Query 011514
Match_columns 484
No_of_seqs 485 out of 1342
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 09:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 2.9E-37 1E-41 308.0 34.2 388 9-467 29-432 (451)
2 3o7q_A L-fucose-proton symport 100.0 5.2E-36 1.8E-40 297.8 42.4 353 8-442 26-413 (438)
3 4gc0_A D-xylose-proton symport 100.0 2.7E-34 9.3E-39 289.8 24.8 415 15-472 19-466 (491)
4 4aps_A DI-OR tripeptide H+ sym 100.0 5.1E-32 1.7E-36 273.2 31.3 405 7-468 12-471 (491)
5 2gfp_A EMRD, multidrug resista 100.0 2E-33 6.9E-38 273.4 16.8 342 11-437 3-353 (375)
6 2cfq_A Lactose permease; trans 100.0 1.6E-30 5.6E-35 256.4 18.6 384 7-470 6-401 (417)
7 2xut_A Proton/peptide symporte 100.0 1.9E-27 6.6E-32 241.7 23.5 386 6-436 10-467 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 5.4E-13 1.8E-17 132.2 22.1 176 246-470 28-209 (451)
9 4aps_A DI-OR tripeptide H+ sym 99.5 5E-13 1.7E-17 134.2 21.1 174 246-466 13-194 (491)
10 3o7q_A L-fucose-proton symport 99.5 1.9E-12 6.5E-17 127.8 20.0 147 249-435 29-178 (438)
11 2xut_A Proton/peptide symporte 99.5 1.4E-12 4.7E-17 132.1 18.4 175 245-466 11-196 (524)
12 2cfq_A Lactose permease; trans 99.4 7.9E-12 2.7E-16 122.6 17.9 164 25-196 237-405 (417)
13 2gfp_A EMRD, multidrug resista 99.4 1.5E-12 5.3E-17 125.7 10.4 165 251-463 5-169 (375)
14 4gc0_A D-xylose-proton symport 99.2 6E-10 2E-14 111.6 17.6 143 54-198 315-470 (491)
15 2g9p_A Antimicrobial peptide l 34.9 9.5 0.00033 18.9 0.2 13 71-83 3-15 (26)
16 3mkt_A Multi antimicrobial ext 24.7 4.2E+02 0.015 24.6 35.8 29 129-157 145-173 (460)
17 2dw3_A Intrinsic membrane prot 20.7 1.8E+02 0.0061 19.7 4.5 32 169-200 32-63 (77)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2.9e-37 Score=307.95 Aligned_cols=388 Identities=12% Similarity=0.079 Sum_probs=300.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514 9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL 88 (484)
Q Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~ 88 (484)
.+..+++..++..++.....+.+|.+.+++ .+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 99 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG---------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL 99 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSST---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence 445566677777777788888888776432 33345699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514 89 TLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (484)
Q Consensus 89 ~~~~i~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 164 (484)
++.+++.+++++ +++ ++.++++|+++|++. +...+...+++.|++|+++|++++++.+...++|.++||.++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHh-hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 888 788899999999765 777789999999999999999999999999999999999988
Q ss_pred Hh----hh-hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH-
Q 011514 165 RF----LS-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL- 238 (484)
Q Consensus 165 ~~----l~-~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 238 (484)
+. .+ ||++|++.+++.++..++.++.+||++++.+.+++++.... ..++. . +.+++..+.++.
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~---~~~~~~~~~~~~~ 244 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------YPDDY-N---EKAEQELTAKQIF 244 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------CCTHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-------ccccc-h---hhhhcccccccch
Confidence 76 46 99999999988888877777888987765433211110000 00000 0 000111122222
Q ss_pred HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchHHH
Q 011514 239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL 316 (484)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~ 316 (484)
.+...++|.++...+..++..........+.|.|+++.+|+++.+.+...+..+++..++. ++.+++.||+ ++|+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~ 323 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGAT 323 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhH
Confidence 3446778889988888888888888899999999999889999999999999999999998 7779999999 999888
Q ss_pred HHhHHHHH-HHHHHHhhccc--hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514 317 SLGLFAAC-INMFICSISWS--AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP 393 (484)
Q Consensus 317 ~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 393 (484)
..+..+.. ++++.+.+.++ .+. ......+.|++.+...+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~ 365 (451)
T 1pw4_A 324 GVFFMTLVTIATIVYWMNPAGNPTV--------------------------------------DMICMIVIGFLIYGPVM 365 (451)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHH--------------------------------------HHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCHHH--------------------------------------HHHHHHHHHHHHhchHH
Confidence 77776665 66666655532 222 13444567777778888
Q ss_pred HHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514 394 SFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM 467 (484)
Q Consensus 394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (484)
...++..|.+|+++||++.|+.+...++ |..++|.+.|.+.+.. ++.. .|.+.+++.+++.+....
