Query 011517
Match_columns 484
No_of_seqs 236 out of 1483
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:14:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02958 diacylglycerol kinase 100.0 5.7E-95 1.2E-99 767.0 53.7 479 1-484 3-481 (481)
2 KOG1116 Sphingosine kinase, in 100.0 1.3E-69 2.9E-74 560.0 31.8 359 103-483 173-566 (579)
3 PLN02204 diacylglycerol kinase 100.0 7.8E-66 1.7E-70 542.5 44.6 449 6-483 18-597 (601)
4 KOG1115 Ceramide kinase [Lipid 100.0 5.7E-63 1.2E-67 485.5 23.5 366 74-482 122-507 (516)
5 PRK11914 diacylglycerol kinase 100.0 1.2E-51 2.6E-56 416.0 33.1 292 109-468 8-303 (306)
6 PRK13337 putative lipid kinase 100.0 6.7E-50 1.5E-54 402.9 30.5 290 110-468 2-293 (304)
7 PRK13059 putative lipid kinase 100.0 1.6E-49 3.6E-54 398.3 32.7 288 110-468 2-292 (295)
8 PRK13055 putative lipid kinase 100.0 3.8E-49 8.2E-54 402.0 31.8 296 109-470 2-302 (334)
9 PRK13057 putative lipid kinase 100.0 1.6E-48 3.5E-53 389.8 31.4 282 113-468 1-284 (287)
10 PRK00861 putative lipid kinase 100.0 1.9E-48 4.1E-53 391.7 29.0 291 109-471 2-299 (300)
11 COG1597 LCB5 Sphingosine kinas 100.0 2.2E-47 4.8E-52 382.4 29.0 292 108-468 1-295 (301)
12 PRK13054 lipid kinase; Reviewe 100.0 7.8E-47 1.7E-51 379.9 30.8 290 109-469 3-294 (300)
13 TIGR03702 lip_kinase_YegS lipi 100.0 7.3E-47 1.6E-51 378.9 30.3 285 111-468 1-287 (293)
14 TIGR00147 lipid kinase, YegS/R 100.0 5.4E-46 1.2E-50 372.6 31.8 288 110-466 2-292 (293)
15 PRK12361 hypothetical protein; 100.0 1.4E-40 3E-45 360.1 31.3 293 107-469 240-542 (547)
16 PF00781 DAGK_cat: Diacylglyce 99.9 9E-26 1.9E-30 199.4 13.6 126 111-246 1-128 (130)
17 KOG4435 Predicted lipid kinase 99.9 2.1E-23 4.6E-28 206.0 12.7 187 106-301 57-252 (535)
18 KOG1169 Diacylglycerol kinase 99.9 9.5E-22 2E-26 207.4 17.1 301 109-468 271-620 (634)
19 smart00046 DAGKc Diacylglycero 99.8 3.3E-21 7.2E-26 168.8 8.9 105 113-230 1-107 (124)
20 KOG0782 Predicted diacylglycer 99.8 7.4E-19 1.6E-23 179.7 16.8 284 107-457 363-684 (1004)
21 smart00045 DAGKa Diacylglycero 99.4 7.8E-13 1.7E-17 121.0 7.4 134 255-448 3-160 (160)
22 PRK03708 ppnK inorganic polyph 99.0 3.3E-09 7.1E-14 105.4 11.5 111 111-238 2-115 (277)
23 PRK02645 ppnK inorganic polyph 98.8 2.9E-08 6.3E-13 100.1 11.1 116 108-238 2-118 (305)
24 PF00609 DAGK_acc: Diacylglyce 98.4 1.4E-06 3E-11 79.9 9.5 135 255-448 3-161 (161)
25 COG3199 Predicted inorganic po 98.3 2.3E-06 5E-11 85.4 10.1 73 150-235 84-157 (355)
26 PRK14075 pnk inorganic polypho 98.1 0.00023 5.1E-09 70.1 19.1 96 111-238 2-97 (256)
27 PRK01231 ppnK inorganic polyph 98.1 1.6E-05 3.5E-10 79.8 10.4 112 109-237 4-120 (295)
28 PRK03378 ppnK inorganic polyph 98.0 1.3E-05 2.8E-10 80.3 8.1 111 109-237 5-121 (292)
29 KOG1170 Diacylglycerol kinase 97.9 5.2E-06 1.1E-10 89.7 2.0 127 110-245 195-323 (1099)
30 PF01513 NAD_kinase: ATP-NAD k 97.7 3.8E-05 8.2E-10 76.9 5.0 113 111-239 1-136 (285)
31 PRK03372 ppnK inorganic polyph 97.7 0.00017 3.7E-09 72.7 9.4 115 107-238 3-131 (306)
32 PRK02155 ppnK NAD(+)/NADH kina 97.6 0.00032 6.9E-09 70.4 10.4 113 109-238 5-122 (291)
33 PRK14076 pnk inorganic polypho 97.4 0.0021 4.5E-08 70.6 13.9 131 88-237 271-406 (569)
34 PRK04539 ppnK inorganic polyph 97.3 0.0015 3.3E-08 65.6 10.8 112 109-237 5-126 (296)
35 PRK03501 ppnK inorganic polyph 97.3 0.0025 5.5E-08 62.9 12.1 96 110-237 3-99 (264)
36 PRK14077 pnk inorganic polypho 97.3 0.00088 1.9E-08 67.0 8.8 111 108-236 9-121 (287)
37 PRK02649 ppnK inorganic polyph 97.3 0.001 2.3E-08 67.0 9.3 111 110-237 2-126 (305)
38 PRK01911 ppnK inorganic polyph 97.2 0.0016 3.6E-08 65.2 9.0 110 111-237 2-122 (292)
39 PLN02935 Bifunctional NADH kin 97.1 0.0022 4.8E-08 68.0 9.4 116 105-237 190-320 (508)
40 PRK04885 ppnK inorganic polyph 97.1 0.003 6.5E-08 62.5 9.8 95 111-238 2-96 (265)
41 PLN02727 NAD kinase 96.8 0.0067 1.5E-07 68.3 10.4 113 105-237 674-801 (986)
42 PLN02929 NADH kinase 96.4 0.015 3.4E-07 58.3 9.2 96 129-240 35-142 (301)
43 PRK00561 ppnK inorganic polyph 96.3 0.053 1.1E-06 53.4 12.3 99 111-246 2-101 (259)
44 PRK01185 ppnK inorganic polyph 96.3 0.031 6.6E-07 55.5 10.7 105 111-237 2-107 (271)
45 KOG1170 Diacylglycerol kinase 96.3 0.011 2.5E-07 64.7 7.7 86 361-461 689-784 (1099)
46 PF11711 Tim54: Inner membrane 96.0 0.022 4.8E-07 58.9 8.1 68 90-157 44-117 (382)
47 PF13685 Fe-ADH_2: Iron-contai 95.5 0.07 1.5E-06 52.4 9.1 103 99-214 10-117 (250)
48 PRK04761 ppnK inorganic polyph 95.0 0.15 3.2E-06 50.0 9.4 61 164-236 23-83 (246)
49 KOG4180 Predicted kinase [Gene 95.0 0.023 5E-07 56.5 3.8 97 126-240 73-171 (395)
50 PRK02231 ppnK inorganic polyph 94.9 0.08 1.7E-06 52.6 7.3 92 131-236 3-100 (272)
51 cd08186 Fe-ADH8 Iron-containin 94.6 0.34 7.4E-06 50.6 11.7 100 110-213 27-145 (383)
52 cd08176 LPO Lactadehyde:propan 94.5 0.39 8.5E-06 50.0 11.8 97 110-211 29-143 (377)
53 cd08549 G1PDH_related Glycerol 94.1 0.42 9.1E-06 48.9 10.8 88 106-206 21-113 (332)
54 PRK10624 L-1,2-propanediol oxi 94.0 0.69 1.5E-05 48.3 12.3 97 110-211 31-147 (382)
55 cd08197 DOIS 2-deoxy-scyllo-in 93.9 0.77 1.7E-05 47.5 12.5 86 110-205 24-118 (355)
56 cd08195 DHQS Dehydroquinate sy 93.6 0.63 1.4E-05 47.9 11.2 89 107-205 22-119 (345)
57 cd08187 BDH Butanol dehydrogen 93.6 0.65 1.4E-05 48.5 11.3 96 110-209 29-142 (382)
58 cd08550 GlyDH-like Glycerol_de 93.5 0.5 1.1E-05 48.6 10.3 84 110-205 23-109 (349)
59 PRK00843 egsA NAD(P)-dependent 93.3 0.83 1.8E-05 47.1 11.4 87 109-208 34-122 (350)
60 cd08181 PPD-like 1,3-propanedi 93.2 1 2.2E-05 46.5 12.0 100 110-213 26-142 (357)
61 cd08190 HOT Hydroxyacid-oxoaci 93.2 1.1 2.3E-05 47.5 12.3 68 110-182 24-95 (414)
62 cd08194 Fe-ADH6 Iron-containin 92.8 1.4 3E-05 45.9 12.3 91 110-205 24-130 (375)
63 cd08173 Gro1PDH Sn-glycerol-1- 92.8 1.1 2.4E-05 46.0 11.4 86 110-208 26-113 (339)
64 cd08191 HHD 6-hydroxyhexanoate 92.8 1.7 3.6E-05 45.5 12.9 105 101-212 16-138 (386)
65 PRK00002 aroB 3-dehydroquinate 92.8 1.3 2.8E-05 45.8 11.9 87 109-205 31-126 (358)
66 PRK09423 gldA glycerol dehydro 92.7 0.81 1.8E-05 47.5 10.4 84 110-205 30-116 (366)
67 cd08188 Fe-ADH4 Iron-containin 92.6 1.6 3.5E-05 45.4 12.6 99 110-213 29-145 (377)
68 cd08199 EEVS 2-epi-5-epi-valio 92.5 0.95 2.1E-05 46.8 10.4 88 108-205 25-122 (354)
69 COG0061 nadF NAD kinase [Coenz 92.4 0.89 1.9E-05 45.4 9.8 111 111-238 2-114 (281)
70 PRK09860 putative alcohol dehy 92.3 1.7 3.8E-05 45.4 12.2 100 110-213 32-148 (383)
71 cd08170 GlyDH Glycerol dehydro 92.2 1.3 2.9E-05 45.5 11.2 84 110-205 23-109 (351)
72 cd08172 GlyDH-like1 Glycerol d 92.1 0.87 1.9E-05 46.9 9.7 85 110-206 24-109 (347)
73 cd08171 GlyDH-like2 Glycerol d 92.0 0.99 2.1E-05 46.4 9.9 84 110-205 23-110 (345)
74 PRK10586 putative oxidoreducta 91.8 2.1 4.7E-05 44.3 12.1 100 99-212 25-125 (362)
75 COG1454 EutG Alcohol dehydroge 91.5 3.2 6.9E-05 43.3 12.9 102 109-215 29-148 (377)
76 cd08183 Fe-ADH2 Iron-containin 91.4 2.1 4.5E-05 44.6 11.6 95 110-212 23-138 (374)
77 TIGR01357 aroB 3-dehydroquinat 91.3 1.8 3.8E-05 44.5 10.9 87 109-205 20-115 (344)
78 cd08178 AAD_C C-terminal alcoh 91.3 1.6 3.4E-05 45.9 10.7 72 109-185 21-96 (398)
79 cd08551 Fe-ADH iron-containing 91.0 2.2 4.8E-05 44.2 11.4 93 110-207 24-132 (370)
80 TIGR02638 lactal_redase lactal 91.0 2.3 5E-05 44.4 11.5 95 110-209 30-144 (379)
81 cd08192 Fe-ADH7 Iron-containin 90.8 2.8 6.1E-05 43.5 11.9 71 110-185 25-99 (370)
82 cd08174 G1PDH-like Glycerol-1- 90.7 2.3 5E-05 43.4 11.0 84 110-209 26-111 (331)
83 cd08193 HVD 5-hydroxyvalerate 90.5 3 6.5E-05 43.4 11.8 95 110-209 27-137 (376)
84 cd08175 G1PDH Glycerol-1-phosp 90.3 3.2 7E-05 42.6 11.8 86 110-208 24-115 (348)
85 cd07766 DHQ_Fe-ADH Dehydroquin 90.2 3.4 7.3E-05 42.1 11.7 90 109-209 23-116 (332)
86 cd08182 HEPD Hydroxyethylphosp 90.2 3.9 8.6E-05 42.3 12.4 89 110-206 24-132 (367)
87 PF10254 Pacs-1: PACS-1 cytoso 89.0 2.4 5.2E-05 44.4 9.5 108 97-216 3-127 (414)
88 cd08180 PDD 1,3-propanediol de 88.2 3.4 7.3E-05 42.2 10.0 93 109-209 22-123 (332)
89 KOG2178 Predicted sugar kinase 88.1 0.78 1.7E-05 47.3 5.1 58 165-236 167-225 (409)
90 cd08179 NADPH_BDH NADPH-depend 87.8 3.7 8.1E-05 42.7 10.2 99 110-212 24-143 (375)
91 PLN02834 3-dehydroquinate synt 87.7 3.1 6.8E-05 44.2 9.7 85 109-206 100-198 (433)
92 cd08185 Fe-ADH1 Iron-containin 85.4 14 0.00029 38.6 12.9 99 110-212 26-147 (380)
93 PF00465 Fe-ADH: Iron-containi 85.0 4 8.7E-05 42.2 8.7 95 111-209 23-133 (366)
94 cd08177 MAR Maleylacetate redu 84.3 5.5 0.00012 40.8 9.2 84 110-205 24-109 (337)
95 PRK15454 ethanol dehydrogenase 84.1 16 0.00035 38.4 12.7 100 110-213 50-166 (395)
96 cd08198 DHQS-like2 Dehydroquin 83.6 8.1 0.00018 40.2 10.1 92 108-206 29-134 (369)
97 PRK06203 aroB 3-dehydroquinate 83.4 4.9 0.00011 42.1 8.5 90 109-205 42-145 (389)
98 cd08184 Fe-ADH3 Iron-containin 83.0 17 0.00038 37.4 12.3 96 109-213 25-141 (347)
99 COG0371 GldA Glycerol dehydrog 82.6 9.3 0.0002 39.5 9.9 99 101-212 23-123 (360)
100 cd08169 DHQ-like Dehydroquinat 82.5 13 0.00029 38.2 11.2 92 109-210 23-124 (344)
101 cd08189 Fe-ADH5 Iron-containin 82.4 20 0.00043 37.2 12.6 95 110-209 27-140 (374)
102 PRK15138 aldehyde reductase; P 82.3 12 0.00025 39.2 10.9 98 110-213 30-148 (387)
103 PRK11780 isoprenoid biosynthes 81.9 6.2 0.00013 37.9 7.9 19 160-178 79-97 (217)
104 PRK14021 bifunctional shikimat 81.8 11 0.00024 41.3 10.8 85 110-205 210-303 (542)
105 PF00731 AIRC: AIR carboxylase 81.5 12 0.00025 33.9 8.9 61 129-189 15-79 (150)
106 cd06167 LabA_like LabA_like pr 80.1 29 0.00064 30.4 11.3 76 108-189 38-122 (149)
107 cd06295 PBP1_CelR Ligand bindi 79.5 20 0.00044 34.5 10.9 66 131-205 30-95 (275)
108 PRK05282 (alpha)-aspartyl dipe 77.3 15 0.00032 35.8 8.9 75 92-178 17-91 (233)
109 cd01536 PBP1_ABC_sugar_binding 76.7 18 0.0004 34.3 9.6 68 130-204 18-87 (267)
110 TIGR03405 Phn_Fe-ADH phosphona 76.5 10 0.00023 39.1 8.2 97 110-213 24-144 (355)
111 TIGR02483 PFK_mixed phosphofru 75.2 9.9 0.00021 38.9 7.5 53 153-213 81-133 (324)
112 cd00763 Bacterial_PFK Phosphof 75.2 11 0.00024 38.4 7.7 93 111-214 32-132 (317)
113 PF03575 Peptidase_S51: Peptid 74.0 5.2 0.00011 36.0 4.6 47 129-178 1-47 (154)
114 TIGR02482 PFKA_ATP 6-phosphofr 73.7 12 0.00025 37.9 7.5 53 154-213 79-131 (301)
115 TIGR00288 conserved hypothetic 73.4 51 0.0011 30.1 10.8 103 96-215 43-149 (160)
116 PRK03202 6-phosphofructokinase 72.1 12 0.00027 38.1 7.2 95 111-213 33-132 (320)
117 cd06310 PBP1_ABC_sugar_binding 71.6 26 0.00056 33.7 9.3 66 131-203 19-88 (273)
118 PTZ00286 6-phospho-1-fructokin 71.5 9.7 0.00021 40.8 6.6 114 110-232 120-239 (459)
119 cd06268 PBP1_ABC_transporter_L 71.1 85 0.0018 29.9 12.9 94 88-189 118-213 (298)
120 PF00763 THF_DHG_CYH: Tetrahyd 70.2 42 0.00091 28.8 9.2 79 90-172 7-93 (117)
121 cd00764 Eukaryotic_PFK Phospho 70.1 15 0.00032 41.9 7.9 61 153-214 465-525 (762)
122 cd01391 Periplasmic_Binding_Pr 70.1 30 0.00064 32.1 9.1 59 129-187 18-79 (269)
123 PRK14071 6-phosphofructokinase 68.7 15 0.00032 38.2 7.1 54 154-214 95-148 (360)
124 PLN02948 phosphoribosylaminoim 68.7 98 0.0021 34.3 13.9 120 75-208 371-499 (577)
125 cd03147 GATase1_Ydr533c_like T 68.3 21 0.00045 34.6 7.6 40 161-207 89-137 (231)
126 PRK06756 flavodoxin; Provision 68.0 25 0.00053 31.1 7.6 68 110-186 2-72 (148)
127 PF04392 ABC_sub_bind: ABC tra 67.8 31 0.00067 34.3 9.1 91 90-188 115-205 (294)
128 PLN02564 6-phosphofructokinase 67.1 15 0.00032 39.6 6.8 99 110-213 120-221 (484)
129 PRK13805 bifunctional acetalde 67.0 38 0.00082 39.4 10.7 72 109-185 480-557 (862)
130 cd07025 Peptidase_S66 LD-Carbo 67.0 17 0.00036 36.3 6.9 63 115-179 3-76 (282)
131 PRK06830 diphosphate--fructose 66.9 19 0.00042 38.3 7.6 99 110-213 113-217 (443)
132 PRK06703 flavodoxin; Provision 66.5 26 0.00055 31.1 7.4 86 111-206 3-91 (151)
133 cd00363 PFK Phosphofructokinas 64.5 22 0.00047 36.6 7.3 58 154-213 80-137 (338)
134 cd06341 PBP1_ABC_ligand_bindin 64.2 73 0.0016 31.9 11.2 77 109-189 132-211 (341)
135 cd06282 PBP1_GntR_like_2 Ligan 64.1 60 0.0013 30.8 10.1 66 131-203 19-85 (266)
136 cd06305 PBP1_methylthioribose_ 63.8 50 0.0011 31.6 9.5 66 131-203 19-86 (273)
137 cd06278 PBP1_LacI_like_2 Ligan 63.7 1.1E+02 0.0024 28.9 11.9 67 131-205 19-85 (266)
138 PF01936 NYN: NYN domain; Int 63.7 27 0.00058 30.3 6.9 59 131-189 50-118 (146)
139 PRK13869 plasmid-partitioning 62.4 43 0.00092 35.3 9.2 71 87-159 87-168 (405)
140 PF00365 PFK: Phosphofructokin 62.3 9.2 0.0002 38.2 4.0 52 156-214 82-133 (282)
141 PRK09590 celB cellobiose phosp 62.2 48 0.001 27.9 7.8 81 110-205 2-83 (104)
142 PRK10653 D-ribose transporter 61.3 61 0.0013 31.8 9.8 87 109-204 26-114 (295)
143 cd07062 Peptidase_S66_mccF_lik 61.1 23 0.0005 35.8 6.7 66 113-179 3-80 (308)
144 TIGR01162 purE phosphoribosyla 60.6 53 0.0012 29.8 8.2 71 129-208 13-87 (156)
145 PRK06555 pyrophosphate--fructo 60.6 28 0.0006 36.7 7.2 59 153-213 99-157 (403)
146 cd06318 PBP1_ABC_sugar_binding 60.4 63 0.0014 31.1 9.6 66 131-203 19-86 (282)
147 cd06312 PBP1_ABC_sugar_binding 59.5 70 0.0015 30.7 9.7 66 131-203 20-88 (271)
148 cd06300 PBP1_ABC_sugar_binding 59.5 59 0.0013 31.2 9.2 67 131-204 19-92 (272)
149 cd00764 Eukaryotic_PFK Phospho 58.9 20 0.00044 40.8 6.3 101 111-214 35-160 (762)
150 PRK11303 DNA-binding transcrip 58.9 88 0.0019 31.0 10.6 87 108-203 60-147 (328)
151 COG3340 PepE Peptidase E [Amin 58.9 36 0.00078 32.6 7.0 60 117-181 38-98 (224)
152 PRK04155 chaperone protein Hch 58.6 25 0.00055 35.2 6.4 17 164-180 145-161 (287)
153 cd06289 PBP1_MalI_like Ligand- 58.5 72 0.0016 30.2 9.6 79 117-203 6-85 (268)
154 cd01537 PBP1_Repressors_Sugar_ 57.6 78 0.0017 29.6 9.5 73 129-208 17-90 (264)
155 cd03133 GATase1_ES1 Type 1 glu 57.3 17 0.00036 34.9 4.7 52 160-215 76-142 (213)
156 PRK14173 bifunctional 5,10-met 57.3 1E+02 0.0022 31.0 10.3 81 89-173 9-94 (287)
157 cd06320 PBP1_allose_binding Pe 57.2 62 0.0014 31.1 8.9 83 112-203 2-88 (275)
158 PRK14188 bifunctional 5,10-met 57.1 94 0.002 31.3 10.2 97 89-189 8-116 (296)
159 PRK14072 6-phosphofructokinase 57.0 31 0.00068 36.5 7.1 60 153-214 90-149 (416)
160 PRK10014 DNA-binding transcrip 56.9 1.1E+02 0.0024 30.6 11.0 88 107-203 62-150 (342)
161 cd06304 PBP1_BmpA_like Peripla 56.9 74 0.0016 30.5 9.4 46 131-176 21-66 (260)
162 cd06313 PBP1_ABC_sugar_binding 56.8 51 0.0011 31.9 8.3 66 131-203 19-86 (272)
163 smart00115 CASc Caspase, inter 56.3 53 0.0012 31.9 8.1 71 107-177 5-84 (241)
164 cd06319 PBP1_ABC_sugar_binding 56.1 81 0.0017 30.2 9.5 66 131-203 19-86 (277)
165 PF01220 DHquinase_II: Dehydro 55.8 63 0.0014 28.8 7.6 43 129-172 30-72 (140)
166 cd06349 PBP1_ABC_ligand_bindin 55.8 1.6E+02 0.0034 29.4 11.9 77 109-189 135-213 (340)
167 cd01538 PBP1_ABC_xylose_bindin 55.4 64 0.0014 31.5 8.8 67 131-204 19-87 (288)
168 cd01743 GATase1_Anthranilate_S 55.3 47 0.001 30.5 7.3 48 129-181 10-57 (184)
169 TIGR02417 fruct_sucro_rep D-fr 55.1 1.3E+02 0.0027 30.0 11.0 88 107-203 58-146 (327)
170 PRK14192 bifunctional 5,10-met 54.8 1.2E+02 0.0026 30.4 10.5 80 89-172 9-97 (283)
171 cd06315 PBP1_ABC_sugar_binding 54.8 1E+02 0.0022 29.9 10.0 67 130-203 19-87 (280)
172 PLN02335 anthranilate synthase 54.6 49 0.0011 31.7 7.5 66 104-182 13-78 (222)
173 PRK06490 glutamine amidotransf 54.5 17 0.00037 35.4 4.3 61 108-180 6-66 (239)
174 cd03169 GATase1_PfpI_1 Type 1 54.2 20 0.00043 32.8 4.6 41 165-213 75-123 (180)
175 PRK13849 putative crown gall t 54.2 1.2E+02 0.0027 29.1 10.2 49 111-161 2-50 (231)
176 cd01539 PBP1_GGBP Periplasmic 54.1 85 0.0018 31.0 9.5 66 131-203 19-88 (303)
177 TIGR02478 6PF1K_euk 6-phosphof 53.8 22 0.00047 40.6 5.5 102 110-214 31-157 (745)
178 cd06324 PBP1_ABC_sugar_binding 53.7 97 0.0021 30.6 9.8 66 131-203 20-88 (305)
179 COG0014 ProA Gamma-glutamyl ph 53.6 24 0.00053 36.8 5.4 94 131-243 160-256 (417)
180 PF13458 Peripla_BP_6: Peripla 53.3 82 0.0018 31.3 9.3 77 109-189 135-213 (343)
181 COG0205 PfkA 6-phosphofructoki 53.2 55 0.0012 33.8 7.9 51 156-213 84-134 (347)
182 TIGR02478 6PF1K_euk 6-phosphof 52.9 43 0.00094 38.2 7.7 100 110-213 420-524 (745)
183 COG4635 HemG Flavodoxin [Energ 52.8 25 0.00055 32.0 4.7 83 111-204 2-86 (175)
184 cd06267 PBP1_LacI_sugar_bindin 52.8 1.2E+02 0.0026 28.3 10.0 67 129-203 17-84 (264)
185 cd06317 PBP1_ABC_sugar_binding 52.5 1.2E+02 0.0026 28.8 10.1 68 129-203 18-87 (275)
186 PF00532 Peripla_BP_1: Peripla 52.5 1E+02 0.0022 30.3 9.7 86 111-206 3-88 (279)
187 PLN02884 6-phosphofructokinase 52.1 26 0.00056 37.1 5.4 99 110-213 85-188 (411)
188 cd06299 PBP1_LacI_like_13 Liga 52.0 1.4E+02 0.0029 28.4 10.3 65 131-203 19-84 (265)
189 PRK05670 anthranilate synthase 51.9 33 0.00072 31.8 5.7 49 128-181 10-58 (189)
190 cd01540 PBP1_arabinose_binding 51.8 90 0.0019 30.2 9.1 66 131-203 19-85 (289)
191 PF07015 VirC1: VirC1 protein; 51.8 48 0.001 32.2 6.8 97 111-214 2-101 (231)
192 cd03132 GATase1_catalase Type 51.7 30 0.00064 30.2 5.1 66 110-180 2-76 (142)
193 cd06296 PBP1_CatR_like Ligand- 51.7 1.4E+02 0.003 28.4 10.3 65 131-203 19-84 (270)
194 TIGR00640 acid_CoA_mut_C methy 51.7 79 0.0017 27.7 7.7 72 113-189 5-76 (132)
195 cd04509 PBP1_ABC_transporter_G 51.7 1.5E+02 0.0033 28.1 10.7 77 109-189 136-214 (299)
196 PRK14194 bifunctional 5,10-met 51.3 1.4E+02 0.0031 30.1 10.4 81 89-173 10-98 (301)
197 cd06273 PBP1_GntR_like_1 This 51.2 1.5E+02 0.0032 28.2 10.4 65 131-203 19-84 (268)
198 cd03129 GAT1_Peptidase_E_like 50.7 79 0.0017 29.8 8.2 65 108-178 28-92 (210)
199 PRK14181 bifunctional 5,10-met 50.4 1.6E+02 0.0035 29.5 10.5 79 90-172 7-90 (287)
200 PRK07308 flavodoxin; Validated 50.3 77 0.0017 27.9 7.6 87 111-207 3-92 (146)
201 PRK13566 anthranilate synthase 50.0 2.7E+02 0.0058 31.8 13.4 59 108-180 525-583 (720)
202 cd05564 PTS_IIB_chitobiose_lic 49.9 70 0.0015 26.3 6.7 73 121-205 7-79 (96)
203 cd06323 PBP1_ribose_binding Pe 49.0 1E+02 0.0023 29.1 9.0 66 131-203 19-86 (268)
204 PRK14176 bifunctional 5,10-met 49.0 1.7E+02 0.0037 29.4 10.4 80 89-172 14-102 (287)
205 PRK14189 bifunctional 5,10-met 48.9 1.8E+02 0.0039 29.2 10.5 80 89-172 9-96 (285)
206 PF13407 Peripla_BP_4: Peripla 48.5 99 0.0021 29.3 8.7 84 115-206 3-89 (257)
207 PRK06718 precorrin-2 dehydroge 48.4 1.8E+02 0.0039 27.4 10.1 53 136-188 28-92 (202)
208 PRK15395 methyl-galactoside AB 48.2 1.5E+02 0.0033 29.8 10.3 89 107-204 22-113 (330)
209 TIGR01007 eps_fam capsular exo 48.2 91 0.002 29.0 8.1 55 98-154 5-59 (204)
210 PRK14179 bifunctional 5,10-met 48.0 1.8E+02 0.004 29.1 10.5 80 89-172 8-96 (284)
211 cd06301 PBP1_rhizopine_binding 47.9 1.2E+02 0.0027 28.8 9.3 66 131-203 19-87 (272)
212 PF00117 GATase: Glutamine ami 47.8 20 0.00043 33.1 3.5 49 129-181 9-57 (192)
213 COG2984 ABC-type uncharacteriz 47.4 1.7E+02 0.0037 29.8 10.1 102 88-200 141-242 (322)
214 cd06366 PBP1_GABAb_receptor Li 47.3 2E+02 0.0042 28.9 11.0 89 96-189 123-215 (350)
215 PRK14180 bifunctional 5,10-met 47.1 1.7E+02 0.0038 29.2 10.1 77 108-188 31-114 (282)
216 cd06281 PBP1_LacI_like_5 Ligan 46.7 1.4E+02 0.003 28.5 9.4 69 131-206 19-88 (269)
217 cd01545 PBP1_SalR Ligand-bindi 46.6 1.6E+02 0.0035 27.9 9.8 66 131-203 19-86 (270)
218 PRK10792 bifunctional 5,10-met 46.5 2E+02 0.0043 28.9 10.5 81 89-173 9-98 (285)
219 cd06270 PBP1_GalS_like Ligand 46.5 1.9E+02 0.0042 27.4 10.4 67 130-204 18-85 (268)
220 TIGR00730 conserved hypothetic 46.5 23 0.00049 32.9 3.6 48 152-206 18-66 (178)
221 cd06322 PBP1_ABC_sugar_binding 46.3 1.2E+02 0.0026 28.8 9.0 67 130-203 18-86 (267)
222 PRK05568 flavodoxin; Provision 46.3 58 0.0013 28.3 6.1 55 110-174 2-56 (142)
223 cd03027 GRX_DEP Glutaredoxin ( 46.1 1.3E+02 0.0028 22.8 8.0 59 111-176 2-60 (73)
224 PLN02897 tetrahydrofolate dehy 46.0 1.8E+02 0.0039 30.0 10.2 98 89-189 62-170 (345)
225 PRK14174 bifunctional 5,10-met 45.9 2E+02 0.0043 29.0 10.4 79 90-172 8-95 (295)
226 cd00886 MogA_MoaB MogA_MoaB fa 45.9 96 0.0021 27.7 7.5 58 131-188 23-88 (152)
227 PRK06774 para-aminobenzoate sy 45.9 42 0.00091 31.2 5.4 49 129-182 11-59 (191)
228 cd06271 PBP1_AglR_RafR_like Li 45.2 1.6E+02 0.0035 27.7 9.6 65 131-203 23-88 (268)
229 TIGR00725 conserved hypothetic 45.1 28 0.0006 31.7 3.9 48 153-207 18-65 (159)
230 COG1609 PurR Transcriptional r 45.1 1.9E+02 0.0042 29.3 10.5 66 107-174 56-122 (333)
231 TIGR03590 PseG pseudaminic aci 45.1 1.4E+02 0.003 29.5 9.3 28 166-205 241-268 (279)
232 PRK10355 xylF D-xylose transpo 45.0 1.7E+02 0.0037 29.5 10.2 86 109-203 25-112 (330)
233 cd06345 PBP1_ABC_ligand_bindin 44.8 2.8E+02 0.0061 27.7 11.7 79 107-189 142-222 (344)
234 PRK14168 bifunctional 5,10-met 44.6 2E+02 0.0044 29.0 10.2 79 90-172 10-97 (297)
235 PRK14182 bifunctional 5,10-met 44.6 2.2E+02 0.0047 28.6 10.3 80 90-173 8-95 (282)
236 PRK14184 bifunctional 5,10-met 44.5 2.3E+02 0.0049 28.5 10.5 79 90-172 8-95 (286)
237 cd06302 PBP1_LsrB_Quorum_Sensi 44.1 1.6E+02 0.0034 29.0 9.5 66 131-203 19-87 (298)
238 PRK10703 DNA-binding transcrip 43.8 2.2E+02 0.0047 28.4 10.7 86 110-204 60-146 (341)
239 PRK09271 flavodoxin; Provision 43.7 60 0.0013 29.2 5.9 70 111-186 2-74 (160)
240 PRK06895 putative anthranilate 43.5 57 0.0012 30.3 5.9 54 110-178 2-55 (190)
241 cd06333 PBP1_ABC-type_HAAT_lik 43.5 3.3E+02 0.0071 26.7 13.7 78 108-189 132-211 (312)
242 PRK11104 hemG protoporphyrinog 43.2 41 0.00089 31.0 4.8 84 111-206 2-87 (177)
243 cd01542 PBP1_TreR_like Ligand- 43.2 1.6E+02 0.0034 27.8 9.1 67 129-203 17-84 (259)
244 PLN02616 tetrahydrofolate dehy 43.2 2.2E+02 0.0048 29.5 10.4 80 89-172 79-167 (364)
245 COG1433 Uncharacterized conser 43.0 1.4E+02 0.003 25.9 7.7 72 109-190 36-108 (121)
246 cd06309 PBP1_YtfQ_like Peripla 42.8 1.1E+02 0.0023 29.4 8.0 66 131-203 19-86 (273)
247 TIGR02069 cyanophycinase cyano 42.8 92 0.002 30.5 7.4 47 129-177 44-93 (250)
248 cd06316 PBP1_ABC_sugar_binding 42.6 1.6E+02 0.0034 28.7 9.3 66 131-203 19-87 (294)
249 TIGR01737 FGAM_synth_I phospho 42.3 1.5E+02 0.0033 28.4 8.8 50 110-176 1-50 (227)
250 TIGR01754 flav_RNR ribonucleot 42.2 67 0.0015 28.1 5.8 85 111-206 2-90 (140)
251 COG1646 Predicted phosphate-bi 41.8 78 0.0017 30.7 6.4 78 131-210 5-83 (240)
252 cd06335 PBP1_ABC_ligand_bindin 41.8 3.1E+02 0.0067 27.5 11.5 77 109-189 138-216 (347)
253 PRK09426 methylmalonyl-CoA mut 41.8 1.7E+02 0.0038 33.3 10.3 60 128-189 597-656 (714)
254 PRK14178 bifunctional 5,10-met 41.8 2.1E+02 0.0046 28.6 9.8 80 90-172 7-90 (279)
255 cd05802 GlmM GlmM is a bacteri 41.6 1E+02 0.0023 32.6 8.2 80 91-177 150-239 (434)
256 cd06329 PBP1_SBP_like_3 Peripl 41.2 3.3E+02 0.0072 27.2 11.6 103 81-189 117-224 (342)
257 cd06279 PBP1_LacI_like_3 Ligan 41.2 2E+02 0.0044 27.7 9.8 63 130-203 23-85 (283)
258 KOG0333 U5 snRNP-like RNA heli 41.1 1.7E+02 0.0037 32.0 9.3 84 76-172 489-573 (673)
259 cd00032 CASc Caspase, interleu 41.1 1.1E+02 0.0024 29.5 7.7 72 107-178 6-86 (243)
260 PF03358 FMN_red: NADPH-depend 41.0 1.2E+02 0.0027 26.4 7.5 40 111-151 2-41 (152)
261 cd01744 GATase1_CPSase Small c 41.0 1.1E+02 0.0024 27.9 7.4 43 133-181 12-54 (178)
262 cd06283 PBP1_RegR_EndR_KdgR_li 40.8 2.3E+02 0.0049 26.7 9.9 68 129-204 17-85 (267)
263 PF09419 PGP_phosphatase: Mito 40.7 2.5E+02 0.0054 25.8 9.4 88 90-185 62-153 (168)
264 cd06342 PBP1_ABC_LIVBP_like Ty 40.6 2.4E+02 0.0052 27.8 10.4 78 108-189 134-213 (334)
265 cd03089 PMM_PGM The phosphoman 40.6 1.4E+02 0.0031 31.6 9.1 79 91-177 145-236 (443)
266 PRK14324 glmM phosphoglucosami 40.6 1.2E+02 0.0026 32.3 8.5 81 91-177 155-245 (446)
267 TIGR02634 xylF D-xylose ABC tr 40.5 1.8E+02 0.0038 28.8 9.3 66 130-203 17-85 (302)
268 cd01742 GATase1_GMP_Synthase T 40.4 40 0.00087 30.8 4.3 44 131-180 12-55 (181)
269 cd02037 MRP-like MRP (Multiple 40.4 81 0.0018 28.3 6.3 39 113-153 2-40 (169)
270 cd06306 PBP1_TorT-like TorT-li 40.3 1.8E+02 0.0039 27.9 9.1 66 131-203 19-87 (268)
271 PRK00286 xseA exodeoxyribonucl 40.1 4.7E+02 0.01 27.6 12.9 67 109-182 135-208 (438)
272 cd01251 PH_centaurin_alpha Cen 40.1 36 0.00078 28.4 3.5 26 79-104 76-101 (103)
273 cd06303 PBP1_LuxPQ_Quorum_Sens 39.7 1.5E+02 0.0032 28.7 8.5 59 131-189 20-83 (280)
274 cd02042 ParA ParA and ParB of 39.7 1.7E+02 0.0038 23.5 7.7 56 113-184 2-57 (104)
275 cd03148 GATase1_EcHsp31_like T 39.6 42 0.0009 32.5 4.4 17 164-180 94-110 (232)
276 cd03146 GAT1_Peptidase_E Type 39.5 99 0.0022 29.3 6.9 80 98-188 19-100 (212)
277 PRK12412 pyridoxal kinase; Rev 39.4 75 0.0016 31.2 6.3 75 155-229 157-233 (268)
278 cd00861 ProRS_anticodon_short 39.4 83 0.0018 25.0 5.6 46 129-176 19-64 (94)
279 PLN02285 methionyl-tRNA formyl 39.2 79 0.0017 32.4 6.6 64 110-174 37-101 (334)
280 cd06360 PBP1_alkylbenzenes_lik 38.8 2.8E+02 0.006 27.4 10.5 77 109-189 134-212 (336)
281 PRK14193 bifunctional 5,10-met 38.4 3.3E+02 0.0072 27.3 10.6 80 89-172 9-96 (284)
282 cd01575 PBP1_GntR Ligand-bindi 38.4 2.3E+02 0.0051 26.6 9.6 65 131-203 19-84 (268)
283 PRK11253 ldcA L,D-carboxypepti 38.3 82 0.0018 31.8 6.5 65 113-179 4-80 (305)
284 PRK01175 phosphoribosylformylg 38.3 58 0.0012 32.2 5.2 54 110-175 4-57 (261)
285 cd06297 PBP1_LacI_like_12 Liga 38.2 2.8E+02 0.0061 26.4 10.2 66 130-203 18-84 (269)
286 PRK07765 para-aminobenzoate sy 38.2 2.2E+02 0.0047 27.1 9.0 48 131-181 14-61 (214)
287 TIGR00322 diphth2_R diphthamid 38.1 2E+02 0.0043 29.5 9.3 77 92-174 215-291 (332)
288 cd03028 GRX_PICOT_like Glutare 38.1 2E+02 0.0044 23.0 7.7 52 109-162 7-58 (90)
289 TIGR01455 glmM phosphoglucosam 38.0 1.5E+02 0.0032 31.5 8.7 81 91-177 152-242 (443)
290 PRK14171 bifunctional 5,10-met 38.0 3.2E+02 0.0069 27.5 10.4 62 108-173 32-97 (288)
291 PRK15404 leucine ABC transport 37.9 4.1E+02 0.0089 27.1 11.8 78 108-189 160-239 (369)
292 cd06277 PBP1_LacI_like_1 Ligan 37.8 3.2E+02 0.0068 25.9 10.4 64 131-203 22-86 (268)
293 cd06298 PBP1_CcpA_like Ligand- 37.8 2.6E+02 0.0056 26.3 9.8 65 131-203 19-84 (268)
294 PLN02516 methylenetetrahydrofo 37.7 2.9E+02 0.0063 27.9 10.1 97 89-189 15-123 (299)
295 PRK14317 glmM phosphoglucosami 37.6 1.5E+02 0.0033 31.6 8.8 81 91-177 168-258 (465)
296 PF06506 PrpR_N: Propionate ca 37.6 3.1E+02 0.0067 25.0 9.8 66 108-185 76-141 (176)
297 PRK14187 bifunctional 5,10-met 37.5 3.3E+02 0.0072 27.5 10.5 78 91-172 10-96 (294)
298 TIGR01382 PfpI intracellular p 37.5 66 0.0014 28.7 5.2 14 165-178 59-72 (166)
299 TIGR00853 pts-lac PTS system, 37.5 1E+02 0.0022 25.3 5.8 80 109-205 3-83 (95)
300 PRK14190 bifunctional 5,10-met 37.4 2.6E+02 0.0057 28.0 9.7 80 90-172 10-96 (284)
301 PRK05569 flavodoxin; Provision 37.3 96 0.0021 26.9 6.1 55 111-175 3-57 (141)
302 PRK14172 bifunctional 5,10-met 37.2 3.4E+02 0.0073 27.2 10.4 80 90-173 9-97 (278)
303 COG1432 Uncharacterized conser 37.0 73 0.0016 29.6 5.4 46 155-207 99-144 (181)
304 PRK14186 bifunctional 5,10-met 36.9 3.4E+02 0.0073 27.4 10.4 80 90-173 9-97 (297)
305 cd06221 sulfite_reductase_like 36.7 1.6E+02 0.0034 28.6 8.0 78 109-189 127-212 (253)
306 TIGR01481 ccpA catabolite cont 36.6 3.8E+02 0.0082 26.4 11.1 67 108-176 58-125 (329)
307 cd06326 PBP1_STKc_like Type I 36.6 4.3E+02 0.0092 26.0 12.5 77 109-189 136-214 (336)
308 cd05805 MPG1_transferase GTP-m 36.6 1.5E+02 0.0034 31.3 8.6 81 91-177 147-239 (441)
309 PRK09542 manB phosphomannomuta 36.5 1.8E+02 0.004 30.8 9.1 80 91-177 145-237 (445)
310 PRK14191 bifunctional 5,10-met 36.5 3.5E+02 0.0077 27.1 10.5 80 90-172 8-95 (285)
311 COG4242 CphB Cyanophycinase an 36.3 97 0.0021 30.4 6.1 75 98-177 40-117 (293)
312 PRK14185 bifunctional 5,10-met 36.3 2.8E+02 0.0061 28.0 9.7 80 90-173 8-96 (293)
313 cd06352 PBP1_NPR_GC_like Ligan 36.2 2.6E+02 0.0057 28.4 10.1 102 81-189 112-217 (389)
314 cd03087 PGM_like1 This archaea 36.2 1.7E+02 0.0037 31.0 8.8 80 91-177 145-236 (439)
315 PLN03028 pyrophosphate--fructo 36.1 68 0.0015 35.7 5.8 101 109-213 111-218 (610)
316 PRK09701 D-allose transporter 36.0 1.8E+02 0.0039 28.9 8.5 87 108-203 23-113 (311)
317 PRK14169 bifunctional 5,10-met 36.0 3E+02 0.0065 27.6 9.8 80 90-172 8-94 (282)
318 CHL00101 trpG anthranilate syn 35.9 69 0.0015 29.8 5.1 48 129-181 11-58 (190)
319 PRK14315 glmM phosphoglucosami 35.9 1.6E+02 0.0034 31.4 8.5 80 92-177 157-246 (448)
320 PLN02251 pyrophosphate-depende 35.9 53 0.0012 36.2 4.9 103 109-215 128-237 (568)
321 cd01574 PBP1_LacI Ligand-bindi 35.9 3.1E+02 0.0068 25.8 10.0 50 130-179 18-69 (264)
322 PRK14183 bifunctional 5,10-met 35.8 3.6E+02 0.0079 27.0 10.4 79 90-172 8-95 (281)
323 PTZ00287 6-phosphofructokinase 35.8 66 0.0014 39.1 5.9 79 131-213 889-973 (1419)
324 PRK14987 gluconate operon tran 35.7 3.5E+02 0.0076 26.8 10.7 86 108-203 62-148 (331)
325 cd03128 GAT_1 Type 1 glutamine 35.5 85 0.0018 23.1 4.9 68 132-207 16-89 (92)
326 cd06321 PBP1_ABC_sugar_binding 35.5 1.9E+02 0.0041 27.6 8.4 67 131-204 19-89 (271)
327 KOG3857 Alcohol dehydrogenase, 35.4 71 0.0015 32.9 5.2 68 109-184 70-144 (465)
328 PF00462 Glutaredoxin: Glutare 35.2 1.4E+02 0.0031 21.5 5.8 33 130-162 12-44 (60)
329 cd03026 AhpF_NTD_C TRX-GRX-lik 35.2 1.5E+02 0.0032 24.0 6.3 68 99-172 3-71 (89)
330 PF05893 LuxC: Acyl-CoA reduct 35.2 48 0.001 34.9 4.4 50 156-206 159-209 (399)
331 TIGR02026 BchE magnesium-proto 35.1 1E+02 0.0022 33.4 6.9 59 114-172 3-69 (497)
332 cd00765 Pyrophosphate_PFK Phos 35.0 73 0.0016 35.0 5.8 101 108-214 103-212 (550)
333 COG2185 Sbm Methylmalonyl-CoA 35.0 2E+02 0.0044 25.7 7.6 60 127-188 26-85 (143)
334 cd01653 GATase1 Type 1 glutami 34.8 60 0.0013 25.3 4.1 47 132-182 16-62 (115)
335 PRK14175 bifunctional 5,10-met 34.7 3.1E+02 0.0067 27.5 9.7 94 90-187 10-114 (286)
336 cd06274 PBP1_FruR Ligand bindi 34.4 3.7E+02 0.0079 25.4 10.2 65 131-203 19-84 (264)
337 cd06311 PBP1_ABC_sugar_binding 34.3 2.6E+02 0.0056 26.7 9.2 69 131-206 19-94 (274)
338 PRK05637 anthranilate synthase 34.3 1.1E+02 0.0023 29.1 6.2 46 131-182 15-60 (208)
339 cd06354 PBP1_BmpA_PnrA_like Pe 34.3 1.5E+02 0.0031 28.7 7.4 45 131-175 22-66 (265)
340 PRK05395 3-dehydroquinate dehy 34.1 1.4E+02 0.0031 26.7 6.5 42 130-172 32-73 (146)
341 cd01235 PH_SETbf Set binding f 34.0 42 0.00092 27.2 3.0 24 80-103 78-101 (101)
342 PF12138 Spherulin4: Spherulat 34.0 83 0.0018 30.9 5.5 44 109-152 30-79 (253)
343 TIGR02667 moaB_proteo molybden 33.9 2.4E+02 0.0051 25.6 8.2 59 131-189 25-91 (163)
344 cd06308 PBP1_sensor_kinase_lik 33.8 2.7E+02 0.0059 26.4 9.3 67 130-203 18-87 (270)
345 PRK13015 3-dehydroquinate dehy 33.8 1.4E+02 0.0031 26.8 6.4 43 129-172 31-73 (146)
346 cd06347 PBP1_ABC_ligand_bindin 33.5 4.5E+02 0.0098 25.7 11.1 77 109-188 135-213 (334)
347 TIGR02955 TMAO_TorT TMAO reduc 33.3 2.8E+02 0.0061 27.0 9.4 56 131-186 19-78 (295)
348 smart00852 MoCF_biosynth Proba 33.1 92 0.002 27.0 5.2 57 131-188 21-84 (135)
349 PRK11574 oxidative-stress-resi 33.1 1.3E+02 0.0029 27.7 6.6 65 109-178 2-78 (196)
350 cd06343 PBP1_ABC_ligand_bindin 33.0 3E+02 0.0066 27.6 9.9 77 109-189 144-222 (362)
351 PRK07085 diphosphate--fructose 32.9 79 0.0017 34.8 5.6 103 107-213 100-209 (555)
352 TIGR00177 molyb_syn molybdenum 32.9 1.3E+02 0.0028 26.6 6.1 56 131-187 30-92 (144)
353 TIGR01815 TrpE-clade3 anthrani 32.8 8E+02 0.017 28.1 13.9 45 131-181 530-574 (717)
354 cd01540 PBP1_arabinose_binding 32.7 4.5E+02 0.0097 25.1 10.9 105 84-189 103-216 (289)
355 TIGR02477 PFKA_PPi diphosphate 32.7 50 0.0011 36.2 4.0 102 108-213 98-206 (539)
356 PRK12616 pyridoxal kinase; Rev 32.4 1.2E+02 0.0026 29.8 6.5 25 205-229 212-236 (270)
357 PRK09267 flavodoxin FldA; Vali 32.3 1.1E+02 0.0024 27.6 5.8 85 110-206 2-89 (169)
358 cd01740 GATase1_FGAR_AT Type 1 32.2 1.4E+02 0.003 28.9 6.8 53 113-177 2-54 (238)
359 cd06386 PBP1_NPR_C_like Ligand 32.1 3.4E+02 0.0074 27.9 10.1 79 108-188 136-216 (387)
360 PRK14177 bifunctional 5,10-met 31.9 4.5E+02 0.0098 26.4 10.3 78 91-172 11-97 (284)
