Query 011513
Match_columns 484
No_of_seqs 180 out of 1411
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 09:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xut_A Proton/peptide symporte 99.9 1.7E-22 5.7E-27 213.0 13.3 399 33-468 108-514 (524)
2 4aps_A DI-OR tripeptide H+ sym 99.8 1.3E-19 4.4E-24 189.2 21.7 357 33-467 107-482 (491)
3 1pw4_A Glycerol-3-phosphate tr 99.5 1.8E-13 6.2E-18 140.4 17.7 315 33-459 118-436 (451)
4 3o7q_A L-fucose-proton symport 99.2 4.5E-10 1.5E-14 114.5 20.2 263 32-417 115-408 (438)
5 2gfp_A EMRD, multidrug resista 99.1 3E-11 1E-15 121.0 3.1 84 32-121 86-169 (375)
6 4gc0_A D-xylose-proton symport 98.8 4E-08 1.4E-12 101.7 14.9 85 31-121 123-215 (491)
7 2cfq_A Lactose permease; trans 98.7 8.8E-09 3E-13 105.0 6.8 139 269-458 262-401 (417)
8 3o7q_A L-fucose-proton symport 98.5 5.1E-06 1.7E-10 84.2 19.6 114 269-414 64-177 (438)
9 1pw4_A Glycerol-3-phosphate tr 98.5 4.3E-06 1.5E-10 85.0 18.4 144 269-458 65-208 (451)
10 4aps_A DI-OR tripeptide H+ sym 98.3 2.2E-05 7.7E-10 80.9 17.7 143 268-461 56-201 (491)
11 2gfp_A EMRD, multidrug resista 98.1 1.6E-05 5.4E-10 79.0 12.6 111 269-414 38-148 (375)
12 2xut_A Proton/peptide symporte 98.1 5.4E-05 1.8E-09 78.8 17.1 143 269-460 57-202 (524)
13 4gc0_A D-xylose-proton symport 96.9 0.023 7.8E-07 58.0 16.2 127 271-414 60-186 (491)
14 2cfq_A Lactose permease; trans 93.0 0.012 3.9E-07 59.3 -1.4 84 36-125 314-398 (417)
No 1
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.88 E-value=1.7e-22 Score=213.00 Aligned_cols=399 Identities=20% Similarity=0.296 Sum_probs=231.7
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++++.++|.|+..|+..++++|++++++ |....+.|++++.+.++|.+++|.+++++.++.||++.|++.
T Consensus 108 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~ 184 (524)
T 2xut_A 108 SVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIP 184 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccccchhHHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 56778999999999999999999999999998643 223467888999999999999999999999889999999999
Q ss_pred hHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCccccccccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKAA 192 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~ 192 (484)
++..+++.+.++..++.+++.+|++++.....+.+..+.+++..+.+ ... ................+.+....+..+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (524)
T 2xut_A 185 GVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKG-NIG-LVLALIGGVSAAYALVNIPTLGIVAGLC 262 (524)
T ss_dssp HHHHHHHHHHHHSSSSSCCCCC--------------------CTTHH-HHH-HHHHHHHHHHHHHTGGGTTTTCSSHHHH
T ss_pred HHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccC-ccc-hhhhhhhhhhhhhhhcccchhhhhhhhh
Confidence 98888877776655554433333333222222222222222110000 000 0000000000000000000000000000
Q ss_pred ccCCccccccCCCCCCCc-------ccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc
Q 011513 193 IMTPEDQIKSDGSAINPW-------RLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK 265 (484)
Q Consensus 193 i~~~~~~~~~~g~~~~~~-------~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~ 265 (484)
+..... .+.. ...+| +..++.+.+++|+.+...+++.....++..+.|..+.+..+..+++... +
T Consensus 263 ~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 334 (524)
T 2xut_A 263 CAMVLV-MGFV--GAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ----W- 334 (524)
T ss_dssp HHHHHH-HHHH--HTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS----S-
T ss_pred hhhhhh-hccc--ccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe----e-
Confidence 000000 0000 00011 0011112345566666777778888888888888887766666655331 1
Q ss_pred ccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCccccc
Q 011513 266 IPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQR 345 (484)
Q Consensus 266 i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 345 (484)
++.+.+..++.+..++..|+.+++..|.++|.. +++++.+++.+|+++.+++++..++.+..+ .
