Query 011515
Match_columns 484
No_of_seqs 194 out of 724
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:44:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1juq_A ADP-ribosylation factor 100.0 6.3E-43 2.2E-47 326.6 17.6 149 2-155 14-169 (171)
2 1x5b_A Signal transducing adap 100.0 1.4E-42 4.7E-47 321.9 18.0 140 2-142 16-155 (163)
3 3ldz_A STAM-1, signal transduc 100.0 1E-42 3.6E-47 315.2 16.3 135 2-138 6-140 (140)
4 1mhq_A ADP-ribosylation factor 100.0 1.8E-42 6E-47 316.6 16.5 136 2-141 2-142 (148)
5 3g2s_A C-terminal fragment of 100.0 4E-41 1.4E-45 308.0 17.1 131 2-136 12-147 (149)
6 1elk_A Target of MYB1; superhe 100.0 6.7E-41 2.3E-45 308.7 17.4 137 2-139 17-157 (157)
7 3zyq_A Hepatocyte growth facto 100.0 4.4E-40 1.5E-44 319.5 18.4 146 2-149 9-154 (226)
8 3rru_A TOM1L1 protein; structu 100.0 9.3E-40 3.2E-44 299.9 11.9 133 1-134 16-152 (152)
9 1dvp_A HRS, hepatocyte growth 100.0 9.8E-38 3.3E-42 301.2 19.3 147 2-150 6-152 (220)
10 1oxz_A ADP-ribosylation factor 99.9 2.5E-26 8.7E-31 216.5 4.5 137 157-295 44-184 (186)
11 1o3x_A ADP-ribosylation factor 99.9 1.3E-23 4.6E-28 190.1 8.7 118 155-272 17-138 (140)
12 1naf_A ADP-ribosylation factor 99.9 1E-23 3.5E-28 194.1 5.8 119 156-274 27-149 (158)
13 1wrd_A TOM1, target of MYB pro 99.9 1.3E-22 4.3E-27 174.9 8.0 94 179-272 5-98 (103)
14 1wr6_A ADP-ribosylation factor 99.8 1.1E-21 3.6E-26 171.1 7.4 94 181-274 2-96 (111)
15 1sz9_A PCF11 protein; RNA poly 98.1 1.6E-05 5.3E-10 71.9 11.5 115 18-134 23-139 (144)
16 1vdy_A Hypothetical protein (R 98.1 8.9E-06 3E-10 73.4 9.2 105 3-109 13-128 (140)
17 1xgw_A Epsin 4; ENTH, enthopro 97.6 0.00071 2.4E-08 63.2 12.9 107 2-111 35-152 (176)
18 1inz_A EPS15-interacting porte 97.5 0.00056 1.9E-08 62.1 10.5 109 2-111 24-140 (148)
19 1eyh_A Epsin; superhelix of he 97.3 0.00072 2.5E-08 61.2 8.7 106 2-111 6-122 (144)
20 3onk_A Epsin-3, ENT3; helix, p 97.1 0.0017 5.9E-08 59.1 9.1 107 2-111 12-129 (150)
21 4flb_A Regulation of nuclear P 96.9 0.0027 9.1E-08 55.7 8.0 93 19-112 21-113 (132)
22 2pjw_H Uncharacterized protein 96.8 0.0013 4.4E-08 54.9 5.1 75 193-269 9-85 (88)
23 3d9j_A RNA-binding protein 16; 96.6 0.0038 1.3E-07 56.2 6.9 90 21-111 25-119 (145)
24 2pjw_V Vacuolar protein sortin 96.1 0.03 1E-06 46.9 9.0 58 211-270 27-84 (91)
25 4fu3_A Regulation of nuclear P 95.5 0.0073 2.5E-07 53.0 3.4 91 20-112 21-114 (135)
26 1hx8_A Synapse-enriched clathr 94.1 0.2 6.8E-06 50.0 9.7 76 2-77 24-99 (299)
27 3zyl_A Phosphatidylinositol-bi 94.0 0.21 7.2E-06 49.3 9.7 72 2-73 29-100 (271)
28 2qk2_A LP04448P; mini spindles 93.8 0.54 1.8E-05 43.7 11.7 95 16-113 26-129 (242)
29 2km4_A Regulator of TY1 transp 93.7 0.33 1.1E-05 43.1 9.5 91 21-112 21-116 (142)
30 3zym_A Phosphatidylinositol-bi 93.7 0.25 8.6E-06 49.6 9.7 72 2-73 29-100 (310)
31 3b2a_A TON_1937, putative unch 91.3 0.47 1.6E-05 46.5 7.7 92 37-130 32-123 (265)
32 2qk1_A Protein STU2; STU2P, XM 89.8 2.8 9.7E-05 39.9 11.8 93 36-132 144-239 (249)
33 2qk1_A Protein STU2; STU2P, XM 88.6 2.8 9.7E-05 39.9 10.8 97 15-114 26-136 (249)
34 3clj_A Protein NRD1; CTD-inter 87.5 1.5 5.1E-05 40.0 7.5 95 18-112 21-130 (157)
35 2qk2_A LP04448P; mini spindles 83.9 6.9 0.00024 36.1 10.6 77 35-114 130-208 (242)
36 4hxt_A De novo protein OR329; 81.2 5.3 0.00018 35.9 8.4 72 38-111 44-115 (252)
37 3f1i_H Hepatocyte growth facto 80.1 4.2 0.00015 34.1 6.5 75 189-265 6-80 (98)
38 4ffb_C Protein STU2; tubulin f 79.3 4.9 0.00017 38.2 7.9 74 36-113 137-214 (278)
39 4db6_A Armadillo repeat protei 79.3 7.3 0.00025 34.4 8.6 71 38-110 138-208 (210)
40 4ffb_C Protein STU2; tubulin f 78.8 4 0.00014 38.8 7.1 74 39-113 56-134 (278)
41 4hxt_A De novo protein OR329; 74.6 19 0.00065 32.1 10.1 74 39-114 171-244 (252)
42 1xqr_A HSPBP1 protein; armadil 74.4 8 0.00027 38.0 8.0 88 22-111 146-238 (296)
43 3f1i_S STAM-1, signal transduc 72.3 22 0.00074 28.7 8.5 71 195-268 6-76 (77)
44 1ibr_B P95, importin beta-1 su 69.8 27 0.00093 34.2 10.8 92 36-130 364-456 (462)
45 3dad_A FH1/FH2 domain-containi 68.0 28 0.00097 35.3 10.4 95 38-136 202-307 (339)
46 1hu3_A EIF4GII; heat repeat, t 66.5 26 0.00089 33.6 9.6 92 19-114 147-242 (260)
47 2jdq_A Importin alpha-1 subuni 66.5 18 0.00061 35.6 8.6 73 38-111 107-179 (450)
48 1xqr_A HSPBP1 protein; armadil 66.2 12 0.00039 36.8 7.1 71 39-110 82-153 (296)
49 4db6_A Armadillo repeat protei 66.0 26 0.00087 30.8 8.8 71 38-110 54-124 (210)
50 2of3_A ZYG-9; multifunctional 65.1 23 0.00078 34.6 8.9 96 17-114 58-164 (266)
51 4db8_A Armadillo-repeat protei 62.7 19 0.00064 32.6 7.4 70 39-110 55-124 (252)
52 4b8j_A Importin subunit alpha- 60.4 29 0.001 35.4 9.2 74 38-112 160-233 (528)
53 3nmw_A APC variant protein; AR 59.6 23 0.0008 35.5 8.1 71 39-109 128-198 (354)
54 3ltm_A Alpha-REP4; protein eng 57.9 30 0.001 30.6 7.8 80 15-109 91-170 (211)
55 2of3_A ZYG-9; multifunctional 57.3 33 0.0011 33.5 8.4 73 35-114 164-239 (266)
56 3dad_A FH1/FH2 domain-containi 56.6 1.7E+02 0.0059 29.6 15.2 163 38-248 160-326 (339)
57 3tt9_A Plakophilin-2; cell adh 56.3 32 0.0011 32.6 8.0 72 38-110 52-123 (233)
58 3ltj_A Alpharep-4; protein eng 55.8 61 0.0021 28.2 9.4 79 16-109 25-103 (201)
59 4db8_A Armadillo-repeat protei 55.2 25 0.00084 31.8 6.8 71 38-110 138-208 (252)
60 3grl_A General vesicular trans 55.1 79 0.0027 34.8 11.7 84 23-111 111-195 (651)
61 4b8j_A Importin subunit alpha- 54.5 25 0.00085 36.0 7.4 74 37-110 73-146 (528)
62 2jdq_A Importin alpha-1 subuni 53.7 30 0.001 33.9 7.6 73 38-111 318-390 (450)
63 3ltj_A Alpharep-4; protein eng 53.6 62 0.0021 28.2 9.0 81 15-110 86-166 (201)
64 2bpt_A Importin beta-1 subunit 51.0 66 0.0023 34.5 10.4 91 37-132 638-730 (861)
65 3ltm_A Alpha-REP4; protein eng 50.6 77 0.0026 27.8 9.2 57 38-107 50-106 (211)
66 4fdd_A Transportin-1; heat rep 49.4 1.3E+02 0.0046 32.7 12.7 74 35-111 439-512 (852)
67 1te4_A Conserved protein MTH18 49.2 76 0.0026 26.1 8.5 56 37-105 72-127 (131)
68 1qgr_A Protein (importin beta 48.1 1.1E+02 0.0038 32.8 11.6 77 36-115 364-441 (876)
69 2z6g_A B-catenin; FULL-length, 47.5 50 0.0017 36.3 8.9 71 39-111 235-305 (780)
70 1jdh_A Beta-catenin; beta-cate 47.4 64 0.0022 32.4 9.1 71 39-111 102-172 (529)
71 2z6h_A Catenin beta-1, beta-ca 47.0 60 0.0021 34.4 9.2 72 37-109 13-84 (644)
72 1wa5_B Importin alpha subunit; 46.9 34 0.0011 35.1 7.0 69 39-108 429-507 (530)
73 1wa5_B Importin alpha subunit; 46.5 70 0.0024 32.7 9.4 73 39-112 384-458 (530)
74 1jdh_A Beta-catenin; beta-cate 46.5 62 0.0021 32.5 8.8 73 36-109 15-87 (529)
75 3nmz_A APC variant protein; pr 46.2 43 0.0015 34.9 7.7 73 38-110 243-315 (458)
76 3l6x_A Catenin delta-1; cateni 46.0 31 0.0011 37.3 6.8 71 39-109 91-161 (584)
77 1ibr_B P95, importin beta-1 su 46.0 60 0.002 31.7 8.4 73 37-111 127-203 (462)
78 1b3u_A Protein (protein phosph 45.8 50 0.0017 33.5 8.1 68 37-109 518-585 (588)
79 2vso_E Eukaryotic initiation f 44.8 92 0.0031 30.1 9.4 87 20-110 175-278 (284)
80 1w63_A Adapter-related protein 44.8 43 0.0015 35.7 7.6 79 23-110 92-170 (618)
81 1wjt_A Transcription elongatio 44.1 22 0.00075 29.9 4.1 23 93-115 66-88 (103)
82 1b3u_A Protein (protein phosph 44.1 1.1E+02 0.0037 31.0 10.2 73 37-114 440-512 (588)
83 2z6h_A Catenin beta-1, beta-ca 43.8 66 0.0022 34.1 8.9 71 39-111 99-169 (644)
84 2z6g_A B-catenin; FULL-length, 42.6 65 0.0022 35.4 8.9 73 36-109 148-220 (780)
85 1w63_A Adapter-related protein 42.5 79 0.0027 33.7 9.3 56 18-73 290-348 (618)
86 2vgl_A Adaptor protein complex 42.3 62 0.0021 34.7 8.4 35 36-70 327-361 (621)
87 3ul1_B Importin subunit alpha- 41.5 48 0.0016 34.3 7.2 70 39-109 402-476 (510)
88 2bpt_A Importin beta-1 subunit 40.8 3E+02 0.01 29.3 13.6 89 24-115 437-533 (861)
89 1fad_A Protein (FADD protein); 40.5 25 0.00084 28.6 3.9 69 62-134 17-85 (99)
90 2o71_A Death domain-containing 40.4 25 0.00085 30.0 4.0 70 62-135 27-96 (115)
91 2of5_A Death domain-containing 39.7 28 0.00096 29.7 4.2 70 62-135 27-96 (114)
92 1xm9_A Plakophilin 1; armadill 39.1 74 0.0025 32.4 8.1 73 38-111 44-116 (457)
93 4fdd_A Transportin-1; heat rep 37.7 1.2E+02 0.004 33.1 9.9 75 38-115 629-703 (852)
94 2vgl_B AP-2 complex subunit be 36.7 87 0.003 33.0 8.4 87 20-108 140-228 (591)
95 3tpo_A Importin subunit alpha- 36.2 98 0.0033 31.9 8.6 72 38-109 76-147 (529)
96 2vgl_A Adaptor protein complex 35.7 1.1E+02 0.0038 32.8 9.1 80 23-109 505-587 (621)
97 3ezq_B Protein FADD; apoptosis 34.9 46 0.0016 28.7 4.8 69 61-134 8-77 (122)
98 1qgr_A Protein (importin beta 34.8 3.4E+02 0.012 28.9 12.9 97 15-114 376-482 (876)
99 1oyz_A Hypothetical protein YI 34.2 83 0.0028 29.0 7.0 56 37-107 191-246 (280)
100 2lp4_A Chemotaxis protein CHEA 33.7 2.5E+02 0.0087 25.9 10.3 74 188-264 12-106 (225)
101 3tt9_A Plakophilin-2; cell adh 33.2 91 0.0031 29.5 7.1 71 39-111 9-81 (233)
102 3ul1_B Importin subunit alpha- 33.2 1.5E+02 0.005 30.5 9.3 70 39-109 359-428 (510)
103 2vgl_B AP-2 complex subunit be 32.2 1.2E+02 0.0039 32.0 8.4 75 32-111 115-189 (591)
104 1xm9_A Plakophilin 1; armadill 32.2 78 0.0027 32.2 6.9 70 40-111 4-73 (457)
105 1oyz_A Hypothetical protein YI 29.4 1.5E+02 0.0052 27.1 7.9 20 231-250 255-274 (280)
106 2of5_H Leucine-rich repeat and 27.7 75 0.0026 26.9 4.9 72 60-134 14-85 (118)
107 3kyj_A CHEA3, putative histidi 27.5 3.1E+02 0.01 23.8 9.2 75 188-265 16-111 (144)
108 3b2a_A TON_1937, putative unch 26.8 1.9E+02 0.0065 28.3 8.0 70 36-110 148-217 (265)
109 2yqf_A Ankyrin-1; death domain 26.0 78 0.0027 26.3 4.7 37 95-135 54-90 (111)
110 3tpo_A Importin subunit alpha- 25.9 2.3E+02 0.0079 29.0 9.3 70 39-109 378-447 (529)
111 1wxp_A THO complex subunit 1; 25.9 57 0.002 27.2 3.8 37 95-135 53-89 (110)
112 1o5h_A Formiminotetrahydrofola 25.3 1.6E+02 0.0053 27.9 7.1 43 197-239 48-91 (214)
113 3tjz_B Coatomer subunit gamma; 25.3 53 0.0018 33.3 4.1 49 22-70 160-208 (355)
114 4f52_E Glomulin; cullin-ring E 24.9 2.4E+02 0.0084 30.4 9.5 88 38-126 317-409 (596)
115 1te4_A Conserved protein MTH18 24.7 1.6E+02 0.0056 23.9 6.5 57 40-109 44-100 (131)
116 2wpv_A GET4, UPF0363 protein Y 24.5 2.4E+02 0.0082 27.9 8.7 71 53-129 71-142 (312)
117 1u6g_C TIP120 protein, CAND1; 24.1 2.3E+02 0.0078 32.3 9.6 73 39-113 435-508 (1230)
118 2p6v_A Transcription initiatio 24.1 84 0.0029 27.0 4.4 33 80-112 23-56 (114)
119 1u6g_C TIP120 protein, CAND1; 23.9 3.2E+02 0.011 31.1 10.7 74 40-115 521-602 (1230)
120 4ani_A Protein GRPE; chaperone 23.5 3.2E+02 0.011 25.7 8.9 43 219-261 82-127 (213)
121 4e17_B Catenin alpha-1; four h 22.2 83 0.0028 22.3 3.3 23 217-239 12-34 (40)
122 2x1g_F Cadmus; transport prote 22.1 1.8E+02 0.0063 32.2 8.0 86 24-114 532-618 (971)
123 3l6x_A Catenin delta-1; cateni 22.0 1.9E+02 0.0066 31.1 7.9 72 37-110 47-118 (584)
124 3ayh_A DNA-directed RNA polyme 21.9 1.2E+02 0.0041 26.4 5.2 54 22-75 56-121 (136)
125 2x19_B Importin-13; nuclear tr 20.7 89 0.003 34.5 5.1 68 38-109 529-597 (963)
126 2qdj_A Retinoblastoma-associat 20.5 2.9E+02 0.01 27.3 8.3 103 20-130 4-121 (304)
No 1
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=100.00 E-value=6.3e-43 Score=326.55 Aligned_cols=149 Identities=29% Similarity=0.451 Sum_probs=133.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|+|||++.+.++||++|++|||+||++++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~ 93 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFR 93 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCC--CCCCCCCCCCCCCCCCC
Q 011515 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVF--PQRSERSAPVFTPPQTH 154 (484)
Q Consensus 82 FLneLvkLv~~k-----~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~F--P~~~e~~~piftPp~~~ 154 (484)
||++|+++++++ ++..||+|||++|+.|+++|++ ++.|.++|++||++||.| |..+ .++++|+||+++
T Consensus 94 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~~~i~~~y~~Lk~~G~~f~~P~~~-~~~~~f~~p~~~ 168 (171)
T 1juq_A 94 FLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE----EAKIKDAYHMLKRQGIVQSDPPIP-VDRTLIPSPPPR 168 (171)
T ss_dssp HHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSCSSCCCBC-CCTTCC------
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CcHHHHHHHHHHHCCCCCCCCCCC-ccccCCCCCCCC
Confidence 999999999754 5789999999999999999985 578999999999999998 7654 446899988765
Q ss_pred C
Q 011515 155 P 155 (484)
Q Consensus 155 p 155 (484)
+
T Consensus 169 ~ 169 (171)
T 1juq_A 169 P 169 (171)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=100.00 E-value=1.4e-42 Score=321.92 Aligned_cols=140 Identities=30% Similarity=0.557 Sum_probs=134.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|+|||++.+.++||+.|++|||+||.++++++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCCCCCC
Q 011515 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSE 142 (484)
Q Consensus 82 FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP~~~e 142 (484)
||++|+++++++++..||+|||++|+.|+++|++++ +|..|.++|++||++||.||..+.