361 PRK14314 glmM phosphoglucosami 31.8 1.9E+02 0.0042 30.7 8.4 50 92-147 158-207 (450)
362 cd06294 PBP1_ycjW_transcriptio 31.8 3.6E+02 0.0078 25.4 9.7 66 130-203 23-89 (270)
363 TIGR00365 monothiol glutaredox 31.8 2.9E+02 0.0062 22.6 8.2 52 109-162 11-62 (97)
364 PF03129 HGTP_anticodon: Antic 31.6 1.7E+02 0.0038 23.2 6.3 60 114-176 3-62 (94)
365 PRK05562 precorrin-2 dehydroge 31.5 3.4E+02 0.0073 26.2 9.1 58 131-189 39-108 (223)
366 cd03134 GATase1_PfpI_like A ty 31.2 71 0.0015 28.5 4.3 14 165-178 61-74 (165)
367 cd06292 PBP1_LacI_like_10 Liga 31.2 3.9E+02 0.0085 25.3 9.9 68 129-203 17-89 (273)
368 cd08196 DHQS-like1 Dehydroquin 31.0 3.1E+02 0.0066 28.3 9.4 81 110-205 20-110 (346)
369 cd06284 PBP1_LacI_like_6 Ligan 30.8 2.1E+02 0.0046 26.9 7.9 50 129-178 17-67 (267)
370 PRK10116 universal stress prot 30.5 2E+02 0.0043 24.5 6.9 66 133-205 69-139 (142)
371 cd03145 GAT1_cyanophycinase Ty 30.5 1.8E+02 0.0039 27.7 7.1 65 108-178 28-95 (217)
372 cd01230 PH_EFA6 EFA6 Pleckstri 30.5 68 0.0015 27.6 3.8 27 80-106 88-114 (117)
373 cd03031 GRX_GRX_like Glutaredo 30.3 4E+02 0.0087 23.8 9.0 103 112-215 2-123 (147)
374 cd06272 PBP1_hexuronate_repres 30.3 4.1E+02 0.0088 25.0 9.8 44 131-177 19-62 (261)
375 PRK10423 transcriptional repre 30.2 2.9E+02 0.0062 27.2 8.9 70 107-178 54-124 (327)
376 cd06334 PBP1_ABC_ligand_bindin 30.1 5.9E+02 0.013 25.7 13.2 78 108-189 139-218 (351)
377 COG1570 XseA Exonuclease VII, 30.1 7.1E+02 0.015 26.6 13.8 85 91-182 105-209 (440)
378 PRK15118 universal stress glob 30.0 1.7E+02 0.0036 25.2 6.4 67 132-205 69-139 (144)
379 cd06293 PBP1_LacI_like_11 Liga 29.7 4.3E+02 0.0094 24.9 9.9 66 131-204 19-85 (269)
380 cd06348 PBP1_ABC_ligand_bindin 29.7 3.3E+02 0.0071 27.2 9.3 79 108-189 135-215 (344)
381 COG1691 NCAIR mutase (PurE)-re 29.6 3.5E+02 0.0075 26.3 8.5 74 129-211 132-209 (254)
382 cd00466 DHQase_II Dehydroquina 29.5 1.9E+02 0.0041 25.8 6.4 43 129-172 29-71 (140)
383 cd05803 PGM_like4 This PGM-lik 29.5 2E+02 0.0043 30.5 8.0 80 92-177 151-244 (445)
384 TIGR03682 arCOG04112 arCOG0411 29.4 3.1E+02 0.0067 27.8 8.9 65 103-174 206-270 (308)
385 cd05799 PGM2 This CD includes 29.3 2.5E+02 0.0054 30.2 8.7 48 90-143 163-212 (487)
386 PF03698 UPF0180: Uncharacteri 29.2 97 0.0021 24.9 4.1 36 131-177 11-46 (80)
387 PRK14318 glmM phosphoglucosami 29.2 2.3E+02 0.005 30.1 8.4 79 91-177 157-245 (448)
388 cd06325 PBP1_ABC_uncharacteriz 29.2 5E+02 0.011 24.6 10.6 78 107-189 129-206 (281)
389 COG0859 RfaF ADP-heptose:LPS h 29.2 1.3E+02 0.0029 30.5 6.4 72 111-187 175-250 (334)
390 PRK08284 precorrin 6A synthase 29.1 95 0.0021 30.5 5.0 51 165-215 102-153 (253)
391 PRK08857 para-aminobenzoate sy 29.1 1.4E+02 0.003 27.8 5.9 48 129-181 11-58 (193)
392 PF01965 DJ-1_PfpI: DJ-1/PfpI 28.9 44 0.00094 29.5 2.4 51 160-214 31-87 (147)
393 PRK09273 hypothetical protein; 28.6 1.6E+02 0.0035 28.1 6.2 32 115-147 5-36 (211)
394 PRK05948 precorrin-2 methyltra 28.6 2.9E+02 0.0062 26.8 8.2 50 165-215 91-141 (238)
395 cd06346 PBP1_ABC_ligand_bindin 28.5 5.6E+02 0.012 25.1 10.8 77 109-189 137-215 (312)
396 PRK10936 TMAO reductase system 28.5 5.8E+02 0.013 25.7 11.0 100 94-203 26-134 (343)
397 PRK10887 glmM phosphoglucosami 28.2 2.3E+02 0.0049 30.1 8.1 50 92-147 152-201 (443)
398 PRK00232 pdxA 4-hydroxythreoni 28.2 2E+02 0.0042 29.6 7.2 64 105-174 199-267 (332)
399 cd03012 TlpA_like_DipZ_like Tl 28.1 3.6E+02 0.0079 22.6 8.4 89 84-179 30-118 (126)
400 cd01391 Periplasmic_Binding_Pr 28.0 4.6E+02 0.01 23.8 11.3 97 84-189 104-204 (269)
401 PRK14166 bifunctional 5,10-met 27.9 5.9E+02 0.013 25.5 10.4 78 91-172 9-94 (282)
402 cd03522 MoeA_like MoeA_like. T 27.9 2.9E+02 0.0063 28.1 8.4 69 107-177 157-230 (312)
403 PF01075 Glyco_transf_9: Glyco 27.6 1.5E+02 0.0032 28.2 6.1 75 110-188 104-183 (247)
404 TIGR00237 xseA exodeoxyribonuc 27.5 7.6E+02 0.017 26.2 14.3 68 108-182 128-203 (432)
405 COG1619 LdcA Uncharacterized p 27.5 1.6E+02 0.0035 29.9 6.4 67 110-178 10-87 (313)
406 PRK00005 fmt methionyl-tRNA fo 27.4 2E+02 0.0044 28.9 7.3 72 109-183 24-95 (309)
407 TIGR00272 DPH2 diphthamide bio 27.2 3.1E+02 0.0067 29.8 8.9 66 103-174 275-340 (496)
408 TIGR03453 partition_RepA plasm 27.1 1.9E+02 0.0042 30.0 7.3 70 87-158 72-150 (387)
409 TIGR01088 aroQ 3-dehydroquinat 27.0 2.2E+02 0.0049 25.4 6.4 43 129-172 29-71 (141)
410 PRK09492 treR trehalose repres 27.0 2.4E+02 0.0053 27.6 7.7 78 110-189 176-254 (315)
411 PRK14320 glmM phosphoglucosami 26.9 2.9E+02 0.0063 29.3 8.7 79 92-177 154-242 (443)
412 PRK03743 pdxA 4-hydroxythreoni 26.7 2.2E+02 0.0049 29.2 7.3 61 107-173 201-266 (332)
413 PRK03371 pdxA 4-hydroxythreoni 26.6 2.2E+02 0.0048 29.1 7.3 62 107-174 200-266 (326)
414 cd01233 Unc104 Unc-104 pleckst 26.6 67 0.0015 26.4 3.0 25 79-103 74-98 (100)
415 PF00994 MoCF_biosynth: Probab 26.5 1.6E+02 0.0034 25.8 5.6 58 131-189 20-84 (144)
416 PRK03619 phosphoribosylformylg 26.4 3.7E+02 0.0081 25.5 8.6 50 111-177 2-52 (219)
417 PF00169 PH: PH domain; Inter 26.3 75 0.0016 24.9 3.2 24 80-103 80-103 (104)
418 cd06336 PBP1_ABC_ligand_bindin 26.3 5.8E+02 0.013 25.5 10.5 78 108-189 137-217 (347)
419 COG0521 MoaB Molybdopterin bio 26.3 1.8E+02 0.0039 26.8 5.9 59 131-189 30-95 (169)
420 TIGR00566 trpG_papA glutamine 25.7 1.5E+02 0.0033 27.4 5.5 48 129-181 11-58 (188)
421 PRK11249 katE hydroperoxidase 25.6 1.2E+02 0.0026 34.6 5.6 63 110-177 598-669 (752)
422 COG0041 PurE Phosphoribosylcar 25.6 3.7E+02 0.008 24.5 7.5 57 111-172 4-63 (162)
423 cd06358 PBP1_NHase Type I peri 25.6 6.6E+02 0.014 24.8 10.8 78 108-189 131-210 (333)
424 PHA02518 ParA-like protein; Pr 25.5 2.4E+02 0.0052 25.9 7.0 47 112-160 2-48 (211)
425 TIGR02434 CobF precorrin-6A sy 25.5 1E+02 0.0022 30.2 4.5 51 165-215 101-152 (249)
426 TIGR01120 rpiB ribose 5-phosph 25.5 2.2E+02 0.0049 25.4 6.3 57 129-216 13-75 (143)
427 PRK14170 bifunctional 5,10-met 25.3 5.6E+02 0.012 25.7 9.7 94 91-188 10-114 (284)
428 cd01265 PH_PARIS-1 PARIS-1 ple 25.2 80 0.0017 25.8 3.2 23 80-102 71-93 (95)
429 cd05800 PGM_like2 This PGM-lik 25.1 3.6E+02 0.0078 28.7 9.0 80 92-177 153-245 (461)
430 PRK02746 pdxA 4-hydroxythreoni 25.1 2.4E+02 0.0052 29.1 7.2 65 106-174 203-280 (345)
431 PRK10401 DNA-binding transcrip 24.9 6.9E+02 0.015 24.8 11.0 67 108-176 58-125 (346)
432 cd06290 PBP1_LacI_like_9 Ligan 24.9 3.3E+02 0.0072 25.6 8.1 47 131-177 19-66 (265)
433 cd03088 ManB ManB is a bacteri 24.9 4E+02 0.0086 28.4 9.3 80 91-177 146-236 (459)
434 PTZ00062 glutaredoxin; Provisi 24.8 3.4E+02 0.0073 25.8 7.7 67 103-176 106-177 (204)
435 PRK11175 universal stress prot 24.8 3.1E+02 0.0066 27.0 8.0 69 135-209 76-150 (305)
436 COG2240 PdxK Pyridoxal/pyridox 24.8 1.8E+02 0.0039 29.1 6.0 105 110-216 103-224 (281)
437 cd01541 PBP1_AraR Ligand-bindi 24.7 4E+02 0.0086 25.3 8.6 66 131-203 19-89 (273)
438 PRK14316 glmM phosphoglucosami 24.7 3.2E+02 0.007 29.0 8.5 78 92-177 156-243 (448)
439 cd00758 MoCF_BD MoCF_BD: molyb 24.7 1.9E+02 0.0042 25.0 5.7 57 131-188 22-85 (133)
440 cd01220 PH_CDEP Chondrocyte-de 24.6 96 0.0021 25.8 3.6 26 79-104 73-98 (99)
441 TIGR01969 minD_arch cell divis 24.5 2.2E+02 0.0048 27.0 6.7 39 111-151 1-39 (251)
442 PRK13527 glutamine amidotransf 24.5 2.4E+02 0.0051 26.3 6.7 43 129-180 15-57 (200)
443 cd05801 PGM_like3 This bacteri 24.4 3.1E+02 0.0068 29.8 8.5 51 91-147 189-240 (522)
444 cd06307 PBP1_uncharacterized_s 24.4 4.6E+02 0.01 24.9 9.0 65 131-203 19-89 (275)
445 TIGR00888 guaA_Nterm GMP synth 24.3 2.4E+02 0.0052 25.9 6.6 46 129-180 10-55 (188)
446 cd01988 Na_H_Antiporter_C The 24.3 4E+02 0.0088 21.9 11.3 67 131-203 59-131 (132)
447 PRK15122 magnesium-transportin 24.3 2.8E+02 0.0061 32.6 8.5 94 132-237 557-694 (903)
448 cd05565 PTS_IIB_lactose PTS_II 24.3 2.2E+02 0.0047 23.7 5.6 79 111-205 2-80 (99)
449 smart00233 PH Pleckstrin homol 24.2 84 0.0018 24.1 3.1 24 80-103 78-101 (102)
450 cd06350 PBP1_GPCR_family_C_lik 24.2 7E+02 0.015 24.6 11.1 77 109-189 160-240 (348)
451 PRK15414 phosphomannomutase Cp 24.2 4.1E+02 0.0088 28.4 9.2 82 92-177 152-248 (456)
452 PLN02404 6,7-dimethyl-8-ribity 24.1 2.3E+02 0.0051 25.2 6.1 97 109-208 7-116 (141)
453 PRK11866 2-oxoacid ferredoxin 24.1 1E+02 0.0022 30.8 4.3 21 168-188 78-99 (279)
454 PRK03604 moaC bifunctional mol 24.0 2.8E+02 0.0061 28.2 7.4 76 114-189 161-243 (312)
455 PF02879 PGM_PMM_II: Phosphogl 23.9 2E+02 0.0043 23.5 5.5 78 94-177 2-94 (104)
456 cd01260 PH_CNK Connector enhan 23.7 76 0.0016 25.6 2.8 22 80-101 74-95 (96)
457 TIGR01470 cysG_Nterm siroheme 23.7 3.7E+02 0.008 25.3 7.8 70 110-188 10-91 (205)
458 PRK13525 glutamine amidotransf 23.5 4.4E+02 0.0095 24.4 8.2 52 110-181 2-53 (189)
459 PF00885 DMRL_synthase: 6,7-di 23.5 3.3E+02 0.007 24.3 7.0 79 109-189 3-94 (144)
460 cd00858 GlyRS_anticodon GlyRS 23.5 2.7E+02 0.0058 23.6 6.3 45 130-177 44-88 (121)
461 TIGR03018 pepcterm_TyrKin exop 23.4 6E+02 0.013 23.5 10.7 45 107-153 32-77 (207)
462 PHA02519 plasmid partition pro 23.4 2E+02 0.0044 30.1 6.5 68 88-157 83-152 (387)
463 cd06327 PBP1_SBP_like_1 Peripl 23.4 6.2E+02 0.013 25.0 10.0 77 109-189 135-213 (334)
464 TIGR01684 viral_ppase viral ph 23.2 1.9E+02 0.0042 29.2 5.9 46 132-177 153-198 (301)
465 PRK08622 galactose-6-phosphate 23.2 2.4E+02 0.0052 26.1 6.1 57 129-216 14-76 (171)
466 cd00885 cinA Competence-damage 23.1 2E+02 0.0044 26.3 5.8 47 131-178 22-70 (170)
467 cd06384 PBP1_NPR_B Ligand-bind 23.0 8E+02 0.017 25.2 11.0 58 131-189 166-225 (399)
468 PF02233 PNTB: NAD(P) transhyd 23.0 1.5E+02 0.0032 31.9 5.4 66 107-189 336-401 (463)
469 TIGR00689 rpiB_lacA_lacB sugar 22.9 2.6E+02 0.0055 25.1 6.1 57 129-216 12-74 (144)
470 cd01246 PH_oxysterol_bp Oxyste 22.8 84 0.0018 24.6 2.8 22 80-101 69-90 (91)
471 COG0337 AroB 3-dehydroquinate 22.8 2.7E+02 0.0058 28.9 7.0 85 108-205 32-128 (360)
472 PRK15473 cbiF cobalt-precorrin 22.7 2.3E+02 0.0051 27.6 6.5 48 165-215 79-127 (257)
473 PRK14167 bifunctional 5,10-met 22.7 5.6E+02 0.012 25.9 9.2 78 91-172 10-95 (297)
474 TIGR01481 ccpA catabolite cont 22.6 4.4E+02 0.0096 25.9 8.7 79 109-189 176-258 (329)
475 PF02016 Peptidase_S66: LD-car 22.5 83 0.0018 31.4 3.3 63 115-179 3-76 (284)
476 cd01252 PH_cytohesin Cytohesin 22.5 1.1E+02 0.0023 26.3 3.6 25 80-104 90-114 (125)
477 PRK08007 para-aminobenzoate sy 22.4 2E+02 0.0043 26.6 5.7 49 129-182 11-59 (187)
478 cd00860 ThrRS_anticodon ThrRS 22.3 3.3E+02 0.0072 21.1 6.3 45 131-177 18-62 (91)
479 cd06330 PBP1_Arsenic_SBP_like 22.3 4.1E+02 0.0089 26.4 8.5 78 108-189 137-218 (346)
480 TIGR01132 pgm phosphoglucomuta 22.2 3.7E+02 0.0081 29.4 8.6 51 91-147 206-257 (543)
481 PTZ00468 phosphofructokinase f 22.2 2.3E+02 0.005 34.4 7.1 103 109-213 134-241 (1328)
482 cd00738 HGTP_anticodon HGTP an 22.1 3.3E+02 0.0073 21.1 6.4 43 131-175 21-63 (94)
483 PRK13143 hisH imidazole glycer 22.1 4.7E+02 0.01 24.3 8.2 46 111-175 2-47 (200)
484 PF13377 Peripla_BP_3: Peripla 21.9 2E+02 0.0044 24.8 5.4 78 109-189 9-90 (160)
485 cd06338 PBP1_ABC_ligand_bindin 21.9 7.8E+02 0.017 24.3 12.4 77 109-189 141-219 (345)
486 TIGR00097 HMP-P_kinase phospho 21.7 2.2E+02 0.0047 27.5 6.1 26 204-229 202-227 (254)
487 COG0695 GrxC Glutaredoxin and 21.6 2.8E+02 0.0062 21.8 5.6 34 129-162 13-48 (80)
488 PRK12615 galactose-6-phosphate 21.5 2.8E+02 0.006 25.6 6.2 67 114-216 4-76 (171)
489 TIGR00557 pdxA 4-hydroxythreon 21.5 3E+02 0.0064 28.2 7.0 62 107-173 194-259 (320)
490 PRK14321 glmM phosphoglucosami 21.3 3.9E+02 0.0085 28.4 8.4 47 92-147 149-195 (449)
491 PRK08621 galactose-6-phosphate 21.3 2.9E+02 0.0064 24.7 6.1 67 114-216 4-74 (142)
492 TIGR01753 flav_short flavodoxi 21.3 3E+02 0.0065 23.3 6.4 66 113-188 2-75 (140)
493 COG0683 LivK ABC-type branched 21.2 8.8E+02 0.019 24.7 11.1 76 110-189 149-226 (366)
494 COG1393 ArsC Arsenate reductas 21.2 2.1E+02 0.0045 24.6 5.0 30 111-147 2-31 (117)
495 cd06382 PBP1_iGluR_Kainate N-t 21.1 7.2E+02 0.016 24.5 9.9 73 108-188 128-203 (327)
496 cd02071 MM_CoA_mut_B12_BD meth 21.1 3.2E+02 0.007 23.2 6.4 57 131-189 17-73 (122)
497 TIGR01119 lacB galactose-6-pho 21.1 3E+02 0.0066 25.4 6.3 57 129-216 14-76 (171)
498 cd06344 PBP1_ABC_ligand_bindin 21.0 8.1E+02 0.018 24.2 11.2 103 80-187 107-212 (332)
499 cd01741 GATase1_1 Subgroup of 21.0 1.6E+02 0.0036 26.9 4.8 42 132-179 15-59 (188)
500 TIGR01752 flav_long flavodoxin 21.0 2.5E+02 0.0055 25.3 6.0 83 112-206 2-87 (167)
No 1
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=100.00 E-value=5.7e-95 Score=766.96 Aligned_cols=479 Identities=73% Similarity=1.240 Sum_probs=432.3
Q ss_pred CCcccccceeeeEEEeceeEEEEEcCCCeEEEecCCcccceeeeeeeEEEEeCcEEEEEEeecCCCccccCCCCCceEEe
Q 011517 1 MDQIVQDTLSDRVRVSGRITAMTLTGDGRLRWTDGHQRSLTLEKQVLGFVVEGSKIRIRAVVDGRDEICCGGRAGSVVRK 80 (484)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (484)
|+..++.+++++|+|||..+++||+++|+|+|+++.+||+++++||||+.++|++++|++++++..+++|++++++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
T PLN02958 3 DELPSPAIISDRVLVNGVLTPLTLTAEGKLRWTDSGQRCLTVEKEVLGFVIEGSKIRVKTIVEKGGGICCRGSAGALARK 82 (481)
T ss_pred CcCCCCceeeeeEEECCEEeeEEeccCCEEEeecCCcceEEEeeeeeEEEEeCCEEEEEEEEecCCcccccCCCCCceee
Confidence 34556779999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHH
Q 011517 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (484)
+++|++.+.+.++.|+++|++++++.+||||++||+||.||++++.++|.++++|+|++++++++++.|++++||.++++
T Consensus 83 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~ 162 (481)
T PLN02958 83 DFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKEVVR 162 (481)
T ss_pred eEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeee
Q 011517 161 VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~l 240 (484)
+++..+||.|||+|||||+|||+|||+.+++|+.+.++|||+||+||||+||++|++..|+|.++..|+.+|++|+.+++
T Consensus 163 ~~~~~~~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~~~v 242 (481)
T PLN02958 163 TMDLSKYDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHKCSL 242 (481)
T ss_pred HhhhcCCCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCceEE
Confidence 99888999999999999999999999999888777889999999999999999997777899999999999999999999
Q ss_pred eEEEEEeCCeeEEEEEeeeeeeecccccccccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccC
Q 011517 241 DVATILQGKTRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQN 320 (484)
Q Consensus 241 Dl~~V~~~~~~~fs~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~ 320 (484)
|+++|+++++++|++++++|||+|||+.++|++||||++||.++++++++++|.|+++|+|+|+++.+.++.|.++....
T Consensus 243 Dlg~v~~~~~~~f~vn~~g~GfdAdV~~~se~kr~lG~lrY~~~~l~~l~~~r~y~~~I~~~~a~~~~~~~~~~~~~~~~ 322 (481)
T PLN02958 243 DVATILQGETKFFSVLMLAWGLVADIDIESEKYRWMGSARLDFYGLQRILCLRQYNGRISFVPAPGFEAYGEPTSYNGES 322 (481)
T ss_pred eEEEEEcCCceEEEEEeeeeehhhhhhcccccccccchHHHHHHHHHHHHhcCCcceEEEEEeccccccccccccccccc
Confidence 99999866567777888999999999999999999999999999999999999999999999998877777765543211
Q ss_pred cCCCCCCCCCcccccccccCCCccccCCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHH
Q 011517 321 ICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALF 400 (484)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll 400 (484)
.. ++.....+...++++..+....+|+.+++.|++++++|++|+|+++.++|+|+++||.|||++++++++++++
T Consensus 323 ~~-----~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~fl~v~v~N~~~~Ggg~~iaP~A~l~DG~LDlviv~~~s~~~lL 397 (481)
T PLN02958 323 TS-----KEESGKDKQHGYQGPDVKLENLDWRTIKGPFVSVWLHNVPWGGEDTLAAPDAKFSDGYLDLILIKDCPKLALL 397 (481)
T ss_pred cc-----cccccccccccccCCccccCCccceEeecceeEEeeccCcccCCCcccCCcccCCCCeEEEEEEcCCCHHHHH
Confidence 00 0000011112345555555556899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccccEEEEEecCcccc
Q 011517 401 SLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATL 480 (484)
Q Consensus 401 ~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~q~~v~~~l~~~ 480 (484)
++|+++.+|+|++.|+|+++++++++|++......+.+++.+++|||.++..|++++|.|++|++|+|+|++|||||+|+
T Consensus 398 ~~l~~~~~G~h~~~~~V~~~k~k~~~I~~~~~~~~~~~~~~i~iDGE~~~~~p~~i~v~~~al~~~~~~~~~~~~~~~~~ 477 (481)
T PLN02958 398 ALMTKLSDGTHVKSPYVMYLKVKAFVLEPGPRTDDPTKGGIIDSDGEVLARGNGSYKCDQKALMSYDKLQISVDQGLATL 477 (481)
T ss_pred HHHHHHhCCCccCCCceEEEEEEEEEEEECCcccCcCcCCeEEECCcccCCCCceeeeccccccccCceEEEEcCCceEe
Confidence 99999999999999999999999999998532212234578999999999999999999999999999999999999999
Q ss_pred ccCC
Q 011517 481 FSPV 484 (484)
Q Consensus 481 ~~~~ 484 (484)
|||+
T Consensus 478 ~~~~ 481 (481)
T PLN02958 478 FSPV 481 (481)
T ss_pred ecCC
Confidence 9995
No 2
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-69 Score=559.97 Aligned_cols=359 Identities=42% Similarity=0.709 Sum_probs=305.8
Q ss_pred hhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
..+.+|++|++||+||+||+|+|.++|+++|+|+|.+|+++++++.|++++||+|+++++++.+||+||||||||++|||
T Consensus 173 ~~~~~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~rt~dl~kyDgIv~vsGDGl~hEV 252 (579)
T KOG1116|consen 173 VDSLKRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIVRTLDLGKYDGIVCVSGDGLLHEV 252 (579)
T ss_pred ccccCCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHHHhhhccccceEEEecCCcCHHHh
Confidence 34668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCC-eeEEEEEeeeee
Q 011517 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGK-TRFHSVLMLAWG 261 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~-~~~fs~~~~~~G 261 (484)
+|||+.|+||+++.++|||+|||||||+||++++|..|. .-+..|+..|++|..+++|+.++.+.. +++|||++++||
T Consensus 253 lNGLl~R~D~~~~~klPigiiP~GSGNala~Sv~~~~~~-~~~~~a~l~iirg~~t~~dv~~v~~~~~~~~fSfLs~~wG 331 (579)
T KOG1116|consen 253 LNGLLERPDWEAAVKLPIGIIPCGSGNALAKSVLWTNGP-DLPLLATLLIIRGRLTPMDVSVVEYAGKDRHFSFLSAAWG 331 (579)
T ss_pred hhccccccchhhHhcCceeEeecCCccHHHHHhhcccCc-ccchHHHHHHHccCCCchheeehhhccCcceEEEEeeeee
Confidence 999999999999999999999999999999999887654 126788999999999999999998643 469999999999
Q ss_pred eecccccccccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCccc-----ccCcCCC-----------C
Q 011517 262 LVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYS-----EQNICNP-----------I 325 (484)
Q Consensus 262 ~~adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~-----~~~~~~~-----------~ 325 (484)
|+||+|++|||+||||++||+++++.+++++|+|+++|.|+|+...+..+.+..+. .+|.... .
T Consensus 332 lIADiDI~SEk~R~mG~~Rf~lg~~~rl~~lr~Y~gri~ylp~~~k~~~~~~~~~~~~~~~~~~~~~~a~~~~s~~~~~~ 411 (579)
T KOG1116|consen 332 LIADVDIESEKYRWMGPARFTLGAFLRLIQLRKYKGRIEYLPAKGKSAEPLPAHELEAADSEGCLSTHADTEPSEYPRLS 411 (579)
T ss_pred eEEecccchHHHHhhcchhhhHHHHHHHHhccCCCceEEEecccccccCcccchhhcccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999987665444332111 1111000 0
Q ss_pred CC------------CCCccc-ccccccCCC-ccccCCCceEEEee-cEEEEEEeecccCCCCCccCCCCccCCCeEEEEE
Q 011517 326 PS------------QQQPIK-ILQHGYQGP-DVDLKNLEWRIING-PFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLII 390 (484)
Q Consensus 326 ~~------------~~~~~~-~~~~~~~g~-~~~~~~~~w~~i~g-~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~ 390 (484)
+. .+.+.. .+....+-| -....+.+|..+.+ +|+.+.+.-.+|+|.++.++|.|.++||.|||++
T Consensus 412 ~~~~~~~~~~~s~~~e~s~~~~~~~~~~~p~~~~p~psdw~~~~~~d~~~~~a~~~sy~~~d~~~~P~A~~~dg~I~lv~ 491 (579)
T KOG1116|consen 412 VPKMSPKSVLRSPVSETSPVIPEDPLHLSPPLEEPLPSDWEVVPGVDFVCILAILLSYLGADMKFAPAARPDDGLIHLVI 491 (579)
T ss_pred ccccCccccccCcccccCcccCCccccCCCcccCCCCcceeeecCcceeeeehhhhhhccCCcccccccccCCCeEEEEE
Confidence 00 000000 000001111 11223467999998 9999998888999999999999999999999999
Q ss_pred Eec-CCHHHHHHHHHhhccCCCC--cCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccc
Q 011517 391 IKD-CPKLALFSLLSNLNKGGHV--ESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYD 467 (484)
Q Consensus 391 i~~-~s~~~ll~~l~~~~~G~~~--~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~ 467 (484)
++. .+|.+++++++++..|.|+ ..|+|.|+++++|+++|.. .++++++|||.+ .+.
T Consensus 492 ~~~~~~r~~ll~~llald~gsh~~~~~p~v~~~~vra~r~epv~------~~~~~~vDGE~~---------------~~e 550 (579)
T KOG1116|consen 492 VRAGGSRTQLLRLLLALDKGSHLHVECPFVKYVKVRAFRLEPVT------PSGYFAVDGELV---------------PLE 550 (579)
T ss_pred EccCCcHHHHHHHHHhhcccccccccCCceeEEEeEEEEEEEec------CCceEEecccEe---------------ecc
Confidence 995 6999999999999999996 8899999999999999974 358999999996 899
Q ss_pred cEEEEEecCccccccC
Q 011517 468 KLQITVDQGLATLFSP 483 (484)
Q Consensus 468 p~q~~v~~~l~~~~~~ 483 (484)
|+|++|+|+++++|++
T Consensus 551 p~q~~v~p~~i~~~s~ 566 (579)
T KOG1116|consen 551 PLQVQVLPGLILTLSG 566 (579)
T ss_pred ceeEEecccceeEEec
Confidence 9999999999999986
No 3
>PLN02204 diacylglycerol kinase
Probab=100.00 E-value=7.8e-66 Score=542.52 Aligned_cols=449 Identities=24% Similarity=0.384 Sum_probs=347.9
Q ss_pred ccceeeeEEEec-eeEEEEEcCCCeEEEec-CC-----cccc-----------eeeeeeeEEEEeCcEEEEEEeecCCCc
Q 011517 6 QDTLSDRVRVSG-RITAMTLTGDGRLRWTD-GH-----QRSL-----------TLEKQVLGFVVEGSKIRIRAVVDGRDE 67 (484)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~-~~-----~~~~-----------~~~~~vl~~~~~~~~~~~~~~~~~~~~ 67 (484)
.++|.+.+.+++ ..+.|||++|+++ |.+ .. ..|+ .-.+||+||+..+..+.+.|.....+.
T Consensus 18 ~~~~~~~~~~~~~~~v~lt~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~ 96 (601)
T PLN02204 18 RSVLSSCLFLDHVGDVSLTLNSDGLS-WKCLDSSDNDGTTCLGIKFCEKSETEIKFSDVYAVEFINYGLIHSPKLSHAKG 96 (601)
T ss_pred cccccceeeecccccEEEEEcCCceE-EecccccccCCceeeccccccCcccceeeeeeeEEeeccccceecccccccch
Confidence 446777776666 4688999888888 886 11 2221 113899999988777777665433222
Q ss_pred cc--------------------cCCCCCceEEeeEEeCCCCHHHHHHHHHHHHHhhh-hcCCCcEEEEEEcCCCCCcchh
Q 011517 68 IC--------------------CGGRAGSVVRKDFVFEPLSEDSKRLWCEKLRDFID-SFGRPKRLYIFVNPFGGKKIAS 126 (484)
Q Consensus 68 ~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~-~~~~~~r~lviiNP~sG~~~a~ 126 (484)
+. ....+-.|+...|+|.+.+...++.|.++|++.+. ...|||+++||+||.||++++.
T Consensus 97 ~~~~~~~~~~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~ 176 (601)
T PLN02204 97 CFRERLSETQEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQTCQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGS 176 (601)
T ss_pred hhhccccccccceeeEEEEeeecccCCCcceeEEEeecCCCHHHHHHHHHHHHHHHhhccCCCceEEEEECCCCCCcchH
Confidence 11 00112357889999999999999999999999987 4589999999999999999999
Q ss_pred hchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh---cCCCceEEEEcCCChHHHHHHHHhcCcC------------
Q 011517 127 KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLERED------------ 191 (484)
Q Consensus 127 ~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~---~~~~d~IV~vGGDGtl~evingL~~~~~------------ 191 (484)
+.|+ +++|+|+.++++++++.|++++||.++++++. +.+||+||+||||||+|||+|||+.+..
T Consensus 177 ~~~~-~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGGDGt~nEVlNGL~~~r~~~~~p~~~~~~~ 255 (601)
T PLN02204 177 RTWE-TVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGGDGFFNEILNGYLLSRLKVPYPPSPSDSV 255 (601)
T ss_pred HHHH-HHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcCccHHHHHHHHHhhhcccccccccccccc
Confidence 9996 89999999999999999999999999987654 6789999999999999999999984310
Q ss_pred -------------ccc------------------------------------------ccCCcEEEecCCCchhhhhhcc
Q 011517 192 -------------WND------------------------------------------AIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 192 -------------~~~------------------------------------------~~~~pigiIP~GSgN~~A~sl~ 216 (484)
+++ ..+++|||||+||||+||+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lGIIPaGSgN~~a~~~- 334 (601)
T PLN02204 256 HSVQSRGSSSVHEPNETVHECDNEDHSPLLSDSVQEVMNFRTENGSCEGDQDSDFPFPNERFRFGIIPAGSTDAIVMCT- 334 (601)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCceEEEECCccHHHHHHHc-
Confidence 000 135899999999999999998
Q ss_pred cccCCCCCHHHHHHHHHhCceeeeeEEEEEeCC---------eeEEEEEeeeeeeecccccccccccccCChhhHHHHHH
Q 011517 217 DLVGEPCKASNAILAVIRGHKRLLDVATILQGK---------TRFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQ 287 (484)
Q Consensus 217 ~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~---------~~~fs~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~ 287 (484)
..+.++.+|+++|+.|+.+++|+++|++++ ...|.++++++||+|+|..++|++||||++||.+++++
T Consensus 335 ---~g~~dp~taa~~Ii~G~~~~lDig~V~~~~~~~~~~~~~~~ryf~s~ag~Gf~gdVi~esek~R~mG~~rY~~~g~k 411 (601)
T PLN02204 335 ---TGERDPVTSALHIILGRRVCLDIAQVVRWKTTSTSEIEPYVRYAASFAGYGFYGDVISESEKYRWMGPKRYDYAGTK 411 (601)
T ss_pred ---cCCCCHHHHHHHHHhCCCeEeeEEEEecccccccccccccceEEEEEeecchHHHHHHHhhhhcccchHHHHHHHHH
Confidence 347799999999999999999999997522 11344678999999999999999999999999999999
Q ss_pred HHHhccccceEEEEecCCCCC--CCC-CCCcc------cccCcCCCCCCCCCcccccccccCCCccccCCCceEEEeecE
Q 011517 288 RILYLRQYNGRVSFVPAPGFE--NHG-EPSTY------SEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPF 358 (484)
Q Consensus 288 ~l~~~r~y~~~is~~p~~~~~--~~~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f 358 (484)
.+++.|.|+++|+|.+..... +.. .|..+ ...|..++.+|....... ..+..|.......+|.+..|.|
T Consensus 412 ~~~~~r~y~~~V~~d~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~c~Vcn~~~~~~--~~~~~p~~~~~~~~W~~~~G~f 489 (601)
T PLN02204 412 VFLKHRSYEAEVAYLETESEKSKASSEARKRTGPKKSEKIVCRTNCSVCNTKVSTN--SPSTTPNSCPEETRWLRSKGRF 489 (601)
T ss_pred HHHhCCCceEEEEECCeEeeecccccccccccccccccchhhhhheeeeccccccc--ccccccccccccccceeecCce
Confidence 999999999999998653211 000 00000 011222344443221000 0112222233457899999999
Q ss_pred EEEEEeecccCCCCC--ccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhc-c-CCCCcCCcEEEEEEEEEEEEeCCCCC
Q 011517 359 VAVWLHNVPWGSENT--MAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLN-K-GGHVESPYVAYLKVKAFILEPGALTQ 434 (484)
Q Consensus 359 ~~v~~~N~~~~g~~~--~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~-~-G~~~~~p~V~~~kv~a~~i~~~~~~~ 434 (484)
.++.++++++.++.. .++|+|+++||.|||+++++++++++|++|..+. + |+|+++|+|+|+++++|+|++..
T Consensus 490 ~~vG~~iis~~~~rap~gl~pdA~l~DG~LDLilVr~~s~~~~L~~L~~l~~~gG~~l~~~~Ve~~ktk~f~~~s~~--- 566 (601)
T PLN02204 490 LSVGAAIISNRNERAPDGLVADAHLSDGFLHLILIKDCPHPLYLWHLTQLAKRGGEPLNFEFVEHHKTPAFTFTSFG--- 566 (601)
T ss_pred EEeeeecccccccccccccCCCCcCCCCeEEEEEECCCCHHHHHHHHHHHHhhcCccCCCCcEEEEEeeEEEEEECC---
Confidence 999988888877666 4899999999999999999999999999998876 3 68999999999999999999753
Q ss_pred CCCCCceEEecCCccccCCceeeecCCcccccccEEEEEecCccccccC
Q 011517 435 EPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQITVDQGLATLFSP 483 (484)
Q Consensus 435 ~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~q~~v~~~l~~~~~~ 483 (484)
.+..|++|||+++. .|++++|++++++||++
T Consensus 567 ---~~~~~niDGE~~~~---------------~~v~v~V~~~al~lfa~ 597 (601)
T PLN02204 567 ---DESVWNLDGEIFQA---------------HQLSAQVFRGLVNLFAS 597 (601)
T ss_pred ---CCceEEeCCCcCCC---------------ccEEEEEEcCeeEEEec
Confidence 34679999999743 36777888888877763
No 4
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-63 Score=485.51 Aligned_cols=366 Identities=28% Similarity=0.440 Sum_probs=315.7
Q ss_pred CCceEEeeEEeCCCCHHHHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh
Q 011517 74 AGSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (484)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~-~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~ 152 (484)
+.+|+...++|.+.+.++++.|.+.|+..|... .|||.++|||||++|+|+++++|+. |.++|-.+.+.++|+.||++
T Consensus 122 k~~W~laq~tf~~~~~q~c~~W~~~l~~~L~k~~~RPknllvFinPfgGkG~g~ki~e~-V~~~F~la~v~tkvivTErA 200 (516)
T KOG1115|consen 122 KELWNLAQFTFGHMDLQTCQSWMDQLNYSLIKEVERPKNLLVFINPFGGKGNGSKIWET-VSKIFILAKVNTKVIVTERA 200 (516)
T ss_pred hhhcchhcceEecccHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCCCCcccchhhh-hhhhEEeeecceeEEEEccc
Confidence 457888999999999999999999999987654 8999999999999999999999975 99999999999999999999
Q ss_pred hHHHHHHHHhh---cCCCceEEEEcCCChHHHHHHHHhcCcCcccc------------cCCcEEEecCCCchhhhhhccc
Q 011517 153 LHAKEIVKVLD---LSKYDGIVCVSGDGILVEVVNGLLEREDWNDA------------IKVPLGVVPAGTGNGMIKSLLD 217 (484)
Q Consensus 153 ~~a~~l~~~~~---~~~~d~IV~vGGDGtl~evingL~~~~~~~~~------------~~~pigiIP~GSgN~~A~sl~~ 217 (484)
+||.+.+.++. +..||+||+|||||.+||++||++.|.+..+. .++.+||||+||+|++..+..
T Consensus 201 nhA~d~~~ei~~~~~~~yDGiv~VGGDG~FnEiL~G~llrtQ~~ag~~i~~P~~~lv~~~~RfGiIpAGStd~iv~~t~- 279 (516)
T KOG1115|consen 201 NHAFDVMAEIQNKELHTYDGIVAVGGDGFFNEILNGYLLRTQEVAGFRIEDPDHPLVSERPRFGIIPAGSTDAIVMCTT- 279 (516)
T ss_pred cchhhhhhhCCHhhhhhcccEEEecCchhHHHHHhhhhhhhhhhcCcccCCCCCcccCCCceeeeecCCCcCeEEEEec-
Confidence 99999998887 67899999999999999999999988654321 258899999999999999874
Q ss_pred ccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCe-eEEEEEeeeeeeecccccccccccccCChhhHHHHHHHHHhccccc
Q 011517 218 LVGEPCKASNAILAVIRGHKRLLDVATILQGKT-RFHSVLMLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYN 296 (484)
Q Consensus 218 ~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~-~~fs~~~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~ 296 (484)
| ..|+.+.+.+|+-|+..-+|+++|++.++ .+|+++.++|||++|+..+||||||||+.||++.++++++++|.|+
T Consensus 280 --g-t~D~~TSAlHI~lG~~l~vDVctVht~~kLiRysaSa~gYGFyGDvl~dSEKYRWmGp~RYDfsglKtflkH~~Ye 356 (516)
T KOG1115|consen 280 --G-TRDPVTSALHIILGRKLFVDVCTVHTIEKLIRYSASAAGYGFYGDVLSDSEKYRWMGPKRYDFSGLKTFLKHRSYE 356 (516)
T ss_pred --c-CCccccceeeeEeccceeeeeeeeeecchheeeehhhhcccccchhhhhhhhhhccCchhhhhHHHHHHHhccccc
Confidence 3 34666777999999999999999986543 5799999999999999999999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccccCCCceEEEeecEEEEEEeecccCCCCC--c
Q 011517 297 GRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENT--M 374 (484)
Q Consensus 297 ~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~--~ 374 (484)
|.|+|+|+.... .|++.. ..|.+.....+.|+.+.|+|..|.++++|+.+... .
T Consensus 357 geVsFlpa~sen-----------------~~qe~~-------~~g~~~~~~~k~Wq~~~g~Fl~V~c~aipciC~~~PrG 412 (516)
T KOG1115|consen 357 GEVSFLPAESEN-----------------PCQEPC-------PSGASLHTRSKTWQRNTGRFLKVLCRAIPCICNSKPRG 412 (516)
T ss_pred eEEEecccccCC-----------------chhccc-------cccCCcccCcchhhhhhhheeeeeEeeccccccCCCCC
Confidence 999999974321 111110 01112223457899999999999999999999876 5
Q ss_pred cCCCCccCCCeEEEEEEecCCHHHHHHHHHhh-ccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCC
Q 011517 375 AAPDAKFSDGYLDLIIIKDCPKLALFSLLSNL-NKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGK 453 (484)
Q Consensus 375 ~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~-~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~ 453 (484)
++|.++++||.+||++++.+||+.++++|.+. ..++++++++|+.+.++.|...+..+..+..+...|++|||++...
T Consensus 413 LaP~T~LndGs~dLil~R~~SRF~fi~fl~r~a~~~~qfdf~fVe~y~v~~v~~~s~~~d~~~~d~~eWN~DGeile~p- 491 (516)
T KOG1115|consen 413 LAPSTTLNDGSEDLILCRTKSRFLFIGFLVRSARNERQFDFLFVEAYLVDGVLHLSLIKDCSRPDYLEWNLDGEILEQP- 491 (516)
T ss_pred cCCccccCCCccceeeeecccchHHHHHHHHHhhcccccCceeeeeeeeeeEEEEeecCCCCCCCcceeccCcchhcCC-
Confidence 89999999999999999999999999999765 5688999999999999999999887766666678899999997522
Q ss_pred ceeeecCCcccccccEEEEEecCcccccc
Q 011517 454 GTYQCDQKSLMSYDKLQITVDQGLATLFS 482 (484)
Q Consensus 454 ~~~~~~~~~l~~~~p~q~~v~~~l~~~~~ 482 (484)
.|+..++||.|+.+|.
T Consensus 492 -------------~~lh~rlHpqLIslfg 507 (516)
T KOG1115|consen 492 -------------KPLHFRLHPQLISLFG 507 (516)
T ss_pred -------------cceEEEechhhHhHhc
Confidence 2788888888888886
No 5
>PRK11914 diacylglycerol kinase; Reviewed
Probab=100.00 E-value=1.2e-51 Score=416.04 Aligned_cols=292 Identities=21% Similarity=0.303 Sum_probs=257.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
++|+++|+||.||++++.+.|. ++.+.|++++++++++.|++++|+.++++++...++|.||++|||||+|||+|+|+.