T Consensus 366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG-------GFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH-------HHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999 9999999999999975 4433 445555555555544443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.2e-36 Score=297.79 Aligned_cols=353 Identities=13% Similarity=0.088 Sum_probs=289.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514 8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP 87 (484)
Q Consensus 8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~ 87 (484)
+.+..++...++..+..+...+.+|.+.+++ +.+..+.|++.+.+.++..++++++|+++||+|||++++.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~ 97 (438)
T 3o7q_A 26 IPFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG 97 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence 3455566677788888889999999988776 34445679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH---HhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514 88 LTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA 164 (484)
Q Consensus 88 ~~~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~ 164 (484)
.++.+++.+++ .++++ ++.+++.|++.|++. +...+...++++|++|+|+|++++++.+...++|..+||.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 173 (438)
T 3o7q_A 98 LFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG 173 (438)
T ss_dssp HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcccccc---HHHHHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 88899 899999999999765 777789999999999999999999999999999999999998
Q ss_pred Hhhh------------------------------hHHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCCCCCCCccccccc
Q 011514 165 RFLS------------------------------TTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETE 213 (484)
Q Consensus 165 ~~l~------------------------------~~~~f~~~~~~~~i~~~~~~~-~lpe~~~~~~~~~~~~~~~~~~~~ 213 (484)
+.+. ||++|++.+.+..+..+..++ ..||++++++++
T Consensus 174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------ 241 (438)
T 3o7q_A 174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------ 241 (438)
T ss_dssp THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence 7754 999998877666655554433 123332211110
Q ss_pred ccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHH-HhhhcCcChhhHHHHHHHHH
Q 011514 214 GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAG 292 (484)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~ 292 (484)
++.++.++..+.+.++|.++...+..++..........+.|.| +++.+|+++.+.+...+...
T Consensus 242 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 305 (438)
T 3o7q_A 242 ----------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM 305 (438)
T ss_dssp ----------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred ----------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence 0112333445557788999999888888888888888999999 88888999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 011514 293 LAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKS 372 (484)
Q Consensus 293 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 372 (484)
++..++. ++.+++.||+++|+.+..+..+..++++.+.+.++.+.
T Consensus 306 ~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 350 (438)
T 3o7q_A 306 VCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG---------------------------------- 350 (438)
T ss_dssp HHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH----------------------------------
T ss_pred HHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH----------------------------------
Confidence 9999998 77799999999999999999888888887777665544
Q ss_pred hccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514 373 IFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA 442 (484)
Q Consensus 373 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~ 442 (484)
.+...+.+++.+...|...++..|..|++ ++++.++.. ...++..++|.+.|.+.|..+++..
