)
T ss_pred ----------------HH-----HHHHcChHHH---HHHHHHHHH-HHHHhHHHhhHHHHHh-ccCCC---h-hHhHHHH
Confidence 00 0000001111 111111111 1111111111111111 01111 0 0134445
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
+...+..++...+.+++ .+| .+..+-+.++.++.+++++..... .
T Consensus 266 ~~~~~g~~ig~~~~~~l----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~------------------------~ 310 (417)
T PRK10489 266 AAVPLGAALGALTSGWL----AHS-------ARPGLLMLLSTLGSFLAVGLFGLM------------------------P 310 (417)
T ss_pred HHHHHHHHHHHHHHHHh----hhc-------cCcchHHHHHHHHHHHHHHHHHcc------------------------c
Confidence 55555556655554443 121 112233556666666665544332 1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
+.+......++.+++.....+...+++.+.+|++.||..+|++.....+|..+|+.+.+.+.+..+
T Consensus 311 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-------------- 376 (417)
T PRK10489 311 MWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-------------- 376 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc--------------
Confidence 233344566778888888888888999999999999999999999999999999999988764321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccc
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAM 474 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 474 (484)
....++..+++.++..++.....+++|+++.||-+.|.++
T Consensus 377 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (417)
T PRK10489 377 --PVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD 416 (417)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence 1235555666666666666666677777766665555543
No 10
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.44 E-value=6.8e-12 Score=129.35 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+.+.+++++++.+++.|.+.|...+.+.|.+++++ +.+++++.+...++|..+||.+++++. ++||++.|++.
T Consensus 98 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~ 170 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATG 170 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 45678889999999999999999999999987532 467999999999999999999999998 68999999988
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..++..++.....+.. ++ ++... ..++
T Consensus 171 ~~~~~~~~i~~~~~~~~~---~~--~~~~~-------~~~~--------------------------------------- 199 (400)
T PRK11646 171 AVLFVLAAAFNAWLLPAY---KL--STVRT-------PVRE--------------------------------------- 199 (400)
T ss_pred HHHHHHHHHHHHHhCCcc---cc--cccch-------hhHH---------------------------------------
Confidence 877766654433221110 00 00000 0000
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~ 272 (484)
.++ .-..+ +++. .+.+....++..+.|..........+ . + +.....+++.
T Consensus 200 ----------------~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~---~-~--~~~~~~g~l~ 249 (400)
T PRK11646 200 ----------------GMT----RVLRD-KRFV---TYVLTLTGYYMLAVQVMLMLPIMVND---I-A--GSPSAVKWMY 249 (400)
T ss_pred ----------------HHH----HHHcC-chHH---HHHHHHHHHHHHHHHHHHhhhhhHHh---h-c--CCchHHHHHH
Confidence 000 00001 1111 11111222333333322211111111 0 1 0001123444
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
+++.+..+.......++ ..| | .+..+++..|.++.++++...+..+
T Consensus 250 ~~~~~~~~~~~~~~~~~----~~~---r---~~~~~~~~~~~~~~~~~~~~l~~~~------------------------ 295 (400)
T PRK11646 250 AIEACLSLTLLYPIARW----SEK---R---FRLEHRLMAGLLIMSLSMFPIGMVS------------------------ 295 (400)
T ss_pred HHHHHHHHHHHHHHHHH----HHH---h---cchhHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence 55554444333222332 111 1 2234457777777777766554432
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
+.++++...++.++|+.+..|...+.+.+.+|++.+|.++|+.++..++|..+|+.+++++.+.++. .+
T Consensus 296 ~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~----------~~- 364 (400)
T PRK11646 296 NLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA----------LN- 364 (400)
T ss_pred hHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh----------cC-
Confidence 1233444556788999999999999999999999999999999999999999999999998764310 01
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
.....|...++++++..+.+..
T Consensus 365 -~~~~~~~~~~~~~~~~~~~~~~ 386 (400)
T PRK11646 365 -QPELPWMMLGIIGLITLLALYW 386 (400)
T ss_pred -CcchHHHHHHHHHHHHHHHHHH
Confidence 1234556666666666555443
No 11
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.42 E-value=8.5e-11 Score=120.77 Aligned_cols=278 Identities=15% Similarity=0.105 Sum_probs=162.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.+...|+..+.+.|++++++ |.++++++..+.++|..+|+.+++++.+.+||++.|++.
T Consensus 111 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 184 (399)
T PRK05122 111 SLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLI 184 (399)
T ss_pred HHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45678889999999999999999999999987532 245788888999999999999999988889999888776
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..++..+ +.++ .|+..+.. . +.
T Consensus 185 ~~~~~~~~~---~~~~-----~~~~~~~~-----------------~--~~----------------------------- 208 (399)
T PRK05122 185 MLLALLGLL---LARP-----RPAVPPVK-----------------G--ER----------------------------- 208 (399)
T ss_pred HHHHHHHHH---HHhc-----CCCCCCCC-----------------c--cc-----------------------------
Confidence 554433322 1111 11110000 0 00
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~ 272 (484)
.++ .+..|+.......+ ..+...+....+.......+ .+.. ..+...
T Consensus 209 ---------------~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~ 255 (399)
T PRK05122 209 ---------------LPF-------RRVLGRVWPYGMGL---ALASIGFGTIATFITLYYAA--RGWD------GAALAL 255 (399)
T ss_pred ---------------hhH-------HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--cccc------cchHHH
Confidence 000 01111111111111 11111111111111111111 1111 112223
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
....+..++..++.+++ .+|. +..+.+.++.++.+++++..... .
T Consensus 256 ~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------------------~ 300 (399)
T PRK05122 256 TLFGVAFVGARLLFGNL----INRL-------GGLRVAIVSLLVEILGLLLLWLA------------------------P 300 (399)
T ss_pred HHHHHHHHHHHHHHHHH----HHHh-------ccHHHHHHHHHHHHHHHHHHHHh------------------------c
Confidence 34444445555554443 2332 22334556667777766555442 1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
+.++++...++.|++.....|.....+.+..|++.||..+|+++....+|..+++.+.+.+.+..
T Consensus 301 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~--------------- 365 (399)
T PRK05122 301 SPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF--------------- 365 (399)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------------
Confidence 23345566788999998888888888888999999999999999999999998888887765321
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
.+...|+..++++++..++..+.
T Consensus 366 -g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 366 -GYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHh
Confidence 13456666666666665554443
No 12
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.39 E-value=1.2e-10 Score=120.07 Aligned_cols=85 Identities=14% Similarity=-0.033 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++++.+++.+...|...+.+.|.+++++ +.+..++.+...++|..++|.+++++.++.+|++.|++.
T Consensus 100 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~ 173 (406)
T PRK15402 100 SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLF 173 (406)
T ss_pred cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 45678888999999999988988999999987532 345677788888899999999999998889999999988
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..+++.+..
T Consensus 174 ~~~~~~~~~~~ 184 (406)
T PRK15402 174 AALAALSFFGL 184 (406)
T ss_pred HHHHHHHHHHH
Confidence 87777766543
No 13
>PRK03545 putative arabinose transporter; Provisional
Probab=99.39 E-value=5.4e-11 Score=122.03 Aligned_cols=286 Identities=13% Similarity=0.039 Sum_probs=170.1
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.+++.+.+.|...+++.|++++++ |.++++++..+.++|.+++|.+++++.+++||++.|.+
T Consensus 95 ~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 168 (390)
T PRK03545 95 WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLA 168 (390)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHH
Confidence 356778889999999999999999999999998532 35688899999999999999999999888999999999
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++..+......++ +|++++- . . + +.
T Consensus 169 ~~~~~~l~~~~~~~~~~~----~~~~~~~-~-~-------~------------------------------------~~- 198 (390)
T PRK03545 169 IGGGALITLLLLIKLLPL----LPSEHSG-S-L-------K------------------------------------SL- 198 (390)
T ss_pred HHHHHHHHHHHHHHhCCC----CCCCCcc-h-H-------H------------------------------------HH-
Confidence 887766655443322111 1110000 0 0 0 00
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHh-hHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~-~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~ 270 (484)
.+.-..+.+.. .+..++....++..+..... +.....+++.. ..++
T Consensus 199 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~g~s~~--------~~~~ 245 (390)
T PRK03545 199 ------------------------PLLFRRPALVSLYLLTVVVVTAHFTAYSYIEP-FVQQVAGLSEN--------FATL 245 (390)
T ss_pred ------------------------HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCcc--------HHHH
Confidence 00000011111 11111111222222211111 11100111111 1233
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+.....+..++..++.+++ .+| . ..+++.++..+.++++.......
T Consensus 246 ~~~~~~~~~~~g~~~~g~l----~dr-------~-~~~~~~~~~~~~~~~~~~l~~~~---------------------- 291 (390)
T PRK03545 246 LLLLFGGAGIIGSVLFSRL----GNR-------H-PSGFLLIAIALLLVCLLLLLPAA---------------------- 291 (390)
T ss_pred HHHHHHHHHHHHHHHHHHH----hhc-------c-chhHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 3444444555555554443 122 1 12345566665555554432211
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
.+.++++...++.|++.....+...+.+.+.+| +.++.++|+++....+|..+|+.+++.+.+..
T Consensus 292 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~------------- 356 (390)
T PRK03545 292 -NSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHL------------- 356 (390)
T ss_pred -chHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 234455566788899998888888888888877 47899999999889999999999998876432
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 431 NKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
| +...|+..+++.++++++++...|
T Consensus 357 g---~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 G---LSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred C---hhHHHHHHHHHHHHHHHHHHHHcc
Confidence 1 345677777777777777665543
No 14
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.38 E-value=9.9e-11 Score=120.52 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+.+++.+.+++.|...|...+++.|.+++++ +.+++++++.+.++|.++++.+++.+.+..+|++.|.+.
T Consensus 102 ~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 175 (406)
T PRK11551 102 DFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVG 175 (406)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHH
Confidence 46678889999999999999999999999997532 467899999999999999999998888889999999988
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..++..++.
T Consensus 176 ~~~~~~~~~~~ 186 (406)
T PRK11551 176 GVGPLLLVPLL 186 (406)
T ss_pred HHHHHHHHHHH
Confidence 77666555443
No 15
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.36 E-value=1.3e-10 Score=117.66 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.|...|...+++.|.+++++ |.+++++...+.++|.++++.+++++.++.+|++.|.+.
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 154 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIE 154 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHH
Confidence 56788999999999999999999999999998531 467899999999999999999999988889999999988
Q ss_pred hHHHHHHHHHHH
Q 011513 113 AFMMFLSCAMFF 124 (484)
Q Consensus 113 ~~~~~l~~i~~l 124 (484)
++..++..+..+
T Consensus 155 ~~~~~~~~~~~~ 166 (399)
T TIGR00893 155 GVLGIIWGVLWL 166 (399)
T ss_pred HHHHHHHHHHhh
Confidence 877766665543
No 16
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.36 E-value=7.6e-11 Score=121.19 Aligned_cols=293 Identities=11% Similarity=0.049 Sum_probs=167.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+.+.+++++.+.+++.+ +.|...+.+.|++++++ +.++.++...+.++|.++++.+++++.+..+|++.|.+.
T Consensus 106 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 178 (408)
T PRK09874 106 NIWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFIT 178 (408)
T ss_pred hHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 46678888888998865 45777888888887531 356788888999999999999999998889999999998
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..++..+..+...+.-. ++.+++... ..++ .. .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-------~~~~---------------------------------~~---~ 213 (408)
T PRK09874 179 ASVLFLCFLVTLFCIRENF--QPVSKKEML-------HMRE---------------------------------VV---T 213 (408)
T ss_pred HHHHHHHHHHHHHHhccCc--ccccchhhh-------HHHH---------------------------------HH---H
Confidence 8877766654433221100 010000000 0000 00 0
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~ 272 (484)
. .++.+.. +.++.....+........+.+.....+...... ....-.+.+.
T Consensus 214 ----------------~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~ 264 (408)
T PRK09874 214 ----------------S--------LKNPKLV---LSLFVTTLIIQVATGSIAPILTLYVRELAGNVS--NIAFISGMIA 264 (408)
T ss_pred ----------------h--------CcCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHH
Confidence 0 0000111 111111122222222222212111111111100 0000012233
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
.+..+..++..|+.+++ .+|+ ...+-+.+++++.+++++..... .
T Consensus 265 ~~~~l~~~~~~~~~g~l----~dr~-------g~~~~~~~~~~~~~~~~~~~~~~------------------------~ 309 (408)
T PRK09874 265 SVPGVAALLSAPRLGKL----GDRI-------GPEKILITALIFSVLLLIPMSFV------------------------Q 309 (408)
T ss_pred HHHHHHHHHHHHHHHHH----Hhcc-------ccchhHHHHHHHHHHHHHHHHHh------------------------c
Confidence 34444455555555553 2332 22233445555555555443322 1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
+.+++....++.|+++....|...+.+.+.+|++.+|..+|++.....+|..+|+.+++.+.+.. +
T Consensus 310 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~------g-------- 375 (408)
T PRK09874 310 TPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY------G-------- 375 (408)
T ss_pred cHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc------c--------
Confidence 23344455678899999999999999999999999999999999999999999999998875422 1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLLCA 457 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~~~ 457 (484)
+...|.+.+++.+++.+...+..
T Consensus 376 --~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 376 --FRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777766555443
No 17
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.34 E-value=2.3e-10 Score=117.20 Aligned_cols=282 Identities=12% Similarity=0.007 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++++.+.+.+.+...|...++..+. ++ + +...++......++|.+++|.+++++.+++||+..|.+
T Consensus 92 ~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~-~~----~---~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~ 163 (382)
T TIGR00902 92 HNAWLLFIAIGLFALFFSAGMPIGDALANTW-QK----Q---FGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAI 163 (382)
T ss_pred hhHHHHHHHHHHHHHHHccchhHHHHHHHHH-HH----H---cCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3567788888888999988889888886543 21 1 24578889999999999999999999999999999987
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++..+.+. ..+. .+|+++.. +.+ . . ..
T Consensus 164 ~~~~~~~~~~~~~-~~~~---~~~~~~~~--------------------~~~-------------~----~---~~---- 195 (382)
T TIGR00902 164 LTAGLAFMLIGFL-IKPT---IPPKDAIP--------------------EDE-------------S----Q---GD---- 195 (382)
T ss_pred HHHHHHHHHHHHH-cCCC---CCCCcccc--------------------ccc-------------c----c---cc----
Confidence 6654333322222 1110 01110000 000 0 0 00
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 271 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~ 271 (484)
..+ .+.-..|++ ..+.+...+++..+.+..+.....-. |.... +.-.+.+
T Consensus 196 ----------------~~~-----~~~l~~~~~---~~~l~~~~l~~~~~~~~~~~~~~~l~--~~g~s----~~~~g~l 245 (382)
T TIGR00902 196 ----------------SAF-----IALLKNPMN---LRFLAAVCLIQGAHAAYYGFSAIYWQ--AAGIS----ASATGLL 245 (382)
T ss_pred ----------------hhH-----HHHHcChHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HCCCC----HhHHHHH
Confidence 000 000001222 22223333344444444442221111 11111 0112344
Q ss_pred chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513 272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 351 (484)
Q Consensus 272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 351 (484)
..+..+..++..++.+++ .+| .++.+-+.+|.++.++.++..++.+
T Consensus 246 ~~~~~~~~i~~~~~~~~l----~~r-------~g~~~~l~~~~~~~~~~~~~~~~~~----------------------- 291 (382)
T TIGR00902 246 WGIGVLAEIIIFAFSNKL----FQN-------CSARDLLLISAIACVGRWAIIGAIE----------------------- 291 (382)
T ss_pred HHHHHHHHHHHHHHhHHH----Hhh-------CCHHHHHHHHHHHHHHHHHHHHhHh-----------------------
Confidence 455555555555554443 333 4455557788888888887765542
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
+.++++..-++.+++..+..+....++.+. |++.++.++|+++ +..++|..+++.+++.+.+..
T Consensus 292 -~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------------- 356 (382)
T TIGR00902 292 -AFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------------- 356 (382)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 344555556999999999999999999998 9999999999986 567899999999999886432
Q ss_pred cCchhHHHHHHHHHHHHHHHHH
Q 011513 431 NKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~ 452 (484)
+ ...|+..++++++++++
T Consensus 357 g----~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 357 G----AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred c----HHHHHHHHHHHHHHHHH
Confidence 1 24577777777765443
No 18
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.34 E-value=2.2e-10 Score=121.38 Aligned_cols=267 Identities=13% Similarity=0.051 Sum_probs=166.1
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++..++++++.+...|..++++.+..++++ +.++.++.....|+.-++||.++|.+....|-.+.|++
T Consensus 101 ~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~i 174 (524)
T PF05977_consen 101 LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLI 174 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 456788888999999999999999999999998643 56788899999999999999999998887898999999
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..+++...++..++.. +++..+-.+..+-++...| +
T Consensus 175 nalsfl~~i~~l~~~~~~~---~~~~~~~e~~~~~l~~G~r----------------------------------y---- 213 (524)
T PF05977_consen 175 NALSFLISILALLRWKPPP---PPSSLPRERFFSALREGLR----------------------------------Y---- 213 (524)
T ss_pred HHHHHHHHHHHHHHccccc---cccccchhhhhhhHHHHHH----------------------------------H----
Confidence 9998888766554333221 1111111111110000000 0
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~g~~i~~~~ 270 (484)
+...+.+...+. ...++.....-....+.... +.++. + ..-.+.
T Consensus 214 --------------------------v~~~~~l~~~l~---~~~~~~l~~~a~~aLlPl~a~~~l~~--~----a~~yGl 258 (524)
T PF05977_consen 214 --------------------------VRSSPPLRSVLL---RSFLFNLFASAVWALLPLFARDVLGG--G----ASGYGL 258 (524)
T ss_pred --------------------------HhcchHHHHHHH---HHHHHHHhhhHHHHhhhHHHHHHhCC--c----HHHHHH
Confidence 000111111111 11111111111111111112 22221 1 011244
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+.+.-++..++..-+..+ +++ + .+..+-+..+.++.+++++.+++.
T Consensus 259 l~a~~gvGai~Gal~~~~-----l~~---~---~~~~~lv~~~~~~~a~~~~~lal~----------------------- 304 (524)
T PF05977_consen 259 LLAAFGVGAILGALLLPR-----LRR---R---LSSRRLVLLASLLFALALLLLALS----------------------- 304 (524)
T ss_pred HHHHHHHHHHHHHHHHHH-----hhc---c---cCcchhhHHHHHHHHHHHHHHhcc-----------------------
Confidence 444445555555443333 333 1 333344566777777776666553
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.|..++..++.|.+...........+.+.+|+++||+.++++......+..+|..+.+.+.+
T Consensus 305 -~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~ 368 (524)
T PF05977_consen 305 -PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLAD 368 (524)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556677889999999999999999999999999999999998888888888888888764
No 19
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.33 E-value=1.1e-10 Score=117.57 Aligned_cols=269 Identities=9% Similarity=0.041 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+.+.+++++.+.+++.+...|...+++.|.+++++ +.++++++..+.++|.++++.+++++.+..||++.|.+.
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 56788999999999999999999999999998531 467999999999999999999999998889999999988
Q ss_pred hHHHHHHHHHHHhccceeeecCC-CCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKP-EGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p-~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
++..+++.+..+..+.. ++++ +..+... + .....
T Consensus 165 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-----------------------------------------~~~~~ 199 (365)
T TIGR00900 165 AVGFAISALLIVSVRIP--ELAASEIQALSN--A-----------------------------------------VLRDT 199 (365)
T ss_pred HHHHHHHHHHHHhcccc--cCCCccccccch--h-----------------------------------------HHHHH
Confidence 77766665543322111 0000 0000000 0 00000
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh-hHHHHHH-HhcCCCCCCcccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ-TYVVFQA-LQSDRRVGNTHFKIPAA 269 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~-t~~~~q~-~~~~~~~g~~g~~i~~~ 269 (484)
.+..++.++-..+..+.+....+...+.... +...... +..+.+ ....+
T Consensus 200 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 250 (365)
T TIGR00900 200 -----------------------REGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG------STHYG 250 (365)
T ss_pred -----------------------HhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc------hHHHH
Confidence 0000000000011122222222222222111 1111111 111111 01123
Q ss_pred ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
.+.....+..++..++..++ .+|. ...+-+.+++++.++++....+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 298 (365)
T TIGR00900 251 WVLAAFGLGALLGALLLGLL----GRYF-------KRMALMTGAIFVIGLAILVVGLTP--------------------- 298 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------chhHHHHHHHHHHHHHHHHHHhhc---------------------
Confidence 44455555555555555543 2221 122234455555666555544321
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+ +.+++....++.+++.....+...+++.+..|++.||..+|+++....+|..+++.+++.+.+
T Consensus 299 -~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 299 -P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred -h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 244556677899999999999999999999999999999999999999999999999887653
No 20
>PRK10054 putative transporter; Provisional
Probab=99.33 E-value=6.5e-11 Score=121.85 Aligned_cols=261 Identities=11% Similarity=-0.005 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 113 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~ 113 (484)
...+++++.+.+.+.+.+.|...+...|.+++++ +.+++++.|...|+|.+++|.+++++.+ +||+..|.+.+
T Consensus 96 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~ 168 (395)
T PRK10054 96 VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAA 168 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHH
Confidence 4455666667777778888889999999987531 4679999999999999999999999875 79999999888
Q ss_pred HHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccccc
Q 011513 114 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAI 193 (484)
Q Consensus 114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i 193 (484)
+..+++.+...+..++. +++++++... . + +...
T Consensus 169 ~~~~i~~i~~~~~~~~~--~~~~~~~~~~----------~---------------------------------~-~~~~- 201 (395)
T PRK10054 169 ICSAFPLVFIQIWVQRS--EKAIATETGS----------V---------------------------------W-SPSV- 201 (395)
T ss_pred HHHHHHHHHHHHHHhcc--ccccccchhh----------h---------------------------------h-hhhh-
Confidence 87777655433222111 1111000000 0 0 0000
Q ss_pred cCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh---hHHHHHHHhcCCCCCCccccccccc
Q 011513 194 MTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ---TYVVFQALQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 194 ~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~---t~~~~q~~~~~~~~g~~g~~i~~~~ 270 (484)
.-..|++ ..+.+...+....+.... ..+.. . ..+.... +-..+.
T Consensus 202 ------------------------~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~----~~~~g~ 248 (395)
T PRK10054 202 ------------------------LLQDKAL---LWFTCSGFLASFVSGAFASCISQYVM-V-VADSDFA----EKVVAV 248 (395)
T ss_pred ------------------------hccCcee---hHHHHHHHHHHHHHHHhhhhHHHHHH-H-hcccchH----HHHHHH
Confidence 0000111 111111121111111111 11211 1 1111110 011234
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+...+.+..+.+.+..+++ .+| .++.+.+.+|+++.++++....+..
T Consensus 249 ~~~~~~~~~~~~~~~~g~~----~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~---------------------- 295 (395)
T PRK10054 249 VLPVNAAMVVSLQYSVGRR----LNA-------ANIRPLMTAGTLCFVIGLVGFIFSG---------------------- 295 (395)
T ss_pred HHHhhhhheeeehhHHHHH----Hcc-------CCchhHHHHHHHHHHHHHHHHHHcc----------------------
Confidence 4555555555555544442 222 2233456677777777766554321
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 416 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~ 416 (484)
.+.+.+....++.++||....|...+.+.+.+|++++|.+.|... ...+|..+|+.+++.+.+.
T Consensus 296 -~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~ 359 (395)
T PRK10054 296 -NSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTT 359 (395)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 122223345689999999999999999999999999999998755 4558889999998887653
No 21
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.33 E-value=3.1e-10 Score=116.16 Aligned_cols=262 Identities=11% Similarity=0.025 Sum_probs=153.2
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++.+.+.+++.+...|...++..|..++ +.+.+++.....++|.++||.+++++.+++||+..|++
T Consensus 92 ~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~ 163 (382)
T PRK11128 92 HSFWLLFVAIGLFNLFFSPLVPLTDALANTWQKQ--------IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWI 163 (382)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHHHHHHHHHhh--------ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHH
Confidence 3466777888889999999999888888876221 13466677788899999999999999998999999988
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++..+... ..+ +.+|++++. +. . + + . .
T Consensus 164 ~~~~~~~~~~~~~-~~~---~~~~~~~~~-------------~~---~--~--------------~-----~---~---- 195 (382)
T PRK11128 164 LTAGVASMLLGQL-LRP---TIMPQGESR-------------QQ---E--S--------------A-----G---W---- 195 (382)
T ss_pred HHHHHHHHHHHHH-ccC---CCCCccccc-------------cc---c--c--------------c-----c---c----
Confidence 7765554443222 111 111111000 00 0 0 0 0 0
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 271 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~ 271 (484)
..+ .+.-..|++ +.+.+...+....+.+..+.......+. ... +-..+.+
T Consensus 196 ----------------~~~-----~~i~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~--g~s----~~~~g~~ 245 (382)
T PRK11128 196 ----------------PAW-----KALLKEPTV---WRFLLCVSLLQGSHAAYYGFSAIYWQAA--GYS----ASTIGYL 245 (382)
T ss_pred ----------------chH-----HHHHcChhH---HHHHHHHHHHHHHhHhHHHHHHHHHHHC--CCC----HhHHHHH
Confidence 000 001111222 2222222222233322222221111211 111 0113445
Q ss_pred chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513 272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 351 (484)
Q Consensus 272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 351 (484)
..++.+..++...+.+++ .+| .+..+.+.+++++.+++++..+..
T Consensus 246 ~~~~~~~~~~~~~~~g~l----~~r-------~~~~~~l~~~~~~~~~~~~~~~~~------------------------ 290 (382)
T PRK11128 246 WSLGVVAEVLIFAFSNRL----FRR-------WSARDLLLLSAICGVVRWGLMGST------------------------ 290 (382)
T ss_pred HHHHHHHHHHHHHHHHHH----HHH-------CCHHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence 556666666666655553 333 334445677777777776655443
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.++++.+..+....++.++. ++.++.++++.+ +..++|..+|+.+++.+.+
T Consensus 291 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 291 TALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23455666778899999999999999988874 555688999886 5667888899999888764
No 22
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.32 E-value=5.1e-10 Score=117.61 Aligned_cols=84 Identities=10% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchhh
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIP 112 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i~ 112 (484)
...+++.+++.+++.|...|...+.+.+++++++ +.++.++++.+.++|.++++.+++++.+. .||++.|.+.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 4568889999999999999999999999998532 46789999999999999999999999887 4999999998
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..++..+++
T Consensus 205 ~~~~~~~~~~~ 215 (465)
T TIGR00894 205 GIVGCAWSLLW 215 (465)
T ss_pred hHHHHHHHHHH
Confidence 88766655443
No 23
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.29 E-value=9.6e-11 Score=117.37 Aligned_cols=266 Identities=18% Similarity=0.197 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+.+.+++++++.++|.+...|...+++.|.+++++ +.+.+++.+.+.++|.++++.+++++.+++||++.|++.
T Consensus 84 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~ 157 (352)
T PF07690_consen 84 NFWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLIS 157 (352)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHH
T ss_pred hHHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhhhcccchhhhhhhccccccccccc
Confidence 34479999999999999999999999999999732 467999999999999999999999999889999999999
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..++..++.....+. ++++.... + +.+.+ . .....+.+
T Consensus 158 ~~~~~~~~il~~~~~~~---~~~~~~~~-------------~----~~~~~-----~------------~~~~~~~~--- 197 (352)
T PF07690_consen 158 AILSLIAAILFILFLPE---PPPPRERE-------------S----PKESE-----S------------KKPKPLKP--- 197 (352)
T ss_dssp HHHHHHHHHHHHCCC------STTTT---------------S----STTTT-------------------HHHCCCH---
T ss_pred cchhhhhhhhHhhhhhh---cccccccc-------------c----ccccc-----c------------cccccccc---
Confidence 99988887653332211 11111000 0 00000 0 00000000
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHH---HHHHhcCCCCCCcccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVV---FQALQSDRRVGNTHFKIPAA 269 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~---~q~~~~~~~~g~~g~~i~~~ 269 (484)
.+ ....+.+.+ ..++.........+....+... .+..+.+ + ....+
T Consensus 198 ----------------~~-----~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~----~~~~~ 246 (352)
T PF07690_consen 198 ----------------GF-----KSLFKNPVL---WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFS---G----PSQAG 246 (352)
T ss_dssp -----------------C-----THHHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCC---T----HHHHH
T ss_pred ----------------cc-----ccccccchh---hhhhhhhhHHHHHHHHhhcccchhhhhccCCC---H----HHHHH
Confidence 01 001111111 1122222222222222222111 1122222 0 01123
Q ss_pred ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
.+..+..+..++..++.+++ .+|. +..++..+......++.+...+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~l----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 295 (352)
T PF07690_consen 247 LLFSIFGIVGIIGSLLAGRL----SDRF-------GRRRRLLIAILLLILGALGLLLLPF-------------------- 295 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHT-------TCHHHHHHHHHHHHHHHHHHCCSHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHHH--------------------
Confidence 34455555555556666664 3342 2233444444444444444433221
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHH
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNG 407 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~ 407 (484)
..+..|.....++.|++..+..+...+++.+.+|++.+|.++|+.+...++|..+||
T Consensus 296 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 -SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp -HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 124556666778899999999999999999999999999999999999999999886
No 24
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.28 E-value=2.5e-10 Score=133.08 Aligned_cols=288 Identities=10% Similarity=0.007 Sum_probs=161.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++++++.+++.+++.|...+++.|.+++++ +..+.+++.++.++|.++||++++++....||++.|.+
T Consensus 106 ~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~ 179 (1140)
T PRK06814 106 NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVAL 179 (1140)
T ss_pred hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 357789999999999999999999999999998642 35699999999999999999999999888999988844
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++++++.+. .+. .+++....+. . . ......
T Consensus 180 ~~~~~~~~~~~~~~-~~~---~~~~~~~~~~----------------~--~-----------------------~~~~~~ 214 (1140)
T PRK06814 180 LMGIAVLGWLASLF-IPK---TGNAAPDLKI----------------D--R-----------------------NIIRST 214 (1140)
T ss_pred HHHHHHHHHHHHhh-CCC---CCCCCCCCee----------------c--c-----------------------chHHHH
Confidence 44433333332221 111 1111000000 0 0 000000
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCCCccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g~~g~~i~~~~ 270 (484)
. ..++ .+...+.+ ..+.+....++.++....+.+.... ...... ..-.++
T Consensus 215 ~---------------~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~------~~~~g~ 265 (1140)
T PRK06814 215 I---------------TLLK-----YAKADKRI---WLAILGISWFWLVGAVVLSQLPLLAKETLGGD------ENVATL 265 (1140)
T ss_pred H---------------HHHH-----HHhcCchH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc------hHHHHH
Confidence 0 0000 00000111 1111222222222222222111111 111111 011356
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+.+...+..++...+.+++ .++. ...+.+.+|.++.+++.+.+.+.... ....... ...-..-..
T Consensus 266 ~~~~~~~g~~ig~~~~g~l----~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~-~~~~~~~~~ 330 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKL----SEGR-------ITLLYVPIGALLMGLFGLDLAFASSS---VPAEPAQ-LKSILVFLS 330 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHH----hCCc-------eeeeeehHHHHHHHHHHHHHHhcccc---ccccccc-ccchhhhhc
Confidence 6677777777777776664 2221 11223444555444444433321000 0000000 000000000
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.|++++.+++.|++..+..+...+++.+.+|++++|.++|++++...+|..+++.+++.+.
T Consensus 331 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 331 KRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345566778889999999999999999999999999999999999999999999999888775
No 25
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.28 E-value=4.5e-10 Score=112.02 Aligned_cols=263 Identities=18% Similarity=0.231 Sum_probs=179.6
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.+++.+...|...++..|.+++++ |...+++.+.+.++|..+++.+++++.++.+|++.|.+
T Consensus 85 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 158 (352)
T cd06174 85 SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLI 158 (352)
T ss_pred ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 356788899999999999999999999999998632 35789999999999999999999999998899999999
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++..+...... +.
T Consensus 159 ~~~~~~~~~~~~~~~~-------------~~------------------------------------------------- 176 (352)
T cd06174 159 LAILGLLLALLLLFLL-------------RL------------------------------------------------- 176 (352)
T ss_pred HHHHHHHHHHHHHHHH-------------HH-------------------------------------------------
Confidence 8888777766543211 00
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHH-HHHhcCCCCCCccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVF-QALQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~-q~~~~~~~~g~~g~~i~~~~ 270 (484)
+ ..+.+....+...+......... ..+..+ .. ....++
T Consensus 177 --------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~ 215 (352)
T cd06174 177 --------------------------------L---LLLALAFFLLSFGYYGLLTYLPLYLQEVLG--LS----AAEAGL 215 (352)
T ss_pred --------------------------------H---HHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CC----HHHHHH
Confidence 0 00001111111111111111110 011111 11 112345
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQ-RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~-ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
+.....+..++..++..++ .+|.++| + .+.++.++.+++++.....+
T Consensus 216 ~~~~~~~~~~i~~~~~~~~----~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~--------------------- 263 (352)
T cd06174 216 LLSLFGLGGILGALLGGLL----SDRLGRR-------RLLLLIGLLLAALGLLLLALAP--------------------- 263 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhh-------hHHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 5666677777777776664 3443321 2 46677777777777665531
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcC
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPED 429 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ 429 (484)
+.+++....++.++++....+...+++.+..|++.|+..+|++.....+|..+++.+.+.+.+.. +
T Consensus 264 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~------~----- 329 (352)
T cd06174 264 ---SLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTG------G----- 329 (352)
T ss_pred ---cHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------C-----
Confidence 24566678899999999999999999999999999999999999999999999999998875321 1
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHH
Q 011513 430 LNKGRLDYFYYLVAALGLLNFGFFL 454 (484)
Q Consensus 430 ln~~~~~~~f~~la~l~~~~~i~~~ 454 (484)
....|.+.+++.++..+++.
T Consensus 330 -----~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 330 -----YGGVFLILAALALLAALLLL 349 (352)
T ss_pred -----cchHHHHHHHHHHHHHHHhe
Confidence 23456666777666665543
No 26
>PRK12382 putative transporter; Provisional
Probab=99.28 E-value=9.6e-10 Score=112.72 Aligned_cols=277 Identities=12% Similarity=0.090 Sum_probs=163.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.++|.+...|...+.+.|.+++++ |.++++++..+.++|.+++|.+++++.+.+||++.+.+
T Consensus 110 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~ 183 (392)
T PRK12382 110 FKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALT 183 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHH
Confidence 456788999999999999999999899999987532 35688888899999999999999999888899877665
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
..+..++.. ++. ++.++.+++++. + +
T Consensus 184 ~~~~~~~~~---~~~-~~~~~~~~~~~~-------------~-----~-------------------------------- 209 (392)
T PRK12382 184 TMVLPLLAW---AFN-GTVRKVPAHAGE-------------R-----P-------------------------------- 209 (392)
T ss_pred HHHHHHHHH---HHH-HhccCCCCCccc-------------C-----c--------------------------------
Confidence 444322222 111 111100000000 0 0
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHh-hHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIR-VIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~-~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~ 270 (484)
++ .+..|.+.+ .+.+.+....+.......+ .+. +. .... ..+.
T Consensus 210 -----------------~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~-~~----~~~~------~~~~ 253 (392)
T PRK12382 210 -----------------SL-------WSVVGLIWKPGLGLALQGVGFAVIGTFVS-LYF-AS----KGWA------MAGF 253 (392)
T ss_pred -----------------hH-------HHHHHHHHHhHHHHHHHHHHHhHHHHHHH-HHH-Hh----cCCc------hhHH
Confidence 00 000011000 0111111111222111111 111 11 1111 1122
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
......+..++..++.+++ .+|.. ..+.+.++..+.+++++.....
T Consensus 254 ~~~~~~~~~~~~~~~~g~l----~~r~g-------~~~~~~~~~~~~~~~~~~~~~~----------------------- 299 (392)
T PRK12382 254 TLTAFGGAFVLMRVLFGWM----PDRFG-------GVKVAIVSLLVETVGLLLLWLA----------------------- 299 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcC-------CCeehHHHHHHHHHHHHHHHHc-----------------------
Confidence 2333444455555665554 23322 2233556777777766654432
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
.+.++.....++.++++....|.....+.+..|++.||..+|+++....+|+.+++.+.+.+.+.. +
T Consensus 300 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~------g------ 366 (392)
T PRK12382 300 -PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF------G------ 366 (392)
T ss_pred -ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------C------
Confidence 123344556788899998888888888899999999999999999999999999999998876432 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHH
Q 011513 431 NKGRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
+...|.+.+++.++..++...
T Consensus 367 ----~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 367 ----YPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred ----chHHHHHHHHHHHHHHHHHHh
Confidence 245667777776666655543
No 27
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.27 E-value=7e-10 Score=115.60 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh---eeeeecccccccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI---VYVQSDVSWAWGL 109 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~---~~l~~~~g~~~~F 109 (484)
+.+.+++++.+.++|.|...+...++++|.+++++ |..++++++.+.++|.++++.++ +.+.+..+|++.|
T Consensus 126 ~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f 199 (481)
T TIGR00879 126 SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPL 199 (481)
T ss_pred chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHH
Confidence 34678999999999999999999999999998642 35688899999999999999998 7777778999999
Q ss_pred hhhhHHHHHHHHHH
Q 011513 110 GIPAFMMFLSCAMF 123 (484)
Q Consensus 110 ~i~~~~~~l~~i~~ 123 (484)
++.++..++..+..
T Consensus 200 ~~~~~~~~~~~~~~ 213 (481)
T TIGR00879 200 GLQLIPAGLLFLGL 213 (481)
T ss_pred HHHHHHHHHHHHHH
Confidence 99766655554443
No 28
>PRK10504 putative transporter; Provisional
Probab=99.27 E-value=9.2e-10 Score=115.78 Aligned_cols=87 Identities=10% Similarity=0.078 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.|...|...+.+.|.+++++ +..++++...+.++|..+||.+++++.++.||++.|.+.
T Consensus 97 ~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~ 170 (471)
T PRK10504 97 TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLIN 170 (471)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHH
Confidence 45678889999999999999999999999987421 356888889999999999999999999989999999988
Q ss_pred hHHHHHHHHHHHh
Q 011513 113 AFMMFLSCAMFFL 125 (484)
Q Consensus 113 ~~~~~l~~i~~l~ 125 (484)
.....+..+....
T Consensus 171 ~~~~~l~~~~~~~ 183 (471)
T PRK10504 171 IPVGIIGAIATLM 183 (471)
T ss_pred HHHHHHHHHHHHH
Confidence 7766666655443
No 29
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.25 E-value=7.3e-10 Score=117.50 Aligned_cols=310 Identities=14% Similarity=0.089 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.++|.|++.|...+.+.+.+++++ +|.++++++..+.++|..+||.+++++.+++||++.|++
T Consensus 92 ~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~-----~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i 166 (495)
T PRK14995 92 PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEK-----QRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLI 166 (495)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHH
Confidence 357789999999999999999988888888875421 146799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHH------HHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTV------QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 185 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~------~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (484)
.....++.+++.+...+.-.+++.++....... ..+..+.+..... ...... ..
T Consensus 167 ~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~-~~~~~~-------------------~~ 226 (495)
T PRK14995 167 NVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKG-FLSLWV-------------------TS 226 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhcccc-CCchHH-------------------HH
Confidence 877766665554333222111111111111100 0011111110000 000000 00
Q ss_pred ccccccc--ccCCc-cccccCCCCCCCcccCcchhHHHHHHhHhh-HHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCC
Q 011513 186 RCLDKAA--IMTPE-DQIKSDGSAINPWRLSSMQKVEEVKVLIRV-IPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN 261 (484)
Q Consensus 186 ~~l~~a~--i~~~~-~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~-l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~ 261 (484)
..+-... ..... .+.. ......++++.+ .+.+... +..+.....+.. +......+.++..+.+.