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~-~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDGTi~evv~~l~~ 86 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAE-RAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDGVISNALQVLAG 86 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHH-HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHhHHhcc
Confidence 5899999999999999988885 778899999999999999999999999999877889999999999999999999976
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCC-CHHHHHHHHHhCceeeeeEEEEEeC--CeeEEEEEeeeeeeecc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQG--KTRFHSVLMLAWGLVAD 265 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~-~~~~A~~~i~~g~~~~lDl~~V~~~--~~~~fs~~~~~~G~~ad 265 (484)
. ++|||+||+||+|+||++| |+|. +++.|+..|..|+.+++|+++|+.. +.++|. +++++||+|+
T Consensus 87 ~-------~~~lgiiP~GT~NdfAr~l----g~~~~~~~~a~~~i~~g~~~~iDlg~v~~~~~~~~~f~-n~~~~G~~a~ 154 (306)
T PRK11914 87 T-------DIPLGIIPAGTGNDHAREF----GIPTGDPEAAADVIVDGWTETVDLGRIQDDDGIVKWFG-TVAATGFDSL 154 (306)
T ss_pred C-------CCcEEEEeCCCcchhHHHc----CCCCCCHHHHHHHHHcCCceEEEEEEEecCCCCcEEEE-EEEeeehHHH
Confidence 4 6899999999999999999 8885 7999999999999999999999853 236674 5799999999
Q ss_pred cccccccccc-cCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 011517 266 IDIESEKYRW-MGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (484)
Q Consensus 266 v~~~sek~R~-~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (484)
+...+++.|| +|+++|.+++++.+.+.+.|+.+|.+
T Consensus 155 v~~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~------------------------------------------- 191 (306)
T PRK11914 155 VTDRANRMRWPHGRMRYNLAMLAELSKLRPLPFRLVL------------------------------------------- 191 (306)
T ss_pred HHHHHHhccccCCchhhHHHHHHHHHhcCCCcEEEEE-------------------------------------------
Confidence 9888887777 79999999999999988888777753
Q ss_pred ccCCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEE
Q 011517 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKA 424 (484)
Q Consensus 345 ~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a 424 (484)
++++.+++++.++.++|++++|+++.++|.|.++||.||++++++.+++++++++..+..|+|.+.|.|+++++++
T Consensus 192 ----dg~~~~~~~~~~~~v~N~~~~GG~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~ 267 (306)
T PRK11914 192 ----DGTEEIVTDLTLAAFGNTRSYGGGMLICPNADHTDGLLDITMVQSASRTRLLRLFPTVFKGTHVELDEVSTARAKT 267 (306)
T ss_pred ----eCCeEEEeeEEEEEEeCcccccCCceeCCCCcCCCCcEEEEEEecCCHHHHHHHHHHhcCCcccCCCcEEEEEeEE
Confidence 1122345678888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 425 FILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
++|+.. +..+++|||..+..|+++++.|++|.++.|
T Consensus 268 i~i~~~--------~~~~~~DGE~~~~~p~~i~v~p~al~v~vp 303 (306)
T PRK11914 268 VHVECP--------GINAYADGDFACPLPAEISAVPGALQILRP 303 (306)
T ss_pred EEEEcC--------CcceecCCCcCCCCceEEEEEcCeEEEECC
Confidence 999863 236899999987677777777777777665
No 6
>PRK13337 putative lipid kinase; Reviewed
Probab=100.00 E-value=6.7e-50 Score=402.85 Aligned_cols=290 Identities=24% Similarity=0.367 Sum_probs=258.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+|+++|+||.||++++.+.|. ++.+.|++++++++++.|++.+|+.++++++...++|.||++|||||+|||+|+|+.+
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~-~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~ 80 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLP-DVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEK 80 (304)
T ss_pred ceEEEEECCcccchhHHHHHH-HHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhC
Confidence 689999999999999877784 7888999999999999999999999999998777899999999999999999999876
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeecccccc
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIE 269 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~~ 269 (484)
.+ ++|||+||+||+|+||+++ |+|.++.+|+..|..|..+++|++++++ ++| ++++++|+++++..+
T Consensus 81 ~~-----~~~lgiiP~GT~NdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~vn~---~~f-ln~~g~G~~a~v~~~ 147 (304)
T PRK13337 81 EN-----RPKLGIIPVGTTNDFARAL----HVPRDIEKAADVIIEGHTVPVDIGKANN---RYF-INIAGGGRLTELTYE 147 (304)
T ss_pred CC-----CCcEEEECCcCHhHHHHHc----CCCCCHHHHHHHHHcCCeEEEEEEEECC---EEE-EeeehhhHHHHHHHh
Confidence 32 5799999999999999999 8899999999999999999999999973 666 568999999999865
Q ss_pred c--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccccC
Q 011517 270 S--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLK 347 (484)
Q Consensus 270 s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 347 (484)
. +.++++|.+.|.+.+++.+.+.+.|+.++..
T Consensus 148 ~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~---------------------------------------------- 181 (304)
T PRK13337 148 VPSKLKTMLGQLAYYLKGIEMLPSLKATDVRIEY---------------------------------------------- 181 (304)
T ss_pred cCHHHhcCcccHHHHHHHHHHHhhCCCceEEEEE----------------------------------------------
Confidence 3 3456789999999999888887777666531
Q ss_pred CCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEE
Q 011517 348 NLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFIL 427 (484)
Q Consensus 348 ~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i 427 (484)
+++.++.++.+++++|.+++|+++.++|.|.++||.||++++++.+++++++++..+..|+|.+.|.|+++++++++|
T Consensus 182 --d~~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i 259 (304)
T PRK13337 182 --DGKLFQGEIMLFLLGLTNSVGGFEKLAPDASLDDGYFDLIIVKKANLAELIHIATLALRGEHIKHPKVIYTKANRIKV 259 (304)
T ss_pred --CCeEEEeEEEEEEEEcCcccCCccccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCcCCCCcEEEEEccEEEE
Confidence 112345577788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 428 EPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 428 ~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
++. ++..+++|||+++..|+++++.|++|+++.|
T Consensus 260 ~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~v~~p 293 (304)
T PRK13337 260 SSF-------DKMQLNLDGEYGGKLPAEFENLYRHIEVFVP 293 (304)
T ss_pred EcC-------CCCeEEeCCCcCCCCCEEEEEecceEEEEec
Confidence 975 3467999999999889999999999999987
No 7
>PRK13059 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.6e-49 Score=398.26 Aligned_cols=288 Identities=23% Similarity=0.338 Sum_probs=248.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+++++|+||.||++++.+.|+ ++++.|+++|+++.++.|+...++ +.+++....++|.||++|||||+|||+|+|++.
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~-~i~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~d~vi~~GGDGTv~evv~gl~~~ 79 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELD-KVIRIHQEKGYLVVPYRISLEYDL-KNAFKDIDESYKYILIAGGDGTVDNVVNAMKKL 79 (295)
T ss_pred cEEEEEECCcccchhHHHHHH-HHHHHHHHCCcEEEEEEccCcchH-HHHHHHhhcCCCEEEEECCccHHHHHHHHHHhc
Confidence 689999999999999877784 789999999999988888776654 555565557899999999999999999999965
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeecccccc
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIE 269 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~~ 269 (484)
. .++|||+||+||+|+||++| |+|.++.+|+..|..|+.+++|++++++ ++| ++++++||+|++...
T Consensus 80 ~-----~~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~vDlg~v~~---~~f-~n~~~~G~~a~v~~~ 146 (295)
T PRK13059 80 N-----IDLPIGILPVGTANDFAKFL----GMPTDIGEACEQILKSKPKKVDLGKIND---KYF-INVASTGLFTDVSQK 146 (295)
T ss_pred C-----CCCcEEEECCCCHhHHHHHh----CCCCCHHHHHHHHHhCCcEEeeEEEECC---EEE-EEEEeeeechhhhhh
Confidence 2 26899999999999999999 8899999999999999999999999973 566 568999999999987
Q ss_pred c--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccccC
Q 011517 270 S--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLK 347 (484)
Q Consensus 270 s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 347 (484)
. ++++++|.++|.+.+++.+++.+.|+.++..
T Consensus 147 ~~~~~k~~~G~~aY~~~~~~~l~~~~~~~~~i~~---------------------------------------------- 180 (295)
T PRK13059 147 TDVNLKNTIGKLAYYLKGLEELPNFRKLKVKVTS---------------------------------------------- 180 (295)
T ss_pred ccHHHhhCcchHHHHHHHHHHHhcCCCeeEEEEE----------------------------------------------
Confidence 5 3456789999999999999888877766642
Q ss_pred CCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCc-EEEEEEEEEE
Q 011517 348 NLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPY-VAYLKVKAFI 426 (484)
Q Consensus 348 ~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~-V~~~kv~a~~ 426 (484)
+++.+++++.++.++|.+|+|+ +.++|+|.++||.||++++++.+++++++++..+..|+|...|. |+++++++++
T Consensus 181 --d~~~~~~~~~~~~v~N~~~~Gg-~~~~p~a~~~DG~Ldv~i~~~~~~~~~l~~~~~~~~G~~~~~~~~v~~~~~~~i~ 257 (295)
T PRK13059 181 --EEVNFDGDMYLMLVFNGQTAGN-FNLAYKAEVDDGLLDVIIIKACPIIDLIPLFIKVLKGEHLEDVNGLIYFKTDKLE 257 (295)
T ss_pred --CCEEEEeeEEEEEEEcCccccC-cccCCcccCCCCeEEEEEEcCCCHHHHHHHHHHHHcCCccCCCccEEEEEeeEEE
Confidence 0124456777888999999984 79999999999999999999999999999999999999999998 9999999999
Q ss_pred EEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 427 LEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 427 i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
|++. ++..+++|||+.+..|+++++.|++|.++.|
T Consensus 258 i~~~-------~~~~~~~DGE~~~~~p~~i~v~p~al~v~~p 292 (295)
T PRK13059 258 IESN-------EEIVTDIDGERGPDFPLNIECIKGGLKVLGI 292 (295)
T ss_pred EEeC-------CCceEEeCCCcCCCCcEEEEEecCeeEEEec
Confidence 9975 3467999999988778888888888877776
No 8
>PRK13055 putative lipid kinase; Reviewed
Probab=100.00 E-value=3.8e-49 Score=402.00 Aligned_cols=296 Identities=22% Similarity=0.351 Sum_probs=257.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
.+|++||+||.||++++.+.| .++++.|++++++++++.|+ ..+|+.++++++...++|.||++|||||+|||+|+|+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~~~-~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGTl~evvngl~ 80 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKKNV-ADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGTINEVVNGIA 80 (334)
T ss_pred CceEEEEECCCCCchhHHHHH-HHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCHHHHHHHHHh
Confidence 478999999999999988888 58999999999999987666 6689999999887778999999999999999999998
Q ss_pred cCcCcccccCCcEEEecCCCchhhhhhcccccCCCC-CHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccc
Q 011517 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~-~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv 266 (484)
... ..+|||+||+||+|+||++| ++|. ++.+|+..|.+|+.+++|++.+++ .++| ++++++|++|++
T Consensus 81 ~~~-----~~~~LgiiP~GTgNdfAr~L----gi~~~~~~~a~~~l~~g~~~~vD~g~v~~--~~~F-~n~ag~G~da~v 148 (334)
T PRK13055 81 PLE-----KRPKMAIIPAGTTNDYARAL----KIPRDNPVEAAKVILKNQTIKMDIGRANE--DKYF-INIAAGGSLTEL 148 (334)
T ss_pred hcC-----CCCcEEEECCCchhHHHHHc----CCCCcCHHHHHHHHHcCCcEEeeEEEECC--CcEE-EEEehhccchHH
Confidence 653 25899999999999999999 8898 799999999999999999999963 3666 567999999999
Q ss_pred cccc--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 011517 267 DIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (484)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (484)
.... ..++++|+++|.+.+++.+.+.+.|+.+|++ ++
T Consensus 149 ~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~~~i~~--------------------------------------d~--- 187 (334)
T PRK13055 149 TYSVPSQLKSMFGYLAYLAKGAELLPRVSPVPVRITY--------------------------------------DE--- 187 (334)
T ss_pred HHhcCHHHHhhccHHHHHHHHHHHHHhcCCeeEEEEE--------------------------------------CC---
Confidence 8643 3345789999999999999888888777652 01
Q ss_pred ccCCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhcc-CCCCcCCcEEEEEEE
Q 011517 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNK-GGHVESPYVAYLKVK 423 (484)
Q Consensus 345 ~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~-G~~~~~p~V~~~kv~ 423 (484)
...++++.+++++|.+++|+++.++|+|.++||.||++++++.+++++++++..+.. |+|.+.|.|++++++
T Consensus 188 -------~~~~~~~~~~~v~n~~~~Gg~~~~~p~a~~~DG~ldv~i~~~~~~~~~l~~~~~~~~~G~~~~~~~v~~~~~~ 260 (334)
T PRK13055 188 -------GVFEGKISMFFLALTNSVGGFEQIVPDAKLDDGKFTLIIVKTANLFELLHLMALILNGGKHIDDPRVIYIKTS 260 (334)
T ss_pred -------EEEEEEEEEEEEEcCcccCCccccCCCCcCCCceEEEEEEcCCCHHHHHHHHHHHHhCCCCCCCCcEEEEEcc
Confidence 123456777889999999999999999999999999999999999999999999998 999999999999999
Q ss_pred EEEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccccEE
Q 011517 424 AFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQ 470 (484)
Q Consensus 424 a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~q 470 (484)
+++|++.. .++..+++|||+++..|+++++.|++|.++.|-+
T Consensus 261 ~i~I~~~~-----~~~~~~~iDGE~~~~~pv~i~v~p~al~v~~p~~ 302 (334)
T PRK13055 261 KLTIEPLG-----DDRLMVNLDGEYGGDAPMTFENLKQHIEFFANTD 302 (334)
T ss_pred EEEEEeCC-----CCcceEeeCCCcCCCCcEEEEEEcCeEEEEeCcc
Confidence 99999752 1346899999999888999999999999998733
No 9
>PRK13057 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.6e-48 Score=389.76 Aligned_cols=282 Identities=23% Similarity=0.325 Sum_probs=246.2
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCc
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDW 192 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~ 192 (484)
++|+||.||+++ +.+ +++++.|+++|+++.+..|++.+|+.++++++. .++|.||++|||||+|||+|+|+..
T Consensus 1 ~~I~Np~sg~~~--~~~-~~i~~~l~~~g~~~~~~~t~~~~~a~~~~~~~~-~~~d~iiv~GGDGTv~~v~~~l~~~--- 73 (287)
T PRK13057 1 LLLVNRHARSGR--AAL-AAARAALEAAGLELVEPPAEDPDDLSEVIEAYA-DGVDLVIVGGGDGTLNAAAPALVET--- 73 (287)
T ss_pred CEEECCCCCCcc--hhH-HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHH-cCCCEEEEECchHHHHHHHHHHhcC---
Confidence 489999999887 346 589999999999999999999999999999854 6799999999999999999999865
Q ss_pred ccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeecccccc--c
Q 011517 193 NDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIE--S 270 (484)
Q Consensus 193 ~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~~--s 270 (484)
++|||+||+||+|+||++| |+|.++.+|+..|..|+.+++|++++++ ++| ++++++|++|++... .
T Consensus 74 ----~~~lgiiP~GT~Ndfar~L----g~~~~~~~a~~~i~~~~~~~vD~g~~~~---~~f-~n~~g~G~da~v~~~~~~ 141 (287)
T PRK13057 74 ----GLPLGILPLGTANDLARTL----GIPLDLEAAARVIATGQVRRIDLGWVNG---HYF-FNVASLGLSAELARRLTK 141 (287)
T ss_pred ----CCcEEEECCCCccHHHHHc----CCCCCHHHHHHHHHcCCeEEeeEEEECC---EEE-EEEEecCccHHHHHHhhH
Confidence 6899999999999999999 8888999999999999999999999963 566 467999999999865 3
Q ss_pred ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccccCCCc
Q 011517 271 EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLE 350 (484)
Q Consensus 271 ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 350 (484)
++++.+|+++|.+.+++.+.+.+.|+.+++. ++
T Consensus 142 ~~k~~~G~~aY~~~~~~~l~~~~~~~~~l~~--------------------------------------d~--------- 174 (287)
T PRK13057 142 ELKRRWGTLGYAIAALRVLRRSRPFTAEIEH--------------------------------------DG--------- 174 (287)
T ss_pred HhhccCChhHHHHHHHHHHhhCCCeEEEEEE--------------------------------------CC---------
Confidence 3445679999999999999888777666531 01
Q ss_pred eEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEEeC
Q 011517 351 WRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPG 430 (484)
Q Consensus 351 w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~ 430 (484)
+..+.++.++.++|.+|+|+++.++|+|.++||.||+++++..++++++.++..+..|+|.+.+.|.++++++++|++.
T Consensus 175 -~~~~~~~~~~~v~N~~~~gg~~~~~p~a~~~DG~ldv~~v~~~~~~~~l~~~~~~~~g~~~~~~~v~~~~~~~~~i~~~ 253 (287)
T PRK13057 175 -RTERVKTLQVAVGNGRYYGGGMTVAHDATIDDGRLDLYSLEVAHWWRLLALLPALRRGRHGEWPDVRAFRTTELELRTR 253 (287)
T ss_pred -EEEEEEEEEEEEecCcccCCCcccCCCCCCCCceEEEEEecCCCHHHHHHHHHHHhcCCccCCCcEEEEEeeEEEEEeC
Confidence 2234567778899999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 431 ALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 431 ~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
+ +..+++|||..+..|+++++.|++|.++.|
T Consensus 254 ~-------~~~~~~DGE~~~~~p~~i~v~p~al~v~~p 284 (287)
T PRK13057 254 K-------PRPINTDGELTTYTPAHFRVLPKALRVLAP 284 (287)
T ss_pred C-------CcEEeeCCccCCCCCEEEEEECCeEEEEcC
Confidence 3 467999999998778888888888877775
No 10
>PRK00861 putative lipid kinase; Reviewed
Probab=100.00 E-value=1.9e-48 Score=391.68 Aligned_cols=291 Identities=23% Similarity=0.320 Sum_probs=247.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.+++++|+||.||++++.+.| +++++.|++. ++++++.|++.+|+.++++++..+++|.||++|||||+|||+|+|+.
T Consensus 2 ~~~~~iI~NP~sG~~~~~~~~-~~i~~~l~~~-~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTl~evv~~l~~ 79 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEVDL-ALIRAILEPE-MDLDIYLTTPEIGADQLAQEAIERGAELIIASGGDGTLSAVAGALIG 79 (300)
T ss_pred CceEEEEECCCCCCCchhhhH-HHHHHHHHhc-CceEEEEccCCCCHHHHHHHHHhcCCCEEEEECChHHHHHHHHHHhc
Confidence 368999999999999988777 5888889874 89999999999999999999877889999999999999999999986
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccccc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~ 268 (484)
. ++|||+||+||+|+||++| |+|.++..|+..|..|+.+++|++.++. ++| ++++++||+|++..
T Consensus 80 ~-------~~~lgviP~GTgNdfAr~l----gi~~~~~~a~~~i~~g~~~~iDlg~vn~---~~f-in~a~~G~~a~v~~ 144 (300)
T PRK00861 80 T-------DIPLGIIPRGTANAFAAAL----GIPDTIEEACRTILQGKTRRVDVAYCNG---QPM-ILLAGIGFEAETVE 144 (300)
T ss_pred C-------CCcEEEEcCCchhHHHHHc----CCCCCHHHHHHHHHcCCcEEeeEEEECC---EEE-EEEEeccHHHHHHH
Confidence 5 5899999999999999999 8899999999999999999999999973 566 45799999999997
Q ss_pred ccc--cccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccc
Q 011517 269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (484)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (484)
..+ +++++|.++|.+.+++.+++.+.|+.+|.. +|
T Consensus 145 ~~~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~--------------------------------------dg----- 181 (300)
T PRK00861 145 EADREAKNRFGILAYILSGLQQLRELESFEVEIET--------------------------------------ED----- 181 (300)
T ss_pred HhhHHHHhcccHHHHHHHHHHHhccCCCeeEEEEE--------------------------------------CC-----
Confidence 653 456789999999999999888888777642 01
Q ss_pred CCCceEEEeecEEEEEEeecccCCCCC-ccCCCCccCCCeEEEEEEecCCHHHHHH----HHHhhccCCCCcCCcEEEEE
Q 011517 347 KNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCPKLALFS----LLSNLNKGGHVESPYVAYLK 421 (484)
Q Consensus 347 ~~~~w~~i~g~f~~v~~~N~~~~g~~~-~~aP~a~~~DG~ldlv~i~~~s~~~ll~----~l~~~~~G~~~~~p~V~~~k 421 (484)
+.++.+..++.++|.++++..+ .-+|+|.++||.||++++++.+++++++ ++..+..|+|.+.+.|++++
T Consensus 182 -----~~~~~~~~~i~v~N~~~~~~~~~~g~p~a~~~DG~ldv~iv~~~~~~~~l~~~~~l~~~~~~g~~~~~~~v~~~~ 256 (300)
T PRK00861 182 -----QIITTNAVAVTVANAAPPTSVLAQGPGAVIPDDGLLDVTIVAPKNLAEAVAASYHLLQTALQGNPAERDDIGYLR 256 (300)
T ss_pred -----eEEEEEEEEEEEECCCCcccccccCCCCCCCCCceEEEEEEcCCCHHHHHHHHHHHHHHHhcCCCCCCCceEEEE
Confidence 1234466678899998654332 1268999999999999999999999985 44556789999999999999
Q ss_pred EEEEEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccccEEE
Q 011517 422 VKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKLQI 471 (484)
Q Consensus 422 v~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~q~ 471 (484)
+++++|++.+ +..+++|||+.+..|+++++.|++|.++.|-++
T Consensus 257 ~~~i~I~~~~-------~~~~~~DGE~~~~~p~~i~v~p~al~v~~p~~~ 299 (300)
T PRK00861 257 AKQVKITTDP-------PQKVVIDGEVVGTTPIEIECLPRSLKVFAPLQA 299 (300)
T ss_pred ccEEEEEeCC-------CeEEEECCccCCCceEEEEEECCEEEEEeCCCC
Confidence 9999999753 568999999998788888888888888877554
No 11
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=100.00 E-value=2.2e-47 Score=382.39 Aligned_cols=292 Identities=29% Similarity=0.444 Sum_probs=260.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+.+++.+|+||.||++++.+.| +++++.|+.++.++.++.|+..+||.++++++...+||.||++|||||+|||+|||+
T Consensus 1 ~~~~~~~i~Np~sG~~~~~~~~-~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~ 79 (301)
T COG1597 1 RMKKALLIYNPTSGKGKAKKLL-REVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLA 79 (301)
T ss_pred CCceEEEEEcccccccchhhHH-HHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHh
Confidence 3578999999999999999877 599999999999999999999999999999999889999999999999999999999
Q ss_pred cCcCcccccCCcEEEecCCCchhhhhhcccccCCCCC-HHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccc
Q 011517 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK-ASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~-~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv 266 (484)
.++. .|||+||+||+|+||++| |+|.+ +..|+..|..|+.+.+|++.++. +++| ++++++|++|++
T Consensus 80 ~~~~------~~LgilP~GT~NdfAr~L----gip~~~~~~Al~~i~~g~~~~vDlg~~~~--~~~f-in~a~~G~~a~~ 146 (301)
T COG1597 80 GTDD------PPLGILPGGTANDFARAL----GIPLDDIEAALELIKSGETRKVDLGQVNG--RRYF-INNAGIGFDAEV 146 (301)
T ss_pred cCCC------CceEEecCCchHHHHHHc----CCCchhHHHHHHHHHcCCeEEEeehhcCC--cceE-EEEeecchhHHH
Confidence 9852 239999999999999999 89995 99999999999999999997763 2355 568999999999
Q ss_pred cccccccccc--CChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 011517 267 DIESEKYRWM--GSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (484)
Q Consensus 267 ~~~sek~R~~--G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (484)
+.+.+..+|+ |.++|.+.++..+..++.++.+|.|- +
T Consensus 147 ~~~~~~~~k~~~g~~~y~~~~~~~l~~~~~~~~~i~~d--------------------------------------~--- 185 (301)
T COG1597 147 VAAVEEERKKGFGRLAYALAGLAVLARLKPFRIEIEYD--------------------------------------G--- 185 (301)
T ss_pred HHhhcHHHHhccchHHHHHHHHHhccccCCCcEEEEEc--------------------------------------C---
Confidence 9988776665 89999999999888888887777641 1
Q ss_pred ccCCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEE
Q 011517 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKA 424 (484)
Q Consensus 345 ~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a 424 (484)
+..+++..++.+.|..++|++..++|++.++||.+|++++++.+++++++++..+.+|+|.+.+.|+|++++.
T Consensus 186 -------~~~~~~~~~~~~~~~~~~gg~~~~~p~a~~~dG~l~~~i~~~~~~~~~~~l~~~~~~G~~~~~~~v~~~~~~~ 258 (301)
T COG1597 186 -------KTFEGEALALLVFNGNSYGGGMKLAPDASLDDGLLDVYILKPQSLLELLALLPDLLRGKHLENPDVEYLRAKK 258 (301)
T ss_pred -------cEEEEEEEEEEEecCcccccccccCCcCCCCCceEEEEEEccccHHHHHHHHHHHhCCCccCCCCeEEEeccE
Confidence 1235566778888888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 425 FILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
++|++. .+..+++|||..+..|+++++.|++|.+++|
T Consensus 259 ~~i~~~-------~~~~~~~DGE~~~~~p~~i~~~p~al~vl~p 295 (301)
T COG1597 259 LEITSD-------PPIPVNLDGEYLGKTPVTIEVLPGALRVLVP 295 (301)
T ss_pred EEEEcC-------CCceEeeCCccCCCCcEEEEEecccEEEEcC
Confidence 999986 3578999999999988999999999998887
No 12
>PRK13054 lipid kinase; Reviewed
Probab=100.00 E-value=7.8e-47 Score=379.89 Aligned_cols=290 Identities=20% Similarity=0.235 Sum_probs=245.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
++++++|+||.++. .+.+. ++.+.|.++++++++..|++++|+.++++++...++|.||++|||||+|||+|+|+.
T Consensus 3 ~~~~~~i~N~~~~~---~~~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~evv~~l~~ 78 (300)
T PRK13054 3 FPKSLLILNGKSAG---NEELR-EAVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDGTINEVATALAQ 78 (300)
T ss_pred CceEEEEECCCccc---hHHHH-HHHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCccHHHHHHHHHHh
Confidence 57899999998763 34564 567789999999999999999999999999877789999999999999999999987
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccccc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~ 268 (484)
++. ..++|||+||+||+|+||++| |+|.++..|+..|..|+.+++|+++|+. .++| ++++++||++++..
T Consensus 79 ~~~---~~~~~lgiiP~GTgNdfar~l----gi~~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f-~n~~~~G~~a~v~~ 148 (300)
T PRK13054 79 LEG---DARPALGILPLGTANDFATAA----GIPLEPDKALKLAIEGRAQPIDLARVND--RTYF-INMATGGFGTRVTT 148 (300)
T ss_pred hcc---CCCCcEEEEeCCcHhHHHHhc----CCCCCHHHHHHHHHhCCceEEEEEEEcC--ceEE-EEEeecchhHHHHH
Confidence 531 126899999999999999999 8999999999999999999999999973 2366 56899999999986
Q ss_pred cc-cc-ccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccc
Q 011517 269 ES-EK-YRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (484)
Q Consensus 269 ~s-ek-~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (484)
+. ++ ++.+|+++|.+.+++++++.+.|+.+|.. ++
T Consensus 149 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d~----- 185 (300)
T PRK13054 149 ETPEKLKAALGGVAYLIHGLMRMDTLKPDRCEIRG--------------------------------------PD----- 185 (300)
T ss_pred hhHHHHHhccchHHHHHHHHHHHhhCCCeEEEEEe--------------------------------------CC-----
Confidence 64 33 34689999999999999988888776641 01
Q ss_pred CCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEE
Q 011517 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFI 426 (484)
Q Consensus 347 ~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~ 426 (484)
+..++++.++.++|.+|+|+++.++|+|.++||.||++++++ +++++.+++.+..|++...|.|.++++++++
T Consensus 186 -----~~~~~~~~~~~v~N~~~~ggg~~~~p~a~~~DG~ldv~~~~~--~~~~l~~l~~~~~g~~~~~~~v~~~~~~~v~ 258 (300)
T PRK13054 186 -----FHWQGDALVIGIGNGRQAGGGQQLCPEALINDGLLDLRILPA--PQELLPTLLSTLTGGSEDNPNIIRARLPWLE 258 (300)
T ss_pred -----cEEEeeEEEEEEECCCcCCCCcccCCCCcCCCCeEEEEEECC--HHHHHHHHHHHHhCCCCCCCcEEEEECCEEE
Confidence 122457788899999999999999999999999999999998 6788888877777776668999999999999
Q ss_pred EEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccccE
Q 011517 427 LEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKL 469 (484)
Q Consensus 427 i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~ 469 (484)
|++. ++..+++|||..+..|+++++.|++|.++.|-
T Consensus 259 i~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~vl~p~ 294 (300)
T PRK13054 259 IQAP-------HELTFNLDGEPLSGRHFRIEVLPAALRCRLPP 294 (300)
T ss_pred EEcC-------CCCEEEeCCCcCCCccEEEEEEcCeeEEEeCC
Confidence 9975 35689999999987788888888888888763
No 13
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=100.00 E-value=7.3e-47 Score=378.87 Aligned_cols=285 Identities=21% Similarity=0.227 Sum_probs=239.3
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
++++|+||.||..+ .|. ++.+.|++++++++++.|++++||.++++++...++|.||++|||||+|||+|||+.+.
T Consensus 1 ~~~~I~N~~~~~~~---~~~-~~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vv~~GGDGTi~ev~ngl~~~~ 76 (293)
T TIGR03702 1 KALLILNGKQADNE---DVR-EAVGDLRDEGIQLHVRVTWEKGDAQRYVAEALALGVSTVIAGGGDGTLREVATALAQIR 76 (293)
T ss_pred CEEEEEeCCccchh---HHH-HHHHHHHHCCCeEEEEEecCCCCHHHHHHHHHHcCCCEEEEEcCChHHHHHHHHHHhhC
Confidence 47899999987332 454 66778999999999999999999999999987778999999999999999999998764
Q ss_pred CcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccccccc
Q 011517 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDIES 270 (484)
Q Consensus 191 ~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~~s 270 (484)
++ ..+|||+||+||||+|||+| |+|.++.+|+..|..|+++++|++.++. +++| ++++++||+|++..+.
T Consensus 77 ~~---~~~~lgiiP~GTgNdfAr~l----~ip~~~~~a~~~i~~g~~~~iDlg~v~~--~~~f-~n~~~~G~da~v~~~~ 146 (293)
T TIGR03702 77 DD---AAPALGLLPLGTANDFATAA----GIPLEPAKALKLALNGAAQPIDLARVNG--KHYF-LNMATGGFGTRVTTET 146 (293)
T ss_pred CC---CCCcEEEEcCCchhHHHHhc----CCCCCHHHHHHHHHhCCceeeeEEEECC--ccEE-EEEeecccchHhhhhh
Confidence 32 25799999999999999999 8999999999999999999999999973 2556 5689999999998653
Q ss_pred --ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCccccCC
Q 011517 271 --EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDLKN 348 (484)
Q Consensus 271 --ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 348 (484)
++++++|.++|.+++++.+.+.+.|+.++..
T Consensus 147 ~~~~k~~~G~~aY~~~~l~~l~~~~~~~~~i~~----------------------------------------------- 179 (293)
T TIGR03702 147 SEKLKKALGGAAYLITGLTRFSELTAASCEFRG----------------------------------------------- 179 (293)
T ss_pred hHHHHhccchHHHHHHHHHHHhhCCCeEEEEEE-----------------------------------------------
Confidence 3445689999999999999887777665531
Q ss_pred CceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEE
Q 011517 349 LEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILE 428 (484)
Q Consensus 349 ~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~ 428 (484)
++ ..+++++.++.++|.+|+|+++.++|.|+++||.||++++++ ++.++.++..+..|++ .+.+.++++++++|+
T Consensus 180 ~~-~~~~~~~~~~~v~N~~~~GGg~~i~P~A~~~DG~Ldv~~v~~--~~~~~~~l~~~~~g~~--~~~~~~~~~~~i~i~ 254 (293)
T TIGR03702 180 PD-FHWEGDFLALGIGNGRQAGGGQVLCPDALINDGLLDVRILPA--PELLPATLSTLFGGDK--NPEFVRARLPWLEIE 254 (293)
T ss_pred CC-EEEEeeEEEEEEECCCcCCCCceeCCCCccCCceEEEEEeCC--HHHHHHHHHHHhcCCC--CCcEEEEEcCEEEEE
Confidence 00 123456778889999999999999999999999999999987 6778888888888863 467888899999999
Q ss_pred eCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 429 PGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 429 ~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
+. ++..+++|||.++..|+++++.|++|.++.|
T Consensus 255 ~~-------~~~~~~vDGE~~~~~p~~i~v~p~al~v~~p 287 (293)
T TIGR03702 255 AP-------QPLTFNLDGEPLSGRHFRIEVLPGALRCHLP 287 (293)
T ss_pred eC-------CCcEEEECCCcCCCceEEEEEEcCeEEEEcC
Confidence 75 3568999999998778888888888888776
No 14
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=100.00 E-value=5.4e-46 Score=372.60 Aligned_cols=288 Identities=25% Similarity=0.327 Sum_probs=246.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+|+++|+||.||++++.+.| +++++.|++.++++.++.|++.+|+.+++++....++|.||++|||||+||++|+|...
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGTl~~v~~~l~~~ 80 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPL-REVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGTINEVVNALIQL 80 (293)
T ss_pred ceEEEEECCCccchhhHHHH-HHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCChHHHHHHHHhcC
Confidence 68999999999999888777 47899999999999999999999998888766556799999999999999999999875
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeE-EEEEeeeeeeeccccc
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRF-HSVLMLAWGLVADIDI 268 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~-fs~~~~~~G~~adv~~ 268 (484)
.+ .+|||+||+||+|+||++| ++|.++.+++..+..|+.+++|++.+++ ++ | ++++++|+++++..
T Consensus 81 ~~-----~~~lgiiP~Gt~N~~a~~l----~i~~~~~~~~~~l~~~~~~~~Dlg~v~~---~~~f-ln~~g~G~~a~v~~ 147 (293)
T TIGR00147 81 DD-----IPALGILPLGTANDFARSL----GIPEDLDKAAKLVIAGDARAIDMGQVNK---QYCF-INMAGGGFGTEITT 147 (293)
T ss_pred CC-----CCcEEEEcCcCHHHHHHHc----CCCCCHHHHHHHHHcCCceEEEEEEECC---eEEE-EEEEeechhhHhHh
Confidence 31 4699999999999999999 8888999999999999999999999973 55 5 56899999999876
Q ss_pred cc--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccc
Q 011517 269 ES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (484)
Q Consensus 269 ~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (484)
+. +.++.+|.++|.+++++.+.+.+.|+.+|.. ++
T Consensus 148 ~~~~~~k~~~g~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------d~----- 184 (293)
T TIGR00147 148 ETPEKLKAALGSLSYILSGLMRMDTLQPFRCEIRG--------------------------------------EG----- 184 (293)
T ss_pred hCCHHHHhccchHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------CC-----
Confidence 54 2344679999999999998877777666532 01
Q ss_pred CCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEE
Q 011517 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFI 426 (484)
Q Consensus 347 ~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~ 426 (484)
+.++.+..++.++|.+++|+++.++|++.++||.||++++++.++++++++++++..|+|...|.|+++++++++
T Consensus 185 -----~~~~~~~~~~~v~n~~~~gg~~~~~p~a~~~DG~l~v~~v~~~~~~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~ 259 (293)
T TIGR00147 185 -----EHWQGEAVVFLVGNGRQAGGGQKLAPDASINDGLLDLRIFTNDNLLPALVLTLMSDEGKHTDNPNIIYGKASRID 259 (293)
T ss_pred -----eEEEeeEEEEEEeCCcccCCCcccCCccccCCCeeEEEEEcCCCHHHHHHHHHHHhcCCCCCCCcEEEEEccEEE
Confidence 223456667788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccc
Q 011517 427 LEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSY 466 (484)
Q Consensus 427 i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~ 466 (484)
|++.+ +..+++|||.++..|+++++.|++|.++
T Consensus 260 i~~~~-------~~~~~iDGE~~~~~p~~i~v~p~al~~~ 292 (293)
T TIGR00147 260 IQTPH-------KITFNLDGEPLGGTPFHIEILPAHLRCR 292 (293)
T ss_pred EEcCC-------CcEEEeCCCcCCCCcEEEEEEhhccEEe
Confidence 99753 4689999999977667777777766543
No 15
>PRK12361 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=360.15 Aligned_cols=293 Identities=20% Similarity=0.232 Sum_probs=235.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
..++++++|+||.||++++.+.+ ++++..|++. ++++++.|++.+|+.++++++..+++|.||++|||||+|||+|+|
T Consensus 240 ~~~~~~~iI~NP~SG~g~~~~~~-~~i~~~L~~~-~~~~v~~t~~~~~a~~la~~~~~~~~d~Viv~GGDGTl~ev~~~l 317 (547)
T PRK12361 240 NIHKRAWLIANPVSGGGKWQEYG-EQIQRELKAY-FDLTVKLTTPEISAEALAKQARKAGADIVIACGGDGTVTEVASEL 317 (547)
T ss_pred ccCCceEEEECCCCCCCcHHHHH-HHHHHHHhcC-CceEEEECCCCccHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHH
Confidence 44689999999999999988877 5888889876 899999999999999999998767899999999999999999999
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcccccCCC---CCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeee
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEP---CKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLV 263 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~---~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~ 263 (484)
... ++|||+||+||+|+||++|+ |++ .++++|+..|..|..+++|++.|++ ++| ++++++|++
T Consensus 318 ~~~-------~~~lgiiP~GTgNdfAr~L~---gi~~~~~~~~~a~~~i~~g~~~~iD~g~vn~---~~f-ln~agiG~d 383 (547)
T PRK12361 318 VNT-------DITLGIIPLGTANALSHALF---GLGSKLIPVEQACDNIIQGHTQRIDTARCND---RLM-LLLVGIGFE 383 (547)
T ss_pred hcC-------CCCEEEecCCchhHHHHHhc---CCCCCCccHHHHHHHHHhCCCeEEEEEEEcC---eEE-EEEEeechh
Confidence 865 58999999999999999983 343 4789999999999999999999973 566 568999999
Q ss_pred ccccccc--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCC
Q 011517 264 ADIDIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQG 341 (484)
Q Consensus 264 adv~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 341 (484)
+++..+. ++++.+|.++|.+++++.+.+.+.|+.+|+.- |
T Consensus 384 a~v~~~~~~~~k~~~G~laY~~~~~~~l~~~~~~~l~i~~d--------------------------------------g 425 (547)
T PRK12361 384 QKMIESADRERKNALGQLAYLDGLWRAVNENETLTLTVTLD--------------------------------------D 425 (547)
T ss_pred HHHHHhccHHHHhccCHHHHHHHHHHHhhcCCCeeEEEEEC--------------------------------------C
Confidence 9998664 34557899999999999998888887776520 1
Q ss_pred CccccCCCceEEEeecEEEEEEeecccCCCCC-ccCCCCccCCCeEEEEEEecCC--HHHHHHHHHhhccC--CCCcCCc
Q 011517 342 PDVDLKNLEWRIINGPFVAVWLHNVPWGSENT-MAAPDAKFSDGYLDLIIIKDCP--KLALFSLLSNLNKG--GHVESPY 416 (484)
Q Consensus 342 ~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~-~~aP~a~~~DG~ldlv~i~~~s--~~~ll~~l~~~~~G--~~~~~p~ 416 (484)
. . ..+.+..++.++|.+.+++.. .-.+.++++||.||++++++.+ +.+++.++..+..| +|...+.
T Consensus 426 ~-------~--~~~~~~~~l~v~N~~~~~~~~~~Ggg~~~~~DG~Ldv~~v~~~~~~~~~l~~l~~~~~~g~~~~~~~~~ 496 (547)
T PRK12361 426 A-------E--PQTISTHSLVVANAAPFTSLLAQGGGEPNMTDGLLDITWLDSGGEPGEQLLSLAELALSGLGKEPEANK 496 (547)
T ss_pred C-------C--ceEEEEEEEEEEcCCCcccccccCCCCCCCCCceeEEEEEcCCCcchHHHHHHHHHHHHHhcccCCCCc
Confidence 0 0 112244556678875432111 0122458999999999999876 35777666555444 5678899
Q ss_pred EEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCcccccccE
Q 011517 417 VAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDKL 469 (484)
Q Consensus 417 V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p~ 469 (484)
|+++++++++|+.. ++..+++|||.++..|+++++.|++|.++.|-
T Consensus 497 v~~~~~k~v~I~~~-------~~~~~~iDGE~~~~~p~~i~v~p~al~vlvp~ 542 (547)
T PRK12361 497 VHHAHAKKVTISSQ-------KPIKYVIDGELFEDEDLTIEVQPASLKVFVPY 542 (547)
T ss_pred eEEEEeeEEEEEeC-------CceEEEECCccCCceEEEEEEecCceEEEecC
Confidence 99999999999975 35679999999988889999999999888873
No 16
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=99.93 E-value=9e-26 Score=199.38 Aligned_cols=126 Identities=41% Similarity=0.688 Sum_probs=108.9
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCC-ceEEEEcCCChHHHHHHHHhcC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-DGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~-d~IV~vGGDGtl~evingL~~~ 189 (484)
|++||+||.||++++. | +++++.|+.++.+++++.|++.+++.++++....+.+ |.||++|||||+|+++|+|+..
T Consensus 1 k~~vi~Np~sG~~~~~--~-~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~ 77 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAK--W-KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGS 77 (130)
T ss_dssp SEEEEEETTSTTSHHH--H-HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTS
T ss_pred CEEEEECCCCCCCchh--H-HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhc
Confidence 5899999999999998 6 7999999999999999999999999999886666677 9999999999999999999998
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHH-HHHHHHhCceeeeeEEEEE
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~-A~~~i~~g~~~~lDl~~V~ 246 (484)
.... ++|||+||+||+|+||+++ +.+.++.. ++..+..+..+.+|+++|+
T Consensus 78 ~~~~---~~~l~iiP~GT~N~~ar~l----g~~~~~~~~a~~~~~~~~~~~~d~~~v~ 128 (130)
T PF00781_consen 78 DRED---KPPLGIIPAGTGNDFARSL----GIPSDPEANAALLIILGRVRKIDVGKVN 128 (130)
T ss_dssp TSSS-----EEEEEE-SSS-HHHHHT----T--SSHHH-HHHHHHHSEEEEEEEEEET
T ss_pred CCCc---cceEEEecCCChhHHHHHc----CCCCCcHHHHHHHHHhCCCcEeEEEEeC
Confidence 5432 6899999999999999999 78888888 8888999999999999986
No 17
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.90 E-value=2.1e-23 Score=205.97 Aligned_cols=187 Identities=30% Similarity=0.486 Sum_probs=153.3
Q ss_pred cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 106 ~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..||||++|++||.+.++++...|.+...|+|..+|++++++.|.+++||+.+++.++. ..|.|+|+|||||+.||+.|
T Consensus 57 ~~~~Kkv~V~~Np~ank~~~r~~f~kna~P~lHLaG~~V~Ivktd~~gqak~l~e~~~t-~~Dii~VaGGDGT~~eVVTG 135 (535)
T KOG4435|consen 57 ETRPKKVFVLVNPEANKRGCRDQFNKNALPLLHLAGVQVDIVKTDNQGQAKALAEAVDT-QEDIIYVAGGDGTIGEVVTG 135 (535)
T ss_pred ccccceEEEEechhhccchhhhhhhcccchheeeccceEEEEecCcHHHHHHHHHHhcc-CCCeEEEecCCCcHHHhhHH
Confidence 36789999999999999999888999999999999999999999999999999999984 45999999999999999999
Q ss_pred HhcCcCcccccCCcEEEecCCCchhhhhhccccc----CCCCCHHHHHHHHHhCce---eeeeEEEEEeCC--eeEEEEE
Q 011517 186 LLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLV----GEPCKASNAILAVIRGHK---RLLDVATILQGK--TRFHSVL 256 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~----g~~~~~~~A~~~i~~g~~---~~lDl~~V~~~~--~~~fs~~ 256 (484)
++.|. ....|++++|.|--|--..+-...+ ..-..+.+|+++++++.. .++||.. .|+ .+.|...
T Consensus 136 i~Rrr----~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~ksv~~fdv~~--~gs~l~P~fgl~ 209 (535)
T KOG4435|consen 136 IFRRR----KAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKKSVYAFDVTT--EGSTLAPEFGLG 209 (535)
T ss_pred HHhcc----cccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhcccccceEEEEecc--CCCccccccccC
Confidence 99984 2368999999999876555432211 112245678899999987 5677765 333 3679999
Q ss_pred eeeeeeecccccccccccccCChhhHHHHHHHHHhccccceEEEE
Q 011517 257 MLAWGLVADIDIESEKYRWMGSARIDFYALQRILYLRQYNGRVSF 301 (484)
Q Consensus 257 ~~~~G~~adv~~~sek~R~~G~~ry~~~~l~~l~~~r~y~~~is~ 301 (484)
.++||..-|++....||.++|+++-..+.++.++ ++|+.++.+
T Consensus 210 glswG~frdi~~~~~KyWYfgplk~~aA~f~s~l--k~wpak~e~ 252 (535)
T KOG4435|consen 210 GLSWGWFRDIEDTRKKYWYFGPLKRRAAYFWSML--KRWPAKIEC 252 (535)
T ss_pred ccchhhhhhhhhhhhheeeecHHHHHHHHHHHHH--hcCCCceeE
Confidence 9999999999999999999999977667777775 456555544
No 18
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-22 Score=207.43 Aligned_cols=301 Identities=17% Similarity=0.158 Sum_probs=190.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
-..++||+||+||.+.+..+. ...+.+|...++ +++-.+..+.-+..+.+++ .+..|+++|||||+..|++.+-+
T Consensus 271 ~~PLlVfvNpKSGg~~G~~ll-~~f~~lLnp~QV-fdl~~~~~p~~gL~l~~~~---~~~riLVcGGDGTvGWVL~~i~~ 345 (634)
T KOG1169|consen 271 WRPLLVFVNPKSGGQQGERLL-RRFRYLLNPVQV-FDLLKRGGPRPGLTLFRDV---PDFRILVCGGDGTVGWVLGCIDK 345 (634)
T ss_pred CcceEEEEecCCcccccHHHH-HHHHHhcChhhE-EecccCCCCchhHHHHHhC---CcceEEEecCCCcchhhhhhHHH
Confidence 357999999999999998765 477777776543 3443333244555566554 34599999999999999999877
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCC---HHHHHHHHHhCceeeeeEEEEEeC----C------------
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK---ASNAILAVIRGHKRLLDVATILQG----K------------ 249 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~---~~~A~~~i~~g~~~~lDl~~V~~~----~------------ 249 (484)
.........+|+||+|.|||||+++.|.|+.|.+.. +...+..|..+....+|=.+|... .