T Consensus 351 -----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~ 413 (438)
T 3o7q_A 351 -----LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT 413 (438)
T ss_dssp -----HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGG
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34445778888888999999999999965 888888877 7789999999999999999732555
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=2.7e-34 Score=289.81 Aligned_cols=415 Identities=13% Similarity=0.081 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHH
Q 011514 15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP 94 (484)
Q Consensus 15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~ 94 (484)
++.++.+++.+.+.+.+|.+..++..+...+.+.+..+.|++.+.+.+|.+++++++|+++||+|||+++.++.++..++
T Consensus 19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~ 98 (491)
T 4gc0_A 19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS 98 (491)
T ss_dssp HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34566777778888888888777633333444666778899999999999999999999999999999999999999999
Q ss_pred HHHHHh------------------ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhH
Q 011514 95 LAILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS 156 (484)
Q Consensus 95 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 156 (484)
.+++++ +++ ++.++++|+++|++. |...+....+++|+.|+++|++..+..+.....|
T Consensus 99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~g~-G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g 174 (491)
T 4gc0_A 99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGIGV-GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG 174 (491)
T ss_dssp HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence 999984 667 899999999999866 7777899999999999999999999999999999
Q ss_pred HhHHHHhhHhh------------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCc
Q 011514 157 FVCGTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV 224 (484)
Q Consensus 157 ~~ig~~l~~~l------------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (484)
.++++.++... .||..+....+..++ .+...+++||+|++...+++.++.....++...+.+..+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~ 253 (491)
T 4gc0_A 175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV 253 (491)
T ss_dssp HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence 99988777542 477777776644444 44455679999876443332222221111100000000000
Q ss_pred cCcccCCCCchHH-HHHHhhccchhHHHHHHHHHHhc-hhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHH
Q 011514 225 KIPVCKKIPSIRD-LICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302 (484)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 302 (484)
.+..+...+..+. ......+.++.........+..+ .......+.+.+. +..+.+...........++...++. ++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 331 (491)
T 4gc0_A 254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLTFT-VL 331 (491)
T ss_dssp HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHHHH-HH
Confidence 0000000000000 01112233333333333333333 3334444444444 4457777776666677777777777 77
Q ss_pred HHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHH
Q 011514 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATT 382 (484)
Q Consensus 303 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (484)
.+++.||+|||+.+..+.....++++.+........ .... ......
T Consensus 332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~--------------~~~~~~ 377 (491)
T 4gc0_A 332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--------------------PGIV--------------ALLSML 377 (491)
T ss_dssp HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------CHHH--------------HHHHHH
T ss_pred HHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--------------------chHH--------------HHHHHH
Confidence 799999999999998888887777666543321111 0000 011111
Q ss_pred H-HHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHH
Q 011514 383 A-FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 461 (484)
Q Consensus 383 ~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (484)
+ .........|..+.+.+|.+|++.|+++.|+.+..+++++.+++.+.+.+.+..... .. ...+..|++.+++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-~~-~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-AH-FHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH-HH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hhhhHHHHHHHHHHHHH
Confidence 2 222223345677889999999999999999999999999999999888776542110 00 01122556666666666
Q ss_pred HHHHHHhccCC
Q 011514 462 FIQSLMMSHTP 472 (484)
Q Consensus 462 ~~~~~~~~~~~ 472 (484)
.++.++.-+|+
T Consensus 456 ~i~~~~~~PET 466 (491)
T 4gc0_A 456 ALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHCCCC
T ss_pred HHHHHheecCC
Confidence 66655444443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=5.1e-32 Score=273.18 Aligned_cols=405 Identities=14% Similarity=0.026 Sum_probs=280.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCchhHhH
Q 011514 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT 85 (484)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~ 85 (484)
+|.++.++...+...++.....+.++.+.++.. ..+|.+.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~ 89 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF 89 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 456777788888888888888888888887641 123346677788999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccc--hhHHHHHHHHHHHhHHhHHHHh
Q 011514 86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA 163 (484)
Q Consensus 86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l 163 (484)
.+.++.+++.++++++++ ++.+++.|+++|++. +...+...++++|++|+++ |+.++++.+...++|..+||.+
T Consensus 90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 90 WGGVLIMLGHIVLALPFG---ASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 999999999999999999 788899999999765 7777899999999999988 7778888999999999999998
Q ss_pred hHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccc-------------------cCCCCC
Q 011514 164 ARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-------------------VNQNES 220 (484)
Q Consensus 164 ~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~ 220 (484)
++. .+||++|++.++..++..+...+..|+..+++.++.+.+.......+. ..+..+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~ 245 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS 245 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 876 489999999887766665555544444332221111110000000000 000000
Q ss_pred CCCccCc---------------ccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHH
Q 011514 221 NSPVKIP---------------VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFA 285 (484)
Q Consensus 221 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 285 (484)
.++.... ..++. ... .+..++....+...+..++...........+|.|.++..+.+..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (491)
T 4aps_A 246 LPAYINLLTIVAIAIPVFYFAWMISSV-KVT--STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS 322 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred cccchhhhhHHHHHHHHHHHHHHhhcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence 0000000 00000 000 00011222344455555666666667778899999988888867778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH-----HhHHHHHHHHHHHhhcc---------chhhHHHhhhhHHHHHH
Q 011514 286 DLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVIKIFFNKVFKLLL 351 (484)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 351 (484)
......++...++. .+.+++.||++||+... .+..+.++++.++.... +.+.