T Consensus 227 ~~~~~~~~~l~~f~~~e~~-~~~p~~~~~lf~------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~lq~v~g~s~---- 294 (495)
T PRK14995 227 LTLLTGALLLGLFIRTQLA-ASRPMIDMRLFT------HRIILSGVVMAMTAMITLVG-FELLMAQELQFVHGLSP---- 294 (495)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCCCCcCHHHhC------CcccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCH----
Confidence 0000000 00000 0000 000000111000 0111110 111111111111 10111111111111111
Q ss_pred ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Q 011513 262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVG 341 (484)
Q Consensus 262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~ 341 (484)
...+.+.....+...+..|+.+++ .+|.+ ..+-+..|+++.+++++.......
T Consensus 295 ----~~ag~~~~~~~~~~~~~~~~~g~l----~~r~g-------~~~~~~~g~~~~~~~~~~l~~~~~------------ 347 (495)
T PRK14995 295 ----LEAGMFMLPVMVASGFSGPIAGIL----VSRLG-------LRLVATGGMALSALSFYGLAMTDF------------ 347 (495)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHH----HHHcC-------chHHHHHHHHHHHHHHHHHHHhcC------------
Confidence 123344444456666677777664 34432 223356688777777765544321
Q ss_pred ccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 342 LEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 342 ~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.++.....++.|+|-.+..+.....+.+.+|++.+|..+|++++...+|..+|..+.+.+.
T Consensus 348 ---------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~ 411 (495)
T PRK14995 348 ---------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLL 411 (495)
T ss_pred ---------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344456788899999999888999999999999999999999999999999888877764
No 30
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.24 E-value=2.2e-10 Score=120.24 Aligned_cols=285 Identities=12% Similarity=0.008 Sum_probs=154.1
Q ss_pred HHHHHHH-HHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 34 LAFLFTG-LGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 34 ~~~~~~~-l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
...++++ +++.++|.|...+...+.+.+.+++ + |.++.++.+.+.++|..+++.+.+++.+.+||+++|++.
T Consensus 107 ~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~----~---r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~ 179 (455)
T TIGR00892 107 VIELYLTAGFITGLGLAFNFQPSLTMLGKYFYR----R---RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLIL 179 (455)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHh----h---HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 3444443 4677889887656666778888742 1 357889999999999999999999998889999999999
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..++..+..++.++.-. .++..+... +.. ..+... . ..... .+..+.
T Consensus 180 ~~~~~~~~v~~~~~~~~~~--~~~~~~~~~----------~~~-~~~~~~-----~--------~~~~~---~~~~~~-- 228 (455)
T TIGR00892 180 GGLLLHCCVCGALMRPVGP--SQRVSKSKS----------KEG-LPPDGS-----T--------KKLSK---KSTAEK-- 228 (455)
T ss_pred HHHHHHHHHHHHHhCCCCc--ccccccccc----------ccc-CCCCCc-----c--------ccccc---cchhhh--
Confidence 9887766654443322100 000000000 000 000000 0 00000 000000
Q ss_pred ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccc
Q 011513 193 IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYA 272 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~ 272 (484)
..++ ...+.-..+.+ ....+...+....+....+.+..... +.... ....+.+.
T Consensus 229 --------------~~~~---~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~l~~~~~--~~g~s----~~~~g~~~ 282 (455)
T TIGR00892 229 --------------INRF---LDFSLFTHRGF---LVYLSGNVIMFLGFFAPIIFLVPYAK--DKGVD----EYEAAFLL 282 (455)
T ss_pred --------------hhhh---cchHHhcCchH---HHHHHHHHHHHHHccchHHHHHHHHH--HcCCC----HHHHHHHH
Confidence 0000 00000001111 11112222222222222221111111 11111 11234555
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH--HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR--MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k--i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
++..+..++..|+..++. +|.. ....++ +.+++++.+++++.....
T Consensus 283 ~~~~~~~~~~~~~~g~l~----d~~~-----~~~~~~~~~~~~~~~~~l~~ll~~~~----------------------- 330 (455)
T TIGR00892 283 SIIGFVDIFARPSCGLIA----GLKW-----IRPHVQYLFSFALLFNGLTHLLCALA----------------------- 330 (455)
T ss_pred HHHHHHHHHHHHHHHHHh----cccc-----cCHHHHHHHHHHHHHHHHHHHHHHHh-----------------------
Confidence 666677777777766642 2210 112222 333444444443332221
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.|++.....+...+.+.+.+|++.+|..+|+++...++|+.+|+.+.+.+.+
T Consensus 331 -~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~ 394 (455)
T TIGR00892 331 -GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVD 394 (455)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeeh
Confidence 2344556667888999988899999999999999999999999999999999999999987764
No 31
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.24 E-value=7.8e-10 Score=116.47 Aligned_cols=308 Identities=11% Similarity=0.057 Sum_probs=167.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.|...|...+++.|.+++++ |.+++++++.+.++|..+|+.+++++.+++||++.|++.
T Consensus 89 ~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~ 162 (485)
T TIGR00711 89 NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLIN 162 (485)
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhh
Confidence 56778899999999999999999999999998531 467899999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHH--------HHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQ--------VFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQ 184 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~--------vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (484)
++..++..++.++..+.-+ +.+..+...... .+.....+... . -|... ..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~----~----~~~~~------------~~ 220 (485)
T TIGR00711 163 VPIGIIVVVVAFFILPRDK--PAASENFDFLGLLLLSVGLGSLLYGLSEGPE----R----GWFDS------------NE 220 (485)
T ss_pred hHHHHHHHHHHHHHcCCcc--ccccCCCcHHHHHHHHHHHHHHHHHHhhCCC----C----CCCCc------------hH
Confidence 8776666655433322211 111111110000 00011111000 0 00000 00
Q ss_pred cccccc-cc--ccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHH-HhcCCCCC
Q 011513 185 FRCLDK-AA--IMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQA-LQSDRRVG 260 (484)
Q Consensus 185 ~~~l~~-a~--i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~-~~~~~~~g 260 (484)
...... .. ....... +... ..+. .+.+.-..+.+ ....+........+........... +..+.+
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~---~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s-- 289 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVW-ELTD--DNPL---VDLRLFKYRNF---TIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYT-- 289 (485)
T ss_pred HHHHHHHHHHHHHHHHHH-HHcC--CCCc---cCHHHHcCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 000000 00 0000000 0000 0000 00000000111 1111111222222211111111111 111111
Q ss_pred CccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 011513 261 NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPV 340 (484)
Q Consensus 261 ~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~ 340 (484)
....+++.....+..++..|+..++ .+|. +..+-+.+|.++.++++....+.-.
T Consensus 290 ----~~~~g~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~g~~~~~~~~~~~~~~~~----------- 343 (485)
T TIGR00711 290 ----ALQAGLHILPVGLAPMLSSPIAGRM----GDKI-------DPRKLVTIGLILYAVGFYWRAFTFT----------- 343 (485)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHH----Hhhc-------CcHHHHHHHHHHHHHHHHHHhccCC-----------
Confidence 0112445555666777777776664 2332 2223456677777777666542110
Q ss_pred cccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 341 GLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 341 ~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
...+.++++...++.|+|..+..+.......+..|++.+|..+|+.++...+|+.+|+.+.+.+.
T Consensus 344 ---------~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~ 408 (485)
T TIGR00711 344 ---------PDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTIL 408 (485)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344455566788999999888888888888899999999999999999999999988877764
No 32
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.22 E-value=3.6e-09 Score=112.10 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee-cccccccch
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS-DVSWAWGLG 110 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~-~~g~~~~F~ 110 (484)
.+...+++.+.+.+++.+...+...++..|.+++++ +.++..+.-.+.++|.++++.+++++.+ ..||+..|+
T Consensus 105 ~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~ 178 (491)
T PRK11010 105 TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYW 178 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 456678888889999999999999999999998532 3567778889999999999999998888 479999999
Q ss_pred hhhHHHHHHHHHH
Q 011513 111 IPAFMMFLSCAMF 123 (484)
Q Consensus 111 i~~~~~~l~~i~~ 123 (484)
+.++.+++..+..
T Consensus 179 i~a~l~ll~~l~~ 191 (491)
T PRK11010 179 LMAALLIPCIIAT 191 (491)
T ss_pred HHHHHHHHHHHHH
Confidence 9887777665443
No 33
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.21 E-value=6.4e-10 Score=116.01 Aligned_cols=304 Identities=16% Similarity=0.218 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchhhh
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPA 113 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i~~ 113 (484)
..+.+.+++.|++.|...|++..+.+++.|.++ +..+.++.+.+..+|.+++..++|++-+. .||+..|++.+
T Consensus 129 ~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g 202 (466)
T KOG2532|consen 129 YLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFG 202 (466)
T ss_pred hhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHH
Confidence 367899999999999999999999999999642 47899999999999999999999999888 99999999998
Q ss_pred HHHHHHHHHHHhccceeeecCCCCCchhhHH--HHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 114 FMMFLSCAMFFLGSRLYAKVKPEGSPLASTV--QVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 114 ~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~--~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
++.++..++++.. |.+ .|+++|..... +.+. +.+.. +
T Consensus 203 ~~g~i~~~~w~~~---~~d-~P~~h~~is~~El~~I~---~~k~~--------------------~-------------- 241 (466)
T KOG2532|consen 203 IVGLIWFILWFLF---YSD-SPSKHPNISEKELKYIE---KGKSE--------------------A-------------- 241 (466)
T ss_pred HHHHHHHHHHHHH---hcC-CcccCCCCCHHHHHHHH---hcccc--------------------c--------------
Confidence 8887777665432 333 35545432211 0000 00000 0
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHH-------HHHHHHhchhhHHHHHHHhcCCCCCCccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAI-------VYYVALVQQQTYVVFQALQSDRRVGNTHF 264 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~-------~~~~~~~q~~t~~~~q~~~~~~~~g~~g~ 264 (484)
........|| |++++=.|+|...+ .++....++++ |..+..++|..
T Consensus 242 ---------~~~~~~~vP~-----------~~i~ts~~vwai~~~~f~~~~~~~~l~~y~Pt-Y~~~VL~f~v~------ 294 (466)
T KOG2532|consen 242 ---------HVKKKPPVPY-----------KAILTSPPVWAIWISAFGGNWGFYLLLTYLPT-YLKEVLGFDVR------ 294 (466)
T ss_pred ---------ccCCCCCCCH-----------HHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHhCCChh------
Confidence 0000011244 33333334333322 22222223333 33333444422
Q ss_pred cccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513 265 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMA--IGMILAIFTMIISGIIEDKRRSLALSRPVGL 342 (484)
Q Consensus 265 ~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~--iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 342 (484)
..+++.+++.+...+...+.+.+.+.+.+| ..+.+..+|+. +++...+++++++++...
T Consensus 295 --~~G~~salP~l~~~~~k~~~g~lsD~l~~~----~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------------- 355 (466)
T KOG2532|consen 295 --ETGFLSALPFLAMAIVKFVAGQLSDRLTFR----ILSETTVRKIFNTIAFGGPAVFLLVLAFTSD------------- 355 (466)
T ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHHHhhc----cCchHhHHHHHHhHHHHHHHHHHHeeeecCC-------------
Confidence 356777788887777777777765544433 11234455644 344444444544444321
Q ss_pred cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc---cCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccC
Q 011513 343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ---FPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKG 419 (484)
Q Consensus 343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~---aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~ 419 (484)
-.. |. +.++++++..+..-...-+.... +|. ..+..+|+.+...++..+++|.+++.+.. .
T Consensus 356 ---------~~~-~~--a~~~l~~~~~~~g~~~~Gf~~~~~~~apq-~a~~l~g~~~~~~~~~~~~~P~~vg~~~~-~-- 419 (466)
T KOG2532|consen 356 ---------EHR-LL--AVILLTIAIGLSGFNISGFYKNHQDIAPQ-HAGFVMGIINFVGALAGFIAPLLVGIIVT-D-- 419 (466)
T ss_pred ---------Ccc-hH--HHHHHHHHHHHcccchhhhHhhhhhccch-HHHHHHHHHHHHHHHHHHHHHHheeeEeC-C--
Confidence 011 21 22344444443333333333333 554 55899999999999999999999988763 1
Q ss_pred CCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513 420 ASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCA 457 (484)
Q Consensus 420 ~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~ 457 (484)
++.++| ...|++.+++.++..++|.+++
T Consensus 420 ~t~~eW----------~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 420 NTREEW----------RIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred CCHHHH----------HHHHHHHHHHHHHhchheeEee
Confidence 122345 4688899999998888888775
No 34
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.19 E-value=4.1e-09 Score=106.92 Aligned_cols=88 Identities=13% Similarity=0.135 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++.+.+.+.+.+...|...++..|..+++ +| .+....++.+.+.++|..+|+.+++++.+++||++.|++.
T Consensus 86 ~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~ 161 (375)
T TIGR00899 86 NYFLLLVLGVLLSSFASTANPQLFALAREHADRT---GR-EAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTA 161 (375)
T ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhc---ch-hhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHH
Confidence 4556667777777777778888888888876532 11 1112356777889999999999999998889999999998
Q ss_pred hHHHHHHHHHHH
Q 011513 113 AFMMFLSCAMFF 124 (484)
Q Consensus 113 ~~~~~l~~i~~l 124 (484)
++..++..++.+
T Consensus 162 ~~~~~~~~~~~~ 173 (375)
T TIGR00899 162 ALAFVLCGVLVW 173 (375)
T ss_pred HHHHHHHHHHHH
Confidence 887776665543
No 35
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.19 E-value=2.6e-09 Score=112.41 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=67.9
Q ss_pred chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--------eec
Q 011513 31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--------QSD 102 (484)
Q Consensus 31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--------~~~ 102 (484)
......+++++++.++|.|+..|...++++|++++++ |..+.++.-.+..+|.++++.++..+ .++
T Consensus 117 ~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 190 (479)
T PRK10077 117 TGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNT 190 (479)
T ss_pred hhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccc
Confidence 3456678899999999999999999999999998632 34577788888999999987765433 245
Q ss_pred ccccccchhhhHHHHHHHHH
Q 011513 103 VSWAWGLGIPAFMMFLSCAM 122 (484)
Q Consensus 103 ~g~~~~F~i~~~~~~l~~i~ 122 (484)
+||++.|++.++..++..+.
T Consensus 191 ~gWr~~f~~~~~~~~~~~~~ 210 (479)
T PRK10077 191 DGWRYMFASEAIPALLFLML 210 (479)
T ss_pred CChHHHHHHHHHHHHHHHHH
Confidence 79999999887777665544
No 36
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.16 E-value=1e-08 Score=104.30 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.+...|...+++.|.+++++ +.+.+++.+...++|..+++.+++++.++.+|++.|.+.
T Consensus 92 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~ 165 (385)
T TIGR00710 92 NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFL 165 (385)
T ss_pred cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 46678889999999999999999999999998531 467899999999999999999999998889999999988
Q ss_pred hHHHHHHHHHHHh
Q 011513 113 AFMMFLSCAMFFL 125 (484)
Q Consensus 113 ~~~~~l~~i~~l~ 125 (484)
++..++..+..+.
T Consensus 166 ~~~~~~~~~~~~~ 178 (385)
T TIGR00710 166 SLAGILLSALIFF 178 (385)
T ss_pred HHHHHHHHHHHHH
Confidence 8777766655443
No 37
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.16 E-value=5.5e-09 Score=108.24 Aligned_cols=78 Identities=9% Similarity=0.139 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.++|.|...|...+++.|.+++++ |.++.+++..+.++|.++++.+.+++.+.+||++.|++
T Consensus 104 ~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i 177 (426)
T PRK12307 104 SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFV 177 (426)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHH
Confidence 356788999999999999999999999999998632 35678888999999999999999998888999999987
Q ss_pred hhHH
Q 011513 112 PAFM 115 (484)
Q Consensus 112 ~~~~ 115 (484)
..+.
T Consensus 178 ~~~~ 181 (426)
T PRK12307 178 GLLP 181 (426)
T ss_pred HHHH
Confidence 6543
No 38
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.15 E-value=1.9e-09 Score=108.74 Aligned_cols=86 Identities=15% Similarity=0.021 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.++|.|...+.......+.++++ |..+.+++..+.++|.++++.+.+.+.+.+||++.|++
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~ 161 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDK-------RGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIY 161 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcc-------cHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHH
Confidence 35677888999999999988888888888887631 25688888999999998876666666666899999998
Q ss_pred hhHHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMFF 124 (484)
Q Consensus 112 ~~~~~~l~~i~~l 124 (484)
.++..++..+..+
T Consensus 162 ~~~~~~~~~~~~~ 174 (377)
T TIGR00890 162 MGIIFLLVIVLGA 174 (377)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777665543
No 39
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.15 E-value=6.5e-09 Score=106.83 Aligned_cols=74 Identities=12% Similarity=0.156 Sum_probs=52.9
Q ss_pred cccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHH
Q 011513 47 GAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFF 124 (484)
Q Consensus 47 G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l 124 (484)
..+...|...++..|+.+++ +|+ .....++...+.++|.++||.+++++.+++||+..|++.++..++..+..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~ 191 (393)
T PRK15011 118 FGSTANPQMFALAREHADKT---GRE-AVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVW 191 (393)
T ss_pred HHHhhHHHHHHHHHHHhhhc---cch-HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 33456777778887766432 211 112235777899999999999999999889999999988876666655443
No 40
>TIGR00895 2A0115 benzoate transport.
Probab=99.14 E-value=9.8e-09 Score=104.50 Aligned_cols=85 Identities=11% Similarity=0.097 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.|...|...+++.|.+++++ +..+++++..+.++|..+++.+++++.++.||++.|.+.
T Consensus 104 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~ 177 (398)
T TIGR00895 104 NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVG 177 (398)
T ss_pred chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhh
Confidence 45678889999999999999999999999998532 356888999999999999999999998889999999988
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..++..++.
T Consensus 178 ~~~~~~~~~~~ 188 (398)
T TIGR00895 178 GIAPLLLLLLL 188 (398)
T ss_pred hhHHHHHHHHH
Confidence 65555554443
No 41
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.14 E-value=9.5e-09 Score=107.10 Aligned_cols=83 Identities=10% Similarity=0.066 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++.+++.+++.|...|...+.+.+++++++ +..++++++.+.++|..+++.+++++.+.+||++.|.+.
T Consensus 110 ~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~ 183 (434)
T PRK11663 110 SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIA 183 (434)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 45667777888899999888999999999998532 467889999999999999999999998889999999988
Q ss_pred hHHHHHHHH
Q 011513 113 AFMMFLSCA 121 (484)
Q Consensus 113 ~~~~~l~~i 121 (484)
++..++..+
T Consensus 184 ~i~~~~~~~ 192 (434)
T PRK11663 184 GIIAIVVGL 192 (434)
T ss_pred HHHHHHHHH
Confidence 776555443
No 42
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.13 E-value=6.5e-09 Score=105.08 Aligned_cols=86 Identities=12% Similarity=0.092 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc--------
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-------- 104 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-------- 104 (484)
+...++....+.+++.+...|...+++.|.+++++ |..+.++...+.++|.++++.+++++..+.|
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 44556666667788888899999999999997532 3568888899999999999999988887777
Q ss_pred ccccchhhhHHHHHHHHHHH
Q 011513 105 WAWGLGIPAFMMFLSCAMFF 124 (484)
Q Consensus 105 ~~~~F~i~~~~~~l~~i~~l 124 (484)
|+..|.+.++..+++.++.+
T Consensus 156 wr~~f~i~ai~~l~~~~~~~ 175 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTL 175 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 99999999887777665433
No 43
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.13 E-value=8.5e-09 Score=106.82 Aligned_cols=86 Identities=10% Similarity=-0.017 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++++.++|.+..-+...+...|.+++++ +.+.++++..+.++|..+||.+++++.++.||++.|.+
T Consensus 102 ~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~ 175 (413)
T PRK15403 102 TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAI 175 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 356788999999999998766666778888887532 35688899999999999999999999888899999999
Q ss_pred hhHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMF 123 (484)
Q Consensus 112 ~~~~~~l~~i~~ 123 (484)
.++..+++.+..
T Consensus 176 ~~~~~~i~~~~~ 187 (413)
T PRK15403 176 IAVMGLIAFVGL 187 (413)
T ss_pred HHHHHHHHHHHH
Confidence 888777766543
No 44
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.12 E-value=1.3e-08 Score=104.84 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++.+.+.+++.|...|...+++.|++++++ +..+..+.+.+.|+|.+++|.+++++.+.+||++.|++
T Consensus 106 ~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~ 179 (394)
T PRK10213 106 NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA 179 (394)
T ss_pred ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 457789999999999999999999999999997532 46788999999999999999999999998999999998
Q ss_pred hhHHHHHHH
Q 011513 112 PAFMMFLSC 120 (484)
Q Consensus 112 ~~~~~~l~~ 120 (484)
.++..++..
T Consensus 180 ~~~l~~~~~ 188 (394)
T PRK10213 180 AAVMGVLCI 188 (394)
T ss_pred HHHHHHHHH
Confidence 776555544
No 45
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.11 E-value=1.2e-08 Score=104.89 Aligned_cols=76 Identities=14% Similarity=0.206 Sum_probs=62.4
Q ss_pred HHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHH
Q 011513 38 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMF 117 (484)
Q Consensus 38 ~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~ 117 (484)
++.+.+.++|.|++.|...+++.|.+++++ +.++.++.....++|.++||.++|++.+. .|...|.+.+...+
T Consensus 92 ~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~ 164 (393)
T PRK11195 92 LLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL 164 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 567889999999999999999999998632 46788999999999999999999999874 57777776665544
Q ss_pred HHH
Q 011513 118 LSC 120 (484)
Q Consensus 118 l~~ 120 (484)
++.
T Consensus 165 ~~~ 167 (393)
T PRK11195 165 LAA 167 (393)
T ss_pred HHH
Confidence 443
No 46
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.11 E-value=2.3e-08 Score=101.67 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++.+.+.+++.+...+...+++.|.+++++ +.+++++.+.+.++|..+++.+++++.+..+|++.|.+.
T Consensus 78 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 45677888999999999999999999999987532 467899999999999999999999998888999999888
Q ss_pred hHHHHHHHHHHH
Q 011513 113 AFMMFLSCAMFF 124 (484)
Q Consensus 113 ~~~~~l~~i~~l 124 (484)
++..++..+...
T Consensus 152 ~~~~~~~~~~~~ 163 (377)
T PRK11102 152 ALAAILAAALVF 163 (377)
T ss_pred HHHHHHHHHHHH
Confidence 777766655443
No 47
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.10 E-value=1.6e-08 Score=103.99 Aligned_cols=81 Identities=14% Similarity=0.120 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-cccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-g~~~~F~i 111 (484)
+...+++++++.++|.|...+...+.+.|+++++ +..+.+++..+.+.|..+|+.+++++.++. +|+..|.+
T Consensus 96 ~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~ 168 (393)
T PRK09705 96 QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQR-------TPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAW 168 (393)
T ss_pred chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcccc-------chhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4567889999999999999999999999988631 246778888899999999999999888765 89888766
Q ss_pred hhHHHHHHH
Q 011513 112 PAFMMFLSC 120 (484)
Q Consensus 112 ~~~~~~l~~ 120 (484)
.++..++..
T Consensus 169 ~~~~~~~~~ 177 (393)
T PRK09705 169 WALPAVVAL 177 (393)
T ss_pred HHHHHHHHH
Confidence 554444333
No 48
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.10 E-value=4.8e-10 Score=113.00 Aligned_cols=88 Identities=19% Similarity=0.311 Sum_probs=78.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccch
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLG 110 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~ 110 (484)
...+.+.+.+.+.|+|.+.+-|..+++++|.|++++ |.+.|.+|||++++|+.+|.+.+.++.+.-+ |||+|.
T Consensus 119 ~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~ 192 (493)
T KOG1330|consen 119 NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFR 192 (493)
T ss_pred HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEE
Confidence 567889999999999999999999999999999742 5789999999999999999999999988766 999999
Q ss_pred hhhHHHHHHHHHHHh
Q 011513 111 IPAFMMFLSCAMFFL 125 (484)
Q Consensus 111 i~~~~~~l~~i~~l~ 125 (484)
..++.+++..++.++
T Consensus 193 ~~avl~vi~~~L~~~ 207 (493)
T KOG1330|consen 193 GSAVLGVIVGLLVFL 207 (493)
T ss_pred eehHHHHHHHHHHHh
Confidence 999999887776543
No 49
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.10 E-value=2e-08 Score=105.19 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=63.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHH-HHHhhhheeeeecccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~l~~~l~~~~g~~~~F~i 111 (484)
+...+++.+.+.+++.|...|...+...|++++++ +..+.++++.+.++|. +++++++..+....||++.|++
T Consensus 119 ~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i 192 (452)
T PRK11273 119 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYM 192 (452)
T ss_pred cHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHH
Confidence 45677888889999999999988889999987532 3568888899999986 4566554333333599999999
Q ss_pred hhHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMF 123 (484)
Q Consensus 112 ~~~~~~l~~i~~ 123 (484)
.++..++..++.
T Consensus 193 ~~~~~~~~~~l~ 204 (452)
T PRK11273 193 PAFAAILVALFA 204 (452)
T ss_pred HHHHHHHHHHHH
Confidence 887766654443
No 50
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.09 E-value=2e-08 Score=102.98 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.+++.+...+...+++.|.+++++ |.+++++.+...++|..++|.+++++.+..||++.|.+.
T Consensus 90 ~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~ 163 (392)
T PRK10473 90 TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTM 163 (392)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHH
Confidence 45567888899999999999989999999987532 467889999999999999999999888778999999988
Q ss_pred hHHHHHHHHHHH
Q 011513 113 AFMMFLSCAMFF 124 (484)
Q Consensus 113 ~~~~~l~~i~~l 124 (484)
++..++..++.+
T Consensus 164 ~~~~~i~~~~~~ 175 (392)
T PRK10473 164 AAMGILVLLLSL 175 (392)
T ss_pred HHHHHHHHHHHH
Confidence 877766665533
No 51
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.08 E-value=3.3e-08 Score=101.09 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 106 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~ 106 (484)
+...+++++++.++|.|...|...+...|..++++ +.+.+++++.+.++|..+|+.+++++.+...+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 160 (381)
T PRK03633 93 GFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSV 160 (381)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 56788899999999999998888877778776421 467899999999999999999999998754333
No 52
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.08 E-value=1.1e-08 Score=108.33 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.+++.|+..+...+++.|.+++++ +..++++++.+.++|.++++.+.+++.+++||++.|.+.
T Consensus 107 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~ 180 (496)
T PRK03893 107 GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 56778899999999999999999999999998531 456888999999999999999999998889999999875
Q ss_pred hHHH
Q 011513 113 AFMM 116 (484)
Q Consensus 113 ~~~~ 116 (484)
++..
T Consensus 181 ~~~~ 184 (496)
T PRK03893 181 ILPI 184 (496)
T ss_pred HHHH
Confidence 4433
No 53
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.07 E-value=2.3e-08 Score=102.30 Aligned_cols=85 Identities=14% Similarity=0.144 Sum_probs=70.2
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+.+.+++++.+.+++.|...|...++..|.+++++ +.++++++..+.++|..+++.+++++.+..||++.|.+
T Consensus 89 ~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~ 162 (382)
T PRK10091 89 SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLL 162 (382)
T ss_pred CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHH
Confidence 356788999999999999988888888888876521 34678888899999999999999999888999999999
Q ss_pred hhHHHHHHHHH
Q 011513 112 PAFMMFLSCAM 122 (484)
Q Consensus 112 ~~~~~~l~~i~ 122 (484)
.++..++..+.
T Consensus 163 ~~~~~~~~~~~ 173 (382)
T PRK10091 163 IAVFNIAVLAS 173 (382)
T ss_pred HHHHHHHHHHH
Confidence 88766665543
No 54
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.06 E-value=2.4e-08 Score=101.79 Aligned_cols=84 Identities=11% Similarity=0.050 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++++.++|.|.. ++..+..+++++++ + |.++.++...+.++|.++++++++++.+++||++.|.+.
T Consensus 78 ~~~~l~~~R~l~G~g~~~~-~~~~~~~~~~~~~~---~---r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPFL-LNAFAPAASQIREE---R---RDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred cHHHHHHHHHHHHhHhHHH-HHHHHHHHHHcCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 5778999999999999974 55556668888752 2 467899999999999999999999999889999999886
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++.-++..++.
T Consensus 151 ~~l~~~~~~~~ 161 (368)
T TIGR00903 151 AAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 55
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.04 E-value=1.6e-08 Score=105.04 Aligned_cols=267 Identities=12% Similarity=0.119 Sum_probs=149.7
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-------ecccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-------SDVSW 105 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-------~~~g~ 105 (484)
+...+++...+.+++.+.+.+...++..+..++. +| |.+..++...+.++|.+++..+.+.+. +..+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~--~~---R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~ 172 (437)
T TIGR00792 98 KLVYAYITYILLGLFYSFVNIPYWSLVPAITLDP--RE---RESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGW 172 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhhCcccccCCH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccH
Confidence 3455566667778888888888888888887542 22 456788888888998877765543332 34689
Q ss_pred cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513 106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 185 (484)
Q Consensus 106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (484)
++.|.+.++..++..++.+...++. ++..+.. + . + + .
T Consensus 173 ~~~~~i~~~l~~~~~~~~~~~~~e~----~~~~~~~-----------~-~---~--~----------------------~ 209 (437)
T TIGR00792 173 FMFALVLALIGVVSLIICFFGTKER----YSEIPKN-----------I-E---K--K----------------------L 209 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEec----CCCCCcc-----------c-c---c--C----------------------C
Confidence 9888888777766665443322211 1000000 0 0 0 0 0
Q ss_pred cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCc
Q 011513 186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 262 (484)
Q Consensus 186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~ 262 (484)
+. .+..|.++ .+..+.+.....+..+....+...+.. +...+
T Consensus 210 ~~------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-- 254 (437)
T TIGR00792 210 SL------------------------------KQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYF---TYVLG-- 254 (437)
T ss_pred CH------------------------------HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeE---eeecC--
Confidence 00 00111111 111222222223332221111111100 00111
Q ss_pred cccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513 263 HFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 342 (484)
Q Consensus 263 g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 342 (484)
..-..+++..+..+..++..|+..++ .+|++ ..+-+.+|.++.+++++...+..
T Consensus 255 -~~~~~~~~~~~~~i~~ii~~~~~~~l----~~r~g-------~~~~~~~~~~~~~~~~~~~~~~~-------------- 308 (437)
T TIGR00792 255 -DPELFSYMGSIAIVAGLIGVLLFPRL----VKKFG-------RKILFAGGILLMVLGYLIFFFAG-------------- 308 (437)
T ss_pred -ChHHHHHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 00012344455556666667766654 34432 22346677777777766654421
Q ss_pred cccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 343 EQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 343 ~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++.+...++.+++.....+...+++.+.+| ++.+|.++|++++...+|..+++.+.+.+.+
T Consensus 309 ---------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~ 379 (437)
T TIGR00792 309 ---------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG 379 (437)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344556678889998888888999888776 5678999999999999999999999888765
Q ss_pred cc
Q 011513 416 FT 417 (484)
Q Consensus 416 ~~ 417 (484)
..
T Consensus 380 ~~ 381 (437)
T TIGR00792 380 II 381 (437)
T ss_pred Hc
Confidence 44
No 56
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.04 E-value=8.6e-09 Score=106.82 Aligned_cols=137 Identities=11% Similarity=0.065 Sum_probs=93.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.+.+++.+..++..++.+++ .+|+. ..+.+.++.++.++++...++.
T Consensus 265 g~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~~~~~~~l~~~~~~l~~~~--------------------- 312 (420)
T PRK09528 265 GYLNSFQVFLEALIMFFAPFI----INRIG-------AKNALLLAGTIMAVRIIGSGFA--------------------- 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cchhhHHHHHHHHHHHHHHHhc---------------------
Confidence 455666666666777766664 34432 2233666777777766665543
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
.++++++...++.+++.....+...+++.+..|++.++...+. +++..++|..+++.+.+.+.+.. +
T Consensus 313 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G--- 380 (420)
T PRK09528 313 ---TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------G--- 380 (420)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------C---
Confidence 2345666777888888888888888999999999999987665 66778899999999988876432 1
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
+...|...+++.++..++..+.
T Consensus 381 -------~~~~f~~~~~~~~i~~~~~~~~ 402 (420)
T PRK09528 381 -------FQGTYLILGGIVLLFTLISVFT 402 (420)
T ss_pred -------chHHHHHHHHHHHHHHHHHHHH
Confidence 2346666677666655544443
No 57
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.04 E-value=7e-08 Score=102.25 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee----e----eccccc
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV----Q----SDVSWA 106 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l----~----~~~g~~ 106 (484)
..+.+++++.|+|.|+..|+..++++|.+|+++ |..+..+...+.++|.++|+.+...+ . .++||+
T Consensus 119 ~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR 192 (490)
T PRK10642 119 ILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWR 192 (490)
T ss_pred HHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHH
Confidence 358899999999999999999999999998632 23466677777888888777554332 1 258999
Q ss_pred ccchhhhHHHH
Q 011513 107 WGLGIPAFMMF 117 (484)
Q Consensus 107 ~~F~i~~~~~~ 117 (484)
+.|++.++..+
T Consensus 193 ~~f~i~~~~~l 203 (490)
T PRK10642 193 IPFFIALPLGI 203 (490)
T ss_pred HHHHHHHHHHH
Confidence 99998665444
No 58
>PRK03699 putative transporter; Provisional
Probab=99.03 E-value=5.2e-08 Score=100.11 Aligned_cols=84 Identities=13% Similarity=0.163 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-ecccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-~~~g~~~~F~i 111 (484)
+...+++++.+.+++.|...+...+.+.+.++++ + +....+..+...++|+.++|.+.+++. ++.||++.|.+
T Consensus 94 ~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~---~---r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 94 SLALFSIAMFVLGVVSGITMSIGTFLITHVYEGK---Q---RGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred hHHHHHHHHHHHHHhhHhhccchhHHhhhhcccc---h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 4667888999999999999999999999999652 1 345667777888999999999887764 45799999998
Q ss_pred hhHHHHHHHHH
Q 011513 112 PAFMMFLSCAM 122 (484)
Q Consensus 112 ~~~~~~l~~i~ 122 (484)
.++..++..++
T Consensus 168 ~~~~~~~~~~~ 178 (394)
T PRK03699 168 IGLVYVAIFIL 178 (394)
T ss_pred HHHHHHHHHHH
Confidence 77766655543
No 59
>PRK11043 putative transporter; Provisional
Probab=99.03 E-value=7.3e-08 Score=99.10 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.++|.+...+...+++.|.+++++ +.+.++......++|..++|.+++++.+++||++.|.+.
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~ 166 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATL 166 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 45677888899999988888888899999987531 356778888889999999999999999889999999988
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..++..+..
T Consensus 167 ~~~~~~~~~~~ 177 (401)
T PRK11043 167 FAITLLLILPT 177 (401)
T ss_pred HHHHHHHHHHH
Confidence 77766665443
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.03 E-value=4.6e-08 Score=100.32 Aligned_cols=84 Identities=7% Similarity=0.012 Sum_probs=67.3
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++.+.+++.|...+...++..|.+++++ +..+.++...+..+|.+++|.+++++.++.||++.|.+.
T Consensus 95 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~ 168 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFL 168 (394)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 45678888999999999888888888888876421 356777788899999999999999998888999999987
Q ss_pred hHHHHHHHHH
Q 011513 113 AFMMFLSCAM 122 (484)
Q Consensus 113 ~~~~~l~~i~ 122 (484)
++..++..+.
T Consensus 169 ~~~~~~~~~~ 178 (394)
T PRK11652 169 LLLGAGVTFS 178 (394)
T ss_pred HHHHHHHHHH
Confidence 7665554443
No 61
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.03 E-value=2.7e-08 Score=104.68 Aligned_cols=86 Identities=8% Similarity=0.016 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc---ccccc
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV---SWAWG 108 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~---g~~~~ 108 (484)
.+...+++.+.+.++|.|..-|...+.++|++++++ +..+++++..+.++|.++++.+..++.+.. +|+..
T Consensus 120 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~ 193 (467)
T PRK09556 120 VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGM 193 (467)
T ss_pred chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhH
Confidence 457788899999999999999999999999998642 245777788999999999998887665532 58888
Q ss_pred chhhhHHHHHHHHHH
Q 011513 109 LGIPAFMMFLSCAMF 123 (484)
Q Consensus 109 F~i~~~~~~l~~i~~ 123 (484)
|.+.++..++..++.
T Consensus 194 f~~~g~~~~~~~i~~ 208 (467)
T PRK09556 194 FIFPSIIALIIGFIG 208 (467)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888776666554443
No 62
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.02 E-value=7.9e-08 Score=100.10 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------eccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVS 104 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g 104 (484)
....+.+.+++.++|.|+..|...++++|.+|+++ |..+.++.+.+.+.|.++++.+...+. ..+|
T Consensus 123 ~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g 196 (432)
T PRK10406 123 APALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWG 196 (432)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccc
Confidence 34578899999999999999999999999998632 245777888899999998887655443 2589
Q ss_pred ccccchhhhHHHHHH
Q 011513 105 WAWGLGIPAFMMFLS 119 (484)
Q Consensus 105 ~~~~F~i~~~~~~l~ 119 (484)
|++.|++.++..++.
T Consensus 197 Wr~~F~i~~~~~ll~ 211 (432)
T PRK10406 197 WRIPFALGAVLAVVA 211 (432)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999998876655443
No 63
>TIGR00898 2A0119 cation transport protein.
Probab=99.02 E-value=5.8e-08 Score=103.05 Aligned_cols=82 Identities=13% Similarity=0.212 Sum_probs=66.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++++.++|.|+..|...+++.|.+++++ |..+..+...+..+|.++++.++.++.+ |++.|++.
T Consensus 179 ~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~ 249 (505)
T TIGR00898 179 NYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAV 249 (505)
T ss_pred cHHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH
Confidence 46678889999999999999999999999998632 3456777778889999999988777654 99999988
Q ss_pred hHHHHHHHHHH
Q 011513 113 AFMMFLSCAMF 123 (484)
Q Consensus 113 ~~~~~l~~i~~ 123 (484)
++..++..+..
T Consensus 250 ~i~~~~~~~~~ 260 (505)
T TIGR00898 250 SLPTFLFFLLS 260 (505)
T ss_pred HHHHHHHHHHH
Confidence 87776665544
No 64
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.02 E-value=4.1e-08 Score=114.60 Aligned_cols=268 Identities=11% Similarity=0.018 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------c-
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------V- 103 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--------~- 103 (484)
+...+++++++.+++.|.+.|...++++|.+++++ +..+++++..+.++|.++|+.+++++... .
T Consensus 102 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~ 175 (1146)
T PRK08633 102 WFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEIL 175 (1146)
T ss_pred cHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 36788899999999999999999999999998632 35789999999999999999999988764 2
Q ss_pred cccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCC
Q 011513 104 SWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 183 (484)
Q Consensus 104 g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (484)
+|.+.+.+..+...+..+++.+..+. .|..++... ++. .
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----------~~~------~--------------------- 214 (1146)
T PRK08633 176 GRIAPAGLVLLAVAVLGLIFAYRLPK----VPAAAPEVF----------DKK------K--------------------- 214 (1146)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcCcC----CCCCCcccc----------ccc------c---------------------
Confidence 23333333322222222222221111 111110000 000 0
Q ss_pred cccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHhchhhHHHHH-HHhcCCCC
Q 011513 184 QFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALVQQQTYVVFQ-ALQSDRRV 259 (484)
Q Consensus 184 ~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~q~~t~~~~q-~~~~~~~~ 259 (484)
+... ....+..+.++ .+..+.+...+++.......+.+... .......