T Consensus 96 Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~ 155 (163)
T 1x5b_A 96 FATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP-QFSLISATIKSMKEEGITFPPAGS 155 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS-TTHHHHHHHHHHHTTTCCCCCCSS
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc-ccHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999988899999999999999999999865 689999999999999999998764
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=100.00 E-value=1e-42 Score=315.20 Aligned_cols=135 Identities=29% Similarity=0.566 Sum_probs=130.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
.+.+|+|||++.+.++||+.|++|||+||+++++++||+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 6 ~d~~iekAT~~~l~~~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~ 85 (140)
T 3ldz_A 6 FDQDVEKATSEMNTAEDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRD 85 (140)
T ss_dssp THHHHHHHTCTTSSSCCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCC
Q 011515 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFP 138 (484)
Q Consensus 82 FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP 138 (484)
|+++|++++++ ++..||+||+++|+.|+++|++++ +|..|.++|++||++||.||
T Consensus 86 Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 86 FASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP-QLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp HHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG-GGTHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHccCcCc
Confidence 99999999964 789999999999999999999864 58889999999999999998
No 4
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=1.8e-42 Score=316.61 Aligned_cols=136 Identities=26% Similarity=0.433 Sum_probs=129.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|+|||++.+.++||+.|++|||+||+++.++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~ 81 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFR 81 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCCCCC
Q 011515 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRS 141 (484)
Q Consensus 82 FLneLvkLv~~k-----~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP~~~ 141 (484)
||++|+++++++ ++..||+|||+||+.|+.+|++ .+.|.++|++||++||.||+..
T Consensus 82 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~y~~Lk~~G~~Fp~~~ 142 (148)
T 1mhq_A 82 FLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE----DIKIRDAYQMLKKQGIIKQDPK 142 (148)
T ss_dssp HHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTSSCSCCC
T ss_pred HHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC----CchHHHHHHHHHHcCCCCCCCC
Confidence 999999999853 5789999999999999999986 4789999999999999999654
No 5
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=100.00 E-value=4e-41 Score=307.99 Aligned_cols=131 Identities=31% Similarity=0.440 Sum_probs=126.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|+|||++.+.++||+.|++|||+||++++++++|+|+|+|||+|+|+++|++||+|||+||||||.+||.+|++++
T Consensus 12 ~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~ 91 (149)
T 3g2s_A 12 LEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFR 91 (149)
T ss_dssp HHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC-----CChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCC
Q 011515 82 VLHEMVKIARKK-----PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (484)
Q Consensus 82 FLneLvkLv~~k-----~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~ 136 (484)
||++|+++++++ ++..||+|||++|+.|+.+|++ .|+|.++|++||++||+
T Consensus 92 Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~----~p~i~~~Y~~Lk~~Giv 147 (149)
T 3g2s_A 92 FLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE----EVKIAEAYQMLKKQGIV 147 (149)
T ss_dssp HHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT----CHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC----CchHHHHHHHHHHCcCc
Confidence 999999999754 6889999999999999999986 47899999999999986
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=100.00 E-value=6.7e-41 Score=308.74 Aligned_cols=137 Identities=38% Similarity=0.671 Sum_probs=129.4
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhcccchhhhhhcch
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIG-SRNSKVQLLALTLLETIIKNCGDIVHMHVAEK 80 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~-s~np~vqllAL~LLE~cVKNCG~~Fh~eVask 80 (484)
++.+|+|||++.+.++||+.|++|||+||.++++++||+|+|+|||+ ++|+++|++||+|||+||||||.+||.+|+++
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~ 96 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ 96 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH
Confidence 57899999999999999999999999999999999999999999998 59999999999999999999999999999999
Q ss_pred HHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCCC
Q 011515 81 NVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQ 139 (484)
Q Consensus 81 ~FLne-LvkLv~~k--~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP~ 139 (484)
+||++ |++++.++ ++..||+|||++|+.|+++|++++ +|..|.++|++||++||.||.
T Consensus 97 ~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~~~p-~l~~i~~~Y~~Lk~~G~~FP~ 157 (157)
T 1elk_A 97 DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAFRSSP-DLTGVVTIYEDLRRKGLEFPM 157 (157)
T ss_dssp HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCC
Confidence 99999 89999653 457999999999999999999764 699999999999999999993
No 7
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=100.00 E-value=4.4e-40 Score=319.50 Aligned_cols=146 Identities=35% Similarity=0.678 Sum_probs=137.7
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|+|||++.+.++||++|++|||+||+++++++||+|+|+|||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 9 ~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~ 88 (226)
T 3zyq_A 9 FERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQ 88 (226)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 011515 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFT 149 (484)
Q Consensus 82 FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP~~~e~~~pift 149 (484)
||++|++|++++++..||+|||+||+.|+++|++++ +|+.|.++|++||++||+||+.++. +.+|+
T Consensus 89 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~l~~i~~~Y~~Lk~~G~~FP~~~~~-damf~ 154 (226)
T 3zyq_A 89 TMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP-KYKVVQDTYQIMKVEGHVFPEFKES-DAMFA 154 (226)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG-GGHHHHHHHHHHHHHTCCCCCCCGG-GGCCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCCcccchhH-HHhhh
Confidence 999999999988999999999999999999999864 6899999999999999999987543 44664
No 8
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=100.00 E-value=9.3e-40 Score=299.88 Aligned_cols=133 Identities=29% Similarity=0.558 Sum_probs=125.1
Q ss_pred ChHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 011515 1 MVNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS-RNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (484)
Q Consensus 1 ~v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s-~np~vqllAL~LLE~cVKNCG~~Fh~eVas 79 (484)
+++.+|+|||++.+.++||+.|++|||+||+++++|+||+|+|+|||++ +|+++|++||+|||+||||||.+||.+|++
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~ileicD~In~~~~~pkeA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eias 95 (152)
T 3rru_A 16 SVGHLIEKATFAGVQTEDWGQFMHICDIINTTQDGPKDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVK 95 (152)
T ss_dssp HHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSS
T ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHh
Confidence 3689999999999999999999999999999999999999999999985 699999999999999999999999999999
Q ss_pred hHHHHH-HHHHhccC--CChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 011515 80 KNVLHE-MVKIARKK--PDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (484)
Q Consensus 80 k~FLne-LvkLv~~k--~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kG 134 (484)
++||++ |+++++++ ++..||+|||+||+.|+.+|++++ +++.|.++|++|+++|
T Consensus 96 k~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~~~p-~l~~i~~~Y~~Lk~~G 152 (152)
T 3rru_A 96 KEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFPGGV-DVSEVKEVYLDLVKKG 152 (152)
T ss_dssp HHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCSSSC-CCHHHHHHHHHHHHC-
T ss_pred hHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHCc
Confidence 999998 89999764 466899999999999999999875 6999999999999998
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=100.00 E-value=9.8e-38 Score=301.24 Aligned_cols=147 Identities=31% Similarity=0.524 Sum_probs=136.8
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
++.+|++||++.+.++||++|++|||+||.++++++||+|+|+|||+++|+++|++||+|||+||||||.+||.+|++++
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~ 85 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKE 85 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 011515 82 VLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGAVFPQRSERSAPVFTP 150 (484)
Q Consensus 82 FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~FP~~~e~~~piftP 150 (484)
||++|++++++.++..||+|||++|+.|+++|++++ .|..|.++|+.|+++|+.||...+ .+++|+.
T Consensus 86 fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~-~~~~i~~~y~~Lk~~G~~FP~~~e-~~a~f~~ 152 (220)
T 1dvp_A 86 NCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD-KYQAIKDTMTILKAKGHTFPELRE-ADAMFTA 152 (220)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS-SCCHHHHHHHHHHHTTCCCCCCCC----CCCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHhhcCcccccccc-ccccccc
Confidence 999999999887889999999999999999999874 689999999999999999998743 4567753
No 10
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.92 E-value=2.5e-26 Score=216.54 Aligned_cols=137 Identities=19% Similarity=0.329 Sum_probs=105.2
Q ss_pred CCCCCCCCCchhhh--HhHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccC-chHHHHHHHHHHHHHHHHH
Q 011515 157 TSYPQNFRNPEHQQ--EAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQRV 233 (484)
Q Consensus 157 Ss~P~~lr~a~~~~--~~~e~~~~~e~~~~~lseLe~ak~nv~LL~EML~~~~P~~~e~~-d~Eli~EL~~~Cr~~q~rV 233 (484)
|++|+|++.+|++. ++.++..+.++.+++.++|++|+++++||+|||++++|++.... ++|+++|||++||+||++|
T Consensus 44 s~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~i 123 (186)
T 1oxz_A 44 SSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTL 123 (186)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCSCTTTTHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCccccHHHHHHHHHHHHHHHHHH
Confidence 67888999999874 45566677788888889999999999999999999999988887 8999999999999999999
Q ss_pred HHHhhcc-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCccccCCC
Q 011515 234 VHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQTAQTDKPKTESKSSEALVDVDG 295 (484)
Q Consensus 234 ~rLI~~~-~DEelL~eLL~aNDeL~~vL~rYe~l~~g~~~~~~~~~~~~~~~~~~~~LiD~~~ 295 (484)
++||+++ +||++|+++|++||+|++||.+|+++++|+...+.....+. ++++++|||+++
T Consensus 124 ~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~~~~~~~~--~~~~~~l~dl~~ 184 (186)
T 1oxz_A 124 FRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGSI--PGSTSALLDLSG 184 (186)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHTTHHHHCC------------------------
T ss_pred HHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCccccCCCC--CCCcccccCCcC
Confidence 9999876 68999999999999999999999999999987554222222 256679999953
No 11
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=99.89 E-value=1.3e-23 Score=190.05 Aligned_cols=118 Identities=17% Similarity=0.313 Sum_probs=98.8
Q ss_pred CCCCCCCCCCCchhh--hHhHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccC-chHHHHHHHHHHHHHHH
Q 011515 155 PLTSYPQNFRNPEHQ--QEAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQ 231 (484)
Q Consensus 155 p~Ss~P~~lr~a~~~--~~~~e~~~~~e~~~~~lseLe~ak~nv~LL~EML~~~~P~~~e~~-d~Eli~EL~~~Cr~~q~ 231 (484)
-+|++|+|++.+|++ .++.++..++++.+++.++|++|+++++||+|||++++|++.... +.|+++|||++||+||+
T Consensus 17 irs~~P~DL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~v~~n~~LL~EML~~~~p~~~~~~~d~Ell~eL~~~ck~~qp 96 (140)
T 1o3x_A 17 LKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRP 96 (140)
T ss_dssp ----------CCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCChhhHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 357899999999987 345566777788888889999999999999999999999988877 89999999999999999
Q ss_pred HHHHHhhcc-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCcc
Q 011515 232 RVVHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSA 272 (484)
Q Consensus 232 rV~rLI~~~-~DEelL~eLL~aNDeL~~vL~rYe~l~~g~~~ 272 (484)
+|++||+++ +||++|+++|.+||+|++||.+|+++++|..+
T Consensus 97 ~i~~li~e~~ddee~l~elL~~ND~ln~vl~kY~~~~~g~~~ 138 (140)
T 1o3x_A 97 TLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEV 138 (140)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCC
Confidence 999999876 68999999999999999999999999999876
No 12
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=99.88 E-value=1e-23 Score=194.09 Aligned_cols=119 Identities=17% Similarity=0.305 Sum_probs=98.8
Q ss_pred CCCCCCCCCCchhhh--HhHhhhcccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccC-chHHHHHHHHHHHHHHHH
Q 011515 156 LTSYPQNFRNPEHQQ--EAAEASAESEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGL-RQEVIVDLVDQCRTYKQR 232 (484)
Q Consensus 156 ~Ss~P~~lr~a~~~~--~~~e~~~~~e~~~~~lseLe~ak~nv~LL~EML~~~~P~~~e~~-d~Eli~EL~~~Cr~~q~r 232 (484)
+|+.|+|++.+|++. ++.++..++++.+++.++|++|+++++||+|||++++|++.... +.|+++|||++||+||++
T Consensus 27 rs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~~pg~~~~~~d~Ell~eL~~~Ck~~qp~ 106 (158)
T 1naf_A 27 KSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPT 106 (158)
T ss_dssp SSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCTTHHHHHHHHHHTHHHH
T ss_pred hcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcccHHHHHHHHHHHHHHHHH
Confidence 357888999999874 45566777788888889999999999999999999999988877 899999999999999999
Q ss_pred HHHHhhcc-CCHHHHHHHhhhhHHHHHHHHHHHhhhcCCcccc
Q 011515 233 VVHLVNST-ADESLLCQGLQLNDDLQRLLAKHESFASGKSAQT 274 (484)
Q Consensus 233 V~rLI~~~-~DEelL~eLL~aNDeL~~vL~rYe~l~~g~~~~~ 274 (484)
|++||+++ +||++|+++|++||+|++||.+|+++++|....+
T Consensus 107 i~~Li~e~~ddee~L~elL~~ND~Ln~vl~kY~~~~~g~~~~~ 149 (158)
T 1naf_A 107 LFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNG 149 (158)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHccCCHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCCC
Confidence 99999876 6899999999999999999999999999988744
No 13
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=99.87 E-value=1.3e-22 Score=174.91 Aligned_cols=94 Identities=31% Similarity=0.453 Sum_probs=87.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHH
Q 011515 179 SEFPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQR 258 (484)
Q Consensus 179 ~e~~~~~lseLe~ak~nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~~DEelL~eLL~aNDeL~~ 258 (484)
+++.+++.++|++|+++++||+|||++++|++.+..++|+++|||++||+||+||++||+.++||++|+++|++||+|++
T Consensus 5 ~eq~~k~~~el~~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~~~dee~l~~lL~~ND~L~~ 84 (103)
T 1wrd_A 5 SEQIGKLRSELEMVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQIANEQLTEELLIVNDNLNN 84 (103)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHhhHHHHH
Confidence 34455667999999999999999999999999888899999999999999999999999988999999999999999999
Q ss_pred HHHHHHhhhcCCcc
Q 011515 259 LLAKHESFASGKSA 272 (484)
Q Consensus 259 vL~rYe~l~~g~~~ 272 (484)
||.+|+++++|...