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~-------- 398 (524)
T 2xut_A 335 FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMG---VKLTALRKMGAGIAITGLSWIVVGTIQLMM-----D-------- 398 (524)
T ss_dssp SCHHHHHTTSGGGHHHHGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTT-----T--------
T ss_pred ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcC---CCCChHHHHHHHHHHHHHHHHHHHHHHHHh-----c--------
Confidence 356777888888899999999988767666542 235677788899999988888766543210 0
Q ss_pred CCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513 346 RGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDW 425 (484)
Q Consensus 346 ~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w 425 (484)
.....+.+|+++.+++.++++.+..+...+++.+.+|+++||.++|+++...++|+.+|+.+.+.+.+.++ .+|
T Consensus 399 --~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~----~~~ 472 (524)
T 2xut_A 399 --GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTV----TEQ 472 (524)
T ss_dssp --TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHH----HHH
T ss_pred --CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc----ccc
Confidence 01235677888999999999999999999999999999999999999999999999999999988764321 123
Q ss_pred CCc-CccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCC
Q 011513 426 LPE-DLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGDG 468 (484)
Q Consensus 426 ~~~-~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~~ 468 (484)
.++ +++. ..+.|++.+++++++.++++++.+++++++++++
T Consensus 473 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (524)
T 2xut_A 473 IVQTGMSV--TAFQMFFFAGFAILAAIVFALYARSYQMQDHYRQ 514 (524)
T ss_dssp HHHHHSCH--HHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccccccc--cccHHHHHHHHHHHHHHHHHHHHHHhccchhhhh
Confidence 221 1221 1233778888888888888888888776655443
No 2
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.84 E-value=1.3e-19 Score=189.22 Aligned_cols=357 Identities=15% Similarity=0.206 Sum_probs=228.2
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchhh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGIP 112 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~ 112 (484)
+...+++++++.++|.|...|+..++++|++++++ +.+..++++++.+.++|.+++|.+++++.++.||++.|.+.
T Consensus 107 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~ 182 (491)
T 4aps_A 107 GASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLA 182 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45678899999999999999999999999998643 22467899999999999999999999999989999999999
Q ss_pred hHHHHHHHHHHHhccceeeecC--CCCCch--hhHHHHHHH--------------HHHhccccCCCCCccccccCCCccc
Q 011513 113 AFMMFLSCAMFFLGSRLYAKVK--PEGSPL--ASTVQVFVA--------------AIKKRHLKLPEEPWLTLHNHIPKNC 174 (484)
Q Consensus 113 ~~~~~l~~i~~l~~~~~~~~~~--p~~~pl--~~~~~vl~~--------------a~~~~~~~~~~~~~~~~~~~~~~~~ 174 (484)
++..+++++++++..+++.+++ +..++. ....+.... ........ ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~---------~~------ 247 (491)
T 4aps_A 183 AIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS---------LP------ 247 (491)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC---------TT------
T ss_pred HHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc---------cc------
Confidence 8888888777655444332211 111111 111110000 00000000 00
Q ss_pred cCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHh
Q 011513 175 INSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQ 254 (484)
Q Consensus 175 ~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~ 254 (484)
+................. ...|+. ......++++.....++++....++..+.+..+.+..+..+
T Consensus 248 --------~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (491)
T 4aps_A 248 --------AYINLLTIVAIAIPVFYF------AWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAE 312 (491)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------HHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHH
T ss_pred --------cchhhhhHHHHHHHHHHH------HHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 000000000000000000 000000 00112445666667888888889999998888765444432
Q ss_pred -cCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 255 -SDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRS 333 (484)
Q Consensus 255 -~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~ 333 (484)
.+... .+.+.+..++.+..++..++.+++. +|+++| .+....++.+|+++.+++++...+.....