T Consensus 215 ---~~~~------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s- 266 (1146)
T PRK08633 215 ---YLFP------------------------KLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLD- 266 (1146)
T ss_pred ---cccH------------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-
Confidence 0000 00000001000 01111122222222222111211111 1111111
Q ss_pred CCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513 260 GNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP 339 (484)
Q Consensus 260 g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g 339 (484)
-....+++.+...+..++..++.+++ .+|. ...+.+.+|.++.+++++...+.
T Consensus 267 ----~~~~~g~~~~~~~ig~~~g~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~------------ 319 (1146)
T PRK08633 267 ----NTFQVQYLLAASAIGIGIGSLLAGRL----SGRH-------IELGLVPLGALGLALSLFLLPTA------------ 319 (1146)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHH----hCCc-------eEccchhHHHHHHHHHHHHHHHh------------
Confidence 00012444555555556666655553 2332 22234556666666666555442
Q ss_pred CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.+++..+..+...+++.+.+|++.||.++|+.++...+|..+++.++..+.
T Consensus 320 ------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 320 ------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556667788899999988999999999999999999999999999999988777766553
No 65
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.00 E-value=1.4e-07 Score=97.32 Aligned_cols=84 Identities=14% Similarity=0.105 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i 111 (484)
+.+.+++...+.++..+...|...++..|.+++++ |.++..+..++.++|.++++.+.+++.+. .||+..|++
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i 166 (402)
T PRK11902 93 ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLL 166 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHH
Confidence 45566666667788899999999999999987532 35678888899999999999988888775 599999999
Q ss_pred hhHHHHHHHHH
Q 011513 112 PAFMMFLSCAM 122 (484)
Q Consensus 112 ~~~~~~l~~i~ 122 (484)
.++..++..+.
T Consensus 167 ~a~~~l~~~l~ 177 (402)
T PRK11902 167 MAGLMLAGALT 177 (402)
T ss_pred HHHHHHHHHHH
Confidence 88877665543
No 66
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.00 E-value=8.8e-08 Score=99.41 Aligned_cols=150 Identities=15% Similarity=0.136 Sum_probs=98.9
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+...+++.+..++...+.+++ .+|. +..+-+.++.++.++++........
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l----~dr~-------g~r~~l~~~~~~~~v~~~l~~~~~~------------------- 303 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFF----LKRF-------GIKKVMLLSLVAWALRFGFFAYGDP------------------- 303 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHh-------CcHHHHHHHHHHHHHHHHHHHHcCc-------------------
Confidence 344555555666666655554 3443 2334466777777777655544210
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
...+.+.++...++.++++.+..+....++.+.+|++.||.++|+.+ ...++|..+|+.+++.+.+..+..+.-+
T Consensus 304 -~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~--- 379 (418)
T TIGR00889 304 -EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD--- 379 (418)
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc---
Confidence 01123334456688999999999999999999999999999999997 5678999999999988765431000001
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
++..|...++++++..++++++.|.
T Consensus 380 -------~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 380 -------WQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456777777777777766666653
No 67
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.00 E-value=9.1e-08 Score=97.09 Aligned_cols=82 Identities=9% Similarity=0.132 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------ecccc
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSW 105 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g~ 105 (484)
...+++++.+.++|.|...|...+++.|.+++++ |.....+.+.+.++|.++++.+.+.+. +.++|
T Consensus 96 ~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w 169 (394)
T TIGR00883 96 PILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169 (394)
T ss_pred HHHHHHHHHHHHhhccccccccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccch
Confidence 3468888999999999999999999999987532 356888888999999999988765542 35789
Q ss_pred cccchhhhHHHHHHHH
Q 011513 106 AWGLGIPAFMMFLSCA 121 (484)
Q Consensus 106 ~~~F~i~~~~~~l~~i 121 (484)
++.|.+.++..+++..
T Consensus 170 ~~~~~~~~~~~~~~~~ 185 (394)
T TIGR00883 170 RIPFLVSAVLVLIGLY 185 (394)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999887766655543
No 68
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.98 E-value=1.2e-07 Score=95.81 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=78.9
Q ss_pred chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch
Q 011513 31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG 110 (484)
Q Consensus 31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~ 110 (484)
..+...+.+++++.++..|.+.+...+..+|..|+++ +.++..+.+.+..++-++|..++.++.+.+|||..|+
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~ 171 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFL 171 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHH
Confidence 4567899999999999999999999999999999753 3679999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHh
Q 011513 111 IPAFMMFLSCAMFFL 125 (484)
Q Consensus 111 i~~~~~~l~~i~~l~ 125 (484)
+-+..-++.++..+.
T Consensus 172 ~ia~l~ll~~~~~~~ 186 (394)
T COG2814 172 AIAVLALLALLLLWK 186 (394)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777766554
No 69
>PRK09952 shikimate transporter; Provisional
Probab=98.97 E-value=1.7e-07 Score=97.93 Aligned_cols=79 Identities=9% Similarity=0.139 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee--------ecccc
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ--------SDVSW 105 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~--------~~~g~ 105 (484)
...+.+.+.+.++|.|+..|...+++.|.+|++ + |....+....+.++|.+++..+..++. ..+||
T Consensus 125 ~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~---~---rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gW 198 (438)
T PRK09952 125 PVLLVTLRAIQGFAVGGEWGGAALLAVESAPKN---K---KAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGW 198 (438)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCC---C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccCh
Confidence 336888999999999999999999999998863 2 234566777888888888876655543 24799
Q ss_pred cccchhhhHHHHH
Q 011513 106 AWGLGIPAFMMFL 118 (484)
Q Consensus 106 ~~~F~i~~~~~~l 118 (484)
++.|++.++..++
T Consensus 199 r~~f~~~~~~~l~ 211 (438)
T PRK09952 199 RIPFLFSIVLVLI 211 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 9999987765433
No 70
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.97 E-value=1.2e-08 Score=107.42 Aligned_cols=83 Identities=11% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 115 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~ 115 (484)
...+.+.+.+++.+.......++..|+.+ ++++ ......++.|.+.++|.++|+.++|++.+.++|+..|++.++.
T Consensus 122 ~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l 197 (468)
T TIGR00788 122 VAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAAL 197 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 34447889999999999999999999998 3322 1345677999999999999999999999989999999998888
Q ss_pred HHHHHHH
Q 011513 116 MFLSCAM 122 (484)
Q Consensus 116 ~~l~~i~ 122 (484)
.++..+.
T Consensus 198 ~ll~~~~ 204 (468)
T TIGR00788 198 LLLQLFV 204 (468)
T ss_pred HHHHHHH
Confidence 8777443
No 71
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.94 E-value=3.7e-08 Score=99.43 Aligned_cols=86 Identities=14% Similarity=0.154 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHh-hhheeeeecccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISL-TVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~-~l~~~l~~~~g~~~~F~i 111 (484)
+...+++++.+.+++.|...|...+++.|.+++++ +.+++++...+.++|..+++ ++++.+.+..+|++.|.+
T Consensus 82 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 56788899999999999999999999999998632 34577888899999999999 566777777899999998
Q ss_pred hhHHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMFF 124 (484)
Q Consensus 112 ~~~~~~l~~i~~l 124 (484)
.++..++..++.+
T Consensus 156 ~~~~~~~~~~~~~ 168 (379)
T TIGR00881 156 PGIIAIIVSLICF 168 (379)
T ss_pred HHHHHHHHHHHHh
Confidence 8877766555444
No 72
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.93 E-value=3.8e-08 Score=98.54 Aligned_cols=86 Identities=9% Similarity=0.077 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh--eeeeecccccccch
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI--VYVQSDVSWAWGLG 110 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~--~~l~~~~g~~~~F~ 110 (484)
+...+.+-..+.+.-+|.--|.+...++.+|++++ |.+..++.-.+.|+|+.+.++++ +++..+++|+.+|+
T Consensus 116 s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~ 189 (448)
T COG2271 116 SLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFY 189 (448)
T ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHH
Confidence 67778888889999999999999999999999642 23455666699999999999999 99999899999999
Q ss_pred hhhHHHHHHHHHHH
Q 011513 111 IPAFMMFLSCAMFF 124 (484)
Q Consensus 111 i~~~~~~l~~i~~l 124 (484)
+++++-++..++.+
T Consensus 190 ~pgiiaiival~~~ 203 (448)
T COG2271 190 FPGIIAIIVALILL 203 (448)
T ss_pred HHHHHHHHHHHHHH
Confidence 99977666555443
No 73
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.93 E-value=1.2e-07 Score=98.92 Aligned_cols=86 Identities=14% Similarity=0.072 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhhee-eeecccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY-VQSDVSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~-l~~~~g~~~~F~i 111 (484)
+...+++.+.+.+++.|...|.....+.|.+++++ +..++++++.+.++|..+++.+.+. +..+.+|+.+|++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~ 190 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYF 190 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHH
Confidence 35567788889999999999999999999998632 3578889999999999999877665 4445799999999
Q ss_pred hhHHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMFF 124 (484)
Q Consensus 112 ~~~~~~l~~i~~l 124 (484)
.++..++..+..+
T Consensus 191 ~~~~~~i~~~~~~ 203 (438)
T TIGR00712 191 PAICAIIVALFAF 203 (438)
T ss_pred HHHHHHHHHHHHH
Confidence 8887777655443
No 74
>PRK09848 glucuronide transporter; Provisional
Probab=98.92 E-value=5e-08 Score=102.05 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=69.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC
Q 011513 305 TILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP 384 (484)
Q Consensus 305 s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP 384 (484)
+..+.+.+|+++.+++++...+.. ..+.++++...++.++|+.+..+...++..+.+|
T Consensus 292 g~~~~~~~g~~~~~i~~~~~~~~~----------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~ 349 (448)
T PRK09848 292 GKKNTFLIGALLGTCGYLLFFWVS----------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVE 349 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcC----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344557778888777776654321 1345555566788999999999999999999988
Q ss_pred ch-------hhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513 385 EN-------MRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417 (484)
Q Consensus 385 ~~-------~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~ 417 (484)
++ .+|.++|++.+...+|..+|+.+.+.+....
T Consensus 350 ~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~ 389 (448)
T PRK09848 350 YGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS 389 (448)
T ss_pred hhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 65 5699999999999999999999888765444
No 75
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.90 E-value=1.8e-07 Score=96.10 Aligned_cols=285 Identities=8% Similarity=-0.037 Sum_probs=154.1
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 115 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~ 115 (484)
.+.++.++.+++.+...|...++..|.-++ ....|++.....|+|.++|+.+++.+.+ ++|++.|.+.++.
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--------~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~ 171 (396)
T TIGR00882 101 GAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--------SNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGF 171 (396)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHhhhh--------cccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHH
Confidence 345556677888888888887776654221 1236677788899999999999999876 6999999988877
Q ss_pred HHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccccccC
Q 011513 116 MFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIMT 195 (484)
Q Consensus 116 ~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~ 195 (484)
.++..++.+... + ++|+++.. ++..+.+ .. .+ +..+..
T Consensus 172 ~~~~~~~~~~~~---~-~~~~~~~~------------~~~~~~~--~~----------------~~----~~~~~~---- 209 (396)
T TIGR00882 172 ALILMLLLMFAK---P-KAPSSATV------------ANALGAN--AS----------------AF----SLKLAL---- 209 (396)
T ss_pred HHHHHHHHHHhC---C-CCchhhhh------------hcccccc--cC----------------CC----CHHHHH----
Confidence 776654433211 1 11111000 0000000 00 00 000000
Q ss_pred CccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchh---hHHHHHHHhcCC-CCCCcccccccccc
Q 011513 196 PEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQ---TYVVFQALQSDR-RVGNTHFKIPAASY 271 (484)
Q Consensus 196 ~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~---t~~~~q~~~~~~-~~g~~g~~i~~~~~ 271 (484)
+..++ |.+..++.. .......+.+.. ..+. ....+. ..+ .+ ..+..
T Consensus 210 --------------------~~l~~-~~~~~~~l~---~~~~~~~~~~~~~~~~~y~--~~~~~~~~~~---~~-~~g~~ 259 (396)
T TIGR00882 210 --------------------ELFRQ-RKFWMFVLY---VVGVACVYDVFDQQFANFF--TSFFATPQQG---TR-VFGYV 259 (396)
T ss_pred --------------------HHHcC-CcHHHHHHH---HHHHHHHHHHHHHHHHHHH--HHhccccccc---hH-HHHHH
Confidence 00001 111111221 222222222222 2222 122111 111 00 12344
Q ss_pred chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513 272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 351 (484)
Q Consensus 272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 351 (484)
.++..+..++..+...++ .+|.. ..+-+.+|.++.++++......
T Consensus 260 ~~~~~i~~~~~~~~~g~l----~~r~g-------~~~~l~~~~~l~~l~~~~~~~~------------------------ 304 (396)
T TIGR00882 260 TTMGELLNALIMFCAPLI----INRIG-------AKNALLIAGTIMSVRIIGSSFA------------------------ 304 (396)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhc-------cchhHHHHHHHHHHHHHHHHhc------------------------
Confidence 455555555555544443 33332 2233667777777766553331
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
.+.++++...++.+++.........++..+..|++.+++..+. +.....+|+.+++.+.+.+.+.. +
T Consensus 305 ~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~------G------ 372 (396)
T TIGR00882 305 TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI------G------ 372 (396)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc------c------
Confidence 2455666777888888877777777888888899998887665 56788999999999988876532 1
Q ss_pred cCchhHHHHHHHHHHHHHHHHH
Q 011513 431 NKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~ 452 (484)
+...|.+.+++.++..++
T Consensus 373 ----~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 373 ----FQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred ----cHHHHHHHHHHHHHHHHH
Confidence 345666666666555543
No 76
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.90 E-value=1.8e-07 Score=97.27 Aligned_cols=269 Identities=12% Similarity=0.119 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee----ec---ccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ----SD---VSW 105 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~----~~---~g~ 105 (484)
....+++...+..++...+.-+..+++.|..++.+ + |.+..++...+.++|.++...+.+.+. +. .+|
T Consensus 102 ~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~--~---R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~ 176 (428)
T PF13347_consen 102 KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPD--E---RTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGY 176 (428)
T ss_pred HHHHHHHHHHHHHHhhhhccCchhhcCccccccHh--h---hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHH
Confidence 44455777778899999999999999999988643 2 345677777778888865555554433 22 168
Q ss_pred cccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcc
Q 011513 106 AWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQF 185 (484)
Q Consensus 106 ~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (484)
++.+.+.+++.++..++..+..|+-.++.++..+ +.
T Consensus 177 ~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~---------------~~----------------------------- 212 (428)
T PF13347_consen 177 RWMALVLAIVGLVFFLITFFFVKERSVEVTEQEK---------------KI----------------------------- 212 (428)
T ss_pred HHHHHHHHHHHHHHhhhhhheeeecccccccccc---------------cc-----------------------------
Confidence 8777777777777666655544430000000000 00
Q ss_pred cccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-hcCCCCCCccc
Q 011513 186 RCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQAL-QSDRRVGNTHF 264 (484)
Q Consensus 186 ~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~-~~~~~~g~~g~ 264 (484)
++.+..+. . .++ |. +..+++.....+....-..+...+... .+... +
T Consensus 213 ~~~~~~~~---------------~--------~~n-r~---~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~---- 260 (428)
T PF13347_consen 213 SLRDSLRS---------------L--------FRN-RP---FRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-G---- 260 (428)
T ss_pred ccccchhh---------------h--------ccc-ch---HHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-h----
Confidence 00000000 0 000 11 122333333334433333332222221 12111 0
Q ss_pred cccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccc
Q 011513 265 KIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQ 344 (484)
Q Consensus 265 ~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 344 (484)
. .+.+..+..+..++..|+..++ .+|+++ .+-+.+|.++.+++++...+...
T Consensus 261 -~-~~~~~~~~~~~~~v~~~~~~~l----~~r~gk-------~~~~~~~~~~~~~~~~~~~~~~~--------------- 312 (428)
T PF13347_consen 261 -L-ISIFMLIFFVASIVGSPLWGRL----SKRFGK-------KKVYIIGLLLAALGFLLLFFLGP--------------- 312 (428)
T ss_pred -h-hHHHHHHHHHHHHHHHHHHHHH----HHHccc-------eeehhhhHHHHHHHHHHHHHHHh---------------
Confidence 1 2333344455556666665553 455433 23466788888888887766531
Q ss_pred cCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc-------hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513 345 RRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-------NMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417 (484)
Q Consensus 345 ~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~-------~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~ 417 (484)
.+.+++.+..++.+++-........++..+..+. +..|.++|++.+...+|..+++.+.+.+-...
T Consensus 313 -------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~ 385 (428)
T PF13347_consen 313 -------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV 385 (428)
T ss_pred -------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 3567778888999999999989999999998874 55799999999999999999999888776544
No 77
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.89 E-value=8.1e-08 Score=98.17 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc--ccccch
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS--WAWGLG 110 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g--~~~~F~ 110 (484)
+...+++++++.++|.|...|...+++.|.+++++ +..+.+++..+.++|..+++.+++.+.+..+ |++.|.
T Consensus 99 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~ 172 (405)
T TIGR00891 99 GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFF 172 (405)
T ss_pred cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHH
Confidence 46678889999999999999999999999998632 3568889999999999999999988877666 999998
Q ss_pred hhhHHHHHHH
Q 011513 111 IPAFMMFLSC 120 (484)
Q Consensus 111 i~~~~~~l~~ 120 (484)
+.++..++..
T Consensus 173 ~~~~~~~~~~ 182 (405)
T TIGR00891 173 ISILPIIFAL 182 (405)
T ss_pred HHHHHHHHHH
Confidence 7655544443
No 78
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=98.89 E-value=9.8e-07 Score=90.96 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHH-HHHhhhheeeeecccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAM-MISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~-~i~~~l~~~l~~~~g~~~~F~i 111 (484)
+...+++.+.+.++|.+..-+...+.+.+.+++++ +.++.+++..+.++|. ++++.+++++.+..||+..++.
T Consensus 104 ~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~ 177 (402)
T TIGR00897 104 NYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWS 177 (402)
T ss_pred cHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 45567778888899988887878888888877532 4678888899999996 6899999998888886655554
Q ss_pred hhH
Q 011513 112 PAF 114 (484)
Q Consensus 112 ~~~ 114 (484)
...
T Consensus 178 ~~~ 180 (402)
T TIGR00897 178 ALA 180 (402)
T ss_pred HHH
Confidence 433
No 79
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.88 E-value=4.8e-07 Score=94.67 Aligned_cols=333 Identities=7% Similarity=-0.001 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--eec---------
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--QSD--------- 102 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--~~~--------- 102 (484)
...+.+++.+.-++.....+...++++|..++++.+ .+.++.++.+..|+|+++|+.++++. .+.
T Consensus 114 i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~ 189 (477)
T TIGR01301 114 IIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEAC 189 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccc
Confidence 355666777777788888888999999999975311 24699999999999999999988764 111
Q ss_pred ----ccccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCC
Q 011513 103 ----VSWAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSK 178 (484)
Q Consensus 103 ----~g~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (484)
.+.+..|.+.++.++++.++-++..|++...++++.+ +.. +++..
T Consensus 190 ~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~-------------~~~-----------~~~~~------- 238 (477)
T TIGR01301 190 GVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFI-------------NSE-----------AAPPS------- 238 (477)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccch-------------hhh-----------ccccc-------
Confidence 1567899999998888887766544443210000000 000 00000
Q ss_pred CCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHH----HHhHhhHHHHHHHHHHHHHHhchhhHHHHHHH-
Q 011513 179 LPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEV----KVLIRVIPIWASAIVYYVALVQQQTYVVFQAL- 253 (484)
Q Consensus 179 ~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~----k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~- 253 (484)
++ +... .+ .+-.+.. |.+.+++..-.+.-+=|..+-+..|.++-+.-
T Consensus 239 -~~-~~~~----------------------~~----~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~ 290 (477)
T TIGR01301 239 -KH-GEEA----------------------FF----GELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVY 290 (477)
T ss_pred -cc-chhh----------------------hH----HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHc
Confidence 00 0000 00 0000111 12222222222222333333334444432220
Q ss_pred hcCCCCC---CccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH-HHHHHHHHHHHHHHHHHHHH
Q 011513 254 QSDRRVG---NTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR-MAIGMILAIFTMIISGIIED 329 (484)
Q Consensus 254 ~~~~~~g---~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k-i~iG~~l~~i~~~~~~~~~~ 329 (484)
+-+..-. +.|..+ ..+-..+|.+...+. ..++.++.++.+ ..++ ..++.++.++|++...++..
T Consensus 291 ~~~~~~~~~y~~gvr~-G~~~l~~~s~~~~i~----s~~l~~l~~~~g-------~~k~~~~~s~~~~~~~l~~~~~i~~ 358 (477)
T TIGR01301 291 GGSVNQGAKYDDGVRA-GAFGLMLNSVVLGIT----SIGMEKLCRGWG-------AGKRLWGIVNIILAICLAATVLVTY 358 (477)
T ss_pred CCCCcchhHHHHHHHH-HHHHHHHHHHHHHHH----HHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHHHHh
Confidence 0010000 001110 123334444443333 333322344432 1233 36888899999988877653
Q ss_pred HhhhhhccCCCcccccCCCCccch-HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc--hhhhhHHhhHHHHHHHHHHHH
Q 011513 330 KRRSLALSRPVGLEQRRGAISSLS-GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE--NMRSIGGSLAFVGFAISNYLN 406 (484)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~~~~~~s-~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~--~~~g~~~gl~~l~~~iG~~lg 406 (484)
...+....++. +.. -..+.. .+..+..+.+.|++-......=++++.+..|+ +..|.+||+.+.+..+.+.+.
T Consensus 359 ~~~~~~~~~~~---~~~-~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~ 434 (477)
T TIGR01301 359 VAKNSRYYDGD---GES-LPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIV 434 (477)
T ss_pred hhhcccccccc---ccc-cCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHH
Confidence 10000000000 000 001112 24556677888999988888889999999995 456999999999999999999
Q ss_pred HHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 407 GFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 407 ~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
.+..+.+....+ + +....+.+-++.++++.+.-.+.-+|
T Consensus 435 sl~~g~~~~~~g---------~-----~~~~~~~~~gv~~~~aa~~~~~~~~~ 473 (477)
T TIGR01301 435 SLGSGPWDQLFG---------G-----GNLPAFVVGAVAAFVSGLLALILLPR 473 (477)
T ss_pred HHHHHHHHHHcC---------C-----CCeeHHHHHHHHHHHHHHHHHHhCCC
Confidence 887777543321 0 11335555555666666555554444
No 80
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=98.87 E-value=5.9e-07 Score=98.89 Aligned_cols=85 Identities=14% Similarity=0.199 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee-----------
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------- 101 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~----------- 101 (484)
+...+++++++.++|.|+..|...+++++.++.+. |...+++...+..+|.++++.++.++..
T Consensus 254 s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~ 327 (742)
T TIGR01299 254 GYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSA 327 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccc
Confidence 46788999999999999999999999999998531 3567777778888888888876533322
Q ss_pred --cccccccchhhhHHHHHHHHHH
Q 011513 102 --DVSWAWGLGIPAFMMFLSCAMF 123 (484)
Q Consensus 102 --~~g~~~~F~i~~~~~~l~~i~~ 123 (484)
..+|++.|++.++..++.++.+
T Consensus 328 ~~~~gWR~l~~i~~lp~ll~ll~~ 351 (742)
T TIGR01299 328 YQFHSWRVFVIVCAFPCVFAIGAL 351 (742)
T ss_pred cccccHHHHHHHHHHHHHHHHHHH
Confidence 2468888888777666555443
No 81
>PRK15075 citrate-proton symporter; Provisional
Probab=98.87 E-value=5.5e-07 Score=93.82 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee--------eecccccc
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV--------QSDVSWAW 107 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l--------~~~~g~~~ 107 (484)
.+.+++++.++|.|+.-|+..++++|.+|+++ |.++.+++..+.++|..+++.+++.+ .+++||++
T Consensus 119 ~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~ 192 (434)
T PRK15075 119 LVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRI 192 (434)
T ss_pred HHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHH
Confidence 57889999999999999999999999998642 24577777777777777776665554 24689999
Q ss_pred cchhhhH
Q 011513 108 GLGIPAF 114 (484)
Q Consensus 108 ~F~i~~~ 114 (484)
.|++..+
T Consensus 193 ~f~~~~~ 199 (434)
T PRK15075 193 PFLIGCL 199 (434)
T ss_pred HHHHHHH
Confidence 9987543
No 82
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.82 E-value=4.9e-07 Score=93.63 Aligned_cols=86 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee------ccccc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS------DVSWA 106 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~------~~g~~ 106 (484)
+...+++++.+.++|.|+..|...+++.+.+++++ |..+.+++..+.++|.++++.+++++.+ ..||+
T Consensus 95 ~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr 168 (412)
T TIGR02332 95 GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQ 168 (412)
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchh
Confidence 45678999999999999999999999999998531 3568888889999999999999888753 46999
Q ss_pred ccchhhhHHHHHHHHHHH
Q 011513 107 WGLGIPAFMMFLSCAMFF 124 (484)
Q Consensus 107 ~~F~i~~~~~~l~~i~~l 124 (484)
+.|.+.++..++..++.+
T Consensus 169 ~~f~~~~~~~l~~~~~~~ 186 (412)
T TIGR02332 169 WLFLLEGFPSVILGVMTW 186 (412)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999998777666554443
No 83
>PRK09669 putative symporter YagG; Provisional
Probab=98.80 E-value=2.9e-07 Score=96.26 Aligned_cols=65 Identities=8% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~ 418 (484)
.+.++...++.++|+....+...+++.+.+| ++..|.+.|.+.+...+|..+|+.+++.+.+..+
T Consensus 319 ~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 319 VWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444556688999999999999999999886 4456788999999999999999999888766553
No 84
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.80 E-value=5.7e-07 Score=95.62 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee------------
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ------------ 100 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~------------ 100 (484)
+...+++++++.++|.|+..|....++.+.+|++. |.++.++.+.+.++|.++++.++.++.
T Consensus 114 ~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 187 (502)
T TIGR00887 114 VMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAAD 187 (502)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 35789999999999999999999999999999642 356888889999999999887765431
Q ss_pred -----------ecccccccchhhhHHHHHHHH
Q 011513 101 -----------SDVSWAWGLGIPAFMMFLSCA 121 (484)
Q Consensus 101 -----------~~~g~~~~F~i~~~~~~l~~i 121 (484)
...+|++.|.+.++..++..+
T Consensus 188 ~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~ 219 (502)
T TIGR00887 188 EASCTGSCVPAVDYMWRILIGFGAVPALLALY 219 (502)
T ss_pred cccccccccchhcccHHHHHHHHHHHHHHHHH
Confidence 124799999877766555443
No 85
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.78 E-value=6.2e-07 Score=94.70 Aligned_cols=85 Identities=6% Similarity=-0.027 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee----e-----cc
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ----S-----DV 103 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~----~-----~~ 103 (484)
+...+++++++.++|.+..-+ ....+++.++++ + |..+.++.+...|+|+.+++.+.+.+. + ..
T Consensus 123 s~~~l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~---~---rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~ 195 (476)
T PLN00028 123 SATGFIAVRFFIGFSLATFVS-CQYWMSTMFNGK---I---VGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFT 195 (476)
T ss_pred CHHHHHHHHHHHHHHHHhhHH-HHHHHHHhcChh---h---eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 455677888899998887644 456788888753 1 346777777777888888766655432 1 25
Q ss_pred cccccchhhhHHHHHHHHHHH
Q 011513 104 SWAWGLGIPAFMMFLSCAMFF 124 (484)
Q Consensus 104 g~~~~F~i~~~~~~l~~i~~l 124 (484)
||++.|.+.++..++..+..+
T Consensus 196 gWr~~f~i~g~l~l~~~l~~~ 216 (476)
T PLN00028 196 AWRIAFFVPGLLHIIMGILVL 216 (476)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 899999998887766554433
No 86
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.78 E-value=6.2e-07 Score=90.59 Aligned_cols=80 Identities=18% Similarity=0.221 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc--cccccch
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV--SWAWGLG 110 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~--g~~~~F~ 110 (484)
+...+++++.+.++|.|...+...+...|.++++ +.++.+++..+.++|..+++.+++++.++. +|++.|.
T Consensus 86 ~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~ 158 (355)
T TIGR00896 86 GTALLFAGTALIGVGIAIINVLLPSLIKRDFPQR-------VGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALA 158 (355)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4557788899999999998888888888887531 356888889999999999999988887654 3888887
Q ss_pred hhhHHHHHH
Q 011513 111 IPAFMMFLS 119 (484)
Q Consensus 111 i~~~~~~l~ 119 (484)
+.++..++.
T Consensus 159 ~~~~~~~~~ 167 (355)
T TIGR00896 159 WWALPALLA 167 (355)
T ss_pred HHHHHHHHH
Confidence 766554443
No 87
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.76 E-value=3.7e-07 Score=96.34 Aligned_cols=118 Identities=13% Similarity=0.120 Sum_probs=76.4
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+..++.+..++..|+..++ .+|++ ..+.+.+|+++.+++.+...+.-.. .
T Consensus 271 ~~~~~~i~~ii~~~~~~~l----~~r~g-------kk~~~~~~~~~~~~~~~~~~~~~~~-------------------~ 320 (473)
T PRK10429 271 YLSYAGAANLVTLILFPRL----VKSLS-------RRILWAGASIFPVLSCGVLLLMGLA-------------------A 320 (473)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHcC-------cHHHHHHHHHHHHHHHHHHHHHhcc-------------------C
Confidence 3444555566666665553 34432 2344556666655555444332100 0
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-------chhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-------ENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-------~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~ 418 (484)
+.+.++++...++.+++.....+...++..+.+| ++..|.+.|.+.+..-+|..+|+.+.+.+.+..+
T Consensus 321 ~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 321 PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1234445556678899999999999999999988 4556779999999999999999988887765443
No 88
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.74 E-value=2.3e-06 Score=87.74 Aligned_cols=80 Identities=8% Similarity=-0.060 Sum_probs=54.2
Q ss_pred HHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHH
Q 011513 39 TGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFL 118 (484)
Q Consensus 39 ~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l 118 (484)
....+.++..+...+...++..+..++ +.+..+-....++..+|.++|+.+.+++.+++||+..|++.++..++
T Consensus 102 ~~~~~~~~~~a~~d~~~d~~~~~~~~~------~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~ 175 (390)
T TIGR02718 102 GLLACASLASATQDIATDGMAAEHFNG------RTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLA 175 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 334444555566666666665554432 11233455566777999999998888998889999999999888777
Q ss_pred HHHHHH
Q 011513 119 SCAMFF 124 (484)
Q Consensus 119 ~~i~~l 124 (484)
..+..+
T Consensus 176 ~~~~~~ 181 (390)
T TIGR02718 176 SLVCVL 181 (390)
T ss_pred HHHHHH
Confidence 665543
No 89
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.69 E-value=3e-06 Score=84.35 Aligned_cols=87 Identities=7% Similarity=-0.117 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------
Q 011513 31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-------- 102 (484)
Q Consensus 31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-------- 102 (484)
..+...+.+++++++.|.+...+..++++++.-++++ +.+..++.-.+..+|+++||++++.+..+
T Consensus 7 ~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~ 80 (310)
T TIGR01272 7 QRYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQ 80 (310)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhh
Confidence 3568899999999999999999999999999987532 35678888899999999999999876521
Q ss_pred --------ccccccchhhhHHHHHHHHHH
Q 011513 103 --------VSWAWGLGIPAFMMFLSCAMF 123 (484)
Q Consensus 103 --------~g~~~~F~i~~~~~~l~~i~~ 123 (484)
.+|++.|++-+...++..+++
T Consensus 81 ~~~~~~~~~~~~~~yl~ia~~~~~~~i~~ 109 (310)
T TIGR01272 81 VATANAEAAKVHTPYLLLAGALAVLAIIF 109 (310)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899985555544444433
No 90
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.55 E-value=3.6e-05 Score=77.62 Aligned_cols=276 Identities=14% Similarity=0.157 Sum_probs=157.1
Q ss_pred CCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccc
Q 011513 27 PGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWA 106 (484)
Q Consensus 27 ~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~ 106 (484)
..+.........++..++++|.+.......++.+|..++++ |.+.-++.|...-+|..++.++.+.+-+.++..
T Consensus 82 ~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 82 SGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred ccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 34455566677778888899999999999999999998743 356888889999999999999988777766643
Q ss_pred ccch----hhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCC
Q 011513 107 WGLG----IPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHT 182 (484)
Q Consensus 107 ~~F~----i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (484)
-..- .+.+.+++.++-.+ + . +++.+.. . +.++++
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~w-g--~----E~r~~~~--------------~-~~~~~~-------------------- 193 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALW-G--Q----EPRRSRR--------------A-AAAERP-------------------- 193 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-h--c----ccCCccc--------------c-cCCCCC--------------------
Confidence 2222 22222222221111 1 1 1110000 0 000000
Q ss_pred CcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCc
Q 011513 183 GQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNT 262 (484)
Q Consensus 183 ~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~ 262 (484)
...+.+. |+... ...+.++++ .-+++..+. +..|+.-++...| .
T Consensus 194 -~~~f~~a-------------------~~~~~--~~~~a~~f~--~fl~l~t~a-----------~~~QD~iLEPygg-~ 237 (403)
T PF03209_consen 194 -RPPFREA-------------------WRQVW--ASPQARRFF--VFLFLGTLA-----------FFMQDVILEPYGG-E 237 (403)
T ss_pred -CccHHHH-------------------HHHHH--hCCChhHHH--HHHHHHHHH-----------HHhhHHHcCCchh-H
Confidence 0000000 00000 001112221 111111221 2234433443322 1
Q ss_pred cccccccc---cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 011513 263 HFKIPAAS---YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRP 339 (484)
Q Consensus 263 g~~i~~~~---~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g 339 (484)
-|.++++. ++.+-....++...+.++... ++ ..+.+--.+|....++++....+...
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~---~~-------~~~~~~a~~G~~~~~~~f~lii~a~~---------- 297 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS---RR-------LGKKRTAALGCLLGALAFALIILAGP---------- 297 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC-------CCchHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 12244433 333333445555555555421 22 12222334677777777766554422
Q ss_pred CcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513 340 VGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFT 417 (484)
Q Consensus 340 ~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~ 417 (484)
.-+.+.+.+..+++|+|-.+.....++...+.++++..|+.+|+|...++++.-++..+++.+.|..
T Consensus 298 -----------~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 298 -----------LGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred -----------cccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1235566788899999999999999999999999999999999999999999999888888877654
No 91
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.3e-06 Score=84.11 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+.+.+++++.+.++|.++...+-.++++|.|+++.. |.++..+---.+.+|.++||..+|.+.+-.|+++.|++.
T Consensus 158 sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 158 SYPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 566899999999999999999999999999998642 367888888999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh
Q 011513 113 AFMMFLSCAMFFL 125 (484)
Q Consensus 113 ~~~~~l~~i~~l~ 125 (484)
++++++...+-++
T Consensus 233 ~~v~Lld~~L~l~ 245 (464)
T KOG3764|consen 233 AIVLLLDGALQLL 245 (464)
T ss_pred HHHHHHHHHHHHh
Confidence 9999988776544
No 92
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.51 E-value=1.8e-05 Score=86.47 Aligned_cols=87 Identities=16% Similarity=0.172 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc---------
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV--------- 103 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~--------- 103 (484)
....+++++++.|+|.+...|...+++.|.+++++ +..++++++.+.++|.++|+++++++.+.+
T Consensus 171 ~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~ 244 (633)
T TIGR00805 171 MWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTE 244 (633)
T ss_pred eehhhHHHHHHHhccCCcchhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCC
Confidence 46678899999999999999999999999998642 357899999999999999999998876533
Q ss_pred -------------cccccchhhhHHHHHHHHHHHh
Q 011513 104 -------------SWAWGLGIPAFMMFLSCAMFFL 125 (484)
Q Consensus 104 -------------g~~~~F~i~~~~~~l~~i~~l~ 125 (484)
+|+.+|++.++..++..+.+++
T Consensus 245 ~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~ 279 (633)
T TIGR00805 245 DVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF 279 (633)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2788899888877776655443
No 93
>PRK10133 L-fucose transporter; Provisional
Probab=98.47 E-value=1.6e-05 Score=82.96 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheee
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYV 99 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l 99 (484)
.+...+++++++.++|.|...+..++++.|..+++ + +....+.+.....+|..+|+.+++.+
T Consensus 115 ~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~---~---~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES---S---GHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh---h---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999864432 1 12346666788888888888876543
No 94
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.46 E-value=3.7e-06 Score=91.45 Aligned_cols=254 Identities=7% Similarity=-0.106 Sum_probs=178.5
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-cccc--
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWG-- 108 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~-- 108 (484)
.+.....+++..++++.++.+++.+++.+++.++- +++++++.+++|||..+.+.+.+ +++..+..... +...
T Consensus 80 ~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf---~~~~~~~~~s~F~~fY~~iNiGS-lis~~i~~~l~~~~~~fg 155 (654)
T TIGR00926 80 GHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF---EERQLSLRSRFFSFFYFAINAGS-LISTIITPILRGDVGCFG 155 (654)
T ss_pred ccchHHHHHHHHHHHHHhhccccccCchhhhHhhc---CccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc
Confidence 34666778999999999999999999999999763 36667789999999999999865 55555544332 3322
Q ss_pred -----chhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCC
Q 011513 109 -----LGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTG 183 (484)
Q Consensus 109 -----F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (484)
++..++.+++.++.++.+...++..++.+.+...+.+++.......+.+
T Consensus 156 ~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~gs~l~~v~~vi~~a~~~~-------------------------- 209 (654)
T TIGR00926 156 CQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKGNIVSKVIKCIVTALRKR-------------------------- 209 (654)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHHHHHHHHHHHh--------------------------
Confidence 3367777777777788877777666665554444555544333221100
Q ss_pred cccccccccccCCccccccCCCCCCCcc--cCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCC
Q 011513 184 QFRCLDKAAIMTPEDQIKSDGSAINPWR--LSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGN 261 (484)
Q Consensus 184 ~~~~l~~a~i~~~~~~~~~~g~~~~~~~--~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~ 261 (484)
+... .......|- ......+++++...+++.++...+.+++.+.|.......|..++++..+
T Consensus 210 ---~~~~------------~~~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~- 273 (654)
T TIGR00926 210 ---FSTR------------SEHWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDG- 273 (654)
T ss_pred ---hccC------------CcccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcC-
Confidence 0000 000000111 1122234678888899999999999999999988888888888988754
Q ss_pred ccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011513 262 THFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLA 335 (484)
Q Consensus 262 ~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~ 335 (484)
.+...+...+.++.+-.++..++...+.+|+++++. +...+++++.-+.+.++++.+.+++++....+..
T Consensus 274 -~l~g~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~---~~~~~ls~l~k~~iG~~la~la~~va~~ve~~~~ 343 (654)
T TIGR00926 274 -DVGGFEIQPDQMQVVNPLLILIFVPIFDYIVYPAIA---KCGTRFTSLRKMAVGGLLAALSFFVAALVQLKVN 343 (654)
T ss_pred -ccCCEecCHHHHHHHHHHHHHHhHHHHHHhHHHHHH---hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334467899999999999999999899999862 3335678899999999999999999888665543
No 95
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.38 E-value=6.6e-07 Score=90.68 Aligned_cols=140 Identities=16% Similarity=0.220 Sum_probs=106.1
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.++.+-.+.-+++.|+.+.+ -.| .+...-|++|.++-+++.+..++...