T Consensus 346 ~n~~~~~~~PpVAilPLGTGNDLsR~l~WGgg~~g~~~~~~~iL~~i~~a~v~~lDrW~v~v~~~~~~~~~~~~~~~~~~ 425 (634)
T KOG1169|consen 346 LNKQNAIPPPPVAILPLGTGNDLSRVLRWGGGYPGEDRNLIKILKDIEEAPVTKLDRWKVLVEPQSGELVQYSLKPPEKG 425 (634)
T ss_pred hhccccCCCCCeEEEecCCCCchHhhcCCCCCCCcchhhHHHHHHhhhhccceecceeeEEeeccccccccccccCCCcC
Confidence 532223347899999999999999999998777776 778889999999999999888521 1
Q ss_pred ---eeEEEEEeeeeeeecccccccccccc----------cCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcc
Q 011517 250 ---TRFHSVLMLAWGLVADIDIESEKYRW----------MGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTY 316 (484)
Q Consensus 250 ---~~~fs~~~~~~G~~adv~~~sek~R~----------~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~ 316 (484)
...+.++.+|+|.+|.|.++....|= +.++.|.-.+.+..+..+.+.-.+
T Consensus 426 ~~~~~~imnNYFSIGvDA~Ia~~FH~~Re~~PekF~Sr~~NKl~Yf~~G~q~~f~~~ck~~~~----------------- 488 (634)
T KOG1169|consen 426 DPVPYGIMNNYFSIGVDAQIAYGFHNMREKNPEKFNSRMKNKLWYFEFGTQETFAARCKNLHL----------------- 488 (634)
T ss_pred CCCCeeeEeeeeeecccHHHHHHHHHHhhhChHhhcchhhceeeeeeecchhhHHHhhcCCcc-----------------
Confidence 02345678999999999987655442 233333333322222211111000
Q ss_pred cccCcCCCCCCCCCcccccccccCCCccccCCCceEEEeec--EEEEEEeecccCCCCCccCC-------------CCcc
Q 011517 317 SEQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGP--FVAVWLHNVPWGSENTMAAP-------------DAKF 381 (484)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~--f~~v~~~N~~~~g~~~~~aP-------------~a~~ 381 (484)
+.. ... ..+|+.++-+ .=.+.+-|.+++++|..+-- .+.-
T Consensus 489 --------------~i~---i~~--------~~d~~dl~~p~sleGIv~LNIpS~ggG~nlWg~~~~~~~~~~~~~~~d~ 543 (634)
T KOG1169|consen 489 --------------HIK---IEL--------DGDGEDLELPKSLEGIVVLNIPSWGGGSNLWGNSNKSKGNFRGFSEADD 543 (634)
T ss_pred --------------ceE---EEE--------cccceEccCCCCceeEEEEcccccccCcccccccCccccccccccccCC
Confidence 000 000 1233443222 23477889999998875311 1223
Q ss_pred CCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCCceeeecC-
Q 011517 382 SDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQ- 460 (484)
Q Consensus 382 ~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~- 460 (484)
+||.+.++-|++.... +..+..+..+.|+.- .......++|... +..++|||||..-+.|.++++.+
T Consensus 544 ~dgliEvvgv~~~~h~--~~~qvgL~~a~rigQ---~~a~~~~~~i~~~-------k~~PMQiDGEPW~Q~p~tI~Ithk 611 (634)
T KOG1169|consen 544 DDGLIEVVGVQDSWHL--LQEQVGLESALRIGQ---RLAQCSERVIGTK-------KTFPMQIDGEPWMQPPCTIEITHK 611 (634)
T ss_pred CcCeEEEEEeccchhh--hhhhhccchhhHHHH---HhhccEEEEeccc-------cCcceecCCccccCCCceEEEEec
Confidence 5699999999875433 333334444444331 0001223335543 46789999999999999888744
Q ss_pred -Cccccccc
Q 011517 461 -KSLMSYDK 468 (484)
Q Consensus 461 -~~l~~~~p 468 (484)
++.|.+.|
T Consensus 612 ~q~~mL~~~ 620 (634)
T KOG1169|consen 612 NQAPMLMKA 620 (634)
T ss_pred chHhhhhcc
Confidence 33444444
No 19
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=99.84 E-value=3.3e-21 Score=168.81 Aligned_cols=105 Identities=32% Similarity=0.419 Sum_probs=79.8
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
+||+||+||++++.+++. +++..+... .++.| +...|+.++++++ ..+|.||++|||||+||++|+|+...
T Consensus 1 lvi~NP~sG~~~~~~~~~-~~~~~l~~~----~v~~t~~~~~~~~~~~~~~~--~~~d~vvv~GGDGTi~~vvn~l~~~~ 73 (124)
T smart00046 1 LVFVNPKSGGGKGVKLLR-KFRLLLNPA----QVFDLTKKGPAAALVIFRDL--PKFDRVLVCGGDGTVGWVLNALDKRE 73 (124)
T ss_pred CEEEcCCCCCCccHHHHH-HHHHHcCCc----eEEEEecCChHHHHHHHhhc--CcCCEEEEEccccHHHHHHHHHHhcc
Confidence 589999999999887664 666666543 34444 4456666666665 36899999999999999999998764
Q ss_pred CcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHH
Q 011517 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAIL 230 (484)
Q Consensus 191 ~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~ 230 (484)
.. ...+|||+||+||+|+||++| |+|.++..+..
T Consensus 74 ~~--~~~~plgiiP~GTgNdfar~l----gi~~~~~~~~~ 107 (124)
T smart00046 74 LP--LPEPPVAVLPLGTGNDLARSL----GWGGGYDGEKL 107 (124)
T ss_pred cc--cCCCcEEEeCCCChhHHHHHc----CCCCCcccccH
Confidence 32 123899999999999999999 66666655543
No 20
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=99.80 E-value=7.4e-19 Score=179.67 Aligned_cols=284 Identities=21% Similarity=0.216 Sum_probs=179.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+-.+.++||+||+||..++.|+.+ ..-=+|.-..+ +++ ....+..|.|+-++.. .-.|++||||||+..++.-|
T Consensus 363 plmkPLLVFVNPKSGGNqGsK~lq-~f~WyLNPRQV-FDl-sq~GPK~aLEmyRKV~---nLRILaCGGDGTVGWiLStL 436 (1004)
T KOG0782|consen 363 PLMKPLLVFVNPKSGGNQGSKALQ-TFCWYLNPRQV-FDL-SQLGPKFALEMYRKVV---NLRILACGGDGTVGWILSTL 436 (1004)
T ss_pred CCCCceEEEecCCCCCcchHHHHH-HHHHhcChhhh-eeh-hccCcHHHHHHHHhcc---ceEEEEecCCCceeehhhhh
Confidence 335789999999999999987654 34444444432 333 3346777888877764 25899999999999999888
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCC-HHHHHHHHHhCceeeeeEEEEEeC-------------Ce--
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK-ASNAILAVIRGHKRLLDVATILQG-------------KT-- 250 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~-~~~A~~~i~~g~~~~lDl~~V~~~-------------~~-- 250 (484)
-+.. | ...+|+||+|.|||||+|+.++|+.|.... +...+.++..|....+|-+.++-. -.
T Consensus 437 D~L~-l--~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gtvVqLDRW~lhvEpNp~~~pEe~ddG~~~~ 513 (1004)
T KOG0782|consen 437 DNLN-L--PPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGTVVQLDRWRLHVEPNPSCNPEEEDDGMQSA 513 (1004)
T ss_pred hhcC-C--CCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCcEEeeeeeeecccCCCCCChhhhcccchhc
Confidence 5542 1 236899999999999999999998776654 456667888999999999888521 00
Q ss_pred ---eEEEEEeeeeeeecccccccccccccCC----------hhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCccc
Q 011517 251 ---RFHSVLMLAWGLVADIDIESEKYRWMGS----------ARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYS 317 (484)
Q Consensus 251 ---~~fs~~~~~~G~~adv~~~sek~R~~G~----------~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~ 317 (484)
..| ++.+++||+|.|..+....|-..+ +.|.-.++.-++.. +..
T Consensus 514 LPL~Vf-nNYFSlGfDAHVtLeFHeSReANPekfNSRfrNkmfYaG~afsDfl~r-Ssk--------------------- 570 (1004)
T KOG0782|consen 514 LPLTVF-NNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGLAFSDFLKR-SSK--------------------- 570 (1004)
T ss_pred cchhHh-hccccccccceEEEEeccccccCHHHHHHHHhhhhhhcchhHHHHHhh-hhH---------------------
Confidence 134 457899999999987544443222 22222222223211 100
Q ss_pred ccCcCCCCCCCCCcccccccccCCCccccCCCceEEEeecEEEEEEeecccCCCCCccC--C-------CCccCCCeEEE
Q 011517 318 EQNICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAA--P-------DAKFSDGYLDL 388 (484)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~a--P-------~a~~~DG~ldl 388 (484)
..|+.. .+..+|...++ .-+ +-++-.+.+.|.|+|++|.+.- | ..+.+||++.+
T Consensus 571 -------DL~khi-----~vvCDG~DlTP---kIq--eLK~qCivFlNIprYcaGTmPWG~pgdhhDfePqrhdDGyvEV 633 (1004)
T KOG0782|consen 571 -------DLCKHI-----TVVCDGVDLTP---KIQ--ELKLQCIVFLNIPRYCAGTMPWGEPGDHHDFEPQRHDDGYVEV 633 (1004)
T ss_pred -------Hhhhhe-----EEEecCccCCh---hhh--hcccceEEEecchhhhcCccCCCCCCccccCCccccCCceEEE
Confidence 000000 01123322211 111 1234456778999998886431 2 12358999999
Q ss_pred EEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCccccCCceee
Q 011517 389 IIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEVLARGKGTYQ 457 (484)
Q Consensus 389 v~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~ 457 (484)
+-+.-.+ |.++.-|.|-. ...+++++++... +..+++||||.....|-.++
T Consensus 634 iGFTmas-------LAALQvGGhGE----Rl~QCreV~l~T~-------KaIPmQVDGEPC~LAps~Ir 684 (1004)
T KOG0782|consen 634 IGFTMAS-------LAALQVGGHGE----RLAQCREVRLITN-------KAIPMQVDGEPCLLAPSIIR 684 (1004)
T ss_pred EeeeHHH-------HHHHhhcCcch----hhhhceeEEEEec-------cccceeecCcchhcchhheE
Confidence 9887432 33444555532 2357888888765 46789999999876555444
No 21
>smart00045 DAGKa Diacylglycerol kinase accessory domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain might either be an accessory domain or else contribute to the catalytic domain. Bacterial homologues are known.
Probab=99.38 E-value=7.8e-13 Score=120.98 Aligned_cols=134 Identities=13% Similarity=0.122 Sum_probs=95.0
Q ss_pred EEeeeeeeecccccccc--c--------ccccCChhhHHHHHHHHHhcc--c--cceEEEEecCCCCCCCCCCCcccccC
Q 011517 255 VLMLAWGLVADIDIESE--K--------YRWMGSARIDFYALQRILYLR--Q--YNGRVSFVPAPGFENHGEPSTYSEQN 320 (484)
Q Consensus 255 ~~~~~~G~~adv~~~se--k--------~R~~G~~ry~~~~l~~l~~~r--~--y~~~is~~p~~~~~~~~~~~~~~~~~ 320 (484)
++++|+||+|+|..+.+ + .|++|.++|.+.+++.++..+ . ++.+|.+
T Consensus 3 ~N~~giGfDA~V~~~~~~~r~~~~~~~~~~~~g~l~Y~~~~l~~l~~~~~~~~~~~~~i~~------------------- 63 (160)
T smart00045 3 NNYFSIGVDAHIALEFHNKREANPEKFNSRLKNKMWYFELGTKDLFFRTCKDLHERIELEC------------------- 63 (160)
T ss_pred cccccccHhHHHHHHHHHHhhcCchhhcccceeeeeeeecchHHhhhccccchhhceEEEE-------------------
Confidence 35799999999987542 2 246799999999999886532 1 2233321
Q ss_pred cCCCCCCCCCcccccccccCCCccccCCCceEEEeecEEEEEEeecccCCCCCccC----------CCCccCCCeEEEEE
Q 011517 321 ICNPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAA----------PDAKFSDGYLDLII 390 (484)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~a----------P~a~~~DG~ldlv~ 390 (484)
+|.. + ..+.....+.++|.+++|+++.++ |+|+++||.||+++
T Consensus 64 -------------------dg~~-------~-~~~~~~~~v~v~N~~~~ggG~~i~p~~~~~~~~~p~a~~~DG~ldv~~ 116 (160)
T smart00045 64 -------------------DGVD-------V-DLPNSLEGIAVLNIPSYGGGTNLWGTTDKEDLNFSKQSHDDGLLEVVG 116 (160)
T ss_pred -------------------CCEe-------c-cCCCCccEEEEECCCccccCcccccCCcccccccCCCCCCCceEEEEE
Confidence 1100 0 011134567899999999999999 88999999999999
Q ss_pred EecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCc
Q 011517 391 IKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEV 448 (484)
Q Consensus 391 i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~ 448 (484)
+++.+++.++. |...+.+++.++++++|+... +++.++++|||.
T Consensus 117 ~~~~~~~~~~~---------~~~~~~v~~~~~~~v~i~i~~-----~~~~~~q~DGE~ 160 (160)
T smart00045 117 LTGAMHMAQIR---------QVGLAGRRIAQCSEVRITIKT-----SKTIPMQVDGEP 160 (160)
T ss_pred EcCchhhhhhh---------hccCCCceeecCceEEEEEec-----CCceeeecCCCC
Confidence 99887764432 456778999999999944221 245789999994
No 22
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.98 E-value=3.3e-09 Score=105.39 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=82.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHH-HHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~-~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
|+.++.|+ |+..+.+.+ +++...|+..|+++.+.. ++..+++.... ..+...++|.||++|||||+.++++ +.
T Consensus 2 ~v~iv~~~--~k~~~~~~~-~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDGTlL~a~~-~~ 77 (277)
T PRK03708 2 RFGIVARR--DKEEALKLA-YRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDGTILRIEH-KT 77 (277)
T ss_pred EEEEEecC--CCHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcHHHHHHHH-hc
Confidence 67888888 445666655 689999999999888752 33333332222 1333347899999999999999999 76
Q ss_pred cCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
.. .+||..||+|+. +|...+ . +.+...++..+.+|...
T Consensus 78 ~~-------~~pi~gIn~G~l-GFl~~~----~-~~~~~~~l~~i~~g~~~ 115 (277)
T PRK03708 78 KK-------DIPILGINMGTL-GFLTEV----E-PEETFFALSRLLEGDYF 115 (277)
T ss_pred CC-------CCeEEEEeCCCC-CccccC----C-HHHHHHHHHHHHcCCce
Confidence 54 689999999999 787776 3 56778899999999743
No 23
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.80 E-value=2.9e-08 Score=100.09 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=83.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+.+++++|+|| |+.++.+.. +++...|++.|+++.+..++...++.+...+....++|.||++|||||+.++++.+.
T Consensus 2 ~~kkv~lI~n~--~~~~~~~~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT~l~~~~~~~ 78 (305)
T PRK02645 2 QLKQVIIAYKA--GSSQAKEAA-ERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDGTVLAAARHLA 78 (305)
T ss_pred CcCEEEEEEeC--CCHHHHHHH-HHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcHHHHHHHHHhc
Confidence 35789999999 666666655 578888999999988877655443322222222346899999999999999999997
Q ss_pred cCcCcccccCCcEEEecC-CCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 188 EREDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~-GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
.. .+|+..|.+ |+-.-|+..- ....+ .+++..|.+|...
T Consensus 79 ~~-------~~pv~gin~~G~lGFL~~~~----~~~~~-~~~l~~i~~g~~~ 118 (305)
T PRK02645 79 PH-------DIPILSVNVGGHLGFLTHPR----DLLQD-ESVWDRLQEDRYA 118 (305)
T ss_pred cC-------CCCEEEEecCCcceEecCch----hhcch-HHHHHHHHcCCce
Confidence 54 689999998 7766666321 11223 6788999999744
No 24
>PF00609 DAGK_acc: Diacylglycerol kinase accessory domain; InterPro: IPR000756 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. The DAG kinase domain is assumed to be an accessory domain. Upon cell stimulation, DAG kinase converts DAG into phosphatidate, initiating the resynthesis of phosphatidylinositols and attenuating protein kinase C activity. It catalyses the reaction: ATP + 1,2-diacylglycerol = ADP + 1,2-diacylglycerol 3-phosphate. The enzyme is stimulated by calcium and phosphatidylserine and phosphorylated by protein kinase C. This domain is always associated with IPR001206 from INTERPRO.; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway
Probab=98.41 E-value=1.4e-06 Score=79.86 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=86.7
Q ss_pred EEeeeeeeeccccccccc----c------cccCChhhHHHHHHHHHhccccc--eEEEEecCCCCCCCCCCCcccccCcC
Q 011517 255 VLMLAWGLVADIDIESEK----Y------RWMGSARIDFYALQRILYLRQYN--GRVSFVPAPGFENHGEPSTYSEQNIC 322 (484)
Q Consensus 255 ~~~~~~G~~adv~~~sek----~------R~~G~~ry~~~~l~~l~~~r~y~--~~is~~p~~~~~~~~~~~~~~~~~~~ 322 (484)
++.+|+|++|.|..+.++ . |+++.+.|...+++.++..+... .++.
T Consensus 3 ~NYfsiG~DA~ia~~Fh~~R~~~P~~f~sr~~NK~~Y~~~g~k~~~~~~~~~~~~~i~---------------------- 60 (161)
T PF00609_consen 3 NNYFSIGVDAQIALGFHHSREKNPEKFNSRLLNKLWYAFFGFKALFQRSCKNLPKKIE---------------------- 60 (161)
T ss_pred EecccccHhhHHHHHHhhccccChhhhccHHHHHHHHHHHHHHHHHhchhcCchhhcc----------------------
Confidence 356899999999987543 3 45678889888888887322111 0110
Q ss_pred CCCCCCCCcccccccccCCCccccCCCceEEEeecEEEEEEeecccCCCCCccCCC------------CccCCCeEEEEE
Q 011517 323 NPIPSQQQPIKILQHGYQGPDVDLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPD------------AKFSDGYLDLII 390 (484)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~------------a~~~DG~ldlv~ 390 (484)
+..+|.. ..+..+...+.+.|.|+|++|..+.+. ...+||.|+++.
T Consensus 61 --------------l~~dg~~--------~~lp~~~~~iv~lNIpSy~gG~~~W~~~~~~~~~~~~~~~~~~Dg~lEVvg 118 (161)
T PF00609_consen 61 --------------LEVDGKE--------VDLPSSLESIVFLNIPSYGGGVDLWGNSKPDRSKLKFKKQSMDDGKLEVVG 118 (161)
T ss_pred --------------cccCCee--------EeeecceeEEEEEccccccCCcccccCCcccccccccccccccCceEEEEE
Confidence 1111111 123334556789999999999766544 456999999999
Q ss_pred EecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEEEEeCCCCCCCCCCceEEecCCc
Q 011517 391 IKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFILEPGALTQEPNREGIIDCDGEV 448 (484)
Q Consensus 391 i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~i~~~~~~~~~~~~~~~~vDGE~ 448 (484)
+++. +.+.... .|. ...+...+++.++|+..+ ...++|+|||.
T Consensus 119 ~~~~--~hl~~~~----~g~---~~~~rl~Q~~~i~i~~~~------~~~~~QvDGEp 161 (161)
T PF00609_consen 119 FRGS--FHLGQIQ----AGL---SSAKRLAQGRPIRIETKE------NKVPFQVDGEP 161 (161)
T ss_pred EcCc--hhhhhhh----hcc---CCceEeecCCEEEEEECC------CceeEEeCCCC
Confidence 9853 2222222 221 223777889999999863 15789999994
No 25
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=98.35 E-value=2.3e-06 Score=85.37 Aligned_cols=73 Identities=27% Similarity=0.308 Sum_probs=55.8
Q ss_pred CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhh-hhcccccCCCCCHHHH
Q 011517 150 TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI-KSLLDLVGEPCKASNA 228 (484)
Q Consensus 150 ~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A-~sl~~~~g~~~~~~~A 228 (484)
+...+...+++++...+.|.|+.+|||||..+|++++ . .++|+-=||+|+-|... ..+ .|.+....
T Consensus 84 tTa~DT~~~~r~~~~~gVdlIvfaGGDGTarDVa~av--~------~~vPvLGipaGvk~~SgvfA~-----~P~~aa~l 150 (355)
T COG3199 84 TTAEDTINAVRRMVERGVDLIVFAGGDGTARDVAEAV--G------ADVPVLGIPAGVKNYSGVFAL-----SPEDAARL 150 (355)
T ss_pred ccHHHHHHHHHHHHhcCceEEEEeCCCccHHHHHhhc--c------CCCceEeeccccceecccccc-----ChHHHHHH
Confidence 3455667788888877899999999999999999998 2 17899999999999876 333 23333344
Q ss_pred HHHHHhC
Q 011517 229 ILAVIRG 235 (484)
Q Consensus 229 ~~~i~~g 235 (484)
+..+++|
T Consensus 151 ~~~~lkg 157 (355)
T COG3199 151 LGAFLKG 157 (355)
T ss_pred HHHHhcc
Confidence 4567788
No 26
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.14 E-value=0.00023 Score=70.07 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
++.|+.+|. +.+.+ ++++..|.+.|+.+.... ... . ...+.|.||++|||||+-.++..+
T Consensus 2 ~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~~~~--~~~-------~-~~~~~d~vi~iGGDGT~L~a~~~~---- 61 (256)
T PRK14075 2 KLGIFYREE-----KEKEA-KFLKEKISKEHEVVEFCE--ASA-------S-GKVTADLIIVVGGDGTVLKAAKKV---- 61 (256)
T ss_pred EEEEEeCcc-----HHHHH-HHHHHHHHHcCCeeEeec--ccc-------c-ccCCCCEEEEECCcHHHHHHHHHc----
Confidence 566665555 34444 588888988887654432 111 1 124679999999999999888765
Q ss_pred CcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 191 ~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
.+|+--|-+|+-.-++. + .+.+..+++..+.+|...
T Consensus 62 ------~~Pilgin~G~lGfl~~-~-----~~~~~~~~l~~~~~g~~~ 97 (256)
T PRK14075 62 ------GTPLVGFKAGRLGFLSS-Y-----TLEEIDRFLEDLKNWNFR 97 (256)
T ss_pred ------CCCEEEEeCCCCccccc-c-----CHHHHHHHHHHHHcCCcE
Confidence 25665577776433332 1 233566788889998743
No 27
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.11 E-value=1.6e-05 Score=79.76 Aligned_cols=112 Identities=21% Similarity=0.287 Sum_probs=75.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHH--HHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIV--KVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~--~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
.+++.||.||.. ..+.+.+ +++...|++.++++.+..+.. ..++.... ..+ ...+|.||++|||||+.+++
T Consensus 4 ~~~v~iv~~~~k--~~a~e~~-~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 79 (295)
T PRK01231 4 FRNIGLIGRLGS--SSVVETL-RRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLL-GEVCDLVIVVGGDGSLLGAA 79 (295)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-ccCCCEEEEEeCcHHHHHHH
Confidence 457999999865 3455555 578888999999887765432 11111111 122 23689999999999999999
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
+.+... .+|+--|.+|+-. |-..+ .+.+..+++..+.+|..
T Consensus 80 ~~~~~~-------~~Pvlgin~G~lG-Fl~~~-----~~~~~~~~l~~~~~g~~ 120 (295)
T PRK01231 80 RALARH-------NVPVLGINRGRLG-FLTDI-----RPDELEFKLAEVLDGHY 120 (295)
T ss_pred HHhcCC-------CCCEEEEeCCccc-ccccC-----CHHHHHHHHHHHHcCCc
Confidence 988643 6788778888744 33222 23467788899999863
No 28
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=98.04 E-value=1.3e-05 Score=80.30 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=75.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH-HHH--H--HHHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKE--I--VKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~-a~~--l--~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
.+++.++.||.. ..+.+.. +++...|++.|+++.+........ ... . ..++ ..++|.||++|||||+..++
T Consensus 5 ~~~i~iv~~~~~--~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~lGGDGT~L~aa 80 (292)
T PRK03378 5 FKCIGIVGHPRH--PTALTTH-EMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEI-GQQADLAIVVGGDGNMLGAA 80 (292)
T ss_pred CCEEEEEEeCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccchhhc-CCCCCEEEEECCcHHHHHHH
Confidence 467999999853 4555444 688888999998776543211000 000 0 0122 23689999999999999999
Q ss_pred HHHhcCcCcccccCCcEEEecCCCch-hhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGN-GMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN-~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
+.+... .+ .+||.++|| +|...+ . +.++.+++..|.+|..
T Consensus 81 ~~~~~~-------~~--Pilgin~G~lGFl~~~----~-~~~~~~~l~~i~~g~~ 121 (292)
T PRK03378 81 RVLARY-------DI--KVIGINRGNLGFLTDL----D-PDNALQQLSDVLEGHY 121 (292)
T ss_pred HHhcCC-------CC--eEEEEECCCCCccccc----C-HHHHHHHHHHHHcCCc
Confidence 987653 34 468888888 887776 2 4577789999999874
No 29
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=97.88 E-value=5.2e-06 Score=89.71 Aligned_cols=127 Identities=20% Similarity=0.246 Sum_probs=79.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
..++||+|.+||...+.+. .++.+.+|.-..+ ++++- ..+.-+..+.+.++ .-.|+|+||||++..|+..+..-
T Consensus 195 spllv~insksgd~qg~~~-lrkfkq~lnp~qV-fdll~-~gp~~gL~~f~~~d---~friLvcggdGsv~wvls~~ds~ 268 (1099)
T KOG1170|consen 195 SPLLVFINSKSGDSQGQRF-LRKFKQILNPIQV-FDLIA-GGPDFGLTFFSHFE---SFRILVCGGDGSVGWVLSAIDRL 268 (1099)
T ss_pred CceeEeecccCCCchhHHH-HHhhhhhcCHHHH-HHHHc-cCcchhhhhhhccc---ceEEEEecCCCCCcchHHHHHhc
Confidence 4699999999999998864 3566666654432 12211 22222222222221 22799999999999998876543
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCC--HHHHHHHHHhCceeeeeEEEE
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCK--ASNAILAVIRGHKRLLDVATI 245 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~--~~~A~~~i~~g~~~~lDl~~V 245 (484)
.- -.+.-++++|.||||++|+.++|+...+.+ ....+...-+..++.||=.+|
T Consensus 269 ~l---h~kcql~vlplgtgndlarvlgwg~a~~ddt~~p~il~~~eRastkmldrwsv 323 (1099)
T KOG1170|consen 269 NL---HSKCQLAVLPLGTGNDLARVLGWGHAFYDDTLLPQILRTMERASTKMLDRWSV 323 (1099)
T ss_pred cc---hhhcccccccCCChHHHHHHhcccccCchhhccHHHHHHHHhhhhhhhhcchh
Confidence 21 136889999999999999999885333222 113334444556666665554
No 30
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=97.71 E-value=3.8e-05 Score=76.91 Aligned_cols=113 Identities=18% Similarity=0.281 Sum_probs=74.8
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCChh----------------------HHHHHHHHhhcCCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQL----------------------HAKEIVKVLDLSKY 167 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~~~----------------------~a~~l~~~~~~~~~ 167 (484)
|+.||.||. +..+.+.. +++...|.+. ++.+.+...-... .......+...+++
T Consensus 1 kVgii~np~--~~~~~~~~-~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (285)
T PF01513_consen 1 KVGIIANPN--KPEAIELA-NELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGV 77 (285)
T ss_dssp -EEEEESSC--GHCCCHHH-HHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCS
T ss_pred CEEEEEcCC--CHHHHHHH-HHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCC
Confidence 578999998 33455444 5788888888 5544332110000 00111233345789
Q ss_pred ceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceee
Q 011517 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRL 239 (484)
Q Consensus 168 d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~ 239 (484)
|.||++|||||+-.++..+... .+||--|+.|+-|-|+. + .+.+...++..+.+|....
T Consensus 78 D~ii~lGGDGT~L~~~~~~~~~-------~~Pilgin~G~lgfl~~-~-----~~~~~~~~l~~~~~g~~~~ 136 (285)
T PF01513_consen 78 DLIIVLGGDGTFLRAARLFGDY-------DIPILGINTGTLGFLTE-F-----EPEDIEEALEKILAGEYSI 136 (285)
T ss_dssp SEEEEEESHHHHHHHHHHCTTS-------T-EEEEEESSSSTSSSS-E-----EGCGHHHHHHHHHHTHCEE
T ss_pred CEEEEECCCHHHHHHHHHhccC-------CCcEEeecCCCcccccc-C-----CHHHHHHHHHHHhcCCeEE
Confidence 9999999999999999988764 68999999999655543 2 2447888889999987543
No 31
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.70 E-value=0.00017 Score=72.71 Aligned_cols=115 Identities=17% Similarity=0.146 Sum_probs=78.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH---HHH-----------HHHhhcCCCceEEE
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA---KEI-----------VKVLDLSKYDGIVC 172 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a---~~l-----------~~~~~~~~~d~IV~ 172 (484)
.+++++.++.||. +..+.+.. +++...|...|+++.+.......-. ... ...+ ..+.|.||+
T Consensus 3 ~~~~~I~iv~~~~--~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi~ 78 (306)
T PRK03372 3 TASRRVLLVAHTG--RDEATEAA-RRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDA-ADGCELVLV 78 (306)
T ss_pred CCccEEEEEecCC--CHHHHHHH-HHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhc-ccCCCEEEE
Confidence 4678899999984 34555544 6888889999988776543211000 000 0111 235899999
Q ss_pred EcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 173 vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
+|||||+-.++..+... .+||--|..|+-.=|+.. .+.+..+++..+.+|...
T Consensus 79 lGGDGT~L~aar~~~~~-------~~PilGIN~G~lGFL~~~------~~~~~~~~l~~i~~g~y~ 131 (306)
T PRK03372 79 LGGDGTILRAAELARAA-------DVPVLGVNLGHVGFLAEA------EAEDLDEAVERVVDRDYR 131 (306)
T ss_pred EcCCHHHHHHHHHhccC-------CCcEEEEecCCCceeccC------CHHHHHHHHHHHHcCCce
Confidence 99999999999887654 678888999986555442 245677889999999743
No 32
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=97.64 E-value=0.00032 Score=70.42 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=74.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HHHH---HH-HHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKE---IV-KVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~---l~-~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
.+++.++.|+.. ..+.+.. +.+...|+..++++.+....... ++.+ .. +++ ...+|.||++|||||+.+++
T Consensus 5 ~~~v~iv~~~~~--~~~~e~~-~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~GGDGt~l~~~ 80 (291)
T PRK02155 5 FKTVALIGRYQT--PGIAEPL-ESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEI-GARADLAVVLGGDGTMLGIG 80 (291)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCcccccccChhHh-ccCCCEEEEECCcHHHHHHH
Confidence 467889988854 4555544 57888898899886664332210 1100 01 222 23689999999999999999
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
+.+... ++|+-=|.+|+-.=++. + .+.+..+++..+.+|..+
T Consensus 81 ~~~~~~-------~~pilGIn~G~lGFL~~-~-----~~~~~~~~l~~~~~g~~~ 122 (291)
T PRK02155 81 RQLAPY-------GVPLIGINHGRLGFITD-I-----PLDDMQETLPPMLAGNYE 122 (291)
T ss_pred HHhcCC-------CCCEEEEcCCCcccccc-C-----CHHHHHHHHHHHHcCCce
Confidence 998654 56777788887544442 2 234567788899998753
No 33
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.42 E-value=0.0021 Score=70.58 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHH-HHH----Hh
Q 011517 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE-IVK----VL 162 (484)
Q Consensus 88 ~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~-l~~----~~ 162 (484)
+.+..+...+.|++. ...+|+++.|+.||. +..+.+.. +++...|...++++.+...... ...+ +.. ..
T Consensus 271 ~~~l~~~l~~~l~~~--w~~~~~~i~iv~~~~--~~~~~~~~-~~i~~~l~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~ 344 (569)
T PRK14076 271 NEILHKKLVGIFGNK--WRIKPTKFGIVSRID--NEEAINLA-LKIIKYLDSKGIPYELESFLYN-KLKNRLNEECNLID 344 (569)
T ss_pred CHHHHHHHHHhhhhh--cccCCcEEEEEcCCC--CHHHHHHH-HHHHHHHHHCCCEEEEechhhh-hhcccccccccccc
Confidence 444444444444333 236899999999984 44555544 5888888888887766432110 0000 000 01
Q ss_pred hcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 163 DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 163 ~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
+..+.|.||++|||||+-.++.-+... .+||-=|-+|+-.=|+. + .+.+..+++..+.+|..
T Consensus 345 ~~~~~dlvi~lGGDGT~L~aa~~~~~~-------~~PilGin~G~lGFL~~-~-----~~~~~~~~l~~~~~g~~ 406 (569)
T PRK14076 345 DIEEISHIISIGGDGTVLRASKLVNGE-------EIPIICINMGTVGFLTE-F-----SKEEIFKAIDSIISGEY 406 (569)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhcCC-------CCCEEEEcCCCCCcCcc-c-----CHHHHHHHHHHHHcCCc
Confidence 123679999999999999999876543 57887788898555442 2 23467788899999974
No 34
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.33 E-value=0.0015 Score=65.60 Aligned_cols=112 Identities=15% Similarity=0.166 Sum_probs=73.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
.+++.+|.||.. ..+.+.. +++...|.+.|+++.+...... ++...-..++. ...|.||++|||||
T Consensus 5 ~~~i~ii~~~~~--~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~vi~lGGDGT 80 (296)
T PRK04539 5 FHNIGIVTRPNT--PDIQDTA-HTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELG-QYCDLVAVLGGDGT 80 (296)
T ss_pred CCEEEEEecCCC--HHHHHHH-HHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcC-cCCCEEEEECCcHH
Confidence 577999999854 4555544 6888889999988776432111 11000001221 35899999999999
Q ss_pred HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 179 l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
+-.++..+... .+||-=|-.|+-.=|+. + .+.+..+++..+++|+.
T Consensus 81 ~L~aa~~~~~~-------~~PilGIN~G~lGFL~~-~-----~~~~~~~~l~~i~~g~~ 126 (296)
T PRK04539 81 FLSVAREIAPR-------AVPIIGINQGHLGFLTQ-I-----PREYMTDKLLPVLEGKY 126 (296)
T ss_pred HHHHHHHhccc-------CCCEEEEecCCCeEeec-c-----CHHHHHHHHHHHHcCCc
Confidence 99999887654 57877777886333332 1 23456778889999864
No 35
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.33 E-value=0.0025 Score=62.94 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=65.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+++.++.|+.. .+.++. ++++..|++.|+++.+. ..+.|.||++|||||+-.+++.+...
T Consensus 3 ~~i~iv~~~~~---~a~~~~-~~l~~~l~~~g~~~~~~----------------~~~~D~vi~lGGDGT~L~a~~~~~~~ 62 (264)
T PRK03501 3 RNLFFFYKRDK---ELVEKV-KPLKKIAEEYGFTVVDH----------------PKNANIIVSIGGDGTFLQAVRKTGFR 62 (264)
T ss_pred cEEEEEECCCH---HHHHHH-HHHHHHHHHCCCEEEcC----------------CCCccEEEEECCcHHHHHHHHHhccc
Confidence 36788888765 555544 68888999999866431 13579999999999999998876543
Q ss_pred cCcccccCCcEEEecC-CCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 190 EDWNDAIKVPLGVVPA-GTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~-GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
. .+|+--|.. |+-.=++. + .+.+..+++..+.+|..
T Consensus 63 ~------~~pilgIn~~G~lGFL~~-~-----~~~~~~~~l~~i~~g~~ 99 (264)
T PRK03501 63 E------DCLYAGISTKDQLGFYCD-F-----HIDDLDKMIQAITKEEI 99 (264)
T ss_pred C------CCeEEeEecCCCCeEccc-C-----CHHHHHHHHHHHHcCCc
Confidence 1 457544566 65444432 1 23466788889999874
No 36
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.32 E-value=0.00088 Score=67.04 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=72.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh--HHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~--~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.++.||. + .+.+.. +++...|++.|+++.+....... ....-..++ ..++|.||++|||||+-.+++-
T Consensus 9 ~~~~i~ii~~~~--~-~~~~~~-~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~Dlvi~iGGDGT~L~aa~~ 83 (287)
T PRK14077 9 NIKKIGLVTRPN--V-SLDKEI-LKLQKILSIYKVEILLEKESAEILDLPGYGLDEL-FKISDFLISLGGDGTLISLCRK 83 (287)
T ss_pred cCCEEEEEeCCc--H-HHHHHH-HHHHHHHHHCCCEEEEecchhhhhcccccchhhc-ccCCCEEEEECCCHHHHHHHHH
Confidence 467899999996 4 666544 68888899999877664321100 000000122 1368999999999999998887
Q ss_pred HhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCc
Q 011517 186 LLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 236 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~ 236 (484)
+... .+||--|-+|+-.=|+. + .+.+...++..+.+|.
T Consensus 84 ~~~~-------~~PilGIN~G~lGFLt~-~-----~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 84 AAEY-------DKFVLGIHAGHLGFLTD-I-----TVDEAEKFFQAFFQGE 121 (287)
T ss_pred hcCC-------CCcEEEEeCCCcccCCc-C-----CHHHHHHHHHHHHcCC
Confidence 7654 57776677776333332 1 2346677888999986
No 37
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.31 E-value=0.001 Score=67.04 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=72.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh--hHHH--------H----HHHHhhcCCCceEEEEcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAK--------E----IVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~--~~a~--------~----l~~~~~~~~~d~IV~vGG 175 (484)
+++.++.||. +..+.+.. +++...|++.|+++.+...... ++.. + -...+. .+.|.+|++||
T Consensus 2 ~~igiv~n~~--~~~~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Dlvi~iGG 77 (305)
T PRK02649 2 PKAGIIYNDG--KPLAVRTA-EELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD-SSMKFAIVLGG 77 (305)
T ss_pred CEEEEEEcCC--CHHHHHHH-HHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc-cCcCEEEEEeC
Confidence 5689999983 44565554 5888889999988766432110 0000 0 001221 35899999999
Q ss_pred CChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 176 DGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 176 DGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
|||+-.++.-+... .+||--|-+|+=.=|+.. .+.+..+++..+++|..
T Consensus 78 DGTlL~aar~~~~~-------~iPilGIN~G~lGFLt~~------~~~~~~~~l~~l~~g~y 126 (305)
T PRK02649 78 DGTVLSAARQLAPC-------GIPLLTINTGHLGFLTEA------YLNQLDEAIDQVLAGQY 126 (305)
T ss_pred cHHHHHHHHHhcCC-------CCcEEEEeCCCCcccccC------CHHHHHHHHHHHHcCCc
Confidence 99999999887654 577777778864433321 23467788899999974
No 38
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.18 E-value=0.0016 Score=65.25 Aligned_cols=110 Identities=15% Similarity=0.271 Sum_probs=70.9
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HH-------H-HH--HHHhhcCCCceEEEEcCCChH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HA-------K-EI--VKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a-------~-~l--~~~~~~~~~d~IV~vGGDGtl 179 (484)
++.++.||. +..+.+.. +++...|++.|+++.+....... .. . .. ..++. ..+|.||++|||||+
T Consensus 2 ~igii~~~~--~~~~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlvi~lGGDGT~ 77 (292)
T PRK01911 2 KIAIFGQTY--QESASPYI-QELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELD-GSADMVISIGGDGTF 77 (292)
T ss_pred EEEEEeCCC--CHHHHHHH-HHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcc-cCCCEEEEECCcHHH
Confidence 578888884 34555444 68888899999887664321100 00 0 00 01221 358999999999999
Q ss_pred HHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 180 ~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
-.++.-+... ++||-=|-.|+-.=|+ .+ .+.+...++..+.+|..
T Consensus 78 L~aa~~~~~~-------~~PilGIN~G~lGFLt-~~-----~~~~~~~~l~~i~~g~~ 122 (292)
T PRK01911 78 LRTATYVGNS-------NIPILGINTGRLGFLA-TV-----SKEEIEETIDELLNGDY 122 (292)
T ss_pred HHHHHHhcCC-------CCCEEEEecCCCCccc-cc-----CHHHHHHHHHHHHcCCc
Confidence 9999887654 5787667888743222 22 24466788899999974
No 39
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=97.09 E-value=0.0022 Score=68.03 Aligned_cols=116 Identities=14% Similarity=0.219 Sum_probs=73.0
Q ss_pred hcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHH-hcCCeEEEEecCCh---------hHHH-----HHHHHhhcCCCce
Q 011517 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQ---------LHAK-----EIVKVLDLSKYDG 169 (484)
Q Consensus 105 ~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~-~ag~~~~v~~T~~~---------~~a~-----~l~~~~~~~~~d~ 169 (484)
+...|++++||.||.. ..+.++. .++...|. ..|+++.+...... +... +-..++. .++|.
T Consensus 190 w~~~p~~VgIV~n~~k--~~a~el~-~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~Dl 265 (508)
T PLN02935 190 WESDPQTVLIITKPNS--TSVRVLC-AEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLH-TKVDL 265 (508)
T ss_pred ecCCCCEEEEEecCCC--HHHHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcc-cCCCE
Confidence 4467999999999954 4455444 57777777 47776655321110 0000 0001111 36899
Q ss_pred EEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 170 IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
||++|||||+-.++.-+... .+||--|..|+--=|+ .+ .+.+...++..|++|..
T Consensus 266 VIsiGGDGTlL~Aar~~~~~-------~iPILGIN~G~LGFLt-~i-----~~~e~~~~Le~il~G~y 320 (508)
T PLN02935 266 VITLGGDGTVLWAASMFKGP-------VPPVVPFSMGSLGFMT-PF-----HSEQYRDCLDAILKGPI 320 (508)
T ss_pred EEEECCcHHHHHHHHHhccC-------CCcEEEEeCCCcceec-cc-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999877543 5677667777633332 22 24467788899999874
No 40
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=97.09 E-value=0.003 Score=62.51 Aligned_cols=95 Identities=18% Similarity=0.239 Sum_probs=66.7
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
++.++.|+ +.++.++. ++++..|+..|++++ ..++|.||++|||||+-.++..+....
T Consensus 2 ~i~Ii~~~---~~~~~~~~-~~l~~~l~~~g~~~~------------------~~~~Dlvi~iGGDGT~L~a~~~~~~~~ 59 (265)
T PRK04885 2 KVAIISNG---DPKSKRVA-SKLKKYLKDFGFILD------------------EKNPDIVISVGGDGTLLSAFHRYENQL 59 (265)
T ss_pred EEEEEeCC---CHHHHHHH-HHHHHHHHHcCCccC------------------CcCCCEEEEECCcHHHHHHHHHhcccC
Confidence 47777773 45566554 688888988887631 136799999999999999998876521
Q ss_pred CcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 191 ~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
.++|+-=|.+|+-.=++ .+ .+.+..+++..|.+|...
T Consensus 60 -----~~iPilGIN~G~lGFL~-~~-----~~~~~~~~l~~i~~g~y~ 96 (265)
T PRK04885 60 -----DKVRFVGVHTGHLGFYT-DW-----RPFEVDKLVIALAKDPGQ 96 (265)
T ss_pred -----CCCeEEEEeCCCceecc-cC-----CHHHHHHHHHHHHcCCce
Confidence 15787778888744444 32 244677888999999743
No 41
>PLN02727 NAD kinase
Probab=96.81 E-value=0.0067 Score=68.26 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=73.4
Q ss_pred hcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCChhHHH-HH-------------HHHhhcCCCce
Q 011517 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAK-EI-------------VKVLDLSKYDG 169 (484)
Q Consensus 105 ~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~~~~a~-~l-------------~~~~~~~~~d~ 169 (484)
+..++++++||-+|.. .+.+.. .++...|... |+++-+. +...+.. .. ..++. .+.|.
T Consensus 674 W~~p~rtVgIV~K~~~---ea~~~~-~eL~~~L~~~~gi~V~VE--~~~a~~l~~~~~~~~~~~~~~~~~~el~-~~~DL 746 (986)
T PLN02727 674 WKSTPKTVLLLKKLGQ---ELMEEA-KEVASFLYHQEKMNVLVE--PDVHDIFARIPGFGFVQTFYSQDTSDLH-ERVDF 746 (986)
T ss_pred cCCCCCEEEEEcCCcH---HHHHHH-HHHHHHHHhCCCeEEEEe--cchHHHhhccccccccceecccchhhcc-cCCCE
Confidence 4467999999999975 455444 5778888876 7765443 2211111 00 01111 36899
Q ss_pred EEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 170 IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 170 IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
||++|||||+-.+++-+... .+||-=|-.|+--=|+. + .+.+..+++..|++|..
T Consensus 747 VIvLGGDGTlLrAar~~~~~-------~iPILGINlGrLGFLTd-i-----~~ee~~~~L~~Il~G~y 801 (986)
T PLN02727 747 VACLGGDGVILHASNLFRGA-------VPPVVSFNLGSLGFLTS-H-----YFEDFRQDLRQVIHGNN 801 (986)
T ss_pred EEEECCcHHHHHHHHHhcCC-------CCCEEEEeCCCcccccc-C-----CHHHHHHHHHHHHcCCc
Confidence 99999999999999887553 57877788886433332 1 23355678888888874
No 42
>PLN02929 NADH kinase
Probab=96.43 E-value=0.015 Score=58.28 Aligned_cols=96 Identities=18% Similarity=0.251 Sum_probs=59.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
..+.++..|+++|+++..+. +. ++ ++ ...+.|.||++|||||+-.+++.+ .. .+||-=|-.|..
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~--r~----~~-~~-~~~~~Dlvi~lGGDGT~L~aa~~~-~~-------~iPvlGIN~Gp~ 98 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVL--RN----EL-SQ-PIRDVDLVVAVGGDGTLLQASHFL-DD-------SIPVLGVNSDPT 98 (301)
T ss_pred HHHHHHHHHHHcCCEEEEee--cc----cc-cc-ccCCCCEEEEECCcHHHHHHHHHc-CC-------CCcEEEEECCCc
Confidence 34688999999999875443 21 11 12 235789999999999999988877 43 466544666631
Q ss_pred ---------hhhh--hhcccccC-CCCCHHHHHHHHHhCceeee
Q 011517 209 ---------NGMI--KSLLDLVG-EPCKASNAILAVIRGHKRLL 240 (484)
Q Consensus 209 ---------N~~A--~sl~~~~g-~~~~~~~A~~~i~~g~~~~l 240 (484)
|.|- +++++-.. .+.+..+++..+++|....-
T Consensus 99 ~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~~ 142 (301)
T PLN02929 99 QKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKPT 142 (301)
T ss_pred ccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceEE
Confidence 2221 12221111 23466778899999975433
No 43
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.35 E-value=0.053 Score=53.44 Aligned_cols=99 Identities=12% Similarity=0.079 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
|+.+|-||.. ++.+ +.++++..++..++ ..+++|.||++|||||+-.++.-+...