T Consensus 313 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~----~r~~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 378 (491)
T 4aps_A 313 RVDSSW------FPVSWFQSLNPLFIMLYTPFFAWLW----TAWKKN--QPSSPTKFAVGLMFAGLSFLLMAIPGALY-- 378 (491)
T ss_dssp SCCCSS------SCSGGGTTHHHHHHHHHHHHHHHHH----HHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHC--
T ss_pred HhccCc------cCHHHHhccchHHHHHHHHHHHHHH----HHHhcc--CCCchHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 33221 4577888999999999999988863 454433 35667889999999999998887765320
Q ss_pred hhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhh
Q 011513 334 LALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMV 413 (484)
Q Consensus 334 ~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~ 413 (484)
+ .....+.+|+++.+++.++|+.+..|...+++.+..|++.||.++|+++....+|..+++.+.+.+
T Consensus 379 -----~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~ 445 (491)
T 4aps_A 379 -----G--------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLY 445 (491)
T ss_dssp -----C--------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGG
T ss_pred -----C--------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 012456778889999999999999999999999999999999999999999999999999998876
Q ss_pred cccccCCCCCCCCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcccccCCCC
Q 011513 414 HRFTKGASTGDWLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYKYKGSGD 467 (484)
Q Consensus 414 ~~~~~~~~~~~w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~~~~~~~ 467 (484)
.+.. ....|..+++++++..++++++.++.+++.+++
T Consensus 446 ~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (491)
T 4aps_A 446 NAKS-----------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQGV 482 (491)
T ss_dssp GGSS-----------------TTHHHHHTHHHHHHHHHHHHHC-----------
T ss_pred hccc-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5321 235677788888888887777777776654443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.52 E-value=1.8e-13 Score=140.37 Aligned_cols=315 Identities=10% Similarity=-0.027 Sum_probs=181.1
Q ss_pred hHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeeccc-ccccchh
Q 011513 33 QLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVS-WAWGLGI 111 (484)
Q Consensus 33 ~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g-~~~~F~i 111 (484)
+...+++++++.++|.|...|...++++|.+++++ |.++++++..+.++|.++++.+++++.+.+| |++.|++
T Consensus 118 ~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~ 191 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 191 (451)
T ss_dssp SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHH
T ss_pred cHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 45578899999999999999999999999998531 4679999999999999999999999878788 9999999
Q ss_pred hhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccccccCCCccccCCCCCCCCcccccccc
Q 011513 112 PAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLTLHNHIPKNCINSKLPHTGQFRCLDKA 191 (484)
Q Consensus 112 ~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 191 (484)
.++..++..++.++..+. +|+.... .+..+.... .+.+ . ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~----~~~~~~~---------------~~~~~~~~~--~~~~----------------~-~~~ 233 (451)
T 1pw4_A 192 PAFCAILVALFAFAMMRD----TPQSCGL---------------PPIEEYKND--YPDD----------------Y-NEK 233 (451)
T ss_dssp HHHHHHHHHHHHHHHCCC----SSTTTCC---------------CSCTTTCCC---------------------------
T ss_pred HHHHHHHHHHHHHhhccC----CHhhcCC---------------CChhhhccc--cccc----------------c-hhh
Confidence 888777666554332221 1111000 000000000 0000 0 000
Q ss_pred cccCCccccccCCCCCCCcccCcchhHHHHHHhHhhHHHHHHHHHHHHHHhchhhHHHHHHHhcCCCCCCcccc-ccccc
Q 011513 192 AIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLIRVIPIWASAIVYYVALVQQQTYVVFQALQSDRRVGNTHFK-IPAAS 270 (484)
Q Consensus 192 ~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~~~l~l~~~~~~~~~~~~q~~t~~~~q~~~~~~~~g~~g~~-i~~~~ 270 (484)
. ... ..+ ++....+..+-..+..+.+.....+..+....+.+ ...+....| +. ...+.
T Consensus 234 ~---------~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g---~~~~~~~~ 292 (451)
T 1pw4_A 234 A---------EQE---LTA---KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS---PTYLKEVKH---FALDKSSW 292 (451)
T ss_dssp -----------------CC---THHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHH---HHHBTTBSC---CCHHHHHH
T ss_pred h---------hcc---ccc---ccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcC---CCHHHHHH
Confidence 0 000 000 00000000000111222222223333222222211 222222222 11 11245
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccCCCcccccCCCC
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAI-FTMIISGIIEDKRRSLALSRPVGLEQRRGAI 349 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~-i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 349 (484)
+.++..+..++..++.+++ .+|+.+ ...+.+.++.++.+ ++++...+.