T Consensus 71 Gll~~vf~v~~~i~sPl~gyL----adr-------yNR~~v~~vG~~iW~~Av~~~~fs~~------------------- 120 (493)
T KOG1330|consen 71 GLLQTVFIVVFMIASPLFGYL----ADR-------YNRKRVIAVGIFIWTLAVFASGFSNH------------------- 120 (493)
T ss_pred cchhHHHHHHHHHHHHHHHHH----Hhh-------cCcceEEeeHHHHHHHHHHHHHHHHH-------------------
Confidence 455666566667778887774 233 33445588899888888887766532
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.|.+++...+.|+||...+|...+++.+..|...||+++|++++...+|+.+|...++.+...+. .|
T Consensus 121 -----Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~-----~W--- 187 (493)
T KOG1330|consen 121 -----FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF-----WW--- 187 (493)
T ss_pred -----HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc-----ce---
Confidence 34455677999999999999999999999999999999999999999999999888877765542 24
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
.+-|.+.++++++.+++..++.+
T Consensus 188 -------r~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 188 -------RWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred -------EEEEEeehHHHHHHHHHHHhhcc
Confidence 34567788888877766555543
No 96
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.36 E-value=0.00016 Score=76.05 Aligned_cols=88 Identities=13% Similarity=0.130 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee------ecccc
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ------SDVSW 105 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~------~~~g~ 105 (484)
.+.+.+.+.++++|+.+++.-|+....++.+|.+++ +..-+.++|.+.++|..+|.++...++ ...||
T Consensus 132 ~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW 205 (495)
T KOG2533|consen 132 HSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW 205 (495)
T ss_pred hhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc
Confidence 467788899999999999999999999999998642 356788999999999999999987752 34899
Q ss_pred cccchhhhHHHHHHHHHHHh
Q 011513 106 AWGLGIPAFMMFLSCAMFFL 125 (484)
Q Consensus 106 ~~~F~i~~~~~~l~~i~~l~ 125 (484)
+|.|++.++++++..++.++
T Consensus 206 ~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 206 RWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred eeehhHHHHHHHHHHheEEE
Confidence 99999999988887765443
No 97
>PRK03545 putative arabinose transporter; Provisional
Probab=98.31 E-value=3.8e-05 Score=78.70 Aligned_cols=134 Identities=12% Similarity=0.078 Sum_probs=96.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+..++.+.+ .+|+ +..+-+.+++++.+++.+..++.
T Consensus 47 g~~~~~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~~~~~~--------------------- 94 (390)
T PRK03545 47 GLMLTIYAWVVALMSLPLMLL----TSNV-------ERRKLLIGLFVLFIASHVLSALA--------------------- 94 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HcCC-------ChHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 455566666666666666553 3443 33355777888888887776554
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.+++....++.|+++....|....++.+..|++.|+..+|++....++|..+++.+++.+.+.. +|
T Consensus 95 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~------gw--- 162 (390)
T PRK03545 95 ---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYL------GW--- 162 (390)
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh------cH---
Confidence 235566677789999999999999999999999999999999999999999999999987764321 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFF 453 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~ 453 (484)
...|++.++++++..+..
T Consensus 163 -------~~~f~~~~~~~~l~~~~~ 180 (390)
T PRK03545 163 -------RTTFLAIGGGALITLLLL 180 (390)
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 346666666665554433
No 98
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.26 E-value=3.5e-05 Score=76.98 Aligned_cols=133 Identities=17% Similarity=0.268 Sum_probs=99.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+..|+.+.+. +|+ +..+-+.+|.++.+++.+...+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~g~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~--------------------- 82 (352)
T PF07690_consen 35 GLLFSAFFLGSALFSPFAGYLS----DRF-------GRRRVLIIGLLLFALGSLLLAFA--------------------- 82 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHS--------HHHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHc-------CCeeeEeehhhhhhhHHHHhhhh---------------------
Confidence 5666777777788888877763 443 22344677888888874444432
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|+++....+....++.+..|++.|+..+|++....++|..+++.+++.+.+.. +|
T Consensus 83 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------~~--- 150 (352)
T PF07690_consen 83 ---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF------GW--- 150 (352)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC------HH---
T ss_pred ---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc------cc---
Confidence 123366778899999999999999999999999999999999999999999999999998875321 12
Q ss_pred CccCchhHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~ 452 (484)
...|++.+++.++..++
T Consensus 151 -------~~~~~~~~~~~~~~~il 167 (352)
T PF07690_consen 151 -------RWAFLISAILSLIAAIL 167 (352)
T ss_dssp -------CCHHHHHHHHHHHHHHH
T ss_pred -------ccccccccchhhhhhhh
Confidence 23567777777777664
No 99
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.25 E-value=5.1e-05 Score=76.87 Aligned_cols=139 Identities=19% Similarity=0.235 Sum_probs=110.6
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHH-HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQR-MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR 346 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~k-i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 346 (484)
.+++.+...+.+.+..|+...+ .+|+. .|| +...+.+.++|-+..++.
T Consensus 50 aG~lis~yAl~~ai~ap~l~~l----t~r~~--------Rr~lLl~~l~lFi~~n~l~alA------------------- 98 (394)
T COG2814 50 AGQLITAYALGVALGAPLLALL----TGRLE--------RRRLLLGLLALFIVSNLLSALA------------------- 98 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hcccc--------hHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 4688888899999999987774 33321 233 444556677777776664
Q ss_pred CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513 347 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 426 (484)
Q Consensus 347 ~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~ 426 (484)
-|.+.+....++.+++-....+...+.+.+++|++.|+..+|+.+....++..+|.-++.++.+.- +|
T Consensus 99 -----p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~------GW- 166 (394)
T COG2814 99 -----PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF------GW- 166 (394)
T ss_pred -----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh------hH-
Confidence 346678889999999999999999999999999999999999999999999999988888876543 46
Q ss_pred CcCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 427 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 427 ~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
..-|+.+++++++..+..+...+
T Consensus 167 ---------R~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 167 ---------RATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 45788888888888877777766
No 100
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.24 E-value=8.6e-05 Score=76.88 Aligned_cols=85 Identities=14% Similarity=0.051 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee----------
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---------- 101 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~---------- 101 (484)
.+...+.+++++.++|.|...+..++++.+..++++ +.+..++.....++|..+|+.+++.+..
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~ 165 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDV 165 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh
Confidence 356788999999999999999999999988876532 2456778888999999999998876632
Q ss_pred ----------------cccccccchhhhHHHHHHHHH
Q 011513 102 ----------------DVSWAWGLGIPAFMMFLSCAM 122 (484)
Q Consensus 102 ----------------~~g~~~~F~i~~~~~~l~~i~ 122 (484)
..+|++.|++.++..++..++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~ 202 (410)
T TIGR00885 166 LDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALL 202 (410)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 246999998777755554433
No 101
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.24 E-value=6.8e-05 Score=76.11 Aligned_cols=137 Identities=10% Similarity=0.124 Sum_probs=97.9
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+..++..++.+++ .+|++ ..+-+.+|.++.+++.+.....
T Consensus 43 g~~~~~~~~~~~~~~~~~g~l----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 90 (385)
T TIGR00710 43 QMTLTLYLLGFAAGQLLWGPL----SDRYG-------RRPVLLLGLFIFALSSLGLALS--------------------- 90 (385)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----HHhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 566667777777777777765 34432 2234667777777777665543
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.++++....+...+++.+..|++.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 91 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------~~--- 158 (385)
T TIGR00710 91 ---NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWL------SW--- 158 (385)
T ss_pred ---ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CH---
Confidence 234566677899999999999999999999999999999999999999999999999988765321 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|++.+++.++..+.....
T Consensus 159 -------~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 159 -------HAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHh
Confidence 345555566655555544433
No 102
>PRK11462 putative transporter; Provisional
Probab=98.23 E-value=0.00012 Score=76.99 Aligned_cols=86 Identities=15% Similarity=0.202 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-------cccc
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-------VSWA 106 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-------~g~~ 106 (484)
...+++...+..++..++.-...++.++..++. +| |.+..++...+.++|.++++.+...+... .+|.
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~--~e---Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~ 183 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDP--TQ---RISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQ 183 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHH
Confidence 334455555667777777778889999887753 23 46788888899999988876664332221 3566
Q ss_pred ccchhhhHHHHHHHHHHH
Q 011513 107 WGLGIPAFMMFLSCAMFF 124 (484)
Q Consensus 107 ~~F~i~~~~~~l~~i~~l 124 (484)
....+.++..++...+.+
T Consensus 184 ~~~~i~~ii~~i~~~i~~ 201 (460)
T PRK11462 184 GGIAVLSVVAFMMLAFCF 201 (460)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555444444433
No 103
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.22 E-value=9.5e-05 Score=76.56 Aligned_cols=142 Identities=13% Similarity=0.068 Sum_probs=99.1
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+.+++.+++ .+|++ ..+-+.+++++.+++.+..++.
T Consensus 46 g~~~s~~~~~~~~~~~~~g~l----~dr~G-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 93 (412)
T TIGR02332 46 GLAATLFYAAYVICGIPSNIM----LAIIG-------ARRWIAGIMVLWGIASTATMFA--------------------- 93 (412)
T ss_pred HHHHHHHHHHHHHHHhhHHHH----HHHhC-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 455566666667777776664 34543 2234667788888777776653
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.+++....++.|++|....|....++.+..|++.||..+|++....++|..+++.+++.+.+.....+..+|
T Consensus 94 ---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gw--- 167 (412)
T TIGR02332 94 ---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGW--- 167 (412)
T ss_pred ---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccch---
Confidence 23556777889999999999999999999999999999999999999999999999998776431100011234
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
...|.+.++.+++..++..+
T Consensus 168 -------r~~f~~~~~~~l~~~~~~~~ 187 (412)
T TIGR02332 168 -------QWLFLLEGFPSVILGVMTWF 187 (412)
T ss_pred -------hHHHHHHHHHHHHHHHHHhh
Confidence 35666666666555444433
No 104
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.20 E-value=1.7e-05 Score=80.05 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee----------c
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS----------D 102 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~----------~ 102 (484)
+...+++++.+.+++.+.+ +...++++|.+++++ |..+.+++..+.++|..+++.+++.+.. +
T Consensus 90 ~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~ 162 (366)
T TIGR00886 90 SYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKI------QGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAH 162 (366)
T ss_pred hHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhh------hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 5677888999999997765 556788999987532 3567788887888888888777655543 3
Q ss_pred ccccccc-hhhhHHHHHHH
Q 011513 103 VSWAWGL-GIPAFMMFLSC 120 (484)
Q Consensus 103 ~g~~~~F-~i~~~~~~l~~ 120 (484)
.+|++.| .+.++...+..
T Consensus 163 ~~w~~~~~~~~~~~~~~~~ 181 (366)
T TIGR00886 163 LAWGWAFVIVPAGILLLPA 181 (366)
T ss_pred ccccchhHHHHHHHHHHHH
Confidence 4899999 44444444333
No 105
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=98.19 E-value=0.00012 Score=75.20 Aligned_cols=112 Identities=13% Similarity=0.079 Sum_probs=84.1
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+++.+...+..++..++.+++ .+|+++ .+-+.++.++.+++.+...+.
T Consensus 52 ~g~~~~~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~-------------------- 100 (406)
T PRK11551 52 MGWAFSAGILGLLPGALLGGRL----ADRIGR-------KRILIVSVALFGLFSLATAQA-------------------- 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhCC-------chhHHHHHHHHHHHHHHHHHh--------------------
Confidence 3566677777777777877775 344432 233566666666665554432
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.|++.....+...+.+.+..|++.|+..+|+++....+|..+++.++....
T Consensus 101 ----~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~ 163 (406)
T PRK11551 101 ----WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163 (406)
T ss_pred ----ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 245566777899999999999999999999999999999999999999999999988876654
No 106
>TIGR00893 2A0114 d-galactonate transporter.
Probab=98.16 E-value=6e-05 Score=76.09 Aligned_cols=137 Identities=13% Similarity=0.108 Sum_probs=99.8
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+..++..|+.+++. +|+++| +-+.++.++.+++....++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~g~l~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 79 (399)
T TIGR00893 32 GYVFSAFSWGYVVGQFPGGWLL----DRFGAR-------KTLAVFIVIWGVFTGLQAFA--------------------- 79 (399)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HhcCcc-------eeeHHHHHHHHHHHHHHHHH---------------------
Confidence 5667777888888888877753 444321 22456666666666665543
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+.. +|
T Consensus 80 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~--- 147 (399)
T TIGR00893 80 ---GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHF------SW--- 147 (399)
T ss_pred ---cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhC------Cc---
Confidence 245567778899999999999999999999999999999999999999999999999988754321 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|...++++++..++..+.
T Consensus 148 -------~~~~~~~~~~~~~~~~~~~~~ 168 (399)
T TIGR00893 148 -------QWAFIIEGVLGIIWGVLWLKF 168 (399)
T ss_pred -------hHHHHHHHHHHHHHHHHhhhe
Confidence 345666666666655544443
No 107
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.16 E-value=0.00025 Score=75.30 Aligned_cols=113 Identities=11% Similarity=0.042 Sum_probs=87.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+|..+...+...++.|+.+++. +|++ ..+-+.+|.++.+++.+..+..
T Consensus 43 ~~~~~~~~~l~~~~~~~~~G~l~----D~~G-------rk~~l~~~~~~~~~~~~~~~~a-------------------- 91 (495)
T PRK14995 43 LLWIIDIYSLVMAGMVLPMGALG----DRIG-------FKRLLMLGGTLFGLASLAAAFS-------------------- 91 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------cHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 35667777777788888877763 3432 2344777888888877776653
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc-cCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ-FPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~-aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...+++|+|.....|.....+.+. .|++.|+..+|++....++|..+|+.+++.+.+
T Consensus 92 ----~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~ 156 (495)
T PRK14995 92 ----PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLE 156 (495)
T ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2456677788999999999999888877665 588999999999999999999999999988764
No 108
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.14 E-value=0.00011 Score=77.27 Aligned_cols=113 Identities=14% Similarity=0.097 Sum_probs=87.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+..++..|+.+++. +|++ ..+-+.+|.++.+++.+..+..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~-------------------- 87 (485)
T TIGR00711 39 VQWVITSYMLANAISIPLTGWLA----KRFG-------TRRLFLISTFAFTLGSLLCGVA-------------------- 87 (485)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHH----HHhC-------cHHHHHHHHHHHHHHHHHHhCc--------------------
Confidence 35677777788888888877753 4432 2234667777777766655432
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.|++.....+....++.+..|++.|+..+|++.....+|..+|+.+++.+.+
T Consensus 88 ----~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 151 (485)
T TIGR00711 88 ----PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIE 151 (485)
T ss_pred ----CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhcc
Confidence 2455677788999999999999999999999999999999999999999999999999887653
No 109
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.13 E-value=0.00045 Score=71.18 Aligned_cols=127 Identities=12% Similarity=0.135 Sum_probs=85.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
.+..+-+.+|++..++=+...+.... + ....+..+...-+++|+.-.+...++..++.+.+
T Consensus 270 ~g~~~ll~~a~~~~~vR~~l~a~~~~---------~----------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~ 330 (400)
T PF03825_consen 270 FGIKWLLLLALVAYAVRWLLYAYFSD---------P----------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIA 330 (400)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhcC---------C----------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC
Confidence 45556677777777766666655411 0 0111112223335799999999999999999999
Q ss_pred CchhhhhHHhhHHH-HHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 384 PENMRSIGGSLAFV-GFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 384 P~~~~g~~~gl~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
|++.|+..||++.. ..++|..+|..++|.+.+.-+..+ - -+...+|.+.+++.++..+++++..|+
T Consensus 331 p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~--~--------~~~~~~~~v~a~~~~~~~~~f~~~fk~ 397 (400)
T PF03825_consen 331 PPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARG--M--------FDWSAVFLVFAVMALVILVLFVILFKP 397 (400)
T ss_pred CccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchh--h--------hhHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999999999886 468999999999988875321100 0 012346777777777777777776443
No 110
>PRK11663 regulatory protein UhpC; Provisional
Probab=98.13 E-value=0.0002 Score=74.66 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=84.3
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+..|+.+++ .+|++ +.+-+.+++++.+++.+..++..
T Consensus 61 g~~~~~~~~~~~~~~~~~G~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~~-------------------- 109 (434)
T PRK11663 61 GLLATLFYITYGVSKFVSGIV----SDRSN-------ARYFMGIGLIATGIINILFGFSS-------------------- 109 (434)
T ss_pred HHHHHHHHHHHHHHHhhhhHH----HhhcC-------CchhHHHHHHHHHHHHHHHHHHh--------------------
Confidence 455666667777777777775 34432 22346778888777776655532
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+.+.++...++.++++....+.....+.+..|++.||..+|++....++|..+++.+.+.+.+
T Consensus 110 ----~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~ 172 (434)
T PRK11663 110 ----SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIAL 172 (434)
T ss_pred ----HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 244455566788999988889999999999999999999999999999999999998887653
No 111
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.10 E-value=0.00033 Score=72.03 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=87.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+..|+...+ .+|. ...+-+.+++++.+++.+...+.
T Consensus 58 g~~~~~~~~~~~~~~~~~g~l----~Dr~-------grr~~~~~~~~~~~~~~~~~~~~--------------------- 105 (394)
T PRK10213 58 GQSVTVTAFVAMFASLFITQT----IQAT-------DRRYVVILFAVLLTLSCLLVSFA--------------------- 105 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----hccc-------CcHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 445566777777778877765 3343 23344677888887777665443
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.|++.....|...+++.+..|++.|+..+|++....++|..+++.+++.+.+
T Consensus 106 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~ 169 (394)
T PRK10213 106 ---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGE 169 (394)
T ss_pred ---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777788999999999999999999999999999999999999999999999999988753
No 112
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.10 E-value=0.0015 Score=68.83 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=63.2
Q ss_pred HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHH
Q 011513 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYY 440 (484)
Q Consensus 361 ~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~ 440 (484)
-++.|+.-.-..+..=++..+++|++..+.+.|+|.++.-..+.+||++.+.+.+.++ +..+-+.
T Consensus 387 a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg---------------~~r~g~~ 451 (477)
T PF11700_consen 387 AVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATG---------------SQRYGFL 451 (477)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------------CchhHHH
Confidence 3567777777888889999999999999999999999999999999999999987663 1233455
Q ss_pred HHHHHHHHHHHHHHH
Q 011513 441 LVAALGLLNFGFFLL 455 (484)
Q Consensus 441 ~la~l~~~~~i~~~~ 455 (484)
.+.++.++.++++..
T Consensus 452 ~l~~lf~~gl~ll~~ 466 (477)
T PF11700_consen 452 FLLVLFLIGLILLFF 466 (477)
T ss_pred HHHHHHHHHHHHHhh
Confidence 566666666666544
No 113
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.08 E-value=0.00026 Score=72.39 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=98.1
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+.+.+..++..|+.+++ .+|+ ...+-+.+|.++.+++.+..++.
T Consensus 40 ~g~~~s~~~~~~~~~~~~~g~l----~dr~-------g~r~~~~~~~~~~~~~~~l~~~~-------------------- 88 (382)
T PRK10091 40 AGHMISYYALGVVVGAPIIALF----SSRY-------SLKHILLFLVALCVIGNAMFTLS-------------------- 88 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHH----HccC-------ccHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3566777888888888887775 3443 23344667888887777766553
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
.+.+++....++.|+++....+.....+.+..|++.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 89 ----~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~------gw-- 156 (382)
T PRK10091 89 ----SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF------SW-- 156 (382)
T ss_pred ----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc------cH--
Confidence 245667778899999999888888899999999999999999999999999999988887764321 23
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHH
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~ 452 (484)
...|++.+++.++..+.
T Consensus 157 --------r~~f~~~~~~~~~~~~~ 173 (382)
T PRK10091 157 --------RYTFLLIAVFNIAVLAS 173 (382)
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 34566666655554443
No 114
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.07 E-value=0.00029 Score=70.54 Aligned_cols=117 Identities=13% Similarity=0.069 Sum_probs=88.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+..++..|+.+++. +|++ ..+-+.++.++.+++.+...+....
T Consensus 37 g~~~~~~~~~~~i~~~~~G~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~~~~------------------ 87 (365)
T TIGR00900 37 SLAALAGMLPYVVLSPIAGALA----DRYD-------RKKVMIGADLIRAVLVAVLPFVALL------------------ 87 (365)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----Hhhc-------hhHHHHHHHHHHHHHHHHHHHHHHc------------------
Confidence 5667777778888888877753 4432 2233556666666666655554320
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
...+.+++....++.+++..+..|...+++.+..|++.|+..+|+......+|..+|+.+++.+.+
T Consensus 88 -~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~ 153 (365)
T TIGR00900 88 -GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYA 153 (365)
T ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 013566777788999999999999999999999999999999999999999999999999887653
No 115
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.07 E-value=0.00025 Score=73.16 Aligned_cols=110 Identities=13% Similarity=-0.024 Sum_probs=82.5
Q ss_pred ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
.......+..++..|+.+++ .+|++ ..+-+.+|.++.+++++.....
T Consensus 50 l~~~~~~l~~~~~~~~~G~l----~dr~g-------~k~~l~~~~~~~~~~~~~~~~~---------------------- 96 (400)
T PRK11646 50 IALGLRQFIQQGLGIFGGAI----ADRFG-------AKPMIVTGMLMRAAGFATMAIA---------------------- 96 (400)
T ss_pred HHHHHHHHHHHHHHhhhhHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHh----------------------
Confidence 33444444555556666665 34432 2233667888888877766543
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.|++....++.++++.+..|...+.+.+.+|++.|+..+|+.....++|..+|+.+++.+.
T Consensus 97 --~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~ 159 (400)
T PRK11646 97 --HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL 159 (400)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235667778899999999999999999999999999999999999999999999999998875
No 116
>PRK10054 putative transporter; Provisional
Probab=98.07 E-value=0.00023 Score=73.22 Aligned_cols=112 Identities=8% Similarity=0.047 Sum_probs=82.7
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..++..+..++..|+.+++. +|+++ .+-+.+|.++.+++++...+.+.
T Consensus 45 ~g~~~s~~~~~~~~~~~~~G~l~----Dr~g~-------k~~~~~~~~~~~~~~~~~~~~~~------------------ 95 (395)
T PRK10054 45 IGYAMTIALTIGVVFSLGFGILA----DKFDK-------KRYMLLAITAFASGFIAIPLVNN------------------ 95 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hhcCc-------chhHHHHHHHHHHHHHHHHHHhH------------------
Confidence 35666676777778888888863 44322 23456777777777776665432
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++..+.+.+.+.....+.....+.+..|++.|+..+|+.+...++|..+|+.+++.+.
T Consensus 96 ------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~ 156 (395)
T PRK10054 96 ------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLV 156 (395)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333445567777777778888999999999999999999999999999999999988875
No 117
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.06 E-value=4.4e-05 Score=76.87 Aligned_cols=138 Identities=12% Similarity=0.082 Sum_probs=96.6
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+..++.+++ .+|+++ .+-+.+|.++.+++.+..++..
T Consensus 33 g~~~~~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~~-------------------- 81 (379)
T TIGR00881 33 GLLLSSFSIAYGISKFVMGSV----SDRSNP-------RVFLPIGLILCAIVNLFFGFST-------------------- 81 (379)
T ss_pred HHHHHHHHHHHHhhhhhhhHH----HHhhCC-------eehhHHHHHHHHHHHHHHHHhh--------------------
Confidence 456667777777777777775 344322 2346677777777777765542
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHH-HHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNG-FLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~-~l~~~~~~~~~~~~~~~w~~ 427 (484)
+.++++...++.|++.....+...+++.+..|++.|+..+|++.....+|..+++ .+...+... .+|
T Consensus 82 ----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~-- 149 (379)
T TIGR00881 82 ----SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAEL------YSW-- 149 (379)
T ss_pred ----hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhc------CCc--
Confidence 3455667788999999999999999999999999999999999999999999998 455444321 123
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCA 457 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~ 457 (484)
...|++.++++++..++..+..
T Consensus 150 --------~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 150 --------HWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred --------hhHHHHHHHHHHHHHHHHheee
Confidence 2345666666666555444443
No 118
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.05 E-value=0.00019 Score=73.37 Aligned_cols=92 Identities=9% Similarity=-0.024 Sum_probs=67.3
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhH-HHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLA-FVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~-~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
.+++++++.-.+.++--.+......-+++++.|+++.++...+. .++.++|..+.+.+.+..++.-+
T Consensus 310 ~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G------------ 377 (412)
T PF01306_consen 310 TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG------------ 377 (412)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC------------
Confidence 45677777778888888899999999999999999998888775 57888999888888887765321
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 431 NKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
....|++++++.++..++=.+.-++
T Consensus 378 ----~~~tylimg~iv~~~~li~~f~l~~ 402 (412)
T PF01306_consen 378 ----FQHTYLIMGLIVLPFTLISAFTLKK 402 (412)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ----cHHHHHHHHHHHHHHHHHheeeecC
Confidence 2446777887777666655554443
No 119
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.05 E-value=0.00066 Score=67.31 Aligned_cols=85 Identities=18% Similarity=0.246 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecc-cccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDV-SWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~-g~~~~F~i 111 (484)
+...++.+..+++.|.+....-.++++-+-||++ .....+.|-.++++|+.+++.++..+.++. ||+.+...
T Consensus 98 ~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-------~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~ 170 (395)
T COG2807 98 GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-------VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGF 170 (395)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-------hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHH
Confidence 5678999999999999999999999999999863 246778888999999999999999988876 79988877
Q ss_pred hhHHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMFF 124 (484)
Q Consensus 112 ~~~~~~l~~i~~l 124 (484)
=++.-++++++.+
T Consensus 171 WAl~allAl~~Wl 183 (395)
T COG2807 171 WALLALLALLIWL 183 (395)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 120
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=1.6e-05 Score=79.25 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=115.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+++...-.++-++..|+++.++ .|. ....-|.+|++++..+-++.++.+.
T Consensus 108 iG~LFaskA~~qllvnp~~G~l~----~~i-------Gy~ipm~~Gl~vmf~sTilFafg~s------------------ 158 (464)
T KOG3764|consen 108 IGLLFASKALVQLLVNPFFGNLI----DRI-------GYKIPMVAGLFVMFLSTILFAFGNS------------------ 158 (464)
T ss_pred hhHHHHHHHHHHHHhcccchhhH----HHh-------ccccHHHHHHHHHHHHHHHHHHcch------------------
Confidence 35555556666677777776653 343 3334588999999999999888754
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh-hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM-RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 426 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~-~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~ 426 (484)
.+.++.+..++|+|..+.+..+++++++.-|++. ||..||.-.-+.++|..+|+.+++++++.-+
T Consensus 159 ------y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-------- 224 (464)
T KOG3764|consen 159 ------YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-------- 224 (464)
T ss_pred ------hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC--------
Confidence 3356788999999999999999999999999988 5999999999999999999999999987643
Q ss_pred CcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513 427 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 464 (484)
Q Consensus 427 ~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~ 464 (484)
.+.=|.++++++++..++-+++.+.++..+
T Consensus 225 --------k~aPFlVL~~v~Lld~~L~l~vi~p~~~~~ 254 (464)
T KOG3764|consen 225 --------KSAPFLVLAIVLLLDGALQLLVIEPTEMDP 254 (464)
T ss_pred --------CcCcHHHHHHHHHHHHHHHHheeCccccCc
Confidence 123578999999999988888777665544
No 121
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.04 E-value=0.00024 Score=72.42 Aligned_cols=113 Identities=14% Similarity=0.158 Sum_probs=86.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+++.++..+...+..|+.+.+. +|++ ..+-+.++.++.+++.+..++.
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~----Dr~g-------~r~~~~~~~~~~~~~~~~~~~~-------------------- 97 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWG----DRYG-------RRLPMVTSIVLFSAGTLACGFA-------------------- 97 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhc-------cHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 35667777778888888888763 4432 2234566777777766665443
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.+++....++.|+++....+....++.+..|++.|+..+|++....++|..+++.+.+.+.+
T Consensus 98 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 98 ----PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred ----ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345566778999999999999999999999999999999999999999999999998877643
No 122
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.04 E-value=0.00027 Score=60.02 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=77.6
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
+...+..++..|+.+++ .+|.+ ..+-+.++..+.+++.+..... .
T Consensus 5 ~~~~~~~~~~~~~~g~~----~d~~g-------~~~~~~~~~~~~~~~~~~~~~~------------------------~ 49 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLL----TDRFG-------RKPVLLVGLFIFVLSTAMFALS------------------------S 49 (141)
T ss_pred EeehhHHHHHHhhHHHH----Hhhcc-------hhHHHHHHHHHHHHHHHHHHHh------------------------c
Confidence 34455666667766664 23322 2233556666666665554432 2
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+.+++....++.+++.....+.....+.+..|++.|+..+|+......+|..+++.+.+.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 111 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA 111 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh
Confidence 24455567788999999999999999999999999999999999999999999999988765
No 123
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.03 E-value=0.00078 Score=73.00 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec---------
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD--------- 102 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~--------- 102 (484)
.-..+|++|.++.|+|...+.|--.+++=|-..++ .....++++|..--+|.++|.+++++.-+-
T Consensus 235 ~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~------~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~ 308 (735)
T KOG3626|consen 235 YPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK------NSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPI 308 (735)
T ss_pred hhHHHHHHHHHHhhcCCCCCccCCCcccccccccc------CCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCC
Confidence 34568999999999999988776666655554432 235789999999999999999998765221
Q ss_pred ----------ccccccchhhhHHHHHHHHHHHhccce
Q 011513 103 ----------VSWAWGLGIPAFMMFLSCAMFFLGSRL 129 (484)
Q Consensus 103 ----------~g~~~~F~i~~~~~~l~~i~~l~~~~~ 129 (484)
--||++|++++.+++++.+.+++.-|.
T Consensus 309 ~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~ 345 (735)
T KOG3626|consen 309 GITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKE 345 (735)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 139999999999999998887764443
No 124
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.02 E-value=0.00023 Score=75.55 Aligned_cols=119 Identities=14% Similarity=0.078 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513 307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 386 (484)
Q Consensus 307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~ 386 (484)
..-..++++..+++.++..+.. +.+-++..-++.|+..............+..+.+
T Consensus 365 ~~~~~~~ll~~gl~~~~~p~~~------------------------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~ 420 (509)
T KOG2504|consen 365 LVLFLLTLLIAGLARLFLPFAT------------------------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLE 420 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChh
Confidence 3346667777777765544432 2233444557778887777777778888999999
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513 387 MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 464 (484)
Q Consensus 387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~ 464 (484)
.-+...|+..+..+++.++|+.+.+.+.+.++ +++..|...++..+++.+.+.+....+++++
T Consensus 421 ~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg---------------~Y~~~f~~~g~~~~~s~~~~~~~~~~~~~~~ 483 (509)
T KOG2504|consen 421 KLSNAYGLLLLFQGIGALVGPPIAGLLYDITG---------------NYDHAFYFCGLCFLLSAVLLLILRECLKRRE 483 (509)
T ss_pred hcchHHHHHHHHhHHHHHcCcccceeeeeccC---------------CeeeehhhcChHHHHHHHHHHHhHHHHHhcc
Confidence 99999999999999999999999988777652 2455666677777777666655542344443
No 125
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.02 E-value=0.00052 Score=71.69 Aligned_cols=60 Identities=8% Similarity=-0.138 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhhee
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVY 98 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~ 98 (484)
.+...+++.+++.++| |...+.....+.++|++++ +..++.++....|+|..++..+.+.
T Consensus 126 ~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 126 TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3577899999999998 6677889999999998632 3567888777778888766555433
No 126
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=97.99 E-value=0.00024 Score=71.72 Aligned_cols=87 Identities=11% Similarity=0.061 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc---ccccchh
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS---WAWGLGI 111 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g---~~~~F~i 111 (484)
+.+++.-.+++++-|-| ....+.+...||+++ ...+..++= +-|+|..+...+++++....| |+.+-.+
T Consensus 106 ~~ll~~gll~G~~GasF-av~m~~~s~~fP~~~------qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i 177 (417)
T COG2223 106 WQLLVIGLLLGLAGASF-AVGMPNASFFFPKEK------QGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGI 177 (417)
T ss_pred HHHHHHHHHHhccccee-hcccccccccCChhh------hhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45666667777776665 556678889999753 245777777 899999999999999998899 9999999
Q ss_pred hhHHHHHHHHHHHhccce
Q 011513 112 PAFMMFLSCAMFFLGSRL 129 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~ 129 (484)
..+.++++.+.+++..+.
T Consensus 178 ~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 178 YVVALAIAAVLAWLGMND 195 (417)
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 999999988888775443
No 127
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.92 E-value=0.0002 Score=74.15 Aligned_cols=159 Identities=12% Similarity=0.147 Sum_probs=110.5
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+...+++-..-+++-++..++ ++|+ ...+-|.+|+.+.++=++.+.+++
T Consensus 409 Gv~~a~~~~gEI~~~ffs~kl----I~ki-------GHv~v~~lgLa~~~~Rf~~~S~L~-------------------- 457 (618)
T KOG3762|consen 409 GVVSALCHAGEILFYFFSFKL----IEKI-------GHVNVMYLGLACNVGRFLYYSYLQ-------------------- 457 (618)
T ss_pred eehhhhhccchHHHHHHHHHH----HHHh-------cccceeeehhhHHHHHHHHHHHhc--------------------
Confidence 444445555555555554443 4553 334557788888887777776653
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHH-HHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFV-GFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l-~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
++|..+|--++.++.-.+++.+..+++...+|++++..++|+.-. ..++|.-+|+++++.+...- |
T Consensus 458 ----n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f-------g-- 524 (618)
T KOG3762|consen 458 ----NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF-------G-- 524 (618)
T ss_pred ----CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee-------h--
Confidence 344455666999999999999999999999999999999998774 44777777777777664321 1
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN 478 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (484)
...+|...++.+++.+++++.+-+..+++...|++..+.+++.+
T Consensus 525 -------~~ttf~~~giAcl~~l~~~~~iq~~l~~~~~i~~~~~~e~~s~s 568 (618)
T KOG3762|consen 525 -------ARTTFRIFGIACLVTLALFISIQLLLKRRGFIKEQGLLEMESTS 568 (618)
T ss_pred -------hHHHHHHHHHHHHHHHHHHHHhhhhhccccccCccCCcCccccc
Confidence 24577778888888888888887777777666665555554433
No 128
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=97.92 E-value=0.00099 Score=68.30 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=91.7
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..|+.+++. +|++ ..+-+.++.++.+++.+.....
T Consensus 57 g~~~~~~~~~~~~~~~~~g~l~----dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 104 (408)
T PRK09874 57 GLVFSITFLFSAIASPFWGGLA----DRKG-------RKIMLLRSALGMGIVMVLMGLA--------------------- 104 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----hhhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4456666777788888877763 3432 1223556666666666554442
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.+++..+ .+...+.+.+..|++.|+..+|+......+|..+++.+.+.+.+.. +|
T Consensus 105 ---~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~--- 171 (408)
T PRK09874 105 ---QNIWQFLILRALLGLLGGF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY------GL--- 171 (408)
T ss_pred ---hhHHHHHHHHHHHHHhhhh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---
Confidence 2355666777888888765 4667788889999999999999999999999999999988765322 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|++.+++.++..+...+.
T Consensus 172 -------~~~~~~~~~~~~~~~~~~~~~ 192 (408)
T PRK09874 172 -------RPVFFITASVLFLCFLVTLFC 192 (408)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666555544443
No 129
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00048 Score=71.38 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccC--
Q 011513 307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-- 384 (484)
Q Consensus 307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-- 384 (484)
.+-+.+|.++.+++.+...+... -+.++.+...++.++|-....+.-++++.+.+.
T Consensus 302 k~~~~~~~~~~~i~~~~~~f~~~----------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyg 359 (467)
T COG2211 302 KKLFLIGLLLLAVGYLLLYFTPA----------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYG 359 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcC----------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHH
Confidence 34577888888888888777531 234455556688888888888888888887665
Q ss_pred -----chhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513 385 -----ENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 416 (484)
Q Consensus 385 -----~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~ 416 (484)
++..|.+-|.+.+..=+|..+++.+.+++-..
T Consensus 360 e~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~ 396 (467)
T COG2211 360 EWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGA 396 (467)
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888887776543
No 130
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.90 E-value=0.00097 Score=69.03 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=89.6
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+++.+...+..++..|+.+++ .+|++ ..+-+.+|+++.+++.+.......
T Consensus 40 ~g~l~s~~~~g~~i~~~~~g~l----~~r~G-------~r~~~~~g~~l~~~g~~l~~~~~~------------------ 90 (410)
T TIGR00885 40 AALVQSAFYGGYFIMAIPAAIF----MKKLS-------YKAGILLGLFLYALGAFLFWPAAE------------------ 90 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 4667778888888888887775 45543 334577888888888766543321
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.++++...++.|+|..+..+....++.+.+|++.++..+++.....++|..+|+.++..+.
T Consensus 91 ---~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 ---IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred ---hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1345566677789999999999999999999999999999999999999999999999987664
No 131
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=97.90 E-value=0.001 Score=68.09 Aligned_cols=135 Identities=16% Similarity=0.153 Sum_probs=93.9
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+..++..|+.+++. +|.++ .+-+.+|.++.+++.......
T Consensus 41 ~~~~~~~~~~~~~~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~i~~~~~~~~--------------------- 88 (392)
T PRK10473 41 HIAFSVYLAGMAAAMLFAGKIA----DRSGR-------KPVAIPGAALFIIASLLCSLA--------------------- 88 (392)
T ss_pred HHHHHHHHHHHHHHHHhHhHHH----HHhCC-------hHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 4455666666777788888764 44321 123556777777776665442
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|++.....+.....+.+..|++.|+..+|+++....+|..+++.+++.+.+.. +|
T Consensus 89 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~------g~--- 156 (392)
T PRK10473 89 ---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF------PW--- 156 (392)
T ss_pred ---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc------Ch---
Confidence 234556667789999999999999999999999999999999999988999999998887764321 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFL 454 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~ 454 (484)
...|++.++++++..++..
T Consensus 157 -------~~~~~~~~~~~~i~~~~~~ 175 (392)
T PRK10473 157 -------QSLFYTMAAMGILVLLLSL 175 (392)
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 3455666666555554433
No 132
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=97.89 E-value=0.00061 Score=71.08 Aligned_cols=144 Identities=14% Similarity=0.094 Sum_probs=94.3
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..++.+++ .+|+++ .+-+.+|.++.+++.+..+....
T Consensus 64 g~~~~~~~~~~~~~~~~~G~l----~dr~g~-------~~~~~~~~~~~~~~~~~~~~~~~------------------- 113 (438)
T TIGR00712 64 GFALSAISIAYGFSKFIMGSV----SDRSNP-------RVFLPAGLILSAAVMLLMGFVPW------------------- 113 (438)
T ss_pred HHHHHHHHHHHHHhhhccchh----hhccCC-------ceehHHHHHHHHHHHHHHhcccc-------------------
Confidence 455566666667777777765 344422 12355677777777666544321
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
...+.+.+....++.++++....+...+.+.+..|++.||..+|+++...++|..+++.+.+...... .+|
T Consensus 114 -~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w--- 184 (438)
T TIGR00712 114 -ATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDW--- 184 (438)
T ss_pred -ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhh---
Confidence 01234445566788899998888888899999999999999999999999999999887765432111 134
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
...|++.++++++..++..++.|
T Consensus 185 -------~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 185 -------HAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566666666665554444443
No 133
>PRK10504 putative transporter; Provisional
Probab=97.89 E-value=0.00088 Score=70.40 Aligned_cols=137 Identities=11% Similarity=0.151 Sum_probs=93.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+..|+.+++ .+|++ ..+-+..++++.+++.+..++.
T Consensus 48 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 95 (471)
T PRK10504 48 HMVIVSYVLTVAVMLPASGWL----ADRVG-------VRNIFFTAIVLFTLGSLFCALS--------------------- 95 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------hHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 345555556666777777765 34432 1233455666666666554332
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|+|.....|.....+.+..|++.++..+|+......+|..+|+.+++.+.+.. +|
T Consensus 96 ---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~------gw--- 163 (471)
T PRK10504 96 ---GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA------SW--- 163 (471)
T ss_pred ---CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc------cH---
Confidence 234556677899999999999999999999999999999999999999999999999988875422 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|.+.+.++++..+.....