T Consensus 85 vl~ry~~~~~~~~~ 98 (103)
T 1wrd_A 85 VFLRHERFERFRTG 98 (103)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999999998765
No 14
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=99.85 E-value=1.1e-21 Score=171.14 Aligned_cols=94 Identities=21% Similarity=0.353 Sum_probs=84.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHHHHHHhhcc-CCHHHHHHHhhhhHHHHHH
Q 011515 181 FPTLSLTEIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNST-ADESLLCQGLQLNDDLQRL 259 (484)
Q Consensus 181 ~~~~~lseLe~ak~nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~-~DEelL~eLL~aNDeL~~v 259 (484)
+.+++.++|++++++++||+|||++++|++.+..+.|+++|||.+||+||++|++||+++ +||++|++||++||+|++|
T Consensus 2 ~~~k~~~eLe~V~~n~~LL~EML~~~~pg~~~~~d~ell~ELy~~ck~~qp~i~kL~~e~~ddde~l~elL~~ND~ln~v 81 (111)
T 1wr6_A 2 KVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDGDRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRV 81 (111)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHTTTCCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhHHHHHH
Confidence 346677899999999999999999999998888889999999999999999999999887 5889999999999999999
Q ss_pred HHHHHhhhcCCcccc
Q 011515 260 LAKHESFASGKSAQT 274 (484)
Q Consensus 260 L~rYe~l~~g~~~~~ 274 (484)
|++|+++++|+...+
T Consensus 82 i~rY~~~~~g~~~~~ 96 (111)
T 1wr6_A 82 INSYKTIIEGQVING 96 (111)
T ss_dssp HTHHHHTTTCC----
T ss_pred HHHHHHHhcCCCCCC
Confidence 999999999998754
No 15
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=98.15 E-value=1.6e-05 Score=71.94 Aligned_cols=115 Identities=17% Similarity=0.218 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChh
Q 011515 18 DWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH 97 (484)
Q Consensus 18 Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~ 97 (484)
.-..|-.+....-.....+++.+.+|.++|++-.|..-+-+|-|+|..+||||..|+..++. .+.+.+..... ..+..
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~-~l~~~f~~~~~-~~d~~ 100 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSR-NLFNLYKRTYL-LVDNT 100 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHT-THHHHHHHHHH-TSCHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHH-hCCHH
Confidence 34445555555555566799999999999999999999999999999999999999876664 23333333332 36889
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCchH--HHHHHHHHHHhc
Q 011515 98 VKEKILILIDTWQEAFGGPRARYPQ--YYAAYQELLRAG 134 (484)
Q Consensus 98 VkeKiLeLIq~Wa~aF~~~~~~~~~--i~~~Y~~Lk~kG 134 (484)
+|.|+..|+..|.+.|.+...-|+. +...-+.|.+.|
T Consensus 101 ~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~~~l~~a~ 139 (144)
T 1sz9_A 101 TRTKLINMFKLWLNPNDTGLPLFEGSALEKIEQFLIKAS 139 (144)
T ss_dssp HHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999986653233432 333344454443
No 16
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=98.11 E-value=8.9e-06 Score=73.41 Aligned_cols=105 Identities=24% Similarity=0.265 Sum_probs=81.6
Q ss_pred HHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchH
Q 011515 3 NSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQ-AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKN 81 (484)
Q Consensus 3 ~~lIekATse~l~~~Dw~~ileICD~In~~~~~-akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~ 81 (484)
..+|.+||+..-..+-=.++-||+++....... ..+.+..|-|||+++++++.+-||.||+.|++|+..+|..++-+.-
T Consensus 13 ~~~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~ 92 (140)
T 1vdy_A 13 SRMIDAVTSDEDKVAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNS 92 (140)
T ss_dssp HHHHHHTTCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhH
Confidence 357999999976666667788999999887644 6999999999999999999999999999999999999988776443
Q ss_pred HHHHHHHHhccC--CC--------hhHHHHHHHHHHHH
Q 011515 82 VLHEMVKIARKK--PD--------THVKEKILILIDTW 109 (484)
Q Consensus 82 FLneLvkLv~~k--~d--------~~VkeKiLeLIq~W 109 (484)
..+..+..=+ ++ ..||+++.+++...
T Consensus 93 --~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll 128 (140)
T 1vdy_A 93 --VAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAI 128 (140)
T ss_dssp --HHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHH
Confidence 3333333211 12 46888888887654
No 17
>1xgw_A Epsin 4; ENTH, enthoprotin, clathrin-associated, endocytosis; 1.90A {Homo sapiens} PDB: 2qy7_A 2v8s_E
Probab=97.60 E-value=0.00071 Score=63.18 Aligned_cols=107 Identities=21% Similarity=0.243 Sum_probs=83.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHh-C--CCCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRI-G--SRNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL-~--s~np~vqllAL~LLE~cVKNCG~~Fh~eVa 78 (484)
++.+|.+||+..--+|.-..+-+||+.--.. ..-.+.+..|.||| . .++-+.++-||.|||.|++|+.++|-.++
T Consensus 35 ~E~kVreATnnd~wGPs~~~m~eIa~~T~~~-~~~~~Im~~L~kRl~~~~~k~WR~vyKaL~LLeYLl~nGse~vv~~~- 112 (176)
T 1xgw_A 35 IESKVREATNDDPWGPSGQLMGEIAKATFMY-EQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSA- 112 (176)
T ss_dssp HHHHHHHHTCSCSSCCCHHHHHHHHHHTTCT-TTHHHHHHHHHHHHHSSCTTCHHHHHHHHHHHHHHHHHSCHHHHHHH-
T ss_pred HHHHHHHHcCCCCCCCCHHHHHHHHHHhcCh-hhHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhCCHHHHHHH-
Confidence 3678999999988888888888999886654 56789999999996 4 47999999999999999999998887766
Q ss_pred chHHHHHHHHHhcc------CCC--hhHHHHHHHHHHHHHH
Q 011515 79 EKNVLHEMVKIARK------KPD--THVKEKILILIDTWQE 111 (484)
Q Consensus 79 sk~FLneLvkLv~~------k~d--~~VkeKiLeLIq~Wa~ 111 (484)
++.+..|..|-.= ..| ..||+|+-+++....+
T Consensus 113 -r~~i~~I~~L~~F~y~D~~G~D~G~~VR~kAk~i~~LL~D 152 (176)
T 1xgw_A 113 -REHIYDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQD 152 (176)
T ss_dssp -HHTHHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred -HHhHHHHHhhccCeeECCCCCChHHHHHHHHHHHHHHHCC
Confidence 4445444443221 122 4699999999887654
No 18
>1inz_A EPS15-interacting portein(epsin); alpha-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.118.9.1
Probab=97.50 E-value=0.00056 Score=62.14 Aligned_cols=109 Identities=23% Similarity=0.276 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS--RNSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s--~np~vqllAL~LLE~cVKNCG~~Fh~eVas 79 (484)
++..|..||+...-+|.-..+-+||+.--. .....+.++.|.|||.. ++-+.++-||.|||.|++|+.++|-.++.+
T Consensus 24 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~k~WR~vyKaL~lleyLl~nGse~vv~~~r~ 102 (148)
T 1inz_A 24 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 102 (148)
T ss_dssp HHHHHHHHSCCCSCCCCSCHHHHHHHHHTS-SHHHHHHHHHHHHGGGCCSSCTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchhHhhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999999888888889999998766 35678999999999976 488999999999999999999887766654
Q ss_pred hHH-HHHHHHH--hc-cCC--ChhHHHHHHHHHHHHHH
Q 011515 80 KNV-LHEMVKI--AR-KKP--DTHVKEKILILIDTWQE 111 (484)
Q Consensus 80 k~F-LneLvkL--v~-~k~--d~~VkeKiLeLIq~Wa~ 111 (484)
.-+ +..|... +. ... ...||+|+-+++....+
T Consensus 103 ~~~~I~~L~~F~y~d~~g~D~G~nVR~kAk~l~~LL~D 140 (148)
T 1inz_A 103 NMYAVQTLKDFQYVDRDGKDQGVNVREKAKQLVALLRD 140 (148)
T ss_dssp THHHHHHHHHCCCCCSSCCCCCHHHHHHHHHHHHHHTS
T ss_pred hHHHHHhhcceeeeCCCCcCchHHHHHHHHHHHHHhCC
Confidence 332 2233331 22 112 24799999988876543
No 19
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=97.31 E-value=0.00072 Score=61.17 Aligned_cols=106 Identities=25% Similarity=0.293 Sum_probs=81.0
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccchhhhhhcc
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAE 79 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~--np~vqllAL~LLE~cVKNCG~~Fh~eVas 79 (484)
++..|..||+...-+|.-..+-+|++.--. .....+.+..|.|||... +-..++-||.|||.|++|+.++|-..+.+
T Consensus 6 ~E~~VreAT~~d~wGP~~~~m~eIa~~T~~-~~~~~~Im~~l~kRL~d~~k~Wr~vyKaL~lleyLl~nGse~vv~~~~~ 84 (144)
T 1eyh_A 6 AEIKVREATSNDPWGPSSSLMSEIADLTYN-VVAFSEIMSMIWKRLNDHGKNWRHVYKAMTLMEYLIKTGSERVSQQCKE 84 (144)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHSCCGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHhCC-HhhHHHHHHHHHHHHccCCcchHHHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467899999999888888889999987654 356789999999999764 78899999999999999998887665543
Q ss_pred hHHHHHHHHHhcc-------CCC--hhHHHHHHHHHHHHHH
Q 011515 80 KNVLHEMVKIARK-------KPD--THVKEKILILIDTWQE 111 (484)
Q Consensus 80 k~FLneLvkLv~~-------k~d--~~VkeKiLeLIq~Wa~ 111 (484)
. +..|.. ++. ..| ..||+|+-+++....+
T Consensus 85 ~--~~~i~~-L~~F~y~d~~g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 85 N--MYAVQT-LKDFQYVDRDGKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp T--HHHHHG-GGGCCCBCTTSCBCHHHHHHHHHHHHHHHHC
T ss_pred h--hHHHhh-hccceeeCCCccchHHHHHHHHHHHHHHHCC
Confidence 2 222222 221 112 3799999999988775
No 20
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=97.11 E-value=0.0017 Score=59.07 Aligned_cols=107 Identities=16% Similarity=0.188 Sum_probs=80.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHhcccchhhhhhc
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGS---RNSKVQLLALTLLETIIKNCGDIVHMHVA 78 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s---~np~vqllAL~LLE~cVKNCG~~Fh~eVa 78 (484)
++..|..||+...-+|.-..+-+|++.--. ...-.+.+..|.|||.. ++-+.++-||+|||.|++|+.++|-.++.
T Consensus 12 ~E~kVreAT~nd~wGp~~~~m~eIa~~T~~-~~~~~eIm~~l~kRL~d~~~k~WR~vyKaL~lLeyLl~nGse~vv~~~r 90 (150)
T 3onk_A 12 MEGKVREATNNEPWGASSTLMDQISQGTYN-FREREEILSMIFRRFTEKAGSEWRQIYKALQLLDYLIKHGSERFIDDTR 90 (150)
T ss_dssp HHHHHHHHTSSCSSCCCHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 467899999987777887888888776543 34568999999999964 48999999999999999999998887765
Q ss_pred chHHHHHHHHHhccC------CC--hhHHHHHHHHHHHHHH
Q 011515 79 EKNVLHEMVKIARKK------PD--THVKEKILILIDTWQE 111 (484)
Q Consensus 79 sk~FLneLvkLv~~k------~d--~~VkeKiLeLIq~Wa~ 111 (484)
+- +..|..|-.=+ .| ..||+|+-+++....+
T Consensus 91 ~~--~~~i~~L~~F~~~d~~G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 91 NS--INLIRILETFHYIDSQGRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp TT--HHHHHGGGGCCCBCTTSCBCHHHHHHHHHHHHHHHTC
T ss_pred HH--HHHHHhhhcccccCCCCCchHHHHHHHHHHHHHHHcC
Confidence 43 33333332211 12 3799999999887764
No 21
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=96.88 E-value=0.0027 Score=55.72 Aligned_cols=93 Identities=12% Similarity=0.143 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhH
Q 011515 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHV 98 (484)
Q Consensus 19 w~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~V 98 (484)
-..|-.+...+-.....+++.+.+|.++|+.-.+..-+..|-|++.+++||+.+....+. +.|-..|..++..-.++.+
T Consensus 21 ~~sI~~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~-~~f~~~l~~~~~~~~~~~~ 99 (132)
T 4flb_A 21 MESIQGLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFR-ESFADVLPEAAALVKDPSV 99 (132)
T ss_dssp HHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHH-HHHHTTHHHHHHTTCSTTT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHH-HHHHHHHHHHHHHhCCHHH
Confidence 345555666555556678999999999999888999999999999999999876554443 3455555555554457789
Q ss_pred HHHHHHHHHHHHHH
Q 011515 99 KEKILILIDTWQEA 112 (484)
Q Consensus 99 keKiLeLIq~Wa~a 112 (484)
|+|+..++..|.+.
T Consensus 100 ~~kl~~ll~iW~~r 113 (132)
T 4flb_A 100 SKSVERIFKIWEDR 113 (132)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC
Confidence 99999999999985
No 22
>2pjw_H Uncharacterized protein YHL002W; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0013 Score=54.85 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHhhcCCC-CC-ccCchHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcC
Q 011515 193 RGIMDVLAEMLNALDPN-NK-EGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASG 269 (484)
Q Consensus 193 k~nv~LL~EML~~~~P~-~~-e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~~DEelL~eLL~aNDeL~~vL~rYe~l~~g 269 (484)
..+++-|-++|...+|. +- +..+++-|++||.+|-.+||+|.++|....... .+|+.+|+.|.++..-|+.+...
T Consensus 9 ~~~vd~Ll~~L~~~~p~~~~~~~~~d~eiq~LY~~v~~lRPkL~~li~kysqKk--~eL~~Ln~kl~~a~~~Yd~lle~ 85 (88)
T 2pjw_H 9 KTTIDQLHNSLNAASKTGNSNEVLQDPHIGDMYGSVTPLRPQVTRMLGKYAKEK--EDMLSLRQVLANAERSYNQLMDR 85 (88)
T ss_dssp HHHHHHHHHHHHHHHTTCCTHHHHSCHHHHHHHHHHTTHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHhcCCCCCchhhhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888899988773 22 567788899999999999999999998764332 37889999999999999998654
No 23
>3d9j_A RNA-binding protein 16; SCAF8, RNA polymerase II CTD interacting domain, arm repeats phospho-CTD, phosphoprotein, transcription; 1.60A {Homo sapiens} PDB: 3d9k_A* 3d9l_A* 3d9m_A* 3d9n_A* 3d9p_A* 3d9i_A 3d9o_A* 2diw_A
Probab=96.59 E-value=0.0038 Score=56.20 Aligned_cols=90 Identities=16% Similarity=0.224 Sum_probs=68.8
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhh---hhcchHHHHHHHHHhcc--CCC
Q 011515 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHM---HVAEKNVLHEMVKIARK--KPD 95 (484)
Q Consensus 21 ~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~---eVask~FLneLvkLv~~--k~d 95 (484)
.|-.|....-.....++..|..|.++|+.-.+..-|-+|-|+|..++|++..... .++ ..|...|.+++.. +.+
T Consensus 25 ~I~~LT~~a~~~~~~~~~IV~~~~~~i~k~~~~~KL~~LYL~DsIvrn~~~k~~~~~~~f~-~~F~~~L~~~f~~~~~~~ 103 (145)
T 3d9j_A 25 KMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFA-PRFSNNIISTFQNLYRCP 103 (145)
T ss_dssp HHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHCTTTCSHH-HHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccceeehhhhhHHHHHHhhhhcCCccccHH-HHHHHHHHHHHHHHHhCC
Confidence 4444444444444578999999999998888888999999999999999985432 232 4577777776542 345
Q ss_pred hhHHHHHHHHHHHHHH
Q 011515 96 THVKEKILILIDTWQE 111 (484)
Q Consensus 96 ~~VkeKiLeLIq~Wa~ 111 (484)
..+|.||..|+..|.+
T Consensus 104 ~~~r~kl~rLl~iW~~ 119 (145)
T 3d9j_A 104 GDDKSKIVRVLNLWQK 119 (145)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8999999999999986
No 24
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=96.07 E-value=0.03 Score=46.86 Aligned_cols=58 Identities=14% Similarity=0.218 Sum_probs=48.3
Q ss_pred CccCchHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhcCC
Q 011515 211 KEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFASGK 270 (484)
Q Consensus 211 ~e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~~DEelL~eLL~aNDeL~~vL~rYe~l~~g~ 270 (484)
....+++-+++||+++-.+||||.+.+.....- ...|+.+||.|..+..-||++...+
T Consensus 27 ~~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K--~~~L~~mn~Kls~a~rlYD~lLE~~ 84 (91)
T 2pjw_V 27 NEILEDSKLQNLAQRVFASKARLNYALNDKAQK--YNTLIEMNGKISEIMNIYDRLLEQQ 84 (91)
T ss_dssp STTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHhHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678889999999999999999999765322 3478999999999999999986543
No 25
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=95.55 E-value=0.0073 Score=52.95 Aligned_cols=91 Identities=20% Similarity=0.237 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc---chhhhhhcchHHHHHHHHHhccCCCh
Q 011515 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHEMVKIARKKPDT 96 (484)
Q Consensus 20 ~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG---~~Fh~eVask~FLneLvkLv~~k~d~ 96 (484)
..|-.+...+-.....+++.+.+|.++|+...+..-+..|-|++.+++||. ..|...+.. .|-.+...+-...+.