T Consensus 293 ~~~~~~~~~~~~~~~~g~l----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 341 (451)
T 1pw4_A 293 AYFLYEYAGIPGTLLCGWM----SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN---------------------- 341 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC----------------------
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh----------------------
Confidence 5666666667766666664 334210 12223444444443 444433221
Q ss_pred ccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHH-HHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 350 SSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAI-SNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 350 ~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~i-G~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
...+.++.+...++.|++.....+....++.+..|++.||.++|+++....+ |..+++.+.+.+.+.. +
T Consensus 342 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g---- 411 (451)
T 1pw4_A 342 PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------G---- 411 (451)
T ss_dssp CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------C----
T ss_pred cccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C----
Confidence 0124555666677888888888888889999999999999999999999999 9999999998876432 1
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhhc
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAKW 459 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~ 459 (484)
+...|++.++++++..+++++..++
T Consensus 412 ------~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 412 ------WDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456777777777777666655443
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.23 E-value=4.5e-10 Score=114.54 Aligned_cols=263 Identities=14% Similarity=0.049 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeee-eccc------
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQ-SDVS------ 104 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~-~~~g------ 104 (484)
.+.+.+++++++.++|.|...|...++++|.+++++ |.++++++..+.++|.++++.+++++. +..+
T Consensus 115 ~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~ 188 (438)
T 3o7q_A 115 MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDV 188 (438)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHH
T ss_pred ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 356788999999999999999999999999998632 356789999999999999999999987 5444
Q ss_pred -------------------ccccchhhhHHHHHHHHHHHhccceeeecCCCCCchhhHHHHHHHHHHhccccCCCCCccc
Q 011513 105 -------------------WAWGLGIPAFMMFLSCAMFFLGSRLYAKVKPEGSPLASTVQVFVAAIKKRHLKLPEEPWLT 165 (484)
Q Consensus 105 -------------------~~~~F~i~~~~~~l~~i~~l~~~~~~~~~~p~~~pl~~~~~vl~~a~~~~~~~~~~~~~~~ 165 (484)
|++.|.+.++..++..++++.. + .|+..+ ++. . +++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~----~p~~~~-------------~~~---~-~~~-- 243 (438)
T 3o7q_A 189 LDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT--K----FPALQS-------------DNH---S-DAK-- 243 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--C----CCCCTT-------------TCC---C-CSS--
T ss_pred cccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH--c----CCcccc-------------ccc---c-ccc--
Confidence 8999987766666555544331 1 111110 000 0 000
Q ss_pred cccCCCccccCCCCCCCCcccccccccccCCccccccCCCCCCCcccCcchhHHHHHHhH---hhHHHHHHHHHHHHHHh
Q 011513 166 LHNHIPKNCINSKLPHTGQFRCLDKAAIMTPEDQIKSDGSAINPWRLSSMQKVEEVKVLI---RVIPIWASAIVYYVALV 242 (484)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~l~~a~i~~~~~~~~~~g~~~~~~~~~~~~~v~~~k~~~---~~l~l~~~~~~~~~~~~ 242 (484)
. +...++.+.++ .+....+....+...+.