T Consensus 164 -------~~~f~~~~~~~~l~~~~~~~~ 184 (471)
T PRK10504 164 -------HWIFLINIPVGIIGAIATLML 184 (471)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555554444433
No 134
>TIGR00895 2A0115 benzoate transport.
Probab=97.88 E-value=0.0002 Score=72.76 Aligned_cols=112 Identities=13% Similarity=0.180 Sum_probs=83.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+..++..++.+++. +|++ ..+-+.+|.++.+++.+...+.
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~----d~~g-------~~~~~~~~~~~~~~~~~~~~~~--------------------- 102 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLA----DRIG-------RKRVLLWSILLFSVFTLLCALA--------------------- 102 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHhh-------hHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 4555666666677777766653 3432 2234566777777666665442
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.+++.....+....++.+..|++.|+..+|+......+|..+++.+++.+.+
T Consensus 103 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~ 166 (398)
T TIGR00895 103 ---TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP 166 (398)
T ss_pred ---cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhh
Confidence 2344566678899999999999999999999999999999999999999999999999877653
No 135
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.87 E-value=0.00041 Score=72.37 Aligned_cols=88 Identities=11% Similarity=-0.043 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhh
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPA 113 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~ 113 (484)
.....+.+++..+|.....-...++..+.-.++..+ +...-++.|.+..+|++++..+.|++.++.+++..|.+++
T Consensus 86 ~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 86 AAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 334566777889999999999999999887655322 3455668889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHh
Q 011513 114 FMMFLSCAMFFL 125 (484)
Q Consensus 114 ~~~~l~~i~~l~ 125 (484)
+.-.+..+..++
T Consensus 162 ~~~~l~~~~~~~ 173 (433)
T PF03092_consen 162 ALPLLMLIVALF 173 (433)
T ss_pred HHHHHHHHHHHH
Confidence 777766554443
No 136
>PRK03699 putative transporter; Provisional
Probab=97.86 E-value=0.0012 Score=67.68 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+..++..++.+++. +|++ ..+-+.++.++.+++.+..++.
T Consensus 45 g~~~s~~~~~~~i~~~~~g~l~----dr~g-------~r~~~~~~~~~~~i~~~l~~~~--------------------- 92 (394)
T PRK03699 45 SNTFTFLNAGILISIFLNAWLM----EIIP-------LKRQLIFGFALMILAVAGLMFS--------------------- 92 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhh-------HHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 4555666667777777777753 3432 2234566777777776665543
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.|+++....+.....+.+..|++.|+..++......++|..+++.+.+.+.
T Consensus 93 ---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 155 (394)
T PRK03699 93 ---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLL 155 (394)
T ss_pred ---chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234556677889999999888888999999999999999999988888899999888876653
No 137
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=97.85 E-value=0.00027 Score=71.35 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=90.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
.+|.+-+.+|++++++..+.+++.+ |.+.++..+++.|+-+..-.|.....++.--
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~------------------------s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wf 146 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP------------------------SLFLFAVLWVLNGWFQGMGWPPCARTITHWF 146 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh------------------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHc
Confidence 4555668999999999999988753 4556666778888888888899999999999
Q ss_pred CchhhhhHHhhHHHHHHHHHHHHHHHh--HhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 384 PENMRSIGGSLAFVGFAISNYLNGFLI--SMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 384 P~~~~g~~~gl~~l~~~iG~~lg~~l~--~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
|++.||+..++|+.+.++|+.+.+.+. +.+... .+| ...|++-++++++..++.++..|.
T Consensus 147 sr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~------~~w----------~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 147 SRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFH------GGW----------RAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred CccccCceEEEehhhhhcccchHHHHHHHHHHHhc------cch----------hHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999888 554321 134 345667777777777666554443
No 138
>PRK12307 putative sialic acid transporter; Provisional
Probab=97.84 E-value=0.00098 Score=68.92 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=86.5
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+..++..|+.+++ .+|++ ..+-+.+|.++.+++.+..++.+
T Consensus 56 ~~~~~~~~~~~~l~~~~~g~l----~dr~g-------~r~~l~~~~~~~~~~~~~~~~~~-------------------- 104 (426)
T PRK12307 56 AFLATAAFIGRPFGGALFGLL----ADKFG-------RKPLMMWSIVAYSVGTGLSGLAS-------------------- 104 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhC-------ChHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 456667777777888877775 34432 22446678888888777665542
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+.+++....++.|+|+....+....++.+..|++.|+..+|++....++|..+++.+.+.+.
T Consensus 105 ----~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~ 166 (426)
T PRK12307 105 ----GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFA 166 (426)
T ss_pred ----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHc
Confidence 35566777899999999999999999999999999999999999999999999988876654
No 139
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.84 E-value=0.00084 Score=70.54 Aligned_cols=212 Identities=14% Similarity=0.052 Sum_probs=115.3
Q ss_pred HHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCC
Q 011513 222 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301 (484)
Q Consensus 222 k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~ 301 (484)
.+++++.-.+...-+.|.......+.+ .+..+++.. -.+....+.++.-++.+|+.+++.+....|+++|
T Consensus 4 ~~li~~~~~~~Giq~~~~l~~~~l~~y-l~~lg~~~~--------~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR- 73 (477)
T TIGR01301 4 RKLLRVASVAAGVQFGWALQLSLLTPY-VQELGIPHA--------WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR- 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHH--------HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh-
Confidence 344554555555555555544333333 232222211 1356677788888999999998876544454322
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC-CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 011513 302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG-AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 380 (484)
Q Consensus 302 ~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~ 380 (484)
++. +..|.+..+++++.+++........ + ++.+ .......++.+..+.+..++--...+..-+++.
T Consensus 74 ---rp~--il~g~~~~~~~l~ll~~~~~~~~~~----~----~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALia 140 (477)
T TIGR01301 74 ---RPF--IAAGAALVAFAVILIGFAADIGHLF----G----DNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLA 140 (477)
T ss_pred ---HHH--HHHHHHHHHHHHHHHHhCchhhhhc----c----ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 111 3446667777777766543211000 0 0000 011122234444444555566666677789999
Q ss_pred cccCchhh--hhHHhhHHHHHHHHHHHHHHHhHhhcccc--c--CCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHH
Q 011513 381 KQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVHRFT--K--GASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFL 454 (484)
Q Consensus 381 ~~aP~~~~--g~~~gl~~l~~~iG~~lg~~l~~~~~~~~--~--~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~ 454 (484)
+.+|++.| +...+......++|+.+|..++++..... + .....+.++ .+....|.+-+++.++..++-.
T Consensus 141 Dl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~F~i~a~~l~i~~l~t~ 215 (477)
T TIGR01301 141 DLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSC-----ANLKSCFLIDIILLAILTYIAL 215 (477)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhccccccccccccc-----chHHHHHHHHHHHHHHHHHHHe
Confidence 99999976 57888888899999999999887642111 0 000011111 1345566666666666555555
Q ss_pred Hhhhccc
Q 011513 455 LCAKWYK 461 (484)
Q Consensus 455 ~~~~~~~ 461 (484)
+..|-++
T Consensus 216 ~~v~E~~ 222 (477)
T TIGR01301 216 SAVKENP 222 (477)
T ss_pred eeeeccC
Confidence 5555443
No 140
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=97.84 E-value=0.00068 Score=68.76 Aligned_cols=136 Identities=14% Similarity=0.160 Sum_probs=95.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..++.+++ .+|++ ..+-+.+|.++.+++.......+
T Consensus 29 ~~~~~~~~~~~~~~~~~~g~l----~d~~g-------~~~~~~~~~~~~~i~~~~~~~~~-------------------- 77 (377)
T PRK11102 29 QMTLSAYILGFAIGQLFYGPM----ADSFG-------RKPVILGGTLVFALAAVACALAQ-------------------- 77 (377)
T ss_pred HHHHHHHHHHHHHHHHhhchH----HhhcC-------ChHHHHHHHHHHHHHHHHHHHHc--------------------
Confidence 445566666667777776664 33432 23346678877777777765532
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
+.+.+....++.+++.....+...+++.+..|++.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 78 ----~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------~~--- 144 (377)
T PRK11102 78 ----TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWF------SW--- 144 (377)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------Ch---
Confidence 23445567788999999999999999999999999999999999999999999999987765422 23
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
...|+..++++++..+....
T Consensus 145 -------~~~~~~~~~~~~~~~~~~~~ 164 (377)
T PRK11102 145 -------HAIFWVLALAAILAAALVFF 164 (377)
T ss_pred -------HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555444433
No 141
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.84 E-value=0.0014 Score=67.96 Aligned_cols=134 Identities=10% Similarity=0.104 Sum_probs=92.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+.+++.+.+ .+|+++ .+-+..|+++.+++.+..+..
T Consensus 54 ~~~~s~~~~~~~~~~~~~G~l----~dr~Gr-------r~~l~~~~~~~~~~~~~~~~a--------------------- 101 (413)
T PRK15403 54 PASVSLYLAGGMALQWLLGPL----SDRIGR-------RPVLITGALIFTLACAATLFT--------------------- 101 (413)
T ss_pred HHHHHHHHHHHHHHHHhhhHH----HHHcCc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 344445555556666666554 455432 234666777777666655443
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...+++|+++.+..+.....+.+..|++.++..+|++.....+|..+|+.+++.+.+.. +|
T Consensus 102 ---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~------gw--- 169 (413)
T PRK15403 102 ---TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFV------HW--- 169 (413)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CH---
Confidence 245677778899999998877777788888899999999999999999999999999987765321 33
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFF 453 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~ 453 (484)
...|+..+++.++..+..
T Consensus 170 -------~~~f~~~~~~~~i~~~~~ 187 (413)
T PRK15403 170 -------KVLFAIIAVMGLIAFVGL 187 (413)
T ss_pred -------HHHHHHHHHHHHHHHHHH
Confidence 356666666666655443
No 142
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=97.82 E-value=0.00046 Score=72.66 Aligned_cols=147 Identities=12% Similarity=-0.031 Sum_probs=98.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+..|+.+.+ .+|+ ++.+-+.+++++.+++.+..+..-..
T Consensus 67 g~~~s~~~~~~~~~~~~~G~l----~Dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~~------------------ 117 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGYY----ADGK-------NTKQFLPFLLILSAICMLGFGASLGS------------------ 117 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhH----hhcc-------CccchHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 455566666667777777775 3443 23344667777766666655543210
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
...+.+.++...++.|++|....|.....+.+..|++.||..+|++....++|..+++.+......... .++|
T Consensus 118 -~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~---~~~~--- 190 (467)
T PRK09556 118 -GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF---DGHV--- 190 (467)
T ss_pred -ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc---cCcc---
Confidence 113466677788999999999999999999999999999999999999999999999888755432100 0123
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
...|...++++++..++.+++.+
T Consensus 191 -------~~~f~~~g~~~~~~~i~~~~~~~ 213 (467)
T PRK09556 191 -------IGMFIFPSIIALIIGFIGLRYGS 213 (467)
T ss_pred -------hhHHHHHHHHHHHHHHHHHHhCC
Confidence 23455566666665555444433
No 143
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=97.81 E-value=0.00024 Score=74.64 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=94.9
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.+.+...+.-++.+++.+++ .+|+++ .+-+.+++++.+++.+...+...
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~------------------- 128 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYL----AGKYVF-------KWSIGIGMFLSSVISIVIPWAAG------------------- 128 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHH----HHHhCc-------chhhHHHHHHHHHHHHHHHHHHH-------------------
Confidence 344555556666667766664 344432 23355666666666555433211
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...+++|++|....|....++.+..|++.||.++|++.....+|..+++.+++.+.+.. .+|
T Consensus 129 ---~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~-----~gw--- 197 (465)
T TIGR00894 129 ---GGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESW-----GGW--- 197 (465)
T ss_pred ---cCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CCC---
Confidence 234567778899999999999999999999999999999999999999999999999988765321 135
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|.+.++++++..+++...
T Consensus 198 -------~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 198 -------PMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred -------CeehhhhhHHHHHHHHHHHHH
Confidence 234555566665555444433
No 144
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=97.81 E-value=0.0023 Score=65.81 Aligned_cols=133 Identities=16% Similarity=0.062 Sum_probs=88.6
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+..|+.+.+ .+|+++ .+-+.++.++.+++.+.....
T Consensus 51 ~~~~~~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~--------------------- 98 (406)
T PRK15402 51 PTSMTAYLAGGMFLQWLLGPL----SDRIGR-------RPVMLAGVAFFILTCLAILLA--------------------- 98 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCC-------hHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 344455556666666766664 344322 233556766666666655443
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|++..+..+.....+.+..|++.++..+++......+|..+++.+++.+.+.. +|
T Consensus 99 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~------~w--- 166 (406)
T PRK15402 99 ---QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVL------PW--- 166 (406)
T ss_pred ---ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc------Cc---
Confidence 234456667788999998888899999999999999999999888877888888888877764321 34
Q ss_pred CccCchhHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~ 452 (484)
...|++.++++++..+.
T Consensus 167 -------~~~~~~~~~~~~~~~~~ 183 (406)
T PRK15402 167 -------RGMFVLFAALAALSFFG 183 (406)
T ss_pred -------cHHHHHHHHHHHHHHHH
Confidence 23556666666555443
No 145
>PRK03633 putative MFS family transporter protein; Provisional
Probab=97.80 E-value=0.0028 Score=64.63 Aligned_cols=112 Identities=9% Similarity=0.010 Sum_probs=86.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+...+..|+.+++ .+|++ ..+.+.+|.++.+++++..++.
T Consensus 43 ~G~~~s~~~l~~~~~~~~~g~l----~dr~g-------~k~~~~~~~~~~~~~~~~~~~~-------------------- 91 (381)
T PRK03633 43 VGVVSSSYFTGNLVGTLLAGYV----IKRIG-------FNRSYYLASLIFAAGCAGLGLM-------------------- 91 (381)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHh--------------------
Confidence 3566777777777888877775 34433 2244677888888877766553
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.|++.....|.....+.+..|++.|+..+|.+.....+|..+|+.+++.+.
T Consensus 92 ----~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~ 154 (381)
T PRK03633 92 ----VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVS 154 (381)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 235566778899999999998988888888999999999999999999999999999987764
No 146
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=97.76 E-value=0.0024 Score=64.31 Aligned_cols=111 Identities=12% Similarity=0.112 Sum_probs=79.3
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+++.+...+..++..|+.+++ .+|++ ..+.+.+|.++.+++.+..++..
T Consensus 39 ~~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~i~~~~~~~~~------------------- 88 (366)
T TIGR00886 39 LGNLVAVPVLAGAVLRIILGFL----VDKFG-------PRYTTTLSLLLLAIPCLWAGLAV------------------- 88 (366)
T ss_pred hhHhhHHHHHHHHHHHHHHHHH----HHHhC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 3566777777788888887775 34432 22346678888888877766542
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
.+.++++...++.|++.... +.....+.+..|++.|+..++++.....+|..+++.+++.+
T Consensus 89 ----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l 149 (366)
T TIGR00886 89 ----QSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI 149 (366)
T ss_pred ----hhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 03555666778889987654 45678999999999999999998877777777766665544
No 147
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=97.74 E-value=0.0025 Score=66.76 Aligned_cols=110 Identities=14% Similarity=-0.001 Sum_probs=76.8
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+.+|+.+++ .+|++ ..+-+.+|.++.+++.+..++...
T Consensus 66 g~~~~~~~i~~~~~~~~~G~l----~Dr~g-------~k~~l~~~~~~~~i~~~~~~~~~~------------------- 115 (452)
T PRK11273 66 GFALSGISIAYGFSKFIMGSV----SDRSN-------PRVFLPAGLILAAAVMLFMGFVPW------------------- 115 (452)
T ss_pred HHHHHHHHHHHHHHHhhhhhh----hhccC-------CchhHHHHHHHHHHHHHHHHhhhc-------------------
Confidence 444555666677777777775 34543 223466777777777776665421
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHH-HHHH
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYL-NGFL 409 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~l-g~~l 409 (484)
...+.++++...++.++++....|.....+.+..|++.|+..+|+++...++|..+ ++.+
T Consensus 116 -~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 116 -ATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred -ccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 01234455666788999998888877788889999999999999999988888754 4443
No 148
>PRK12382 putative transporter; Provisional
Probab=97.74 E-value=0.0016 Score=66.55 Aligned_cols=119 Identities=9% Similarity=-0.027 Sum_probs=84.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+.+|+.+++. +|+++ .+-+.+|.+..+++.+........ ..
T Consensus 54 g~~~s~~~~~~~i~~~~~G~l~----Dr~g~-------r~~l~~~~~~~~~~~~~~~~~~~~------~~---------- 106 (392)
T PRK12382 54 GIAVGIQFLATVLTRGYAGRLA----DQYGA-------KRSALQGMLACGLAGLAYLLAAIL------PV---------- 106 (392)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH----Hhhcc-------hHHHHHHHHHHHHHHHHHHhhhcc------cc----------
Confidence 5667777788888889888864 44432 233556666555544332221100 00
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
....+.+++....++.|+|+....+...+.+.+..|++.|+..+|.+.....+|..+++.+++.+.
T Consensus 107 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~ 172 (392)
T PRK12382 107 SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLH 172 (392)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 002356667778899999999999999999999999999999999999888999999999987764
No 149
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.74 E-value=0.0071 Score=62.89 Aligned_cols=83 Identities=8% Similarity=0.066 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
+.+-+.++++.-++..+..++. .+++.+....++.|++|.... ....++++..|+
T Consensus 91 ~K~vL~l~~l~Wsl~t~L~~fa------------------------~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~ 145 (511)
T TIGR00806 91 YKPVLVLQALSFVCVWLLLLLG------------------------TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPP 145 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCH
Confidence 3345667777777766666664 246677788899999999999 999999999999
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
+.|++++|++..+..+|..+++.+++++
T Consensus 146 kER~ratsi~~sg~~vG~~Ia~~L~qll 173 (511)
T TIGR00806 146 SRYQRAAAYSRAAVLLGVFLSSVLGQLL 173 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999884
No 150
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=97.73 E-value=0.0007 Score=70.36 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=84.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+...+..|+.+++ .+|++ +.+-+.+|.++.+++.+...+...
T Consensus 74 ~~~~~~~~~~~~i~~~~~g~l----~d~~g-------rr~~~~~~~~~~~~~~~~~~~~~~------------------- 123 (481)
T TIGR00879 74 GLVVSIFLVGGFIGALFAGWL----SDRFG-------RKKSLLIIALLFVIGAILMGLAAF------------------- 123 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhHh----hhhhh-------hHHHHHHHHHHHHHHHHHHHHhcc-------------------
Confidence 556666677777888887775 34432 223466777777777766655321
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLI 410 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~ 410 (484)
..+.++++...++.|+|+....+....++.+..|++.|+..+|++.....+|..+++.++
T Consensus 124 --~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 124 --ALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred --ccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 123446667789999999999999999999999999999999999999999999999987
No 151
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00051 Score=72.35 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
|.+.++...+++|+-|....|....+..+.-.++.||..+|+|+...++|+.+|+++...+.+..+..+..+|
T Consensus 133 s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW------- 205 (495)
T KOG2533|consen 133 SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGW------- 205 (495)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCc-------
Confidence 3445666779999999999999999999999999999999999999999999999998776543333333455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLLCAKWYKY 462 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~~~~~~~~ 462 (484)
.+.|.+-|+++++..++..++.+.-..
T Consensus 206 ---~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 206 ---RWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ---eeehhHHHHHHHHHHheEEEEecCChh
Confidence 578899999998888776666655544
No 152
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=97.70 E-value=0.0014 Score=66.95 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
+.++++...++.|+||.. .+.....+.+..|++.|++.+|++.....+|..+++.++..+.+. .+|
T Consensus 78 ~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gW------- 143 (368)
T TIGR00903 78 NYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGL------- 143 (368)
T ss_pred cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cch-------
Confidence 567788889999999986 455666678899999999999999999999999999998887542 246
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh
Q 011513 433 GRLDYFYYLVAALGLLNFGFFLLCA 457 (484)
Q Consensus 433 ~~~~~~f~~la~l~~~~~i~~~~~~ 457 (484)
...|...++++++..++..+..
T Consensus 144 ---r~~f~~~~~l~~~~~~~~~~~l 165 (368)
T TIGR00903 144 ---QLLIIPIAAVAAAGIILVLAAL 165 (368)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHc
Confidence 3466666777766655544433
No 153
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=97.69 E-value=0.0021 Score=66.05 Aligned_cols=111 Identities=11% Similarity=0.062 Sum_probs=86.5
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+.+.+...+.+|+.+++. +|++ ..+-+..|+++.+++.+..++.+
T Consensus 46 ~g~~~s~~~~~~~l~~~~~g~l~----dr~G-------~r~~l~~~~~l~~~~~~~~~~a~------------------- 95 (393)
T PRK09705 46 AALLTALPVVTMGGLALAGSWLH----QHVS-------ERRSVAISLLLIAVGALMRELYP------------------- 95 (393)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH----HHhC-------chHHHHHHHHHHHHHHHHHHHCc-------------------
Confidence 35667777778888888877753 4432 33457788999999988877652
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+.++++...++.|+|+....+...+.+.+..| +.|+.++|++......|..+|+.+++.+.
T Consensus 96 -----~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~ 156 (393)
T PRK09705 96 -----QSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLV 156 (393)
T ss_pred -----chHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24455667899999999999999999988887 67999999999988888888888887654
No 154
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.69 E-value=0.00047 Score=68.65 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=52.1
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+.....+.++....+.+....++.+..|.+.||..+|+.....+++..+||++.+.+.
T Consensus 355 l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~ 412 (451)
T KOG2615|consen 355 LYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIF 412 (451)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeE
Confidence 3345678888999999999999999999999999999999999999999999997765
No 155
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=97.68 E-value=0.0014 Score=65.86 Aligned_cols=137 Identities=15% Similarity=0.199 Sum_probs=92.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..++..+...+..|+.+++. +|+++| +-+.+|.++.+++.+..++.+
T Consensus 40 ~g~~~s~~~~~~~~~~~~~G~l~----d~~G~r-------~~~~~~~~~~~~~~~~~~~~~------------------- 89 (377)
T TIGR00890 40 VAIWFTLLLIGLAMSMPVGGLLA----DKFGPR-------AVAMLGGILYGLGFTFYAIAD------------------- 89 (377)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHH----HHcCcc-------chhHHhHHHHHHHHHHHHHHH-------------------
Confidence 35667777778888888888763 454322 335677888888777666543
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
+.+.+....++.|+++....+.....+.+..|+ .|+.+++++....++|..+++.+.+.+.+. .+|
T Consensus 90 -----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------~~~-- 155 (377)
T TIGR00890 90 -----SLAALYLTYGLASAGVGIAYGIALNTAVKWFPD-KRGLASGIIIGGYGLGSFILSPLITSVINL------EGV-- 155 (377)
T ss_pred -----HHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCc-ccHHHHHHHHHhcchhHhHHHHHHHHHHhc------ccH--
Confidence 344555677799999988888888888777775 599999999999999988765555443211 123
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|...++++++..+...+.
T Consensus 156 --------~~~f~~~~~~~~~~~~~~~~~ 176 (377)
T TIGR00890 156 --------PAAFIYMGIIFLLVIVLGAFL 176 (377)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHh
Confidence 456666677666665544443
No 156
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=97.68 E-value=0.0015 Score=64.82 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+..++..|+.+++. +|.++| +-+.+|.++.+++.+.....
T Consensus 37 ~~~~~~~~~~~~~~~~~~g~~~----d~~g~r-------~~~~~~~~~~~~~~~~~~~~--------------------- 84 (352)
T cd06174 37 GLIVSAFSLGYALGSLLAGYLS----DRFGRR-------RVLLLGLLLFALGSLLLAFA--------------------- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHhCCc-------hhhHHHHHHHHHHHHHHHHh---------------------
Confidence 5566777777788888877753 443322 24667777777777766553
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.+++....++.+++..+..+....+..+..|++.|+..+|+.....++|..+++.+.+.+.+
T Consensus 85 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 148 (352)
T cd06174 85 ---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148 (352)
T ss_pred ---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345666788999999999999999999999999999999999999999999999999887754
No 157
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0019 Score=61.93 Aligned_cols=309 Identities=13% Similarity=0.146 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
...+....|++++++|.--.-..-+.+...+|+..+ +.-.|.++-...-+|+.+-..+.+++.++.+= .|.
T Consensus 134 ~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlSvAR~GstvNf~lm~~ly~~~~~--~~~- 204 (459)
T KOG4686|consen 134 HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLSVARLGSTVNFLLMPFLYDTMGR--MFP- 204 (459)
T ss_pred HHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHHHHHhhceeeeeecHHHHHHHHH--hcc-
Confidence 356778889999999988887778888888887532 57899999999999999888888888876542 121
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
...-..+++.+. +..+.- .+-+..+........ +.+..++.++
T Consensus 205 ~~ghT~LG~~l~-~~~~tc-------------~~slical~lg~~D~--rAerilh~e~--------------------- 247 (459)
T KOG4686|consen 205 GVGHTLLGLWLC-FEVKTC-------------KQSLICALSLGLSDD--RAERILHLEE--------------------- 247 (459)
T ss_pred cchHHHHHHHHH-HHHHHH-------------HHHHHHHHHhhhhhh--HHHHHHhhhc---------------------
Confidence 111111222111 110000 000011110000000 0000000000
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccccccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASY 271 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~ 271 (484)
. ..|. +.+.+|++..- .|+|...++..+.|--....+..-.+-...++| +++..-
T Consensus 248 ------g---~~Ge---------~pkLtdv~~f~--ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfG-----lS~~~a 302 (459)
T KOG4686|consen 248 ------G---FLGE---------EPKLTDVNTFY--PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFG-----LSAVSA 302 (459)
T ss_pred ------C---cccC---------CcccccccccC--ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhC-----CChhhc
Confidence 0 0000 00113333321 344444444333332222222111111111233 444444
Q ss_pred chhhHHH---HHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 272 AIFSMLG---LTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 272 ~~~n~~~---iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
.++|+.. ..+++|+.+.++ +|++++ ...+..+.+....+=....+..
T Consensus 303 ~~i~s~vy~Isav~spvfg~i~----Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft~-------------------- 352 (459)
T KOG4686|consen 303 GNILSTVYGISAVLSPVFGAIS----DKYGFN------LWWVASACILTLLGHSGLFFTF-------------------- 352 (459)
T ss_pred cchhhhhhhhhhhhhhhHHHhH----hhhcce------ehhHHHHHHHHHHHhhhHHhhh--------------------
Confidence 4555543 456678888764 444322 2334444444444433333321
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.++ | ..+.++|++.-+..-..+..+....|++.-|+.-|.....+++|-.+.+.+.+++.+..+ ++
T Consensus 353 ---lsP-y--~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g-----~y--- 418 (459)
T KOG4686|consen 353 ---LSP-Y--TSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG-----SY--- 418 (459)
T ss_pred ---ccH-H--HHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC-----ch---
Confidence 222 2 245778888888888889999999999999999999999999999999999999876432 21
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
. .++.||...+.+++....+.+.+-|+
T Consensus 419 -~---~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 419 -D---NLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred -h---hHHHHHHHHHHHHHHHHHHHhheecc
Confidence 1 25778887777777776655554433
No 158
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=97.67 E-value=0.0051 Score=68.21 Aligned_cols=111 Identities=13% Similarity=0.108 Sum_probs=83.5
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+..++..++.+++ ..|++ ..+.+.+++++.+++.++.++.
T Consensus 205 g~l~s~~~lG~iiG~li~G~L----sDR~G-------RR~~lii~lil~~i~~ll~afa--------------------- 252 (742)
T TIGR01299 205 GMLGLIVYLGMMVGAFFWGGL----ADKLG-------RKQCLLICLSVNGFFAFFSSFV--------------------- 252 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 456667777777877777775 34433 2234566666666666555443
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.|+|.....|....++.+..|++.||..++++.....+|..+++.++..+.
T Consensus 253 ---~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il 315 (742)
T TIGR01299 253 ---QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAII 315 (742)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235566778899999999999999999999999999999999999999999999888765543
No 159
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.67 E-value=0.0017 Score=68.55 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=98.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+...+..++.+++. +|. ....+-+.+|.++.+++++..++..
T Consensus 51 g~~~~~~~~~~~~~~~~~G~la----Dr~------~G~~~~l~~~~~~~~~g~~~~~~~~-------------------- 100 (475)
T TIGR00924 51 FIIFGAYSALVYLLTSVGWWFG----DRV------WGTKKTMVLGGIVLMLGHFMLAMSI-------------------- 100 (475)
T ss_pred HHHHHHHHHHHHHHHhhHHHHH----Hhh------cchHHHHHHHHHHHHHHHHHHHhcc--------------------
Confidence 4445555556666666666643 331 1223347778888888877665531
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh---hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM---RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 425 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~---~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w 425 (484)
+.+++....++.++|+.+..|....++.++.|++. |+...++++...++|..+|+.+++.+.+.. +|
T Consensus 101 ----~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~------g~ 170 (475)
T TIGR00924 101 ----YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY------GY 170 (475)
T ss_pred ----cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc------Ch
Confidence 23345556778999999999999999999988754 888999999999999999999998875321 23
Q ss_pred CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513 426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 461 (484)
Q Consensus 426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~ 461 (484)
...|.+.++..+++.+++....+.++
T Consensus 171 ----------~~~f~~~~~~~~~~~l~~~~~~~~~~ 196 (475)
T TIGR00924 171 ----------HVGFNLAAVGMVIGLLTFFAGRHMLR 196 (475)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHcccccc
Confidence 45666666666666666666655554
No 160
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=97.66 E-value=0.0081 Score=64.52 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccccccc
Q 011513 29 PTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWG 108 (484)
Q Consensus 29 ~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~ 108 (484)
.+..+...+..|..+.++|.|... .....++|..+.+ . |..++.+..+..-+...+++.++..+..+.+|||.
T Consensus 126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k---~---R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNK---W---RGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWI 198 (599)
T ss_pred hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccc---h---hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchH
Confidence 445567789999999999988765 4566688988752 2 12233333333223333455555445556799999
Q ss_pred chhhhHHHHHHHHHHHh
Q 011513 109 LGIPAFMMFLSCAMFFL 125 (484)
Q Consensus 109 F~i~~~~~~l~~i~~l~ 125 (484)
|++..+...++++...+
T Consensus 199 ~~~~~i~~~i~~vl~~~ 215 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFF 215 (599)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999888887765433
No 161
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=97.66 E-value=0.004 Score=63.71 Aligned_cols=112 Identities=13% Similarity=0.135 Sum_probs=81.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+..++..|+.+.+. +|++ ..+-+.+|.++.+++.+.....
T Consensus 46 ~~~~~~~~~~~~~~~~~~G~l~----Dr~g-------rr~~~~~~~~~~~~~~~~~~~~--------------------- 93 (394)
T PRK11652 46 QAVMAAYLLTYGLSQLFYGPLS----DRVG-------RRPVILVGMSIFILGTLVALFA--------------------- 93 (394)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH----HhcC-------ChHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4555666667777777777653 4432 2233556777766666554432
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.|++.....+...++..+..|++.++..++.+.....+|..+++.+++.+.+
T Consensus 94 ---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 157 (394)
T PRK11652 94 ---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTT 157 (394)
T ss_pred ---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2345666677889999888888888899999999999999999999999999999988877653
No 162
>PRK03893 putative sialic acid transporter; Provisional
Probab=97.65 E-value=0.0047 Score=65.26 Aligned_cols=111 Identities=16% Similarity=0.166 Sum_probs=83.5
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+..++..++.+++ .+|++ ..+-+.++.++.+++.+..++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l----~dr~g-------~r~~~~~~~~~~~~~~~~~~~~--------------------- 105 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAM----GDRYG-------RRLAMVISIVLFSVGTLACGFA--------------------- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 445555566666666776665 34432 2233566777777777666553
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.+++....++.|++.....+....++.+..|++.|+..+|++....++|..+++.+.+.+.
T Consensus 106 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~ 168 (496)
T PRK03893 106 ---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV 168 (496)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234566677899999999999999999999999999999999999999999999999988765
No 163
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=97.64 E-value=0.0019 Score=66.11 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=86.9
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+...+++|+.+++. +|++ ..+-+.++.++.+++.+...+.... +.
T Consensus 53 ~g~~~~~~~~~~~i~~~~~G~l~----Dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~-------~~-------- 106 (399)
T PRK05122 53 AGLVISLQYLATLLSRPHAGRYA----DTLG-------PKKAVVFGLCGCALSGLLYLLAGLL-------AA-------- 106 (399)
T ss_pred HHHHHHHHHHHHHHhchhhHhHH----hccC-------CcchHHHHHHHHHHHHHHHHHhhhh-------hc--------
Confidence 35667777788888888888863 4433 2233566666666655544433210 00
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
....+.++++...++.|+|+....+.....+.+..|++.|+..+|+......+|..+|+.+++.+.
T Consensus 107 -~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~ 172 (399)
T PRK05122 107 -WPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY 172 (399)
T ss_pred -cchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence 011355667778899999999999999999999999999999999988888899999998887764
No 164
>PRK11010 ampG muropeptide transporter; Validated
Probab=97.60 E-value=0.0028 Score=67.22 Aligned_cols=107 Identities=20% Similarity=0.298 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhh
Q 011513 310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS 389 (484)
Q Consensus 310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g 389 (484)
+.++.++.+++....++.+. ..+.+|+...+++.+++.....+...+++.+..|++.|+
T Consensus 84 ll~~~i~~~~~~~~~a~~~~---------------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg 142 (491)
T PRK11010 84 LLATQLLLLVAIAAMGFLEP---------------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERG 142 (491)
T ss_pred HHHHHHHHHHHHHHHHHcCC---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 55666666666666655421 234667777788888888889999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHH
Q 011513 390 IGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGF 452 (484)
Q Consensus 390 ~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~ 452 (484)
...|+......+|..+++.+...+.+.. .+| ...|++.++++++..+.
T Consensus 143 ~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GW----------r~~f~i~a~l~ll~~l~ 190 (491)
T PRK11010 143 AGAAISVLGYRLAMLVSGGLALWLADRY-----LGW----------QGMYWLMAALLIPCIIA 190 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCH----------HHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887765310 134 34566666666655443
No 165
>PRK10489 enterobactin exporter EntS; Provisional
Probab=97.60 E-value=0.0022 Score=66.31 Aligned_cols=118 Identities=9% Similarity=-0.025 Sum_probs=84.2
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+..++..|+.+++. +|+++| +-+.++.++.+++++..++....
T Consensus 54 ~g~~~~~~~l~~~~~~~~~G~l~----dr~g~~-------~~l~~~~~~~~~~~~~~~~~~~~----------------- 105 (417)
T PRK10489 54 VGLSVTLTGGAMFIGLMVGGVLA----DRYDRK-------KLILLARGTCGLGFIGLALNAFL----------------- 105 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHh----hhcCCc-------eEEEehHHHHHHHHHHHHHHHHc-----------------
Confidence 36667777788888888877753 443221 22445666666666554432110
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
...+.+++....++.+++..+..+...+.+.+..|++.++..++++....++|..+|+.+++.+.+
T Consensus 106 --~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~ 171 (417)
T PRK10489 106 --PEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIA 171 (417)
T ss_pred --CCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 012455666677888999988889999999999999999999999999999999999999887653
No 166
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=97.59 E-value=0.00086 Score=73.36 Aligned_cols=137 Identities=9% Similarity=-0.059 Sum_probs=92.5
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh--hhhh---cc-----
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKR--RSLA---LS----- 337 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~--~~~~---~~----- 337 (484)
.+++.+.+.+.-.+..+++..+ -.| ....+-+++|+++.+++.++.++.+... +... ..
T Consensus 70 ~G~i~s~~~i~~~~~~i~v~~~----~~r-------~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~ 138 (633)
T TIGR00805 70 SGLINGSYEIGNLLLIIFVSYF----GTK-------LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLS 138 (633)
T ss_pred ceeeeehhhHHHHHHHHHHHHh----hcc-------cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccc
Confidence 3566777777777777766654 233 2234558889999999998887764211 0000 00
Q ss_pred --CCCcccc-------------cCCCCc--cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH
Q 011513 338 --RPVGLEQ-------------RRGAIS--SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA 400 (484)
Q Consensus 338 --~g~~~~~-------------~~~~~~--~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~ 400 (484)
+...|.. ++.... ......++..-++.|+|+....+.+..++.+..|++.|+.++|+++....
T Consensus 139 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~ 218 (633)
T TIGR00805 139 SANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAV 218 (633)
T ss_pred ccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHH
Confidence 0000100 000001 11334455678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhcc
Q 011513 401 ISNYLNGFLISMVHR 415 (484)
Q Consensus 401 iG~~lg~~l~~~~~~ 415 (484)
+|..+|+.+++.+..
T Consensus 219 iG~~lG~llgg~l~~ 233 (633)
T TIGR00805 219 FGPAFGYLLGSFCLQ 233 (633)
T ss_pred hhhHHHHHHHHHHHh
Confidence 999999999887653
No 167
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=97.59 E-value=0.0019 Score=66.38 Aligned_cols=109 Identities=12% Similarity=0.075 Sum_probs=82.5
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+...++.|+.+++ .+|+++| +-+.++.++.+++.+..++..
T Consensus 40 ~~~~~~~~~l~~~l~~~~~G~l----aDr~grr-------~vl~~~~~~~~~~~~~~~~~~------------------- 89 (393)
T PRK11195 40 QPLLQMFFVLAYIVLAPFVGAF----ADSFPKG-------RVMFIANGIKLLGCLLMLFGI------------------- 89 (393)
T ss_pred HHHHHHHHHHHHHHHHhhhhHh----hhccCCc-------hhhHHHHHHHHHHHHHHHHHH-------------------
Confidence 3566777778888888988876 4454322 335566666655554433321
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+. +..++++|+++.+..|...+.+.+..|++.|+.++|++.....+|..+|+.+++++.
T Consensus 90 -----~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 90 -----HP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred -----HH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 335678999999999999999999999999999999999999999999999998875
No 168
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=97.57 E-value=0.0067 Score=62.43 Aligned_cols=116 Identities=11% Similarity=0.028 Sum_probs=80.0
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+...+...+..|+.+++ .+|+ ...+-+..|.++.+++.+.......
T Consensus 50 ~g~~~~~~~~~~~i~~~~~g~l----~dr~-------g~k~~l~~~~~~~~~~~~~~~~~~~------------------ 100 (402)
T TIGR00897 50 SASAFTLYGIAAAISAWISGVV----AEII-------GPLKTMMIGLLLWCVGHAAFIVFGL------------------ 100 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH----HHHc-------CcHHHHHHHHHHHHHHHHHHHHHhc------------------
Confidence 3555667777778888887775 3443 2233466777777776554322211
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHH-HHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISN-YLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~-~lg~~l~~~~~ 414 (484)
...+.+.+...+++.|+|.....+.....+.+..|++.|+..+|++....++|. .+++.+++...
T Consensus 101 --~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~ 166 (402)
T TIGR00897 101 --GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI 166 (402)
T ss_pred --cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 012344455677888999888888888888899999999999999999999996 57887776554
No 169
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.016 Score=58.55 Aligned_cols=66 Identities=9% Similarity=0.041 Sum_probs=53.7
Q ss_pred CchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513 30 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 101 (484)
Q Consensus 30 ~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~ 101 (484)
......+|..++++++.|.|..+...++++++.-++++. .+-.++--...-+|+.++|.+++++..