T Consensus 21 ~sI~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~--~l~~~~~~~~~~~~~ 98 (135)
T 4fu3_A 21 QSVQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFES--VLVDAFSHVAREADE 98 (135)
T ss_dssp THHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHT--THHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHcCCH
Confidence 345555555555556789999999999987767778999999999999994 344433321 222222222222356
Q ss_pred hHHHHHHHHHHHHHHH
Q 011515 97 HVKEKILILIDTWQEA 112 (484)
Q Consensus 97 ~VkeKiLeLIq~Wa~a 112 (484)
.+|+|+..++..|.+.
T Consensus 99 ~~k~kl~kll~iW~~r 114 (135)
T 4fu3_A 99 GCKKPLERLLNIWQER 114 (135)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 7899999999999974
No 26
>1hx8_A Synapse-enriched clathrin adaptor protein LAP; all alpha, alpha helices repeats, coiled-coil, endocytosis/exocytosis complex; 2.20A {Drosophila melanogaster} SCOP: a.7.8.2 a.118.9.3
Probab=94.07 E-value=0.2 Score=49.97 Aligned_cols=76 Identities=14% Similarity=0.068 Sum_probs=66.1
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhh
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHV 77 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eV 77 (484)
++..|.|||+....-|+-..+-+|............+.+++|.+|++..|..|++-||.++.-|+.-+...|-.++
T Consensus 24 l~kaV~KAT~~~~~ppk~Khv~~ii~~t~~~~~~~~~~~~~L~~R~~~~~w~va~K~LivlH~llreG~~~~~~~l 99 (299)
T 1hx8_A 24 LAKSVCKATTEECIGPKKKHLDYLVHCANEPNVSIPHLANLLIERSQNANWVVVYKSLITTHHLMAYGNERFMQYL 99 (299)
T ss_dssp HHHHHHHHSCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHhccCCCCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4678999999998889999999998888877777899999999999999999999999999999998765554433
No 27
>3zyl_A Phosphatidylinositol-binding clathrin assembly PR; endocytosis, endobrevin, synaptobrevin, VAMP2, VAMP3, AP180, membrane, adaptor protein; 1.70A {Rattus norvegicus} PDB: 3zyk_A 1hf8_A 1hfa_A* 1hg2_A* 1hg5_A*
Probab=94.01 E-value=0.21 Score=49.27 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=63.5
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~F 73 (484)
++..|.|||+.....|+-..+-+|.-..........+.+++|.+||+.+|..+++-||.++.-|+..+.+.|
T Consensus 29 l~~aV~KATs~~~~~Pk~Khv~~il~~T~~~~~~~~~~~~~L~~Rl~~~~w~v~~KaLivlH~llreG~~~~ 100 (271)
T 3zyl_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (271)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHSTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHccCCCcHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 467899999999888999998888877777777789999999999999999999999999999999876543
No 28
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=93.78 E-value=0.54 Score=43.75 Aligned_cols=95 Identities=15% Similarity=0.155 Sum_probs=76.2
Q ss_pred CcCHH----HHHHHHHHHhCC----CCCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHH
Q 011515 16 GPDWA----MNIEICDMLNHD----PGQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM 86 (484)
Q Consensus 16 ~~Dw~----~ileICD~In~~----~~~akeAvraIrKRL-~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneL 86 (484)
..||. .+..|+.+++.. ...-.+.+++|+++| +..|.++...|+..|..+.+..|..|+..+ ..|+..|
T Consensus 26 s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~--~~ilp~l 103 (242)
T 2qk2_A 26 EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA--SACVPSL 103 (242)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHH
Confidence 46885 677788888762 123468899999999 599999999999999999999999887655 3678888
Q ss_pred HHHhccCCChhHHHHHHHHHHHHHHHh
Q 011515 87 VKIARKKPDTHVKEKILILIDTWQEAF 113 (484)
Q Consensus 87 vkLv~~k~d~~VkeKiLeLIq~Wa~aF 113 (484)
.+.+.. ....||+.+.+.+..+...+
T Consensus 104 l~~l~d-~~~~vr~~a~~aL~~~~~~~ 129 (242)
T 2qk2_A 104 LEKFKE-KKPNVVTALREAIDAIYAST 129 (242)
T ss_dssp HHGGGC-CCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHcC-CCHHHHHHHHHHHHHHHHcC
Confidence 777776 35789999999999997643
No 29
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=93.70 E-value=0.33 Score=43.11 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=64.9
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHh---ccCCC
Q 011515 21 MNIEICDMLNHDPGQAKDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIA---RKKPD 95 (484)
Q Consensus 21 ~ileICD~In~~~~~akeAvraIrKRL~s~--np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv---~~k~d 95 (484)
.|-.+..-+-.....+++.+.++.++|... ++...+.-|-|++-++.||-.+...++. +.|-..|..++ -...+
T Consensus 21 sIq~~s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~-~~F~~~L~~~~~~~~~~~~ 99 (142)
T 2km4_A 21 SISSASKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQ-DSFGKVAAEVLGRINQEFP 99 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHH-HHHHHTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHH-HHHHHHHHHHHHHHHHcCC
Confidence 444445555555668899999999999876 7888899999999999999654322222 23333333333 22358
Q ss_pred hhHHHHHHHHHHHHHHH
Q 011515 96 THVKEKILILIDTWQEA 112 (484)
Q Consensus 96 ~~VkeKiLeLIq~Wa~a 112 (484)
..++.|+..+|..|.+.
T Consensus 100 ~~~~~kv~rvl~iWeer 116 (142)
T 2km4_A 100 RDLKKKLSRVVNILKER 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 89999999999999885
No 30
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=93.67 E-value=0.25 Score=49.62 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=63.2
Q ss_pred hHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 011515 2 VNSMVDRATSDMLIGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (484)
Q Consensus 2 v~~lIekATse~l~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~F 73 (484)
++..|.|||+.....|+-..+-+|............+.+++|.+||..+|..+++-||.++..|+..+.+.|
T Consensus 29 l~~aV~KATs~~~~pPk~Khv~~il~~T~~~~~~~~~i~~~L~~Rl~~~~w~vv~KaLivlH~llreG~~~~ 100 (310)
T 3zym_A 29 VSKTVCKATTHEIMGPKKKHLDYLIQCTNEMNVNIPQLADSLFERTTNSSWVVVFKSLITTHHLMVYGNERF 100 (310)
T ss_dssp HHHHHHHHTCSSSSCCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHhcCcCCCCCCChhHHHHHHHHHccCCCcHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhcCCHHH
Confidence 467899999999999999998888877777777789999999999999999999999999999999865443
No 31
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.32 E-value=0.47 Score=46.48 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCC
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGP 116 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~ 116 (484)
++++..|.+=|..+|+.++++||.+||-++|-........+- +++++.++++.+. .+..|.=+.+..|...=+..+-+
T Consensus 32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~-~dEkval~A~r~L~~LLe~vpL~ 109 (265)
T 3b2a_A 32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQ-ENEKVTIKALRALGYLVKDVPMG 109 (265)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCS-TTHHHHHHHHHHHHHHHTTCCBC
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhc-cchhHHHHHHHHHHHHHcCCCCC
Confidence 568888999999999999999999999999998666666665 6899999999965 47899999999988887766544
Q ss_pred CCCchHHHHHHHHH
Q 011515 117 RARYPQYYAAYQEL 130 (484)
Q Consensus 117 ~~~~~~i~~~Y~~L 130 (484)
+..|.++.++...+
T Consensus 110 ~~~y~Kl~~aL~dl 123 (265)
T 3b2a_A 110 SKTFLKAAKTLVSL 123 (265)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444444
No 32
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.78 E-value=2.8 Score=39.88 Aligned_cols=93 Identities=13% Similarity=0.247 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc---hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD---IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~---~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~a 112 (484)
....+..|..-|+++|+.+...+|..|..|+.+++. .|...+ .+.++..|.+++.. ++..||+...+.+-.-...
T Consensus 144 l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D-~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 144 NEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVND-TQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp THHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 457777777888999999999999999999999984 455444 24678888888865 5789999999999999999
Q ss_pred hCCCCCCchHHHHHHHHHHH
Q 011515 113 FGGPRARYPQYYAAYQELLR 132 (484)
Q Consensus 113 F~~~~~~~~~i~~~Y~~Lk~ 132 (484)
++.. .+..|.......|+
T Consensus 222 vG~~--~~~p~l~~Ld~~k~ 239 (249)
T 2qk1_A 222 FGMN--TFVKTLEHLDNLKR 239 (249)
T ss_dssp HCSG--GGHHHHHHSCHHHH
T ss_pred hCHH--HHHHHHHHHhHHHH
Confidence 9752 24444443344443
No 33
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=88.56 E-value=2.8 Score=39.88 Aligned_cols=97 Identities=18% Similarity=0.139 Sum_probs=73.6
Q ss_pred CCcCHH----HHHHHHH-HHhCCC------CCHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHhccc-chhh-hhhcch
Q 011515 15 IGPDWA----MNIEICD-MLNHDP------GQAKDVVKGIKKRI-GSRNSKVQLLALTLLETIIKNCG-DIVH-MHVAEK 80 (484)
Q Consensus 15 ~~~Dw~----~ileICD-~In~~~------~~akeAvraIrKRL-~s~np~vqllAL~LLE~cVKNCG-~~Fh-~eVask 80 (484)
...+|. ...+|.. +++..+ ..-.+.+++|++.| +..|..++..|+..|..+.+..+ ..|. ... .
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~--~ 103 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV--S 103 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH--H
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH--H
Confidence 346886 4566777 765422 12257899999999 79999999999999999999888 7776 333 2
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 81 NVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 81 ~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
.++..|...++.+ ...|++.+...+..|.+...
T Consensus 104 ~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~ 136 (249)
T 2qk1_A 104 LVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYD 136 (249)
T ss_dssp HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcc
Confidence 4666666666654 37899999999999999863
No 34
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=87.46 E-value=1.5 Score=40.04 Aligned_cols=95 Identities=18% Similarity=0.207 Sum_probs=63.5
Q ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhh----------hcc-hHHHHHH
Q 011515 18 DWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMH----------VAE-KNVLHEM 86 (484)
Q Consensus 18 Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~e----------Vas-k~FLneL 86 (484)
.=+.|..|..+.-..-...+-.+..|.+-++.--+.-=+=+|-|+|..++||-+.+... ++. -.++.++
T Consensus 21 S~skI~~LT~~A~~nv~~~~~iv~~l~~~ikk~p~~hKL~~LYVvDSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~ 100 (157)
T 3clj_A 21 SGSRIKKLTTYALDHIDIESKIISLIIDYSRLCPDSHKLGSLYIIDSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEV 100 (157)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHHHTCCC----STTSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcceeeeeeehHHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHH
Confidence 34455556665555545567788889999987777888899999999999986544220 110 0122333
Q ss_pred HH-Hhcc---CCChhHHHHHHHHHHHHHHH
Q 011515 87 VK-IARK---KPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 87 vk-Lv~~---k~d~~VkeKiLeLIq~Wa~a 112 (484)
+. ++.. ..+...|+||.+||..|...
T Consensus 101 i~~l~~~~~~~~~~~~k~Ki~klldiW~k~ 130 (157)
T 3clj_A 101 IQELLSDAIAKSNQDHKEKIRMLLDIWDRS 130 (157)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHccC
Confidence 22 3222 35789999999999999976
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=83.95 E-value=6.9 Score=36.07 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch--hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 011515 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI--VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 35 ~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~--Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~a 112 (484)
.....+..|...|+++++.+...++.+|..|+.++|.. |...+ ..++..|.+++.. ...+||..+.+.|..-...
T Consensus 130 ~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D-~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNE-PDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHH
Confidence 35667777888899999999999999999999988743 33333 3677777777754 4679999999988887777
Q ss_pred hC
Q 011515 113 FG 114 (484)
Q Consensus 113 F~ 114 (484)
++
T Consensus 207 vg 208 (242)
T 2qk2_A 207 MG 208 (242)
T ss_dssp HC
T ss_pred cC
Confidence 65
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=81.19 E-value=5.3 Score=35.92 Aligned_cols=72 Identities=19% Similarity=0.172 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.++..|.+-|++.++.++..|+..|..+..+. ......+.+...+..|+++++. .+..|+..++..|.....
T Consensus 44 g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~ 115 (252)
T 4hxt_A 44 GGVEVLVKLLTSTDSEVQKEAARALANIASGP-DEAIKAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIAS 115 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 47888999999999999999999999998875 4566777788899999999985 578999999888887763
No 37
>3f1i_H Hepatocyte growth factor-regulated tyrosine kinas substrate; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=80.06 E-value=4.2 Score=34.12 Aligned_cols=75 Identities=9% Similarity=0.211 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHh
Q 011515 189 IQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHES 265 (484)
Q Consensus 189 Le~ak~nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~~DEelL~eLL~aNDeL~~vL~rYe~ 265 (484)
++..+..+.+|-+=+......+.+...+..++.||.+.-.|.++|+++|+..+|.-.-- =.+.|.|..+=+.-.+
T Consensus 6 ~~~l~~sv~if~NRmksn~~RGrsi~nDssVQsLF~~lt~MH~~Ll~~i~~~ee~R~~y--E~LQDkL~qi~eAR~A 80 (98)
T 3f1i_H 6 LKALQNAVTTFVNRMKSNHMRGRSITNDSAVLSLFQSINGMHPQLLELLNQLDERRLYY--EGLQDKLAQIRDARGA 80 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 56677888888774444333346667788899999999999999999998765543322 3345666665444333
No 38
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=79.30 E-value=4.9 Score=38.21 Aligned_cols=74 Identities=16% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHH----HHHhccCCChhHHHHHHHHHHHHHH
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEM----VKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneL----vkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
....+..|..-++++||++..-+|..|..|+++.|... +.-+.++..+ .+++. ..+..||+-.+.++-.-..
T Consensus 137 ~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~---~~~k~~l~~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 137 ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTN---VNVQTFLPELLKHVPQLAG-HGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTT---CCHHHHHHHHGGGHHHHHT-CSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCc---CCchhHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999999987532 2334455544 44444 4689999998888766554
Q ss_pred Hh
Q 011515 112 AF 113 (484)
Q Consensus 112 aF 113 (484)
.+
T Consensus 213 ~~ 214 (278)
T 4ffb_C 213 VT 214 (278)
T ss_dssp C-
T ss_pred Hh
Confidence 44
No 39
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=79.27 E-value=7.3 Score=34.44 Aligned_cols=71 Identities=14% Similarity=0.201 Sum_probs=58.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.++..|.+-|.+.++.++..|+..|-.|..+. ......+....++..|++++.. .+..|+++++..|...+
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-cHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHh
Confidence 36788888999999999999999999998865 3455667777899999999885 57899999999887653
No 40
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=78.85 E-value=4 Score=38.83 Aligned_cols=74 Identities=14% Similarity=-0.007 Sum_probs=50.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc----hHHHHHHH-HHhccCCChhHHHHHHHHHHHHHHHh
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE----KNVLHEMV-KIARKKPDTHVKEKILILIDTWQEAF 113 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVas----k~FLneLv-kLv~~k~d~~VkeKiLeLIq~Wa~aF 113 (484)
..+.|+|.++..|..++..||.+|..+++.+|..+...-.. ..++..|+ |.+. .....+++.+++.+..|.+..
T Consensus 56 ~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~-~~k~~~~~~a~~~l~~~~~~~ 134 (278)
T 4ffb_C 56 DPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLT-SSRATTKTQSMSCILSLCGLD 134 (278)
T ss_dssp CTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSS-CCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhc-CccHHHHHHHHHHHHHHHHhc
Confidence 35689999999999999999999999999988654221111 23344433 2222 245689999999998887643
No 41
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=74.57 E-value=19 Score=32.13 Aligned_cols=74 Identities=16% Similarity=0.108 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
++..|.+-|.+.++.++..|+..|..+.... ......+.+..++..|++++.. .+..|++.++..|..-.....
T Consensus 171 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 171 GVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTS-TDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCC-CcHHHHHHHHHHHHHHHcCCC
Confidence 7888999999999999999999999988744 3445566678899999999875 477999999999988887554
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=74.40 E-value=8 Score=37.97 Aligned_cols=88 Identities=10% Similarity=0.156 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCCCH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCCh
Q 011515 22 NIEICDMLNHDPGQA-----KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDT 96 (484)
Q Consensus 22 ileICD~In~~~~~a-----keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~ 96 (484)
+..|+.+++..+.+. ..++..|.+-|+++++.++..|..+|-.+... .......|.+..++..|++++... +.
T Consensus 146 ~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~-d~ 223 (296)
T 1xqr_A 146 LFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTE-HS 223 (296)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSC-CS
T ss_pred HHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCC-Ch
Confidence 344555565444322 23677888888999999999999999999887 445666777889999999998864 77
Q ss_pred hHHHHHHHHHHHHHH
Q 011515 97 HVKEKILILIDTWQE 111 (484)
Q Consensus 97 ~VkeKiLeLIq~Wa~ 111 (484)
.|++.++..|..-..