T Consensus 2 ~~~i~~~~~~---~s~~-~~~~l~~~~~~~~~--------------------~~~~~D~vi~iGGDGT~L~a~~~~~~~- 56 (259)
T PRK00561 2 KYKIFASTTP---QTEP-VLPKLKKVLKKKLA--------------------VEDGADYLFVLGGDGFFVSTAANYNCA- 56 (259)
T ss_pred EEEEEeCCCH---HHHH-HHHHHHHHHhhCCC--------------------ccCCCCEEEEECCcHHHHHHHHHhcCC-
Confidence 5778887763 3332 23455555553321 125689999999999999988877543
Q ss_pred CcccccCCcEEEecCCCchhhhhhcccccCCCCCHHH-HHHHHHhCceeeeeEEEEE
Q 011517 191 DWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASN-AILAVIRGHKRLLDVATIL 246 (484)
Q Consensus 191 ~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~-A~~~i~~g~~~~lDl~~V~ 246 (484)
.+|+--|-+|+-.=++. + .+.+..+ ++..+.+.......+.++.
T Consensus 57 ------~iPilGIN~G~lGFL~~-~-----~~~~~~~~~~~~l~~~~~~~r~~L~~~ 101 (259)
T PRK00561 57 ------GCKVVGINTGHLGFYTS-F-----NETDLDQNFANKLDQLKFTQIDLLEVQ 101 (259)
T ss_pred ------CCcEEEEecCCCccccc-c-----CHHHHHHHHHHHHhhCCeEEEEEEEEE
Confidence 67887788886433332 1 2234445 4445544444444444444
No 44
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.34 E-value=0.031 Score=55.55 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=62.0
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHH-HHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV-KVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~-~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
++.++.||. +..+.+.. +++...| ..|+++.+.. ......... ......+.|.||++|||||+-.+++.+
T Consensus 2 ~i~iv~~~~--~~~~~~~~-~~i~~~l-~~g~~~~~~~--~~~~~~~~~~~~~~~~~~D~vi~lGGDGT~L~a~~~~--- 72 (271)
T PRK01185 2 KVAFVIRKD--CKRCIKIA-KSIIELL-PPDWEIIYEM--EAAKALGMDGLDIEEINADVIITIGGDGTILRTLQRA--- 72 (271)
T ss_pred EEEEEecCC--CHHHHHHH-HHHHHHH-hcCCEEEEec--hhhhhcCcccCcccccCCCEEEEEcCcHHHHHHHHHc---
Confidence 578888874 34555444 5777767 4677654432 111110000 011112689999999999998777643
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
..||--|-.|+=.-++ .+ .+.+...++..+.+|..
T Consensus 73 -------~~PilGIN~G~lGFL~-~~-----~~~~~~~~l~~i~~g~~ 107 (271)
T PRK01185 73 -------KGPILGINMGGLGFLT-EI-----EIDEVGSAIKKLIRGEY 107 (271)
T ss_pred -------CCCEEEEECCCCccCc-cc-----CHHHHHHHHHHHHcCCc
Confidence 1366556788754444 22 23466788899999863
No 45
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=96.28 E-value=0.011 Score=64.69 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=55.0
Q ss_pred EEEeecccCCCCCcc---------CCCCccCCCeEEEEEEecCCHHHHHHHH-HhhccCCCCcCCcEEEEEEEEEEEEeC
Q 011517 361 VWLHNVPWGSENTMA---------APDAKFSDGYLDLIIIKDCPKLALFSLL-SNLNKGGHVESPYVAYLKVKAFILEPG 430 (484)
Q Consensus 361 v~~~N~~~~g~~~~~---------aP~a~~~DG~ldlv~i~~~s~~~ll~~l-~~~~~G~~~~~p~V~~~kv~a~~i~~~ 430 (484)
+.+-|.|.|.+|.+| +-.-.++|+.|.+|-+=.. +.+. .++.. .-+=..-+|+.++|.-.
T Consensus 689 IviLNIpSyaGGtNFWGsnk~dd~f~apSfDDriLEVVAvFGs-----vqMA~SRvI~-----LqhHRIAQCr~V~I~Il 758 (1099)
T KOG1170|consen 689 IVILNIPSYAGGTNFWGSNKDDDEFTAPSFDDRILEVVAVFGS-----VQMATSRVIR-----LQHHRIAQCRHVRIVIL 758 (1099)
T ss_pred eEEEecccccCcccccCCCCCCCcccCCCcccceeEEeeeehh-----HHHHHHHHHH-----hhhhhhhhceEEEEEEe
Confidence 567788888777653 3334679999999977531 1111 11211 11222346777888765
Q ss_pred CCCCCCCCCceEEecCCccccCCceeeecCC
Q 011517 431 ALTQEPNREGIIDCDGEVLARGKGTYQCDQK 461 (484)
Q Consensus 431 ~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~ 461 (484)
. +.+.++|+|||..-+.|+-+++.++
T Consensus 759 G-----DE~IPVQvDGEaWlQPPG~irIvHK 784 (1099)
T KOG1170|consen 759 G-----DEGIPVQVDGEAWLQPPGIIRIVHK 784 (1099)
T ss_pred c-----CCCCceeecCccccCCCceeeeehh
Confidence 3 4578899999999888888876553
No 46
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=96.02 E-value=0.022 Score=58.93 Aligned_cols=68 Identities=26% Similarity=0.574 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHh----hhhcCCCcEEEEEEcCCCCCc--chhhchHHhHHHHHHhcCCeEEEEecCChhHHHH
Q 011517 90 DSKRLWCEKLRDF----IDSFGRPKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (484)
Q Consensus 90 ~~~~~w~~~l~~~----~~~~~~~~r~lviiNP~sG~~--~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~ 157 (484)
...+.|++.+.-+ |.....||++.|++.|--|.+ .|.+.|.+.|+|+|.++|++|+++...++|+.+.
T Consensus 44 ri~~k~~~~V~~la~epl~~~~~PRKlTVy~a~pPgD~l~~a~~~Fr~YVKPIL~AaglDyevv~g~rqGdIr~ 117 (382)
T PF11711_consen 44 RIRQKWCDKVKHLAEEPLPPDELPRKLTVYIAPPPGDGLDVARKYFREYVKPILVAAGLDYEVVEGRRQGDIRA 117 (382)
T ss_pred HHHHHHHHHHHHHhhCCCCCCCCCceEEEEeeCCCCccHHHHHHHHHHHHHHHHHhhccceEEeccccccHHHH
Confidence 3567898887555 344578999999999998877 6888999999999999999999999999998764
No 47
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=95.54 E-value=0.07 Score=52.37 Aligned_cols=103 Identities=19% Similarity=0.330 Sum_probs=65.2
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 99 l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+.+.+... ..++++|+..+.. .+.+.++++..|+.+|+++.++. .-...++.++.+.+...++|.||.+|
T Consensus 10 l~~~l~~~-~~~~~lvv~d~~t-----~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vG 83 (250)
T PF13685_consen 10 LPEILSEL-GLKKVLVVTDENT-----YKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVG 83 (250)
T ss_dssp HHHHHGGG-T-SEEEEEEETTH-----HHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEE
T ss_pred HHHHHHhc-CCCcEEEEEcCCH-----HHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeC
Confidence 33444444 3478999987753 23455789999999999987653 33334455566666446889999998
Q ss_pred CCChHHHHHHHHhcCcCcccccCCcEEEecC-CCchhhhhh
Q 011517 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPA-GTGNGMIKS 214 (484)
Q Consensus 175 GDGtl~evingL~~~~~~~~~~~~pigiIP~-GSgN~~A~s 214 (484)
| ||++++..-...+ .++|+-.+|. =|.|+++..
T Consensus 84 g-G~i~D~~K~~A~~------~~~p~isVPTa~S~DG~aS~ 117 (250)
T PF13685_consen 84 G-GTIIDIAKYAAFE------LGIPFISVPTAASHDGFASP 117 (250)
T ss_dssp S-HHHHHHHHHHHHH------HT--EEEEES--SSGGGTSS
T ss_pred C-cHHHHHHHHHHHh------cCCCEEEeccccccccccCC
Confidence 8 9999998877654 3789999998 566666654
No 48
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=95.01 E-value=0.15 Score=49.95 Aligned_cols=61 Identities=16% Similarity=0.234 Sum_probs=39.8
Q ss_pred cCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCc
Q 011517 164 LSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGH 236 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~ 236 (484)
..++|.||++|||||+-.+++-+... .+|+--|-+|+-.=++... .+.+...++..+..+.
T Consensus 23 ~~~~Dlvi~iGGDGTlL~a~~~~~~~-------~~PvlGIN~G~lGFL~~~~-----~~~e~~~~l~~~~~~~ 83 (246)
T PRK04761 23 IEEADVIVALGGDGFMLQTLHRYMNS-------GKPVYGMNRGSVGFLMNEY-----SEDDLLERIAAAEPTV 83 (246)
T ss_pred cccCCEEEEECCCHHHHHHHHHhcCC-------CCeEEEEeCCCCCcccCCC-----CHHHHHHHHHHhhcCc
Confidence 35689999999999999999887654 5787668888643333211 1223444555555553
No 49
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=94.99 E-value=0.023 Score=56.50 Aligned_cols=97 Identities=18% Similarity=0.276 Sum_probs=68.5
Q ss_pred hhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe--
Q 011517 126 SKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV-- 203 (484)
Q Consensus 126 ~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI-- 203 (484)
.+.+.+.+...|..+|++-.++.-. .+.+. ....|.||.+|||||+--+..-+... ..+-||+=
T Consensus 73 hkn~~~~~~~~l~k~giesklv~R~------~lsq~--i~waD~VisvGGDGTfL~Aasrv~~~------~~PViGvNtD 138 (395)
T KOG4180|consen 73 HKNAIKFCQEELSKAGIESKLVSRN------DLSQP--IRWADMVISVGGDGTFLLAASRVIDD------SKPVIGVNTD 138 (395)
T ss_pred HHHHHHHHHHHHhhCCcceeeeehh------hccCc--CchhhEEEEecCccceeehhhhhhcc------CCceeeecCC
Confidence 4457788999999999986654321 23333 34569999999999998777666554 25566664
Q ss_pred cCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeee
Q 011517 204 PAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLL 240 (484)
Q Consensus 204 P~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~l 240 (484)
|.||---++-.- ..|.++..|+..+..|.-..+
T Consensus 139 P~~Seg~lcL~~----~~~~n~~~al~k~~sgnF~wv 171 (395)
T KOG4180|consen 139 PTGSEGHLCLPD----KYPSNPAGALCKLTSGNFEWV 171 (395)
T ss_pred CCcCcceEeccc----cCCCCcHHHHHHHHhccHHHh
Confidence 777777666553 556678899999999976544
No 50
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.89 E-value=0.08 Score=52.64 Aligned_cols=92 Identities=15% Similarity=0.250 Sum_probs=55.3
Q ss_pred HhHHHHHHhcCCeEEEEecCCh--hHHHH---HHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ--LHAKE---IVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~--~~a~~---l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+++...|++.|+++.+...... ++... -.+++. .++|.||++|||||+-.++..+... ++|+--|-+
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~iGGDGT~L~aa~~~~~~-------~~PilgIn~ 74 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIG-QRAQLAIVIGGDGNMLGRARVLAKY-------DIPLIGINR 74 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhC-cCCCEEEEECCcHHHHHHHHHhccC-------CCcEEEEeC
Confidence 3566678888887766432110 10000 002222 3689999999999999998877654 577666788
Q ss_pred CCchhhhhhcccccCCCCCHHHHHHHHHh-Cc
Q 011517 206 GTGNGMIKSLLDLVGEPCKASNAILAVIR-GH 236 (484)
Q Consensus 206 GSgN~~A~sl~~~~g~~~~~~~A~~~i~~-g~ 236 (484)
|+-.=|+. + .+.+..+++..+++ |.
T Consensus 75 G~lGFL~~-~-----~~~~~~~~l~~~~~~g~ 100 (272)
T PRK02231 75 GNLGFLTD-I-----DPKNAYEQLEACLERGE 100 (272)
T ss_pred CCCccccc-C-----CHHHHHHHHHHHHhcCC
Confidence 87443332 1 23345566777777 75
No 51
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=94.63 E-value=0.34 Score=50.60 Aligned_cols=100 Identities=19% Similarity=0.309 Sum_probs=63.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cC---ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT---QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-+..+ .+ +++...|+.+|+++.++. .+ ......++++.+...++|.||.+|| |++.++.-.
T Consensus 27 kr~livtd~~~~~~~g--~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSG--AW-DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGG-GSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcC--hH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 7899998776543221 23 588999999999887763 11 2344556666666568899999999 555555433
Q ss_pred H---hcCcCc----------ccccCCcEEEecC--CCchhhhh
Q 011517 186 L---LEREDW----------NDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 186 L---~~~~~~----------~~~~~~pigiIP~--GSgN~~A~ 213 (484)
+ +..+.. .....+|+..||. |||--+..
T Consensus 103 ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGSE~t~ 145 (383)
T cd08186 103 AAILLEHPGKTARDLYEFKFTPEKALPLIAINLTHGTGTEVDR 145 (383)
T ss_pred HHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCCChhhhhhCC
Confidence 3 222110 0112579999998 77665544
No 52
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=94.50 E-value=0.39 Score=50.03 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ ...+ ++++..|+.+++++.++.- -......++++.+...++|.||.+|| |++.++...
T Consensus 29 ~~~lvv~~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVK---IGVV-EKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGG-GSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhh---cCcH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 6788887654422 1233 6899999999998876521 12233455666665568999999998 566555444
Q ss_pred Hh---cCcC---------cccccCCcEEEecC--CCchhh
Q 011517 186 LL---ERED---------WNDAIKVPLGVVPA--GTGNGM 211 (484)
Q Consensus 186 L~---~~~~---------~~~~~~~pigiIP~--GSgN~~ 211 (484)
+. ..+. ......+|+..||. |||--.
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTtagTgSe~ 143 (377)
T cd08176 104 IGIVATNGGDIRDYEGVAKSKKPAVPIVAINTTAGTASEV 143 (377)
T ss_pred HHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCCCcchhcc
Confidence 32 1110 00113589999997 665544
No 53
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=94.11 E-value=0.42 Score=48.94 Aligned_cols=88 Identities=18% Similarity=0.252 Sum_probs=60.8
Q ss_pred cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-----ChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 106 FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-----QQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 106 ~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-----~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
.+..+|++|+..+..-+ .+.+++...|+.+++++.++..+ ......++++.+.. +.|.||.+|| |++.
T Consensus 21 ~~~~~kvlivtd~~~~~-----~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 21 IGVNSKIMIVCGNNTYK-----VAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGS-GTII 93 (332)
T ss_pred cCCCCcEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECC-cHHH
Confidence 33346899998776532 23468899999999877664322 23445566666655 8999999998 7888
Q ss_pred HHHHHHhcCcCcccccCCcEEEecCC
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~G 206 (484)
++.-.+.-. ..+|+-.||.=
T Consensus 94 D~aK~iA~~------~gip~I~VPTT 113 (332)
T cd08549 94 DLVKFVSFK------VGKPFISVPTA 113 (332)
T ss_pred HHHHHHHHH------cCCCEEEeCCC
Confidence 877665422 26899999974
No 54
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=93.95 E-value=0.69 Score=48.29 Aligned_cols=97 Identities=20% Similarity=0.306 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ .. +.+++...|+++|+++.++. ... .....+.++.+...++|.||.+|| |++-++...
T Consensus 31 ~~~lvvtd~~~~~---~g-~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVK---CG-VVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG-GSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhh---Cc-chHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 6888888764322 11 33689999999999887762 112 234455555555568999999998 566555543
Q ss_pred ---HhcCcC----c-------ccccCCcEEEecC--CCchhh
Q 011517 186 ---LLERED----W-------NDAIKVPLGVVPA--GTGNGM 211 (484)
Q Consensus 186 ---L~~~~~----~-------~~~~~~pigiIP~--GSgN~~ 211 (484)
+...++ | .....+|+..||. |||--.
T Consensus 106 ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTagTGse~ 147 (382)
T PRK10624 106 IGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTAGTAAEV 147 (382)
T ss_pred HHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCCchhhhh
Confidence 222211 0 0113589999997 555433
No 55
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=93.95 E-value=0.77 Score=47.49 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=56.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe------cCChhHHHHHHHHhhcCCCc---eEEEEcCCChHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSKYD---GIVCVSGDGILV 180 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~~d---~IV~vGGDGtl~ 180 (484)
+|++|+..+.-. +.+.+++...|+.+|+++.++. ......+.++++.+...+.| .||++|| |++.
T Consensus 24 ~rvlvVtd~~v~-----~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGG-Gsv~ 97 (355)
T cd08197 24 DKYLLVTDSNVE-----DLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGG-GVVG 97 (355)
T ss_pred CeEEEEECccHH-----HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 689999886532 2355789999999988765432 12334455555555444555 8888886 7888
Q ss_pred HHHHHHhcCcCcccccCCcEEEecC
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++.-.+.... ...+|+..||.
T Consensus 98 D~ak~~A~~~----~rgip~I~IPT 118 (355)
T cd08197 98 NIAGLLAALL----FRGIRLVHIPT 118 (355)
T ss_pred HHHHHHHHHh----ccCCCEEEecC
Confidence 7765543211 02689999999
No 56
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=93.64 E-value=0.63 Score=47.86 Aligned_cols=89 Identities=13% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe------cCChhHHHHHHHHhhcCC---CceEEEEcCCC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE------TTQQLHAKEIVKVLDLSK---YDGIVCVSGDG 177 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~------T~~~~~a~~l~~~~~~~~---~d~IV~vGGDG 177 (484)
...+|++|+.++..-+ .+.+++...|+.+|+++.++. ........++++.+...+ .|.||++|| |
T Consensus 22 ~~~~~~livtd~~~~~-----~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-G 95 (345)
T cd08195 22 PKGSKILIVTDENVAP-----LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGG-G 95 (345)
T ss_pred cCCCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-h
Confidence 4457899999876543 355789999999988776432 223345556665554434 488999887 7
Q ss_pred hHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 178 tl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++.++.-.+.... ...+|+..||.
T Consensus 96 sv~D~ak~vA~~~----~rgip~i~VPT 119 (345)
T cd08195 96 VVGDLAGFVAATY----MRGIDFIQIPT 119 (345)
T ss_pred HHHhHHHHHHHHH----hcCCCeEEcch
Confidence 7777765543210 02689999996
No 57
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=93.56 E-value=0.65 Score=48.47 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+.-+.+.+.. ..+ ++++..|+.+|+++.++.- .+ .....+.++.+...++|.||.+|| |++.++...
T Consensus 29 ~r~livt~~~~~~~~--~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 29 KKVLLVYGGGSIKKN--GLY-DRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred CEEEEEeCCcHHHhc--CcH-HHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 789999776655432 123 6889999999998766521 11 234445555555568999999998 666665544
Q ss_pred Hhc---CcC---------cccccCCcEEEecC--CCch
Q 011517 186 LLE---RED---------WNDAIKVPLGVVPA--GTGN 209 (484)
Q Consensus 186 L~~---~~~---------~~~~~~~pigiIP~--GSgN 209 (484)
+.. .+. ......+|+-.||. |||-
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTagTGs 142 (382)
T cd08187 105 IAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTLAATGS 142 (382)
T ss_pred HHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCCCchhh
Confidence 321 100 00113589999997 5553
No 58
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=93.54 E-value=0.5 Score=48.65 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=57.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|.+|+..+.+-+ . +.+++...|+.+++.+.++ ..+ ......+.++.+...++|.||.+|| |++.++...+
T Consensus 23 ~~~liv~~~~~~~----~-~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~aK~i 96 (349)
T cd08550 23 SKVAVVGGKTVLK----K-SRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGG-GKTLDTAKAV 96 (349)
T ss_pred CeEEEEEChHHHH----H-HHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHH
Confidence 6788887666543 2 3368999999988755332 222 2334555666655568999999998 7888877776
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+..||.
T Consensus 97 a~~------~~~p~i~VPT 109 (349)
T cd08550 97 ADR------LDKPIVIVPT 109 (349)
T ss_pred HHH------cCCCEEEeCC
Confidence 433 2579999998
No 59
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=93.26 E-value=0.83 Score=47.10 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=59.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|++|+..+..-+ .+.+++...|+..+ ++.++... ......++++.+...+.|.||++|| |++.++.-.+
T Consensus 34 ~~~~livtd~~~~~-----~~~~~l~~~l~~~~-~~~~~~~~~~t~~~v~~~~~~~~~~~~d~IIaiGG-Gsv~D~ak~v 106 (350)
T PRK00843 34 TGRALIVTGPTTKK-----IAGDRVEENLEDAG-DVEVVIVDEATMEEVEKVEEKAKDVNAGFLIGVGG-GKVIDVAKLA 106 (350)
T ss_pred CCeEEEEECCcHHH-----HHHHHHHHHHHhcC-CeeEEeCCCCCHHHHHHHHHHhhccCCCEEEEeCC-chHHHHHHHH
Confidence 36899999887543 34568888898887 66554433 3334556666665557899999998 8888887766
Q ss_pred hcCcCcccccCCcEEEecCCCc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSg 208 (484)
... ..+|+..||.=.+
T Consensus 107 A~~------rgip~I~IPTT~~ 122 (350)
T PRK00843 107 AYR------LGIPFISVPTAAS 122 (350)
T ss_pred HHh------cCCCEEEeCCCcc
Confidence 432 2689999997433
No 60
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=93.25 E-value=1 Score=46.55 Aligned_cols=100 Identities=22% Similarity=0.345 Sum_probs=62.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+.-+.+-+..+ .+ +++...|+.+|+++.++. . .....+.+.++.+...++|.||.+|| |++.++...
T Consensus 26 ~r~lvVt~~~~~~~~g--~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~aK~ 101 (357)
T cd08181 26 KRALIVTGKSSAKKNG--SL-DDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGG-GSPLDAAKA 101 (357)
T ss_pred CEEEEEeCCchHhhcC--cH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 7899998776543221 23 578899999999887652 1 22233556666666678999999998 666666553
Q ss_pred Hh---cCcC--c------ccccCCcEEEecC--CCchhhhh
Q 011517 186 LL---ERED--W------NDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 186 L~---~~~~--~------~~~~~~pigiIP~--GSgN~~A~ 213 (484)
+. ..+. | .....+|+..||. |||--+..
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTtagTGsE~t~ 142 (357)
T cd08181 102 IAVLIKNPDLKVELYFRSKYLKALPVVAIPTTAGTGSEVTQ 142 (357)
T ss_pred HHHHHhCCCcHHHHhcccccCCCCCEEEEeCCCcchhhhCC
Confidence 32 1110 0 0113589999998 66554444
No 61
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=93.20 E-value=1.1 Score=47.46 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=43.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---C-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
+|++|+.-+..-+ ...+ +++...|+.+|+++.++.- + ......+.++.+...+.|.||.+||= ++-++
T Consensus 24 ~~vlivt~~~~~~---~g~~-~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG-SviD~ 95 (414)
T cd08190 24 RRVCLVTDPNLAQ---LPPV-KVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGG-SVIDT 95 (414)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc-cHHHH
Confidence 6888887665322 1123 5888899999998877521 1 22234455555555689999999994 44433
No 62
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=92.77 E-value=1.4 Score=45.90 Aligned_cols=91 Identities=20% Similarity=0.275 Sum_probs=57.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ . ..+ +++...|+.+++++.++. .. ......+.++.+...++|.||.+|| |++.++...
T Consensus 24 ~r~livt~~~~~~--~-g~~-~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVK--L-GLV-DKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGG-GSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhh--c-chH-HHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6899988765542 1 134 589999999999887652 11 2233555666665678999999998 566665443
Q ss_pred H---hcCcC---------cccccCCcEEEecC
Q 011517 186 L---LERED---------WNDAIKVPLGVVPA 205 (484)
Q Consensus 186 L---~~~~~---------~~~~~~~pigiIP~ 205 (484)
+ +..+. ......+|+..||.
T Consensus 99 ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 99 IAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 3 22110 00123589999997
No 63
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=92.77 E-value=1.1 Score=45.95 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=60.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+|++|+..+...+ .+.+++...|+.++ ++.++... ....+.++++.+...+.|.||++|| |++.++.-.+.
T Consensus 26 ~~~liv~d~~~~~-----~~~~~v~~~l~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~d~iIaiGG-Gs~~D~aK~~a 98 (339)
T cd08173 26 GRVLVVTGPTTKS-----IAGKKVEALLEDEG-EVDVVIVEDATYEEVEKVESSARDIGADFVIGVGG-GRVIDVAKVAA 98 (339)
T ss_pred CeEEEEECCchHH-----HHHHHHHHHHHhcC-CeEEEEeCCCCHHHHHHHHHHhhhcCCCEEEEeCC-chHHHHHHHHH
Confidence 6899998776533 24568999999888 66554332 2334556666665568899999997 88888887765
Q ss_pred cCcCcccccCCcEEEecCCCc
Q 011517 188 EREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSg 208 (484)
.. ..+|+..||.=.+
T Consensus 99 ~~------~~~p~i~iPTT~~ 113 (339)
T cd08173 99 YK------LGIPFISVPTAAS 113 (339)
T ss_pred Hh------cCCCEEEecCccc
Confidence 32 2689999997544
No 64
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=92.76 E-value=1.7 Score=45.51 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=62.3
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC----ChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 101 ~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+.+...+ +|++|+..+...+ ...+ +++...|+.+++++.++.-. ......+.++.+...++|.||.+||
T Consensus 16 ~~~~~~g--~~~livt~~~~~~---~~~~-~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGG- 88 (386)
T cd08191 16 RLAARLG--SRALIVTDERMAG---TPVF-AELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGLGG- 88 (386)
T ss_pred HHHHHcC--CeEEEEECcchhh---cchH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-
Confidence 3343444 7899998665443 1233 68999999999988766311 1223344455454568999999998
Q ss_pred ChHHHHHHHH---hcCcC--c-------ccccCCcEEEecC--CCchhhh
Q 011517 177 GILVEVVNGL---LERED--W-------NDAIKVPLGVVPA--GTGNGMI 212 (484)
Q Consensus 177 Gtl~evingL---~~~~~--~-------~~~~~~pigiIP~--GSgN~~A 212 (484)
|++.++...+ +.++. | .....+|+..||. |||--+.
T Consensus 89 GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t 138 (386)
T cd08191 89 GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTTAGTGSEVT 138 (386)
T ss_pred chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCCCcchhhhC
Confidence 6666655443 32211 0 0112579999997 4544333
No 65
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=92.75 E-value=1.3 Score=45.82 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=57.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-c-----CChhHHHHHHHHhhc---CCCceEEEEcCCChH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-T-----TQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T-----~~~~~a~~l~~~~~~---~~~d~IV~vGGDGtl 179 (484)
.+|++|+..+...+ .+.+++...|+.+++++.++. . ..-....++++.+.. .+.|.||++|| |++
T Consensus 31 ~~~~livtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 104 (358)
T PRK00002 31 GKKVAIVTDETVAP-----LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGG-GVI 104 (358)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cHH
Confidence 47899998765532 255789999999998877532 1 123344455544433 34599999987 788
Q ss_pred HHHHHHHhcCcCcccccCCcEEEecC
Q 011517 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 180 ~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
.++...+.... ...+|+..||.
T Consensus 105 ~D~aK~iA~~~----~~gip~i~IPT 126 (358)
T PRK00002 105 GDLAGFAAATY----MRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHh----cCCCCEEEcCc
Confidence 88776654211 12689999997
No 66
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=92.72 E-value=0.81 Score=47.46 Aligned_cols=84 Identities=18% Similarity=0.341 Sum_probs=56.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ec-CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ET-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T-~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+..+..- .. +.+++...|+.+++++.+. .. .......++++.+...+.|.||.+|| |++.++...+
T Consensus 30 ~~~livtd~~~~----~~-~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 103 (366)
T PRK09423 30 KRALVIADEFVL----GI-VGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGG-GKTLDTAKAV 103 (366)
T ss_pred CEEEEEEChhHH----HH-HHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecC-hHHHHHHHHH
Confidence 788888755442 22 4478999999998876322 11 12223445555555567999999999 7777777666
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+..||.
T Consensus 104 A~~------~~~p~i~IPT 116 (366)
T PRK09423 104 ADY------LGVPVVIVPT 116 (366)
T ss_pred HHH------cCCCEEEeCC
Confidence 432 2689999998
No 67
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.64 E-value=1.6 Score=45.43 Aligned_cols=99 Identities=20% Similarity=0.296 Sum_probs=59.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ .-+.+++...|+.+++++.++. . ....+..+.++.+...++|.||.+|| |++-++...
T Consensus 29 ~~~livt~~~~~~----~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GsviD~AK~ 103 (377)
T cd08188 29 KKVLLVSDPGVIK----AGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGG-GSPIDCAKG 103 (377)
T ss_pred CeEEEEeCcchhh----CccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887653211 1134689999999998887652 1 12334555565555568999999998 555555532
Q ss_pred ---HhcCcC--c-------ccccCCcEEEecC--CCchhhhh
Q 011517 186 ---LLERED--W-------NDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 186 ---L~~~~~--~-------~~~~~~pigiIP~--GSgN~~A~ 213 (484)
++..+. | .....+|+..||. |||--+..
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT~gTgSE~t~ 145 (377)
T cd08188 104 IGIVASNGGHILDFEGVDKITRPLPPLICIPTTAGSGADVSQ 145 (377)
T ss_pred HHHHHHCCCCHHHHhCcccccCCCCCEEEECCCCccccccCC
Confidence 222111 0 0112479999998 66543333
No 68
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=92.46 E-value=0.95 Score=46.82 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=58.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--e----cCChhHHHHHHHHhhcCCC----ceEEEEcCCC
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--E----TTQQLHAKEIVKVLDLSKY----DGIVCVSGDG 177 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~----T~~~~~a~~l~~~~~~~~~----d~IV~vGGDG 177 (484)
.++|++||..+..-+ .+.+++...|+.+|+++..+ . ..+-....++++.+...+. |.||++|| |
T Consensus 25 ~~~~~lvVtd~~v~~-----~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG-G 98 (354)
T cd08199 25 GSGRRFVVVDQNVDK-----LYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGG-G 98 (354)
T ss_pred CCCeEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECC-c
Confidence 568899999775432 24468999999999887743 2 2244455566555543344 99998887 7
Q ss_pred hHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 178 ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 178 tl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++.++.-.+.... ...+|+-.||.
T Consensus 99 ~v~D~ak~~A~~~----~rg~p~i~VPT 122 (354)
T cd08199 99 VLTDVAGLAASLY----RRGTPYVRIPT 122 (354)
T ss_pred HHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 7777776664210 01689999997
No 69
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=92.40 E-value=0.89 Score=45.44 Aligned_cols=111 Identities=24% Similarity=0.277 Sum_probs=63.0
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHH--HHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~--l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
++.++.+|..-. +.+. .+.+...+...+.++.+.. +-..+... -..+.+.+.+|.|++.|||||+-.+.+-+..
T Consensus 2 ~~~i~~~~~~~~--~~~~-~~~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~d~ivvlGGDGtlL~~~~~~~~ 77 (281)
T COG0061 2 KVGIVGRPDKPE--ALKI-AKRLYEFLKFKGVTVEVDQ-ELAEELKDFADYVDDDEEKADLIVVLGGDGTLLRAARLLAR 77 (281)
T ss_pred eEEEEecCCcHH--HHHH-HHHHHHHHHhcCceEEEec-hhhhhcccccccccccccCceEEEEeCCcHHHHHHHHHhcc
Confidence 344555554332 3332 2456666666555444321 11111110 1122233679999999999999999998766
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
. .+|+-=|-.|+ =+|-..+ .+.+.+.++..+.+|..+
T Consensus 78 ~-------~~pilgin~G~-lGFLt~~-----~~~~~~~~~~~~~~~~~~ 114 (281)
T COG0061 78 L-------DIPVLGINLGH-LGFLTDF-----EPDELEKALDALLEGEYR 114 (281)
T ss_pred C-------CCCEEEEeCCC-ccccccc-----CHHHHHHHHHHHhcCceE
Confidence 5 46776666662 2333332 134667788888887654
No 70
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=92.26 E-value=1.7 Score=45.36 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHH--HHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV--EVV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~--evi 183 (484)
+|++|+.-+.. +....+ +++...|+++|+++.++.- -......+.++.+...+.|.||.+||=-.+- .++
T Consensus 32 ~~~livt~~~~---~~~g~~-~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~i 107 (383)
T PRK09860 32 TRTLIVTDNML---TKLGMA-GDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGI 107 (383)
T ss_pred CEEEEEcCcch---hhCccH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHH
Confidence 67888765422 112234 5899999999998766532 1234455566555557899999999944433 123
Q ss_pred HHHhcCcC---------cccccCCcEEEecC--CCchhhhh
Q 011517 184 NGLLERED---------WNDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 184 ngL~~~~~---------~~~~~~~pigiIP~--GSgN~~A~ 213 (484)
..++..+. ......+|+..||. |||--+..
T Consensus 108 a~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTTagTGSE~t~ 148 (383)
T PRK09860 108 ALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTR 148 (383)
T ss_pred HHHHHCCCCHHHHhCcCccCCCCCCEEEEeCCCcchhccCc
Confidence 32222210 00113579999997 66654444
No 71
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.23 E-value=1.3 Score=45.54 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=55.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ec-CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ET-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T-~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+.-+.+. . -+.+++...|+.+++++.+. .. .......+.++.+...+.|.||.+|| |++.++...+
T Consensus 23 ~r~livt~~~~~----~-~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GS~iD~aK~i 96 (351)
T cd08170 23 KRALIIADEFVL----D-LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGG-GKTLDTAKAV 96 (351)
T ss_pred CeEEEEECHHHH----H-HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecC-chhhHHHHHH
Confidence 788888743332 2 24468999999999876432 21 12234555666655568999999999 6666666665
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+..||.
T Consensus 97 a~~------~~~P~iaIPT 109 (351)
T cd08170 97 ADY------LGAPVVIVPT 109 (351)
T ss_pred HHH------cCCCEEEeCC
Confidence 432 2589999997
No 72
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.13 E-value=0.87 Score=46.86 Aligned_cols=85 Identities=16% Similarity=0.180 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
+|++|+..+..- . .+.++++..|+..++.+.++. ........++++.+...++|.||.+|| |++.++.-.+..
T Consensus 24 ~~~liv~d~~~~----~-~~~~~l~~~L~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGG-Gs~~D~aK~ia~ 97 (347)
T cd08172 24 KRPLIVTGPRSW----A-AAKPYLPESLAAGEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGG-GKVLDTAKAVAD 97 (347)
T ss_pred CeEEEEECHHHH----H-HHHHHHHHHHhcCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHHH
Confidence 789999987762 2 244688888876666654442 144455666666666678999999998 788887776654
Q ss_pred CcCcccccCCcEEEecCC
Q 011517 189 REDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~G 206 (484)
.. .+|+..||.=
T Consensus 98 ~~------~~p~i~VPTT 109 (347)
T cd08172 98 RL------GVPVITVPTL 109 (347)
T ss_pred Hh------CCCEEEecCc
Confidence 32 5799999973
No 73
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=92.01 E-value=0.99 Score=46.44 Aligned_cols=84 Identities=20% Similarity=0.239 Sum_probs=57.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---C-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-+ . +.+++...|+.+++++.++.- + ......++++.....++|.||.+|| |++.++...
T Consensus 23 ~r~liv~d~~~~~----~-~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGG-Gs~~D~aK~ 96 (345)
T cd08171 23 KKVVVIGGKTALA----A-AKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGG-GKAIDTVKV 96 (345)
T ss_pred CEEEEEeCHHHHH----H-HHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHH
Confidence 7889987665432 2 346899999999987754331 1 2223445555444568999999998 788887766
Q ss_pred HhcCcCcccccCCcEEEecC
Q 011517 186 LLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~ 205 (484)
+... ..+|+..||.
T Consensus 97 ia~~------~~~p~i~VPT 110 (345)
T cd08171 97 LADK------LGKPVFTFPT 110 (345)
T ss_pred HHHH------cCCCEEEecC
Confidence 6443 1579999997
No 74
>PRK10586 putative oxidoreductase; Provisional
Probab=91.76 E-value=2.1 Score=44.34 Aligned_cols=100 Identities=15% Similarity=0.204 Sum_probs=63.6
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 99 l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
|-+.+...+. +|.+|+.-++ +.+...+.+...|+++++.+..+. .....++.++++... .++|.||.+|| |
T Consensus 25 l~~~~~~~g~-~~~lvv~g~~-----~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGG-G 96 (362)
T PRK10586 25 LHDFFTDEQL-SRAVWIYGER-----AIAAAQPYLPPAFELPGAKHILFRGHCSESDVAQLAAASG-DDRQVVIGVGG-G 96 (362)
T ss_pred HHHHHHhcCC-CeEEEEEChH-----HHHHHHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHhc-cCCCEEEEecC-c
Confidence 3344444443 5788886443 222333567888999998775443 223344556655553 47899999997 7
Q ss_pred hHHHHHHHHhcCcCcccccCCcEEEecCCCchhhh
Q 011517 178 ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (484)
Q Consensus 178 tl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A 212 (484)
.+.++...+... ..+|+..||.=.+++-.
T Consensus 97 s~iD~aK~~a~~------~~~p~i~vPT~a~t~s~ 125 (362)
T PRK10586 97 ALLDTAKALARR------LGLPFVAIPTIAATCAA 125 (362)
T ss_pred HHHHHHHHHHhh------cCCCEEEEeCCcccccc
Confidence 777877777654 26899999985555443
No 75
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=91.53 E-value=3.2 Score=43.25 Aligned_cols=102 Identities=25% Similarity=0.288 Sum_probs=64.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----hHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
-+|.+|+.-|.--+ . -+.+++...|+++++++.++.--.+ ....+-++.+...++|.||++|| |+.-++..
T Consensus 29 ~~r~liVTd~~~~~---~-g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGG-GS~~D~AK 103 (377)
T COG1454 29 AKRALIVTDRGLAK---L-GLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGG-GSVIDAAK 103 (377)
T ss_pred CCceEEEECCcccc---c-hhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 37899998776222 1 1447999999999988877532222 23344455566678999999999 55555544
Q ss_pred H---HhcCcC---------cccccCCcEEEecC--CCchhhhhhc
Q 011517 185 G---LLERED---------WNDAIKVPLGVVPA--GTGNGMIKSL 215 (484)
Q Consensus 185 g---L~~~~~---------~~~~~~~pigiIP~--GSgN~~A~sl 215 (484)
+ +...++ .....+.|+-.||. |||--..+.-
T Consensus 104 ~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTaGTGSEvT~~a 148 (377)
T COG1454 104 AIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTAGTGSEVTPFA 148 (377)
T ss_pred HHHHHhhCCchhhhhcccccccCCCCCEEEecCCCcchhhhcCeE
Confidence 4 333321 00122489999997 7777666653
No 76
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=91.35 E-value=2.1 Score=44.60 Aligned_cols=95 Identities=17% Similarity=0.227 Sum_probs=59.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-C--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-Q--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+..+.+. +.+++...|+.+|+++.++... . .....+.++.+...++|.||.+|| |++.++...+
T Consensus 23 ~r~livtd~~~~-------~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~~D~aK~i 94 (374)
T cd08183 23 RRVLLVTGASSL-------RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGG-GSVIDAGKAI 94 (374)
T ss_pred CcEEEEECCchH-------HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecC-chHHHHHHHH
Confidence 789999877653 3357889999999988775321 1 123445555555578999999998 5555554432
Q ss_pred ---hcCcC--c-----------ccccCCcEEEecC--CCchhhh
Q 011517 187 ---LERED--W-----------NDAIKVPLGVVPA--GTGNGMI 212 (484)
Q Consensus 187 ---~~~~~--~-----------~~~~~~pigiIP~--GSgN~~A 212 (484)
+..+. | .....+|+..||. |||--+.
T Consensus 95 a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGSE~t 138 (374)
T cd08183 95 AALLPNPGSVLDYLEGVGRGLPLDGPPLPFIAIPTTAGTGSEVT 138 (374)
T ss_pred HHHHcCCCCHHHHHhccCccccCCCCCCCEEEecCCCchhHHhC
Confidence 22110 0 0113589999997 5554333
No 77
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=91.34 E-value=1.8 Score=44.52 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=55.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE-e-----cCChhHHHHHHHHhhc---CCCceEEEEcCCChH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-E-----TTQQLHAKEIVKVLDL---SKYDGIVCVSGDGIL 179 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~-----T~~~~~a~~l~~~~~~---~~~d~IV~vGGDGtl 179 (484)
.+|++|+.++..-+ .+.+++.+.|+.+|+++.++ . ........++++.+.. ++.|.||++|| |++
T Consensus 20 ~~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv 93 (344)
T TIGR01357 20 PSKLVIITDETVAD-----LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGG-GVV 93 (344)
T ss_pred CCeEEEEECCchHH-----HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-hHH
Confidence 47899998765532 24578999999998876432 2 1123345555555433 34589999987 777
Q ss_pred HHHHHHHhcCcCcccccCCcEEEecC
Q 011517 180 VEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 180 ~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
.++.-.+.... ...+|+..||.
T Consensus 94 ~D~aK~iA~~~----~~~~p~i~VPT 115 (344)
T TIGR01357 94 GDLAGFVAATY----MRGIRFIQVPT 115 (344)
T ss_pred HHHHHHHHHHH----ccCCCEEEecC
Confidence 77765553211 02689999997
No 78
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=91.33 E-value=1.6 Score=45.89 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+.-+..- ..-+.+++...|+.+|+++.++. ........+.++.+...++|.||.+|| |++.++.-
T Consensus 21 ~~k~liVtd~~~~----~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK 95 (398)
T cd08178 21 KKRAFIVTDRFMV----KLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGG-GSPMDAAK 95 (398)
T ss_pred CCeEEEEcChhHH----hCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHH
Confidence 3788888643321 11144689999999999877652 122234556666666678999999999 45444443
Q ss_pred H
Q 011517 185 G 185 (484)
Q Consensus 185 g 185 (484)
.
T Consensus 96 ~ 96 (398)
T cd08178 96 I 96 (398)
T ss_pred H
Confidence 3
No 79
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=91.01 E-value=2.2 Score=44.18 Aligned_cols=93 Identities=20% Similarity=0.344 Sum_probs=58.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-+ . -+.+++...|+..++++.++. + .......++++.+...+.|.||.+|| |++.++...
T Consensus 24 ~~~lvv~~~~~~~---~-~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVK---T-GVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGG-GSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhh---C-ccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6889998776644 1 233688899999888877652 1 23344566776666668999999999 555554433
Q ss_pred H---hcCcC--c-------ccccCCcEEEecCCC
Q 011517 186 L---LERED--W-------NDAIKVPLGVVPAGT 207 (484)
Q Consensus 186 L---~~~~~--~-------~~~~~~pigiIP~GS 207 (484)
+ +..++ | .....+|+..||.=.
T Consensus 99 va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 99 IALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred HHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 3 22110 0 011258999999843
No 80
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=90.96 E-value=2.3 Score=44.36 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ .. +.+++...|+.+++++.++. ... .....+.++.+...++|.||.+|| |.+-++...
T Consensus 30 ~r~lvvt~~~~~~---~g-~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGG-GSviD~aKa 104 (379)
T TIGR02638 30 KKALVVTDKDLIK---FG-VADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGG-GSPIDTAKA 104 (379)
T ss_pred CEEEEEcCcchhh---cc-chHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHH
Confidence 6888888664322 11 34689999999999887762 112 234455555555568999999999 555555433
Q ss_pred ---HhcCcC----c-------ccccCCcEEEecC--CCch
Q 011517 186 ---LLERED----W-------NDAIKVPLGVVPA--GTGN 209 (484)
Q Consensus 186 ---L~~~~~----~-------~~~~~~pigiIP~--GSgN 209 (484)
++..+. | .....+|+..||. |||-
T Consensus 105 ia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTagTGs 144 (379)
T TIGR02638 105 IGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTAGTAA 144 (379)
T ss_pred HHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCCchhh
Confidence 222210 0 0113589999998 4543
No 81
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=90.80 E-value=2.8 Score=43.47 Aligned_cols=71 Identities=20% Similarity=0.304 Sum_probs=46.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ ...+ +++...|+.+|+++.++. . .......+.++.+...+.|.||.+|| |++.++.-.
T Consensus 25 ~~~liv~~~~~~~---~~~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAA---LGLV-ARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGG-GSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhh---CccH-HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 6888887665421 1134 589999999999887652 1 11223455566665578999999998 566665544
No 82
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=90.69 E-value=2.3 Score=43.39 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=55.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC-eEEEEecCChhHHHHHHHHhhcC-CCceEEEEcCCChHHHHHHHHh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~-~~~v~~T~~~~~a~~l~~~~~~~-~~d~IV~vGGDGtl~evingL~ 187 (484)
+|++|+..+.. + +++...|+.+++ .+..+.........++.+.+... +.|.||.+|| |++.++.-.+.
T Consensus 26 ~r~livtd~~~--------~-~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~iIaiGG-Gsv~D~aK~vA 95 (331)
T cd08174 26 GRVAVVSGPGV--------G-EQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIPNVDAVVGIGG-GKVIDVAKYAA 95 (331)
T ss_pred CceEEEECCcH--------H-HHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhccCCCEEEEeCC-cHHHHHHHHHH
Confidence 68999987765 3 467777877776 44444322223334444444332 5899999998 88888887765
Q ss_pred cCcCcccccCCcEEEecCCCch
Q 011517 188 EREDWNDAIKVPLGVVPAGTGN 209 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN 209 (484)
.. ..+|+..||.=.++
T Consensus 96 ~~------~~~p~i~vPTt~~t 111 (331)
T cd08174 96 FL------RGIPLSVPTTNLND 111 (331)
T ss_pred hh------cCCCEEEecCcccc
Confidence 53 26899999985555
No 83
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=90.51 E-value=3 Score=43.41 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=57.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+.-+.-. ....+ +++...|+++++++.++. ........+.++.+...++|.||.+|| |++.++...
T Consensus 27 ~~~livt~~~~~---~~~~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-Gs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGIL---KAGLI-DPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGG-GSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHHHHH
Confidence 678888654321 11234 588999999998876642 123334556666666678999999998 666665544
Q ss_pred H---hcCcC---------cccccCCcEEEecCCCch
Q 011517 186 L---LERED---------WNDAIKVPLGVVPAGTGN 209 (484)
Q Consensus 186 L---~~~~~---------~~~~~~~pigiIP~GSgN 209 (484)
+ +..+. ......+|+..||.=+|+
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTTagt 137 (376)
T cd08193 102 VAVLAGSDQPLADMYGVDLVAGPRLPLILVPTTAGT 137 (376)
T ss_pred HHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCCCcc
Confidence 3 21110 001135899999984433
No 84
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=90.34 E-value=3.2 Score=42.65 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=58.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
+|++|+..+..- . .+.+++...|+.+++++.++.- .......++++.+.. +.|.||.+|| |++-++.
T Consensus 24 ~~~livtd~~~~----~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGG-Gs~~D~a 96 (348)
T cd08175 24 KKALIVADENTY----A-AAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGS-GTINDIT 96 (348)
T ss_pred CcEEEEECCcHH----H-HHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECC-cHHHHHH
Confidence 678888755432 1 2236899999999987765431 223344556655544 8999999999 7778877
Q ss_pred HHHhcCcCcccccCCcEEEecCCCc
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSg 208 (484)
-.+... ..+|+-.||.=+|
T Consensus 97 K~vA~~------~~~p~i~IPTTag 115 (348)
T cd08175 97 KYVSYK------TGIPYISVPTAPS 115 (348)
T ss_pred HHHHHh------cCCCEEEecCccc
Confidence 776533 2689999997433
No 85
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=90.18 E-value=3.4 Score=42.08 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=59.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+..+..-+ .+.+++...|+++ +++.++. . ....+..++++.+...+.|.||.+|| |++.++.-
T Consensus 23 ~~~~liv~~~~~~~-----~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~~D~aK 95 (332)
T cd07766 23 FDRALVVSDEGVVK-----GVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGG-GSTLDTAK 95 (332)
T ss_pred CCeEEEEeCCchhh-----hHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-chHHHHHH
Confidence 36899998765543 2346888899887 7766542 1 23345566666666578999999987 77777765
Q ss_pred HHhcCcCcccccCCcEEEecCCCch
Q 011517 185 GLLEREDWNDAIKVPLGVVPAGTGN 209 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~GSgN 209 (484)
.+..... ..+|+..||.=.+.