T Consensus 323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 388 (491)
T 4aps_A 323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW------------- 388 (491)
T ss_dssp GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH-------------
T ss_pred HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH-------------
Confidence 88888888888887 66699999999876543 56666666655554422 1111
Q ss_pred HHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011514 352 LSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS 431 (484)
Q Consensus 352 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g 431 (484)
......+.+++.+...+...++..|..|++.||++.|+.+...++|..++|.+.+
T Consensus 389 -------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 389 -------------------------LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT 443 (491)
T ss_dssp -------------------------HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred -------------------------HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1444557788888888999999999999999999999999999999999999998
Q ss_pred HHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514 432 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM 468 (484)
Q Consensus 432 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (484)
.+.+. ++.. .|...+++.+++.+..+..
T Consensus 444 ~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 444 LYNAK--SEVA-------YFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp GGGGS--STTH-------HHHHTHHHHHHHHHHHHHC
T ss_pred HHhcc--cHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 88764 3332 3444444444444444433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=2e-33 Score=273.36 Aligned_cols=342 Identities=13% Similarity=0.077 Sum_probs=272.9
Q ss_pred HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514 11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL 90 (484)
Q Consensus 11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~ 90 (484)
..++...++..++.+...|.+|.+.+++ +.+..+.|++.+.+.++..++++++|+++||+|||+++..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL--------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS--------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 4567778888889999999999887554 45556779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----
Q 011514 91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---- 166 (484)
Q Consensus 91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~---- 166 (484)
.+++.++..++++ ++.+++.|++.|++. +...+...+++.|+.|+|+|+++++..+...++|..+||.+++.
T Consensus 75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 150 (375)
T 2gfp_A 75 FMLATLVAVTTSS---LTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM 150 (375)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999998 899999999999755 77778999999999999999999999999999999999999887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccc
Q 011514 167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV 246 (484)
Q Consensus 167 l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (484)
.+||+.|++.+++..+..+...+.+||++++++++ ++..++.++ ..++|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~ 199 (375)
T 2gfp_A 151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS 199 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence 38999999988777776665556677765432221 001122333 45567
Q ss_pred hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH-HHH
Q 011514 247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI 325 (484)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~ 325 (484)
.++...+..++..........+.|.|+++.+|+++.+.+...+...++..++. .+.+++.||.+++ ...+... ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 88888888888888888888899999999889999999999999999988888 6779999998872 2222222 111
Q ss_pred HHHH--Hhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514 326 NMFI--CSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK 401 (484)
Q Consensus 326 ~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 401 (484)
+... .... ++.+. ......+.+++.+...+...++..|
T Consensus 277 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~ 318 (375)
T 2gfp_A 277 GLLMWIPDWFGVMNVWT--------------------------------------LLVPAALFFFGAGMLFPLATSGAME 318 (375)
T ss_dssp SSSSSHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHTSSTTHHHHHT
T ss_pred HHHHHHHhhhccccHHH--------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1111 1110 01111 1344557778888889999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514 402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF 437 (484)
Q Consensus 402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~ 437 (484)
..| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus 319 ~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~ 353 (375)
T 2gfp_A 319 PFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG 353 (375)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred hCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998 89999999999999999999999999998764
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.97 E-value=1.6e-30 Score=256.40 Aligned_cols=384 Identities=15% Similarity=0.109 Sum_probs=248.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514 7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL 86 (484)
Q Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~ 86 (484)
+|+++.+....++...+.+...|.+|.+.++.+ |. +..+.|++.+.+.++..++++++|+++||+|||++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~-----s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~ 78 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN--HI-----SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW 78 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT--CC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 456677777778888888889999999987643 33 33345999999999999999999999999999999998
Q ss_pred HHHHHHHHH---HHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc--cchhHHHHHHHHHHHhHHhHHH
Q 011514 87 PLTLSIIPL---AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT 161 (484)