T Consensus 224 ~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 224 PFHEHVLGALCSLVT 238 (296)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999998876653
No 43
>3f1i_S STAM-1, signal transducing adapter molecule 1; HGS, ESCRT, ubiquitin, MVB, endosome, membrane, metal- phosphoprotein, protein transport, transport; 2.30A {Homo sapiens}
Probab=72.25 E-value=22 Score=28.70 Aligned_cols=71 Identities=18% Similarity=0.238 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHhhhhHHHHHHHHHHHhhhc
Q 011515 195 IMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYKQRVVHLVNSTADESLLCQGLQLNDDLQRLLAKHESFAS 268 (484)
Q Consensus 195 nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q~rV~rLI~~~~DEelL~eLL~aNDeL~~vL~rYe~l~~ 268 (484)
.++.+-.+|...+|.+......|+ -+|=..|.+|=+-|=.=++.++-. =.+|=++|-.+..+|+.|..+..
T Consensus 6 kmd~~L~~l~~aDP~~~~~D~~el-~~LE~~c~~MgplId~kLE~iDrk--h~~Lteln~~~leaL~lY~~lM~ 76 (77)
T 3f1i_S 6 KMDQLLQMLQSTDPSDDQPDLPEL-LHLEAMCHQMGPLIDEKLEDIDRK--HSELSELNVKVMEALSLYTKLMN 76 (77)
T ss_dssp HHHHHHHHHHTCCTTSCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 466666788999998765545555 579999999988775555554322 34566889999999999998754
No 44
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=69.78 E-value=27 Score=34.22 Aligned_cols=92 Identities=13% Similarity=0.120 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG-~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
-...+..|...|++.+.++..-|+..|..+...|+ ..+...+ ..++..|.++++. .+..||..+...|......+.
T Consensus 364 ~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d-~~~~Vr~~a~~~l~~~~~~~~ 440 (462)
T 1ibr_B 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (462)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcc
Confidence 34677788888999999999999999999999887 3344444 4578888888765 468999999999999999886
Q ss_pred CCCCCchHHHHHHHHH
Q 011515 115 GPRARYPQYYAAYQEL 130 (484)
Q Consensus 115 ~~~~~~~~i~~~Y~~L 130 (484)
..-...+.+...+..|
T Consensus 441 ~~~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 441 EAAINDVYLAPLLQCL 456 (462)
T ss_dssp GGCCSTTTHHHHHHHH
T ss_pred cccccHHHHHHHHHHH
Confidence 5210123444555544
No 45
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=68.02 E-value=28 Score=35.32 Aligned_cols=95 Identities=17% Similarity=0.175 Sum_probs=63.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcch---------HHHHHHHHHhcc--CCChhHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEK---------NVLHEMVKIARK--KPDTHVKEKILILI 106 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask---------~FLneLvkLv~~--k~d~~VkeKiLeLI 106 (484)
+.++-|..-+.+....|+..||.||+.+|.++...|..-+..- ..+..|++++.. ..|.+++...+.||
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLI 281 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLI 281 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 3444444455568899999999999999999855444322211 135677777763 46889999999999
Q ss_pred HHHHHHhCCCCCCchHHHHHHHHHHHhcCC
Q 011515 107 DTWQEAFGGPRARYPQYYAAYQELLRAGAV 136 (484)
Q Consensus 107 q~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi~ 136 (484)
..-=....+ -..+++.-..|.++|+.
T Consensus 282 N~lL~~apd----~d~~~di~d~Le~~gi~ 307 (339)
T 3dad_A 282 NKTLAALPD----QDSFYDVTDALEQQGME 307 (339)
T ss_dssp HHHHHHCSS----HHHHHHHHHHHHHTTHH
T ss_pred HHHHhcCCC----hhHHHHHHHHHHHccHH
Confidence 876655432 23355666667777753
No 46
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=66.48 E-value=26 Score=33.62 Aligned_cols=92 Identities=13% Similarity=0.142 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc---hHHHHHHHHHhc-cCC
Q 011515 19 WAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE---KNVLHEMVKIAR-KKP 94 (484)
Q Consensus 19 w~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVas---k~FLneLvkLv~-~k~ 94 (484)
.+.+.=||++.+..-...+.+..+|++=|.+.+.. .+.+|=.++++||..+...-+. ..++..|..++. .+.
T Consensus 147 lg~i~FIgeLy~~~~l~~~i~~~~l~~Ll~~~~e~----~iE~l~~lL~tvG~~L~~~~~~~~l~~~f~~l~~~~~~~~l 222 (260)
T 1hu3_A 147 IGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDEE----SLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKT 222 (260)
T ss_dssp HHHHHHHHHHHTTTCSCHHHHHHHHHHHHHSCSHH----HHHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHHHHHSCSS
T ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhCCCC
Confidence 36677799999998888888888888888877765 5666777777889887653321 334555555554 356
Q ss_pred ChhHHHHHHHHHHHHHHHhC
Q 011515 95 DTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 95 d~~VkeKiLeLIq~Wa~aF~ 114 (484)
+.+||-+|..++..-...+.
T Consensus 223 s~Rirfmi~~l~dLR~~~W~ 242 (260)
T 1hu3_A 223 SSRIRFMLQDVIDLRLCNWV 242 (260)
T ss_dssp CHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHHHcCCC
Confidence 77888888888877665554
No 47
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=66.47 E-value=18 Score=35.58 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.++..|.+-|++.++.++..|+..|..+...+. .+...+.....+..|++++....+..|++.++..+.....
T Consensus 107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDST-MCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCH-HHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 477788888899999999999999999988763 3455565667888999998865678899988877766553
No 48
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=66.23 E-value=12 Score=36.83 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=59.0
Q ss_pred HHHHHHH-HhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 39 VVKGIKK-RIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 39 AvraIrK-RL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
++..|.+ -|++.++.++..|+..|-.++.|. ...+..|.+...+.-|+++++..++..|+++++..|-...
T Consensus 82 ~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n-~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 82 GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNV-AAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 5667777 678999999999999999999986 4567777778899999999987567899999887776654
No 49
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.99 E-value=26 Score=30.77 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.++..|.+-|++.++.++..|+..|-.+..+.. .....+.+...+..|+++++.. +..|++.++..|..-.
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~ 124 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 124 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH-HHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-HHHHHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998886553 3445566678899999998764 6889998888776654
No 50
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=65.08 E-value=23 Score=34.64 Aligned_cols=96 Identities=10% Similarity=0.154 Sum_probs=65.2
Q ss_pred cCHHHHHHHHHHHhCCCC-CHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHHHhccc---chhhhhhcchHHHHH
Q 011515 17 PDWAMNIEICDMLNHDPG-QAKDVV-------KGIKKRIGSRNSKVQLLALTLLETIIKNCG---DIVHMHVAEKNVLHE 85 (484)
Q Consensus 17 ~Dw~~ileICD~In~~~~-~akeAv-------raIrKRL~s~np~vqllAL~LLE~cVKNCG---~~Fh~eVask~FLne 85 (484)
.||...++-+|++...-. .+++++ +-+.-|+...|+++.+.+|.+|..++.-.+ ++|+..-+ .-|+--
T Consensus 58 ~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~lP~ 136 (266)
T 2of3_A 58 KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFVPY 136 (266)
T ss_dssp SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHHHH
Confidence 488888877777665332 344433 334568889999999999999999987654 34554333 246666
Q ss_pred HHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 86 MVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 86 LvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
|+.-+-. ....||+++.+++..-..-+.
T Consensus 137 LveKlGd-~k~~vR~~~r~il~~l~~v~~ 164 (266)
T 2of3_A 137 LLLKTGE-AKDNMRTSVRDIVNVLSDVVG 164 (266)
T ss_dssp HHHGGGC-SSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhCC-ChHHHHHHHHHHHHHHHHHCC
Confidence 5544432 346899999999988776653
No 51
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=62.68 E-value=19 Score=32.63 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
++..|.+-|++.++.++..|+..|..+.... ..+...+.+...+..|+++++. .+..|++.++..|..-.
T Consensus 55 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~-~~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 55 ALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS-PNEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHhh
Confidence 4556667778889999999999999988754 3456677777889999999987 47889998888876664
No 52
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=60.36 E-value=29 Score=35.44 Aligned_cols=74 Identities=12% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~a 112 (484)
.++..|.+-|.+.++.++..|+..|-.+...+ ..+...+.....+..|++++....+..|+..++..|......
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~ 233 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDS-PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG 233 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 37778888889999999999999999988765 345556666778889999986667788998888888776654
No 53
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=59.59 E-value=23 Score=35.48 Aligned_cols=71 Identities=8% Similarity=0.114 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
|+..|.+-|.+.++.++..|...|-.|..+.+......|.+...+..|++++....+..+++.++..|...
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 57788888999999999999999999987644556677877888999999865545778888877776433
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.90 E-value=30 Score=30.56 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=49.0
Q ss_pred CCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCC
Q 011515 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (484)
Q Consensus 15 ~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~ 94 (484)
..+|+..-...+..+..-. ..+++..|.+.|.+.++.+...|+..|..+ +..+.+..|.+++.. .
T Consensus 91 ~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 155 (211)
T 3ltm_A 91 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 155 (211)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------------CCHHHHHHHHHHHcC-C
Confidence 3456665555555554322 145777888888888888888888777554 123455566666643 4
Q ss_pred ChhHHHHHHHHHHHH
Q 011515 95 DTHVKEKILILIDTW 109 (484)
Q Consensus 95 d~~VkeKiLeLIq~W 109 (484)
+..||..++..|..+
T Consensus 156 ~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 156 DGWVRQSAADALGEI 170 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 566766666655544
No 55
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=57.26 E-value=33 Score=33.52 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHH---HHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVL---HEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 35 ~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FL---neLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.+.-....|..-++|+|.++-.-+|.+|..++...|..+ ...+ ..+.+++.. .|..||+-++..+-+-..
T Consensus 164 ~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~------~~~l~~~~~ia~ll~D-~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 164 GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISP------LKSLSVEKTVAPFVGD-KDVNVRNAAINVLVACFK 236 (266)
T ss_dssp CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGG------GGGGCHHHHHGGGGGC-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCc------cccccchHHHHHHHcC-CCHHHHHHHHHHHHHHHH
Confidence 345566667777889999999999999999999999873 2245 777777776 688999999888876555
Q ss_pred HhC
Q 011515 112 AFG 114 (484)
Q Consensus 112 aF~ 114 (484)
..+
T Consensus 237 ~~G 239 (266)
T 2of3_A 237 FEG 239 (266)
T ss_dssp HHT
T ss_pred Hhh
Confidence 444
No 56
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=56.64 E-value=1.7e+02 Score=29.58 Aligned_cols=163 Identities=15% Similarity=0.126 Sum_probs=100.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCC
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPR 117 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~ 117 (484)
+-+..|.+-+.....+.|-++|+.|-.||..- ..+...|....|+..|..++.. .+..|.+..|+++...-+.-.+
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~~~fI~~lyslv~s-~~~~V~k~AL~LL~v~V~~se~-- 235 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAHSDTIQWLYTLCAS-LSRLVVKTALKLLLVFVEYSEN-- 235 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHCHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHHHCGG--
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCCHHHHHHHHHHHcC-ccHHHHHHHHHHHHHHHccCcc--
Confidence 44556666667789999999999999999863 2344556689999999999985 5789999999999888775432
Q ss_pred CCchHHHHHHHHHHH-hcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHhHhhhcccCCCCCCHHHHHHHHHHH
Q 011515 118 ARYPQYYAAYQELLR-AGAVFPQRSERSAPVFTPPQTHPLTSYPQNFRNPEHQQEAAEASAESEFPTLSLTEIQNARGIM 196 (484)
Q Consensus 118 ~~~~~i~~~Y~~Lk~-kGi~FP~~~e~~~piftPp~~~p~Ss~P~~lr~a~~~~~~~e~~~~~e~~~~~lseLe~ak~nv 196 (484)
.++.+.++...... .|.. .+ .+ .-+. ..++- -.+.+...+.|
T Consensus 236 -~~~lv~~av~~v~~~~~~~----------p~-----------------~~-Lv~~-----L~~~~---~~D~elq~~am 278 (339)
T 3dad_A 236 -NAPLFIRAVNSVASTTGAP----------PW-----------------AN-LVSI-----LEEKN---GADPELLVYTV 278 (339)
T ss_dssp -GHHHHHHHHHHHHHHHCCC----------TT-----------------HH-HHHH-----HTTTT---SCCHHHHHHHH
T ss_pred -cchHHHHHHHHhhhccCCC----------cH-----------------HH-HHHH-----HhccC---CCCHHHHHHHH
Confidence 35555544443222 2211 00 00 0000 00010 12445555789
Q ss_pred HHHHHHHhhcCCCCCccCchHHHHHHHHHH--HHHHHHHHHHhhcc-CCHHHHHH
Q 011515 197 DVLAEMLNALDPNNKEGLRQEVIVDLVDQC--RTYKQRVVHLVNST-ADESLLCQ 248 (484)
Q Consensus 197 ~LL~EML~~~~P~~~e~~d~Eli~EL~~~C--r~~q~rV~rLI~~~-~DEelL~e 248 (484)
.|+|.+|.... + .+.-.++.+.. +.|+..|++++... .|-++..+
T Consensus 279 tLIN~lL~~ap-d------~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 279 TLINKTLAALP-D------QDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHCS-S------HHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHhcCC-C------hhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 99999999862 1 22223444333 35677788877665 46554444
No 57
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=56.28 E-value=32 Score=32.65 Aligned_cols=72 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.++..|.+-|++.++.+|..|...|-.+...+ ......|....-+..|+++++...+.++++.+...|...+
T Consensus 52 G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~-~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 52 RGILKLLQLLKVQNEDVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLS 123 (233)
T ss_dssp THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 36778888999999999999999999998743 3456678888899999999986567899998887776654
No 58
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.81 E-value=61 Score=28.22 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=45.9
Q ss_pred CcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCC
Q 011515 16 GPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD 95 (484)
Q Consensus 16 ~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d 95 (484)
.+||..-...+..+..-. ..+++..|.+.|++.++.+...|+..|..+ +..+.+..|++++.. .+
T Consensus 25 ~~~~~vr~~A~~~L~~~~--~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~d-~~ 89 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIG--DERAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-ED 89 (201)
T ss_dssp CSCHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SS
T ss_pred CCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CC
Confidence 346655444444443221 135677777777777887777777666433 233455666666654 45
Q ss_pred hhHHHHHHHHHHHH
Q 011515 96 THVKEKILILIDTW 109 (484)
Q Consensus 96 ~~VkeKiLeLIq~W 109 (484)
..||..++..+...
T Consensus 90 ~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 90 GWVRQSAAVALGQI 103 (201)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66776666665544
No 59
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=55.23 E-value=25 Score=31.80 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.++..|.+-|.+.++.++..|+..|..+...... ....+.+..++..|+++++.. +..|++.++..|..-.
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNE-QIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIA 208 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH-HHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH-HHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHh
Confidence 3677888888999999999999999999876643 334555678899999998764 7899999888887664
No 60
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=55.05 E-value=79 Score=34.80 Aligned_cols=84 Identities=10% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcc-hHHHHHHHHHhccCCChhHHHH
Q 011515 23 IEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAE-KNVLHEMVKIARKKPDTHVKEK 101 (484)
Q Consensus 23 leICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVas-k~FLneLvkLv~~k~d~~VkeK 101 (484)
+.++|++-++ .+.+..|..-|.+.+.++-+.|+.+|..+..|++.+++..|-+ ..=+..|+.+++.. ...||..
T Consensus 111 ~~~~d~f~~~----~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~-rE~iRne 185 (651)
T 3grl_A 111 SQFTEIFIKQ----QENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS-REVIRND 185 (651)
T ss_dssp HHHHHHHHHS----THHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS-SHHHHHH
T ss_pred HHHHHHHHcC----CccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc-hHHHHHH
Confidence 4456665444 3667788888899999999999999999999999988888873 46677788888764 4789999
Q ss_pred HHHHHHHHHH
Q 011515 102 ILILIDTWQE 111 (484)
Q Consensus 102 iLeLIq~Wa~ 111 (484)
.+.+|.....
T Consensus 186 allLL~~Lt~ 195 (651)
T 3grl_A 186 GVLLLQALTR 195 (651)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999888774
No 61
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=54.47 E-value=25 Score=35.98 Aligned_cols=74 Identities=11% Similarity=0.084 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.+.+..|.+.|.+.++.+++.|+..|-.++..........+.....+..|+++++...+..|+..++..|...+
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~ 146 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIA 146 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45688899999999999999999999888876653444456667889999998876544778877776665544
No 62
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=53.67 E-value=30 Score=33.95 Aligned_cols=73 Identities=5% Similarity=0.031 Sum_probs=55.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.++..|.+.|.+.++.++..|...|-.+...+.......+.+...+..|+.++... +..|++.++..|.....