T Consensus 96 ~ia~~~~----~~~p~i~iPTt~~t 116 (332)
T cd07766 96 AVAALLN----RGLPIIIVPTTAAT 116 (332)
T ss_pred HHHHHhc----CCCCEEEEeCCCch
Confidence 5433211 26899999984433
No 86
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=90.18 E-value=3.9 Score=42.33 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=54.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+- +.+.+...|+.+++++.++.- .+ .....++++.+...++|.||.+|| |++.++...
T Consensus 24 ~~~livtd~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~~D~aK~ 95 (367)
T cd08182 24 KRVLLVTGPRSA-------IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGG-GSVLDTAKA 95 (367)
T ss_pred CeEEEEeCchHH-------HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCC-cHHHHHHHH
Confidence 678888655442 235678889888887766421 11 233455555555568999999998 666655444
Q ss_pred H---hcCcC-------------cccccCCcEEEecCC
Q 011517 186 L---LERED-------------WNDAIKVPLGVVPAG 206 (484)
Q Consensus 186 L---~~~~~-------------~~~~~~~pigiIP~G 206 (484)
+ +..+. ......+|+..||.=
T Consensus 96 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 132 (367)
T cd08182 96 LAALLGAPREALEDLRIRNKERENRERALPLIAIPTT 132 (367)
T ss_pred HHHHHhCCCcHHHHHHHhccCCCCCCCCCCEEEeCCC
Confidence 3 22110 001235899999984
No 87
>PF10254 Pacs-1: PACS-1 cytosolic sorting protein; InterPro: IPR019381 PACS-1 is a cytosolic sorting protein that directs the localisation of membrane proteins in the trans-Golgi network (TGN)/endosomal system. PACS-1 connects the clathrin adaptor AP-1 to acidic cluster sorting motifs contained in the cytoplasmic domain of cargo proteins such as furin, the cation-independent mannose-6-phosphate receptor and in viral proteins such as human immunodeficiency virus type 1 Nef [].
Probab=89.03 E-value=2.4 Score=44.44 Aligned_cols=108 Identities=18% Similarity=0.204 Sum_probs=70.2
Q ss_pred HHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh----c--------
Q 011517 97 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----L-------- 164 (484)
Q Consensus 97 ~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~----~-------- 164 (484)
+.|...|.+-..-..-.+++|+.--.|+ .+..+|..... -++.|....+.+.+...+. .
T Consensus 3 dQL~~il~sd~~lPe~i~Lvn~sd~qgq-------~l~~~l~~~~~--pvv~t~s~advqa~fs~iv~rIQk~Cn~ns~~ 73 (414)
T PF10254_consen 3 DQLNHILISDDQLPENIILVNTSDWQGQ-------FLSDLLQEHML--PVVCTCSTADVQAAFSAIVSRIQKFCNCNSSP 73 (414)
T ss_pred hhhhhhhccCCCCCceEEEEecCccchh-------HHHHHHhhcCC--CeEecCCHHHHHHHHHHHHHHHHHhccCCCCC
Confidence 4455555443333336677887644433 36667776644 3566777777766544432 1
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcC-----cCcccccCCcEEEecCCCchhhhhhcc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~-----~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
..+--|+++|||--++.|+...++. +||. .-+.+-+||.|+ |.+|+.|+
T Consensus 74 p~~vKV~v~G~~~y~~~VLr~yVE~Ls~K~~dWl--~~~rFlvIPlGs-~~varyLg 127 (414)
T PF10254_consen 74 PPPVKVAVAGGQSYLSAVLRAYVEQLSHKPPDWL--NYLRFLVIPLGS-HPVARYLG 127 (414)
T ss_pred CCceEEEEEccHHHHHHHHHHHHHHhccCCcccc--cceeEEEecCCC-CHHHHHHh
Confidence 1234699999999999988765442 5553 247789999999 99999884
No 88
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.20 E-value=3.4 Score=42.25 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c-C-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T-T-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T-~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+..+...+. . +.+++...|+.+ +++.++. . + ......+.++.+...++|.||.+|| |++.++..
T Consensus 22 ~~~~lvv~~~~~~~~---g-~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 22 NKRVLIVTDPFMVKS---G-MLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred CCeEEEEeCchhhhC---c-cHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECC-chHHHHHH
Confidence 378999987643321 1 335788889877 6665542 1 1 1333445555555568999999999 55555554
Q ss_pred HH---hcCcCcccccCCcEEEecC--CCch
Q 011517 185 GL---LEREDWNDAIKVPLGVVPA--GTGN 209 (484)
Q Consensus 185 gL---~~~~~~~~~~~~pigiIP~--GSgN 209 (484)
.+ ..... ....+|+..||. |||-
T Consensus 96 a~a~~~~~~~--~~~~~p~i~VPTtagtgs 123 (332)
T cd08180 96 AIIYFAKKLG--KKKKPLFIAIPTTSGTGS 123 (332)
T ss_pred HHHHHHhCCC--CCCCCCEEEeCCCCcchH
Confidence 32 22211 123589999997 5553
No 89
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=88.06 E-value=0.78 Score=47.26 Aligned_cols=58 Identities=22% Similarity=0.453 Sum_probs=36.0
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCC-CHHHHHHHHHhCc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPC-KASNAILAVIRGH 236 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~-~~~~A~~~i~~g~ 236 (484)
..+|.||++|||||+--+.. |+++. -+|+--.-.||- +|-. ..+. +..+.+..|+.|+
T Consensus 167 ~~~D~iItLGGDGTvL~aS~-LFq~~------VPPV~sFslGsl-GFLt------pf~f~~f~~~l~~v~~~~ 225 (409)
T KOG2178|consen 167 NRFDLIITLGGDGTVLYASS-LFQRS------VPPVLSFSLGSL-GFLT------PFPFANFQEQLARVLNGR 225 (409)
T ss_pred cceeEEEEecCCccEEEehh-hhcCC------CCCeEEeecCCc-cccc------cccHHHHHHHHHHHhcCc
Confidence 46899999999999866554 44442 467766666632 1111 1111 3456777888877
No 90
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=87.77 E-value=3.7 Score=42.68 Aligned_cols=99 Identities=20% Similarity=0.287 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-+.. ..+ +++...|+.+|+++.++.- .......+.++.+...++|.||.+|| |++-++...
T Consensus 24 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GSviD~AK~ 99 (375)
T cd08179 24 KKAFIVTGGGSMKKF--GFL-DKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGG-GSPIDAAKA 99 (375)
T ss_pred CeEEEEeCchHHHhC--ChH-HHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 688888755433221 123 6899999999998876532 22233555666665568999999999 444444433
Q ss_pred ---HhcCcC--cc----------cccCCcEEEecC--CCchhhh
Q 011517 186 ---LLERED--WN----------DAIKVPLGVVPA--GTGNGMI 212 (484)
Q Consensus 186 ---L~~~~~--~~----------~~~~~pigiIP~--GSgN~~A 212 (484)
++..+. +. ....+|+..||. |||--+.
T Consensus 100 ia~~~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTtagTGSE~t 143 (375)
T cd08179 100 MWIFYEYPELTFEDIVKPFTLPELRNKARFCAIPSTSGTATEVT 143 (375)
T ss_pred HHHHHhCCCcCHHHHhccccccccCCCCCEEEeCCCCchhHhhC
Confidence 222221 00 012479999997 5554333
No 91
>PLN02834 3-dehydroquinate synthase
Probab=87.73 E-value=3.1 Score=44.23 Aligned_cols=85 Identities=18% Similarity=0.231 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE---ec-----CChhHHHHHHHHhhcCC---CceEEEEcCCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ---ET-----TQQLHAKEIVKVLDLSK---YDGIVCVSGDG 177 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~---~T-----~~~~~a~~l~~~~~~~~---~d~IV~vGGDG 177 (484)
.+|++|+.++...+ .|.+++...|+.+|+++.++ .. .......++++.+...+ .|.||++|| |
T Consensus 100 g~rvlIVtD~~v~~-----~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG-G 173 (433)
T PLN02834 100 GKRVLVVTNETVAP-----LYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGG-G 173 (433)
T ss_pred CCEEEEEECccHHH-----HHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECC-h
Confidence 47899999776432 36678999999999876552 11 23344445544444333 458888887 7
Q ss_pred hHHHHHHHH---hcCcCcccccCCcEEEecCC
Q 011517 178 ILVEVVNGL---LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 178 tl~evingL---~~~~~~~~~~~~pigiIP~G 206 (484)
++.++.-.+ +.+ .+|+-.||.-
T Consensus 174 sv~D~ak~~A~~y~r-------giplI~VPTT 198 (433)
T PLN02834 174 VIGDMCGFAAASYQR-------GVNFVQIPTT 198 (433)
T ss_pred HHHHHHHHHHHHhcC-------CCCEEEECCc
Confidence 777776543 333 6899999994
No 92
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=85.44 E-value=14 Score=38.56 Aligned_cols=99 Identities=20% Similarity=0.234 Sum_probs=60.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-+.. ..+ +++...|+.+++++.++. . -......+.++.+...++|.||.+|| |++-++...
T Consensus 26 ~r~livt~~~~~~~~--g~~-~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG-GS~iD~aK~ 101 (380)
T cd08185 26 KKALIVTGNGSSKKT--GYL-DRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG-GSSMDTAKA 101 (380)
T ss_pred CeEEEEeCCCchhhc--cHH-HHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-ccHHHHHHH
Confidence 789999987663222 234 689999999999887652 1 12234455555555568999999998 555555443
Q ss_pred H---hcCcC--------------cccccCCcEEEecC--CCchhhh
Q 011517 186 L---LERED--------------WNDAIKVPLGVVPA--GTGNGMI 212 (484)
Q Consensus 186 L---~~~~~--------------~~~~~~~pigiIP~--GSgN~~A 212 (484)
+ +..+. ......+|+..||. |||--+.
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTtagTGSE~t 147 (380)
T cd08185 102 IAFMAANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTAGTGSEAD 147 (380)
T ss_pred HHHHhhCCCCHHHHhcccccccccCCCCCCCEEEEcCCChhhhccC
Confidence 3 21110 00113589999997 6554433
No 93
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=84.96 E-value=4 Score=42.20 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cC--ChhHHHHHHHHhhcCCCceEEEEcCCChHH--HHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILV--EVVN 184 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~--evin 184 (484)
|++|+.+| +-.... +.+++...|+++++++.++. .. ...++.++++.+...++|.||.+||=-++. .++.
T Consensus 23 r~lvVt~~-~~~~~~---~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va 98 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSG---LVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVA 98 (366)
T ss_dssp EEEEEEEH-HHHHHT---HHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHH
T ss_pred CEEEEECc-hHHhCc---cHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHH
Confidence 89999988 333221 33689999999999986654 22 233455666666667899999999965543 3455
Q ss_pred HHhcCcCcc----------cccCCcEEEecCCCch
Q 011517 185 GLLEREDWN----------DAIKVPLGVVPAGTGN 209 (484)
Q Consensus 185 gL~~~~~~~----------~~~~~pigiIP~GSgN 209 (484)
-++..++.- ....+|+..||.-.|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~gt 133 (366)
T PF00465_consen 99 LLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAGT 133 (366)
T ss_dssp HHHTSSSCGGGGGCECSCCSS--SEEEEEESSSSS
T ss_pred hhccCCCcHHHHHhhccccccCCCcEEEeeCCccc
Confidence 555533110 1123899999985444
No 94
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=84.27 E-value=5.5 Score=40.81 Aligned_cols=84 Identities=20% Similarity=0.311 Sum_probs=52.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeE-EEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQF-TVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~-~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+|++|+..+. -... +.+++...|+..++.+ +-+.... .....++++.+...++|.||.+|| |++.++...+.
T Consensus 24 ~~~livt~~~----~~~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-Gs~iD~aK~ia 97 (337)
T cd08177 24 SRALVLTTPS----LATK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGG-GSTIDLAKAIA 97 (337)
T ss_pred CeEEEEcChH----HHHH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHHHH
Confidence 5788886543 2222 4468888888764322 1111222 223344555554568999999998 88888877664
Q ss_pred cCcCcccccCCcEEEecC
Q 011517 188 EREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~ 205 (484)
.. ..+|+..||.
T Consensus 98 ~~------~~~p~i~IPT 109 (337)
T cd08177 98 LR------TGLPIIAIPT 109 (337)
T ss_pred HH------hcCCEEEEcC
Confidence 43 1589999996
No 95
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=84.06 E-value=16 Score=38.36 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=58.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCCh--hHHHHHHHHhhcCCCceEEEEcCCChHHH--HH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVE--VV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~~~d~IV~vGGDGtl~e--vi 183 (484)
++++|+--+.-- ....+ +++...|+++|+++.++. +..+ ....+.++.+...++|.||.+||=-.+-- ++
T Consensus 50 ~~~lvv~~~~~~---~~g~~-~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKai 125 (395)
T PRK15454 50 KHLFVMADSFLH---QAGMT-AGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAV 125 (395)
T ss_pred CEEEEEcCcchh---hCccH-HHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHH
Confidence 677776543221 12234 579999999999887752 2222 34556666665678999999999554432 22
Q ss_pred HHHhcCcC--cc-------cccCCcEEEecC--CCchhhhh
Q 011517 184 NGLLERED--WN-------DAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 184 ngL~~~~~--~~-------~~~~~pigiIP~--GSgN~~A~ 213 (484)
..++..++ ++ ....+|+..||. |||--+..
T Consensus 126 a~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTtaGTGSE~t~ 166 (395)
T PRK15454 126 ALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGTGSETTN 166 (395)
T ss_pred HHHHhCCCccHHHHhcccccCCCCCEEEECCCCcchhhhCC
Confidence 33332221 10 112479999997 55544433
No 96
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=83.63 E-value=8.1 Score=40.21 Aligned_cols=92 Identities=8% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE----------ecCCh-hHHHHHHHHhh---cCCCceEEEE
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLD---LSKYDGIVCV 173 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~----------~T~~~-~~a~~l~~~~~---~~~~d~IV~v 173 (484)
..+|++|+.++.-.+--. . +.+.+...|+.+|+++.++ .++.. ....++.+.+. .++.|.||++
T Consensus 29 ~~~r~lvVtD~~v~~~~~-~-~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIal 106 (369)
T cd08198 29 ARPKVLVVIDSGVAQANP-Q-LASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAI 106 (369)
T ss_pred CCCeEEEEECcchHHhhh-h-HHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEE
Confidence 347899999987654111 1 2368888898888655432 12231 22334444443 3445699999
Q ss_pred cCCChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 174 SGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 174 GGDGtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
|| |.+.++.-.+.... ...+|+-.||.=
T Consensus 107 GG-G~v~D~ag~vA~~~----~rGip~I~IPTT 134 (369)
T cd08198 107 GG-GAVLDAVGYAAATA----HRGVRLIRIPTT 134 (369)
T ss_pred CC-hHHHHHHHHHHHHh----cCCCCEEEECCC
Confidence 88 88888776554321 126899999964
No 97
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=83.35 E-value=4.9 Score=42.14 Aligned_cols=90 Identities=10% Similarity=0.234 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE----------ecCCh-hHHHHHHHHhh---cCCCceEEEEc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ----------ETTQQ-LHAKEIVKVLD---LSKYDGIVCVS 174 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~----------~T~~~-~~a~~l~~~~~---~~~~d~IV~vG 174 (484)
.+|++|+.++.--+-. .. +.+.+...|+.+++++.++ .++.. ....++.+.+. .++.|.||++|
T Consensus 42 ~~r~liVtD~~v~~~~-~~-l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiG 119 (389)
T PRK06203 42 PKKVLVVIDSGVLRAH-PD-LLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIG 119 (389)
T ss_pred CCeEEEEECchHHHhh-hh-HHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeC
Confidence 5789999877654311 11 2368888999888765431 22332 22444444443 34456999998
Q ss_pred CCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 175 GDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 175 GDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
| |++-++.-.+.... ...+|+-.||.
T Consensus 120 G-Gsv~D~ak~iA~~~----~rgip~I~IPT 145 (389)
T PRK06203 120 G-GAVLDMVGYAAATA----HRGVRLIRIPT 145 (389)
T ss_pred C-cHHHHHHHHHHHHh----cCCCCEEEEcC
Confidence 7 77777765443211 12589999997
No 98
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=83.05 E-value=17 Score=37.41 Aligned_cols=96 Identities=18% Similarity=0.202 Sum_probs=51.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCCh--hHHHHHHHHhhcC---CCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQ--LHAKEIVKVLDLS---KYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~--~~a~~l~~~~~~~---~~d~IV~vGGDGtl~e 181 (484)
.++++|+..|.-- .+.+...|+.+++++.++. +..+ ....+.++.+... ++|.||.+|| |..-+
T Consensus 25 ~~~~lvvtd~~~~--------~~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGG-GS~iD 95 (347)
T cd08184 25 KDPAVFFVDDVFQ--------GKDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGG-GSTLD 95 (347)
T ss_pred CCeEEEEECcchh--------hhHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCC-cHHHH
Confidence 3566666643321 1356667888888877652 1111 2234444444333 7999999998 44444
Q ss_pred HHHH---HhcCcC-------cc--cccCCcEEEecC--CCchhhhh
Q 011517 182 VVNG---LLERED-------WN--DAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 182 ving---L~~~~~-------~~--~~~~~pigiIP~--GSgN~~A~ 213 (484)
+... ++..+. +. ....+|+..||. |||--...
T Consensus 96 ~AKaia~~~~~~~~~~~~~~~~~~~~~~~PlIaVPTTaGTGSE~t~ 141 (347)
T cd08184 96 VAKAVSNMLTNPGSAEDYQGWDLVKNPAVYKIGIPTLSGTGAEASR 141 (347)
T ss_pred HHHHHHHHHhCCCCHHHhcccccccCCCCcEEEEeCCCccccccCC
Confidence 4433 232211 00 112468999996 66654443
No 99
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=82.63 E-value=9.3 Score=39.50 Aligned_cols=99 Identities=16% Similarity=0.209 Sum_probs=68.0
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 101 DFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 101 ~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
+.+..... ++.+|+.-+. ..+++.+++...|...|+.+...... ..++...+++.+...++|.||-+|| |.
T Consensus 23 ~~~~~~~~-~~~lvv~g~~-----~~~~~~~~~~~~l~~~g~~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGG-Gk 95 (360)
T COG0371 23 EVLLKLGL-SRALVVTGEN-----TYAIAGEKVEKSLKDEGLVVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGG-GK 95 (360)
T ss_pred HHHHhccC-CceEEEEChh-----HHHHHHHHHHHHhcccCcceeeeecCccCHHHHHHHHHHhcccCCCEEEEecC-cH
Confidence 33434344 6788887553 44577789999999998754443332 3344556666665467899999998 88
Q ss_pred HHHHHHHHhcCcCcccccCCcEEEecCCCchhhh
Q 011517 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMI 212 (484)
Q Consensus 179 l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A 212 (484)
+.++...+..+ .++|+-.+|.=-.+|=.
T Consensus 96 ~iD~aK~~A~~------~~~pfIsvPT~AS~Da~ 123 (360)
T COG0371 96 TIDTAKAAAYR------LGLPFISVPTIASTDAI 123 (360)
T ss_pred HHHHHHHHHHH------cCCCEEEecCccccccc
Confidence 88888887665 37999999985444433
No 100
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=82.46 E-value=13 Score=38.17 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=57.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHh-cCCeEEEEe----cCChhHHHHHHHHhh---cCCCceEEEEcCCChHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQE----TTQQLHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~-ag~~~~v~~----T~~~~~a~~l~~~~~---~~~~d~IV~vGGDGtl~ 180 (484)
.++++|+..+.--+ .+.+++...|+. .++++.++. ......+.++++.+. ..+.|.||++|| |++.
T Consensus 23 ~~k~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-----LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-----HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 36888888765432 355788889987 677665543 223334455544443 355899999987 7777
Q ss_pred HHHHHHhcCcCcccccCCcEEEecC--CCchh
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPA--GTGNG 210 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~--GSgN~ 210 (484)
++.-.+.... ...+|+-.||. +++++
T Consensus 97 D~ak~vA~~~----~rgip~i~VPTTlla~~d 124 (344)
T cd08169 97 DVAGFVASTL----FRGIAFIRVPTTLLAQSD 124 (344)
T ss_pred HHHHHHHHHh----ccCCcEEEecCCcccccc
Confidence 7665443210 01689999998 55555
No 101
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=82.40 E-value=20 Score=37.24 Aligned_cols=95 Identities=22% Similarity=0.293 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+ ...+ +++...|+.+|+++.++.- .......+.++.+...++|.||.+|| |++-++...
T Consensus 27 ~~~lvvt~~~~~~---~g~~-~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGG-GS~~D~aK~ 101 (374)
T cd08189 27 KKVLIVTDKGLVK---LGLL-DKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGG-GSVIDCAKA 101 (374)
T ss_pred CeEEEEeCcchhh---cccH-HHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-ccHHHHHHH
Confidence 6899887765422 1123 5789999999998776521 12223445555555568999999998 455544433
Q ss_pred ---HhcCcC----------cccccCCcEEEecC--CCch
Q 011517 186 ---LLERED----------WNDAIKVPLGVVPA--GTGN 209 (484)
Q Consensus 186 ---L~~~~~----------~~~~~~~pigiIP~--GSgN 209 (484)
++.++. ......+|+..||. |||-
T Consensus 102 ia~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtagTGs 140 (374)
T cd08189 102 IAARAANPKKSLRKLTGLLKVKKPLPPLFAIPTTAGTGS 140 (374)
T ss_pred HHHHHhCCCCCHHHHhCccccCCCCCCEEEEECCCcccc
Confidence 333221 00112479999997 4543
No 102
>PRK15138 aldehyde reductase; Provisional
Probab=82.34 E-value=12 Score=39.24 Aligned_cols=98 Identities=19% Similarity=0.243 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--c--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--T--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+.-+.+=+. ...+ +++...|+ ++++.++. + .......+.++.+...+.|.||.+|| |.+-++...
T Consensus 30 ~~~livt~~~~~~~--~g~~-~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG-GS~iD~AK~ 103 (387)
T PRK15138 30 ARVLITYGGGSVKK--TGVL-DQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG-GSVLDGTKF 103 (387)
T ss_pred CeEEEECCCchHHh--cCcH-HHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC-hHHHHHHHH
Confidence 68888865443221 2234 56777775 66665542 1 11224455555555568999999999 444433333
Q ss_pred H---hcCcC----c--------ccccCCcEEEecC--CCchhhhh
Q 011517 186 L---LERED----W--------NDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 186 L---~~~~~----~--------~~~~~~pigiIP~--GSgN~~A~ 213 (484)
+ +..+. | .....+|+..||. |||--...
T Consensus 104 ia~~~~~~~~~~~~~~~~~~~~~~~~~~P~iaVPTTaGTGSE~t~ 148 (387)
T PRK15138 104 IAAAANYPENIDPWHILETGGKEIKSAIPMGSVLTLPATGSESNA 148 (387)
T ss_pred HHHHHhCCCCCCHHHHHhccCCCcCCCCCEEEEecCCccccccCC
Confidence 2 21110 0 0112479999997 66654433
No 103
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=81.93 E-value=6.2 Score=37.89 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.2
Q ss_pred HHhhcCCCceEEEEcCCCh
Q 011517 160 KVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGt 178 (484)
.+++.++||+|++-||-|.
T Consensus 79 ~~v~~~dyDalviPGG~g~ 97 (217)
T PRK11780 79 AEADAEDFDALIVPGGFGA 97 (217)
T ss_pred hHCChhhCCEEEECCCCch
Confidence 3445678999999999885
No 104
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=81.81 E-value=11 Score=41.35 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=47.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh------hHHHHHHHHhh---cCCCceEEEEcCCChHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LHAKEIVKVLD---LSKYDGIVCVSGDGILV 180 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~------~~a~~l~~~~~---~~~~d~IV~vGGDGtl~ 180 (484)
.+.++++.+.. .. +.+.+...|+.+|+.+.......+ ..+.++.+.+. ..+.|.||++|| |++.
T Consensus 210 ~k~~iV~d~~v-----~~-~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGG-Gsv~ 282 (542)
T PRK14021 210 VKVALIHTQPV-----QR-HSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGG-GAAT 282 (542)
T ss_pred CeEEEEECccH-----HH-HHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcC-hHHH
Confidence 45666665432 11 446788888888876533322222 22333333332 235788888877 7777
Q ss_pred HHHHHHhcCcCcccccCCcEEEecC
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++.-.+.... ...+|+-.||.
T Consensus 283 D~AKfvA~~y----~rGi~~i~vPT 303 (542)
T PRK14021 283 DLAGFVAATW----MRGIRYVNCPT 303 (542)
T ss_pred HHHHHHHHHH----HcCCCEEEeCC
Confidence 7665554210 01688888887
No 105
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=81.52 E-value=12 Score=33.91 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=44.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHHhcC
Q 011517 129 FLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL~~~ 189 (484)
+.+++...|+..|+.+++.... .+....+++++++..+++ .|.++|+++-|--++.++-..
T Consensus 15 ~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~ 79 (150)
T PF00731_consen 15 IAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTL 79 (150)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCC
Confidence 4468999999999999987765 666778888888755666 466779999999999998753
No 106
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=80.13 E-value=29 Score=30.45 Aligned_cols=76 Identities=18% Similarity=0.078 Sum_probs=48.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC------Chh---HHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQL---HAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~------~~~---~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
....+-++.|.... .. .+.....|+..|+++...... ..- =+.++.+.+...++|.||+++||+=
T Consensus 38 ~~~~~r~y~~~~~~--~~----~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D 111 (149)
T cd06167 38 EIVLARAYGNWTSP--ER----QRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD 111 (149)
T ss_pred eEEEEEEEEecCCc--hh----HHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc
Confidence 34556677776543 11 135566788888876554321 111 1334444444457999999999999
Q ss_pred HHHHHHHHhcC
Q 011517 179 LVEVVNGLLER 189 (484)
Q Consensus 179 l~evingL~~~ 189 (484)
+..+++.|.+.
T Consensus 112 f~~~i~~lr~~ 122 (149)
T cd06167 112 FVPLVERLREL 122 (149)
T ss_pred HHHHHHHHHHc
Confidence 99999999776
No 107
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=79.52 E-value=20 Score=34.55 Aligned_cols=66 Identities=12% Similarity=0.186 Sum_probs=43.1
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.++..+++.|+++.+..+... ....+.+.+...+.|+||+.+.+.. ...++.+... ++|+..+-.
T Consensus 30 ~gi~~~~~~~g~~~~v~~~~~~-~~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~~~ 95 (275)
T cd06295 30 GGIADALAERGYDLLLSFVSSP-DRDWLARYLASGRADGVILIGQHDQ-DPLPERLAET-------GLPFVVWGR 95 (275)
T ss_pred HHHHHHHHHcCCEEEEEeCCch-hHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhC-------CCCEEEECC
Confidence 4578888888998888766554 3344444454468999999987654 2445555433 577776643
No 108
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=77.29 E-value=15 Score=35.78 Aligned_cols=75 Identities=12% Similarity=0.179 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV 171 (484)
...|...+.+.+. +.+|+++| |.++.....+-|.+.....|+..|+++..+.+. . +..+.+ .+.|+|+
T Consensus 17 l~~~~~~~~~~~~---~~~~v~fI--PtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~---d~~~~l--~~ad~I~ 84 (233)
T PRK05282 17 LEHALPLIAELLA---GRRKAVFI--PYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--A---DPVAAI--ENAEAIF 84 (233)
T ss_pred HHHHHHHHHHHHc---CCCeEEEE--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--h---hhHHHH--hcCCEEE
Confidence 3445555555554 34555444 556544333346678899999999987665432 2 223333 4678999
Q ss_pred EEcCCCh
Q 011517 172 CVSGDGI 178 (484)
Q Consensus 172 ~vGGDGt 178 (484)
+-||+=+
T Consensus 85 v~GGnt~ 91 (233)
T PRK05282 85 VGGGNTF 91 (233)
T ss_pred ECCccHH
Confidence 8888754
No 109
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=76.66 E-value=18 Score=34.26 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=46.7
Q ss_pred HHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHH-HHHHHHhcCcCcccccCCcEEEec
Q 011517 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILV-EVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~-evingL~~~~~~~~~~~~pigiIP 204 (484)
.+.++..+++.|+++.+..+.. +....+.++++...++|+||.++.+.... +.+..+... ++|+-.+-
T Consensus 18 ~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~~-------~ip~V~~~ 87 (267)
T cd01536 18 NKGAEAAAKELGVELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANAA-------GIPVVTVD 87 (267)
T ss_pred HHHHHHHHHhcCceEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHHC-------CCcEEEec
Confidence 3577788888899998887763 44556777777666899999988775432 355555443 46665553
No 110
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=76.52 E-value=10 Score=39.09 Aligned_cols=97 Identities=16% Similarity=0.280 Sum_probs=52.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecC--ChhHHHHHHHHhhcCC--CceEEEEcCCChHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETT--QQLHAKEIVKVLDLSK--YDGIVCVSGDGILVEVV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~--~~~~a~~l~~~~~~~~--~d~IV~vGGDGtl~evi 183 (484)
+|++|+..+...+ ...+ +++...|+.. .+.++ ... ......+.++.+...+ +|.||.+|| |++.++.
T Consensus 24 ~r~lvVtd~~~~~---~g~~-~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGG-GSviD~a 96 (355)
T TIGR03405 24 RRVVVVTFPEARA---LGLA-RRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGG-GSVIDTA 96 (355)
T ss_pred CeEEEEECcchhh---cchH-HHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCC-ccHHHHH
Confidence 7899998765322 1223 5788878654 33333 111 1233444444443334 999999998 6666554
Q ss_pred HH---HhcCcCc-------------ccccCCcEEEecC--CCchhhhh
Q 011517 184 NG---LLEREDW-------------NDAIKVPLGVVPA--GTGNGMIK 213 (484)
Q Consensus 184 ng---L~~~~~~-------------~~~~~~pigiIP~--GSgN~~A~ 213 (484)
.. ++..++. .....+|+..||. |||--+..
T Consensus 97 K~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTagTGSE~t~ 144 (355)
T TIGR03405 97 KVLAVGLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAGTGSEVTP 144 (355)
T ss_pred HHHHHHHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCcchhhhcC
Confidence 43 2222210 0113579999997 66554443
No 111
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=75.24 E-value=9.9 Score=38.85 Aligned_cols=53 Identities=25% Similarity=0.337 Sum_probs=40.9
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.+..++++.+...+.|.+|++|||||+.-+ +.|.+. .+++--||.==-||+.-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a-~~L~~~-------gi~vigiPkTIDNDl~g 133 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGTLGIA-RRLADK-------GLPVVGVPKTIDNDLEA 133 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchHHHHH-HHHHhc-------CCCEEeeccccCCCCcC
Confidence 345566777776789999999999999644 455542 58999999988999974
No 112
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=75.18 E-value=11 Score=38.41 Aligned_cols=93 Identities=15% Similarity=0.238 Sum_probs=57.6
Q ss_pred EEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEecC------ChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 111 RLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 111 r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T~------~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
+++-+.|=..|=-+. ..+-.+.+..++..-|. +.-|. ...+-.++++.+...+.|.++++|||||+.-+
T Consensus 32 ~v~G~~~G~~GL~~~~~~~l~~~~v~~~~~~gGt---~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGdgs~~~a 108 (317)
T cd00763 32 EVYGIRDGYAGLIAGDIVPLDRYSVSDIINRGGT---FLGSARFPEFKDEEGQAKAIEQLKKHGIDALVVIGGDGSYMGA 108 (317)
T ss_pred EEEEEecCHHHhcCCCeEeCCHHHhhhHHhCCCe---eeccCCCCccCCHHHHHHHHHHHHHcCCCEEEEECCchHHHHH
Confidence 566666655553221 11111345555444442 22222 23345566777777789999999999998765
Q ss_pred HHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
. .|.+. .+|+--||.==-||+.-+
T Consensus 109 ~-~L~e~-------~i~vigiPkTIDNDi~gt 132 (317)
T cd00763 109 M-RLTEH-------GFPCVGLPGTIDNDIPGT 132 (317)
T ss_pred H-HHHHc-------CCCEEEecccccCCCCCC
Confidence 3 45442 589999999999998853
No 113
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=74.03 E-value=5.2 Score=35.96 Aligned_cols=47 Identities=13% Similarity=0.323 Sum_probs=31.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
|.++....|+..|++++........++ ++.+.+. +.|+|++.|||=.
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~-~~~~~i~--~ad~I~~~GG~~~ 47 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDA-DILEAIR--EADAIFLGGGDTF 47 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHH-HHHHHHH--HSSEEEE--S-HH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChH-HHHHHHH--hCCEEEECCCCHH
Confidence 446788899999999877776665444 5555554 6799999999964
No 114
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=73.74 E-value=12 Score=37.88 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=40.4
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
+-..+++.+...+.|.+|++|||||+.-+. .|.+. ..+|+--||.=--||+.-
T Consensus 79 ~~~~~~~~l~~~~Id~Li~IGGdgs~~~a~-~L~e~------~~i~vigiPkTIDNDl~~ 131 (301)
T TIGR02482 79 GRQKAVENLKKLGIEGLVVIGGDGSYTGAQ-KLYEE------GGIPVIGLPGTIDNDIPG 131 (301)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHh------hCCCEEeecccccCCCcC
Confidence 345567777777899999999999986543 34331 268999999999999985
No 115
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=73.35 E-value=51 Score=30.10 Aligned_cols=103 Identities=17% Similarity=0.276 Sum_probs=60.3
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH---HHHHHHHhhcCCCceEEE
Q 011517 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH---AKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 96 ~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~---a~~l~~~~~~~~~d~IV~ 172 (484)
.+.|.+.+...++...--+..|-.+ . +.+...|...|++.. .+...-+ +.+.++-+-.+++|.+|.
T Consensus 43 ~~~i~~~ls~~G~i~~~R~Y~~a~a-----~----~~l~~~l~~~Gf~pv--~~kG~~Dv~laIDame~~~~~~iD~~vL 111 (160)
T TIGR00288 43 LDEIREILSEYGDIKIGKVLLNQYA-----S----DKLIEAVVNQGFEPI--IVAGDVDVRMAVEAMELIYNPNIDAVAL 111 (160)
T ss_pred HHHHHHHHHhcCCeEEEEEEechhc-----c----HHHHHHHHHCCceEE--EecCcccHHHHHHHHHHhccCCCCEEEE
Confidence 4566666766666543334445332 1 245667888887643 3333222 223333332368999999
Q ss_pred EcCCChHHHHHHHHhcCcCcccccCCcEEE-ecCCCchhhhhhc
Q 011517 173 VSGDGILVEVVNGLLEREDWNDAIKVPLGV-VPAGTGNGMIKSL 215 (484)
Q Consensus 173 vGGDGtl~evingL~~~~~~~~~~~~pigi-IP~GSgN~~A~sl 215 (484)
++|||=+..+++.|-++. .-.+++ .|.+|...|-++.
T Consensus 112 vSgD~DF~~Lv~~lre~G------~~V~v~g~~~~ts~~L~~ac 149 (160)
T TIGR00288 112 VTRDADFLPVINKAKENG------KETIVIGAEPGFSTALQNSA 149 (160)
T ss_pred EeccHhHHHHHHHHHHCC------CEEEEEeCCCCChHHHHHhc
Confidence 999999999999997762 112222 2556666666553
No 116
>PRK03202 6-phosphofructokinase; Provisional
Probab=72.09 E-value=12 Score=38.09 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=58.2
Q ss_pred EEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEE---EecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTV---QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 111 r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v---~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+++-|.|=.-|=-+. ..+-.+.+..+....|..+-- ...+.......+++.+...+.|.+|++|||||+.-+. .
T Consensus 33 ~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~-~ 111 (320)
T PRK03202 33 EVYGIYDGYAGLLEGDIVKLDLKSVSDIINRGGTILGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAK-R 111 (320)
T ss_pred eEEEEecChhhhcCCCEEECCHHHHhhHHhCCCcccccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHH-H
Confidence 566666555443221 111123556655555532111 0111233456677777777899999999999987643 4
Q ss_pred HhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 186 LLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
|.+. .+++--||.==-||+.-
T Consensus 112 L~e~-------~i~vigiPkTIDNDl~g 132 (320)
T PRK03202 112 LTEH-------GIPVIGLPGTIDNDIAG 132 (320)
T ss_pred HHhc-------CCcEEEecccccCCCCC
Confidence 5542 68999999988999885
No 117
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=71.61 E-value=26 Score=33.66 Aligned_cols=66 Identities=11% Similarity=0.135 Sum_probs=44.3
Q ss_pred HhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..++..|+.+.+..+. ......++.+.+...++|+||+++.|-.. .+.+..+... .+|+-.+
T Consensus 19 ~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (273)
T cd06310 19 AGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKDA-------GIPVVLI 88 (273)
T ss_pred HHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEe
Confidence 56777888889888877542 34444556666666789999999877532 4566665443 5676665
No 118
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=71.53 E-value=9.7 Score=40.79 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=67.1
Q ss_pred cEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH---
Q 011517 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV--- 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi--- 183 (484)
.+++-|.|=..|=-.. ..+=.+.+..+...-|- +.-|.+ ..+..++++.+...+.|.++++|||||+.-+.
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GGT---iLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ 196 (459)
T PTZ00286 120 KTIYGAKYGYKGLYKEDWIKLDPKDVKTIHRLGGT---ILGSSRGGFDPKVMVDTLIRHGINILFTLGGDGTHRGALAIY 196 (459)
T ss_pred cEEEEEecCHHHhcCCCeEECCHHHhhhHHhCCCc---eeccCCChhhHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHH
Confidence 4677777765553222 11222355555554442 333333 33566777888878899999999999987543
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHH
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAV 232 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i 232 (484)
..+-++ ..++++--||.==-||+.-. ..+.|....++.++.+|
T Consensus 197 ee~~~~-----g~~I~VIGIPKTIDNDI~~t-d~S~GFdTAv~~~~~aI 239 (459)
T PTZ00286 197 KELRRR-----KLNISVVGIPKTIDNDIPII-DESFGFQTAVEEAQNAI 239 (459)
T ss_pred HHHHHh-----CCCceEEEeccccCCCCCCc-ccCcCchHHHHHHHHHH
Confidence 222222 24689999999999999743 12235443444444444
No 119
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=71.06 E-value=85 Score=29.91 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcC
Q 011517 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLS 165 (484)
Q Consensus 88 ~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~ 165 (484)
..+.+....+.+.+. ...+++.++..+.. .+. ...+.+...++.+|+++.....- ........++++...
T Consensus 118 ~~~~~~~~~~~~~~~----~~~~~i~~v~~~~~-~~~---~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~ 189 (298)
T cd06268 118 DAQQAAALADYLAEK----GKVKKVAIIYDDYA-YGR---GLAAAFREALKKLGGEVVAEETYPPGATDFSPLIAKLKAA 189 (298)
T ss_pred cHHHHHHHHHHHHHh----cCCCEEEEEEcCCc-hhH---HHHHHHHHHHHHcCCEEEEEeccCCCCccHHHHHHHHHhc
Confidence 344444444443322 34678888876544 222 23356777888888766433221 223566667776656
Q ss_pred CCceEEEEcCCChHHHHHHHHhcC
Q 011517 166 KYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+.|.|++++.......++..+...
T Consensus 190 ~~~~vi~~~~~~~~~~~~~~~~~~ 213 (298)
T cd06268 190 GPDAVFLAGYGGDAALFLKQAREA 213 (298)
T ss_pred CCCEEEEccccchHHHHHHHHHHc
Confidence 788888877666777788877654
No 120
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=70.16 E-value=42 Score=28.76 Aligned_cols=79 Identities=22% Similarity=0.299 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (484)
+.|+.+.+.+++.+... ++..++. |.++. ..+...|.+......+..|+.++.+.. ....+..+..+++
T Consensus 7 ~va~~i~~~l~~~i~~l~~~~~~P~Laii~vg~----d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 7 PVAKEIKEELKEEIEKLKEKGITPKLAIILVGD----DPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT---EEEEEEES------HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEecCC----ChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 35566666666655433 4444454 55544 456678999999999999999877654 4555566666776
Q ss_pred hc-CCCceEEE
Q 011517 163 DL-SKYDGIVC 172 (484)
Q Consensus 163 ~~-~~~d~IV~ 172 (484)
+. ...++|++
T Consensus 83 N~D~~V~GIlv 93 (117)
T PF00763_consen 83 NEDPSVHGILV 93 (117)
T ss_dssp HH-TT-SEEEE
T ss_pred hCCCCCCEEEE
Confidence 53 35678775
No 121
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=70.09 E-value=15 Score=41.87 Aligned_cols=61 Identities=18% Similarity=0.266 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.+...+++.+...+.|+++++|||||+.-+. .|.+..+.-....+|+-.||.==-||+.-+
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~-~L~~~~~~y~~~~i~vVgIPkTIDNDv~gT 525 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEAYKGLL-QLREAREQYEEFCIPMVLIPATVSNNVPGT 525 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHhhCCCCCccEEEecccccCCCCCC
Confidence 4556677777778899999999999987554 343211100124699999999999998743
No 122
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=70.07 E-value=30 Score=32.14 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=41.2
Q ss_pred hHHhHHHHHHh--cCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 129 FLDDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 129 ~~~~v~p~l~~--ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+.+.++..+++ .++++.++.+.... ...+.++++...++|+|+..+.+.+...++.-+.
T Consensus 18 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~ 79 (269)
T cd01391 18 LLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAA 79 (269)
T ss_pred HHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 33566777777 77777777665543 5666777776678999999998877665555443
No 123
>PRK14071 6-phosphofructokinase; Provisional
Probab=68.73 E-value=15 Score=38.16 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=40.7
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
...++++.+...+.|.++++|||||+. .++.|.+. ..+++--||.==-||+..+
T Consensus 95 ~~~~~~~~l~~~~Id~Li~IGGdgS~~-~a~~L~~~------~~i~vIgiPkTIDNDl~~t 148 (360)
T PRK14071 95 RSQEIIDGYHSLGLDALIGIGGDGSLA-ILRRLAQQ------GGINLVGIPKTIDNDVGAT 148 (360)
T ss_pred HHHHHHHHHHHcCCCEEEEECChhHHH-HHHHHHHh------cCCcEEEecccccCCCcCc
Confidence 335566677767899999999999986 44555442 2689999999889998754
No 124
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=68.68 E-value=98 Score=34.29 Aligned_cols=120 Identities=13% Similarity=0.077 Sum_probs=77.5
Q ss_pred CceEEeeEEeCCCCHHHHHHHHHHHHHhhhhc----CC-CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec
Q 011517 75 GSVVRKDFVFEPLSEDSKRLWCEKLRDFIDSF----GR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET 149 (484)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~----~~-~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T 149 (484)
..|+-.-+++.-.+.+++....+.+.+.+... +. ..++.||. |...-.. ..+++...|+..|++|++...
T Consensus 371 ~~rkmGhV~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~----gs~sd~~-~~~~~~~~l~~~g~~~~~~v~ 445 (577)
T PLN02948 371 KQRKMGHITVVGPSAAEVEARLDQLLAEESADPDALPKGTPLVGIIM----GSDSDLP-TMKDAAEILDSFGVPYEVTIV 445 (577)
T ss_pred CCCeeEEEEEecCCHHHHHHHHHHHHhhhccCCCCCCCCCCeEEEEE----CchhhHH-HHHHHHHHHHHcCCCeEEEEE
Confidence 34566778888777666655555544443321 22 23466665 3222233 346889999999999987654
Q ss_pred ---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 150 ---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 150 ---~~~~~a~~l~~~~~~~~~d~-IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
+.+.+..++++++...+.+. |.++|+.+-|--|+.++-. .|+-=+|..++
T Consensus 446 sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~---------~pvi~vp~~~~ 499 (577)
T PLN02948 446 SAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTP---------LPVIGVPVKTS 499 (577)
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccC---------CCEEEcCCCCC
Confidence 45666778888887666664 5567899999999888754 46555677544
No 125
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=68.30 E-value=21 Score=34.60 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=25.0
Q ss_pred HhhcCCCceEEEEcCCChH---------HHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 161 VLDLSKYDGIVCVSGDGIL---------VEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDGtl---------~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
+++.++||+|++.||=|.. .+++...++. .-+|+.|=.|.
T Consensus 89 dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~-------gK~iaAIChgp 137 (231)
T cd03147 89 EVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYAN-------GGVVAAVCHGP 137 (231)
T ss_pred HCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHc-------CCEEEEEChHH
Confidence 3345689999999997753 3444444433 45777665444
No 126
>PRK06756 flavodoxin; Provisional
Probab=68.03 E-value=25 Score=31.12 Aligned_cols=68 Identities=19% Similarity=0.300 Sum_probs=42.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
++++||+ .|..|...++ .+.+...|+..|++++++........ .++.++|.|++.. |+|.+...+..+
T Consensus 2 mkv~IiY--~S~tGnTe~v-A~~ia~~l~~~g~~v~~~~~~~~~~~------~~~~~~d~vi~gspt~~~g~~p~~~~~f 72 (148)
T PRK06756 2 SKLVMIF--ASMSGNTEEM-ADHIAGVIRETENEIEVIDIMDSPEA------SILEQYDGIILGAYTWGDGDLPDDFLDF 72 (148)
T ss_pred ceEEEEE--ECCCchHHHH-HHHHHHHHhhcCCeEEEeehhccCCH------HHHhcCCeEEEEeCCCCCCCCcHHHHHH
Confidence 4678888 4555666654 46788888888988877654332111 2235788887764 677766544444
No 127
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=67.76 E-value=31 Score=34.35 Aligned_cols=91 Identities=11% Similarity=0.194 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCce
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~ 169 (484)
.....+.+.+++.+ +.-+++.|++||..-.. . ...+.++...+..|+++..+......+..+..+.+. ++.|.
T Consensus 115 ~~~~~~l~l~~~l~---P~~k~igvl~~~~~~~~--~-~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~-~~~da 187 (294)
T PF04392_consen 115 PPIEKQLELIKKLF---PDAKRIGVLYDPSEPNS--V-AQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALA-EKVDA 187 (294)
T ss_dssp --HHHHHHHHHHHS---TT--EEEEEEETT-HHH--H-HHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHC-TT-SE
T ss_pred cCHHHHHHHHHHhC---CCCCEEEEEecCCCccH--H-HHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhh-ccCCE
Confidence 34456666665654 45689999999985432 2 233577888888899988777788888888887775 56786
Q ss_pred EEEEcCCChHHHHHHHHhc
Q 011517 170 IVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 170 IV~vGGDGtl~evingL~~ 188 (484)
++ +..|+++..-...+..