T Consensus 244 -------------------------------------~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T 3o7q_A 244 -------------------------------------Q-----------GSFSASLSRLARIRHWRWAVLAQFCYVGAQT 275 (438)
T ss_dssp -------------------------------------T-----------TSHHHHHHHHTTCSHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------c-----------cchhhhHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 0 00001111111 11111222222222221
Q ss_pred chhhHHHHH--HHhcCCCCCCccccccccccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHH
Q 011513 243 QQQTYVVFQ--ALQSDRRVGNTHFKIPAASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFT 320 (484)
Q Consensus 243 q~~t~~~~q--~~~~~~~~g~~g~~i~~~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~ 320 (484)
...+..... .+....+ ....+.+..+..+..++..++..++ .+|+ ...+-+.++.++.+++
T Consensus 276 ~~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~ 338 (438)
T 3o7q_A 276 ACWSYLIRYAVEEIPGMT------AGFAANYLTGTMVCFFIGRFTGTWL----ISRF-------APHKVLAAYALIAMAL 338 (438)
T ss_dssp HHHHHHHHHHHHHSTTCC------HHHHHHHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCcc------hhHHHHHHHHHHHHHHHHHHHHHHH----HHHh-------cchHHHHHHHHHHHHH
Confidence 111111111 1111111 0113444555556666666666664 3442 2223455666666666
Q ss_pred HHHHHHHHHHhhhhhccCCCcccccCCCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHH
Q 011513 321 MIISGIIEDKRRSLALSRPVGLEQRRGAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFA 400 (484)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~ 400 (484)
++...+.. +. +.+...++.+++.....|...++..+..|++ ++..+++.. ...
T Consensus 339 ~~~~~~~~------------------------~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~ 391 (438)
T 3o7q_A 339 CLISAFAG------------------------GH-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTI 391 (438)
T ss_dssp HHHHHHCC------------------------HH-HHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTT
T ss_pred HHHHHHcC------------------------Cc-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHH
Confidence 55544321 11 2334457888888888999999999999988 888888766 566
Q ss_pred HHHHHHHHHhHhhcccc
Q 011513 401 ISNYLNGFLISMVHRFT 417 (484)
Q Consensus 401 iG~~lg~~l~~~~~~~~ 417 (484)
+|..+++.+.+.+.+..
T Consensus 392 ~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 392 IGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999988876543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.08 E-value=3e-11 Score=120.97 Aligned_cols=84 Identities=7% Similarity=0.008 Sum_probs=72.5
Q ss_pred hhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeecccccccchh
Q 011513 32 WQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSDVSWAWGLGI 111 (484)
Q Consensus 32 ~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i 111 (484)
.+...+++++.+.++|.+...|...+++.|.+++++ |.++++++..+.++|..++|.+++++.+++||++.|.+
T Consensus 86 ~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 159 (375)
T 2gfp_A 86 SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLF 159 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHH
Confidence 356788899999999999999999999999998532 35688899999999999999999999998899999988
Q ss_pred hhHHHHHHHH
Q 011513 112 PAFMMFLSCA 121 (484)
Q Consensus 112 ~~~~~~l~~i 121 (484)
.++..++..+
T Consensus 160 ~~~~~~~~~~ 169 (375)
T 2gfp_A 160 LLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 8777666654
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.82 E-value=4e-08 Score=101.75 Aligned_cols=85 Identities=11% Similarity=0.085 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHHHHHhhhHHHHHHhhhheeeeec--------
Q 011513 31 PWQLAFLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNWYYFTFTFAMMISLTVIVYVQSD-------- 102 (484)
Q Consensus 31 ~~~~~~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~~Y~~iNiG~~i~~~l~~~l~~~-------- 102 (484)
..+...+++++++.|+|.|+..|....+++|..|++ + |.....++..+..+|.+++..++..+...
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~---~---rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAH---I---RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNT 196 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGG---G---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH---h---hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccc
Confidence 457889999999999999999999999999998853 2 45677788899999999988876555332
Q ss_pred ccccccchhhhHHHHHHHH
Q 011513 103 VSWAWGLGIPAFMMFLSCA 121 (484)
Q Consensus 103 ~g~~~~F~i~~~~~~l~~i 121 (484)
.+|++.+.+..+..++..+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~ 215 (491)
T 4gc0_A 197 DGWRYMFASECIPALLFLM 215 (491)
T ss_dssp THHHHHHHTTHHHHHHHHH
T ss_pred hhhHHHhhhhhhhhhhhhh
Confidence 3466666665555444443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.74 E-value=8.8e-09 Score=105.03 Aligned_cols=139 Identities=11% Similarity=0.012 Sum_probs=89.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+.+.+++.+..++..++..++ .+|.+ ..+.+.+|.++.+++++..++.
