Query 011516
Match_columns 484
No_of_seqs 240 out of 837
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 09:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.7 1.9E-15 6.5E-20 155.7 19.2 185 244-469 245-439 (451)
2 3o7q_A L-fucose-proton symport 99.5 1.1E-13 3.8E-18 142.1 16.5 156 243-407 250-409 (438)
3 4aps_A DI-OR tripeptide H+ sym 99.2 2.5E-10 8.5E-15 119.3 15.4 174 251-465 13-198 (491)
4 4aps_A DI-OR tripeptide H+ sym 99.1 8E-10 2.8E-14 115.4 17.7 183 251-470 283-478 (491)
5 2gfp_A EMRD, multidrug resista 99.1 5.8E-11 2E-15 119.7 8.5 155 244-407 192-354 (375)
6 1pw4_A Glycerol-3-phosphate tr 99.1 2E-10 6.8E-15 118.0 11.2 176 248-464 25-207 (451)
7 2gfp_A EMRD, multidrug resista 99.0 4.4E-10 1.5E-14 113.2 9.0 167 254-461 3-172 (375)
8 2cfq_A Lactose permease; trans 99.0 1.5E-09 5.1E-14 112.0 13.1 179 244-463 213-399 (417)
9 3o7q_A L-fucose-proton symport 99.0 2.8E-09 9.5E-14 109.1 13.8 145 253-404 28-178 (438)
10 2xut_A Proton/peptide symporte 98.9 2.9E-09 1E-13 112.2 11.3 172 250-462 11-197 (524)
11 4gc0_A D-xylose-proton symport 98.7 1E-06 3.4E-11 91.6 20.3 188 248-470 273-469 (491)
12 2xut_A Proton/peptide symporte 98.6 3.3E-07 1.1E-11 96.4 13.9 122 323-468 376-507 (524)
13 4gc0_A D-xylose-proton symport 98.4 1.3E-06 4.4E-11 90.8 13.2 110 288-404 59-187 (491)
14 2cfq_A Lactose permease; trans 98.3 7.8E-08 2.7E-12 99.0 0.5 151 247-404 3-163 (417)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.66 E-value=1.9e-15 Score=155.68 Aligned_cols=185 Identities=18% Similarity=0.153 Sum_probs=145.7
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhh--hhccCCc
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEII--VRDYAYP 318 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~--~~~~~~~ 318 (484)
.++.++++.+|.+.+..++......++....+.+.++ +|.++. ....++.++++.+|+++.|+++||+ ++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--- 321 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--- 321 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---
Confidence 5778899999999999888877777777778888877 688764 4588889999999999999999998 5532
Q ss_pred hhHHHHHHHHHHH-HHHHHHhcc---chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhH-HHHH
Q 011516 319 RPVAMAVAQFVMA-IGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA-GSLV 393 (484)
Q Consensus 319 r~~~l~~~~~l~~-~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~v-g~~l 393 (484)
. +.+...+.. ++.+++... +...+.+..++.|++++..+.....++.|.++.++.|+.+|+......+ |..