T Consensus 318 ~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 318 NIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR 390 (450)
T ss_dssp THHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 35566777788889999999999998888765443333455667888899988764 78999999888877665
No 63
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=53.55 E-value=62 Score=28.20 Aligned_cols=81 Identities=14% Similarity=0.116 Sum_probs=54.2
Q ss_pred CCcCHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCC
Q 011515 15 IGPDWAMNIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKP 94 (484)
Q Consensus 15 ~~~Dw~~ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~ 94 (484)
..+|+..-...+..+..-. ..+++..|.+.|.+.++.+...|+..|..+ +..+.+..|.+++.. .
T Consensus 86 ~d~~~~vr~~a~~aL~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~d-~ 150 (201)
T 3ltj_A 86 KDEDGWVRQSAAVALGQIG--DERAVEPLIKALKDEDWFVRIAAAFALGEI------------GDERAVEPLIKALKD-E 150 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHC--CGGGHHHHHHHTTCSSHHHHHHHHHHHHHH------------TCGGGHHHHHHHTTC-S
T ss_pred cCCCHHHHHHHHHHHHHhC--cHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CCHHHHHHHHHHHcC-C
Confidence 3456665555555554322 235778888888999999999888887654 234566777777764 4
Q ss_pred ChhHHHHHHHHHHHHH
Q 011515 95 DTHVKEKILILIDTWQ 110 (484)
Q Consensus 95 d~~VkeKiLeLIq~Wa 110 (484)
+..||..++..|..+.
T Consensus 151 ~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 151 DGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6678877777776653
No 64
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=51.00 E-value=66 Score=34.49 Aligned_cols=91 Identities=9% Similarity=0.134 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHhCC
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQEAFGG 115 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k-~d~~VkeKiLeLIq~Wa~aF~~ 115 (484)
...+..|.+.|.+.++.+...|+.++..+++.||..|...+ ..++..|.+.+... .+..||..++..+..-...++.
T Consensus 638 ~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~ 715 (861)
T 2bpt_A 638 ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA 715 (861)
T ss_dssp HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence 34666777788788888999999999999999998766433 45666666666543 4578999999999888888764
Q ss_pred CCCCch-HHHHHHHHHHH
Q 011515 116 PRARYP-QYYAAYQELLR 132 (484)
Q Consensus 116 ~~~~~~-~i~~~Y~~Lk~ 132 (484)
. +. .+......|.+
T Consensus 716 ~---~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 716 D---FIPYLNDIMALCVA 730 (861)
T ss_dssp G---GHHHHHHHHHHHHH
T ss_pred h---HHHHHHHHHHHHHH
Confidence 2 33 33444444443
No 65
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.56 E-value=77 Score=27.81 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq 107 (484)
+++..|.+.|.+.++.+...|+..|..+ +..+.+..|++++.. .+..||..++..|.
T Consensus 50 ~~~~~L~~~l~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 50 RAVEPLIKALKDEDAWVRRAAADALGQI------------GDERAVEPLIKALKD-EDGWVRQSAAVALG 106 (211)
T ss_dssp GGHHHHHHHTTCSCHHHHHHHHHHHHHH------------CCGGGHHHHHHHTTC-SSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHHHhh------------CCHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 4455555555555555555555444322 123344445554433 34455555555444
No 66
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=49.45 E-value=1.3e+02 Score=32.66 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 35 QAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 35 ~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.-...+..|.+.|+..++.++..|+..|..++++||..+...+ ..++..|.++++.. ..+....+++.|..-..
T Consensus 439 ~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l--~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 439 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKY-QHKNLLILYDAIGTLAD 512 (852)
T ss_dssp THHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHH--HHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999998765433 56777777777542 33344344444444443
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=49.21 E-value=76 Score=26.07 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILIL 105 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeL 105 (484)
.+++..|.+.|.+.++.|...|+..|..+ ++.+.+..|.++++. .+..||..+...
T Consensus 72 ~~a~~~L~~~L~d~~~~VR~~A~~aL~~~------------~~~~a~~~L~~~l~d-~~~~vr~~A~~a 127 (131)
T 1te4_A 72 ERAVEPLIKLLEDDSGFVRSGAARSLEQI------------GGERVRAAMEKLAET-GTGFARKVAVNY 127 (131)
T ss_dssp HHHHHHHHHHHHHCCTHHHHHHHHHHHHH------------CSHHHHHHHHHHTTS-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------CcHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 45566666666666666666665555432 234556666666643 355666655543
No 68
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=48.09 E-value=1.1e+02 Score=32.82 Aligned_cols=77 Identities=13% Similarity=0.171 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG-~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
-...+..|...|.+.+.++...|+..|..+...|+ ..+...+ ..++..|.+.++. .+..||..++..|..|...+.
T Consensus 364 ~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 364 VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKD-PSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhCc
Confidence 34567778888899999999999999999999887 3343222 3456666666554 468999999999999999875
Q ss_pred C
Q 011515 115 G 115 (484)
Q Consensus 115 ~ 115 (484)
.
T Consensus 441 ~ 441 (876)
T 1qgr_A 441 E 441 (876)
T ss_dssp G
T ss_pred h
Confidence 3
No 69
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=47.47 E-value=50 Score=36.35 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
++..|.+-|++.++.++..|+..|-.|..+.. .....|.....+..|+++++. .+..|++.++..+..|+.
T Consensus 235 ~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~-~~~~~v~~~g~v~~Lv~lL~~-~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 235 GIPALVNMLGSPVDSVLFHAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 305 (780)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHST-THHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCh-hhHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhc
Confidence 56677778888999999999999999988754 344456566788899999986 467899999999999984
No 70
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=47.44 E-value=64 Score=32.40 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
++..|.+-|++.++.++..|+..|-.+..+... ....+.+...+..|+++++. .+.+|+..+...+..|+.
T Consensus 102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g~i~~L~~ll~~-~~~~~~~~~~~~L~~la~ 172 (529)
T 1jdh_A 102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNK-TNVKFLAITTDCLQILAY 172 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-hHHHHHHcCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHh
Confidence 566778888999999999999999988876533 34456677889999999986 467888888888888874
No 71
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=46.96 E-value=60 Score=34.38 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
..++..|.+.|++.++.++..|+..|-.+.++.. .....+.....+..|++++....+..|+..+...|...
T Consensus 13 ~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~L 84 (644)
T 2z6h_A 13 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 84 (644)
T ss_dssp TTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4467888888999999999999999999998774 33334455688999999988766788888887777654
No 72
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=46.88 E-value=34 Score=35.14 Aligned_cols=69 Identities=14% Similarity=0.214 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccch----------hhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDI----------VHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDT 108 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~----------Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~ 108 (484)
++..|..-|.+.++.++..|+..|..++..+... +...+.....++.|..|.. +.+..|++++..+|..
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~-~~~~~v~~~a~~il~~ 507 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ-NENDKIYEKAYKIIET 507 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG-CSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHH
Confidence 5666777778899999999999999999877532 3334445556666766654 4678899999888864
No 73
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=46.53 E-value=70 Score=32.71 Aligned_cols=73 Identities=8% Similarity=0.044 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc--hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD--IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~--~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~a 112 (484)
++..|.+-|.+.++.++..|+..|..+...++. .....+.....+..|+.++... +..|+..++..|..+...
T Consensus 384 ~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~al~aL~~l~~~ 458 (530)
T 1wa5_B 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-DNRIIEVTLDALENILKM 458 (530)
T ss_dssp CHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence 445666677788999999999999999988765 4444555667888888888763 789999999888877654
No 74
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=46.50 E-value=62 Score=32.52 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
...++..|.+-|++.++.++..|+..|..+..+.. .....+.....+..|++++....+..++......|...
T Consensus 15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~l 87 (529)
T 1jdh_A 15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL 87 (529)
T ss_dssp --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35578888999999999999999999999987653 22334455678899999887666788888888877764
No 75
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=46.18 E-value=43 Score=34.90 Aligned_cols=73 Identities=8% Similarity=0.112 Sum_probs=57.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.++..|.+-|.+.++.++..|...|-.|..+.+......|.+...+..|++++....+..|++.++..|....
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs 315 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHc
Confidence 3577888889999999999999999888765444566777777889999998655557889988887764444
No 76
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=46.04 E-value=31 Score=37.32 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=55.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
++..|.+-|.+.++.++..|...|-.|...++......|....-+..|+++++...+..+++.+...|...
T Consensus 91 ~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL 161 (584)
T 3l6x_A 91 GIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL 161 (584)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 56677888899999999999999999988655667788888889999999998755666666655444333
No 77
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=46.01 E-value=60 Score=31.72 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHhcc-cchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSR--NSKVQLLALTLLETIIKNC-GDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQE 111 (484)
Q Consensus 37 keAvraIrKRL~s~--np~vqllAL~LLE~cVKNC-G~~Fh~eVask~FLneLvkLv~~k-~d~~VkeKiLeLIq~Wa~ 111 (484)
.+.+..|...+.+. ++.+...||..|..+++.+ +..+...+ ..++..+.+++... ++..||..++..+..|..
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 46777788888888 9999999999999999987 44333222 34666677777654 268999999998888753
No 78
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=45.78 E-value=50 Score=33.48 Aligned_cols=68 Identities=15% Similarity=0.103 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
...+..|.+.+...++.|...++..|..+++.+|..|.. ..|+..|.++... .+..||+.+.+.+...
T Consensus 518 ~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~----~~~~p~l~~l~~d-~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 518 KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQ----SEVKPILEKLTQD-QDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHH----HHHHHHHHHHTTC-SSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhH----HHHHHHHHHHcCC-CchhHHHHHHHHHHHh
Confidence 456667778888899999999999999999999876642 4666667776543 5789999888877653
No 79
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=44.80 E-value=92 Score=30.12 Aligned_cols=87 Identities=11% Similarity=0.144 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHhcccchhhhhhc--------chHHHHH--
Q 011515 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIG----SRNSKVQLLALTLLETIIKNCGDIVHMHVA--------EKNVLHE-- 85 (484)
Q Consensus 20 ~~ileICD~In~~~~~akeAvraIrKRL~----s~np~vqllAL~LLE~cVKNCG~~Fh~eVa--------sk~FLne-- 85 (484)
+.+.=||++.+..-...+.+..+|++-|. ..+.. .+..|=.+++.||..+...-. .+..|+.
T Consensus 175 g~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~----~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md~~f 250 (284)
T 2vso_E 175 GLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEE----TLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLF 250 (284)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHHHHHHHHTSCC--------CHHHHHHHHH
T ss_pred hHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHH----HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHH
Confidence 34666899999888777777666666665 45544 466666677778987764321 1344554
Q ss_pred --HHHHhc-cCCChhHHHHHHHHHHHHH
Q 011515 86 --MVKIAR-KKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 86 --LvkLv~-~k~d~~VkeKiLeLIq~Wa 110 (484)
|.+++. .+.+.+||-+|..+|..-.
T Consensus 251 ~~l~~l~~~~~ls~RirFml~dlidLR~ 278 (284)
T 2vso_E 251 GILDNIIQTAKISSRIKFKLIDIKELRH 278 (284)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHHhc
Confidence 445554 3567888888888886544
No 80
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=44.77 E-value=43 Score=35.74 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=51.1
Q ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHH
Q 011515 23 IEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKI 102 (484)
Q Consensus 23 leICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKi 102 (484)
+.++.+.+.+++-..-++..|+|-|+++|+.+..+||..|-.+. +. +++ +.++..+.++++. .++.||+++
T Consensus 92 l~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~---~~----~~~-~~l~~~l~~~L~~-~~~~VRk~A 162 (618)
T 1w63_A 92 LGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG---SS----EMC-RDLAGEVEKLLKT-SNSYLRKKA 162 (618)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC---CH----HHH-HHHHHHHHHHHHS-CCHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC---CH----HHH-HHHHHHHHHHHcC-CCHHHHHHH
Confidence 34555555555555678889999999999999988888775542 11 222 3455666666654 466777777
Q ss_pred HHHHHHHH
Q 011515 103 LILIDTWQ 110 (484)
Q Consensus 103 LeLIq~Wa 110 (484)
...+....
T Consensus 163 ~~al~~l~ 170 (618)
T 1w63_A 163 ALCAVHVI 170 (618)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665444
No 81
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=44.10 E-value=22 Score=29.93 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.2
Q ss_pred CCChhHHHHHHHHHHHHHHHhCC
Q 011515 93 KPDTHVKEKILILIDTWQEAFGG 115 (484)
Q Consensus 93 k~d~~VkeKiLeLIq~Wa~aF~~ 115 (484)
..+.+|+..+..||..|......
T Consensus 66 ~~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 66 CSDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999998864
No 82
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=44.06 E-value=1.1e+02 Score=30.97 Aligned_cols=73 Identities=11% Similarity=0.174 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
...+..|.+.|+..+..+...|+..|..+++.+|..|+ -..++..|.++.. ..+..||..++..|......++
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~----~~~llp~l~~~~~-~~~~~~R~~a~~~l~~l~~~~~ 512 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWA----HATIIPKVLAMSG-DPNYLHRMTTLFCINVLSEVCG 512 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHH----HHHTHHHHHHTTT-CSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHhcC
Confidence 45677777778888888888888888888888887654 2456666666554 3466888888888888877664
No 83
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=43.84 E-value=66 Score=34.09 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
++..|.+-|++.++.++..|+..|-.+..+... ....|.....+..|+++++.. +.+++..++..|..|+.
T Consensus 99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~-~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~La~ 169 (644)
T 2z6h_A 99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-AKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQILAY 169 (644)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTT-HHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcch-hHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHHHh
Confidence 566777788899999999999999998877633 344566678999999999864 56788888888888874
No 84
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=42.61 E-value=65 Score=35.44 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
+..++..|.+-|.+.++.++..|+..|-.+.++... -+..+....++..|+++++...+..||..++..|...
T Consensus 148 ~~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~-~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L 220 (780)
T 2z6g_A 148 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS-RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL 220 (780)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHH-HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChh-HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 356788888888899999999999999999887643 3344446689999999987656788888888777664
No 85
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=42.51 E-value=79 Score=33.68 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHhCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh
Q 011515 18 DWAMNIEICDMLNHDPGQA---KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV 73 (484)
Q Consensus 18 Dw~~ileICD~In~~~~~a---keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~F 73 (484)
+.+...+.+..|-.-...+ ..|+..|.+-|.++++++++.||..|..++......|
T Consensus 290 ~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~ 348 (618)
T 1w63_A 290 GNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV 348 (618)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH
Confidence 3344555554443222222 2477778888889999999999999988887755433
No 86
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=42.27 E-value=62 Score=34.73 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG 70 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG 70 (484)
.+.|+..|.+=|.++++++++.||..|..++...+
T Consensus 327 ~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~ 361 (621)
T 2vgl_A 327 LVRACNQLGQFLQHRETNLRYLALESMCTLASSEF 361 (621)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccC
Confidence 35677888877888999999999999988887654
No 87
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=41.51 E-value=48 Score=34.26 Aligned_cols=70 Identities=14% Similarity=0.317 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc-----hhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD-----IVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~-----~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
++..|..-|.+++++++..+|..|..+++-+.. .|...|-+-..++.|..|.. +.+.+|.+|+..+|..+
T Consensus 402 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~-~~n~~i~~~A~~iie~y 476 (510)
T 3ul1_B 402 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR-HENESVYKASLNLIEKY 476 (510)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGG-CSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 445555667889999999999999888764322 23334444455666666543 46789999999999765
No 88
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=40.77 E-value=3e+02 Score=29.26 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=62.4
Q ss_pred HHHHHHhCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc----hhhhhhcchHHHHHHHHHhccC-CC
Q 011515 24 EICDMLNHD---PGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGD----IVHMHVAEKNVLHEMVKIARKK-PD 95 (484)
Q Consensus 24 eICD~In~~---~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~----~Fh~eVask~FLneLvkLv~~k-~d 95 (484)
++|+.+... ...-...+..|.+.|++. +.++..|...|..+++.|+. .+...+ ..++..|.++++.. .+
T Consensus 437 ~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~ 513 (861)
T 2bpt_A 437 RIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNE 513 (861)
T ss_dssp HHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCG
T ss_pred HHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcc
Confidence 355555432 344678888888888776 99999999999999999973 232222 45667777777642 33
Q ss_pred hhHHHHHHHHHHHHHHHhCC
Q 011515 96 THVKEKILILIDTWQEAFGG 115 (484)
Q Consensus 96 ~~VkeKiLeLIq~Wa~aF~~ 115 (484)
..||..+++.|.......+.