T Consensus 262 g~~~~~~~~~~~~~~~~~g~l----~dr~g-------~~~~l~~~~~~~~~~~~~~~~~--------------------- 309 (417)
T 2cfq_A 262 GYVTTMGELLNASIMFFAPLI----INRIG-------GKNALLLAGTIMSVRIIGSSFA--------------------- 309 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHC-------HHHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhc-------HHHHHHHHHHHHHHHHHHHHHh---------------------
Confidence 344556666656666666654 34432 2233556666666655443221
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh-HHHHHHHHHHHHHHHhHhhcccccCCCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL-AFVGFAISNYLNGFLISMVHRFTKGASTGDWLP 427 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl-~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~ 427 (484)
.+.++++...++.+++.....+....++.+..|++.||..+|+ ++...++|+.+++.+++.+.+..
T Consensus 310 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~---------- 376 (417)
T 2cfq_A 310 ---TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI---------- 376 (417)
T ss_dssp ---CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------
T ss_pred ---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------
Confidence 1233444445566777666667778899999999999999998 57788899999999988765321
Q ss_pred cCccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 428 EDLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 428 ~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
.+...|.+.++++++..++.++..|
T Consensus 377 ------g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 377 ------GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1345677777777777766655444
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.51 E-value=5.1e-06 Score=84.24 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=91.3
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+..++..|+.+++. +|+ ...+-+.+|.++.+++.+.......
T Consensus 64 g~~~~~~~~~~~i~~~~~G~l~----dr~-------g~r~~l~~~~~~~~~~~~~~~~~~~------------------- 113 (438)
T 3o7q_A 64 GLIQSAFYFGYFIIPIPAGILM----KKL-------SYKAGIITGLFLYALGAALFWPAAE------------------- 113 (438)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHH----HHS-------CHHHHHHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HHh-------cchHHHHHHHHHHHHHHHHHHhccc-------------------
Confidence 5666777777788888877763 443 2334577888888888877644321
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.++++...++.|+|.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 114 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 --IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred --cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1356677888899999999999999999999999999999999999999999999999988775
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.48 E-value=4.3e-06 Score=85.02 Aligned_cols=144 Identities=15% Similarity=0.064 Sum_probs=103.5
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+...+..|+.+++. +|++ ..+-+.+|.++.+++.+..++....
T Consensus 65 g~~~~~~~~~~~~~~~~~G~l~----dr~g-------~r~~l~~~~~~~~~~~~~~~~~~~~------------------ 115 (451)
T 1pw4_A 65 GFALSGISIAYGFSKFIMGSVS----DRSN-------PRVFLPAGLILAAAVMLFMGFVPWA------------------ 115 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHSC-------HHHHHHHHHHHHHHHHHHHHHCHHH------------------
T ss_pred HHHHHHHHHHHHHHHHhHHHHH----HhcC-------chHHHHHHHHHHHHHHHHHHhhhhc------------------
Confidence 5667777777788888877753 4432 2344778888888888877662210
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCCCCCc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGDWLPE 428 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w~~~ 428 (484)
..+.++++...++.|++.....+...+++.+..|++.|+..+|++....++|..+++.+++.+.... ++|
T Consensus 116 --~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-----g~w--- 185 (451)
T 1pw4_A 116 --TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-----NDW--- 185 (451)
T ss_dssp --HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-----CCS---
T ss_pred --cccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccH---
Confidence 0234567778899999999999999999999999999999999999999999999999987754322 024
Q ss_pred CccCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 011513 429 DLNKGRLDYFYYLVAALGLLNFGFFLLCAK 458 (484)
Q Consensus 429 ~ln~~~~~~~f~~la~l~~~~~i~~~~~~~ 458 (484)
...|++.++++++..++..+..+
T Consensus 186 -------~~~f~~~~~~~~~~~~~~~~~~~ 208 (451)
T 1pw4_A 186 -------HAALYMPAFCAILVALFAFAMMR 208 (451)
T ss_dssp -------TTCTHHHHHHHHHHHHHHHHHCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 22455566666665555444433
No 10
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.27 E-value=2.2e-05 Score=80.92 Aligned_cols=143 Identities=14% Similarity=0.131 Sum_probs=104.4
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHhhhhh-hhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccC
Q 011513 268 AASYAIFSMLGLTIWIPIYDRIIVPRLQR-LTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRR 346 (484)
Q Consensus 268 ~~~~~~~n~~~iii~~pl~~~~~~pl~~k-~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 346 (484)
.+++.+...+...+..|+.+++. +| ++ ..+-+.+|.++.+++.+..++.