T Consensus 322 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~- 397 (451)
T 1pw4_A 322 --A-TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV- 397 (451)
T ss_dssp --H-HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-
T ss_pred --h-HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-
Confidence 2 222223323 455544432 3445667778889999988888889999999999999999999999888 887
Q ss_pred HHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 394 FSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 394 ~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
+++.+.|.++|..+ |+..|.+.+++++++.++.+++..+.++
T Consensus 398 ~~~~~~g~l~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 398 AASAIVGYTVDFFG----------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HHHHHHHHHHHSSC----------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 58999999999765 8999999999999988887776544443
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.53 E-value=1.1e-13 Score=142.09 Aligned_cols=156 Identities=9% Similarity=0.105 Sum_probs=119.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhH-HHhc-CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i-~~sl-g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
+.++.+|++.+|...+..++..+....+...++.+ .++. |.++. ....++..++..+|+++.|+++||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--- 326 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--- 326 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---
Confidence 34678899999999999998888877787888888 7776 87764 45788889999999999999999998753
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.+.+...+..++.+++...+.....+..++.|++++..++.....+.|.++.+ .++..++.... .+|.. ++|.+
T Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~-~~~~~ 400 (438)
T 3o7q_A 327 ---VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGGG-IVTPV 400 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-THHHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-HHHHH-HHHHH
Confidence 23334444455554444443334455668899999999999999989999854 77777777744 47776 58999
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
.|+++|..|
T Consensus 401 ~g~l~~~~g 409 (438)
T 3o7q_A 401 MGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999886
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=2.5e-10 Score=119.31 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHh------cCCChh--HHHHHHHHHhhhhcccccccchhh-hhhccCCchhH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNT--HIFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 321 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~s------lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~ 321 (484)
+.+|.+++..++.......+...++.+.++ +|.+.. ....++..++..++.+.+|+++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877777666555565666666654 788764 458899999999999999999999 88854
Q ss_pred HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccc--hhhhhhHHhhhhhHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~--~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.+.+..++.+++.++++. .+...+++..++.|++.|..++..+++++|+|..++ .++.+++...+..+|.. ++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 234455566666665554 456678889999999999999999999999999888 88899999899999987 58999
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
.|.+.|..+ |+..|.+.+..++++.++.++...
T Consensus 166 ~~~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG----------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC----------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh----------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998765 999999998888777776655433
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.14 E-value=8e-10 Score=115.40 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHh-cCCC--hhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~--~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
..+|.+++..++...........++.+.++ .+.+ +.....++.++...++..+.|+++||++||+... .+.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~-~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS-PTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Confidence 345555544444444444444555666655 3443 2345667778888889999999999999875332 23334445
Q ss_pred HHHHHHHHHHhc----------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 328 FVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 328 ~l~~~~~lll~~----------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.+++.+++.. .+...+.+..++.|++.+...+.....+.|.++.++.|+..|+..+...+|..+ ++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~ 440 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQ 440 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 555555444322 134456778889999999999999999999999999999999999999898874 788
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 470 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~ 470 (484)
+.|.+.|.. |...|.+.+++++++.++.+++..+.|+.
T Consensus 441 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNAKS-----------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGGSS-----------------------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhccc-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766431 56788888888888877776655554443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.14 E-value=5.8e-11 Score=119.65 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=115.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.+|++.+|.+.+..++.......+....+.+.++ +|.++. ....++.+++..+|+++.|+++||.++ +.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~ 266 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LM 266 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3568899999999998888777766676777777766 676653 357788889999999999999998865 11
Q ss_pred HHHHHHHHHHHHHHH--HHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 321 ~~l~~~~~l~~~~~l--ll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
. .... .....+.+ .+.. .+...+++..++.|+++|..++.....+.|.++ ++.|+.+|+......+|.. ++
T Consensus 267 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~ 342 (375)
T 2gfp_A 267 W-QSVI-CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VL 342 (375)
T ss_dssp H-HHHH-HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CC
T ss_pred H-HHHH-HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HH
Confidence 1 1111 11112211 1111 133445677889999999999999999999998 9999999999999999988 47
Q ss_pred HHHHHHHHhhhh
Q 011516 396 GLIASYIYDHEA 407 (484)
Q Consensus 396 ~~l~G~iyD~~~ 407 (484)
+.+.|.++|..+
T Consensus 343 ~~~~g~l~~~~~ 354 (375)
T 2gfp_A 343 ASLSAMLPQTGQ 354 (375)
T ss_dssp STTCTHHHHHHH
T ss_pred HHHHHHHhcCCc
Confidence 899999998665
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.12 E-value=2e-10 Score=118.01 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=136.2
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
.+.+.++.+++..++......++...++.+.+++ .++. ....++..+...++.+.+|+++||++||+ .+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHH
Confidence 3455667777766666555455555667777777 6643 46889999999999999999999999864 3445
Q ss_pred HHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 326 AQFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 326 ~~~l~~~~~lll~~-----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
...+.+++.++++. .+...+++..++.|++.|..++...++++|++..|+.++..|+...+..+|.. +++.++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~ 176 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 55555666555433 45567888999999999999999999999999999999999999999999987 5889999
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
.+.+..+ .||.+|.+.+.++++..++..+..
