BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011517
(484 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 65/152 (42%), Gaps = 15/152 (9%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169
KR I NP GK+ K L D LE A + + T + A + YD
Sbjct: 25 KRARIIYNPTSGKE-QFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAXHENYDV 83
Query: 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAI 229
++ GDG L EVVNG+ E+ + + LGV+P GT N ++L P A+
Sbjct: 84 LIAAGGDGTLNEVVNGIAEKPN-----RPKLGVIPXGTVNDFGRAL----HIPNDIXGAL 134
Query: 230 LAVIRGHKRLLDVATILQGKTRFHSVLMLAWG 261
+I GH +D+ GK + LA G
Sbjct: 135 DVIIEGHSTKVDI-----GKXNNRYFINLAAG 161
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 377 PDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKA 424
PDAK DGY LII++ L + + ++G H + P V Y K KA
Sbjct: 232 PDAKLDDGYFTLIIVEKSNLAELGHIXTLASRGEHTKHPKVIYEKAKA 279
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 13 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 67
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKAS 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G P +
Sbjct: 68 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIA 118
Query: 227 NAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFY 284
A + + H + +DVA G+ H + GLV+++ +I++E+ +G +I +Y
Sbjct: 119 EAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG--KIGYY 172
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 25/180 (13%)
Query: 110 KRLYIFVNPFGGKKIASKIFLDDVKPL---LEDANIQFTVQETTQQLHAKEIVKVLDLSK 166
+++ + VNP G+ V PL D +I T ++ + +E SK
Sbjct: 9 EKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-----SK 63
Query: 167 YDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKAS 226
D I+ GDG + E NGL E I+ L ++P GT N ++L G P +
Sbjct: 64 VDLIIVFGGDGTVFECTNGLAPLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIA 114
Query: 227 NAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI--DIESEKYRWMGSARIDFY 284
A + + H + +DVA G+ H + GLV+++ +I++E+ +G +I +Y
Sbjct: 115 EAAKLITKEHVKPVDVAK-ANGQ---HFLNFWGIGLVSEVSNNIDAEEKAKLG--KIGYY 168
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 8/166 (4%)
Query: 123 KIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182
K A L + LL D IQ V+ T ++ A+ V + ++ GDG + EV
Sbjct: 14 KSADNQPLREAITLLRDEGIQIHVRVTWEKGDAQRYVDEARRLGVETVIAGGGDGTINEV 73
Query: 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDV 242
L++ D + LG++P GT N S G P A+ I G+ +D
Sbjct: 74 STALIQ---IRDGVAPALGLLPLGTANDFATS----AGIPEALDKALKLAIAGNAXEIDX 126
Query: 243 ATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQR 288
A + KT F + +G + + +G + L R
Sbjct: 127 AXV-NDKTCFINXATGGFGTRITTETPEKLKAALGGVSYLIHGLXR 171
>pdb|2HII|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|C Chain C, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|N Chain N, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Z Chain Z, Heterotrimeric Pcna Sliding Clamp
Length = 252
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 136 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 195
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 196 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNXEGGGKVT 237
>pdb|2IJX|A Chain A, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|B Chain B, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|C Chain C, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2IJX|D Chain D, Crystal Structure Of Pcna3 Monomer From Sulfolobus
Solfataricus.