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~----dr~~g-------~r~~~~~~~~~~~~~~~~~~~~------------------- 105 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVA----DRIIG-------ARPAVFWGGVLIMLGHIVLALP------------------- 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHTSC-------HHHHHHHHHHHHHHHHHHHHSC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hcccc-------chHHHHHHHHHHHHHHHHHHHh-------------------
Confidence 35667777788888888888764 34 22 2234667777777777665432
Q ss_pred CCCccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchh--hhhHHhhHHHHHHHHHHHHHHHhHhhcccccCCCCCC
Q 011513 347 GAISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENM--RSIGGSLAFVGFAISNYLNGFLISMVHRFTKGASTGD 424 (484)
Q Consensus 347 ~~~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~--~g~~~gl~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~ 424 (484)
.+.++++...++.|+|+....|....++.+..|++. |+..+++++...++|..+++.+++.+.+.. +
T Consensus 106 -----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~------g 174 (491)
T 4aps_A 106 -----FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA------G 174 (491)
T ss_dssp -----CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------C
T ss_pred -----hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh------h
Confidence 234566778899999999999999999999999988 888888899999999999999998875422 2
Q ss_pred CCCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhccc
Q 011513 425 WLPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWYK 461 (484)
Q Consensus 425 w~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~~ 461 (484)
| ...|++.+++.++..+++.+..+++.
T Consensus 175 ~----------~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 175 Y----------HVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 3 44566666666666666665555543
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.13 E-value=1.6e-05 Score=78.98 Aligned_cols=111 Identities=14% Similarity=0.173 Sum_probs=88.0
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.++..+...+..|+.+++ .+|+++| +-+.+|.++.+++.+..++.+
T Consensus 38 g~~~~~~~~~~~~~~~~~g~l----~dr~g~r-------~~~~~~~~~~~~~~~~~~~~~-------------------- 86 (375)
T 2gfp_A 38 QSVMGAYLLTYGVSQLFYGPI----SDRVGRR-------PVILVGMSIFMLATLVAVTTS-------------------- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHTTHHHH----HTTSCCC-------CCCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhCCc-------hhHHHHHHHHHHHHHHHHHhc--------------------
Confidence 466677777778888887775 3454322 224577777777777766542
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
+.++++...++.|++.....+....++.+..|++.|+..+|++....++|..+++.+++.+.
T Consensus 87 ----~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 87 ----SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred ----cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 35567778899999999999999999999999999999999999999999999999988765
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=5.4e-05 Score=78.82 Aligned_cols=143 Identities=13% Similarity=0.116 Sum_probs=99.8
Q ss_pred cccchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCC
Q 011513 269 ASYAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGA 348 (484)
Q Consensus 269 ~~~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 348 (484)
+++.+...+..++..++.+++. +|+ ....+-+.+|.++.+++.+..++..