T Consensus 177 ~l~~~~g---------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 177 LGMAWFN---------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHTC---------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc---------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9886553 278889999888877766655543
No 7
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.02 E-value=4.4e-10 Score=113.18 Aligned_cols=167 Identities=11% Similarity=0.133 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~ 331 (484)
+++++..++......++...++.+.+++|.++.+ ...++..+...++.+.+|+++||++||+.+ .+...+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHH
Confidence 3444555554444445556677788888887653 588999999999999999999999987643 23333444
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhc
Q 011516 332 IGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410 (484)
Q Consensus 332 ~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~ 410 (484)
++.+++. .++...+++..++.|++.|...+....++.|.+..|+.++.+++......+|.. ++|.++|.+.|..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~--- 152 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN--- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc---
Confidence 4444433 345566788899999999999999999999999999999999999999999987 58999999988765
Q ss_pred cCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 411 HQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
||..|.+.+..+++..++..
T Consensus 153 -------------------------------~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 153 -------------------------------WRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHCCCC
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 89999988888776655333
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.02 E-value=1.5e-09 Score=111.98 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=123.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCC---h--hHHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYD---N--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~---~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
.++.++++++|.+++..++....-..+...++.+.++. +.. . .....++..+++.+|++..|+++||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--
Confidence 45678999999887664443322222223344454442 211 1 123566777888999999999999998853
Q ss_pred chhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHH-hhhhhHHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSLVFS 395 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~-~~a~~vg~~l~~ 395 (484)
.+.+...+++++.+++.. .+...+.+..++.+++++.........++|.++.+..|+.+|+. ..+..+|.. ++
T Consensus 291 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~g 365 (417)
T 2cfq_A 291 ----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FM 365 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HH
T ss_pred ----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 123344444555544443 34445556666778887776666778999999999999999995 777778887 48
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|.+.|.++|..+ |+..|.+++++++++.++.+.+
T Consensus 366 p~l~G~l~~~~g----------------------------------~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 366 SVLAGNMYESIG----------------------------------FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp THHHHTHHHHSH----------------------------------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHhcC----------------------------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999765 8889999999988888776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.99 E-value=2.8e-09 Score=109.13 Aligned_cols=145 Identities=15% Similarity=0.109 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
++.++..+++.......+..-++.+.+++|.++.+ ...++..++..++.+.+|+++||++||+ .+.+...+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHH
Confidence 33444444333222223333456677888988654 5889999999999999999999999864 234455555
Q ss_pred HHHHHHH---h-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 331 AIGHIFL---G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 331 ~~~~lll---~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
+++.++. . ..+...+++..++.|++.|..++...++++|++..|+.++..|+...+..+|.. +++.+++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~ 178 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 5665554 3 345667888899999999999999999999999999999999999999999998 58899999883
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.93 E-value=2.9e-09 Score=112.19 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHH-HhcC------CChh--HHHHHHHHHhhhhcccccccchhhh-hhccCCch
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLG------YDNT--HIFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 319 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg------~~~~--~~~VSl~si~n~~GRl~~G~lsD~~-~~~~~~~r 319 (484)
++.+|++++..++......++...++.+. +++| .++. ....+++.+...++.+.+|+++||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 45678888877777666555666666655 4577 6654 4588999999999999999999999 8854
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhh---hhhHHhhhhhHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNFLTLANPAGSLVF 394 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~---~yG~~~~a~~vg~~l~ 394 (484)
.+.+..++.+++.+++.. . +...+++..++.|++.|...+..+++++|.|..++.++ .+|+...+..+|.. +
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~ 163 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-F 163 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-H
Confidence 234445555555555443 4 56678888999999999999999999999999888854 56668888888887 5