pdb|2NTI|F Chain F, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|C Chain C, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|I Chain I, Crystal Structure Of Pcna123 Heterotrimer
Length = 244
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 136 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 195
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 196 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVT 237
>pdb|2IX2|C Chain C, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 259
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 33 TDGHQRSLTLEKQVL-GFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRKDFVFEPLSEDS 91
+DG + +++ V VVEG + RI +G E+ + +D F S++S
Sbjct: 151 SDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNS 210
Query: 92 KR-------LWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIA 125
L KL D++ SFG K L +F N GG K+
Sbjct: 211 YSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVT 252
>pdb|4FBH|A Chain A, Structure Of Rip From Barley Seeds
Length = 281
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 104 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 150
>pdb|4FB9|A Chain A, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|B Chain B, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|C Chain C, Structure Of Mutant Rip From Barley Seeds
pdb|4FB9|D Chain D, Structure Of Mutant Rip From Barley Seeds
Length = 282
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 105 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 151
>pdb|4FBA|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBA|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine
pdb|4FBB|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBB|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Adenine (amp-incubated)
pdb|4FBC|A Chain A, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|B Chain B, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|C Chain C, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
pdb|4FBC|D Chain D, Structure Of Mutant Rip From Barley Seeds In Complex With
Amp
Length = 282
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 201 GVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTR 251
G++P T G + DL+G+ K +N L G ++L D T L G+T+
Sbjct: 105 GLIPGATYVGFGGTYRDLLGDTDKLTNVAL----GRQQLADAVTALHGRTK 151
>pdb|1RS8|A Chain A, Bovine Endothelial Nos Heme Domain With
D-Lysine-D-Nitroarginine Amide Bound
pdb|1RS8|B Chain B, Bovine Endothelial Nos Heme Domain With
D-Lysine-D-Nitroarginine Amide Bound
pdb|1RS9|A Chain A, Bovine Endothelial Nos Heme Domain With D-Phenylalanine-D-
Nitroarginine Amide Bound
pdb|1RS9|B Chain B, Bovine Endothelial Nos Heme Domain With D-Phenylalanine-D-
Nitroarginine Amide Bound
pdb|2G6O|A Chain A, Structure Of Bovine Enos Heme Domain (Bh4-Free) Complexed
With Co
pdb|2G6O|B Chain B, Structure Of Bovine Enos Heme Domain (Bh4-Free) Complexed
With Co
pdb|2HX2|A Chain A, Bovine Enos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-
Aminoethyl)-Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|2HX2|B Chain B, Bovine Enos Heme Domain Complexed With
(4s)-N-{4-Amino-5-[(2-
Aminoethyl)-Hydroxyamino]-Pentyl}-N'-Nitroguanidine
pdb|3DQS|A Chain A, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-
3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,2-Diamine
pdb|3DQS|B Chain B, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{cis-4'-[(6"-Amino-4"-Methylpyridin-2"-
Yl)methyl]pyrrolidin-
3'-Yl}-N2-(4'-Chlorobenzyl)ethane-1,2-Diamine
pdb|3DQT|A Chain A, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{trans-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)ethane-1,
2-Diamine
pdb|3DQT|B Chain B, Structure Of Endothelial Nos Heme Domain In Complex With A
Inhibitor
(+-)-N1-{trans-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Chlorobenzyl)ethane-1,
2-Diamine
pdb|3PNH|A Chain A, Structure Of Bovine Endothelial Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl) Ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
pdb|3PNH|B Chain B, Structure Of Bovine Endothelial Nitric Oxide Synthase Heme
Domain In Complex With
6-(((3r,4r)-4-(2-((2-Fluoro-2-(3-Fluorophenyl) Ethyl)
Amino)ethoxy)pyrrolidin-3-Yl)methyl)-4-Methylpyridin-2-
Amine
Length = 416
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 218 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 277
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 278 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 306
>pdb|1P6L|A Chain A, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1P6L|B Chain B, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-2,4- L-Diaminobutyric Amide
Bound
pdb|1P6M|A Chain A, Bovine Endothelial Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6M|B Chain B, Bovine Endothelial Nos Heme Domain With (4s)-N-(4-Amino-5-
[aminoethyl]aminopentyl)-N'-Nitroguanidine Bound
pdb|1P6N|A Chain A, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
pdb|1P6N|B Chain B, Bovine Endothelial Nos Heme Domain With
L-N(Omega)-Nitroarginine-(4r)- Amino-L-Proline Amide
Bound
Length = 417
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 218 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 277
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 278 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 306
>pdb|3E7S|A Chain A, Structure Of Bovine Enos Oxygenase Domain With Inhibitor
Ar- C95791
Length = 431
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 228 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 287
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 288 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 316
>pdb|3PF2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35kda C-Terminal Fragment
pdb|3PG2|A Chain A, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
pdb|3PG2|B Chain B, The Crystal Structure Of The Major Pilin Gbs80 Of
Streptococcus Agalactiae 35 Kda C-Terminal Fragment
Length = 319
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 24 LTGDGR-LRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEI 68