Q Consensus 87 ~~~~~~i~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~ 161 (484)
+..+.++.. ....+.+.. .......+.+.|+.. +...+.....+.++.++ ++|+...+..+...++|..++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~ 155 (417)
T 2cfq_A 79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGIYL-GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA 155 (417)
T ss_dssp HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGSST-THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence 887765532 211222210 011234556655433 33333344444444433 4566677888778888999999
Q ss_pred HhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH
Q 011514 162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238 (484)
Q Consensus 162 ~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (484)
.+++.+ +||.+|++.++..++..+. .+..||+++++.+++ +.+++ +++..+.++
T Consensus 156 ~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~-------~~~~~~~~~- 212 (417)
T 2cfq_A 156 SIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVA--------------NAVGA-------NHSAFSLKL- 212 (417)
T ss_dssp HHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSS--------------SSSSS-------CCCCCCHHH-
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCcccccccccc--------------ccccc-------ccccccHHH-
Confidence 888764 6899998776554333333 233333221111000 00000 000112222
Q ss_pred HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCc---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514 239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF---NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL 315 (484)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~ 315 (484)
.+...++|.++...+..+........+..++|.|+++.++. +....+...+...+...++. +..+++.||+|||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~ 291 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNA 291 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHH
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHH
Confidence 22345567777666555555545555566788888776542 34455777777777777777 777999999999999
Q ss_pred HHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHH
Q 011514 316 LSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSF 395 (484)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 395 (484)
+..+..+.+++.+.+.+.++.+. +.....+.+++.+...+..
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~~~~~~~~~~~~ 333 (417)
T 2cfq_A 292 LLLAGTIMSVRIIGSSFATSALE--------------------------------------VVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHTTCCSHHH--------------------------------------HHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHH--------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 88888888777766666554443 1222334455555555667
Q ss_pred HHHHhcccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514 396 RSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH 470 (484)
Q Consensus 396 ~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (484)
..+..|..|++.||++.+.. +..+.+|+.++|.+.|.+.+.. ++.. .|.+.+++.+++.+..+...+
T Consensus 334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~-------~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG-------AYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHH-------HHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHH-------HHHHHHHHHHHHHHHHHhhhc
Confidence 78999999999999999984 8888999999999999999865 3332 456666666665555444333
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.9e-27 Score=241.66 Aligned_cols=386 Identities=10% Similarity=0.026 Sum_probs=237.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CchhHh
Q 011514 6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML 84 (484)
Q Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l 84 (484)
+++.++.+++..++..++.....+.++.+.++.++++ ++.+.+..+.|++.+.+.++..++.++.|+++||+ |||+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3556677888888888888888889998887654211 01124555679999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHH---HHHHHHhHHhHH
Q 011514 85 TLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVCG 160 (484)
Q Consensus 85 ~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig 160 (484)
..+.++.+++.+++++++ + ++.+++.|++.|++. +...+...+++.|++|+++|+++.+. .+...++|..+|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g 164 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998 8 888999999999765 66778999999999999999876666 889999999999
Q ss_pred HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCc------------
Q 011514 161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV------------ 224 (484)
Q Consensus 161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 224 (484)
|.+++. .+||++|++.+++.++..+...+..|+.++.++++++..+..+.......+...+.+.
T Consensus 165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (524)
T 2xut_A 165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVS 244 (524)
T ss_dssp HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhh
Confidence 988875 3799999998877665554443322322211111100000000000000000000000
Q ss_pred -------cCc---------------ccCCCCchHHHH--------HHhhccchhHHHH---HHHHHHhchhhhhHHHHHH
Q 011514 225 -------KIP---------------VCKKIPSIRDLI--------CLLRSSVTLSQAA---VVAFFSGLSEGGMQASFLY 271 (484)
Q Consensus 225 -------~~~---------------~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 271 (484)
... +.+..+++++.. +...++++..... ....+...........++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (524)
T 2xut_A 245 AAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWIL 324 (524)
T ss_dssp HHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHH
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence 000 000000000000 0001112222111 1111222222223334444
Q ss_pred HHhhhcCcCh-hhHHHHHHHHHHHHHHHHHHHHHHhh----hhhcc----hHHHHHhHHHHHHHHHHHhhcc--------
Q 011514 272 FLKAQFHFNK-NQFADLMLIAGLAGTISQLLFMPLLA----PILGE----AKLLSLGLFAACINMFICSISW-------- 334 (484)
Q Consensus 272 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~g~----~~~~~~~~~~~~~~~~~~~~~~-------- 334 (484)
+..+. +.+. ...+.+.....+...+.. .+.+++. ||.++ ++.+..+..+.+++++.+.+..