T Consensus 100 ~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a------~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 100 SSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESA------AFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred hhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhH------HHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999887432 234455556778999999999988766
No 170
>PRK11043 putative transporter; Provisional
Probab=97.55 E-value=0.0072 Score=61.99 Aligned_cols=112 Identities=10% Similarity=0.026 Sum_probs=80.1
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..++.+++ .+|+++ .+-+.+|.++.+++.+..++.
T Consensus 44 g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~~~~--------------------- 91 (401)
T PRK11043 44 SASLSLFLAGFALGQLLWGPL----SDRYGR-------KPVLLAGLSLFALGSLGMLWV--------------------- 91 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhhH----HhhcCC-------cHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 455666666667777777665 344332 234566776776666655443
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+.++++...++.|+|.....+...+.+.+..|++.++...+..+...++|..+++.+++.+.+
T Consensus 92 ---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~ 155 (401)
T PRK11043 92 ---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLN 155 (401)
T ss_pred ---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2355666677888998888888888899999999999989888888888888899888877653
No 171
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.52 E-value=0.0033 Score=66.71 Aligned_cols=86 Identities=12% Similarity=0.177 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513 307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 386 (484)
Q Consensus 307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~ 386 (484)
.+-+.+|.++.+++.+.+++... ... .+....+++++|+.+..|...+++.++.|++
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~~---------------------~~~--ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~ 137 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSLL---------------------KPD--LIFIALGTIAVGNGLFKANPASLLSKCYPPK 137 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------------------chh--HHHHHHHHHHhccccccCCHHHHHHHhcCCC
Confidence 35578888888888877765321 011 1334667889999999999999999999887
Q ss_pred --hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 387 --MRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 387 --~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.|+...+++++..++|..+|+.+++++.+
T Consensus 138 ~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~ 168 (489)
T PRK10207 138 DPRLDGAFTLFYMSINIGSLISLSLAPVIAD 168 (489)
T ss_pred chhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999988754
No 172
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=97.48 E-value=0.0046 Score=64.92 Aligned_cols=136 Identities=18% Similarity=0.128 Sum_probs=87.8
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..|+.+++ .+|+++ .+-+.+|+++.+++.+..++..
T Consensus 57 ~~~~s~~~~~~~~~~~~~G~l----~dr~g~-------r~~l~~~~~~~~~~~~~~~~~~-------------------- 105 (455)
T TIGR00892 57 AWISSIMLAVLYAGGPISSIL----VNRFGC-------RPVVIAGGLLASLGMILASFSS-------------------- 105 (455)
T ss_pred HHHHHHHHHHHHHhhHHHHHH----HHHcCc-------hHHHHhhHHHHHHHHHHHHHhh--------------------
Confidence 445555555566667776664 445432 2345667777777766655532
Q ss_pred CccchHHHHHH-HHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIP-QLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~-~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
+.+.+.. ..++.|+++....+.....+.+..| +.|+..+|++.....+|..+++.+++.+.+.. +|
T Consensus 106 ----~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~------gw-- 172 (455)
T TIGR00892 106 ----NVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESF------GW-- 172 (455)
T ss_pred ----hHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------Ch--
Confidence 1222322 3367788888766666777777776 78999999999999999999988887765422 24
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|++.++++++..+..+++
T Consensus 173 --------r~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 173 --------RGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHh
Confidence 456777777766665544433
No 173
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.47 E-value=0.0048 Score=65.66 Aligned_cols=117 Identities=9% Similarity=0.164 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.+|.++.+++....++.. .+.+++....++.++|..+..|....++.++.|++.
T Consensus 89 ~~~~~g~~~~~ig~~l~~~~~-----------------------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~ 145 (500)
T PRK09584 89 RVIMLGAIVLAIGYALVAWSG-----------------------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDD 145 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----------------------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCc
Confidence 446778888887766655431 112234456678899999888988899999987643
Q ss_pred --hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 011513 388 --RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYK 463 (484)
Q Consensus 388 --~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~ 463 (484)
++..+++++...++|..+|+.+++.+.+.. +| ...|.+.++..++..+.+++..+.+++.
T Consensus 146 ~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~------g~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~ 207 (500)
T PRK09584 146 PRLDGAFTMYYMSINIGSFFSMLATPWLAAKY------GW----------SVAFALSVVGMLITVVNFAFCQRWVKQY 207 (500)
T ss_pred hhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh------CH----------HHHHHHHHHHHHHHHHHHHHhHHHhccC
Confidence 445788889999999999999998875421 23 4566666666666666666665555443
No 174
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=97.45 E-value=0.017 Score=58.66 Aligned_cols=87 Identities=16% Similarity=0.246 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.+|+++..+..+...+.+. +... |.. -++.++.-.-+...+=++..+.+|++.
T Consensus 319 ~vl~~~lvi~~~~~~~~~~~~~---------------------~~~f-~i~--gll~g~s~G~~qA~SRSy~~~lvp~~k 374 (438)
T COG2270 319 PVLMIGLVILSIAALYLIFLEG---------------------ELDF-WIL--GLLVGTSLGGAQASSRSYLARLVPKGK 374 (438)
T ss_pred eeehHHHHHHHHHHHHHHHccc---------------------cHHH-HHH--HHHHHHhcchHHHHHHHHHHHhCCCcc
Confidence 4566777766666555544432 2232 322 255666666677778899999999999
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHhHhhccccc
Q 011513 388 RSIGGSLAFVGFAISNYLNGFLISMVHRFTK 418 (484)
Q Consensus 388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~ 418 (484)
.+...|++.++.-.++.+||.+.+++.+.|+
T Consensus 375 ~~~fFglyaltgra~S~~gp~lv~v~t~iTg 405 (438)
T COG2270 375 EGRFFGLYALTGRAASFLGPFLVAVITQITG 405 (438)
T ss_pred ccceeehhhhhhhHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988773
No 175
>PRK10133 L-fucose transporter; Provisional
Probab=97.43 E-value=0.017 Score=60.39 Aligned_cols=113 Identities=12% Similarity=-0.005 Sum_probs=83.6
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+.+|+.+++ .+|++ ..+-+.+|+++.+++.+.......
T Consensus 64 gl~~~~~~~g~~i~~~~~g~l----~dr~G-------~r~~l~~g~~~~~~~~~l~~~~~~------------------- 113 (438)
T PRK10133 64 GLIQSAFYFGYFIIPIPAGIL----MKKLS-------YKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhC-------cHHHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 455666677777878877765 45543 334577788888887766432111
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
..+.+++....++.|+|.....+....++.+..|++.++..++++....++|..+|+.++..+
T Consensus 114 --a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l 176 (438)
T PRK10133 114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134556777889999999999999999999988888887789998998999999998887654
No 176
>TIGR00898 2A0119 cation transport protein.
Probab=97.43 E-value=0.0016 Score=69.17 Aligned_cols=132 Identities=14% Similarity=0.196 Sum_probs=95.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++.+++..+..++..++.+.+ .+|+++ .+-+.++.++.+++.+..++.
T Consensus 130 ~~~~s~~~~g~~~g~~~~g~l----~Dr~Gr-------r~~~~~~~~~~~i~~~~~~~~--------------------- 177 (505)
T TIGR00898 130 DLTQSCFFVGVLLGSFVFGYL----SDRFGR-------KKVLLLSTLVTAVSGVLTAFS--------------------- 177 (505)
T ss_pred HHHHHHHHHHHHHHHHhHHHh----hhhccc-------hHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 566777777788888887775 344332 123556666666666555442
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.+.++++...++.|++.....+....++.+..|++.|+..++++....++|..+++.++..+. +|
T Consensus 178 ---~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~---------~w--- 242 (505)
T TIGR00898 178 ---PNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP---------DW--- 242 (505)
T ss_pred ---ccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh---------HH---
Confidence 245667778899999999999999999999999999999999999999999999888876543 24
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHH
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFL 454 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~ 454 (484)
...|++.++.+++..+.++
T Consensus 243 -------r~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 243 -------RWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 3456666666655555443
No 177
>TIGR00901 2A0125 AmpG-related permease.
Probab=97.41 E-value=0.0062 Score=61.31 Aligned_cols=63 Identities=21% Similarity=0.192 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+.+++...+++.+++-....+...+++.+..|++.|+...|+.....++|..+++.++..+..
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~ 144 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLAS 144 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455566667778888888899999999999999999999999999999999999998877653
No 178
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=97.39 E-value=0.0032 Score=66.93 Aligned_cols=116 Identities=9% Similarity=0.003 Sum_probs=82.6
Q ss_pred ccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 270 SYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 270 ~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
++.+...+..++..++..++ .+|+++ .+-+.+++++.+++.++.++... . .
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l----~d~~Gr-------r~~~~~~~~~~~v~~~~~~~~~~---------~---------~ 110 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWL----ADKLGR-------KRVYGMELIIMIIATVASGLSPG---------S---------S 110 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHhhcc-------HHHHHHHHHHHHHHHHHHHHccC---------c---------c
Confidence 45555566666777766665 344322 22355666666666655544311 0 0
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
...+.++++...++.|+++....+....++.+..|++.||..++++.....+|..+++.+...+.
T Consensus 111 ~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 111 PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11235567788899999999999999999999999999999999999999999999988876543
No 179
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.38 E-value=0.0079 Score=62.97 Aligned_cols=87 Identities=11% Similarity=0.177 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhh--eeeeecccccccch
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVI--VYVQSDVSWAWGLG 110 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~--~~l~~~~g~~~~F~ 110 (484)
..-++.+|+.+.|+..|.......-++.+.-|++- |+ ..=...-.++++|.+++..++ ..+++.-.|.+.+.
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~-RG-----~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~ 188 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNL-RG-----ALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLA 188 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh-cc-----HHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHH
Confidence 45679999999999999999999999999988643 22 222334478888888885554 44556677999999
Q ss_pred hhhHHHHHHHHHHHh
Q 011513 111 IPAFMMFLSCAMFFL 125 (484)
Q Consensus 111 i~~~~~~l~~i~~l~ 125 (484)
.+.+..++.++...+
T Consensus 189 ~~~i~~~~~l~~l~~ 203 (485)
T KOG0569|consen 189 FPLIPALLQLALLPF 203 (485)
T ss_pred HHHHHHHHHHHHHhc
Confidence 888877777766543
No 180
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=97.36 E-value=0.0038 Score=65.64 Aligned_cols=123 Identities=11% Similarity=0.024 Sum_probs=84.1
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..+...+..++.+++.+++ .+|+++ .+-+.++.++.+++.+..++.+...... ..
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l----~dr~Gr-------r~~~~~~~~l~~i~~~~~~~~~~~~~~~--~~---------- 114 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYC----SNRFGR-------RDSLKIAAVLFFISALGSAWPEFGFTSI--GP---------- 114 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhcc-------HHHHHHHHHHHHHHHHHHHhhccccccc--cc----------
Confidence 455566667777777877775 344432 2346667777766666655432100000 00
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+...+++++...++.|++.....|....++.+..|++.||.++|++.....+|..+++.+.....
T Consensus 115 ~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~ 180 (479)
T PRK10077 115 DNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180 (479)
T ss_pred cchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011234456677799999999999999999999999999999999999999999998877765543
No 181
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=97.35 E-value=0.0091 Score=60.24 Aligned_cols=140 Identities=8% Similarity=-0.107 Sum_probs=85.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHH-HHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMA-IGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~-iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
+++.+...+..++..|+.+++. +|++ ..+.+. .+.++.+++.+..+..
T Consensus 36 g~~~~~~~~~~~~~~~~~g~l~----Dr~g-------~r~~~~~~~~~~~~~~~~~~~~~-------------------- 84 (375)
T TIGR00899 36 GLFYTGSAIVGIAVSQLLATRS----DYQG-------DRKGLILFCCLLAALACLLFAWN-------------------- 84 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----hccC-------CchHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4556666667777788877753 3432 223333 3445544444444332
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhH--HhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIG--GSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 425 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~--~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w 425 (484)
.+.++++...++.+.++....|...+...+..|++.|+.. .+......++|..+|+.+++.+.+.. +|
T Consensus 85 ----~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~------~~ 154 (375)
T TIGR00899 85 ----RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGF------GF 154 (375)
T ss_pred ----chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhc------cc
Confidence 2344444455667777777788888888888888777643 57777778889999988887764311 23
Q ss_pred CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
...|++.+.+.++..++..+..+.
T Consensus 155 ----------~~~f~~~~~~~~~~~~~~~~~~~~ 178 (375)
T TIGR00899 155 ----------TVMFLTAALAFVLCGVLVWLFLPS 178 (375)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666666666555554444443
No 182
>PTZ00207 hypothetical protein; Provisional
Probab=97.34 E-value=0.016 Score=62.52 Aligned_cols=119 Identities=8% Similarity=0.071 Sum_probs=85.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
+.+-+.+|.++.+++++..++... + ....+++.+....++.|+|+....+.....+.+..|
T Consensus 90 ~R~vllig~ll~~iG~ll~ala~~---------~---------~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp- 150 (591)
T PTZ00207 90 PRPIFVLSMTVFCLGTLLFALTFQ---------E---------VIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP- 150 (591)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhc---------c---------cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-
Confidence 445577899999999988877421 0 012356667778899999999999988888888887
Q ss_pred hhhhhHHhhHHHHHHHHHHH-HHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513 386 NMRSIGGSLAFVGFAISNYL-NGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 461 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~l-g~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~ 461 (484)
+.||.++|++....++|..+ +++...++.. + ...+|++++++.++..++.+.+.+..+
T Consensus 151 ~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--------~----------~~~~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 151 SNRGAVVAIMKTFTGLGSAILGSIQLAFFSD--------N----------TSAYFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------h----------HHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence 67899999999999999976 4444444321 1 235677778877777766666555544
No 183
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=97.27 E-value=0.011 Score=69.30 Aligned_cols=115 Identities=10% Similarity=-0.056 Sum_probs=82.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+..+++.|+.+++ .+|++ ..+-+.++.++.+++.+...+...
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l----~Dr~g-------rk~~l~~~~~~~~~~~~~~~~~~~------------------- 99 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFL----ADKFS-------KNRVIRIVKLFEVGLTLLIVLAYY------------------- 99 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhh----ccccc-------HHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 455556666677777777775 34432 122344455544444444333211
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
..+.++++...++.|++..+..|...+++.+..|++.|+.++|+.....++|..+|+.+++++..
T Consensus 100 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~ 164 (1146)
T PRK08633 100 --LGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFE 164 (1146)
T ss_pred --HccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12356677788999999999999999999999999999999999999999999999999888754
No 184
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=97.24 E-value=0.011 Score=69.40 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+.++++...+++|+++.+..|...+.+.+..|++.++.++|+.....++|..+|+.+++++..
T Consensus 107 s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~ 169 (1140)
T PRK06814 107 SVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI 169 (1140)
T ss_pred hHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567788888999999999999999999999999999999999999999999999999998764
No 185
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=97.21 E-value=0.025 Score=59.80 Aligned_cols=139 Identities=15% Similarity=0.120 Sum_probs=81.0
Q ss_pred chhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCcc
Q 011513 272 AIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISS 351 (484)
Q Consensus 272 ~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 351 (484)
.+...+..++..++.+++ .+|++ ..+.+.+|.++.+++.+..++..
T Consensus 77 ~~~~~~~~~~~~~~~G~l----~dr~G-------~r~~~~~~~~~~~~~~~~~~~~~----------------------- 122 (476)
T PLN00028 77 GIASVSGSIFSRLAMGPV----CDLYG-------PRYGSAFLLMLTAPAVFCMSLVS----------------------- 122 (476)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhC-------ChHHHHHHHHHHHHHHHHHHHhc-----------------------
Confidence 334444445555665554 34543 12345567777776666555431
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc---CCCCCCCCCc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK---GASTGDWLPE 428 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~---~~~~~~w~~~ 428 (484)
+.+.+....++.|+++.... .....+.+..|++.||..+|+++....+|..+++.+.+.+...-. ..+..+|
T Consensus 123 -s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gW--- 197 (476)
T PLN00028 123 -SATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAW--- 197 (476)
T ss_pred -CHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhh---
Confidence 23344456788899987544 345678899999999999999987777777776665544422100 0000123
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
...|++.++++++..++..++
T Consensus 198 -------r~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 198 -------RIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH
Confidence 346666777766655544433
No 186
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=97.15 E-value=0.015 Score=59.77 Aligned_cols=84 Identities=12% Similarity=0.095 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhh
Q 011513 310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRS 389 (484)
Q Consensus 310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g 389 (484)
+.++.++.++++...++.+. ..+.+++...+++.+.......|...+++.+..|++.|+
T Consensus 71 l~~~~~~~~l~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~ 129 (402)
T PRK11902 71 LLLTQVGLAASIAAMAFCPP---------------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERG 129 (402)
T ss_pred HHHHHHHHHHHHHHHHhcCc---------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhh
Confidence 56667777777766555321 134555666667788888899999999999999999999
Q ss_pred hHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 390 IGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 390 ~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++.....++|..+++.+...+.
T Consensus 130 ~~~~~~~~g~~~g~i~g~~l~~~l~ 154 (402)
T PRK11902 130 AGAAVKVLGYRLAMLVSGGLALWLA 154 (402)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999989999999988877664
No 187
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=97.15 E-value=0.074 Score=55.54 Aligned_cols=84 Identities=7% Similarity=-0.016 Sum_probs=66.9
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch-
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG- 110 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~- 110 (484)
.+...+.+.+++.|+++|..- .....+..++|++ | |.++.+++-.+.++|.++++++++++. ++||+.-+-
T Consensus 113 ~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~k---E---R~ratsi~~sg~~vG~~Ia~~L~qll~-s~gWr~y~~L 184 (511)
T TIGR00806 113 TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPS---R---YQRAAAYSRAAVLLGVFLSSVLGQLLV-TLGWISYSTL 184 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCchhHHHH
Confidence 357789999999999999999 9999999999963 2 467888889999999999999999954 578875443
Q ss_pred --hhhHHHHHHHHHH
Q 011513 111 --IPAFMMFLSCAMF 123 (484)
Q Consensus 111 --i~~~~~~l~~i~~ 123 (484)
|+...+.+++++-
T Consensus 185 n~Isl~s~~~a~~~a 199 (511)
T TIGR00806 185 NIISLVFMTFSVFLA 199 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 5555555555543
No 188
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.09 E-value=0.075 Score=56.72 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=69.1
Q ss_pred chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccch
Q 011513 31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLG 110 (484)
Q Consensus 31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~ 110 (484)
..+...+.+.+++.|++.++...+...+++|.+.++. |..+-++ +.....|+.+++.+++++.. +|++.++
T Consensus 168 a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~ 238 (521)
T KOG0255|consen 168 APNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFW 238 (521)
T ss_pred hCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHH
Confidence 4567889999999999999999999999999998642 3456666 78888888999999888877 8999999
Q ss_pred hhhHHHHHHHHH
Q 011513 111 IPAFMMFLSCAM 122 (484)
Q Consensus 111 i~~~~~~l~~i~ 122 (484)
+..+..++.++.
T Consensus 239 ~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 239 IISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHH
Confidence 888777776655
No 189
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.07 E-value=0.0046 Score=64.71 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhh
Q 011513 309 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR 388 (484)
Q Consensus 309 ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~ 388 (484)
-+.+|++.-.+++.+.++.... |+.....+....-.++.|...+++.++++++.+
T Consensus 310 ~i~lGl~~~~~~~~~~af~~~~-------------------------w~~~~~~v~~~~~~~~~pa~~s~~s~~v~~~e~ 364 (463)
T KOG2816|consen 310 LISLGLLSEFLQLLLFAFATET-------------------------WMMFAAGVVVALAGIVFPAIRAFASILVSPEEQ 364 (463)
T ss_pred HhhHHHHHHHHHHHHHHHhccc-------------------------hhhhHHHHHHHhhcchhHHHHhHHHhhcccccc
Confidence 4678999999999998886431 554455666667778899999999999999999
Q ss_pred hhHHhhHHHHHHHHHHHHHHHhHhhcccc
Q 011513 389 SIGGSLAFVGFAISNYLNGFLISMVHRFT 417 (484)
Q Consensus 389 g~~~gl~~l~~~iG~~lg~~l~~~~~~~~ 417 (484)
|..+++.....++.+.+++.+-+.+...+
T Consensus 365 g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 365 GKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred cchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999999999999999999988876655
No 190
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=97.07 E-value=0.00055 Score=58.05 Aligned_cols=86 Identities=12% Similarity=0.078 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++...+.+++.+...|...+...|.+++++ +.+..++.+...++|..+++.+.+++.+..+|++.|.+.
T Consensus 50 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 123 (141)
T TIGR00880 50 NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFL 123 (141)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHH
Confidence 35567778889999999999999999999998642 356888899999999999999999998888999999888
Q ss_pred hHHHHHHHHHHH
Q 011513 113 AFMMFLSCAMFF 124 (484)
Q Consensus 113 ~~~~~l~~i~~l 124 (484)
++..+++.+...
T Consensus 124 ~~~~~~~~~~~~ 135 (141)
T TIGR00880 124 AILALAAFILLA 135 (141)
T ss_pred HHHHHHHHHHHh
Confidence 877777665544
No 191
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=97.01 E-value=0.038 Score=57.48 Aligned_cols=91 Identities=12% Similarity=0.162 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.+++++.+++.+..++...+- . ....+..+++...+++|+|+....|....++.+..|++.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~~~-----~-----------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~ 157 (432)
T PRK10406 94 KSMLISVCMMCFGSLVIACLPGYE-----T-----------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR 157 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCch-----h-----------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc
Confidence 446778888877777766543210 0 001234567778899999999999999999999999999
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 388 RSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
||.+++++......|..+++.+...+.
T Consensus 158 rg~~~~~~~~~~~~G~~~~~~~~~~~~ 184 (432)
T PRK10406 158 KGFYASFQYVTLIGGQLLALLVVVVLQ 184 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888888877655443
No 192
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.00 E-value=0.014 Score=61.35 Aligned_cols=116 Identities=15% Similarity=0.196 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
..+.+..+.++.+++-+...+... .+.+.++...+++|++|....|.......+-+|+
T Consensus 102 ~r~v~~~~~~~sa~~t~l~P~aa~----------------------~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~ 159 (466)
T KOG2532|consen 102 ARRVFFISGLISALLTLLTPLAAS----------------------IGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP 159 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH----------------------hcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence 445678888888887777766543 3344567788999999999999999999999999
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
..|++..++......+|..++-.+++.+-+.. .+| ..-|.+.|+++++-.+++..+.+
T Consensus 160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW----------~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 160 NERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGW----------PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCC----------chHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999887877765431 367 34566677777777776665544
No 193
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=96.95 E-value=0.01 Score=61.50 Aligned_cols=121 Identities=14% Similarity=0.080 Sum_probs=78.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.+.++..+.-.+..|+.+.+.+..-+|.++| ..-+.+|.++.+++++....... ..
T Consensus 38 g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grr------r~~i~~~~~~~~i~~~~~~~~~~--------~~--------- 94 (437)
T TIGR00792 38 GTLFLVARILDAITDPIMGNIVDRTRTRWGKF------RPWLLIGAIPFSIVLVLLFTTPD--------FS--------- 94 (437)
T ss_pred HHHHHHHHHHHHhccchheEeeecCCCCCCCc------chhHHHhHHHHHHHHHHHHhCCC--------CC---------
Confidence 44555556666777777777644222121111 11256677777777666544311 00
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
.....+|....+++.+++..+..+...+...+.. |++.|+...+.......+|..+++.+...+
T Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l 159 (437)
T TIGR00792 95 -ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPL 159 (437)
T ss_pred -cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1133667778888889988888888788888876 578899999998888888888877665444
No 194
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=96.93 E-value=0.027 Score=56.64 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=78.5
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.++..+++.+...+..|+.+++ .+|+++ .+.+.+|.++.+++.+.. ..
T Consensus 37 ~g~~~s~~~~~~~~~~~~~g~l----~dr~g~-------r~~~~~~~~~~~~~~~~~-~~-------------------- 84 (355)
T TIGR00896 37 AGLLTALPVLCFAVLAPLAPWL----ARRFGE-------ERSVAAGLLLIAAGILIR-SA-------------------- 84 (355)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH----HHHhCc-------hHHHHHHHHHHHHHHHHH-Hh--------------------
Confidence 3566778888888888888875 345432 234666776666655443 11
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.++++...++.++|..+..+.....+.+..| +.|+..+|++....++|..+++.+++.+.
T Consensus 85 ----~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~ 146 (355)
T TIGR00896 85 ----PGTALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLA 146 (355)
T ss_pred ----ccHHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123455566788999998888777778888776 57999999999999999999988877654
No 195
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=96.92 E-value=0.012 Score=62.44 Aligned_cols=90 Identities=17% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.+++++.+++.+..++...+-. -| ...+++++...++.|+|+....+....++.+..|++.
T Consensus 88 ~~l~~~~~l~~i~~~~~a~~~~~~~-----~g-----------~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~ 151 (490)
T PRK10642 88 KILAITIVIMSISTFCIGLIPSYAT-----IG-----------IWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK 151 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHH-----HH-----------HHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC
Confidence 4577888888888888777543100 00 1122346778899999999999999999999999999
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 388 RSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 388 ~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
||.+++++.....+|..+|+.+...+
T Consensus 152 Rg~~~~~~~~~~~~G~~lg~~~~~~~ 177 (490)
T PRK10642 152 RGFMGSWLDFGSIAGFVLGAGVVVLI 177 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888887766544
No 196
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=96.91 E-value=0.022 Score=60.76 Aligned_cols=118 Identities=15% Similarity=0.166 Sum_probs=86.0
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+.++....+-.+++.|+.+.+. +|+.+| +-+..+-++.++..+..++... .
T Consensus 47 valv~~a~~LP~~Llsl~aG~la----Dr~drr-------rili~~~~~~~~~~~~L~~l~~--------~--------- 98 (524)
T PF05977_consen 47 VALVQAASTLPILLLSLFAGALA----DRFDRR-------RILILSQLLRALVALLLAVLAF--------F--------- 98 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hcccch-------HHHHHHHHHHHHHHHHHHHHHH--------h---------
Confidence 46677888888889988888764 343221 2233444444444444333322 1
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
...++|.++...++.|++..+..|.-.+.+-+++|++.-....++.....+++..+||.+++.+..
T Consensus 99 --~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva 164 (524)
T PF05977_consen 99 --GLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVA 164 (524)
T ss_pred --CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 136677777777999999999999999999999999999999999999999999999999887653
No 197
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=96.89 E-value=0.047 Score=57.77 Aligned_cols=115 Identities=14% Similarity=0.163 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch-
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN- 386 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~- 386 (484)
+-+.+|.++.+++.++.+..+ .+..++.....+..+|..+..+...+++.++.|++
T Consensus 77 r~iliG~il~~lg~lll~~~~-----------------------~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~ 133 (493)
T PRK15462 77 MAVMLGALLMAIGHVVLGASE-----------------------IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTD 133 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHhh-----------------------cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCC
Confidence 346788888888776544321 01111222334455666666677778889988875
Q ss_pred -hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513 387 -MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 461 (484)
Q Consensus 387 -~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~ 461 (484)
.|+...++.+...++|..+++.+.+.+.+.. +| ...|.+.++.++++.+.+++..|++.
T Consensus 134 ~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~------Gw----------~~~F~iaaigm~l~li~~~~~~~~l~ 193 (493)
T PRK15462 134 PRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY------SW----------AMGFGLAAVGMIAGLVIFLCGNRHFT 193 (493)
T ss_pred ccccceehHHHHHHHHHHHHHHHHHHHHHhhh------Ch----------HHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 7888999999999999999999998875321 23 34566656555666666655444443
No 198
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=96.81 E-value=0.24 Score=52.83 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i 111 (484)
+...+++|+++.++|.|+..-.+.-+++|.-|.+. |...-+.+.+++++|.+++..+....++. ++|+..+++
T Consensus 141 ~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~ 214 (513)
T KOG0254|consen 141 SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGL 214 (513)
T ss_pred hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHH
Confidence 67899999999999999999888888888876532 34566778899999999996665555543 589977776
Q ss_pred hhHHHHHHHHH
Q 011513 112 PAFMMFLSCAM 122 (484)
Q Consensus 112 ~~~~~~l~~i~ 122 (484)
..+.-++..+.
T Consensus 215 ~~i~~~~~~~~ 225 (513)
T KOG0254|consen 215 ALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHH
Confidence 66555544444
No 199
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=96.81 E-value=0.016 Score=58.41 Aligned_cols=91 Identities=15% Similarity=0.230 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.+|.++.+++.+..++....- . ......++++...++.|++.....+....++.+..|++.
T Consensus 66 ~~l~~~~~~~~~~~~~~~~~~~~~-------~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~ 129 (394)
T TIGR00883 66 KTLVITLLMMGIGTLLIGLLPSYA-------T---------IGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGK 129 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhCCChh-------h---------hHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCccc
Confidence 346677887777777666543210 0 001122345667789999999999999999999999999
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 388 RSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 388 ~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
|+.+++.+.....+|..+++.+...+.
T Consensus 130 r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 130 RGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988876654
No 200
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.74 Score=48.04 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=90.9
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
-.+..++.+.+-+..-+.+-.+-++-||.++ +....-+.+|.++.-++++..... . ..+......++...
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~----fg~~~~~~~~~~~~~~~~~li~l~-~-----p~dap~~~t~~~~~ 347 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRG----FGRKPTVLIGIIIHLIGFLLIHLS-F-----PNDAPLRPTDSPPL 347 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhh----cccCcchhHHHHHHHHHHHHHhcc-c-----cccCCCCCCccccc
Confidence 3445566666655555544444444444432 223333566666665555543221 1 00100000011111
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
.-.-+.......+++.|+|+......-+.++.... ++-|..+-++.-+..++++.++.......
T Consensus 348 ~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~--------------- 411 (461)
T KOG3098|consen 348 LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL--------------- 411 (461)
T ss_pred ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh---------------
Confidence 11122223334568999999999999999999999 55566788888888888887654443221
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 461 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~ 461 (484)
....+.....+++.+...++..++++.+
T Consensus 412 -----~l~~~~l~~~i~~~i~~~~~~~~~~~~~ 439 (461)
T KOG3098|consen 412 -----LLYIYTLGLPIFCVIATTIFFIVAERTQ 439 (461)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223455666777777888888887774
No 201
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.69 E-value=0.04 Score=57.55 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=90.0
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
-++..+..++.-.+..|+++++ +. |+ .+..+=+.+|.+++++|-+++..++..
T Consensus 73 fG~viaa~slg~~i~~liF~~W-----s~--k~---~~~k~Pli~s~ii~~~g~llY~~l~~~----------------- 125 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIW-----SN--KT---GSVKKPLIVSFLIAIIGNLLYLALAYV----------------- 125 (488)
T ss_pred hhHHHHHHHHHHHhcchhhccc-----cc--cc---CCcccCHHHHHHHHHHHHHHHHHHHhc-----------------
Confidence 3566777888899999988873 33 11 122222778999999999998776652
Q ss_pred CCccchHHHHHHHHHHHHhH-HHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFS-EAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWL 426 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~ig-E~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~ 426 (484)
..-+.|++...+++.|+| -.+..--.+.-..+-.+.+.|+ ++.......+|..+||.+...+.... ..+-.|+
T Consensus 126 --~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA--~a~~~~~~vlg~ilGp~~q~~f~~Lg--~~G~~i~ 199 (488)
T KOG2325|consen 126 --PNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRA--FAATSGGFVLGIILGPTIQLAFTPLG--EKGFMIL 199 (488)
T ss_pred --ccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHH--HHHhhhHHHHHHHHhHHHHHHHhhhc--CCceEEc
Confidence 112678888999999999 4444444343333345555554 44444555555555555554443221 1112344
Q ss_pred C-cCccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 427 P-EDLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 427 ~-~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
+ -.+|..... =|+.+++.++..++..+..|-
T Consensus 200 ~~~~~n~YTap--~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 200 PGLIFNMYTAP--AWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred CcceEEecchH--HHHHHHHHHHHHHHHHhheee
Confidence 4 345543222 234555666665555544433
No 202
>PRK15011 sugar efflux transporter B; Provisional
Probab=96.59 E-value=0.21 Score=51.14 Aligned_cols=89 Identities=8% Similarity=-0.102 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhh--hhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCcc
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMR--SIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 431 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~--g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln 431 (484)
.+++.....+.+..+....|...+.+.+..|++-| +.+.+......++|..+|+.+++.+.+.. +|
T Consensus 105 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~------gw------ 172 (393)
T PRK15011 105 YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGF------SF------ 172 (393)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhc------Ch------
Confidence 33433333444444556778888888877766544 45668888888999999999998875321 34
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 432 KGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 432 ~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
...|++.++++++..+...+..|
T Consensus 173 ----~~~f~~~~~~~~~~~~~~~~~~~ 195 (393)
T PRK15011 173 ----TVMYLSAAVAFIVCGVMVWLFLP 195 (393)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhcC
Confidence 34666667666666555444333
No 203
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.59 E-value=0.021 Score=62.28 Aligned_cols=172 Identities=10% Similarity=0.024 Sum_probs=104.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHH----hhhhhc-----cCC-----------Cc--ccc---cCC--CCccchHH-HH
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDK----RRSLAL-----SRP-----------VG--LEQ---RRG--AISSLSGL-WL 357 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~----~~~~~~-----~~g-----------~~--~~~---~~~--~~~~~s~~-~l 357 (484)
.++-+++|+++++++.++.++.+.. +++... +.. .+ +.. +.. ......+| .+
T Consensus 161 rPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf 240 (735)
T KOG3626|consen 161 RPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF 240 (735)
T ss_pred ccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH
Confidence 4567999999999999998876432 111111 000 00 000 010 11222233 34
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHH
Q 011513 358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDY 437 (484)
Q Consensus 358 i~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~ 437 (484)
+..-++.|+|+--..+.|.+++.+.+-++...+|.|+.+....+|-++|-+++++..+.-.--+ .+-..-+.+|.+---
T Consensus 241 f~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~it~~DPrWIG 319 (735)
T KOG3626|consen 241 FLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIGITPTDPRWIG 319 (735)
T ss_pred HHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCCCCCCCcchhh
Confidence 5566999999999999999999999999999999999999888887777777766543210000 000111122222212
Q ss_pred ----HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccccC
Q 011513 438 ----FYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEKLN 478 (484)
Q Consensus 438 ----~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (484)
-|++.+++.++..+-++++-|.+++..++.++++.+..|.|
T Consensus 320 AWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~k~~ 364 (735)
T KOG3626|consen 320 AWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVLKTE 364 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhcccccc
Confidence 34567778888888888888887765544444444444444
No 204
>PTZ00207 hypothetical protein; Provisional
Probab=96.46 E-value=1.6 Score=47.35 Aligned_cols=82 Identities=10% Similarity=-0.045 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHH-Hhhhheeeeecccccccch
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMI-SLTVIVYVQSDVSWAWGLG 110 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i-~~~l~~~l~~~~g~~~~F~ 110 (484)
.+.+.+++.+.+.++|.+.+.+.....+.++||++ |..+.++...+.++|+++ +++..+++.+ +|+..|+
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~-------RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~--~~~~~fl 188 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSN-------RGAVVAIMKTFTGLGSAILGSIQLAFFSD--NTSAYFF 188 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHH
Confidence 35778899999999999999998899999999742 256888999999999975 5555566543 5666666
Q ss_pred hhhHHHHHHHHH
Q 011513 111 IPAFMMFLSCAM 122 (484)
Q Consensus 111 i~~~~~~l~~i~ 122 (484)
+.++..++..++
T Consensus 189 ~l~vl~~vv~ll 200 (591)
T PTZ00207 189 FLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHH
Confidence 666555554444
No 205
>PRK09952 shikimate transporter; Provisional
Probab=96.40 E-value=0.055 Score=56.44 Aligned_cols=111 Identities=14% Similarity=0.171 Sum_probs=75.6
Q ss_pred HHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHH
Q 011513 281 IWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQ 360 (484)
Q Consensus 281 i~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~ 360 (484)
+..|+.+.+.-++.+|++ ..+-+.+++++.+++.+..++...+-. ....+.+.++..
T Consensus 75 ~~~~~g~~~~G~l~Dr~G-------rr~~l~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l~~~ 131 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLG-------RKRMLMLTVWMMGIATALIGLLPSFST----------------IGWWAPVLLVTL 131 (438)
T ss_pred HHHhhHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHHHhcCCcHHH----------------HHHHHHHHHHHH
Confidence 334444444333455543 234466778777777777666432100 000122245667
Q ss_pred HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 361 ~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.++.|+++....|....++.+..|++.||.+++......++|..++..+...+.
T Consensus 132 R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 132 RAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999998877765543
No 206
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=96.39 E-value=0.65 Score=48.73 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=57.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
+.+-+.+++++.++..+..++... + ...|.+.+....++.|++ ....+.....+.+..|+
T Consensus 99 ~R~v~~~~~ll~~i~~~~~~~a~~--------~-----------~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~ 158 (462)
T PRK15034 99 GRRWTVFSTAILIIPCVWLGIAVQ--------N-----------PNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPK 158 (462)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHc--------c-----------cCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCH
Confidence 334566777777777776665311 0 113566677788999998 55778899999999999
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHH
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFL 409 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l 409 (484)
+.||+++|++.-..++|..++..+
T Consensus 159 ~~rG~A~Gi~~g~G~~G~~l~~~l 182 (462)
T PRK15034 159 AKQGSALGINGGLGNLGVSVMQLV 182 (462)
T ss_pred hHhHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999854344444443333
No 207
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=96.36 E-value=0.087 Score=53.73 Aligned_cols=61 Identities=5% Similarity=-0.122 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+.|+++..+++.+.+.....|...+++.+ +++.|+...|......++|..+++.+++.+.+
T Consensus 93 ~~~~l~~~~~l~~~~~~~~~p~~~al~~~--~~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~ 153 (382)
T TIGR00902 93 NAWLLFIAIGLFALFFSAGMPIGDALANT--WQKQFGLDYGKVRLIGSAAFIIGSALFGGLIG 153 (382)
T ss_pred hHHHHHHHHHHHHHHHccchhHHHHHHHH--HHHHcCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777887777777887777654 45778999999999999999999998888764
No 208
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.34 E-value=0.03 Score=57.02 Aligned_cols=127 Identities=17% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch--
Q 011513 309 RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN-- 386 (484)
Q Consensus 309 ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~-- 386 (484)
-+.+|.++..+|.+++.+...- ... ....+...+.....++++|..+.-|....+..+|-+++
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~-----~~~----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~ 67 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIP-----PSL----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDD 67 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTS-----SSC----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTT
T ss_pred hhhHHHHHHHHHHHHhHHHHhc-----chh----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccch
Confidence 3678888888888886665320 000 01233445566778899999999999999999999887
Q ss_pred -hhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCC
Q 011513 387 -MRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGS 465 (484)
Q Consensus 387 -~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~ 465 (484)
.|......++...++|..++..+.+.+.+.. + ....|.+.++.++++.++|+.-.++|+++..
T Consensus 68 ~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~------~----------~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~ 131 (372)
T PF00854_consen 68 SRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY------G----------WFLGFGIPAIGMLLALIVFLSGRKRYRKVAP 131 (372)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-----------------HHHHHHHHHHHHHHHHHHHHCCCCTT--S--
T ss_pred hhhhhhHHHHHHHHhhhhHhhcccchhhcccc------c----------hhhhhhHHHHHHHHHHHHHHhCCcCCcCcCc
Confidence 4555666778889999999988877765311 2 3567888888889999999888888887743
Q ss_pred C
Q 011513 466 G 466 (484)
Q Consensus 466 ~ 466 (484)
.
T Consensus 132 ~ 132 (372)
T PF00854_consen 132 P 132 (372)
T ss_dssp -
T ss_pred c
Confidence 3
No 209
>PRK15075 citrate-proton symporter; Provisional
Probab=96.34 E-value=0.2 Score=52.05 Aligned_cols=90 Identities=9% Similarity=0.081 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 308 QRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 308 ~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+-+.++.++.+++.+..++...+.. .......+++...++.|+++....+....++.+..|++.