T Consensus 57 g~~~~~~~~~~~~~~~~~G~l~----dr~------~g~r~~~~~~~~~~~~~~~~~~~~~-------------------- 106 (524)
T 2xut_A 57 KDVFHSFVIGVYFFPLLGGWIA----DRF------FGKYNTILWLSLIYCVGHAFLAIFE-------------------- 106 (524)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHH----TTS------SCSHHHHHHHHHHHHHHHHHHHHTS--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHH------hcchHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence 4556666667777777777753 332 0233446677877777777665431
Q ss_pred CccchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhh---HHHHHHHHHHHHHHHhHhhcccccCCCCCCC
Q 011513 349 ISSLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSL---AFVGFAISNYLNGFLISMVHRFTKGASTGDW 425 (484)
Q Consensus 349 ~~~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl---~~l~~~iG~~lg~~l~~~~~~~~~~~~~~~w 425 (484)
.+.++++...++.|+|+....|...+++.+..|++.|+..+++ +....++|..+++.+++.+.+.. +|
T Consensus 107 ---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~------g~ 177 (524)
T 2xut_A 107 ---HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF------GA 177 (524)
T ss_dssp ---SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS------CH
T ss_pred ---ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------cH
Confidence 2456677788999999999999999999999999999877666 88889999999999887765321 23
Q ss_pred CCcCccCchhHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011513 426 LPEDLNKGRLDYFYYLVAALGLLNFGFFLLCAKWY 460 (484)
Q Consensus 426 ~~~~ln~~~~~~~f~~la~l~~~~~i~~~~~~~~~ 460 (484)
...|++.+++.++..+++.+..+++
T Consensus 178 ----------~~~f~~~~~~~~~~~~~~~~~~~~~ 202 (524)
T 2xut_A 178 ----------AVAFGIPGVLMFVATVFFWLGRKRY 202 (524)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556666666666655554443333
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=96.86 E-value=0.023 Score=58.02 Aligned_cols=127 Identities=10% Similarity=-0.004 Sum_probs=83.1
Q ss_pred cchhhHHHHHHHHHHHhHHHHhhhhhhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCcccccCCCCc
Q 011513 271 YAIFSMLGLTIWIPIYDRIIVPRLQRLTKKEGGITILQRMAIGMILAIFTMIISGIIEDKRRSLALSRPVGLEQRRGAIS 350 (484)
Q Consensus 271 ~~~~n~~~iii~~pl~~~~~~pl~~k~~~~~~~~s~~~ki~iG~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 350 (484)
+.+...+..++..++.+++ -+|+++ .+-+.++.++..++-+..++............ ......
T Consensus 60 ~~s~~~~G~~iG~~~~G~l----aDr~GR-------k~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~------~~~~~~ 122 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYC----SNRFGR-------RDSLKIAAVLFFISGVGSAWPELGFTSINPDN------TVPVYL 122 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHH----HHHTCH-------HHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSS------SCCGGG
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHhcC-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhcchh------HHHHHH
Confidence 3344444555555555554 344432 23366777777776666554321000000000 000011
Q ss_pred cchHHHHHHHHHHHHhHHHHHHhHHHHHhhcccCchhhhhHHhhHHHHHHHHHHHHHHHhHhhc
Q 011513 351 SLSGLWLIPQLSLIGFSEAFTIIAEVEFYYKQFPENMRSIGGSLAFVGFAISNYLNGFLISMVH 414 (484)
Q Consensus 351 ~~s~~~li~~~~l~~igE~l~~p~~~~~~~~~aP~~~~g~~~gl~~l~~~iG~~lg~~l~~~~~ 414 (484)
..+.+.++...++.|+|+....+....++.+.+|++.|+..++++.....+|..++..++....
T Consensus 123 a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 123 AGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 3456778889999999999999999999999999999999999999999999999888876654
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=92.97 E-value=0.012 Score=59.33 Aligned_cols=84 Identities=7% Similarity=0.004 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcccCCcccchhhhccCCCCCCcCCccchhhhHHH-HHHhhhHHHHHHhhhheeeeecccccccchhhhH
Q 011513 36 FLFTGLGLMVIGAGGIRPCNLAFGADQFNPNTESGKQGITSFFNW-YYFTFTFAMMISLTVIVYVQSDVSWAWGLGIPAF 114 (484)
Q Consensus 36 ~~~~~l~li~~G~g~~kp~~~a~~~d~~~~~~~~~~~~~~~~f~~-~Y~~iNiG~~i~~~l~~~l~~~~g~~~~F~i~~~ 114 (484)
.+.+...+.+++.+.+.+...++..|.+|++ .+..++.+ +..+.++|.+++|.++|++.++.|+...|.+.++
T Consensus 314 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~------~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~ 387 (417)
T 2cfq_A 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVR------FSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHSCHH------HHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------HHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHH
Confidence 4445555566666666666778888888752 13456666 3567779999999999999888899999998888
Q ss_pred HHHHHHHHHHh
Q 011513 115 MMFLSCAMFFL 125 (484)
Q Consensus 115 ~~~l~~i~~l~ 125 (484)
..+++.++.+.
T Consensus 388 ~~l~~~~~~~~ 398 (417)
T 2cfq_A 388 VALGFTLISVF 398 (417)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 87877766543
Done!