T Consensus 325 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 402 (524)
T 2xut_A 325 QANDM-VKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSA 402 (524)
T ss_dssp HHHHS-CCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCC
T ss_pred hHHhc-CCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44332 3221 133555444444444444 2324432 33332 3456667777777776665532
Q ss_pred -chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514 335 -SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG 413 (484)
Q Consensus 335 -~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 413 (484)
+.+. +.....+.+++.+...+...++..|..|+++||+++|
T Consensus 403 ~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g 444 (524)
T 2xut_A 403 LSIFW--------------------------------------QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMS 444 (524)
T ss_dssp CCSHH--------------------------------------HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHH
T ss_pred cCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence 1111 1444557788888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 011514 414 CISGISSFANIVSPLIFSPLTAL 436 (484)
Q Consensus 414 ~~~~~~~lg~~~gp~i~g~l~~~ 436 (484)
+.+...++|+.++|.+.|.+.+.
T Consensus 445 ~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 445 FWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp HHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999998874
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=5.4e-13 Score=132.20 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=139.6
Q ss_pred chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI 325 (484)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~ 325 (484)
+.+....+..+.............|.+.++. .+..+.+++.+...++..+++ +..|+++||+|||+.+..+..+.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~ 104 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAA 104 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHH-HhHHHHHHhcCchHHHHHHHHHHHH
Confidence 4455556666666666666777788777664 899999999999999999998 6679999999999999999999999
Q ss_pred HHHHHhh----ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514 326 NMFICSI----SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK 401 (484)
Q Consensus 326 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 401 (484)
+.++.++ .++.+. +....++.|++.+...+...+++.|
T Consensus 105 ~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~i~~ 146 (451)
T 1pw4_A 105 VMLFMGFVPWATSSIAV--------------------------------------MFVLLFLCGWFQGMGWPPCGRTMVH 146 (451)
T ss_dssp HHHHHHHCHHHHSSSSH--------------------------------------HHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred HHHHHHhhhhccccHHH--------------------------------------HHHHHHHHHHHhhhccchHHHHHHH
Confidence 9998888 666555 2444558899999999999999999
Q ss_pred ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCcccCchHHHHHHHHHHHHHHHH-HHhcc
Q 011514 402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS-KGAPFNFPGFSIMCIGLASMVAFIQS-LMMSH 470 (484)
Q Consensus 402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 470 (484)
.+|+++|+++.|+.+....+|..++|.+++.+.+.. + ++..+ .+.+++.++..+.. +..++
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f-------~~~~~~~~~~~~~~~~~~~~ 209 (451)
T 1pw4_A 147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAAL-------YMPAFCAILVALFAFAMMRD 209 (451)
T ss_dssp TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCT-------HHHHHHHHHHHHHHHHHCCC
T ss_pred HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH-------HHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999999988876 5 55543 55544444433333 33443
No 9
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=5e-13 Score=134.15 Aligned_cols=174 Identities=13% Similarity=0.169 Sum_probs=144.4
Q ss_pred chhHHHHHHHHHHhchhhhhHHHHHHHHhhh-----cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHh
Q 011514 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLG 319 (484)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~ 319 (484)
+.++......++..+.......+++.|+++. +|.+..+.+++.+...++..+++ +..|+++|| +|||+.+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHHH
Confidence 4566677777788888888888999999988 89999999999999999999999 777999999 8999999999
Q ss_pred HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514 320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV 399 (484)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 399 (484)
..+..++.++..+.++.+. +....++.|++.+...+...+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~ 133 (491)
T 4aps_A 92 GVLIMLGHIVLALPFGASA--------------------------------------LFGSIILIIIGTGFLKPNVSTLV 133 (491)
T ss_dssp HHHHHHHHHHHHSCCSTTH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHH--------------------------------------HHHHHHHHHHHHHhccchHHHHH
Confidence 9999999999888877766 24445588899999999999999
Q ss_pred hcccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514 400 SKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL 466 (484)
Q Consensus 400 ~~~~p~~~--~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (484)
.|.+|+++ |+++.+..+...++|..++|.+.+.+.+.. +++. .|.+.++..+++.+...