T Consensus 87 ~~l~~~~~~~~~~~~l~~~~~~~~~----------------~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~ 150 (434)
T PRK15075 87 KGLIVTLSIMASGTLLIAFVPGYAT----------------IGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR 150 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHH----------------HHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc
Confidence 4467777777777777665432100 000011234556789999999888888899999999999
Q ss_pred hhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 388 RSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 388 ~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
|+.+++++.....+|..+++.++..+
T Consensus 151 rg~~~~~~~~~~~~g~~~g~~~g~~l 176 (434)
T PRK15075 151 KGFYTSWQSASQQVAVVFAALLGYLL 176 (434)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888778777777776654
No 210
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.085 Score=55.38 Aligned_cols=58 Identities=22% Similarity=0.209 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLI 410 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~ 410 (484)
+...++...++.|+...+......-++...+|++.||.+..+..+...+|..++..++
T Consensus 115 ~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 115 SFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 4456778999999999999999999999999999999999998999999999887665
No 211
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.23 E-value=0.00093 Score=71.46 Aligned_cols=182 Identities=12% Similarity=-0.019 Sum_probs=3.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH----hhhhhcc-----CC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDK----RRSLALS-----RP 339 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~----~~~~~~~-----~g 339 (484)
+++.+.+=+..+++..++.. +++| -..++-+++|.+++++|.++.++-+.. ....... +.
T Consensus 41 G~i~s~~di~~~~~~~~vsy--------~g~~---~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 41 GLISSSYDIGSLVVVLFVSY--------FGGR---GHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH--------Hhhh---cCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 34445554555555444333 2332 234677999999999999998875431 1111100 00
Q ss_pred C--cc-----------ccc----CCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHH
Q 011513 340 V--GL-----------EQR----RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAIS 402 (484)
Q Consensus 340 ~--~~-----------~~~----~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG 402 (484)
. -+ .++ .+.....-.++++..-++.|+|..-..+.+.+++.+.++++..+.|.|+++....+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 0 01 000 011222234556677799999999999999999999999999999999999999888
Q ss_pred HHHHHHHhHhhcc----cccCCCCCCCCCcCccCchhHHH----HHHHHHHHHHHHHHHHHhhhccccc
Q 011513 403 NYLNGFLISMVHR----FTKGASTGDWLPEDLNKGRLDYF----YYLVAALGLLNFGFFLLCAKWYKYK 463 (484)
Q Consensus 403 ~~lg~~l~~~~~~----~~~~~~~~~w~~~~ln~~~~~~~----f~~la~l~~~~~i~~~~~~~~~~~~ 463 (484)
-.+|-++++...+ ....+ .++ ..-+.++.+---. |.+.+.+.++..+-+..+-|+..+.
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~-~~~-~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVP-PDG-VGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGT 256 (539)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCcccc-ccC-CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCc
Confidence 8877666655432 21100 000 0000111111112 3356666666666666666666555
No 212
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=96.19 E-value=0.0028 Score=65.74 Aligned_cols=86 Identities=10% Similarity=0.079 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHH-HhhhHHHHHHhhhheeeeec------cccc
Q 011513 34 LAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSD------VSWA 106 (484)
Q Consensus 34 ~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~l~~~l~~~------~g~~ 106 (484)
...+++...+.+++.+...|+...++.|++++++ +.+++++.+ ...++|.++||.++|++.++ +||+
T Consensus 308 ~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 308 YALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 4567778889999999999999999999998532 467888886 56789999999999999886 4699
Q ss_pred ccchhhhHHHHHHHHHHHh
Q 011513 107 WGLGIPAFMMFLSCAMFFL 125 (484)
Q Consensus 107 ~~F~i~~~~~~l~~i~~l~ 125 (484)
.+|.++++..++..+++++
T Consensus 382 ~~f~~~~~~~~i~~~l~~~ 400 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMI 400 (418)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999888877777666544
No 213
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=96.16 E-value=0.65 Score=47.34 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=52.4
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
....|++.|+|--......++++.|.+|++.|+...++.+...-+|..++..+.+..-
T Consensus 92 a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL 149 (403)
T PF03209_consen 92 AALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLL 149 (403)
T ss_pred HHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4468899999999999999999999999999999999999999999999888877653
No 214
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=96.14 E-value=0.033 Score=55.33 Aligned_cols=62 Identities=6% Similarity=-0.070 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
|..+.+..+++.+.|-.+..+..+.++.+..|++.++..+++.....++|..+||.+++.+.
T Consensus 9 ~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i 70 (310)
T TIGR01272 9 YYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLI 70 (310)
T ss_pred HHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 56678889999999999999999999999999999999999999999999999999998765
No 215
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=96.09 E-value=0.035 Score=57.92 Aligned_cols=71 Identities=8% Similarity=0.108 Sum_probs=56.1
Q ss_pred CCCCccchHHHHHHH-HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccc
Q 011513 346 RGAISSLSGLWLIPQ-LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRF 416 (484)
Q Consensus 346 ~~~~~~~s~~~li~~-~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~ 416 (484)
++....++.+.+... .++.|++--+++....+..+++.-+..+|+++|++.+...++..+++.+.......
T Consensus 379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~ 450 (488)
T KOG2325|consen 379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTL 450 (488)
T ss_pred hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHh
Confidence 333344444433333 46788888899999999999999999999999999999999999999998776543
No 216
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=96.02 E-value=0.19 Score=51.17 Aligned_cols=61 Identities=8% Similarity=-0.095 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+.|.+....++.+++.....|...+.+.+. ++.|+..+|......++|..+|+.+++++.+
T Consensus 93 ~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~ 153 (382)
T PRK11128 93 SFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVS 153 (382)
T ss_pred cHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 355555566778888877778766666655 3446677777777788999999999888753
No 217
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=96.01 E-value=0.19 Score=51.46 Aligned_cols=116 Identities=13% Similarity=-0.048 Sum_probs=66.3
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
++..++..+...+..|+.+++. +|.++| +.+..+++..++++......... .
T Consensus 41 g~~~~~~~l~~~i~~~~~G~l~----Dr~grr-------~~~~~~~~~~~~~~~~~~~~~~~--------~--------- 92 (396)
T TIGR00882 41 GIVFSCISLFSILFQPLFGLIS----DKLGLK-------KHLLWIISGLLVLFAPFFIYVFG--------P--------- 92 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhCcH-------HHHHHHHHHHHHHHHHHHHHHhh--------h---------
Confidence 5667788888899999988864 443221 22333333333332221111000 0
Q ss_pred CccchHH-HHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGL-WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~-~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
......+ ......++.+++.....+...+++.+..++ ++...|......++|..+|+.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~g~~~g~~~~g~l~ 157 (396)
T TIGR00882 93 LLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSRN--SNFEYGKARMFGCVGWALCASIAGILF 157 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhh--cccccchhhhhcccHHHHHHHHHhhhh
Confidence 0001122 234456777888887788887777765543 344566666777888888888887764
No 218
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=95.94 E-value=0.0017 Score=69.52 Aligned_cols=92 Identities=16% Similarity=0.253 Sum_probs=2.9
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec----------
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD---------- 102 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~---------- 102 (484)
-...|++|-++.|+|...+.+.-.+++-|-.++++ ..-.+.++|.+..+|.++|.++++..-+.
T Consensus 140 ~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~ 213 (539)
T PF03137_consen 140 YFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPD 213 (539)
T ss_dssp ------------SSS-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhccccCCccceeeeecccccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCcccccc
Confidence 46889999999999999988877777776665432 24688899999999999999988765321
Q ss_pred -----------cc-ccccchhhhHHHHHHHHHHHhcccee
Q 011513 103 -----------VS-WAWGLGIPAFMMFLSCAMFFLGSRLY 130 (484)
Q Consensus 103 -----------~g-~~~~F~i~~~~~~l~~i~~l~~~~~~ 130 (484)
.| |+++|++.++..++..+.++..-|+.
T Consensus 214 ~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~l 253 (539)
T PF03137_consen 214 GVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKL 253 (539)
T ss_dssp ----------------------------------------
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccC
Confidence 23 99999999999988887776654544
No 219
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=95.87 E-value=0.11 Score=53.59 Aligned_cols=96 Identities=16% Similarity=0.124 Sum_probs=66.1
Q ss_pred CCCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--
Q 011513 25 ACPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-- 102 (484)
Q Consensus 25 ~~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-- 102 (484)
.|.++...-...+..-+.++++|.|+=.|+..+...+.-.+. +|-......|...=+++-.|+.++.++.+.....
T Consensus 135 ~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~--~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~ 212 (538)
T KOG0252|consen 135 VGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKK--TRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFN 212 (538)
T ss_pred CCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhc--cccceeEEEEEecchhHhhccHHHHHHHHHHhccCC
Confidence 445555567788999999999999999999888888775542 1222345567777788888888887777665432
Q ss_pred ---------ccccccchhhhHHHHHHHHHHHh
Q 011513 103 ---------VSWAWGLGIPAFMMFLSCAMFFL 125 (484)
Q Consensus 103 ---------~g~~~~F~i~~~~~~l~~i~~l~ 125 (484)
.=||..|.+ +.+.+++++.+
T Consensus 213 ~~~~~~~ld~vWRl~~gl---g~vpa~~~ly~ 241 (538)
T KOG0252|consen 213 GPSTYPHLDGVWRIIFGL---GAVPALLVLYF 241 (538)
T ss_pred CCCCchHHHHHHHHHHHH---HHHHHHHHHHh
Confidence 338877754 44455555443
No 220
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=95.85 E-value=0.42 Score=48.72 Aligned_cols=85 Identities=18% Similarity=0.162 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCch
Q 011513 355 LWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGR 434 (484)
Q Consensus 355 ~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~ 434 (484)
+|+.....+.++......+....+..+..+++.++.+.+.......+|..+|+.+.+.+.+.. +|
T Consensus 98 ~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~------gw--------- 162 (390)
T TIGR02718 98 GWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF------GQ--------- 162 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CH---------
Confidence 354444455556666666777778888888888888888887777888888887766554321 23
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 011513 435 LDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 435 ~~~~f~~la~l~~~~~i~~~~ 455 (484)
...|++.+++.++..+..++
T Consensus 163 -~~~f~~~a~l~~~~~~~~~~ 182 (390)
T TIGR02718 163 -RPAFLLVACVPLASLVCVLW 182 (390)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 34667777777665555433
No 221
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.84 E-value=0.26 Score=50.62 Aligned_cols=61 Identities=10% Similarity=0.000 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 101 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~ 101 (484)
.+...|=.+.+...-.+.-.-+-+-+-+|++++ |..+-.+-.++.-+|.++|.++.+.+..
T Consensus 141 ~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 141 PLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred hhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecC
Confidence 466777777788777777766777788888642 3556666667777777777777666643
No 222
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=95.77 E-value=0.19 Score=53.54 Aligned_cols=106 Identities=17% Similarity=0.129 Sum_probs=84.6
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+...+..++.+++. +++++ .+-+.++.++..++.++.++.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~----d~~GR-------k~~l~~~~~~~~iG~ii~~~a--------------------- 139 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLG----DRIGR-------KKTLLLAVVLFLIGAIIIALA--------------------- 139 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhhh-------HHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 5777777787888888777754 33321 234667777777777776664
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 409 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l 409 (484)
.++++++...++.|+|-.+.+....-++.+.+|++.||.+.++..+...+|..++-.+
T Consensus 140 ---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~ 197 (513)
T KOG0254|consen 140 ---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCI 197 (513)
T ss_pred ---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2577888999999999999999999999999999999999999999999988888333
No 223
>PRK09528 lacY galactoside permease; Reviewed
Probab=95.65 E-value=0.3 Score=50.45 Aligned_cols=29 Identities=10% Similarity=-0.002 Sum_probs=22.5
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 387 MRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+|..+|......++|..+++.+++.+.+
T Consensus 138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~ 166 (420)
T PRK09528 138 RSGFEYGRARMWGSLGWALCAFIAGILFN 166 (420)
T ss_pred hccccchhhHHhhhHHHHHHHHHHHHHHh
Confidence 45677788777788899999888887653
No 224
>PRK11462 putative transporter; Provisional
Probab=95.64 E-value=0.39 Score=50.53 Aligned_cols=59 Identities=14% Similarity=-0.018 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccC-chhhhhHHhhHHHHHHHHHHHHHHHhHh
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISM 412 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP-~~~~g~~~gl~~l~~~iG~~lg~~l~~~ 412 (484)
..|....|++..++--+....-.++....++ ++.|+..++.......+|..+++.+...
T Consensus 109 ~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~p 168 (460)
T PRK11462 109 MIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMP 168 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999988 8999999999998888888877766533
No 225
>PF13347 MFS_2: MFS/sugar transport protein
Probab=95.57 E-value=0.068 Score=55.48 Aligned_cols=120 Identities=18% Similarity=0.172 Sum_probs=78.8
Q ss_pred HHHHHHHHhHHHHhhhhhhhcCCC-CCCchH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHH
Q 011513 279 LTIWIPIYDRIIVPRLQRLTKKEG-GITILQ-RMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLW 356 (484)
Q Consensus 279 iii~~pl~~~~~~pl~~k~~~~~~-~~s~~~-ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~ 356 (484)
+.+..++.|.+.+|+.-.+.+|.+ +....+ -+.+|.++.++++......... + ........|
T Consensus 42 i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~--------~--------~~~~~~~~~ 105 (428)
T PF13347_consen 42 ILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPA--------G--------LSFTAKLVW 105 (428)
T ss_pred HHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccc--------h--------hhhhhHHHH
Confidence 444456666666666543333210 011111 1667888888888877654110 0 001235667
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccC-chhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFP-ENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP-~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+...|++..++--+....-.++..+.++ ++.|....+.-.+...+|..+...+...+.
T Consensus 106 ~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~ 164 (428)
T PF13347_consen 106 LFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILV 164 (428)
T ss_pred HHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 7888888899999999999999999998 578999999888888888876666655543
No 226
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=95.53 E-value=0.23 Score=47.62 Aligned_cols=122 Identities=17% Similarity=0.088 Sum_probs=82.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 306 ILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 306 ~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
|..-..+|.++..+|+......-..+ ....+.|.+.....+.+.|..+......--..+.-|+
T Consensus 65 p~~~l~iG~~~~~~GY~~~~l~~~~~-----------------i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~ 127 (250)
T PF06813_consen 65 PWVVLLIGAVLGFVGYGLLWLAVSGR-----------------IPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR 127 (250)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCc-----------------cCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc
Confidence 44557788888888888876653311 0124555555555677788877777777777788885
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKY 462 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~ 462 (484)
.||.+.|+.--..++++.+=..+...+.+ + +.+.|..+++....+..++...+.|..++
T Consensus 128 -~RG~vvgilk~~~GLSaai~t~i~~~~f~------------~-----~~~~fll~la~~~~~v~l~~~~~vr~~~~ 186 (250)
T PF06813_consen 128 -SRGTVVGILKGFFGLSAAIFTQIYSAFFG------------D-----DPSSFLLFLAVLPAVVCLVAMFFVRPVPP 186 (250)
T ss_pred -ccCceehhhhHHHHhHHHHHHHHHHHHcC------------C-----ChHHHHHHHHHHHHHHHHHHhhheeccCC
Confidence 69999999988888888775555444332 1 13457777787777666666666666654
No 227
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=95.52 E-value=0.7 Score=49.94 Aligned_cols=137 Identities=14% Similarity=0.282 Sum_probs=85.8
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
..|+...+.+...+..|+++++.+= +++ ..-+.+|.++..+|.++.+-.+
T Consensus 80 ~~w~~~~~~l~~av~~~~~G~LSDl----fGR-------r~~~i~g~~l~vvG~Iv~atA~------------------- 129 (599)
T PF06609_consen 80 WSWFSTAWTLASAVSFPFVGRLSDL----FGR-------RYFFIIGSLLGVVGSIVCATAQ------------------- 129 (599)
T ss_pred chHHHHHHHHHHHHHHHhhHHHHHH----hcc-------hHHHHHHHHHHHhHHHHhhcCC-------------------
Confidence 3577788888888888998887542 221 1336678888888887765432
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
++.-++-..++.|+|-...... ...+.+..|.+.|+...++..+...+....|+.+...+... .+|
T Consensus 130 -----~~~~~iag~~l~GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~------~~W-- 195 (599)
T PF06609_consen 130 -----NMNTFIAGMVLYGVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAH------SGW-- 195 (599)
T ss_pred -----cHHHHHHHHHHHHHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccC------CCc--
Confidence 2224556778888876555543 45578889999998877766655555555666666554321 256
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
.+.|++.+++..+.++..+++
T Consensus 196 --------Rw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 196 --------RWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred --------chHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444433
No 228
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=95.37 E-value=0.099 Score=52.56 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=81.4
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.+-+.-.+.=.+..|+.+.+. +++++| | -+.+|.+..++++...+....
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~S----D~yGRk---p----vll~c~~~va~s~ll~~~S~~------------------- 120 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLS----DRYGRK---P----VLLACLIGVALSYLLWALSRN------------------- 120 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhh----hhhCch---H----HHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3444444555566777777753 344322 3 366777778887777766432
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
...++.+.++.|+.-..+++. -+++.+.++++.|+..|+....+.++|..+||++++....
T Consensus 121 -----F~afv~aR~l~Gi~kgnl~v~-rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 121 -----FAAFVLARFLGGIFKGNLSVI-RAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred -----HHHHHHHHHhhhhccCchHHH-HHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 334556678888888777765 7899999999999999999999999999999999998765
No 229
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=95.33 E-value=1.2 Score=45.36 Aligned_cols=91 Identities=12% Similarity=-0.011 Sum_probs=72.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
.+..+-+.+|+.+++++..+..=... .-+...++...++++.|-.+...++..++..+.
T Consensus 75 ~gyk~gi~lgL~l~avg~~lF~pAa~---------------------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg 133 (422)
T COG0738 75 LGYKAGIVLGLLLYAVGAALFWPAAS---------------------SKSYGFFLVALFILASGIGLLETAANPYVTLLG 133 (422)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhh---------------------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhC
Confidence 56667799999999998877643221 123444556778899999999999999999999
Q ss_pred CchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 384 PENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 384 P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
|++..+.=+.+.....++|..++|.+++..-.
T Consensus 134 ~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lil 165 (422)
T COG0738 134 KPESAAFRLNLAQAFNGLGAILGPLLGSSLIL 165 (422)
T ss_pred CchhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 99888888888888889999999988876543
No 230
>PRK09669 putative symporter YagG; Provisional
Probab=95.00 E-value=0.22 Score=51.96 Aligned_cols=60 Identities=8% Similarity=-0.097 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhH
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLIS 411 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~ 411 (484)
...+|....|++.+++--+..+.-.++..+.. +++.|+...+.-.....+|..+++.+..
T Consensus 107 ~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~ 167 (444)
T PRK09669 107 GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIAL 167 (444)
T ss_pred hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777888877777677777778888877 5677888888888878888887766543
No 231
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=94.95 E-value=1.9e-05 Score=82.45 Aligned_cols=83 Identities=14% Similarity=0.172 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee---ccccccc
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVSWAWG 108 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~---~~g~~~~ 108 (484)
.+...+.+++.+.|+|.|+..+....++.+..+++. |.....+...+.++|.+++..++-.+.. +.+|++.
T Consensus 100 ~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~ 173 (451)
T PF00083_consen 100 NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRIL 173 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc
Confidence 378889999999999999999999999999887632 2345566667888888888776544433 3459999
Q ss_pred chhhhHHHHHHH
Q 011513 109 LGIPAFMMFLSC 120 (484)
Q Consensus 109 F~i~~~~~~l~~ 120 (484)
+.++.+..++..
T Consensus 174 ~~~~~~~~l~~~ 185 (451)
T PF00083_consen 174 LIFGAIPSLLVL 185 (451)
T ss_pred cccccccccccc
Confidence 987776665544
No 232
>PRK10429 melibiose:sodium symporter; Provisional
Probab=94.67 E-value=1.3 Score=46.72 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLI 410 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~ 410 (484)
..+|+...|++..++--+..+.-.++..+.+ +++.|....+.-....++|+.+.+.+.
T Consensus 105 ~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 105 QYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888888888899999999998 699999988876666777766655543
No 233
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=94.58 E-value=0.91 Score=46.32 Aligned_cols=118 Identities=11% Similarity=0.086 Sum_probs=74.3
Q ss_pred cccccccchhhHHHHHHHHHHHhHHHHh-hhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccc
Q 011513 265 KIPAASYAIFSMLGLTIWIPIYDRIIVP-RLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLE 343 (484)
Q Consensus 265 ~i~~~~~~~~n~~~iii~~pl~~~~~~p-l~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~ 343 (484)
.+.+++...+..+-++..+.+ |+.|- +.+| ..+.+-..+++++..+-.+..++..+
T Consensus 45 ~LS~~q~~ll~aiPil~Gall--Rl~~g~l~dr-------fGgR~~~~~s~~l~~IP~~~~~~a~~-------------- 101 (417)
T COG2223 45 GLSEGQKGLLVAIPILVGALL--RLPYGFLTDR-------FGGRKWTILSMLLLLIPCLGLAFAVT-------------- 101 (417)
T ss_pred CCCHHHHHHHHHHHHHHhHHH--HHHHHhhhcc-------cCchHHHHHHHHHHHHHHHHHHHHcc--------------
Confidence 356666655555555554432 33222 2333 33445567778887888877777654
Q ss_pred ccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 344 QRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 344 ~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.|+++..-++.|++-. ....++..+.+.-||+.+|..+|++. ..++|..+...+...+.
T Consensus 102 -------~~~~~~ll~~gll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~ 163 (417)
T COG2223 102 -------YPSTWQLLVIGLLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVA 163 (417)
T ss_pred -------CCchHHHHHHHHHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHH
Confidence 1223444444566676654 33456788899999999999999998 67777777666666554
No 234
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=94.52 E-value=1.3 Score=44.42 Aligned_cols=138 Identities=18% Similarity=0.234 Sum_probs=93.9
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+.+.+++-+..=++.|+..++ -|| .++.+-+..++++.+++..+=..
T Consensus 49 aGlLTtLPll~fg~~ap~a~~L----ar~-------~g~er~l~~~Llli~~G~~iR~~--------------------- 96 (395)
T COG2807 49 AGLLTTLPLLAFGLFAPAAPRL----ARR-------FGEERSLFLALLLIAAGILIRSL--------------------- 96 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhHHH----HHH-------HhhHHHHHHHHHHHHHHHHHHhc---------------------
Confidence 4566667666666666665442 333 55667777888777666544211
Q ss_pred CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 348 AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 348 ~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
-+.+.+....++.+.|-.....-..+++-+.-|++. +.+||+|..+.++|..+++.+...+.... ++|
T Consensus 97 ----~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW-- 164 (395)
T COG2807 97 ----GGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-GLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGW-- 164 (395)
T ss_pred ----ccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-hhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccH--
Confidence 134456677789999999999999999999999988 78999999999999999988876654322 246
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHhh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCA 457 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~ 457 (484)
+... ...+.++++++++.+-..
T Consensus 165 ------~~aL--~~WAl~allAl~~WlPq~ 186 (395)
T COG2807 165 ------RGAL--GFWALLALLALLIWLPQA 186 (395)
T ss_pred ------HHHH--HHHHHHHHHHHHHHhhhc
Confidence 1222 233556666666655543
No 235
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=94.15 E-value=0.84 Score=48.62 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=84.4
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG 347 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 347 (484)
.+|..++......+..|+...+ .+|++ -..-+.+|-+++++|++...+..
T Consensus 83 ~~~i~sl~~~~~~~~gpl~s~l----~~rfg-------~R~v~i~G~~v~~~g~~lssF~~------------------- 132 (509)
T KOG2504|consen 83 IAWIGSLLLGVYLLAGPLVSAL----CNRFG-------CRTVMIAGGLVAALGLLLSSFAT------------------- 132 (509)
T ss_pred HHHHHHHHHHHHHHhccHHHHH----HhhcC-------chHHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 5788888888888888887764 56643 34557889999999999988863
Q ss_pred CCccchHHHHHHHH-HHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 348 AISSLSGLWLIPQL-SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 348 ~~~~~s~~~li~~~-~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
++|.+...| ++.|+|-.++.......+. +=.++.|++++|+-....++|..+=+.+.....
T Consensus 133 -----~i~~l~lt~gvi~G~G~~~~~~paiviv~-~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~ 194 (509)
T KOG2504|consen 133 -----SLWQLYLTFGVIGGLGLGLIYLPAVVILG-TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLL 194 (509)
T ss_pred -----hHHHHHHHHHHHhhccchhhhcchhhhhh-hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHH
Confidence 344555544 7889999888888877777 456778999999999999998887666665543
No 236
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=94.09 E-value=0.83 Score=47.67 Aligned_cols=85 Identities=19% Similarity=0.221 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcc---cCch
Q 011513 310 MAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQ---FPEN 386 (484)
Q Consensus 310 i~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~---aP~~ 386 (484)
+.+|.++.+++.+.++..... ..+........++.++|.++.....-+.+.+. -|++
T Consensus 62 ~~i~~~~~~~~~~~~~~~~~~--------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 62 MIIGWLLGAVSALVLALLPAS--------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred HHHHHHHHHHHHHHHHhcccc--------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 566776666666655554220 11222333344566666666666555555444 4666
Q ss_pred hhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 387 MRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 387 ~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+|..++..+....+|+.++..+++...+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~ 149 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLD 149 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 8899999999999999999888877653
No 237
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=93.87 E-value=1.9 Score=38.17 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.+++.-++.|+|+.+.+...-.++.+.+.++.+++..|+++.....+.++|+.+.-++.
T Consensus 89 ~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 89 SYTLYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999999999888888888877765543
No 238
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=93.70 E-value=0.59 Score=49.84 Aligned_cols=85 Identities=13% Similarity=0.165 Sum_probs=63.4
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCcc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLN 431 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln 431 (484)
.+.++++...++.|++..-....+...+.+..+++.|+..+.+ ......+..+++.+++.+.. +|
T Consensus 169 ~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--------~W------ 233 (521)
T KOG0255|consen 169 PNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--------DW------ 233 (521)
T ss_pred CcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--------hH------
Confidence 4566778888999999999999999999999999999999999 55566666666666655542 45
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 011513 432 KGRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 432 ~~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
..+++..++.+++..+++++
T Consensus 234 ----r~~~~~~~~~~~~~~~~~~l 253 (521)
T KOG0255|consen 234 ----RWLFWIISIPSGLFLLLWFL 253 (521)
T ss_pred ----HHHHHHHHHHHHHHHHHHHc
Confidence 45666666666655555333
No 239
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=93.46 E-value=0.17 Score=54.50 Aligned_cols=214 Identities=19% Similarity=0.158 Sum_probs=114.8
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFM 115 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~ 115 (484)
..|+...+...+ +..++|++++.|+++.... -.+.+.-+|..+|+.+|+++++..+. .|+++...
T Consensus 61 v~ylt~~~~~~~-~~aa~~v~~f~G~~~~~~l--~g~~laD~f~gry~tI~~~s~i~~~G------------~~~lt~~a 125 (571)
T KOG1237|consen 61 VTYLTLELHASG-GGAANNVNAFGGTQFLLPL--LGAFLADSFLGRYFTINIGSLISLLG------------LFGLTLSA 125 (571)
T ss_pred HHHHHHHhccch-HHHHHHHHHHhhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHHHHHH------------HHHHHHHH
Confidence 345555555555 8889999999999987621 12335668889999999999987554 56566666
Q ss_pred HHHHHHHHHhccceeeecC-CCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccccc
Q 011513 116 MFLSCAMFFLGSRLYAKVK-PEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAAIM 194 (484)
Q Consensus 116 ~~l~~i~~l~~~~~~~~~~-p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~i~ 194 (484)
++.++...-+ .+.... ..++|-+....++..++..........+ ..+++.
T Consensus 126 ~~~~l~p~~~---~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r----------------------~~~~~f---- 176 (571)
T KOG1237|consen 126 MIPALLPFMC---KFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIR----------------------PCLLAF---- 176 (571)
T ss_pred HhhhcCCccc---cCCCCCCcccCcchHHHHHHHHHHHHheeccCCCC----------------------Ccchhh----
Confidence 6555533222 111111 1122222223333333332211100000 001111
Q ss_pred CCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCC-CCCCccccccccccch
Q 011513 195 TPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDR-RVGNTHFKIPAASYAI 273 (484)
Q Consensus 195 ~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~-~~g~~g~~i~~~~~~~ 273 (484)
|. +.+ .+...++++. ....++|..+.|..+.++.|..-++. +.. ||.+-++..+.
T Consensus 177 ---------Ga--dQf---d~~~~~~~~~--------~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~--~w~lgf~i~~~ 232 (571)
T KOG1237|consen 177 ---------GA--DQF---DELDPVEVKG--------IPSFFNWFYFSQNGGALLAQTVLVYIQDNV--GWKLGFGIPTV 232 (571)
T ss_pred ---------cc--ccc---CccCcchhhC--------cccchhHHHHHHHHHHHHHHHHHHhhhhcc--cceeeccHHHH
Confidence 10 000 0000111221 23456677777777767666644443 222 68888889999
Q ss_pred hhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 011513 274 FSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGII 327 (484)
Q Consensus 274 ~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~ 327 (484)
.|.+.+++|.+....+ +. ++ +.-..+..+|.++.+.+.-.-...
T Consensus 233 ~~~lai~iF~~g~~~y-----~~--~~---p~gsp~t~i~~Vlvaa~~k~~~~~ 276 (571)
T KOG1237|consen 233 LNALAILIFLPGFPFY-----RY--KK---PRGSPKTRIGQVLVAAAFKRKAVV 276 (571)
T ss_pred HHHHHHHHHHcCceeE-----Ee--eC---CCCCchhHHHHHHHHHHHHHhccC
Confidence 9999999998865443 22 11 222356668888888777765433
No 240
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=92.82 E-value=9 Score=38.94 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=54.5
Q ss_pred CchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccc
Q 011513 30 TPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGL 109 (484)
Q Consensus 30 ~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F 109 (484)
...+...+.+-..++++|.|+ -|-..++-.+-.|... |... .... +.|+ +|.++...+.=.+..++||+|..
T Consensus 162 ~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~---r~~~-~V~~-~~wa--ig~v~ea~law~vm~~~gwr~~l 233 (528)
T KOG0253|consen 162 ASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH---RWLL-TVMS-FFWA--IGQVFEALLAWGVMSNFGWRYLL 233 (528)
T ss_pred CCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC---CCcc-hhHH-HHHH--HHHHHHHHHHHHHHHhhhHHHHH
Confidence 344566778888999999999 8988888888887532 2222 2222 4443 56777666654445667987654
Q ss_pred h-hhhHHHHHHHHHHH
Q 011513 110 G-IPAFMMFLSCAMFF 124 (484)
Q Consensus 110 ~-i~~~~~~l~~i~~l 124 (484)
. +....|+.+...++
T Consensus 234 ~~~~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 234 FTSSTPLMFAARFLVW 249 (528)
T ss_pred HHHHhHHHHHHHHHhh
Confidence 4 44444444444343
No 241
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=92.77 E-value=2.9 Score=43.76 Aligned_cols=104 Identities=13% Similarity=0.085 Sum_probs=73.6
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhccc-CchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCc
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF-PENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDL 430 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a-P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~l 430 (484)
.+..|....|++++++--++...-.++..... .++.|....+..+...++|+.+...+...+...-+++
T Consensus 110 ~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~---------- 179 (467)
T COG2211 110 GKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG---------- 179 (467)
T ss_pred cchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------
Confidence 55667778899999999888888888887774 4678899999999999999888776664443221110
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513 431 NKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 467 (484)
Q Consensus 431 n~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~ 467 (484)
| +..-|+....+++++..+.++++.+..++|..+.
T Consensus 180 ~--~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~ 214 (467)
T COG2211 180 D--KALGYQGTALVLGVIGVILLLFCFFNVKERVVET 214 (467)
T ss_pred c--chhhHHHHHHHHHHHHHHHHHHHHHHhhcccCcc
Confidence 0 1123556666777777777777777777765543
No 242
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=91.76 E-value=0.16 Score=53.68 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~i 111 (484)
+.+.|++.-+++++..|...+...++.++..|++++ ..+|++|...-...+.+||++.+.+.+..| -+++|+.
T Consensus 379 ~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e------~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~ 452 (477)
T PF11700_consen 379 SPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGRE------AEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLF 452 (477)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHH
Confidence 444577777899999999999999999999997532 569999999999999999999999887665 7888887
Q ss_pred hhHHHHHHHHHHH
Q 011513 112 PAFMMFLSCAMFF 124 (484)
Q Consensus 112 ~~~~~~l~~i~~l 124 (484)
-.+.+++++++++
T Consensus 453 l~~lf~~gl~ll~ 465 (477)
T PF11700_consen 453 LLVLFLIGLILLF 465 (477)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777776654
No 243
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=91.37 E-value=0.0028 Score=66.10 Aligned_cols=61 Identities=20% Similarity=0.147 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
+.++++...++.|+|-....+....++.+.+|++.||.+.++......+|..++..+...+
T Consensus 101 ~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~ 161 (451)
T PF00083_consen 101 NFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV 161 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5667777889999999999999999999999999999999999999999998887765443
No 244
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=91.13 E-value=4 Score=42.15 Aligned_cols=25 Identities=16% Similarity=-0.031 Sum_probs=20.9
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHh
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVP 292 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~p 292 (484)
.+.+.+.|.+.-++++|+++.+.++
T Consensus 45 iG~i~s~~~~~~l~~qp~~G~i~Dk 69 (412)
T PF01306_consen 45 IGIIFSAGSLFALLAQPVYGFISDK 69 (412)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHhcch
Confidence 3677889999999999999987654
No 245
>PRK09848 glucuronide transporter; Provisional
Probab=90.48 E-value=5.6 Score=41.36 Aligned_cols=49 Identities=8% Similarity=0.005 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc-hhhhhHHhhHHHHHHH
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFVGFAI 401 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~-~~~g~~~gl~~l~~~i 401 (484)
..+|....+++.+++..+..+...+......+. +.|+...+.-....++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 108 KVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 456777778888888888887777776655544 5677776665544343
No 246
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=90.43 E-value=12 Score=39.71 Aligned_cols=54 Identities=15% Similarity=-0.015 Sum_probs=44.2
Q ss_pred HHHHhHHHHHHh----HHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 362 SLIGFSEAFTII----AEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 362 ~l~~igE~l~~p----~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
++.-.+|+..+. .-+.++.+....+...+.-++..+..++|.++|+.+...+..
T Consensus 148 lfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 148 LFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456665433 458999999999999999999999999999999999888765
No 247
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=89.43 E-value=6.1 Score=40.58 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=52.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
.+...|+.+..+++++|+++.++.+. +++-+...++.+++-.+...+-+.+....
T Consensus 86 v~y~~Ri~~~~~l~~~g~l~va~~~~------------------------v~~~l~Gv~las~ssg~GE~tfL~lt~~y- 140 (402)
T PF02487_consen 86 VPYWIRILICVALSAAGMLLVAFSPS------------------------VWVRLLGVVLASLSSGLGEVTFLSLTHFY- 140 (402)
T ss_pred ccchHHHHHHHHHHHHHHhheeeccc------------------------hhHHHHHHHHHhhhhhhhHHHHHHHHHhc-
Confidence 56788999999999999998766421 22223333444444444446666665443
Q ss_pred CchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 384 PENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 384 P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
|+ ...+.|...++.++.+|+..-...
T Consensus 141 ~~----~~l~~wssGTG~aGl~Ga~~y~~l 166 (402)
T PF02487_consen 141 GK----SSLSAWSSGTGGAGLVGALYYLGL 166 (402)
T ss_pred Cc----cccccccCCcChhhHHHHHHHHHH
Confidence 32 346778888999999888765444
No 248
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=87.97 E-value=1.9 Score=45.13 Aligned_cols=120 Identities=18% Similarity=0.175 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCch
Q 011513 307 LQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPEN 386 (484)
Q Consensus 307 ~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~ 386 (484)
.+-+.+|-++.++|.++++..+. .+...+....+++++|-.+.-|...++..++-|++
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~~----------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~ 149 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISSV----------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKD 149 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc----------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCC
Confidence 35588999999999998877420 11223455667778999999999888888876653
Q ss_pred h--hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513 387 M--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 464 (484)
Q Consensus 387 ~--~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~ 464 (484)
- |-...++++...++|+++++.+.+.+..- .+ ...-|.+.++-+.+.++.|++.-|+++...
T Consensus 150 DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~-------------~g---~~~gF~~aavGm~~gl~~f~~~~r~~~~~~ 213 (498)
T COG3104 150 DPRRDGGFTLFYMGINIGSLIAPIITGLLAIN-------------YG---WHVGFGLAAVGMIIGLVIFLLGRRHVKGIG 213 (498)
T ss_pred CcccCCCccEEEEEeehHHHHHHHHHHHHHHh-------------hC---HHHHHHHHHHHHHHHHHHHHHccchhcCCC
Confidence 2 44567778888899999999999887531 11 345777777888888888888888886664
No 249
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=87.59 E-value=0.52 Score=48.60 Aligned_cols=86 Identities=13% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHh-hhHHHHHHhhhheeeeeccccc------c
Q 011513 35 AFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFT-FTFAMMISLTVIVYVQSDVSWA------W 107 (484)
Q Consensus 35 ~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~-iNiG~~i~~~l~~~l~~~~g~~------~ 107 (484)
....++..+-|+..|.+......++.+..|++. | .++-+++... .-+|..+|..++|++.+++|-+ .
T Consensus 302 ~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~---~---at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~ 375 (400)
T PF03825_consen 302 ALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL---R---ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSA 375 (400)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc---h---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHH
Confidence 334445567899999999999999999998753 2 3344444443 4589999999999999876644 4
Q ss_pred cchhhhHHHHHHHHHHHhc
Q 011513 108 GLGIPAFMMFLSCAMFFLG 126 (484)
Q Consensus 108 ~F~i~~~~~~l~~i~~l~~ 126 (484)
.|.++++..++..+++++.