T Consensus 514 ~~vr~~a~~al~~l~~~~~~ 533 (861)
T 2bpt_A 514 FNARASAFSALTTMVEYATD 533 (861)
T ss_dssp GGHHHHHHHHHHHHHHHCCG
T ss_pred hHHHHHHHHHHHHHHHHcch
Confidence 68998888888888777653
No 89
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=40.50 E-value=25 Score=28.64 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 011515 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (484)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kG 134 (484)
++.+.++.|..+..-.-.=.|-+.=+.-+....+..+++++.+||..|....+. -..+..+++.|++-|
T Consensus 17 ~~~ia~~lg~~Wk~Lar~Lg~~~~~I~~I~~~~~~d~~eq~~~mL~~W~~~~g~----~At~~~L~~AL~~~~ 85 (99)
T 1fad_A 17 FDIVCDNVGRDWKRLARELKVSEAKMDGIEEKYPRSLSERVRESLKVWKNAEKK----NASVAGLVKALRTCR 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGG----GGSHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCC----CCcHHHHHHHHHHCC
Confidence 444445555433322222223333223333223346999999999999998743 245677788887765
No 90
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=40.37 E-value=25 Score=30.04 Aligned_cols=70 Identities=10% Similarity=0.179 Sum_probs=42.6
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcC
Q 011515 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (484)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi 135 (484)
|+.+.+|-|.....-...-.|-+.=+..++...+..+++++.++|..|....+. -..+..+++.|++-|.
T Consensus 27 l~~Ia~~LG~~Wk~LAR~LGlse~dId~I~~~~p~dl~eq~~qmL~~W~~r~G~----~AT~~~L~~AL~~~~l 96 (115)
T 2o71_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGK----QATFQSLHNGLRAVEV 96 (115)
T ss_dssp HHHHHHHCCTTHHHHHHHTTCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHGG----GCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCc----CcHHHHHHHHHHHcCC
Confidence 344456666544432222233333333343333458999999999999998753 2346678888888774
No 91
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=39.73 E-value=28 Score=29.66 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcC
Q 011515 62 LETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (484)
Q Consensus 62 LE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi 135 (484)
|+.+.+|-|.....-...-.|-+.=+..++...+..+++++.++|..|.+.-+.. ..+..+++.|++-|.
T Consensus 27 l~~Ia~~lG~~Wk~LAR~LGlse~dId~I~~~~p~~l~eq~~qmL~~W~~r~G~~----AT~~~L~~AL~~~~l 96 (114)
T 2of5_A 27 INQLAQRLGPEWEPMVLSLGLSQTDIYRCKANHPHNVQSQVVEAFIRWRQRFGKQ----ATFQSLHNGLRAVEV 96 (114)
T ss_dssp HHHHHHTCCSTHHHHHHTTTCCHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCcC----cHHHHHHHHHHHcCC
Confidence 4455677776555433333444443333443334589999999999999987532 345677888888764
No 92
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=39.06 E-value=74 Score=32.37 Aligned_cols=73 Identities=15% Similarity=0.197 Sum_probs=58.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.++..|.+-|++.++.++..|...|-.+.... ......|.+..-+..|+++++...+..|++.+...|..-+.
T Consensus 44 g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~ 116 (457)
T 1xm9_A 44 GGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS 116 (457)
T ss_dssp THHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc
Confidence 35677889999999999999999999988742 45666777778899999999865688999988877766553
No 93
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=37.74 E-value=1.2e+02 Score=33.14 Aligned_cols=75 Identities=13% Similarity=0.117 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCC
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGG 115 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~ 115 (484)
..+..|.+.+.++++.+..-|..+|..|++-||..|...+. .|+..|.+.+.. .+..|+.-+...|......++.
T Consensus 629 ~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~--~~lp~l~~~l~~-~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 629 NILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA--DFMPILGTNLNP-EFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp CHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHHHHTCCT-TSHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHhhH
Confidence 35778888899999999999999999999999988876654 478887777743 3578999888888888887753
No 94
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=36.75 E-value=87 Score=32.98 Aligned_cols=87 Identities=9% Similarity=0.124 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhCCCCCHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChh
Q 011515 20 AMNIEICDMLNHDPGQAK--DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTH 97 (484)
Q Consensus 20 ~~ileICD~In~~~~~ak--eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~ 97 (484)
..++.+..+.+..++... +.+..|.+.|..+++.|+..|+.+|..+.++.+......+ ...++..|.+.+.. .++-
T Consensus 140 ~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l-~~~~~~~Ll~~l~~-~~~~ 217 (591)
T 2vgl_B 140 TAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL-NPQNINKLLTALNE-CTEW 217 (591)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC-HHHHHHHHHHHHHH-CCHH
T ss_pred HHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc-cHHHHHHHHHcCCC-CCch
Confidence 455666677777777655 4778899999999999999999999888776543311111 12333444333332 3455
Q ss_pred HHHHHHHHHHH
Q 011515 98 VKEKILILIDT 108 (484)
Q Consensus 98 VkeKiLeLIq~ 108 (484)
++-+++.++..
T Consensus 218 ~q~~il~~l~~ 228 (591)
T 2vgl_B 218 GQIFILDCLSN 228 (591)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55566655533
No 95
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=36.17 E-value=98 Score=31.93 Aligned_cols=72 Identities=15% Similarity=0.090 Sum_probs=46.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
+.+..|.+.|++.++.+|+.|+.-+..+..+....-..+|.+...+..|+++++...+..++..+...|...
T Consensus 76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~ni 147 (529)
T 3tpo_A 76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNI 147 (529)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 346677778888888888888877776654433332335556678888888887655566666555444443
No 96
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=35.70 E-value=1.1e+02 Score=32.78 Aligned_cols=80 Identities=10% Similarity=0.179 Sum_probs=53.2
Q ss_pred HHHHHHHhCCC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc--CCChhHH
Q 011515 23 IEICDMLNHDP-GQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK--KPDTHVK 99 (484)
Q Consensus 23 leICD~In~~~-~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~--k~d~~Vk 99 (484)
=|.|+.+...+ ..+.+.++.|.+++...++.++..+|+.+--+...++. + ++.+..+.+.... ..+.+||
T Consensus 505 GEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~-----~--~~~i~~~l~~~~~~~~~d~evr 577 (621)
T 2vgl_A 505 GEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE-----V--KATIQDVLRSDSQLKNADVELQ 577 (621)
T ss_dssp HHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG-----G--HHHHHHHHSSHHHHSCSSHHHH
T ss_pred cchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH-----H--HHHHHHHHHHHhcCCCCCHHHH
Confidence 45667776544 34678899999999999999999988877766554432 1 1222222222233 5788999
Q ss_pred HHHHHHHHHH
Q 011515 100 EKILILIDTW 109 (484)
Q Consensus 100 eKiLeLIq~W 109 (484)
+|+.++....
T Consensus 578 dRA~~y~~Ll 587 (621)
T 2vgl_A 578 QRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876554
No 97
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=34.93 E-value=46 Score=28.69 Aligned_cols=69 Identities=12% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHHHHHhcccchhhhhhcchHHHHH-HHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 011515 61 LLETIIKNCGDIVHMHVAEKNVLHE-MVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (484)
Q Consensus 61 LLE~cVKNCG~~Fh~eVask~FLne-LvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kG 134 (484)
.++.+.++-|..+......=.|-+. |..|-... +..+++++.+||..|...-+.. ..+..+++.|++-|
T Consensus 8 ~f~~Ia~~lG~~Wk~LAR~LGlse~dId~Ie~~~-p~dl~eq~~~mL~~W~~r~G~~----ATv~~L~~AL~~i~ 77 (122)
T 3ezq_B 8 AFNVICDNVGKDWRRLARQLKVSDTKIDSIEDRY-PRNLTERVRESLRIWKNTEKEN----ATVAHLVGALRSCQ 77 (122)
T ss_dssp HHHHHHTTCCTTHHHHHHHTTCCHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHCTTT----CCHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHhCCCHHHHHHHHHHC-CCCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHCC
Confidence 3455566666554432222233333 33333332 3359999999999999986542 34566677776544
No 98
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=34.81 E-value=3.4e+02 Score=28.89 Aligned_cols=97 Identities=10% Similarity=0.028 Sum_probs=67.3
Q ss_pred CCcCHHHHHHHHHHHhCCCCC---------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchh-hhhhcchHHHH
Q 011515 15 IGPDWAMNIEICDMLNHDPGQ---------AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIV-HMHVAEKNVLH 84 (484)
Q Consensus 15 ~~~Dw~~ileICD~In~~~~~---------akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~F-h~eVask~FLn 84 (484)
..++|..-...|..+..=..+ -...+..|.+-|+..++.+...|+..|..+.+.++..+ +..+ -...+.
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~ 454 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQ 454 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHH
Confidence 346787555555444321111 23467788888999999999999999999999987654 2222 245666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHhC
Q 011515 85 EMVKIARKKPDTHVKEKILILIDTWQEAFG 114 (484)
Q Consensus 85 eLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~ 114 (484)
.|.+.+.. +..|+..++..|......++
T Consensus 455 ~l~~~l~~--~~~v~~~a~~al~~l~~~~~ 482 (876)
T 1qgr_A 455 CLIEGLSA--EPRVASNVCWAFSSLAEAAY 482 (876)
T ss_dssp HHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence 66666655 37899999999888888764
No 99
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.15 E-value=83 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILID 107 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq 107 (484)
.+++..|.+.|++.++.+...|+..|.. +++.+.+..|.++++. ..|+..+...+.
T Consensus 191 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~------------~~~~~~~~~L~~~l~d---~~vr~~a~~aL~ 246 (280)
T 1oyz_A 191 SDIRDCFVEMLQDKNEEVRIEAIIGLSY------------RKDKRVLSVLCDELKK---NTVYDDIIEAAG 246 (280)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHH------------TTCGGGHHHHHHHHTS---SSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH------------hCCHhhHHHHHHHhcC---ccHHHHHHHHHH
Confidence 3455555555555555555555544432 2245566666666654 125555544443
No 100
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli}
Probab=33.65 E-value=2.5e+02 Score=25.94 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHH--------HHHHHHhhc-------------cCCHHHH
Q 011515 188 EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYK--------QRVVHLVNS-------------TADESLL 246 (484)
Q Consensus 188 eLe~ak~nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q--------~rV~rLI~~-------------~~DEelL 246 (484)
-++++...+..|.+.|..+.. ...+.+.+.++|.....+| ..|.++... .-+.+++
T Consensus 12 F~~Ea~e~L~~l~~~Ll~le~---~~~d~~~l~~ifR~~HTlKG~a~~~g~~~i~~laH~~E~~l~~~r~g~~~~~~~~~ 88 (225)
T 2lp4_A 12 FFDEADELLADMEQHLLDLVP---ESPDAEQLNAIFRAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDII 88 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT---TSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhhhHHHhcCHHHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 488899999999999988743 2335788899988888776 222222221 1478899
Q ss_pred HHHhhhhHHHHHHHHHHH
Q 011515 247 CQGLQLNDDLQRLLAKHE 264 (484)
Q Consensus 247 ~eLL~aNDeL~~vL~rYe 264 (484)
.-+|..-|.|...+..+.
T Consensus 89 ~ll~~~~D~l~~~l~~~~ 106 (225)
T 2lp4_A 89 NLFLETKDIMQEQLDAYK 106 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999997765
No 101
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=33.19 E-value=91 Score=29.47 Aligned_cols=71 Identities=6% Similarity=0.013 Sum_probs=52.7
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNS--KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 39 AvraIrKRL~s~np--~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.+..|.+.|.+.++ .+|..|...|-.+..+. ......|....-+..|+++++. .+..|++.....|..++.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s-~~~~vq~~Aa~aL~nLa~ 81 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKV-QNEDVQRAVCGALRNLVF 81 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGC-CCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 35667778888887 78877776665555433 2345567777888999999976 578999999999988864
No 102
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=33.16 E-value=1.5e+02 Score=30.51 Aligned_cols=70 Identities=13% Similarity=0.063 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
++..|.+-|.+.+..++..|...|-.+..++.......+.+...+.-|+.+++. .|.+|+..+|+.|..-
T Consensus 359 ~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 428 (510)
T 3ul1_B 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 428 (510)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 556677788899999999999888888887765555566777888889998876 4778888887766543
No 103
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=32.20 E-value=1.2e+02 Score=32.04 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 32 DPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 32 ~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
.++-....+..|++-|.+.++.|...|...|-.+.+.+...+. ..+|++.|.+++.. .++.|+.-++..|.....
T Consensus 115 ~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~----~~~~~~~l~~lL~d-~d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 115 VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE----DQGFLDSLRDLIAD-SNPMVVANAVAALSEISE 189 (591)
T ss_dssp SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH----HHHHHHHHHHTTSC-SCHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc----cccHHHHHHHHhCC-CChhHHHHHHHHHHHHHh
Confidence 3334566667788889999999999999888888876544332 24799999999875 578899988888877654
No 104
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=32.16 E-value=78 Score=32.23 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=55.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHH
Q 011515 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 40 vraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~ 111 (484)
+..|.+.|++.++.++..|+..|..+..+- ......|.....+..|+++++. .+..|++.....|..+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhc
Confidence 456778888899999999999888876543 3445578888899999999985 577899888888887764
No 105
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=29.35 E-value=1.5e+02 Score=27.10 Aligned_cols=20 Identities=5% Similarity=0.195 Sum_probs=10.1
Q ss_pred HHHHHHhhccCCHHHHHHHh
Q 011515 231 QRVVHLVNSTADESLLCQGL 250 (484)
Q Consensus 231 ~rV~rLI~~~~DEelL~eLL 250 (484)
+.|..++....|++++.+++
T Consensus 255 ~~L~~~l~~~~~~~~~~~~~ 274 (280)
T 1oyz_A 255 PVLDTMLYKFDDNEIITSAI 274 (280)
T ss_dssp HHHHHHHTTSSCCHHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHH
Confidence 44455554445555555444
No 106
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=27.70 E-value=75 Score=26.86 Aligned_cols=72 Identities=17% Similarity=0.082 Sum_probs=44.6
Q ss_pred HHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhc
Q 011515 60 TLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAG 134 (484)
Q Consensus 60 ~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kG 134 (484)
..|..+.++-|..+..-...=.|-+.=+..+....+..+++++..|+..|...-++. -..+..+++.|++-|
T Consensus 14 ~~l~~ia~~lg~dWk~LAr~Lg~s~~~I~~I~~~~~~~l~eq~~~mL~~W~~~~g~~---~Atv~~L~~aL~~~~ 85 (118)
T 2of5_H 14 SNLLSVAGRLGLDWPAVALHLGVSYREVQRIRHEFRDDLDEQIRHMLFSWAERQAGQ---PGAVGLLVQALEQSD 85 (118)
T ss_dssp HHHHHHHHTCCTTHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTSSC---SSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccCCC---CcHHHHHHHHHHHcC
Confidence 345666677776554322223343333333443334578999999999999986432 245677788887755
No 107
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A
Probab=27.48 E-value=3.1e+02 Score=23.84 Aligned_cols=75 Identities=17% Similarity=0.166 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccCchHHHHHHHHHHHHHH--------HHHHHHhhc-------------cCCHHHH
Q 011515 188 EIQNARGIMDVLAEMLNALDPNNKEGLRQEVIVDLVDQCRTYK--------QRVVHLVNS-------------TADESLL 246 (484)
Q Consensus 188 eLe~ak~nv~LL~EML~~~~P~~~e~~d~Eli~EL~~~Cr~~q--------~rV~rLI~~-------------~~DEelL 246 (484)
-++++...+..|++.|..+..+ ..+.+.+.+++....+++ ..|..+... .-+.+++
T Consensus 16 FleEa~E~L~~le~~Ll~le~~---~~d~e~l~~lfR~~HTLKGsA~~~G~~~i~~laH~lE~ll~~lr~g~~~~~~~l~ 92 (144)
T 3kyj_A 16 YADDGAQALDAMEASLLALQAG---EDAAAHVGPLFRAVHTFKGNSRVLGLSVVESRAHLCEDLIGLVRDAGVPMDGEIV 92 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHhHhhHHHhcCchHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 4778888888888887776322 235678888887777666 122222211 2478899
Q ss_pred HHHhhhhHHHHHHHHHHHh
Q 011515 247 CQGLQLNDDLQRLLAKHES 265 (484)
Q Consensus 247 ~eLL~aNDeL~~vL~rYe~ 265 (484)
..++..-|.|...++.++.
T Consensus 93 dlll~~~D~l~~lv~~~~~ 111 (144)
T 3kyj_A 93 EILLFASDTLRAMLEETAA 111 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987775
No 108
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=26.77 E-value=1.9e+02 Score=28.28 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 36 AKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 36 akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
.+..+-.|-.-|+|+|.+++..||++|-.+.--.|..=| . ++.++++..+++.. |+.+++++|..+..-.
T Consensus 148 ~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i---~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~il 217 (265)
T 3b2a_A 148 SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGH---L-TLILDEIPSLLQND-NEFIVELALDVLEKAL 217 (265)
T ss_dssp CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCC---G-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHH---H-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHH
Confidence 566777777777999999999999887666555543322 2 45677788888876 8999999998887543
No 109
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=26.04 E-value=78 Score=26.34 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcC
Q 011515 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (484)
Q Consensus 95 d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi 135 (484)
+..+++++..||..|...-+.. ..+..+++.|++-|.