L DG ++WTD ++ T + + G V G I++++ DG EI
Sbjct: 205 LASDGTAVKWTDALIKANTNKNYIAGEAVTGQPIKLKSHTDGTFEI 250
>pdb|3N6B|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6B|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-
2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6C|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)
Ethyl)pyridin-2-Yl)ethyl)-6-Methylpyridin-2-Amine
pdb|3N6C|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)
Ethyl)pyridin-2-Yl)ethyl)-6-Methylpyridin-2-Amine
pdb|3N6D|A Chain A, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)
Bis(Ethane-2,1-Diyl))bis(4-Methylpyridin-2-Amine)
pdb|3N6D|B Chain B, Structure Of Endothelial Nitric Oxide Synthase H373s
Single Mutant Heme Domain Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)
Bis(Ethane-2,1-Diyl))bis(4-Methylpyridin-2-Amine)
Length = 444
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 246 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 305
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 306 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 334
>pdb|3E7S|B Chain B, Structure Of Bovine Enos Oxygenase Domain With Inhibitor
Ar- C95791
Length = 431
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 228 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 287
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 288 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 316
>pdb|1I83|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1,N14-Bis((S-Methyl)isothioureido)tetradecane (H4b
Free)
pdb|1I83|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1,N14-Bis((S-Methyl)isothioureido)tetradecane (H4b
Free)
Length = 444
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 246 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 305
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 306 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 334
>pdb|1NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase
pdb|1NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase
pdb|2NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase Substrate Complex
pdb|2NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase Substrate Complex
pdb|3NSE|A Chain A, Bovine Enos, H4b-Free, Seitu Complex
pdb|3NSE|B Chain B, Bovine Enos, H4b-Free, Seitu Complex
pdb|4NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase, H4b-Free, L-Arg
Complex
pdb|4NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase, H4b-Free, L-Arg
Complex
pdb|1D1W|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 2- Aminothiazoline (h4b Bound)
pdb|1D1W|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 2- Aminothiazoline (h4b Bound)
pdb|1ED4|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Ipitu (H4b Free)
pdb|1ED4|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Ipitu (H4b Free)
pdb|9NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase,
Ethyl-Isoselenourea Complex
pdb|9NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase,
Ethyl-Isoselenourea Complex
pdb|1DMI|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 6s-H4b
pdb|1DMI|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 6s-H4b
pdb|1DMJ|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 5, 6-cyclic-tetrahydropteridine
pdb|1DMJ|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 5, 6-cyclic-tetrahydropteridine
pdb|1DMK|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 4- Amino-6-Phenyl-Tetrahydropteridine
pdb|1DMK|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 4- Amino-6-Phenyl-Tetrahydropteridine
pdb|1DM6|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With N- (4-Chlorophenyl)-N'-Hydroxyguanidine
(H4b Free)
pdb|1DM6|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With N- (4-Chlorophenyl)-N'-Hydroxyguanidine
(H4b Free)
pdb|1DM7|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Homoarginine (H4b Free)
pdb|1DM7|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Homoarginine (H4b Free)
pdb|1DM8|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 2,4-Triazole-Carboxamidine (H4b Bound)
pdb|1DM8|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 2,4-Triazole-Carboxamidine (H4b Bound)
pdb|1ED5|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Nna(H4b Free)
pdb|1ED5|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With Nna(H4b Free)
pdb|1ED6|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Nio (H4b Free)
pdb|1ED6|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Nio (H4b Free)
pdb|1D1V|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With S- Ethyl-N-Phenyl-Isothiourea (H4b Bound)
pdb|1D1V|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With S- Ethyl-N-Phenyl-Isothiourea (H4b Bound)
pdb|1D1X|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 4-Pbitu (H4b Bound)
pdb|1D1X|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 4-Pbitu (H4b Bound)
pdb|1D1Y|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 3-Pbitu (H4b Free)
pdb|1D1Y|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1, 3-Pbitu (H4b Free)
pdb|1FOI|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1400w(H4b-Free)
pdb|1FOI|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 1400w(H4b-Free)
pdb|1FOL|A Chain A, Reduced Bovine Endothelial Nitric Oxide Synthase Heme
Domain Complexed With L-Arg(H4b-Free)
pdb|1FOL|B Chain B, Reduced Bovine Endothelial Nitric Oxide Synthase Heme
Domain Complexed With L-Arg(H4b-Free)
pdb|1FOO|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Arg And No(H4b-Free)
pdb|1FOO|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Arg And No(H4b-Free)
pdb|1FOP|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Arg And No(H4b-Bound)
pdb|1FOP|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With L- Arg And No(H4b-Bound)
pdb|1FOJ|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 7- Nitroindazole-2-carboxamidine (h4b
Present)
pdb|1FOJ|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 7- Nitroindazole-2-carboxamidine (h4b
Present)
pdb|8NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase, Nna Complex