T Consensus 376 ~~~v~a~~~~~~~~~f~~~ 394 (400)
T PF03825_consen 376 VFLVFAVMALVILVLFVIL 394 (400)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5666666666666666543
No 250
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=86.73 E-value=46 Score=35.16 Aligned_cols=52 Identities=17% Similarity=0.019 Sum_probs=37.5
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH-HHHHHHHHHh
Q 011513 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA-ISNYLNGFLI 410 (484)
Q Consensus 359 ~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~-iG~~lg~~l~ 410 (484)
.+.++.-.++--..-+.-|.++...+++.|...-+..-...+ +|-.+|+.+-
T Consensus 381 ~~~v~~k~~kYsl~dp~kEmly~pld~e~K~K~Ka~iD~v~~r~Gks~gs~i~ 433 (472)
T TIGR00769 381 IQNILSKSTKYSLFDATKEMAYIPLDEEQKVKGKAAIDVVAARLGKSGGALIQ 433 (472)
T ss_pred HHHHHHHHhhhccccHHHHHhcccCCHHHHHHhHhhhhhhhhhhhhHHHHHHH
Confidence 366677777777777888999999999999988776654333 5555555443
No 251
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=86.47 E-value=23 Score=37.25 Aligned_cols=49 Identities=12% Similarity=-0.029 Sum_probs=41.4
Q ss_pred HHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 367 SEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 367 gE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
+-..+...+.+++++....+.|....|+...+.+.+..+++.+++...+
T Consensus 125 ~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~ 173 (463)
T KOG2816|consen 125 GFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVK 173 (463)
T ss_pred chhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3345566778899999999999999999999999999999999887654
No 252
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=86.10 E-value=18 Score=37.85 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
.+...|+..++++..+.+++....-. .+. ......+..+...++.|++..+...+...++.. -
T Consensus 72 i~~~~Ri~~~lv~~~~~~~~~~~l~~-------~~~---------~~~~~f~~~~~~v~~~g~~~~~~q~s~~gla~~-f 134 (437)
T TIGR00939 72 IPVTVRLLGGLVILLVVVILVMVLVK-------VQT---------SETGFFVTTMASVVIINSGMALLQGSLFGLAGV-F 134 (437)
T ss_pred cCccchhHHHHHHHHHHHHHHhheee-------ecC---------CcchHHHHHHHHHHHHHhhhhhhcccchhhccc-C
Confidence 56677888887765555544433211 000 011233334445577888988888888888875 4
Q ss_pred CchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513 384 PENMRSIGGSLAFVGFAISNYLNGFL 409 (484)
Q Consensus 384 P~~~~g~~~gl~~l~~~iG~~lg~~l 409 (484)
|++ +++.+...+++++.++..+
T Consensus 135 p~~----~~~a~~~G~g~aGv~~s~~ 156 (437)
T TIGR00939 135 PST----YSSAVMSGQGLAGVLTSLA 156 (437)
T ss_pred CHH----HHHHHHhcchhHHHHHHHH
Confidence 433 4455566677777776555
No 253
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=84.47 E-value=19 Score=37.91 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=41.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhh---HHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSI---GGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~---~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
.+...++.+++.....+..-.++.+..+ +.++. .+...+...++|..+|+.+++...+
T Consensus 123 ~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~ 183 (468)
T TIGR00788 123 AAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD 183 (468)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335678899999999999999999888 44443 3444444456888888888887653
No 254
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=83.28 E-value=65 Score=34.01 Aligned_cols=45 Identities=11% Similarity=-0.050 Sum_probs=39.3
Q ss_pred HHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 371 TIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 371 ~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
++-.-++++.+....+.-.+..++..+..++|..+|+.+...+..
T Consensus 146 vS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 146 LSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334678999999999999999999999999999999998877653
No 255
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=80.82 E-value=11 Score=37.87 Aligned_cols=102 Identities=9% Similarity=0.030 Sum_probs=62.5
Q ss_pred CCCCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHH-HhhhHHHHHHhhhheeeeeccc
Q 011513 26 CPGPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYY-FTFTFAMMISLTVIVYVQSDVS 104 (484)
Q Consensus 26 ~~~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y-~~iNiG~~i~~~l~~~l~~~~g 104 (484)
|.+-...+...+++|+++-|+++......--+-...+..+++-+ ++.+..-|...- +...+-++.+.+++-++.+..+
T Consensus 113 cl~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~-~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 113 CLTKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFP-QEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFG 191 (354)
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhC
Confidence 33334456889999999999999998887766555554433211 122344444333 2222334445555555555554
Q ss_pred c--cccchhhhHHHHHHHHHHHhccc
Q 011513 105 W--AWGLGIPAFMMFLSCAMFFLGSR 128 (484)
Q Consensus 105 ~--~~~F~i~~~~~~l~~i~~l~~~~ 128 (484)
. ...|..+.+..+++.++....++
T Consensus 192 ~g~vaPF~~a~~~l~~~~~~I~~~W~ 217 (354)
T PF05631_consen 192 FGPVAPFDAAIVLLAVAAVLILKTWP 217 (354)
T ss_pred CCCcchHHHHHHHHHHHHHHHHhccc
Confidence 4 78899998888888876654333
No 256
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=80.75 E-value=15 Score=37.55 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc-c
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS-S 351 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~ 351 (484)
.-+...=++..|++|.+ ..+++ +|++.+-.+....+|+++..++..+- .+. .++...++ .
T Consensus 74 y~P~sLKllWaPiVDs~---y~k~~-GrrksWvvp~q~llG~~mllLs~~v~-------------~~~--g~ng~~p~v~ 134 (510)
T KOG3574|consen 74 YWPFSLKLLWAPIVDSV---YSKRF-GRRKSWVVPCQYLLGLFMLLLSYLVD-------------RGL--GGNGGLPNVV 134 (510)
T ss_pred hhHHHHHHHHHhhhHHH---HHHhh-ccccceeeehHHHHHHHHHHHhhCCC-------------ccc--ccCCCCcchH
Confidence 33444568899999986 23444 45556777788888888776655331 111 01111111 1
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 409 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l 409 (484)
.-.||+.+.-++.+.=+ ++.-..+-..--++.-|-+..........|.++|..+
T Consensus 135 ~lt~~f~LLnflaAtQD----IAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 135 ALTLLFLLLNFLAATQD----IAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHHHHHHHHHhhhh----hhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence 11223333333333333 4444444444445555667777667777777776544
No 257
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=79.99 E-value=2.6 Score=41.08 Aligned_cols=61 Identities=3% Similarity=0.051 Sum_probs=48.9
Q ss_pred HHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc
Q 011513 38 FTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS 104 (484)
Q Consensus 38 ~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g 104 (484)
|.++.++++...+.-...-+.++-..|+++ +..+|...|...|+|-.+.|++++.+.+.-|
T Consensus 356 y~~m~~lGLsysllAcslWP~va~~vpE~q------LGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 356 YTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 667777887777765556677777777643 5679999999999999999999999998644
No 258
>KOG4255 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.45 E-value=81 Score=31.51 Aligned_cols=99 Identities=12% Similarity=0.154 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhccccc-----CCCCCCCC
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTK-----GASTGDWL 426 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~-----~~~~~~w~ 426 (484)
-|+-.+... +.+++.....+.+.+-|..+.=|.=+++...| .++...+ |.+..++..... .+..+..+
T Consensus 111 hS~afl~L~-F~LAivdc~SnVtFLPFMs~lpp~fL~afFvG-----~GLSaLl-PsllaLaQGtg~~~C~~n~t~~r~f 183 (439)
T KOG4255|consen 111 HSWAFLSLL-FGLAIVDCTSNVTFLPFMSQLPPAFLNAFFVG-----MGLSALL-PSLLALAQGTGRLECDLNGTPGRPF 183 (439)
T ss_pred chHHHHHHH-HHHHHHHhhccchhhhhhhhCChHHHHHHHHh-----ccHHHHH-HHHHHHHccCCceeecCCCCCCCCC
Confidence 344333333 56688888888999999988877777765443 3333333 333333332111 01111224
Q ss_pred CcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513 427 PEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 460 (484)
Q Consensus 427 ~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~ 460 (484)
|.++. ...||+++.+++..++..|..+.|.-
T Consensus 184 P~rFs---~s~FFl~l~~~~~~alaAF~vL~r~~ 214 (439)
T KOG4255|consen 184 PPRFS---VSTFFLALFAFTCAALAAFFVLYRLG 214 (439)
T ss_pred CCCcc---HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44333 24688888887777777776665544
No 259
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=76.28 E-value=1e+02 Score=31.95 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
++++-..-++.|++-.. -..-+++++..+|++.--.+.+..-.+.-+|..+|++++..+.
T Consensus 94 v~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllv 153 (412)
T PF01770_consen 94 VLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLV 153 (412)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333444433322 2677899999999999888888777777778888887777654
No 260
>PF01891 CbiM: Cobalt uptake substrate-specific transmembrane region; InterPro: IPR002751 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the integral membrane protein CbiM, which is involved in cobalamin synthesis, although its exact function in unknown.; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane
Probab=72.57 E-value=53 Score=30.33 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccc
Q 011513 273 IFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSL 352 (484)
Q Consensus 273 ~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 352 (484)
-.|.+.+.+..++..+.++...+|. .+..++..+++-..++....+....-........+ +.+...
T Consensus 106 G~N~l~m~~~~~~~~~~~~~~l~~~-------~~~~~~~~~F~ag~l~~~~~~~~~~~~l~l~~~~~-------~~~~~~ 171 (205)
T PF01891_consen 106 GANALNMGVPPVLVSYLLFRLLRRK-------FPRNIFVAGFLAGFLSVLLAALAVSLVLGLSGTAG-------DYPWMA 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------cccHHH
Confidence 4666666666667777665544442 22334444444444444444433221111110000 011233
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE 385 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~ 385 (484)
......+.+.++++.|.++......+..+.-|+
T Consensus 172 ~~~~~~~~~~~l~~~Eg~ltg~~v~~l~~~rP~ 204 (205)
T PF01891_consen 172 LVQAYLPSHLLLAFPEGFLTGMVVTFLVVYRPE 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 444556788889999999999999998888775
No 261
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=72.01 E-value=46 Score=35.25 Aligned_cols=123 Identities=12% Similarity=0.182 Sum_probs=66.5
Q ss_pred HHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccCCCcccccCCCCccch---
Q 011513 278 GLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIIS-GIIEDKRRSLALSRPVGLEQRRGAISSLS--- 353 (484)
Q Consensus 278 ~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~s--- 353 (484)
.=++.+|++|.+. .+|++ |++.+-.+.+..+|+.+..+|.-+. .....-..+.-..++ ......++
T Consensus 51 lKlLWaPiVDs~y---~~~~G-RRKSWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~------~~~~~~~~i~~ 120 (544)
T PF13000_consen 51 LKLLWAPIVDSVY---SKRIG-RRKSWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQG------ESTVNNITIKF 120 (544)
T ss_pred HHHhhhhhhhhhc---ccccC-CcchhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCC------CCcccccchhH
Confidence 4578899999973 45554 4456778888888887777665441 000000000000000 01112222
Q ss_pred -HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 354 -GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 354 -~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+++...+++.+.=++-+- -.+-..--++.+|.+.......+..|.++|-.+--..+
T Consensus 121 Lt~~F~~L~fl~ATQDIAVD----GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 121 LTWFFFILVFLCATQDIAVD----GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred HHHHHHHHHHHHccCCceee----hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 2333344555555554333 33333345566788888888888888888766554443
No 262
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=70.51 E-value=12 Score=38.98 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=79.8
Q ss_pred ccccccchhhHH---HHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcc
Q 011513 266 IPAASYAIFSML---GLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGL 342 (484)
Q Consensus 266 i~~~~~~~~n~~---~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 342 (484)
.|+.....+|.. ..++.+.+++++- +++++| +.++.-++++.+|-++.+.... +
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lg----D~~GRK-------~vYG~~liImIi~t~~~~~s~~--------~---- 137 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLG----DKFGRK-------KVYGKELIIMIICSALSGLSVG--------T---- 137 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHH----hhhcch-------hhhhHHHHHHHHHHHHhccCCC--------C----
Confidence 677766666654 4567777777753 333221 2344445555554443222110 0
Q ss_pred cccCCCCcc-chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 343 EQRRGAISS-LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 343 ~~~~~~~~~-~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
..+ -=++|+....+++|+|-.-=.|.+-......|-++-||..+++.+..++.|-..|+.+.-++
T Consensus 138 ------~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv 203 (538)
T KOG0252|consen 138 ------TSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV 203 (538)
T ss_pred ------CCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence 112 12457777889999999989999999999999999999999999999998888887776554
No 263
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=70.23 E-value=1e+02 Score=30.15 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHH
Q 011513 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVG 398 (484)
Q Consensus 359 ~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~ 398 (484)
..+.++-..-.+.+|..+-+-.+..|++-|+..|..+-.-
T Consensus 349 i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFRvP 388 (454)
T KOG4332|consen 349 IGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFRVP 388 (454)
T ss_pred HHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhheech
Confidence 4556666666678899899999999999999988765543
No 264
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=68.99 E-value=1e+02 Score=32.30 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=35.2
Q ss_pred HHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 361 LSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 361 ~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
-.+.+.++.++...-.-.....-|++.|+.+..+-.+..-+|-.+|-++..++.
T Consensus 147 q~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV 200 (480)
T KOG2563|consen 147 QSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILV 200 (480)
T ss_pred HHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceec
Confidence 367788887766554455666789999988877665555555555555544443
No 265
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=66.33 E-value=30 Score=36.14 Aligned_cols=167 Identities=14% Similarity=0.052 Sum_probs=97.9
Q ss_pred HHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCC
Q 011513 222 KVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKE 301 (484)
Q Consensus 222 k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~ 301 (484)
.+++.+..+.+..-+.|....+..|-+++ ....+... .+..+-.-|+.-++.+|+++...+..-.|+++|
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~--------~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRR- 101 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKW--------SSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRR- 101 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCccc--------ccccccccccccceecccccccccccccccccc-
Confidence 34455555556666778877776665533 22222111 233455667788888999998876655555432
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCC-CCccchHHHHHHHHHHHHhHHHHHHhHHHHHhh
Q 011513 302 GGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRG-AISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYY 380 (484)
Q Consensus 302 ~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~ 380 (484)
+| =|.+|.++.+++++...+....-.. .-++.. .+.+.++-..+..+.++=++-=......=++..
T Consensus 102 -RP----fI~~~s~~i~~~l~Lig~aaDig~~--------lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~ 168 (498)
T KOG0637|consen 102 -RP----FILAGSLLIAVSLFLIGYAADIGLL--------LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLA 168 (498)
T ss_pred -cc----hHHHhhHHHHHHHhhhhhHhhhhHH--------hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHH
Confidence 11 1567777777777766665432111 112221 133445555555666666666444555567777
Q ss_pred cccCchhhhh-HHhhHHHHHHHHHHHHHHHhH
Q 011513 381 KQFPENMRSI-GGSLAFVGFAISNYLNGFLIS 411 (484)
Q Consensus 381 ~~aP~~~~g~-~~gl~~l~~~iG~~lg~~l~~ 411 (484)
+.+-...|-. ..+.+-+..++|+.+|=.+++
T Consensus 169 Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 169 DLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred HhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 7754444444 888888999999999865554
No 266
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=66.31 E-value=80 Score=29.24 Aligned_cols=62 Identities=18% Similarity=0.149 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCc-hhhhhHHhhHHH-HHHHHHHHHHHHhHhhc
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPE-NMRSIGGSLAFV-GFAISNYLNGFLISMVH 414 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~-~~~g~~~gl~~l-~~~iG~~lg~~l~~~~~ 414 (484)
+.++++...++.++++....+....++.+..|+ +.++...+.... ...+|..+++.+++.+.
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLL 156 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666668999999999999999999998 778888888777 57778888886666554
No 267
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=65.24 E-value=1.8e+02 Score=30.34 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 352 LSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 352 ~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
.+...++...++-=+|=-.........+-+.+|++.||...|.-...+++-..+.-.++-..
T Consensus 354 ~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 354 ISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45544444444444555555566677777889999999999999999998888876665443
No 268
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=64.51 E-value=45 Score=31.99 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=34.2
Q ss_pred cCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513 383 FPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 460 (484)
Q Consensus 383 aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~ 460 (484)
+-+-+|...+|+-.+.++..+.+.+...+-+ +|+..+-...+....=++-.++.++..++|.++...-
T Consensus 72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grf----------GlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRF----------GLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhc----------eeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 3344666667776777777776665555433 2332111111112222334456666777776654444
No 269
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=62.33 E-value=1.9e+02 Score=29.81 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=27.2
Q ss_pred HHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHH
Q 011513 358 IPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFL 409 (484)
Q Consensus 358 i~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l 409 (484)
+...++.+.+........+-.+...-|+=.++.+. .+++++.+..++
T Consensus 121 ~~~vv~~~~a~a~~qgs~~G~a~~~P~~ytqavm~-----G~a~aG~l~Sl~ 167 (406)
T KOG1479|consen 121 LIIVVLLNLANAVVQGSLYGLAGLFPSEYTQAVMS-----GQALAGTLTSLL 167 (406)
T ss_pred HHHHHHHhhhhhhhccchhhhhhcCCHHHHHHHHh-----cchhHhHHHHHH
Confidence 34556778888777777777766644444444333 355555554444
No 270
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=62.08 E-value=2.2e+02 Score=30.21 Aligned_cols=54 Identities=17% Similarity=0.016 Sum_probs=43.5
Q ss_pred HHHHhHHHHHH----hHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 362 SLIGFSEAFTI----IAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 362 ~l~~igE~l~~----p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
++.-.+|+.-+ -.-+.|+-++.-.+...+..++..+..+++.++++.+.....+
T Consensus 152 ~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 152 LFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455676444 3556889999999999999999999999999999999877654
No 271
>PRK07331 cobalt transport protein CbiM; Provisional
Probab=55.56 E-value=1.7e+02 Score=29.13 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=27.9
Q ss_pred HHHHHHHHHHH-HhHHHHHHhHHHHHhhcccCchh
Q 011513 354 GLWLIPQLSLI-GFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 354 ~~~li~~~~l~-~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
+.-+.+.++.+ ++.|.++......++.+..|+-+
T Consensus 186 ~~~m~~~hl~i~gi~Eg~iT~~v~~~l~~~~p~ll 220 (322)
T PRK07331 186 IPAMLLPHLLVAGILEGIFTALVFSFIKRVSPGIL 220 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHh
Confidence 33456677776 99999999999999999888765
No 272
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=54.20 E-value=12 Score=38.59 Aligned_cols=82 Identities=15% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec-ccccccchhhhH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-VSWAWGLGIPAF 114 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-~g~~~~F~i~~~ 114 (484)
-+++.-.++++..|+.....-++.++..|+++. .++|++|-..--.++++||.+.+.+-+. .+-++++..-.+
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~------~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~v 416 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKE------GRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIV 416 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccc------cceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 345555789999999999999999999997542 4599999999999999999998877553 345666655555
Q ss_pred HHHHHHHHH
Q 011513 115 MMFLSCAMF 123 (484)
Q Consensus 115 ~~~l~~i~~ 123 (484)
.+.++++++
T Consensus 417 ll~iGl~~L 425 (438)
T COG2270 417 LLLIGLLLL 425 (438)
T ss_pred HHHhhHhhE
Confidence 555555543
No 273
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=47.02 E-value=1e+02 Score=31.75 Aligned_cols=58 Identities=9% Similarity=-0.020 Sum_probs=46.4
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
.+.+|.+.+.----+..++++|.++++|++..|++|.+.+...++|+..=..++..+.
T Consensus 372 ~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~ 429 (510)
T KOG3574|consen 372 LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLA 429 (510)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhc
Confidence 3457788777777788899999999999999999999999988888766555544443
No 274
>PRK11909 cobalt transport protein CbiM; Provisional
Probab=46.75 E-value=2.6e+02 Score=26.43 Aligned_cols=37 Identities=22% Similarity=0.046 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHH-HhHHHHHHhHHHHHhhcccCchhhh
Q 011513 353 SGLWLIPQLSLI-GFSEAFTIIAEVEFYYKQFPENMRS 389 (484)
Q Consensus 353 s~~~li~~~~l~-~igE~l~~p~~~~~~~~~aP~~~~g 389 (484)
+..-+.+.++.+ +++|.++......++.+.-|+++-+
T Consensus 182 ~~~~~~~~h~~i~~i~Eg~iT~~~~~~l~~~~~~~~l~ 219 (230)
T PRK11909 182 SIPAMLFAHLTVAGIVEAIVTGLVVYYLQKADEENLLY 219 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhc
Confidence 344566777887 9999999999999999986766543
No 275
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=46.52 E-value=16 Score=34.15 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHH-hhhHHHHHHhhhheeeeec--cccccc
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYF-TFTFAMMISLTVIVYVQSD--VSWAWG 108 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~-~iNiG~~i~~~l~~~l~~~--~g~~~~ 108 (484)
.....+.+.+.+.+++.|...|...+++.+.+++ . ..+...+++... ..++|..+++.+++.+... .+|+..
T Consensus 92 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
T COG0477 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPE-A----TERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAA 166 (338)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCc-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 4456677777778999999999999999999885 1 113556666666 5778888888766665542 577775
Q ss_pred chhhhHHH
Q 011513 109 LGIPAFMM 116 (484)
Q Consensus 109 F~i~~~~~ 116 (484)
|.+.....
T Consensus 167 ~~~~~~~~ 174 (338)
T COG0477 167 FLLAALLG 174 (338)
T ss_pred HHHHHHHH
Confidence 55444333
No 276
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=45.36 E-value=64 Score=34.19 Aligned_cols=54 Identities=13% Similarity=0.043 Sum_probs=47.7
Q ss_pred HHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHh
Q 011513 357 LIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLI 410 (484)
Q Consensus 357 li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~ 410 (484)
++.+|++.++.--..+...++|-+++++|..-|+||.+.+...++|+---..++
T Consensus 408 vI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~v 461 (544)
T PF13000_consen 408 VIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFV 461 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHH
Confidence 346889999999999999999999999999999999999999999987655444
No 277
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=45.07 E-value=3.7e+02 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.042 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
++|.+....+.-|+-...+.......+.++.|++.|-+.||+-..+-++|-.+++.++-.+
T Consensus 334 si~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 334 SIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4544445556778888888888889999999999999999999999999999998887554
No 278
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.91 E-value=2.5e+02 Score=29.56 Aligned_cols=62 Identities=13% Similarity=0.140 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcc
Q 011513 354 GLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHR 415 (484)
Q Consensus 354 ~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~ 415 (484)
-+.....=.++|+|-.+.+...-++.++...++-+.+..++.+.....+.++|+...-.+..
T Consensus 102 ~y~~yfssallG~Gaallw~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~ 163 (461)
T KOG3098|consen 102 SYYLYFSSALLGFGAALLWTGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQ 163 (461)
T ss_pred hHHHHHHHHHhhhhHHheecccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeE
Confidence 44555666899999999999999999999999999999999998888888888777655443
No 279
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.33 E-value=15 Score=28.12 Aligned_cols=53 Identities=11% Similarity=0.176 Sum_probs=36.6
Q ss_pred hhHHHHHHhhhHHHHHHhhhheeeeecccccccchhhhHHHHHHHHHHHhccceee
Q 011513 76 SFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAFMMFLSCAMFFLGSRLYA 131 (484)
Q Consensus 76 ~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~~~~l~~i~~l~~~~~~~ 131 (484)
.+-.++...+-+++++|.+ .||+.++ .+..+.+-+++.++++++.+=-++.|+
T Consensus 8 ~ae~l~~~il~~~~iisfi-~Gy~~q~--~~~~~~~~~~g~~~~~lv~vP~Wp~y~ 60 (76)
T PF06645_consen 8 LAEKLMQYILIISAIISFI-VGYITQS--FSYTFYIYGAGVVLTLLVVVPPWPFYN 60 (76)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHhheeCCcHhhc
Confidence 3455666888888888844 5777664 467788888888888877654444454
No 280
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.19 E-value=25 Score=29.67 Aligned_cols=25 Identities=8% Similarity=-0.061 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc
Q 011513 438 FYYLVAALGLLNFGFFLLCAKWYKY 462 (484)
Q Consensus 438 ~f~~la~l~~~~~i~~~~~~~~~~~ 462 (484)
.|.++|++.++.+++++++.|+.|+
T Consensus 70 i~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 70 IFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444444444444444
No 281
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.20 E-value=43 Score=26.91 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHH-HHHHHhhhcccccCCCCCCccccccccCC
Q 011513 439 YYLVAALGLLNF-GFFLLCAKWYKYKGSGDGAPEVAMEKLNP 479 (484)
Q Consensus 439 f~~la~l~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (484)
|++++++.++.+ +.--..++..+..+.+++++++.++|..+
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~~~~~~~~~~~~v~~~~~~g 47 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARELEETEKEEEENEVQDDKYGG 47 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhccccccCCCCCccccCC
Confidence 455554333333 33344445554556667777777776643
No 282
>PRK11715 inner membrane protein; Provisional
Probab=40.50 E-value=4.5e+02 Score=27.46 Aligned_cols=19 Identities=11% Similarity=0.060 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011513 312 IGMILAIFTMIISGIIEDK 330 (484)
Q Consensus 312 iG~~l~~i~~~~~~~~~~~ 330 (484)
-|+++.++.|+...+.|..
T Consensus 306 YgiLFI~LTF~~fFlfE~~ 324 (436)
T PRK11715 306 YAILFIALTFAAFFLFELL 324 (436)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788889999999998873
No 283
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=39.95 E-value=4.6e+02 Score=27.37 Aligned_cols=26 Identities=23% Similarity=0.420 Sum_probs=22.3
Q ss_pred ccccccchhhHHHHHHHHHHHhHHHH
Q 011513 266 IPAASYAIFSMLGLTIWIPIYDRIIV 291 (484)
Q Consensus 266 i~~~~~~~~n~~~iii~~pl~~~~~~ 291 (484)
+|++.+..+..+..++++|.++++++
T Consensus 38 l~~siygl~~~~~~~~f~~~vG~~iD 63 (432)
T PF06963_consen 38 LPVSIYGLVRSLSAILFGPWVGRWID 63 (432)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 56778888889999999999999765
No 284
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=39.67 E-value=4.6e+02 Score=27.33 Aligned_cols=19 Identities=16% Similarity=0.165 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 011513 312 IGMILAIFTMIISGIIEDK 330 (484)
Q Consensus 312 iG~~l~~i~~~~~~~~~~~ 330 (484)
-|+++.++.|+...+.|..
T Consensus 300 YgiLFI~LTF~~fflfE~~ 318 (430)
T PF06123_consen 300 YGILFIGLTFLAFFLFELL 318 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788888899999888874
No 285
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=39.63 E-value=45 Score=28.69 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccccccc
Q 011513 438 FYYLVAALGLLNFGFFLLCAKWYKYKGSGDGAPEVAMEK 476 (484)
Q Consensus 438 ~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (484)
-..+.+.++++....+.+..||.+.|++|+++-|.+++.
T Consensus 40 aL~ls~~l~~mig~yl~~~~rr~~~rPED~~daEI~dgA 78 (137)
T PF12270_consen 40 ALVLSGGLALMIGFYLRFTARRIGPRPEDREDAEIADGA 78 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCccccccccccCC
Confidence 445667788888888899999997776666666555543
No 286
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=38.02 E-value=5.2e+02 Score=27.47 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=30.4
Q ss_pred hhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513 56 LAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS 101 (484)
Q Consensus 56 ~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~ 101 (484)
-++..|.++.++ ..++|.++..+.|+|.+++..+..++.+
T Consensus 166 W~fAN~itt~~e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEE------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665432 4579999999999999999988877766
No 287
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=36.64 E-value=5.5e+02 Score=27.32 Aligned_cols=28 Identities=11% Similarity=0.311 Sum_probs=25.0
Q ss_pred hhhhHHHHHHhhhHHHHHHhhhheeeee
Q 011513 74 ITSFFNWYYFTFTFAMMISLTVIVYVQS 101 (484)
Q Consensus 74 ~~~~f~~~Y~~iNiG~~i~~~l~~~l~~ 101 (484)
..|+|..|+...|++.+++..+..++.+
T Consensus 182 akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 182 AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4579999999999999999999888866
No 288
>PHA02902 putative IMV membrane protein; Provisional
Probab=36.25 E-value=90 Score=22.86 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513 438 FYYLVAALGLLNFGFFLLCAKWYKYKG 464 (484)
Q Consensus 438 ~f~~la~l~~~~~i~~~~~~~~~~~~~ 464 (484)
-|.++++..++..++.+...|||+-..
T Consensus 5 tfvi~~v~v~Ivclliya~YrR~kci~ 31 (70)
T PHA02902 5 TFVILAVIVIIFCLLIYAAYKRYKCIP 31 (70)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 355566555555555555667775443
No 289
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=35.35 E-value=60 Score=30.97 Aligned_cols=14 Identities=21% Similarity=0.228 Sum_probs=7.1
Q ss_pred HHHhhhcccccCCC
Q 011513 453 FLLCAKWYKYKGSG 466 (484)
Q Consensus 453 ~~~~~~~~~~~~~~ 466 (484)
+..-++|++++-++
T Consensus 68 ~~~~~~k~~~~~~~ 81 (248)
T PF11368_consen 68 FIYKSRKYKKLYEE 81 (248)
T ss_pred HHHHHHHHHHHhcc
Confidence 44445666555444
No 290
>TIGR00123 cbiM cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined.
Probab=35.18 E-value=3.8e+02 Score=24.99 Aligned_cols=32 Identities=9% Similarity=0.177 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHhHHHHHhhcccCchh
Q 011513 356 WLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM 387 (484)
Q Consensus 356 ~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~ 387 (484)
...+.++.+++.|.++......++.+..|+-.
T Consensus 181 ~~~~~h~~~~i~Eg~iT~~~~~~l~~~~p~~l 212 (214)
T TIGR00123 181 IFAYTQVPLAIAEGLLTVMIYDYITKLRPDTL 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhh
Confidence 34456678899999999999999999988754
No 291
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=33.86 E-value=29 Score=22.03 Aligned_cols=17 Identities=35% Similarity=0.841 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCCCCCc
Q 011513 15 PPDCGNQDSGACPGPTP 31 (484)
Q Consensus 15 p~~~~~~~~~~~~~~~~ 31 (484)
||+|++++-+.|..|.+
T Consensus 9 pA~CDpn~~~~C~CPeG 25 (34)
T PF09064_consen 9 PADCDPNSPGQCFCPEG 25 (34)
T ss_pred CCccCCCCCCceeCCCc
Confidence 89999987778888764
No 292
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=33.74 E-value=67 Score=22.47 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=15.2
Q ss_pred HHHHhhhcccccCCCCCCccccccccC
Q 011513 452 FFLLCAKWYKYKGSGDGAPEVAMEKLN 478 (484)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (484)
...-++|+|.|+-.-|..++...++.+
T Consensus 19 ~I~~~~K~ygYkht~d~~e~~~~~~~~ 45 (50)
T PF12606_consen 19 SICTTLKAYGYKHTVDPLEDEPEEKKE 45 (50)
T ss_pred HHHHHhhccccccccCCCCCCchhhcc
Confidence 345678888888655553333333333
No 293
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=29.50 E-value=25 Score=29.87 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=5.7
Q ss_pred HHHHHHhhhccccc
Q 011513 450 FGFFLLCAKWYKYK 463 (484)
Q Consensus 450 ~i~~~~~~~~~~~~ 463 (484)
+++++...||.+|+
T Consensus 16 ~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 16 LFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHhhc
Confidence 33333444444443
No 294
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=28.88 E-value=43 Score=32.25 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=39.5
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHhHhhcccc-cCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 011513 386 NMRSIGGSLAFVGFAISNYLNGFLISMVHRFT-KGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKG 464 (484)
Q Consensus 386 ~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~-~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~ 464 (484)
+.|+..+.+......+|.+++-.. ++...+ .......| ...+.+.+.+.++.+++|..+-++.+-..
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ip--F~~~~~~~~~~~~~W----------~~I~si~~lL~~IpLIly~ifGk~fd~~~ 69 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIP--FLISSSVVIALTNNW----------QWILSIFILLIFIPLILYIIFGKNFDIYS 69 (267)
T ss_pred CccceeeeeccccchhhHHHHHhh--HHhcchHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 345666666666666777665332 221100 00000112 23445566677777888888888776554
Q ss_pred CCCCCcccc
Q 011513 465 SGDGAPEVA 473 (484)
Q Consensus 465 ~~~~~~~~~ 473 (484)
.+++++.++
T Consensus 70 ~~~k~~k~~ 78 (267)
T PF07672_consen 70 PKEKQEKEN 78 (267)
T ss_pred ccccccccc
Confidence 443443333
No 295
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=27.92 E-value=5.1e+02 Score=26.47 Aligned_cols=94 Identities=13% Similarity=0.092 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccC
Q 011513 353 SGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNK 432 (484)
Q Consensus 353 s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~ 432 (484)
++||.=..|++....-.+..+....-+++.-.++.-|...|++.+ ++-.+=.++.-++.+.. ++.=++-+
T Consensus 325 ~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTF---vAl~lQsilT~iVvd~~-------g~~L~ir~ 394 (433)
T KOG3810|consen 325 HIWVCYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTF---VALILQSILTLIVVDDR-------GLGLDIRT 394 (433)
T ss_pred ceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHH---HHHHHHHhheEEEEccc-------ccCCCcce
Confidence 366666789999888888888888888888888888999998766 33344344444443322 11111111
Q ss_pred c--hhHHHHHHHHHHHHHHHHHHHHh
Q 011513 433 G--RLDYFYYLVAALGLLNFGFFLLC 456 (484)
Q Consensus 433 ~--~~~~~f~~la~l~~~~~i~~~~~ 456 (484)
+ -+..||.++|++.++........
T Consensus 395 Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 395 QFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred eEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 1 13458888888888776654443
No 296
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=27.30 E-value=80 Score=30.84 Aligned_cols=86 Identities=10% Similarity=0.203 Sum_probs=58.0
Q ss_pred CCCchhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeee---ccc
Q 011513 28 GPTPWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQS---DVS 104 (484)
Q Consensus 28 ~~~~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~---~~g 104 (484)
+|++.++..-++|..++-...|.+.|.+.-+=.+..|++. ++...|||-.-.|+=.-++ .--++. ..+
T Consensus 338 sP~kes~~~s~i~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClv---Lynlh~~~~p~~ 408 (454)
T KOG4332|consen 338 SPSKESPSESLIGFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLV---LYNLHVDAFPTT 408 (454)
T ss_pred CCCcCCchHHHHHHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhh---heecccccCccc
Confidence 4444445555788888889999999988877766666532 4678999988888733322 111222 123
Q ss_pred ccccchhhhHHHHHHHHH
Q 011513 105 WAWGLGIPAFMMFLSCAM 122 (484)
Q Consensus 105 ~~~~F~i~~~~~~l~~i~ 122 (484)
-+..|.+|.+.+.++.+.
T Consensus 409 tr~mf~icS~~~~~a~i~ 426 (454)
T KOG4332|consen 409 TRNMFGICSAFLFVASIL 426 (454)
T ss_pred cchhhhhhHHHHHHHHHH
Confidence 457799999999988754
No 297
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=26.64 E-value=2.9e+02 Score=29.88 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=52.8
Q ss_pred HHhhcccCchhhhhHHhhHH-HHHHHHHHHHHHHhHhhcccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHH
Q 011513 377 EFYYKQFPENMRSIGGSLAF-VGFAISNYLNGFLISMVHRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLL 455 (484)
Q Consensus 377 ~~~~~~aP~~~~g~~~gl~~-l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~ 455 (484)
..+-...-.+++|.++|++. +.-++|+++|+.+...+..-+ ....|.+.+.+.++..+.+=.
T Consensus 486 ~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~t-----------------tf~~~giAcl~~l~~~~~iq~ 548 (618)
T KOG3762|consen 486 HVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGART-----------------TFRIFGIACLVTLALFISIQL 548 (618)
T ss_pred hhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHH-----------------HHHHHHHHHHHHHHHHHHhhh
Confidence 33445567788899999887 788999999999987776555 245788888888888887766
Q ss_pred hhhccccc
Q 011513 456 CAKWYKYK 463 (484)
Q Consensus 456 ~~~~~~~~ 463 (484)
..++-...
T Consensus 549 ~l~~~~~i 556 (618)
T KOG3762|consen 549 LLKRRGFI 556 (618)
T ss_pred hhcccccc
Confidence 66665444
No 298
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=26.01 E-value=6.1e+02 Score=25.43 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=19.1
Q ss_pred hhhHHHHHHhhhh------eeeeecccccccchhhhHHHHHHHHH
Q 011513 84 TFTFAMMISLTVI------VYVQSDVSWAWGLGIPAFMMFLSCAM 122 (484)
Q Consensus 84 ~iNiG~~i~~~l~------~~l~~~~g~~~~F~i~~~~~~l~~i~ 122 (484)
.+-+|-+++..++ .++.++ |+...+.-+...+++-.++
T Consensus 14 ~~~lgQ~lsl~~~~t~~~s~~l~~~-~~~~P~~Qs~~~Y~~l~~v 57 (334)
T PF06027_consen 14 VLLLGQVLSLCITGTGTFSSLLANK-GVNIPTFQSFFNYVLLALV 57 (334)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhc-CccCcHHHHHHHHHHHHHH
Confidence 3444444444333 345554 6666666555555544443
No 299
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=25.26 E-value=24 Score=34.89 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHH
Q 011513 362 SLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGF 408 (484)
Q Consensus 362 ~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~ 408 (484)
++.+.+-.+.....+.++...-|+-++ .....+++++.+..+
T Consensus 5 ~~~~~~~~~~q~s~~glas~~p~~y~~-----a~~~Gq~~aGv~~s~ 46 (309)
T PF01733_consen 5 ALIGFANAVLQSSLFGLASLFPPKYTQ-----AVMIGQGLAGVIVSL 46 (309)
T ss_dssp -----------------------------------------------
T ss_pred EEEHhhhHHHhccHHHHHhcCCHHHHH-----HHHhhccHHHHHHHH
Confidence 455666667777778888764443333 344445666655433
No 300
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=24.86 E-value=1e+02 Score=27.43 Aligned_cols=27 Identities=15% Similarity=0.285 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccc
Q 011513 436 DYFYYLVAALGLLNFGFFLLCAKWYKY 462 (484)
Q Consensus 436 ~~~f~~la~l~~~~~i~~~~~~~~~~~ 462 (484)
...++++.+++.+.++.|++-..|.++
T Consensus 95 ~R~~~Vl~g~s~l~i~yfvir~~R~r~ 121 (163)
T PF06679_consen 95 KRALYVLVGLSALAILYFVIRTFRLRR 121 (163)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344556666666666655554444443
No 301
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.80 E-value=1.5e+02 Score=29.68 Aligned_cols=34 Identities=15% Similarity=0.403 Sum_probs=24.5
Q ss_pred HHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 377 EFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 377 ~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
-..+-+=|..|| .|+|+++.+.|++++.+++..+
T Consensus 204 ivLFPLWP~~mR---~gvyY~sig~~gfl~~IlvLaI 237 (372)
T KOG2927|consen 204 IVLFPLWPRRMR---QGVYYLSIGAGGFLAFILVLAI 237 (372)
T ss_pred HHhcccCcHHHh---cceeeeecchhHHHHHHHHHHH
Confidence 344556788888 6888888888888876665444
No 302
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=23.58 E-value=42 Score=33.36 Aligned_cols=81 Identities=14% Similarity=0.087 Sum_probs=52.4
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhccc
Q 011513 304 ITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQF 383 (484)
Q Consensus 304 ~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~a 383 (484)
...-.|+.+-.++.+.+|.+.++.+. ..++..-.+.+-+--|+|| .+-+++....
T Consensus 89 fpf~~Ri~~~v~~sa~s~~lVafs~s--------------------~~~sL~GV~~aSissGlGE----iTFL~lss~Y- 143 (409)
T KOG3880|consen 89 FPFGFRIALVVLLSALSFFLVAFSNS--------------------VPMSLLGVVFASISSGLGE----ITFLALSSRY- 143 (409)
T ss_pred cccchHHHHHHHHHhcceEEEEeccc--------------------hhHHHhhhhhhhhcCCcce----eehhhhhccC-
Confidence 34557888888999999988776432 2355544555556667777 6666665543
Q ss_pred CchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 384 PENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 384 P~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
.....+-|...++.++.+|+.--..+
T Consensus 144 ----~~~~i~~WSSGTGgAGliGa~SYa~l 169 (409)
T KOG3880|consen 144 ----PSIVIAGWSSGTGGAGLIGASSYAFL 169 (409)
T ss_pred ----CCceeccccCCCCcchhhhhhHHHHH
Confidence 34455568887888888876554443
No 303
>PRK06265 cobalt transport protein CbiM; Validated
Probab=20.75 E-value=6.5e+02 Score=22.98 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=23.7
Q ss_pred HHHHHHHhHHHHHHhHHHHHhhcccCchhh
Q 011513 359 PQLSLIGFSEAFTIIAEVEFYYKQFPENMR 388 (484)
Q Consensus 359 ~~~~l~~igE~l~~p~~~~~~~~~aP~~~~ 388 (484)
+.++.+++.|.++......+..+.-|+-.+
T Consensus 169 ~~~~~l~~~Eg~ltg~~v~~l~~~rP~~l~ 198 (199)
T PRK06265 169 LAHLPLMVIEGIITAFAVSFLARVRPELLK 198 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCHHhcc
Confidence 455667777999999999999998887543
Done!