T Consensus 188 ~~-~~~~~~~~~~~~~i~~ 205 (294)
T PF04392_consen 188 LY-LLPDNLVDSNFEAILQ 205 (294)
T ss_dssp EE-E-S-HHHHHTHHHHHH
T ss_pred EE-EECCcchHhHHHHHHH
Confidence 55 4678888765555543
No 128
>PLN02564 6-phosphofructokinase
Probab=67.11 E-value=15 Score=39.59 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=58.7
Q ss_pred cEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++-|.|=..|=-.. ..+=.+.+..+...-| ++.-|.+. .+..++++.+...+.|.++++|||||+.-+.. |
T Consensus 120 ~~V~Gi~~Gy~GL~~~~~i~Lt~~~V~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~Id~LivIGGDGS~~gA~~-L 195 (484)
T PLN02564 120 TRILGIDGGYRGFYSRNTIPLTPKVVNDIHKRGG---TILGTSRGGHDTSKIVDSIQDRGINQVYIIGGDGTQKGASV-I 195 (484)
T ss_pred eEEEEEccChHHhCCCCeEeCCHHHhhcHhhCCC---ceeccCCCcchHHHHHHHHHHhCCCEEEEECCchHHHHHHH-H
Confidence 4677776655553221 1111234555555544 23444332 34567777887778999999999999875432 2
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhh
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.+.- .+...++++--||.==-||+..
T Consensus 196 ~e~~-~~~g~~i~VIGIPKTIDNDI~~ 221 (484)
T PLN02564 196 YEEI-RRRGLKVAVAGIPKTIDNDIPV 221 (484)
T ss_pred HHHH-HHcCCCceEEEecccccCCCcC
Confidence 2200 0012356688889988899875
No 129
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=67.04 E-value=38 Score=39.41 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHH--hcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLE--DANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~--~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
.+|++|+..+..-+ .. +.+++...|+ .+++++.++. ........++++.+...+.|.||.+|| |++.++
T Consensus 480 ~~~~lvVtd~~~~~---~g-~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGG-GSviD~ 554 (862)
T PRK13805 480 KKRAFIVTDRFMVE---LG-YVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGG-GSPMDA 554 (862)
T ss_pred CCEEEEEECcchhh---cc-hHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC-chHHHH
Confidence 47899988654322 11 3368899998 7788776653 122344566666666678999999998 555555
Q ss_pred HHH
Q 011517 183 VNG 185 (484)
Q Consensus 183 ing 185 (484)
...
T Consensus 555 AK~ 557 (862)
T PRK13805 555 AKI 557 (862)
T ss_pred HHH
Confidence 443
No 130
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=67.03 E-value=17 Score=36.33 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=40.9
Q ss_pred EEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHHhhcCCCceEEE-EcCCChH
Q 011517 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGDGIL 179 (484)
Q Consensus 115 iiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~IV~-vGGDGtl 179 (484)
|+.|.|+-... +.+ ++....|+..|+++.+-.+-. +..|.++.+.+.....|+|++ .||+|+.
T Consensus 3 iiapSs~~~~~-~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga~ 76 (282)
T cd07025 3 IVAPSSPIDEE-ERL-ERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGAN 76 (282)
T ss_pred EEeCCCCCCcH-HHH-HHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCHH
Confidence 78898887554 445 588889999998776643322 223445555555556787766 4888863
No 131
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=66.85 E-value=19 Score=38.35 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=60.8
Q ss_pred cEEEEEEcCCCCCc-----chhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 110 KRLYIFVNPFGGKK-----IASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~-----~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
.+++-|.|=.-|=- +-..+=.+.+..+...-| ++.-|.+ ..+..++++.+...+.|.++++|||||+.-+.
T Consensus 113 ~~V~Gi~~Gy~GL~~~~~~~~~~Lt~~~v~~i~~~GG---TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGGdgT~~gA~ 189 (443)
T PRK06830 113 RRILGIRYGYQGLIPRYGHDPVELTPEVVADIHEFGG---TILGSSRGPQDPEEIVDTLERMNINILFVIGGDGTLRGAS 189 (443)
T ss_pred eEEEEEccCHHHHhhccCCCEEECCHHHHhhHHhCCC---ccccCCCCchhHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 46777777655521 222222245666655544 2333433 33466777888778899999999999987543
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
. |.+.- .+...++++--||.==-||+..
T Consensus 190 ~-l~ee~-~~~g~~I~VIGIPKTIDNDi~~ 217 (443)
T PRK06830 190 A-IAEEI-ERRGLKISVIGIPKTIDNDINF 217 (443)
T ss_pred H-HHHHH-HHhCCCceEEEeccccCCCCcC
Confidence 2 22200 0012368899999988999975
No 132
>PRK06703 flavodoxin; Provisional
Probab=66.54 E-value=26 Score=31.13 Aligned_cols=86 Identities=24% Similarity=0.233 Sum_probs=48.6
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHHh
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLL 187 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL~ 187 (484)
+++|++ .|..|.+.++ .+.++..|...|++++++....... . ++.++|.|+++. |+|-+..-+..++
T Consensus 3 kv~IiY--~S~tGnT~~i-A~~ia~~l~~~g~~v~~~~~~~~~~-----~--~l~~~d~viigspt~~~g~~p~~~~~f~ 72 (151)
T PRK06703 3 KILIAY--ASMSGNTEDI-ADLIKVSLDAFDHEVVLQEMDGMDA-----E--ELLAYDGIILGSYTWGDGDLPYEAEDFH 72 (151)
T ss_pred eEEEEE--ECCCchHHHH-HHHHHHHHHhcCCceEEEehhhCCH-----H--HHhcCCcEEEEECCCCCCcCcHHHHHHH
Confidence 577777 4555666654 4688888999998888765433211 1 235788888866 6775554333332
Q ss_pred cCcCcccccCCcEEEecCC
Q 011517 188 EREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~G 206 (484)
..-........+++++=.|
T Consensus 73 ~~l~~~~l~~k~~~vfg~g 91 (151)
T PRK06703 73 EDLENIDLSGKKVAVFGSG 91 (151)
T ss_pred HHHhcCCCCCCEEEEEccC
Confidence 2110001123567776433
No 133
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=64.47 E-value=22 Score=36.57 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=39.9
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
+-..+++.+...+.|.+|++|||||+.-+. .|.+.- .++...+++--||.=--||+.-
T Consensus 80 ~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~-~L~e~~-~~~~~~i~vigiPkTIDNDl~~ 137 (338)
T cd00363 80 GRAKAAENLKKHGIDALVVIGGDGSYTGAD-LLTEEW-PSKYQGFNVIGLPGTIDNDIKG 137 (338)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCHHHHHHHH-HHHHHH-HhcCCCccEEEeeecccCCCcC
Confidence 345677777777899999999999987542 222210 0112368999999877898873
No 134
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=64.18 E-value=73 Score=31.87 Aligned_cols=77 Identities=14% Similarity=0.086 Sum_probs=48.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNG 185 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDG-tl~eving 185 (484)
.+|+.+++++.+.-++. ..+.++..+++.|+++.... .....+....++++...++|+|++. +|+ ....++..
T Consensus 132 ~~~~~~i~~~~~~~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i~~~~pdaV~~~-~~~~~a~~~~~~ 207 (341)
T cd06341 132 GTRAVALVTALSAAVSA---AAALLARSLAAAGVSVAGIVVITATAPDPTPQAQQAAAAGADAIITV-LDAAVCASVLKA 207 (341)
T ss_pred CcEEEEEEeCCcHHHHH---HHHHHHHHHHHcCCccccccccCCCCCCHHHHHHHHHhcCCCEEEEe-cChHHHHHHHHH
Confidence 46788777665422221 23567788888988754322 2223455566677666689988765 566 77788888
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 208 ~~~~ 211 (341)
T cd06341 208 VRAA 211 (341)
T ss_pred HHHc
Confidence 8765
No 135
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=64.13 E-value=60 Score=30.78 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=43.6
Q ss_pred HhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..++..|+.+.+..+.+. ....+..+++...++|+||+..++....+.++-+... ++|+-++
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvV~~ 85 (266)
T cd06282 19 QGIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADAATSPALDLLDAE-------RVPYVLA 85 (266)
T ss_pred HHHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhC-------CCCEEEE
Confidence 5777788888988888776542 2233556666557899999988876434556555443 5665444
No 136
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=63.78 E-value=50 Score=31.57 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=43.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDG-tl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..+.+..+ ..+..+.+...++|+||+..+|. +..++++.+.+. ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~-------~ipvV~~ 86 (273)
T cd06305 19 AGTKAEAEALGGDLRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDA-------GIPVVAF 86 (273)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHc-------CCCEEEe
Confidence 577788888999888876654222 23455555556899999998875 356777766543 5665444
No 137
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=63.71 E-value=1.1e+02 Score=28.90 Aligned_cols=67 Identities=15% Similarity=0.194 Sum_probs=45.7
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.+...+++.|+.+.++.+.......+..+++...+.|+||+.+.|-+- +.+.-+... .+|+-.+-.
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~~~ 85 (266)
T cd06278 19 EALSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSGTLSS-ELAEECRRN-------GIPVVLINR 85 (266)
T ss_pred HHHHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhc-------CCCEEEECC
Confidence 4677888888998887776654445556666666789999999887553 345544443 567766633
No 138
>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function. However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.
Probab=63.66 E-value=27 Score=30.33 Aligned_cols=59 Identities=27% Similarity=0.265 Sum_probs=31.8
Q ss_pred HhHHHHHHhcCCeEEEEecC-----ChhH-----HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTVQETT-----QQLH-----AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~-----~~~~-----a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+.....|+..|+++...... ..+. +.++.+.+....+|.+|+++||+=+-.+++.|-.+
T Consensus 50 ~~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~ 118 (146)
T PF01936_consen 50 KSFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRER 118 (146)
T ss_dssp HHHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH
T ss_pred hhHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHc
Confidence 35557788899866554331 1111 12333343334579999999999999999999765
No 139
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=62.35 E-value=43 Score=35.32 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHHHHhhhh------c-CC----CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH
Q 011517 87 LSEDSKRLWCEKLRDFIDS------F-GR----PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA 155 (484)
Q Consensus 87 ~~~~~~~~w~~~l~~~~~~------~-~~----~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a 155 (484)
.+.++...|.+.+.+.... . .| +.++..|.|.++|-||.--. -.+.-.|...|..+-++-...++.+
T Consensus 87 yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta--~nLA~~LA~~G~rVLlIDlDpQ~~l 164 (405)
T PRK13869 87 YTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTS--AHLAQYLALQGYRVLAVDLDPQASL 164 (405)
T ss_pred ecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHH--HHHHHHHHhcCCceEEEcCCCCCCH
Confidence 3557788898888762211 1 12 33899999999999997643 3688889999999999988888876
Q ss_pred HHHH
Q 011517 156 KEIV 159 (484)
Q Consensus 156 ~~l~ 159 (484)
..+.
T Consensus 165 t~~~ 168 (405)
T PRK13869 165 SALL 168 (405)
T ss_pred HHHc
Confidence 6543
No 140
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=62.33 E-value=9.2 Score=38.24 Aligned_cols=52 Identities=25% Similarity=0.411 Sum_probs=39.8
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.++++.+...+.|.+|++|||||+..+ +.|.+. ..+++-.||.=--||+...
T Consensus 82 ~~~~~~l~~~~Id~Li~IGG~gs~~~a-~~L~~~------~~i~vigiPkTIDNDi~gt 133 (282)
T PF00365_consen 82 KKIVENLKKLGIDALIVIGGDGSMKGA-HKLSEE------FGIPVIGIPKTIDNDIPGT 133 (282)
T ss_dssp HHHHHHHHHTTESEEEEEESHHHHHHH-HHHHHH------HHSEEEEEEEETTSSCTTS
T ss_pred hhHHHHHHHhCCCEEEEecCCCHHHHH-HHHHhc------CceEEEEEeccccCCcCCC
Confidence 456677776788999999999998765 445432 2489999999888988863
No 141
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=62.18 E-value=48 Score=27.90 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=46.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~ 188 (484)
++++++. |.|-+..+..++++..+++.|+++++..+.-. ++.......++|.|++ |-+=- ..+=+..+..
T Consensus 2 kkILlvC----g~G~STSlla~k~k~~~~e~gi~~~i~a~~~~----e~~~~~~~~~~DvIll-~PQi~~~~~~i~~~~~ 72 (104)
T PRK09590 2 KKALIIC----AAGMSSSMMAKKTTEYLKEQGKDIEVDAITAT----EGEKAIAAAEYDLYLV-SPQTKMYFKQFEEAGA 72 (104)
T ss_pred cEEEEEC----CCchHHHHHHHHHHHHHHHCCCceEEEEecHH----HHHHhhccCCCCEEEE-ChHHHHHHHHHHHHhh
Confidence 4566665 44445557888999999999999887554332 2333333346886654 32211 1112222222
Q ss_pred CcCcccccCCcEEEecC
Q 011517 189 REDWNDAIKVPLGVVPA 205 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~ 205 (484)
. .++|+.+||.
T Consensus 73 ~------~~ipv~~I~~ 83 (104)
T PRK09590 73 K------VGKPVVQIPP 83 (104)
T ss_pred h------cCCCEEEeCH
Confidence 2 3689998874
No 142
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=61.32 E-value=61 Score=31.78 Aligned_cols=87 Identities=9% Similarity=0.070 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL 186 (484)
.+.+.+++ |.....--.++. ..++..+++.|+++.+..+. .+....+..+.+...++|+|++.+.| ..+++.+..+
T Consensus 26 ~~~I~vi~-~~~~~~f~~~~~-~~i~~~~~~~G~~~~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~ 103 (295)
T PRK10653 26 KDTIALVV-STLNNPFFVSLK-DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 103 (295)
T ss_pred CCeEEEEe-cCCCChHHHHHH-HHHHHHHHHcCCeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHH
Confidence 34455554 654433233333 46788888999988776554 23334455666655689999887765 3334555554
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
... ++|+-.+-
T Consensus 104 ~~~-------~ipvV~~~ 114 (295)
T PRK10653 104 NQA-------NIPVITLD 114 (295)
T ss_pred HHC-------CCCEEEEc
Confidence 432 56776663
No 143
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=61.08 E-value=23 Score=35.78 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEcCCCCCcch-hhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHHhhcCCCceEEEE-cCCChH
Q 011517 113 YIFVNPFGGKKIA-SKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (484)
Q Consensus 113 lviiNP~sG~~~a-~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~IV~v-GGDGtl 179 (484)
.-|+.|.|+-... ...+ +.....|+..|+++.+-.+-+. ..|.++.+.+.....|+|+|+ ||+|+.
T Consensus 3 I~ivAPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 80 (308)
T cd07062 3 IAVVSPSSGIPGELPHRL-ERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDSN 80 (308)
T ss_pred EEEEeCCCCCcccCHHHH-HHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCHh
Confidence 3578899885421 3345 4677789999988776544322 234556555555667877765 888863
No 144
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=60.60 E-value=53 Score=29.84 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=51.1
Q ss_pred hHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 129 FLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~-IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
..+++...|+..|++|++... +.+.+..++++++...+.+. |.++|+.+-|--++.++-. .|+--+|
T Consensus 13 ~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~---------~PVIgvP 83 (156)
T TIGR01162 13 TMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTP---------LPVIGVP 83 (156)
T ss_pred HHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccC---------CCEEEec
Confidence 446888999999999988654 44567778888876656665 4556788888888887754 4666667
Q ss_pred CCCc
Q 011517 205 AGTG 208 (484)
Q Consensus 205 ~GSg 208 (484)
.-++
T Consensus 84 ~~~~ 87 (156)
T TIGR01162 84 VPSK 87 (156)
T ss_pred CCcc
Confidence 6543
No 145
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=60.57 E-value=28 Score=36.68 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=40.7
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.....+++.+...+.|.++++|||||+.-+. .|.+.-+ +....+++--||.==-||+.-
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS~~~a~-~L~~~~~-~~g~~i~vvgIPkTIDNDl~~ 157 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDTNTTAA-DLAAYLA-ENGYDLTVVGLPKTIDNDVVP 157 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhHHHHHH-HHHHHHH-HhCCCceEEEeeeeeeCCCCC
Confidence 3445666777777899999999999987553 3322100 011368999999999999964
No 146
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.39 E-value=63 Score=31.08 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=43.1
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDG-tl~evingL~~~~~~~~~~~~pigiI 203 (484)
..++..+++.|+++.+..+.. .....+..+.+...+.|+||+.+.|- .+.+.+..+... .+|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAA-------GVPVVVV 86 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHC-------CCCEEEe
Confidence 577788888898877765542 22233456666667899999988763 234566665543 5677665
No 147
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.51 E-value=70 Score=30.70 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=45.8
Q ss_pred HhHHHHHHhcCCeEEEEecCC--hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+..+.+ .....+..+++...+.|+||+++.+.. +.+.+..+.+. ++|+-.+
T Consensus 20 ~g~~~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 88 (271)
T cd06312 20 NGAEDAAKDLGVDVEYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAA-------GIPVISF 88 (271)
T ss_pred HHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHC-------CCeEEEe
Confidence 567778888899988887764 344455666666678999999998764 45566655443 4666555
No 148
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=59.48 E-value=59 Score=31.15 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=41.5
Q ss_pred HhHHHHHHhc---CCeE--EEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDA---NIQF--TVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~a---g~~~--~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++. |.++ .+..+.+ .....+..+++...++|+||+.+.|-. +.++++.+.+. ++|+-.+
T Consensus 19 ~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~-------~iPvv~~ 91 (272)
T cd06300 19 DEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEA-------GIPVVSF 91 (272)
T ss_pred HHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHC-------CCeEEEE
Confidence 4566677777 8744 4444442 233445666666679999999998853 45566665543 5676665
Q ss_pred c
Q 011517 204 P 204 (484)
Q Consensus 204 P 204 (484)
-
T Consensus 92 ~ 92 (272)
T cd06300 92 D 92 (272)
T ss_pred e
Confidence 3
No 149
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=58.93 E-value=20 Score=40.81 Aligned_cols=101 Identities=10% Similarity=0.149 Sum_probs=57.9
Q ss_pred EEEEEEcCCCCCcch----hhchHHhHHHHHHhcCCeEEEEecCC------hhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 111 RLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 111 r~lviiNP~sG~~~a----~~~~~~~v~p~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+++.|.|=..|=-+. .+.-.+.|..++..-|- ++-|.+ ...-...++.+...+.|.+|++|||||+.
T Consensus 35 ~V~gi~~Gy~GL~~g~~~i~~l~~~~V~~i~~~GGT---~LGTsR~~~f~~~e~~~~a~~~L~~~~Id~LvvIGGdgSl~ 111 (762)
T cd00764 35 KVFFVYEGYEGLVKGGDYIKQAEWESVSNWLQEGGT---IIGSARCKEFREREGRLQAAYNLIQRGITNLCVIGGDGSLT 111 (762)
T ss_pred EEEEEecCHHHHhCCCCCceeCCHHHHHHHHhCCCC---cccCCCCCcccCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 566666655443222 11212466666666552 122211 12334556667667899999999999986
Q ss_pred HHH----------HHHhcCc-----CcccccCCcEEEecCCCchhhhhh
Q 011517 181 EVV----------NGLLERE-----DWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 181 evi----------ngL~~~~-----~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
-+- ..|.+.. ..+....+++--||.==-||++-+
T Consensus 112 gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gT 160 (762)
T cd00764 112 GADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGT 160 (762)
T ss_pred HHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCC
Confidence 543 2222211 111223678888998889999843
No 150
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=58.92 E-value=88 Score=31.04 Aligned_cols=87 Identities=8% Similarity=0.083 Sum_probs=51.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+.+.+.|++.-.+..- -.+++ +.++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+-.-.+.+..+
T Consensus 60 ~~~~Igvv~~~~~~~~-~~~l~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l 137 (328)
T PRK11303 60 RTRSIGLIIPDLENTS-YARIA-KYLERQARQRGYQLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRL 137 (328)
T ss_pred CCceEEEEeCCCCCch-HHHHH-HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHH
Confidence 3456666663222211 12222 467777888898888776643 33334556666567899999988754334555555
Q ss_pred hcCcCcccccCCcEEEe
Q 011517 187 LEREDWNDAIKVPLGVV 203 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiI 203 (484)
.+. ++|+-.+
T Consensus 138 ~~~-------~iPvV~v 147 (328)
T PRK11303 138 QND-------GLPIIAL 147 (328)
T ss_pred Hhc-------CCCEEEE
Confidence 432 5677665
No 151
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=58.91 E-value=36 Score=32.59 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=39.5
Q ss_pred cCCCCCcchhhchHHhHHHHHHhcCCeEEEE-ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 117 NPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 117 NP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
=|.++.-.+.+.|.++.+..|+..|+.+.-. ..+. +..++...+. +-|.|+| ||=-|++-
T Consensus 38 IPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~--~~~~Ie~~l~--~~d~IyV-gGGNTF~L 98 (224)
T COG3340 38 IPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKP--PLAAIENKLM--KADIIYV-GGGNTFNL 98 (224)
T ss_pred EecCccccchHHHHHHHHHHHHHcCCeeeeeeccCC--CHHHHHHhhh--hccEEEE-CCchHHHH
Confidence 3999998888889999999999999876432 2222 3334444432 4566554 55566653
No 152
>PRK04155 chaperone protein HchA; Provisional
Probab=58.58 E-value=25 Score=35.22 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.1
Q ss_pred cCCCceEEEEcCCChHH
Q 011517 164 LSKYDGIVCVSGDGILV 180 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl~ 180 (484)
.++||+|++.||=|.+.
T Consensus 145 ~~dYDaV~iPGG~g~~~ 161 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI 161 (287)
T ss_pred cccccEEEECCCCchHH
Confidence 46899999999988744
No 153
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=58.52 E-value=72 Score=30.23 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=48.8
Q ss_pred cCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccc
Q 011517 117 NPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDA 195 (484)
Q Consensus 117 NP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~ 195 (484)
.|.....--. .+.+-++..+++.|+++.+..+.. ...-.++.+++...++|+|++++.+....++++.+...
T Consensus 6 ~~~~~~~~~~-~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~------ 78 (268)
T cd06289 6 INDLTNPFFA-ELAAGLEEVLEEAGYTVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAES------ 78 (268)
T ss_pred ecCCCcchHH-HHHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhc------
Confidence 3554433222 233567777888888776655433 33334566777667899999998776544566666543
Q ss_pred cCCcEEEe
Q 011517 196 IKVPLGVV 203 (484)
Q Consensus 196 ~~~pigiI 203 (484)
++|+-.+
T Consensus 79 -~ipvV~~ 85 (268)
T cd06289 79 -GIPVVLV 85 (268)
T ss_pred -CCCEEEE
Confidence 5666555
No 154
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=57.62 E-value=78 Score=29.57 Aligned_cols=73 Identities=15% Similarity=0.154 Sum_probs=50.0
Q ss_pred hHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
+.+-++..++..|+++.+..+... ....+.++++...++|+||+.+.+......+.-+... ++|+-.+...+
T Consensus 17 ~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~l~~~-------~ip~v~~~~~~ 89 (264)
T cd01537 17 VLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPTIVKLARKA-------GIPVVLVDRDI 89 (264)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchhHHHHhhhc-------CCCEEEeccCC
Confidence 445777888888998888776643 3455666776667899999999886654444444333 67887776654
Q ss_pred c
Q 011517 208 G 208 (484)
Q Consensus 208 g 208 (484)
.
T Consensus 90 ~ 90 (264)
T cd01537 90 P 90 (264)
T ss_pred C
Confidence 4
No 155
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=57.34 E-value=17 Score=34.85 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=30.7
Q ss_pred HHhhcCCCceEEEEcCCChH---------------HHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 160 KVLDLSKYDGIVCVSGDGIL---------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGtl---------------~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
.+++.++||+|++.||.|.. ++.+..+++.-. ..+-+++.|=.|. -.+++.+
T Consensus 76 ~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~---~~gK~VaAIChgp-~~L~~~~ 142 (213)
T cd03133 76 AKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFH---QAGKPIGAICIAP-ALAAKIL 142 (213)
T ss_pred HHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHH---HCCCeEEEECHHH-HHHHHHh
Confidence 34455689999999998852 333444433211 1245888886666 3455543
No 156
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.25 E-value=1e+02 Score=30.96 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhhhhcC-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhc
Q 011517 89 EDSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL 164 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~ 164 (484)
.+.++...+.+++.+.... +|+=..|++ |...+...|.+......++.|++++.+.- ..+.+..+..++++.
T Consensus 9 k~vA~~i~~~l~~~v~~l~~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 9 PPAAEAVYAELRARLAKLPFVPHLRVVRL----GEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567777788887776664 454334444 44567778988889999999999877643 234455666667654
Q ss_pred -CCCceEEEE
Q 011517 165 -SKYDGIVCV 173 (484)
Q Consensus 165 -~~~d~IV~v 173 (484)
+..|+|++-
T Consensus 85 D~~V~GIlvq 94 (287)
T PRK14173 85 DPEVDGILVQ 94 (287)
T ss_pred CCCCCEEEEe
Confidence 346787763
No 157
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=57.20 E-value=62 Score=31.05 Aligned_cols=83 Identities=11% Similarity=0.161 Sum_probs=49.7
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh---hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHh
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~---~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~ 187 (484)
+.|++...+..--. .+.+.++..+++.|+++.+..+... ....+..+++...+.|+||+.+.+.. +.+.+..+.
T Consensus 2 igvi~~~~~~~~~~--~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 79 (275)
T cd06320 2 YGVVLKTLSNEFWR--SLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAK 79 (275)
T ss_pred eeEEEecCCCHHHH--HHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHH
Confidence 45666443322211 2234677888888988877655332 22334555665568999998887653 556666665
Q ss_pred cCcCcccccCCcEEEe
Q 011517 188 EREDWNDAIKVPLGVV 203 (484)
Q Consensus 188 ~~~~~~~~~~~pigiI 203 (484)
+. ++|+-.+
T Consensus 80 ~~-------~iPvV~~ 88 (275)
T cd06320 80 KK-------GIPVVNV 88 (275)
T ss_pred HC-------CCeEEEE
Confidence 43 5676555
No 158
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.08 E-value=94 Score=31.35 Aligned_cols=97 Identities=12% Similarity=0.117 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~ 160 (484)
.+.|+...+.+++.+... + +|+=..|.+++ ..+...|.+......++.|++++++. ...+.+..+..+
T Consensus 8 k~~a~~i~~~i~~~v~~l~~~~g~~p~La~i~vg~----~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~ 83 (296)
T PRK14188 8 KAFAADVRATVAAEVARLKAAHGVTPGLAVVLVGE----DPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIA 83 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666777777765542 3 34433455544 45677898888999999999988763 445556666777
Q ss_pred Hhhc-CCCceEEEE---cCCChHHHHHHHHhcC
Q 011517 161 VLDL-SKYDGIVCV---SGDGILVEVVNGLLER 189 (484)
Q Consensus 161 ~~~~-~~~d~IV~v---GGDGtl~evingL~~~ 189 (484)
+++. ...|+|++- -..-.-.++++.+--.
T Consensus 84 ~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~ 116 (296)
T PRK14188 84 RLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE 116 (296)
T ss_pred HHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc
Confidence 7753 356788763 2233334555555433
No 159
>PRK14072 6-phosphofructokinase; Provisional
Probab=57.04 E-value=31 Score=36.52 Aligned_cols=60 Identities=7% Similarity=0.081 Sum_probs=40.2
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.+-.++++.+...+.|.+|++|||||+.-+. .|.+.-. +...++++--||.==-||+.-+
T Consensus 90 ~~~~~~~~~l~~~~Id~LivIGGdgS~~~a~-~L~e~~~-~~g~~i~vIgIPkTIDNDl~gt 149 (416)
T PRK14072 90 AEYERLLEVFKAHDIGYFFYNGGNDSMDTAL-KVSQLAK-KMGYPIRCIGIPKTIDNDLPGT 149 (416)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChHHHHHHH-HHHHHHH-HhCCCceEEEeeecccCCCCCC
Confidence 3445566666666889999999999987543 2322100 0112489999998889999854
No 160
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=56.95 E-value=1.1e+02 Score=30.56 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=51.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++...+.. --.. +.+-+...+++.|+.+.+..+.. .....+..+.+...++|+||+++.+....+.++-
T Consensus 62 ~~~~~Igvv~~~~~~~-~~~~-i~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 139 (342)
T PRK10014 62 GQSGVIGLIVRDLSAP-FYAE-LTAGLTEALEAQGRMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREM 139 (342)
T ss_pred CCCCEEEEEeCCCccc-hHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHH
Confidence 3455677777322211 1111 22456677788888776665543 2233455666666789999999887654455655
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
+... .+|+-.+
T Consensus 140 l~~~-------~iPvV~~ 150 (342)
T PRK10014 140 AEEK-------GIPVVFA 150 (342)
T ss_pred Hhhc-------CCCEEEE
Confidence 5443 5677666
No 161
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=56.86 E-value=74 Score=30.49 Aligned_cols=46 Identities=13% Similarity=0.167 Sum_probs=33.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+.++..+++.|+++.+..+.......++.+.+...+.|+|++++.+
T Consensus 21 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~ 66 (260)
T cd06304 21 EGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQGYDLIFGVGFG 66 (260)
T ss_pred HHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHcCCCEEEECCcc
Confidence 4677778888888777666544445566677766789999999877
No 162
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.80 E-value=51 Score=31.88 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=46.0
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..+.. ...-.+..+++...+.|+||+.+.| +...+.+..+.+. ++|+-++
T Consensus 19 ~gi~~~~~~~G~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (272)
T cd06313 19 QAADEAGKLLGVDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIAR-------GIPVIDM 86 (272)
T ss_pred HHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHC-------CCcEEEe
Confidence 456777788898888876653 2333456666666789999998876 5567777777654 5677666
No 163
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=56.25 E-value=53 Score=31.87 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=44.5
Q ss_pred CCCcEEEEEEcCCCC----CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc----CCCce-EEEEcCCC
Q 011517 107 GRPKRLYIFVNPFGG----KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDG-IVCVSGDG 177 (484)
Q Consensus 107 ~~~~r~lviiNP~sG----~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~----~~~d~-IV~vGGDG 177 (484)
.+|+++.+|||-..= ...+...=.+.++.+|+..|+++.+..=-...+..+.++++.. .++|. ++++-|-|
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~~~sHG 84 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVHVKNNLTAEEMLEELKEFAERPEHSDSDSFVCVLLSHG 84 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhccccCCCCEEEEEEcCCC
Confidence 567888888876542 1222222236899999999999888766666666666655543 25664 44444444
No 164
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.07 E-value=81 Score=30.18 Aligned_cols=66 Identities=12% Similarity=0.097 Sum_probs=41.2
Q ss_pred HhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.++.+++. ....+..+++...++|+||+.+.|.. ..+.+.-+.+. ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~-------~ipvV~~ 86 (277)
T cd06319 19 RGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQA-------KIPVVIA 86 (277)
T ss_pred HHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHC-------CCCEEEE
Confidence 5677778888888877655432 22334455555578999998887754 34555544433 5676554
No 165
>PF01220 DHquinase_II: Dehydroquinase class II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales [, ] and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 3N8K_J 3N7A_I 3N87_F 3N8N_H 3N86_N 1H0S_A 3N59_J 1H05_A 1H0R_A 2Y71_A ....
Probab=55.84 E-value=63 Score=28.81 Aligned_cols=43 Identities=9% Similarity=0.136 Sum_probs=34.4
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++....+.|++++.+.|.+.+...+..++... ++|+||+
T Consensus 30 i~~~~~~~a~~~g~~v~~~QSN~EGelid~I~~a~~-~~dgiII 72 (140)
T PF01220_consen 30 IEQKCKETAAELGVEVEFFQSNHEGELIDWIHEARD-DVDGIII 72 (140)
T ss_dssp HHHHHHHHHHHTTEEEEEEE-SSHHHHHHHHHHHTC-TTSEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHHHh-hCCEEEE
Confidence 455677777778999999999999999998888754 4898886
No 166
>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=55.79 E-value=1.6e+02 Score=29.43 Aligned_cols=77 Identities=13% Similarity=-0.040 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.+|..... -++. +.+.++..|++.|+++.... .....+....+.++...+.|.|++.+..+.+..++..+
T Consensus 135 ~~~v~ii~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (340)
T cd06349 135 FKKVAILSVNTD-WGRT---SADIFVKAAEKLGGQVVAHEEYVPGEKDFRPTITRLRDANPDAIILISYYNDGAPIARQA 210 (340)
T ss_pred CcEEEEEecCCh-HhHH---HHHHHHHHHHHcCCEEEEEEEeCCCCCcHHHHHHHHHhcCCCEEEEccccchHHHHHHHH
Confidence 467777775543 2222 23578888999998765322 12244566777777778899999988877888888887
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 211 ~~~ 213 (340)
T cd06349 211 RAV 213 (340)
T ss_pred HHc
Confidence 654
No 167
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=55.38 E-value=64 Score=31.50 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEec
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiIP 204 (484)
..++..+++.|+++.+..+.. +....+..+++...++|+||+.+.|.. +.+.+..+... .+|+-.+=
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~-------~ipvV~~~ 87 (288)
T cd01538 19 PNFEAALKELGAEVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA-------GIPVIAYD 87 (288)
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC-------CCCEEEEC
Confidence 567788888899888877764 333446666666678999999998875 35666655443 56766653
No 168
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=55.30 E-value=47 Score=30.55 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=33.9
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
|...+...|+++|+++.++........ + . ++.++|+||+.||.|+..+
T Consensus 10 ~~~~~~~~l~~~G~~~~~~~~~~~~~~--~-~--~~~~~dgvil~gG~~~~~~ 57 (184)
T cd01743 10 FTYNLVQYLRELGAEVVVVRNDEITLE--E-L--ELLNPDAIVISPGPGHPED 57 (184)
T ss_pred cHHHHHHHHHHcCCceEEEeCCCCCHH--H-H--hhcCCCEEEECCCCCCccc
Confidence 556788889999998887765433221 1 1 2357999999999998653
No 169
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=55.10 E-value=1.3e+02 Score=29.95 Aligned_cols=88 Identities=11% Similarity=0.158 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++.-.... --.. +...+...+++.|+.+.+..+.. .....+..+.+...+.|+||+.+.+..-.+.+..
T Consensus 58 ~~~~~Igvi~~~~~~~-~~~~-~~~~i~~~~~~~gy~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~ 135 (327)
T TIGR02417 58 GRSRTIGLVIPDLENY-SYAR-IAKELEQQCREAGYQLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPEDAYYQK 135 (327)
T ss_pred CCCceEEEEeCCCCCc-cHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHH
Confidence 3456677776322221 1122 23567777888898887766643 2223345556655789999999876533456665
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
|... .+|+-++
T Consensus 136 l~~~-------~iPvV~~ 146 (327)
T TIGR02417 136 LQNE-------GLPVVAL 146 (327)
T ss_pred HHhc-------CCCEEEE
Confidence 5443 5676655
No 170
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.81 E-value=1.2e+02 Score=30.37 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~ 160 (484)
.+.++.+.+.+++.+... ++..++. |.+ |...+...|.+.-...+++.|++++.+.- -.+.+..++.+
T Consensus 9 k~~a~~i~~~~~~~i~~~~~~~~~~p~L~~i~v----g~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~ 84 (283)
T PRK14192 9 KALAKQIEEELSVRVEALKAKTGRTPILATILV----GDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIE 84 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe----CCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 346667777777765543 3333454 555 44556778988889999999999877644 23455667777
Q ss_pred HhhcC-CCceEEE
Q 011517 161 VLDLS-KYDGIVC 172 (484)
Q Consensus 161 ~~~~~-~~d~IV~ 172 (484)
++..+ ++++|.+
T Consensus 85 ~Ln~d~~v~Gi~V 97 (283)
T PRK14192 85 ELNANPDVHGILL 97 (283)
T ss_pred HHhCCCCCCEEEE
Confidence 77654 5777665
No 171
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=54.79 E-value=1e+02 Score=29.93 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=43.0
Q ss_pred HHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.+...+++.|+++.+..+. ....-.++.+.+...++|+||+.+.|.. ..+.+..+... ++|+-++
T Consensus 19 ~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~-------~iPvV~~ 87 (280)
T cd06315 19 GEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQKA-------GIPVVGW 87 (280)
T ss_pred HHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHC-------CCCEEEe
Confidence 356777788888877666554 2233345666776789999999988743 23445544332 5677666
No 172
>PLN02335 anthranilate synthase
Probab=54.56 E-value=49 Score=31.72 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=45.5
Q ss_pred hhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 104 ~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
++....++++||=|-.| |...+...|++.|++++++..... .+. ++...++|+||+.||-|..++.
T Consensus 13 ~~~~~~~~ilviD~~ds--------ft~~i~~~L~~~g~~~~v~~~~~~-~~~----~~~~~~~d~iVisgGPg~p~d~ 78 (222)
T PLN02335 13 NSSKQNGPIIVIDNYDS--------FTYNLCQYMGELGCHFEVYRNDEL-TVE----ELKRKNPRGVLISPGPGTPQDS 78 (222)
T ss_pred cccCccCcEEEEECCCC--------HHHHHHHHHHHCCCcEEEEECCCC-CHH----HHHhcCCCEEEEcCCCCChhhc
Confidence 34456778888865432 334688889999999988865321 222 2233478999999999998864
No 173
>PRK06490 glutamine amidotransferase; Provisional
Probab=54.51 E-value=17 Score=35.36 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
..+|++||.|-.++. ...+...|+..|.+++++.....+. +-. ++++||+||+.||=++++
T Consensus 6 ~~~~vlvi~h~~~~~-------~g~l~~~l~~~g~~~~v~~~~~~~~---~p~--~l~~~dgvii~Ggp~~~~ 66 (239)
T PRK06490 6 DKRPVLIVLHQERST-------PGRVGQLLQERGYPLDIRRPRLGDP---LPD--TLEDHAGAVIFGGPMSAN 66 (239)
T ss_pred CCceEEEEecCCCCC-------ChHHHHHHHHCCCceEEEeccCCCC---CCC--cccccCEEEEECCCCCCC
Confidence 457899998876553 2467778889999988875432211 111 245799999999988754
No 174
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=54.24 E-value=20 Score=32.83 Aligned_cols=41 Identities=20% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCChH--------HHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 165 SKYDGIVCVSGDGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl--------~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
..||.|++.||.+.. .+.+...++ ...+|+-|-.|+. .||.
T Consensus 75 ~~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~-------~~k~i~~ic~G~~-~La~ 123 (180)
T cd03169 75 DDYDALVIPGGRAPEYLRLDEKVLAIVRHFAE-------ANKPVAAICHGPQ-ILAA 123 (180)
T ss_pred hHCCEEEEcCCCChhhhccCHHHHHHHHHHHH-------cCCEEEEECcHHH-HHHH
Confidence 368999999997753 222222222 2568888888775 3443
No 175
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=54.21 E-value=1.2e+02 Score=29.14 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV 161 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~ 161 (484)
++..|.|.++|-||.-- .-.+.-.|...|.++-++.+..++++..+.+.
T Consensus 2 ~iI~v~n~KGGvGKTT~--a~nLA~~la~~G~~VlliD~DpQ~s~~~w~~~ 50 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTA--LMGLCAALASDGKRVALFEADENRPLTRWKEN 50 (231)
T ss_pred eEEEEECCCCCccHHHH--HHHHHHHHHhCCCcEEEEeCCCCCCHHHHHHh
Confidence 57889999999998753 34678888888988888888888887766543
No 176
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=54.07 E-value=85 Score=31.01 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=42.1
Q ss_pred HhHHHHHHh--cCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLED--ANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~--ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..++. .|+++.+..+.+. ....+..+.+...+.|+||+++.|.. +.++++.+... .+|+-.+
T Consensus 19 ~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (303)
T cd01539 19 KNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQK-------NIPVIFF 88 (303)
T ss_pred HHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHC-------CCCEEEe
Confidence 466777777 6666666555421 12234555666678999999988864 46677766543 5676655
No 177
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=53.79 E-value=22 Score=40.57 Aligned_cols=102 Identities=18% Similarity=0.229 Sum_probs=56.9
Q ss_pred cEEEEEEcCCCCCcch----hhchHHhHHHHHHhcCCeEEEEecCC------hhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011517 110 KRLYIFVNPFGGKKIA----SKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a----~~~~~~~v~p~l~~ag~~~~v~~T~~------~~~a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
-+++-|.|=..|=-+. .++-.+.|..++..-|- +.-|.+ ...-..+++.+...+.|.+|++|||||+
T Consensus 31 ~~V~gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~~~~~~~~~~L~~~~Id~LivIGGdgS~ 107 (745)
T TIGR02478 31 CRVYAIREGYQGLVDGGDNIEEANWEDVRGILSLGGT---IIGTARCKEFRERPGRLKAARNLIKRGIDNLVVIGGDGSL 107 (745)
T ss_pred CEEEEEecCHHHHhcCCCCeEECCHHHHhhHHhCCCc---eecCCCCCcccCHHHHHHHHHHHHHhCCCEEEEECChhHH
Confidence 3566666655553222 11112356666665552 222221 1122455666666789999999999998
Q ss_pred HHHH----------HHHhcC-----cCcccccCCcEEEecCCCchhhhhh
Q 011517 180 VEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 180 ~evi----------ngL~~~-----~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.-+. .-|.+. ...+....+++--||.==-||+.-+
T Consensus 108 ~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gT 157 (745)
T TIGR02478 108 TGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGT 157 (745)
T ss_pred HHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCC
Confidence 6543 222211 1111233688999996668999853
No 178
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.71 E-value=97 Score=30.58 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=44.2
Q ss_pred HhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcC--CCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLS--KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~--~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
..++..+++.|+++.+..+.... ...+.++.+... +.|+||+.+.+-...++++.+... ++|+-++
T Consensus 20 ~gi~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~-------giPvV~~ 88 (305)
T cd06324 20 RFMQAAADDLGIELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGA-------GVKLFLV 88 (305)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhC-------CCeEEEE
Confidence 46777788888888776665322 233555666656 899999988765455666666553 5677666
No 179
>COG0014 ProA Gamma-glutamyl phosphate reductase [Amino acid transport and metabolism]
Probab=53.63 E-value=24 Score=36.76 Aligned_cols=94 Identities=24% Similarity=0.395 Sum_probs=70.3
Q ss_pred HhHHHHHHhcCCe---EEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 131 DDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 131 ~~v~p~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
+-++.-|..+++. ++.+.+++.....++.+ ++ +-.|.||-=||-|.+..|.+. -++| +|-.|.
T Consensus 160 ~~i~~aL~~~~lP~~aVqli~~~~R~~v~~ll~-l~-~yiD~iIPRGg~~Li~~v~~~----------a~vP--Vi~~~~ 225 (417)
T COG0014 160 EVIQEALEKAGLPADAVQLIEDTDREEVLELLR-LD-GYIDLVIPRGGAGLIRRVVEN----------ATVP--VIEHGV 225 (417)
T ss_pred HHHHHHHHHcCCCHHHhhhccCCCHHHHHHHHh-hc-CceeEEEcCCcHHHHHHHHhC----------CcCC--EEecCc
Confidence 5677778888864 57778888888888877 33 456999999999988887752 1455 478888
Q ss_pred chhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEE
Q 011517 208 GNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVA 243 (484)
Q Consensus 208 gN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~ 243 (484)
||+-.+- ...-|++.|...+++++++.-++|
T Consensus 226 G~CHiyv-----d~~ADld~A~~ii~nAKtqrPs~C 256 (417)
T COG0014 226 GNCHIYV-----DESADLDKALKIIVNAKTQRPSVC 256 (417)
T ss_pred ceEEEEe-----cccCCHHHHHHHHHcccCCCCccc
Confidence 8875542 455689999999999988766665
No 180
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=53.29 E-value=82 Score=31.32 Aligned_cols=77 Identities=13% Similarity=0.054 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE--EEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.+|.....-. + ...+.++..++.+|+++. +.......+...+++++...+.|.|+++++-+....+++.+
T Consensus 135 ~~~v~iv~~~~~~g-~---~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (343)
T PF13458_consen 135 AKKVAIVYPDDPYG-R---SLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDPADAAAFLRQL 210 (343)
T ss_dssp TSEEEEEEESSHHH-H---HHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTHHHHHHHHHHH
T ss_pred CcEEEEEecCchhh-h---HHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccchhHHHHHHHH
Confidence 67888888653222 2 233578889999998852 33344556667778888777899998888888888999888
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 211 ~~~ 213 (343)
T PF13458_consen 211 RQL 213 (343)
T ss_dssp HHT
T ss_pred Hhh
Confidence 665
No 181
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=53.20 E-value=55 Score=33.79 Aligned_cols=51 Identities=25% Similarity=0.287 Sum_probs=37.3
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
...++.+...+.|.+|++|||||..-.. -|.+. ..+++-=||.==-||+..
T Consensus 84 ~~~~~~l~~~gId~LvvIGGDgS~~gA~-~Lae~------~~i~vVGvPkTIDNDi~~ 134 (347)
T COG0205 84 KVAAENLKKLGIDALVVIGGDGSYTGAA-LLAEE------GGIPVVGVPKTIDNDISG 134 (347)
T ss_pred HHHHHHHHHcCCCEEEEECCCChHHHHH-HHHHh------cCCcEEecCCCccCCCcc
Confidence 3455666667899999999999977543 23332 137888899888999984
No 182
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=52.90 E-value=43 Score=38.22 Aligned_cols=100 Identities=18% Similarity=0.257 Sum_probs=57.9
Q ss_pred cEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+++-|.|=+.|=-+. .+.=...+..+...-|. +.-|.+ ..+...+++.+...+.|++|++|||||+.-+..
T Consensus 420 ~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt---~LgtsR~~~~~~~~~i~~~l~~~~Id~LivIGGdgs~~~a~~ 496 (745)
T TIGR02478 420 HTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGS---ELGTNRELPGKDLGMIAYYFQKHKIDGLLIIGGFEAFEALLQ 496 (745)
T ss_pred CEEEEEecChhhhccCCeecCCHHHHHHHHhcCCc---ccccCCCCchhHHHHHHHHHHHcCCCEEEEeCChHHHHHHHH
Confidence 3555565555443221 11111345555555443 222332 235566777777778999999999999875432
Q ss_pred HHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
|.+..+.-....+|+-.||.==-||+.-
T Consensus 497 -L~~~~~~~~~~~i~vvgIPkTIDNDi~g 524 (745)
T TIGR02478 497 -LEQAREKYPAFRIPMVVIPATISNNVPG 524 (745)
T ss_pred -HHHHHhhCCCCCccEEEecccccCCCCC
Confidence 2221100012468999999999999974
No 183
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=52.82 E-value=25 Score=32.04 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=54.7
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC--CChHHHHHHHHhc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLLE 188 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG--DGtl~evingL~~ 188 (484)
|.||++-..-|+ ..++- +.++.-|.+.|+++++..... + .++++++||.||+..- -|=+|+.++.++.