Q ss_pred HHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 395 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 395 ~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
+|.+.|.+.|..+ |+..|.+.+.+++++.++.++
T Consensus 164 g~~~~~~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNFG----------------------------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTSC----------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccc----------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999987654 899999998887776665543
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.68 E-value=1e-06 Score=91.64 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHHHHhhccccccc-cchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i-~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
.+.+..++......+....+...+ ...+.+.+..+.+... ....+.++.+.++.++++++.||++||+. +.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~------~~ 346 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL------QI 346 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH------HH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch------hc
Confidence 334444444444444444444333 3344555666766532 35567788899999999999999998642 12
Q ss_pred HHHHHHHHHHHHHh----ccchh-HHHHHHHHHHHHhccccc-chhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFLG----MGWPG-AMYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 325 ~~~~l~~~~~lll~----~~~~~-~l~~~~~l~G~~~G~~~~-l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.....++++.+.+. ...+. ...+...+...+++..++ +...+++|+|..+..++..|+.....-+++++ .+.+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~ 425 (491)
T 4gc0_A 347 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWT 425 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTH
T ss_pred cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 22222333322221 12222 222333333444444443 44578999999999999999998888888875 5677
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 470 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~ 470 (484)
+..+.+....... -.+..+|.+.+++|+++.+....+...||.+
T Consensus 426 ~p~l~~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 426 FPMMDKNSWLVAH----------------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHCHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHhh----------------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 7777665432110 0145678999999999998887777667654
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.60 E-value=3.3e-07 Score=96.44 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~----------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
+.+...+.+++.+++.. .+...+.+..++.|+++|...+.....+.|.++.++.|+..|+..+...+|..
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555555433 13345667888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011516 393 VFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 468 (484)
Q Consensus 393 l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r 468 (484)
+++.+.|.++|..+.... ++ .=.|. .+..|.+.+++++++.++.+++..++|
T Consensus 456 -~g~~~~g~~~~~~~~~~~------------------~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 456 -WVLLANVSVKSPTVTEQI------------------VQ---TGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp -HHHHHHHHTTSCHHHHHH------------------HH---HHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred -HHHHHHHHhccccccccc------------------cc---ccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999986431100 00 00000 133488888888888777666554444
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.44 E-value=1.3e-06 Score=90.81 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-------------------ccchhHHHHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-------------------MGWPGAMYVG 348 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-------------------~~~~~~l~~~ 348 (484)
..+|.+.++..+|-+++|+++||+|||+ .+.+..+++.++.++.+ ..+...++++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 4778888999999999999999999974 23445555555554433 3445678899
Q ss_pred HHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 349 ~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
-++.|++.|+..++.|..++|+...++.+...++...+..+|..+ +..+...+.+
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~ 187 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhcc
Confidence 999999999999999999999999999999999999998888764 5444444433
No 14
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.32 E-value=7.8e-08 Score=99.03 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=91.5
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
.+|+++||.+...+++......++...++.+.++ +|.++. ...+++..+...++++.+|+++||++||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 5899999999888776655544555666666654 687754 4689999999999999999999999996522
Q ss_pred HHHHHHHHH---HHHHHhccc--hhHHHHHHHHHHHHhcccccchhHHHHhhhC--ccchhhhhhHHhhhhhHHHHHHHH
Q 011516 324 AVAQFVMAI---GHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFG--LKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 324 ~~~~~l~~~---~~lll~~~~--~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG--~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.+...+..+ ..+...... ...++...++.|+..|..++.....+.++.. .|+.+..+|.......+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 111111111 111101100 0011222233333334333333333333332 25667788888777778876 578
Q ss_pred HHHHHHHh
Q 011516 397 LIASYIYD 404 (484)
Q Consensus 397 ~l~G~iyD 404 (484)
.+.|++.|
T Consensus 156 ~l~~~l~~ 163 (417)
T 2cfq_A 156 SIVGIMFT 163 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
Done!