pdb|8NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase, Nna Complex
pdb|1D0O|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 3- Bromo-7-Nitroindazole (H4b Present)
pdb|1D0O|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 3- Bromo-7-Nitroindazole (H4b Present)
pdb|1D0C|A Chain A, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 3- Bromo-7-Nitroindazole (H4b Free)
pdb|1D0C|B Chain B, Bovine Endothelial Nitric Oxide Synthase Heme Domain
Complexed With 3- Bromo-7-Nitroindazole (H4b Free)
pdb|5NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase, H4b-free,
Hydroxy-arg Complex
pdb|5NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase, H4b-free,
Hydroxy-arg Complex
pdb|6NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase, H4b-Free,
Canavanine Complex
pdb|6NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase, H4b-Free,
Canavanine Complex
pdb|7NSE|A Chain A, Bovine Endothelial Nitric Oxide Synthase, H4b-Free, Adma
Complex
pdb|7NSE|B Chain B, Bovine Endothelial Nitric Oxide Synthase, H4b-Free, Adma
Complex
pdb|3JWW|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-[(3's,4's)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)met
Pyrrolidin-3'-Yl]-N2-
(3'-Fluorophenethyl)ethane-1,2-Diamin Tetrahydrochloride
pdb|3JWW|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-[(3's,4's)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)met
Pyrrolidin-3'-Yl]-N2-
(3'-Fluorophenethyl)ethane-1,2-Diamin Tetrahydrochloride
pdb|3JWX|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-[(3'r,4'r)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)met
Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2-Diamine Tetrahydrochloride
pdb|3JWX|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-[(3'r,4'r)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)met
Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2-Diamine Tetrahydrochloride
pdb|3JWY|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)ethane-
1,2- Tetrahydrochloride
pdb|3JWY|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With
N1-{(3'r,4's)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)ethane-
1,2- Tetrahydrochloride
pdb|3JWZ|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With N1-[(3' S,4'
R)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)m
Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2-Diamine Tetrahydrochloride
pdb|3JWZ|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
C With N1-[(3' S,4'
R)-4'-((6"-Amino-4"-Methylpyridin-2"-Yl)m
Pyrrolidin-3'-Yl]-N2-(3'-Fluorophenethyl)ethane-1,
2-Diamine Tetrahydrochloride
pdb|3NLD|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLD|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3's,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLE|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLE|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3'r,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLF|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLF|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3'r,4's)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLG|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLG|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6-{{(3's,4'r)-3'-[2"-(3'''-Fluorophenethylamino)
Ethoxy]pyrrolidin-4'-Yl}methyl}-4-Methylpyridin-2-Amine
pdb|3NLT|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-
N2-(3'-Fluorophenethyl)ethane-1,2-Diamine
Tetrahydrochloride
pdb|3NLT|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1-{(3's,4's)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-
N2-(3'-Fluorophenethyl)ethane-1,2-Diamine
Tetrahydrochloride
pdb|3NLU|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)ethane-
1,2-Diamine Tetrahydrochloride
pdb|3NLU|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
N1-{(3'r,4'r)-4'-[(6"-Amino-4"-Methylpyridin-2"-Yl)
Methyl]pyrrolidin-3'-Yl}-N2-(3'-Fluorophenethyl)ethane-
1,2-Diamine Tetrahydrochloride
pdb|3N5P|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
2-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5P|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(2-(6-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
2-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5Q|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5Q|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6,6'-(2,2'-(5-Amino-1,3-Phenylene)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5R|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-
6- Methylpyridin-2-Amine
pdb|3N5R|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(3-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)phenethyl)-
6- Methylpyridin-2-Amine
pdb|3N5S|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
3-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5S|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
4-(2-(5-(2-(6-Amino-4-Methylpyridin-2-Yl)ethyl)pyridin-
3-Yl) Ethyl)-6-Methylpyridin-2-Amine
pdb|3N5T|A Chain A, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
pdb|3N5T|B Chain B, Structure Of Endothelial Nitric Oxide Synthase Heme Domain
Complexed With
6,6'-(2,2'-(Pyridine-3,5-Diyl)bis(Ethane-2,
1-Diyl))bis(4- Methylpyridin-2-Amine)
Length = 444
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 235 GHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQ 294
G+ R + +LQ + +L LV ++ +E W + + +YAL + +
Sbjct: 246 GNGRFDVLPLLLQAPDEAPELFVLPPELVLEVPLEHPTLEWFAALGLRWYALPAVSNMLL 305
Query: 295 YNGRVSFVPAPGFENHGEPSTYSEQNICNP 324
G + F AP F + +N+C+P
Sbjct: 306 EIGGLEFSAAP-FSGWYMSTEIGTRNLCDP 334
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,279,883
Number of Sequences: 62578
Number of extensions: 691986
Number of successful extensions: 1372
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1365
Number of HSP's gapped (non-prelim): 29
length of query: 484
length of database: 14,973,337
effective HSP length: 103
effective length of query: 381
effective length of database: 8,527,803
effective search space: 3249092943
effective search space used: 3249092943
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)