T Consensus 54 p~~~~eq~~~mL~~W~~~~g~~----AT~~~L~~aL~~i~r 90 (111)
T 2yqf_A 54 PNSLLEQSVALLNLWVIREGQN----ANMENLYTALQSIDR 90 (111)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTS----CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhCCC----chHHHHHHHHHHcCc
Confidence 4589999999999999986542 346777888887664
No 110
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=25.90 E-value=2.3e+02 Score=29.04 Aligned_cols=70 Identities=13% Similarity=0.070 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
++..|..-|.+.+..++..|...|-.+..++...-...+.+...+.-|+.++.. .|.+|+..+|+.|..-
T Consensus 378 ~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~-~d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 378 LVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA-KDTKIIQVILDAISNI 447 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC-SCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcC-CCHHHHHHHHHHHHHH
Confidence 456677778889999999998888888777655444556677888899999876 4778888777666543
No 111
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=25.87 E-value=57 Score=27.18 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=27.5
Q ss_pred ChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhcC
Q 011515 95 DTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQELLRAGA 135 (484)
Q Consensus 95 d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~Lk~kGi 135 (484)
+..+++++.+||..|...-+.. ..+..+++.|++-|.
T Consensus 53 ~~~~~eq~~~mL~~W~~r~G~~----AT~~~L~~AL~~~~~ 89 (110)
T 1wxp_A 53 SEDMKMRAKQLLVAWQDQEGVH----ATPENLINALNKSGL 89 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHGGG----CCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHhhCcC----cHHHHHHHHHHHcCc
Confidence 4579999999999999886432 345677777877553
No 112
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=25.34 E-value=1.6e+02 Score=27.88 Aligned_cols=43 Identities=16% Similarity=0.213 Sum_probs=33.9
Q ss_pred HHHHHHHhhcCCCCCc-cCchHHHHHHHHHHHHHHHHHHHHhhc
Q 011515 197 DVLAEMLNALDPNNKE-GLRQEVIVDLVDQCRTYKQRVVHLVNS 239 (484)
Q Consensus 197 ~LL~EML~~~~P~~~e-~~d~Eli~EL~~~Cr~~q~rV~rLI~~ 239 (484)
--|..|..++.-+++. ..-.+.++++.+.|+.++.++++|+.+
T Consensus 48 aAL~~MVanLT~gKkky~~~e~~~~~i~~~~~~l~~~ll~l~d~ 91 (214)
T 1o5h_A 48 CALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKK 91 (214)
T ss_dssp HHHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888876552 234577999999999999999999964
No 113
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=25.27 E-value=53 Score=33.29 Aligned_cols=49 Identities=27% Similarity=0.167 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc
Q 011515 22 NIEICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG 70 (484)
Q Consensus 22 ileICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG 70 (484)
++.+..++...++-.+.-+..++.-+..+|+-|+..||.+|-.+-++-+
T Consensus 160 ~l~~~kL~~~~pe~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~ 208 (355)
T 3tjz_B 160 LVSSLHLLKCSFDVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR 208 (355)
T ss_dssp HHHHHHHTTTCHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch
Confidence 3444444555544444445556666778888888888888887766543
No 114
>4f52_E Glomulin; cullin-ring E3 ligase, inhibitor, cell cycle-ligase-signalin complex; 3.00A {Homo sapiens}
Probab=24.89 E-value=2.4e+02 Score=30.41 Aligned_cols=88 Identities=16% Similarity=0.197 Sum_probs=63.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccc-chhhhhhcc----hHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCG-DIVHMHVAE----KNVLHEMVKIARKKPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG-~~Fh~eVas----k~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa~a 112 (484)
+.+..|..=|++....++..+|.|++.++++-+ ..++....+ ..|...|++++...+...+|++.+.+++.-=..
T Consensus 317 ~~l~~l~~lL~~~~~~~~~kGL~Ll~~ll~~l~~~sl~~~~ld~~~~~~~~q~L~~v~~~~P~~~lR~~a~~vl~~~I~~ 396 (596)
T 4f52_E 317 FNMGHIEVFLQRTEESVISKGLELLENSLLRIEDNSLLYQYLEIKSFLTVPQGLVKVMTLCPIETLRKKSLAMLQLYINK 396 (596)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSSCTTCBCGGGGGSHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHhHHHHHHHHHHhccCccCChhhhchhhHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHh
Confidence 345567777788899999999999999988764 234444333 456666777776678899999999999998888
Q ss_pred hCCCCCCchHHHHH
Q 011515 113 FGGPRARYPQYYAA 126 (484)
Q Consensus 113 F~~~~~~~~~i~~~ 126 (484)
|... +||.-+..+
T Consensus 397 ~~~e-~R~~iL~~L 409 (596)
T 4f52_E 397 LDSQ-GKYTLFRCL 409 (596)
T ss_dssp BCHH-HHHHHHHHH
T ss_pred CChH-HHHHHHHHH
Confidence 8743 455544433
No 115
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=24.66 E-value=1.6e+02 Score=23.94 Aligned_cols=57 Identities=5% Similarity=0.166 Sum_probs=43.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHH
Q 011515 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTW 109 (484)
Q Consensus 40 vraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~W 109 (484)
+..|.+.|++.++.+...|+..|.. +++++.+..|+++++. .+..||..+...|...
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~------------~~~~~a~~~L~~~L~d-~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGN------------FQDERAVEPLIKLLED-DSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGG------------GCSHHHHHHHHHHHHH-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHcC-CCHHHHHHHHHHHHHh
Confidence 5788888999999999999887643 2345677888887764 5778999888777654
No 116
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=24.52 E-value=2.4e+02 Score=27.92 Aligned_cols=71 Identities=13% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 011515 53 KVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPD-THVKEKILILIDTWQEAFGGPRARYPQYYAAYQE 129 (484)
Q Consensus 53 ~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d-~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~ 129 (484)
...=+|+.++|++.+.- ..+ +.+.+++|++|++.-++ ..-|.+.+.-.-.|...+.+.+.+.|.+..+.-.
T Consensus 71 sa~DLa~llvev~~~~~-----~~~-~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~ 142 (312)
T 2wpv_A 71 SGTDLIFYLLEVYDLAE-----VKV-DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142 (312)
T ss_dssp HHHHHHHHHHHHHHHTT-----CCC-SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Confidence 33447778888888864 222 46788888888876332 2348899999999999997644456776554433
No 117
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=24.14 E-value=2.3e+02 Score=32.31 Aligned_cols=73 Identities=12% Similarity=0.210 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccC-CChhHHHHHHHHHHHHHHHh
Q 011515 39 VVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKK-PDTHVKEKILILIDTWQEAF 113 (484)
Q Consensus 39 AvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k-~d~~VkeKiLeLIq~Wa~aF 113 (484)
.+..|.+.|++.++++...++.+|..+++.|+..+...+ ..++..+.++++.+ ....|+..++..+..|...+
T Consensus 435 ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 435 IVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 345566678899999999999999999999876554322 46777777777653 23589999999999887644
No 118
>2p6v_A Transcription initiation factor TFIID subunit 4; alpha helix; HET: MLY; 2.00A {Homo sapiens} SCOP: a.277.1.1
Probab=24.10 E-value=84 Score=27.02 Aligned_cols=33 Identities=15% Similarity=0.300 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhcc-CCChhHHHHHHHHHHHHHHH
Q 011515 80 KNVLHEMVKIARK-KPDTHVKEKILILIDTWQEA 112 (484)
Q Consensus 80 k~FLneLvkLv~~-k~d~~VkeKiLeLIq~Wa~a 112 (484)
++||..|+++.++ +..++|-+++.+||+..-++
T Consensus 23 k~FL~tLi~las~~~~spev~~~Vr~LVq~Ll~~ 56 (114)
T 2p6v_A 23 XNFLSTLIXLASSGXQSTETAANVXELVQNLLDG 56 (114)
T ss_dssp HHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhccccChHHHHHHHHHHHHHHHc
Confidence 7899999999986 45678888888888887654
No 119
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=23.87 E-value=3.2e+02 Score=31.15 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=54.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc-------hhhhhhcchHHHHHHHHHhc-cCCChhHHHHHHHHHHHHHH
Q 011515 40 VKGIKKRIGSRNSKVQLLALTLLETIIKNCGD-------IVHMHVAEKNVLHEMVKIAR-KKPDTHVKEKILILIDTWQE 111 (484)
Q Consensus 40 vraIrKRL~s~np~vqllAL~LLE~cVKNCG~-------~Fh~eVask~FLneLvkLv~-~k~d~~VkeKiLeLIq~Wa~ 111 (484)
+..|.+.+..++.++...|+..+..+++.+|. .|...+ ..++..+...+. ...+..||+.++..+..-..
T Consensus 521 lp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~ 598 (1230)
T 1u6g_C 521 VPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI--KDLFTCTIKRLKAADIDQEVKERAISCMGQIIC 598 (1230)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHH--HHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHH--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 44455567778888888899999999999886 333222 356666666554 34577999999999999888
Q ss_pred HhCC
Q 011515 112 AFGG 115 (484)
Q Consensus 112 aF~~ 115 (484)
.++.
T Consensus 599 ~~g~ 602 (1230)
T 1u6g_C 599 NLGD 602 (1230)
T ss_dssp HTGG
T ss_pred HhCc
Confidence 8764
No 120
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.50 E-value=3.2e+02 Score=25.73 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---CCHHHHHHHhhhhHHHHHHHH
Q 011515 219 IVDLVDQCRTYKQRVVHLVNST---ADESLLCQGLQLNDDLQRLLA 261 (484)
Q Consensus 219 i~EL~~~Cr~~q~rV~rLI~~~---~DEelL~eLL~aNDeL~~vL~ 261 (484)
+..+......+|+|..+=+... .-+.++.+||.+-|+|-+||.
T Consensus 82 ~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~ 127 (213)
T 4ani_A 82 YLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALK 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4456777788888888866654 789999999999999999985
No 121
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=22.15 E-value=83 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 011515 217 EVIVDLVDQCRTYKQRVVHLVNS 239 (484)
Q Consensus 217 Eli~EL~~~Cr~~q~rV~rLI~~ 239 (484)
+.-+.++..|.+.|+.|+.|+.+
T Consensus 12 ~rkerIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 12 DRRERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456799999999999999875
No 122
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.08 E-value=1.8e+02 Score=32.16 Aligned_cols=86 Identities=10% Similarity=0.175 Sum_probs=58.0
Q ss_pred HHHHHHhCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-CCChhHHHHH
Q 011515 24 EICDMLNHDPGQAKDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKI 102 (484)
Q Consensus 24 eICD~In~~~~~akeAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~-k~d~~VkeKi 102 (484)
.+|+.+...+..-..++..|.+.| + +.++..|-..+..+.+.|+..+...+ ..+++.|.+++.+ ..+..++..+
T Consensus 532 ~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~ 606 (971)
T 2x1g_F 532 SYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRL 606 (971)
T ss_dssp HTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHHHHHcCCCCChHHHHHH
Confidence 344444445555667777777777 2 67888888999999999987766443 4677777777764 3466777777
Q ss_pred HHHHHHHHHHhC
Q 011515 103 LILIDTWQEAFG 114 (484)
Q Consensus 103 LeLIq~Wa~aF~ 114 (484)
++-|-.-....+
T Consensus 607 ~~ai~~i~~~~~ 618 (971)
T 2x1g_F 607 MFSIGKLMSLLR 618 (971)
T ss_dssp HHHHHHHHHTSC
T ss_pred HHHHHHHHHhCC
Confidence 777777766553
No 123
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=21.96 E-value=1.9e+02 Score=31.09 Aligned_cols=72 Identities=14% Similarity=0.107 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Q 011515 37 KDVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARKKPDTHVKEKILILIDTWQ 110 (484)
Q Consensus 37 keAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~k~d~~VkeKiLeLIq~Wa 110 (484)
..++..|.+.|.+.++.+|..|...|-.+..... .....|....-+..|+++++. .+..|++.+...|..++
T Consensus 47 ~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~-~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 47 QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND-KVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCh-HHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHH
Confidence 4578888899999999999999887766665332 345667777888899999876 46788888888887765
No 124
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=21.91 E-value=1.2e+02 Score=26.41 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCCH---HHHHHHHHHHhCC----CCHHHHHH-----HHHHHHHHHhcccchhhh
Q 011515 22 NIEICDMLNHDPGQA---KDVVKGIKKRIGS----RNSKVQLL-----ALTLLETIIKNCGDIVHM 75 (484)
Q Consensus 22 ileICD~In~~~~~a---keAvraIrKRL~s----~np~vqll-----AL~LLE~cVKNCG~~Fh~ 75 (484)
..++.+.+++.+... .++++.+.++|+. +....|+. ++..|..+|..|..||..
T Consensus 56 ~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~~~~Ltk~E~LqivNl~P~t~vel~~iIEe~e~Rfse 121 (136)
T 3ayh_A 56 QFEILKYLSSQGNCEGLTKERFLDCIAIFNEFELTKAEILVILNNKPSSVPELYACIEGIEERFKE 121 (136)
T ss_dssp HHHHHHHHHTTTCCTTCCHHHHHHHHHTTTTTCCCHHHHHHHHHHCCCSHHHHHHHSTTHHHHHTT
T ss_pred HHHHHHHHHhCCCccccCHHHHHHHHHHHHhcCCCHHHHHHHhccCCCCHHHHHHHHHhcccCCCH
Confidence 456888898886555 8999999999975 23444443 446689999999988874
No 125
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=20.66 E-value=89 Score=34.52 Aligned_cols=68 Identities=12% Similarity=0.145 Sum_probs=44.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccchhhhhhcchHHHHHHHHHhcc-CCChhHHHHHHHHHHHH
Q 011515 38 DVVKGIKKRIGSRNSKVQLLALTLLETIIKNCGDIVHMHVAEKNVLHEMVKIARK-KPDTHVKEKILILIDTW 109 (484)
Q Consensus 38 eAvraIrKRL~s~np~vqllAL~LLE~cVKNCG~~Fh~eVask~FLneLvkLv~~-k~d~~VkeKiLeLIq~W 109 (484)
.++..|-..|++ +.|+..|...|..+++.|+..|.-.+ ..+++.|..++.+ ..+..++..+++.|-.-
T Consensus 529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 529 SVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp TTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 344555556644 78999999999999999988766443 4567777666654 23445555554444443
No 126
>2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens}
Probab=20.47 E-value=2.9e+02 Score=27.34 Aligned_cols=103 Identities=8% Similarity=0.068 Sum_probs=62.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHHH--hcccchhhhh-----hcchHHHH
Q 011515 20 AMNIEICDMLNHDPGQAKDVVKGIKKRIG-----SR---NSKVQLLALTLLETII--KNCGDIVHMH-----VAEKNVLH 84 (484)
Q Consensus 20 ~~ileICD~In~~~~~akeAvraIrKRL~-----s~---np~vqllAL~LLE~cV--KNCG~~Fh~e-----Vask~FLn 84 (484)
....++|..+|-+.....+|.+..++=-. +. .....+.|= |--+|. .+.+-.+-+. +.=.+|++
T Consensus 4 ~rF~~lC~~Lnld~~~~~~Aw~~~~~~~~~~~~~~~~~~~~~~~w~ac-LY~a~~~~~~n~vsLt~LLr~~~lsi~~Ff~ 82 (304)
T 2qdj_A 4 PDFTALCQKLKIPDHVRERAWLTWEKVSSVDGVLGGYIQKKKELWGIC-IFIAAVDLDEMSFTFTELQKNIEISVHKFFN 82 (304)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHC----------CHHHHHHHH-HHHHHHHHTCCCSCHHHHHHHHTCCHHHHHH
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHhccccccCCCccchHHHHHHh-HHHHhhccCCCcCcHHHHHHHcCCCHHHHHH
Confidence 45678999999999888999998877222 11 233333333 333332 2222222221 22367888
Q ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 011515 85 EMVKIARKKPDTHVKEKILILIDTWQEAFGGPRARYPQYYAAYQEL 130 (484)
Q Consensus 85 eLvkLv~~k~d~~VkeKiLeLIq~Wa~aF~~~~~~~~~i~~~Y~~L 130 (484)
+|.+ +. .+.+++.+|-+|-......+. -|.+|..+|+.|
T Consensus 83 k~~~-~d--~~~~~~~~i~~Le~~f~v~~~----l~kky~~if~~i 121 (304)
T 2qdj_A 83 LLKE-ID--TSTKVDNAMSRLLKKYDVLFA----LFSKLERTCELI 121 (304)
T ss_dssp HHTT-SC--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHH-cC--CCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 8888 33 678899998888777776653 356666667665
Done!