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHV-------AFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHH-------HHHHHHHHHHHHHHHHH
Confidence 99999988 778888899999999999999999999865 4443 34555544444444433
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.48 E-value=1.9e-12 Score=127.75 Aligned_cols=147 Identities=10% Similarity=-0.013 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514 249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF 328 (484)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 328 (484)
....+..+...+.........|. +++.+|.+..+.+++.+...++..++. +..|++.||+|||+.+..+..+.+++.+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 29 ALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 33444445555555556666666 455579999999999999999999999 6679999999999999999999999988
Q ss_pred HH---hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514 329 IC---SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP 405 (484)
Q Consensus 329 ~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 405 (484)
+. ...++.+. +....++.|++.+...+...+++.|..|+
T Consensus 107 ~~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~ 148 (438)
T 3o7q_A 107 LFWPAAEIMNYTL--------------------------------------FLVGLFIIAAGLGCLETAANPFVTVLGPE 148 (438)
T ss_dssp HHHHHHHTTCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHhccccccHHH--------------------------------------HHHHHHHHHhhHHHhhhhHHHHHHHHcCc
Confidence 88 66666666 24445588999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514 406 NEQGKAQGCISGISSFANIVSPLIFSPLTA 435 (484)
Q Consensus 406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~ 435 (484)
++|+++.++.+....+|..++|.+++.+.+
T Consensus 149 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 149 SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999983
No 11
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.46 E-value=1.4e-12 Score=132.09 Aligned_cols=175 Identities=14% Similarity=0.044 Sum_probs=141.4
Q ss_pred cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcC------cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHH
Q 011514 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS 317 (484)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~ 317 (484)
+|.++...+..++..+..+....+++.|+++.+| +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence 3566677778888888888888999999998889 999999999999999999998 7779999999 9999999
Q ss_pred HhHHHHHHHHHHHhhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514 318 LGLFAACINMFICSISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR 396 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 396 (484)
.+..+.+++.++..+.+ +.+. +.....+.|++.+...+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~ 131 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIFEHSVQG--------------------------------------FYTGLFLIALGSGGIKPLVS 131 (524)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHH--------------------------------------HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccHHH--------------------------------------HHHHHHHHHHhccccchhHH
Confidence 99999999888888877 6555 24445578899999999999
Q ss_pred HHHhcccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514 397 SIVSKQVGPNEQGKAQGC---ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL 466 (484)
Q Consensus 397 ~~~~~~~p~~~~g~~~g~---~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (484)
+++.|.+|+++|++..+. .+...++|..++|.+.+.+.+.. +++. .|.+.+++.+++.+...
T Consensus 132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAV-------AFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHH-------HHHHHHHHHHHHHHHHH
Confidence 999999999999876665 89999999999999999998754 4333 44555555555444443
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.40 E-value=7.9e-12 Score=122.65 Aligned_cols=164 Identities=12% Similarity=0.079 Sum_probs=123.8
Q ss_pred HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch
Q 011514 25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI 104 (484)
Q Consensus 25 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~ 104 (484)
......+|.+..+.+ ++.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++.++.++.++
T Consensus 237 ~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~- 311 (417)
T 2cfq_A 237 DVFDQQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS- 311 (417)
T ss_dssp HHHHHHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred HHHHHHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 333344677765542 112334456688888888899999999999999999999999998888888888887777
Q ss_pred hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHH-HHHHHHhHHhHHHHhhHhh----hhHHHHHHHHHH
Q 011514 105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATIV 179 (484)
Q Consensus 105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~ 179 (484)
.+.+++..++.+++. +...+....+++|..|++.|+++.+. .+....+|..+||.+++.+ +++..|.+.+++
T Consensus 312 --~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~ 388 (417)
T 2cfq_A 312 --ALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV 388 (417)
T ss_dssp --HHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence 666677777777543 44455678899999999999999998 4788889999999888763 677788888877
Q ss_pred HHHHHHHHHHHcccCCC
Q 011514 180 SMLAAAYMRVFLKDDVP 196 (484)
Q Consensus 180 ~~i~~~~~~~~lpe~~~ 196 (484)
.++..+..++..||+++
T Consensus 389 ~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 389 ALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHhhhcCCCc
Confidence 77776666555665443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.37 E-value=1.5e-12 Score=125.73 Aligned_cols=165 Identities=11% Similarity=0.076 Sum_probs=132.2
Q ss_pred HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514 251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC 330 (484)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 330 (484)
..+..++...........+|.+.++ +|.++.+.++..+...++..+++ +..|+++||+|||+.+..+..+..++.+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 4455566666666677777776554 69999999999999999999998 667999999999999999999999988888
Q ss_pred hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhH
Q 011514 331 SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK 410 (484)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~ 410 (484)
.+.++.+. +.....+.|++.+...+...+++.|..|+++|++
T Consensus 83 ~~~~~~~~--------------------------------------l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (375)
T 2gfp_A 83 VTTSSLTV--------------------------------------LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH 124 (375)
T ss_dssp HHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred HHhccHHH--------------------------------------HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence 77766555 2444557888889899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHH
Q 011514 411 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI 463 (484)
Q Consensus 411 ~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (484)
+.+..+....+|..++|.+.+.+.+.. +++. .+.+.++..++..+
T Consensus 125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~-------~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 125 ANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA-------CYLFLLVLCAGVTF 169 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH-------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH-------HHHHHHHHHHHHHH
Confidence 999999999999999999999998765 4333 34555444444333
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.17 E-value=6e-10 Score=111.58 Aligned_cols=143 Identities=15% Similarity=0.109 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc---chhhHHHHHHHHHHhhhhccchhhHhhh
Q 011514 54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLAL 130 (484)
Q Consensus 54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~g~~~~~~~ 130 (484)
........+...++.++.+.+.||+|||+.++.+.....++.+..+... ..+........-+..+ .. ....|...
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~ 392 (491)
T 4gc0_A 315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAA-FA-MSWGPVCW 392 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HH-TTTTHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-HH-hHHHHHHH
Confidence 4555666778888899999999999999999998888887776655431 1111112222222222 22 33446778
Q ss_pred HHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 011514 131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND 198 (484)
Q Consensus 131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~ 198 (484)
.+.+|.+|.+.|+++.++......++..+++.+... .++..+|++.+.++++..++.++++||++.+.
T Consensus 393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 999999999999999999999999988887765432 23456788888888888888999999997653
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=34.89 E-value=9.5 Score=18.91 Aligned_cols=13 Identities=46% Similarity=0.951 Sum_probs=10.5
Q ss_pred hhhcccccCchhH
Q 011514 71 IGNLSDQYGRKAM 83 (484)
Q Consensus 71 ~G~l~Dr~Grk~~ 83 (484)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 6788889999864
No 16
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=24.75 E-value=4.2e+02 Score=24.58 Aligned_cols=29 Identities=0% Similarity=-0.294 Sum_probs=15.8
Q ss_pred hhHHHhhcCCccchhHHHHHHHHHHHhHH
Q 011514 129 ALAYVADNISERQRASAFGILLGVLSASF 157 (484)
Q Consensus 129 ~~~~i~~~~~~~~r~~~~~~~~~~~~~g~ 157 (484)
...........++|.+.....+....+-.
T Consensus 145 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 173 (460)
T 3mkt_A 145 LFQALRSFTDGMSLTKPAMVIGFIGLLLN 173 (460)
T ss_dssp HHHHHTTTTCTTSCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 34445555666666666655555544433
No 17
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=20.70 E-value=1.8e+02 Score=19.74 Aligned_cols=32 Identities=6% Similarity=-0.124 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD 200 (484)
Q Consensus 169 ~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~ 200 (484)
|-..+.+...+.++.+-.+-..+||..+..+.
T Consensus 32 ~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~aP~ 63 (77)
T 2dw3_A 32 WAGGVFFGTLLLIGFFRVVGRMLPIQENQAPA 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTTCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccCCC
Confidence 33444444444445555555678886554433
Done!