T Consensus 2 k~LIlYstr~Gq--T~kIA-~~iA~~L~e~g~qvdi~dl~~------~-~~~~l~~ydavVIgAsI~~~h~~~~~~~Fv~ 71 (175)
T COG4635 2 KTLILYSTRDGQ--TRKIA-EYIASHLRESGIQVDIQDLHA------V-EEPALEDYDAVVIGASIRYGHFHEAVQSFVK 71 (175)
T ss_pred ceEEEEecCCCc--HHHHH-HHHHHHhhhcCCeeeeeehhh------h-hccChhhCceEEEecchhhhhhHHHHHHHHH
Confidence 678888766664 44544 688999999999998864322 2 2367789999887543 4667788887776
Q ss_pred CcCcccccCCcEEEec
Q 011517 189 REDWNDAIKVPLGVVP 204 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP 204 (484)
+.. +.-...|.+++-
T Consensus 72 k~~-e~L~~kP~A~f~ 86 (175)
T COG4635 72 KHA-EALSTKPSAFFS 86 (175)
T ss_pred HHH-HHHhcCCceEEE
Confidence 532 122345666653
No 184
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=52.80 E-value=1.2e+02 Score=28.29 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=44.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.+-++..++..|+++.+....... ...+.++.+...++|+||+.+.|.+-.. +.-+... ++|+-.+
T Consensus 17 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~-------~ipvv~~ 84 (264)
T cd06267 17 LLRGIEEAAREAGYSVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDEL-LEELAAL-------GIPVVLV 84 (264)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHc-------CCCEEEe
Confidence 3356777777788888776655432 2345666666678999999999987655 4444433 5676555
No 185
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=52.50 E-value=1.2e+02 Score=28.85 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=43.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.+-++..+++.|+++.+..+.. .....++.+.+...+.|+||+.+.|.. ..+.+..+... ++|+-.+
T Consensus 18 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~-------~iPvV~~ 87 (275)
T cd06317 18 YNKAFQAAAEEDGVEVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQA-------GIPVVIT 87 (275)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHC-------CCcEEEe
Confidence 33577778888999888766543 222334555555568999999888753 35666666543 5665444
No 186
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=52.46 E-value=1e+02 Score=30.33 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=59.8
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
.+.|++...+..--+. +. .-++..+++.|+.+-+..|.+..+..+..+.+...+.|+||+++-+.. .+-+..+.+.
T Consensus 3 ~IGvivp~~~npff~~-ii-~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~~vDGiI~~s~~~~-~~~l~~~~~~- 78 (279)
T PF00532_consen 3 TIGVIVPDISNPFFAE-II-RGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQRRVDGIILASSEND-DEELRRLIKS- 78 (279)
T ss_dssp EEEEEESSSTSHHHHH-HH-HHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHTTSSEEEEESSSCT-CHHHHHHHHT-
T ss_pred EEEEEECCCCCcHHHH-HH-HHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhcCCCEEEEecccCC-hHHHHHHHHc-
Confidence 4566665554433322 33 477888899999988888887777667778887789999999977766 5666666654
Q ss_pred CcccccCCcEEEecCC
Q 011517 191 DWNDAIKVPLGVVPAG 206 (484)
Q Consensus 191 ~~~~~~~~pigiIP~G 206 (484)
++|+-++=.-
T Consensus 79 ------~iPvV~~~~~ 88 (279)
T PF00532_consen 79 ------GIPVVLIDRY 88 (279)
T ss_dssp ------TSEEEEESS-
T ss_pred ------CCCEEEEEec
Confidence 4676665444
No 187
>PLN02884 6-phosphofructokinase
Probab=52.15 E-value=26 Score=37.05 Aligned_cols=99 Identities=12% Similarity=0.141 Sum_probs=59.2
Q ss_pred cEEEEEEcCCCCCcchh--h--chHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIAS--K--IFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~--~--~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
++++-|.|=+.|=-+.. . .-.+.+..++..-|- +.-|.+ .....++++.+...+.|.+|++|||||+.-+.
T Consensus 85 ~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt---~LGtsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~- 160 (411)
T PLN02884 85 KNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGS---LLGVSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGAN- 160 (411)
T ss_pred cEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCc---eeccCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHH-
Confidence 35777777666543322 1 112456666665552 333332 22345677777777899999999999987442
Q ss_pred HHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.|.+.- .....++++--||.==-||+.-
T Consensus 161 ~L~~~~-~~~g~~i~vIGIPkTIDNDi~~ 188 (411)
T PLN02884 161 AIHNEC-RKRKMKVSVVGVPKTIDNDILL 188 (411)
T ss_pred HHHHHH-HHcCCCceEEeccccccCCCcC
Confidence 222210 0012358999999988999874
No 188
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=51.98 E-value=1.4e+02 Score=28.35 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=43.3
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+.+.++.+.. ...-.++.+.+...+.|+||+.+.|..- +.++.|... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~-------~ipvV~~ 84 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKR-------GIPVVFV 84 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhC-------CCCEEEE
Confidence 467777888898888776643 3333455566666789999999887653 455666543 5666555
No 189
>PRK05670 anthranilate synthase component II; Provisional
Probab=51.93 E-value=33 Score=31.80 Aligned_cols=49 Identities=22% Similarity=0.265 Sum_probs=34.9
Q ss_pred chHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 128 ~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
.|-..+...|.+.|++++++.....+ ..++ +. .++|+||+.||-|+.++
T Consensus 10 ~f~~~i~~~l~~~g~~~~v~~~~~~~-~~~~-~~---~~~dglIlsgGpg~~~d 58 (189)
T PRK05670 10 SFTYNLVQYLGELGAEVVVYRNDEIT-LEEI-EA---LNPDAIVLSPGPGTPAE 58 (189)
T ss_pred chHHHHHHHHHHCCCcEEEEECCCCC-HHHH-Hh---CCCCEEEEcCCCCChHH
Confidence 35567888999999998887654322 2222 22 24899999999999876
No 190
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=51.83 E-value=90 Score=30.18 Aligned_cols=66 Identities=12% Similarity=0.052 Sum_probs=43.3
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evingL~~~~~~~~~~~~pigiI 203 (484)
+-+...+++.|+++.+..+.......+..+.+...+.|+||+.+-|... -++++.+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~~-------~iPvV~~ 85 (289)
T cd01540 19 KFAKKAAKEKGFTVVKIDVPDGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKAY-------NMKVVAV 85 (289)
T ss_pred HHHHHHHHHcCCEEEEccCCCHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHhC-------CCeEEEe
Confidence 4677888888988877656533333344555555789999999988533 3456666543 5676555
No 191
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=51.77 E-value=48 Score=32.18 Aligned_cols=97 Identities=11% Similarity=0.150 Sum_probs=61.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc-CCCce-EEEEcCCChHHHHHHHHhc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL-SKYDG-IVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~-~~~d~-IV~vGGDGtl~evingL~~ 188 (484)
++..|+|+++|-||.--.. -+.-.|.+.|-.+.++.+....+..+..+.... +.++. +.+.++| ... .+...++
T Consensus 2 ~vItf~s~KGGaGKTT~~~--~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~-e~~-~l~~~~e 77 (231)
T PF07015_consen 2 PVITFASSKGGAGKTTAAM--ALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEAD-ELT-ILEDAYE 77 (231)
T ss_pred CeEEEecCCCCCcHHHHHH--HHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEecc-chh-hHHHHHH
Confidence 5789999999999986443 688889999999999999999999888776532 23443 3333333 222 2222222
Q ss_pred CcCcccccCCcEEEecC-CCchhhhhh
Q 011517 189 REDWNDAIKVPLGVVPA-GTGNGMIKS 214 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~-GSgN~~A~s 214 (484)
..+ .....+.+|=. |++|-++..
T Consensus 78 ~a~---~~~~d~VlvDleG~as~~~~~ 101 (231)
T PF07015_consen 78 AAE---ASGFDFVLVDLEGGASELNDY 101 (231)
T ss_pred HHH---hcCCCEEEEeCCCCCchhHHH
Confidence 111 11345566655 666655543
No 192
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=51.74 E-value=30 Score=30.24 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=36.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh------hH---HHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LH---AKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~------~~---a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+|+.|++.|..- ... + ..+...|..++++++++-.+.. +- +..-..+.+...||.|++.||.+...
T Consensus 2 ~~v~ill~~g~~---~~e-~-~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~ 76 (142)
T cd03132 2 RKVGILVADGVD---AAE-L-SALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAF 76 (142)
T ss_pred CEEEEEEcCCcC---HHH-H-HHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHH
Confidence 567788877321 121 2 2567778888888777543321 00 00001122223589999999988643
No 193
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.72 E-value=1.4e+02 Score=28.43 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=42.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
..++..+++.|+++.+..+.... .-.++.+.+...++|+||++..|-. ...++.+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~i 84 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELT-SAQRAALRRT-------GIPFVVV 84 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcC-------CCCEEEE
Confidence 56777888889888777665433 2335566666678999999887744 2445555433 5666554
No 194
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=51.71 E-value=79 Score=27.74 Aligned_cols=72 Identities=10% Similarity=-0.062 Sum_probs=48.9
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
.++-|+.+-..+ +-.+-+..+|+.+|+++ +.+.......++++.+...+.|.|++++=|++--+.+..+++.
T Consensus 5 v~~a~~g~D~Hd---~g~~iv~~~l~~~GfeV--i~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~ 76 (132)
T TIGR00640 5 ILVAKMGQDGHD---RGAKVIATAYADLGFDV--DVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKE 76 (132)
T ss_pred EEEEeeCCCccH---HHHHHHHHHHHhCCcEE--EECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHH
Confidence 355566553333 33467899999999754 4455444556777777667899999999999776666666553
No 195
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=51.70 E-value=1.5e+02 Score=28.06 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.+|..... .+. . ..+-++..++++|+++..... ........+++++...+.|.|++++.+.....+++.+
T Consensus 136 ~~~v~iv~~~~~-~~~--~-~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 211 (299)
T cd04509 136 WKKVAILYDDDS-YGR--G-LLEAFKAAFKKKGGTVVGEEYYPLGTTDFTSLLQKLKAAKPDVIVLCGSGEDAATILKQA 211 (299)
T ss_pred CcEEEEEecCch-HHH--H-HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcccchHHHHHHHHH
Confidence 467877776554 222 2 235677788888877643322 2223456667777555678888877668888888887
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 212 ~~~ 214 (299)
T cd04509 212 AEA 214 (299)
T ss_pred HHc
Confidence 664
No 196
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.25 E-value=1.4e+02 Score=30.11 Aligned_cols=81 Identities=19% Similarity=0.280 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~---~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (484)
.+.++.+.+.+++.+... + +|+=..|.+ |...+...|.+......++.|++++.+.-. .+.+..+..++
T Consensus 10 k~iA~~i~~~lk~~i~~l~~~g~~P~LaiI~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~ 85 (301)
T PRK14194 10 KAAAARVLAQVREDVRTLKAAGIEPALAVILV----GNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAE 85 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 446677777777776543 3 343334555 444577789888888999999999776553 34455556666
Q ss_pred hhc-CCCceEEEE
Q 011517 162 LDL-SKYDGIVCV 173 (484)
Q Consensus 162 ~~~-~~~d~IV~v 173 (484)
++. ...|+|++-
T Consensus 86 lN~D~~V~GIlvq 98 (301)
T PRK14194 86 LNADPSVNGILLQ 98 (301)
T ss_pred HcCCCCCCeEEEe
Confidence 643 356777763
No 197
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=51.21 E-value=1.5e+02 Score=28.16 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=41.8
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.+...+++.|+.+.+..+++ +....+.++.+...+.|+|++++.+.. ..++..|.+. ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYDLDREYAQARKLLERGVDGLALIGLDHS-PALLDLLARR-------GVPYVAT 84 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHhC-------CCCEEEE
Confidence 567788888898877765544 233445666666668999999987654 3445544433 5666444
No 198
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=50.69 E-value=79 Score=29.76 Aligned_cols=65 Identities=15% Similarity=0.289 Sum_probs=36.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
...|+ +++-..++... -+.+.....|+..|++...........-.++.+.+ ...|+|++.|||=.
T Consensus 28 ~~~~i-~~iptA~~~~~---~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l--~~ad~I~~~GG~~~ 92 (210)
T cd03129 28 AGARV-LFIPTASGDRD---EYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL--LEADGIFVGGGNQL 92 (210)
T ss_pred CCCeE-EEEeCCCCChH---HHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH--hhCCEEEEcCCcHH
Confidence 34444 44444444421 23357788888889876544332212223444444 46799999998854
No 199
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.39 E-value=1.6e+02 Score=29.54 Aligned_cols=79 Identities=11% Similarity=0.182 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEE-EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhc-
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL- 164 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~-lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~- 164 (484)
+.|+.-.+.+++.+...++..++ .|.+ |...+...|.+......++.|++++.+... .+.+..+..++++.
T Consensus 7 ~iA~~i~~~~k~~v~~l~~~P~LaiI~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d 82 (287)
T PRK14181 7 PAAEHILATIKENISASSTAPGLAVVLI----GNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNND 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34555566666666655544445 4555 445677789988899999999998876543 34455666677653
Q ss_pred CCCceEEE
Q 011517 165 SKYDGIVC 172 (484)
Q Consensus 165 ~~~d~IV~ 172 (484)
...|+|++
T Consensus 83 ~~V~GIlv 90 (287)
T PRK14181 83 PNIHGILV 90 (287)
T ss_pred CCCCeEEE
Confidence 35677776
No 200
>PRK07308 flavodoxin; Validated
Probab=50.33 E-value=77 Score=27.86 Aligned_cols=87 Identities=23% Similarity=0.183 Sum_probs=47.5
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHHh
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLL 187 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL~ 187 (484)
++.|++=..+ |.+.++ .+.+...|...|+++++........ . ++.++|.|+++. |+|.+.+-+..++
T Consensus 3 ~~~IvY~S~t--GnTe~i-A~~ia~~l~~~g~~~~~~~~~~~~~-----~--~l~~~d~vi~g~~t~g~G~~p~~~~~fl 72 (146)
T PRK07308 3 LAKIVYASMT--GNTEEI-ADIVADKLRELGHDVDVDECTTVDA-----S--DFEDADIAIVATYTYGDGELPDEIVDFY 72 (146)
T ss_pred eEEEEEECCC--chHHHH-HHHHHHHHHhCCCceEEEecccCCH-----h--HhccCCEEEEEeCccCCCCCCHHHHHHH
Confidence 5677774444 445543 4678888888888887765443221 1 235688877765 7786654333232
Q ss_pred cCcCcccccCCcEEEecCCC
Q 011517 188 EREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GS 207 (484)
..-........+++++=.|.
T Consensus 73 ~~l~~~~l~~k~~~vfG~Gd 92 (146)
T PRK07308 73 EDLADLDLSGKIYGVVGSGD 92 (146)
T ss_pred HHHhcCCCCCCEEEEEeeCC
Confidence 21100111245666665543
No 201
>PRK13566 anthranilate synthase; Provisional
Probab=49.99 E-value=2.7e+02 Score=31.85 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=40.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
++++++||-|=.+ |...+...|+..|.++.++...... ++ ++..++|+||+.||-|...
T Consensus 525 ~g~~IlvID~~ds--------f~~~l~~~Lr~~G~~v~vv~~~~~~---~~---~~~~~~DgVVLsgGpgsp~ 583 (720)
T PRK13566 525 EGKRVLLVDHEDS--------FVHTLANYFRQTGAEVTTVRYGFAE---EM---LDRVNPDLVVLSPGPGRPS 583 (720)
T ss_pred CCCEEEEEECCCc--------hHHHHHHHHHHCCCEEEEEECCCCh---hH---hhhcCCCEEEECCCCCChh
Confidence 4567777765421 3357888899999988877665432 22 2334799999999998754
No 202
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=49.89 E-value=70 Score=26.29 Aligned_cols=73 Identities=11% Similarity=0.222 Sum_probs=42.9
Q ss_pred CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcE
Q 011517 121 GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (484)
Q Consensus 121 G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pi 200 (484)
|.|-+...+.++++..+++.|+++++..+.-. .+. .. ..+||.|++.-==.-..+-+...... .+.|+
T Consensus 7 g~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~-~~~---~~--~~~~Diil~~Pqv~~~~~~i~~~~~~------~~~pv 74 (96)
T cd05564 7 SAGMSTSILVKKMKKAAEKRGIDAEIEAVPES-ELE---EY--IDDADVVLLGPQVRYMLDEVKKKAAE------YGIPV 74 (96)
T ss_pred CCCchHHHHHHHHHHHHHHCCCceEEEEecHH-HHH---Hh--cCCCCEEEEChhHHHHHHHHHHHhcc------CCCcE
Confidence 44555556778999999999999888665443 222 12 25789766532111111112222221 36899
Q ss_pred EEecC
Q 011517 201 GVVPA 205 (484)
Q Consensus 201 giIP~ 205 (484)
.+||.
T Consensus 75 ~~I~~ 79 (96)
T cd05564 75 AVIDM 79 (96)
T ss_pred EEcCh
Confidence 99996
No 203
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=49.05 E-value=1e+02 Score=29.10 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+.+.+..+.+ .....+..+++...++|+|++++-+.. ..+.+..+... ++|+-.+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~-------~ipvv~~ 86 (268)
T cd06323 19 DGAQKEAKELGYELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA-------GIPVFTI 86 (268)
T ss_pred HHHHHHHHHcCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC-------CCcEEEE
Confidence 577888888898887766643 223345666666678999998765433 23555555443 5676555
No 204
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.97 E-value=1.7e+02 Score=29.39 Aligned_cols=80 Identities=20% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~ 160 (484)
.+.|+...+.+++.+... + +|+=..|.++ ...|.+.|.+......++.|++++.+.-. .+.+..+..+
T Consensus 14 k~iA~~i~~~l~~~i~~l~~~~g~~P~Laii~vg----~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~ 89 (287)
T PRK14176 14 KALAKKIEAEVRSGVERLKSNRGITPGLATILVG----DDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELID 89 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEEC----CCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666666666665433 3 3433345554 44577789999999999999998775443 3455566667
Q ss_pred Hhhc-CCCceEEE
Q 011517 161 VLDL-SKYDGIVC 172 (484)
Q Consensus 161 ~~~~-~~~d~IV~ 172 (484)
+++. .+.|+|++
T Consensus 90 ~LN~D~~V~GIlv 102 (287)
T PRK14176 90 SLNKRKDVHGILL 102 (287)
T ss_pred HHhCCCCCCeEEE
Confidence 7753 35678776
No 205
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.87 E-value=1.8e+02 Score=29.20 Aligned_cols=80 Identities=16% Similarity=0.223 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~---~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (484)
.+.++.+.+.+++.+... + +|+=..|.+ |...+...|.+......++.|++++.+.-. .+.+..+..++
T Consensus 9 k~va~~i~~~lk~~i~~l~~~g~~p~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 84 (285)
T PRK14189 9 NALSKQLRAEAAQRAAALTARGHQPGLAVILV----GDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDE 84 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEe----CCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 346677777777766543 3 343334555 444567789999999999999999876533 35556666677
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. ...|+|++
T Consensus 85 lN~d~~V~GIlv 96 (285)
T PRK14189 85 LNRDPKIHGILV 96 (285)
T ss_pred HcCCCCCCeEEE
Confidence 654 35677776
No 206
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=48.49 E-value=99 Score=29.31 Aligned_cols=84 Identities=12% Similarity=0.143 Sum_probs=54.8
Q ss_pred EEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE-ecCChhH-HHHHHHHhhcCCCceEEEEcCCC-hHHHHHHHHhcCcC
Q 011517 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG-ILVEVVNGLLERED 191 (484)
Q Consensus 115 iiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDG-tl~evingL~~~~~ 191 (484)
|+.|..+..- ...+.+-++...++.|+++.+. ......+ -.+.++++...++|+||+..-|. .+.++++.+...
T Consensus 3 vi~~~~~~~~-~~~~~~g~~~~a~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~-- 79 (257)
T PF13407_consen 3 VIVPSMDNPF-WQQVIKGAKAAAKELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA-- 79 (257)
T ss_dssp EEESSSSSHH-HHHHHHHHHHHHHHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT--
T ss_pred EEeCCCCCHH-HHHHHHHHHHHHHHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc--
Confidence 5566666542 2234467788888889988885 3333222 23455666567899999998887 466788877664
Q ss_pred cccccCCcEEEecCC
Q 011517 192 WNDAIKVPLGVVPAG 206 (484)
Q Consensus 192 ~~~~~~~pigiIP~G 206 (484)
++|+-.+=.+
T Consensus 80 -----gIpvv~~d~~ 89 (257)
T PF13407_consen 80 -----GIPVVTVDSD 89 (257)
T ss_dssp -----TSEEEEESST
T ss_pred -----CceEEEEecc
Confidence 6777775444
No 207
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=48.43 E-value=1.8e+02 Score=27.38 Aligned_cols=53 Identities=15% Similarity=0.066 Sum_probs=34.2
Q ss_pred HHHhcCCeEEEEecCChhHHHHHHH------------HhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 136 LLEDANIQFTVQETTQQLHAKEIVK------------VLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 136 ~l~~ag~~~~v~~T~~~~~a~~l~~------------~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.|.++|.++.++..+......+++. ..++.++|.||++-+|..+|+.+-....
T Consensus 28 ~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~~~a~ 92 (202)
T PRK06718 28 TLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVKEDLP 92 (202)
T ss_pred HHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHHHHHH
Confidence 3444666666665443333344433 2235678999999999999999876664
No 208
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=48.25 E-value=1.5e+02 Score=29.80 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=51.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcC-CeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag-~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evi 183 (484)
..++.+.|+++-.+...- .+ +.+-+...+++.| +.+.+..+.. .....+..+.+...+.|+||+++.|.. ..+++
T Consensus 22 ~~~~~Igvv~~~~~~~f~-~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l 99 (330)
T PRK15395 22 AADTRIGVTIYKYDDNFM-SV-VRKAIEKDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVI 99 (330)
T ss_pred cCCceEEEEEecCcchHH-HH-HHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 456778887754332221 12 2345666777764 4444433332 222334556666678999999988865 45566
Q ss_pred HHHhcCcCcccccCCcEEEec
Q 011517 184 NGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP 204 (484)
+-+... .+|+-.+-
T Consensus 100 ~~l~~~-------giPvV~vd 113 (330)
T PRK15395 100 EKARGQ-------DVPVVFFN 113 (330)
T ss_pred HHHHHC-------CCcEEEEc
Confidence 665543 57776663
No 209
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=48.22 E-value=91 Score=28.95 Aligned_cols=55 Identities=9% Similarity=0.096 Sum_probs=38.7
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH
Q 011517 98 KLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH 154 (484)
Q Consensus 98 ~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~ 154 (484)
.|+..|.-..+..|++.|.++.+|-||.. ....+...|...|.++-++....++.
T Consensus 5 ~l~~~l~~~~~~~kvI~v~s~kgG~GKTt--~a~~LA~~la~~G~rVllID~D~~~~ 59 (204)
T TIGR01007 5 AIRTNIQFSGAEIKVLLITSVKPGEGKST--TSANIAVAFAQAGYKTLLIDGDMRNS 59 (204)
T ss_pred HHHHHHhhhcCCCcEEEEecCCCCCCHHH--HHHHHHHHHHhCCCeEEEEeCCCCCh
Confidence 34444433334477899999999999875 33478888999999888777665443
No 210
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.98 E-value=1.8e+02 Score=29.09 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~ 160 (484)
.+.++.+.+.+++.+... ++..++. |.+ |...+...|.+......++.|++++.+.-. .+.+..+..+
T Consensus 8 k~ia~~i~~~lk~~v~~l~~~~g~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~ 83 (284)
T PRK14179 8 KALAQKMQAELAEKVAKLKEEKGIVPGLVVILV----GDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIE 83 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCceEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345667777777765543 2333444 555 444567789888889999999998775443 3455556666
Q ss_pred Hhhc-CCCceEEE
Q 011517 161 VLDL-SKYDGIVC 172 (484)
Q Consensus 161 ~~~~-~~~d~IV~ 172 (484)
+++. ...|+|++
T Consensus 84 ~lN~d~~V~GIiv 96 (284)
T PRK14179 84 RYNQDPTWHGILV 96 (284)
T ss_pred HHhCCCCCCEEEE
Confidence 6653 35678776
No 211
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=47.86 E-value=1.2e+02 Score=28.81 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=41.6
Q ss_pred HhHHHHHHh-cCCeEEEEecC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLED-ANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~-ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++ .|+++.+..+. ......+..+++...+.|+||+.+.|.. ..+++.-|.+. ++|+-.+
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~-------~iPvv~~ 87 (272)
T cd06301 19 NAMKEHAKVLGGVELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAA-------GIPLVYV 87 (272)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 456677777 77777765553 2233344555655568999999988854 34666666554 5676655
No 212
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=47.80 E-value=20 Score=33.07 Aligned_cols=49 Identities=27% Similarity=0.452 Sum_probs=35.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
|...+...|++.+++++++.-... ..+... +..+||+||+.||=|...+
T Consensus 9 ~~~~l~~~l~~~~~~~~v~~~~~~--~~~~~~--~~~~~d~iii~Gg~~~~~d 57 (192)
T PF00117_consen 9 FTHSLVRALRELGIDVEVVRVDSD--FEEPLE--DLDDYDGIIISGGPGSPYD 57 (192)
T ss_dssp THHHHHHHHHHTTEEEEEEETTGG--HHHHHH--HTTTSSEEEEECESSSTTS
T ss_pred HHHHHHHHHHHCCCeEEEEECCCc--hhhhhh--hhcCCCEEEECCcCCcccc
Confidence 445788899999998888765542 222222 4678999999999888775
No 213
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=47.38 E-value=1.7e+02 Score=29.82 Aligned_cols=102 Identities=19% Similarity=0.282 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCC
Q 011517 88 SEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY 167 (484)
Q Consensus 88 ~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~ 167 (484)
|....++-++-++..+ +.-|++-+++||..-.-.. ..++++..++.+|+++......+.++....++.+. ++.
T Consensus 141 D~~~v~q~i~lik~~~---Pnak~Igv~Y~p~E~ns~~---l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~-g~~ 213 (322)
T COG2984 141 DLLPVAQQIELIKALL---PNAKSIGVLYNPGEANSVS---LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALL-GKV 213 (322)
T ss_pred CcchHHHHHHHHHHhC---CCCeeEEEEeCCCCcccHH---HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhc-CCC
Confidence 3333444555555554 5568999999998654332 33689999999999987777777777777766665 667
Q ss_pred ceEEEEcCCChHHHHHHHHhcCcCcccccCCcE
Q 011517 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPL 200 (484)
Q Consensus 168 d~IV~vGGDGtl~evingL~~~~~~~~~~~~pi 200 (484)
|.|. +-=|-|++-.++.|+.... ..++|+
T Consensus 214 d~i~-~p~dn~i~s~~~~l~~~a~---~~kiPl 242 (322)
T COG2984 214 DVIY-IPTDNLIVSAIESLLQVAN---KAKIPL 242 (322)
T ss_pred cEEE-EecchHHHHHHHHHHHHHH---HhCCCe
Confidence 7655 4679999999999887632 235565
No 214
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=47.30 E-value=2e+02 Score=28.91 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=56.7
Q ss_pred HHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----hhHHHHHHHHhhcCCCceEE
Q 011517 96 CEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIV 171 (484)
Q Consensus 96 ~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----~~~a~~l~~~~~~~~~d~IV 171 (484)
..++-+.+... ..+++.+|..... -++. ..+.++..+++.|+++.....-. ..+....++++...+.|.|+
T Consensus 123 ~~a~~~~~~~~-~~~~v~ii~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi 197 (350)
T cd06366 123 NPAIAALLKKF-GWRRVATIYEDDD-YGSG---GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIV 197 (350)
T ss_pred HHHHHHHHHHC-CCcEEEEEEEcCc-ccch---hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEE
Confidence 33343444332 3467877764443 1222 22567788999998876544322 24566677777666789999
Q ss_pred EEcCCChHHHHHHHHhcC
Q 011517 172 CVSGDGILVEVVNGLLER 189 (484)
Q Consensus 172 ~vGGDGtl~evingL~~~ 189 (484)
+++.......++..+.+.
T Consensus 198 ~~~~~~~~~~~~~~a~~~ 215 (350)
T cd06366 198 VHFSPDLARRVFCEAYKL 215 (350)
T ss_pred EECChHHHHHHHHHHHHc
Confidence 988888888888887665
No 215
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.10 E-value=1.7e+02 Score=29.23 Aligned_cols=77 Identities=21% Similarity=0.209 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE---ecCChhHHHHHHHHhhc-CCCceEEEE---cCCChHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ---ETTQQLHAKEIVKVLDL-SKYDGIVCV---SGDGILV 180 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~---~T~~~~~a~~l~~~~~~-~~~d~IV~v---GGDGtl~ 180 (484)
+|+=..|+++ ...|...|.+......++.|++++.+ +...+.+..+..++++. ...|+|++- -..-.-+
T Consensus 31 ~P~La~I~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~ 106 (282)
T PRK14180 31 TPKLVAIIVG----NDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKN 106 (282)
T ss_pred CCeEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHH
Confidence 4544455554 44567789988999999999999887 44445666677777754 346777763 2333344
Q ss_pred HHHHHHhc
Q 011517 181 EVVNGLLE 188 (484)
Q Consensus 181 evingL~~ 188 (484)
++++.+--
T Consensus 107 ~i~~~I~p 114 (282)
T PRK14180 107 NVIYSIKP 114 (282)
T ss_pred HHHhhcCc
Confidence 55555433
No 216
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.67 E-value=1.4e+02 Score=28.54 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=44.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
+-++..+++.|+++.+..+....+ ..+..+.+...+.|+||+.+++....++++.+... ++|+-++-..
T Consensus 19 ~~i~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~-------~ipvV~i~~~ 88 (269)
T cd06281 19 SGAEDRLRAAGYSLLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERDPELVDALASL-------DLPIVLLDRD 88 (269)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhC-------CCCEEEEecc
Confidence 577788888898887776654332 34556666667899999998764333445444332 5677776443
No 217
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=46.58 E-value=1.6e+02 Score=27.89 Aligned_cols=66 Identities=18% Similarity=0.159 Sum_probs=42.8
Q ss_pred HhHHHHHHhcCCeEEEEecCChh--HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~--~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+..+.... ...++.+.+...++|+||+.+++....+.++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~-------~ipvv~i 86 (270)
T cd01545 19 LGALDACRDTGYQLVIEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA-------GVPYVRI 86 (270)
T ss_pred HHHHHHHHhCCCeEEEEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc-------CCCEEEE
Confidence 56778888899888776555322 233444555557899999998875334556655443 5666555
No 218
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.49 E-value=2e+02 Score=28.87 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~ 160 (484)
.+.++.+.+.+++.+... ++..++. |.+ |...|...|.+......++.|++++.+.- ..+.+..+..+
T Consensus 9 k~va~~i~~~lk~~v~~l~~~~~~~P~Laii~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~ 84 (285)
T PRK10792 9 KTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLV----GSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALID 84 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666777777665433 3323444 445 55567778999999999999999776643 35556666667
Q ss_pred Hhhc-CCCceEEEE
Q 011517 161 VLDL-SKYDGIVCV 173 (484)
Q Consensus 161 ~~~~-~~~d~IV~v 173 (484)
+++. ...|+|++-
T Consensus 85 ~lN~d~~V~GIlvq 98 (285)
T PRK10792 85 ELNADPTIDGILVQ 98 (285)
T ss_pred HHhCCCCCCEEEEe
Confidence 7754 346787763
No 219
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=46.48 E-value=1.9e+02 Score=27.44 Aligned_cols=67 Identities=16% Similarity=0.181 Sum_probs=43.1
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
.+-++..+++.|+.+.++.+.+... ..++.+.+...++|+||+++-|-.... +..+... .+|+-++-
T Consensus 18 ~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~~~~~~~~-~~~~~~~-------~ipvV~~~ 85 (268)
T cd06270 18 LSGVESVARKAGKHLIITAGHHSAEKEREAIEFLLERRCDALILHSKALSDDE-LIELAAQ-------VPPLVLIN 85 (268)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHHHcCCCEEEEecCCCCHHH-HHHHhhC-------CCCEEEEe
Confidence 3567788888999988877654322 234555665678999999987644322 4444332 56776664
No 220
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=46.47 E-value=23 Score=32.91 Aligned_cols=48 Identities=25% Similarity=0.415 Sum_probs=33.2
Q ss_pred hhHHHHHHHHhhcCCCceEEEEcC-CChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 152 QLHAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 152 ~~~a~~l~~~~~~~~~d~IV~vGG-DGtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
...|+++.+.+...++ .+|.-|| .|.+..+.+|..+.. ...+|++|..
T Consensus 18 ~~~A~~lG~~la~~g~-~lV~GGg~~GlM~a~a~ga~~~g------G~viGi~p~~ 66 (178)
T TIGR00730 18 KELAAELGAYLAGQGW-GLVYGGGRVGLMGAIADAAMENG------GTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHHCCC-EEEECCChHhHHHHHHHHHHhcC------CeEEEecchh
Confidence 3567777787765443 3444455 798899988887653 4689999865
No 221
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.29 E-value=1.2e+02 Score=28.76 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.++..+++.|+++.+..+.+ .....+..+++...+.|+||+.+-|.. ..+.++.+.+. ++|+-.+
T Consensus 18 ~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 86 (267)
T cd06322 18 ANAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA-------GIPVITV 86 (267)
T ss_pred HHHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC-------CCCEEEE
Confidence 3577888888898887766643 333445666666678999999887654 34556665443 5676665
No 222
>PRK05568 flavodoxin; Provisional
Probab=46.25 E-value=58 Score=28.29 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=35.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
++++|++- |+.|..+++- +.+...+...|++++++....... . ++.++|.|+.+.
T Consensus 2 ~~~~IvY~--S~~GnT~~~a-~~i~~~~~~~g~~v~~~~~~~~~~-~------~~~~~d~iilgs 56 (142)
T PRK05568 2 KKINIIYW--SGTGNTEAMA-NLIAEGAKENGAEVKLLNVSEASV-D------DVKGADVVALGS 56 (142)
T ss_pred CeEEEEEE--CCCchHHHHH-HHHHHHHHHCCCeEEEEECCCCCH-H------HHHhCCEEEEEC
Confidence 46788884 4555565544 577778888899888776554321 1 235788888765
No 223
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=46.06 E-value=1.3e+02 Score=22.79 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=35.4
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
|+.|+.-|... +-++++.+|++.|++++.+.......+.+-..++.-...--+|.++|.
T Consensus 2 ~v~ly~~~~C~-------~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~ 60 (73)
T cd03027 2 RVTIYSRLGCE-------DCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEK 60 (73)
T ss_pred EEEEEecCCCh-------hHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCE
Confidence 56666666543 345788889999999988777655544444444322222245555554
No 224
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=46.04 E-value=1.8e+02 Score=30.05 Aligned_cols=98 Identities=11% Similarity=0.110 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (484)
.+.++...+.+++.+... ++..++.+|. .|...+...|.+......++.|++++.+.- ..+.+..+..++
T Consensus 62 k~vA~~i~~~lk~~v~~l~~~~g~~P~LaiIl---vGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~ 138 (345)
T PLN02897 62 NVIAEEIRTKIASEVRKMKKAVGKVPGLAVVL---VGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRK 138 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCeEEEEE---eCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 446677777777766543 3334454433 355667778999899999999999877643 234455666666
Q ss_pred hhc-CCCceEEEE---cCCChHHHHHHHHhcC
Q 011517 162 LDL-SKYDGIVCV---SGDGILVEVVNGLLER 189 (484)
Q Consensus 162 ~~~-~~~d~IV~v---GGDGtl~evingL~~~ 189 (484)
++. ...|+|++- -..-.-.++++.+--.
T Consensus 139 lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~ 170 (345)
T PLN02897 139 FNEDTSIHGILVQLPLPQHLDESKILNMVRLE 170 (345)
T ss_pred HhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc
Confidence 653 356788763 2333344455554433
No 225
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.92 E-value=2e+02 Score=29.02 Aligned_cols=79 Identities=18% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (484)
+.|+.+.+.+++.+... + +|+=..|.++ ...+...|.+......++.|++++.+.-. .+.+..+..++
T Consensus 8 ~iA~~i~~~i~~~v~~l~~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~ 83 (295)
T PRK14174 8 KVSLDLKNELKTRVEAYRAKTGKVPGLTVIIVG----EDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIED 83 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCeEEEEEeC----CChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666666676665433 2 3443345554 44567789989999999999999876443 34455566666
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. ...|+|++
T Consensus 84 lN~D~~V~GIlv 95 (295)
T PRK14174 84 LNNDPDVHGILV 95 (295)
T ss_pred HhCCCCCCEEEE
Confidence 653 34677776
No 226
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=45.92 E-value=96 Score=27.68 Aligned_cols=58 Identities=21% Similarity=0.223 Sum_probs=37.1
Q ss_pred HhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhc-CCCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~-~~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..++.+|++.|+++... .....+...+.++++.. .++|.||+.||=|. ..+++..+..
T Consensus 23 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~D~t~~al~~~~~ 88 (152)
T cd00886 23 PALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPRDVTPEATRPLLD 88 (152)
T ss_pred HHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcCcHHHHHHHhC
Confidence 46888999999875443 34555555555554432 27999999999664 4555555543
No 227
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=45.90 E-value=42 Score=31.18 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=35.2
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
|-..+...|...|.+++++.... ..+.+ +...++|+||+.||.|..++.
T Consensus 11 f~~nl~~~l~~~~~~~~v~~~~~-~~~~~----~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 11 FTYNLYQYFCELGTEVMVKRNDE-LQLTD----IEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred hHHHHHHHHHHCCCcEEEEeCCC-CCHHH----HHhcCCCeEEEcCCCCChHhC
Confidence 54568888899999998877543 22333 222478999999999998764
No 228
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=45.16 E-value=1.6e+02 Score=27.74 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=40.7
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHh-hcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~-~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..+.......+.+.++ ...++|+||+.+.+... ..+..+... ++|+-.+
T Consensus 23 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 88 (268)
T cd06271 23 SGLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRTRPDD-PRVALLLER-------GFPFVTH 88 (268)
T ss_pred HHHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecCCCCC-hHHHHHHhc-------CCCEEEE
Confidence 57778888899988887776543333344443 34579999998876432 334444332 5676665
No 229
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=45.08 E-value=28 Score=31.65 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=34.3
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
..|+++.+.+...++ .||.-|+.|....+.++.++.. ...+|++|.+-
T Consensus 18 ~~A~~lg~~La~~g~-~lv~Gg~~GlM~a~a~ga~~~g------g~viGVlp~~l 65 (159)
T TIGR00725 18 EIAYRLGKELAKKGH-ILINGGRTGVMEAVSKGAREAG------GLVVGILPDED 65 (159)
T ss_pred HHHHHHHHHHHHCCC-EEEcCCchhHHHHHHHHHHHCC------CeEEEECChhh
Confidence 456778888876666 5666566788888887877653 56899999753
No 230
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=45.08 E-value=1.9e+02 Score=29.32 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=47.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEc
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
++.+-+.++++..+..--+ . +..-++..+++.|+.+.+..+.+ +..-.+..+.+...++|+||+.|
T Consensus 56 ~~s~~Ig~i~p~~~~~~~~-~-i~~gi~~~~~~~gy~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 56 GRTKTIGLVVPDITNPFFA-E-ILKGIEEAAREAGYSLLLANTDDDPEKEREYLETLLQKRVDGLILLG 122 (333)
T ss_pred CCCCEEEEEeCCCCCchHH-H-HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 3556677877644442222 2 34678899999999999988887 44555666677777899999999
No 231
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=45.07 E-value=1.4e+02 Score=29.51 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
..|.+|+.|| +|+.|++. ..+|.-++|.
T Consensus 241 ~aDl~Is~~G-~T~~E~~a-----------~g~P~i~i~~ 268 (279)
T TIGR03590 241 EADLAIGAAG-STSWERCC-----------LGLPSLAICL 268 (279)
T ss_pred HCCEEEECCc-hHHHHHHH-----------cCCCEEEEEe
Confidence 5688999999 99999873 2567777776
No 232
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=44.97 E-value=1.7e+02 Score=29.46 Aligned_cols=86 Identities=12% Similarity=-0.011 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL 186 (484)
..++.+++ |.-..---.. ..+-++..+++.|+++.+..+.+ .....+..+.+...++|+||+.+.+.. +.+.++-+
T Consensus 25 ~~~Ig~i~-~~~~~~f~~~-~~~gi~~~a~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~ 102 (330)
T PRK10355 25 EVKIGMAI-DDLRLERWQK-DRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEA 102 (330)
T ss_pred CceEEEEe-cCCCchHHHH-HHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 34555555 4333222222 23466777888899888876643 223445566666678999999987754 45666666
Q ss_pred hcCcCcccccCCcEEEe
Q 011517 187 LEREDWNDAIKVPLGVV 203 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiI 203 (484)
... ++|+-++
T Consensus 103 ~~~-------~iPvV~i 112 (330)
T PRK10355 103 KQE-------GIKVLAY 112 (330)
T ss_pred HHC-------CCeEEEE
Confidence 544 5777766
No 233
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=44.85 E-value=2.8e+02 Score=27.71 Aligned_cols=79 Identities=15% Similarity=0.101 Sum_probs=49.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
...+++.++..... -++. +.+.++..++..|+++.-.. .....+...++.++...+.|.|++.+..+-...++.
T Consensus 142 ~~~~~va~l~~~~~-~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~ 217 (344)
T cd06345 142 HGFKTAAIVAEDAA-WGKG---IDAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQIKAADPDVIIAGFSGNVGVLFTQ 217 (344)
T ss_pred CCCceEEEEecCch-hhhH---HHHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHHHhcCCCEEEEeecCchHHHHHH
Confidence 34577877765433 2322 33577888888888754322 222345566777777778998888776655666776
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.+...
T Consensus 218 ~~~~~ 222 (344)
T cd06345 218 QWAEQ 222 (344)
T ss_pred HHHHc
Confidence 66654
No 234
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.62 E-value=2e+02 Score=29.02 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (484)
+.|+...+.+++.+... + +|+=..|++++ ..+...|.+......++.|++++.+. +..+.+..+..++
T Consensus 10 ~iA~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~ 85 (297)
T PRK14168 10 EIREEILEEIRGEVAELKEKYGKVPGLVTILVGE----SPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDK 85 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEeCC----CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45566666666655432 2 45444455544 45677898888999999999988763 3455556666677
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. ...|+|++
T Consensus 86 lN~D~~V~GIiv 97 (297)
T PRK14168 86 YNNDDSIHGILV 97 (297)
T ss_pred HhCCCCCCEEEE
Confidence 653 34677776
No 235
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.59 E-value=2.2e+02 Score=28.57 Aligned_cols=80 Identities=14% Similarity=0.132 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~ 162 (484)
+.|+.+.+.+++.+... + +|+=..|.+++ ..+...|.+......++.|++++.+.-. .+.+..+..+++
T Consensus 8 ~iA~~i~~~ik~~v~~l~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~l 83 (282)
T PRK14182 8 QIAAKVKGEVATEVRALAARGVQTGLTVVRVGD----DPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARL 83 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeCC----CHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666667776665443 2 45444455544 4567789888899999999998876532 344555666666
Q ss_pred hc-CCCceEEEE
Q 011517 163 DL-SKYDGIVCV 173 (484)
Q Consensus 163 ~~-~~~d~IV~v 173 (484)
+. ...|+|++-
T Consensus 84 N~d~~V~GIivq 95 (282)
T PRK14182 84 NADPAVHGILVQ 95 (282)
T ss_pred hCCCCCCEEEEe
Confidence 53 356787763
No 236
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.52 E-value=2.3e+02 Score=28.51 Aligned_cols=79 Identities=25% Similarity=0.366 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (484)
+.|+...+.+++.+... ++..++. |++ |...|...|.+......++.|++++.+.- ..+.+..+..++
T Consensus 8 ~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 83 (286)
T PRK14184 8 ATAATIREELKTEVAALTARHGRAPGLAVILV----GEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAE 83 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCEEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34455555555554322 3333454 444 44556778988889999999999887653 334556666777
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. ...|+|++
T Consensus 84 lN~d~~V~GIlv 95 (286)
T PRK14184 84 LNARPDIDGILL 95 (286)
T ss_pred HhCCCcCceEEE
Confidence 753 35677776
No 237
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=44.10 E-value=1.6e+02 Score=28.96 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=41.9
Q ss_pred HhHHHHHHhcCCeEEEE-ecC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~-~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.++ .+. ......+..+.+...++|+||+.+.+-. +.+.+..+... .+|+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~v 87 (298)
T cd06302 19 EGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREA-------GIKVVTH 87 (298)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHC-------CCeEEEE
Confidence 57778888888888765 333 2333345555655568999999987744 34555555432 5676555
No 238
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=43.75 E-value=2.2e+02 Score=28.38 Aligned_cols=86 Identities=12% Similarity=0.154 Sum_probs=50.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
+.+.++ .|.....--..++ +-++..+++.|+++.+..+.+. ..-.+..+.+...+.|+||+.+++-.- +.+..|..
T Consensus 60 ~~i~vi-~~~~~~~~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-~~~~~l~~ 136 (341)
T PRK10703 60 KSIGLL-ATSSEAPYFAEII-EAVEKNCYQKGYTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYPE-PLLAMLEE 136 (341)
T ss_pred CeEEEE-eCCCCCchHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHHh
Confidence 344455 4654433222233 5677788888988777765532 222345556656789999999876432 45555543
Q ss_pred CcCcccccCCcEEEec
Q 011517 189 REDWNDAIKVPLGVVP 204 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP 204 (484)
. .++|+-.+=
T Consensus 137 ~------~~iPvV~~d 146 (341)
T PRK10703 137 Y------RHIPMVVMD 146 (341)
T ss_pred c------CCCCEEEEe
Confidence 0 156776663
No 239
>PRK09271 flavodoxin; Provisional
Probab=43.69 E-value=60 Score=29.23 Aligned_cols=70 Identities=19% Similarity=0.218 Sum_probs=43.1
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
+++|++=...| .+.++ .+.++..|...|+++++...... +..++ ..+..++|.|++.. |+|.+.+-+..+
T Consensus 2 kv~IvY~S~tG--nTe~~-A~~ia~~l~~~g~~v~~~~~~~~-~~~~~--~~~~~~~d~vilgt~T~~~G~~p~~~~~f 74 (160)
T PRK09271 2 RILLAYASLSG--NTREV-AREIEERCEEAGHEVDWVETDVQ-TLAEY--PLDPEDYDLYLLGTWTDNAGRTPPEMKRF 74 (160)
T ss_pred eEEEEEEcCCc--hHHHH-HHHHHHHHHhCCCeeEEEecccc-ccccc--ccCcccCCEEEEECcccCCCcCCHHHHHH
Confidence 67788855555 45543 46888889999988876654332 11111 22345789888887 678765433333
No 240
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=43.52 E-value=57 Score=30.27 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=37.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
+|++||=|=-| |-..+...|++.|.+++++..... +. .+ ++.+|+||+.||-|.
T Consensus 2 ~~iliid~~ds--------f~~~i~~~l~~~g~~~~v~~~~~~-~~----~~--l~~~d~iIi~gGp~~ 55 (190)
T PRK06895 2 TKLLIINNHDS--------FTFNLVDLIRKLGVPMQVVNVEDL-DL----DE--VENFSHILISPGPDV 55 (190)
T ss_pred cEEEEEeCCCc--------hHHHHHHHHHHcCCcEEEEECCcc-Ch----hH--hccCCEEEECCCCCC
Confidence 57777766432 334588899999999888764321 11 22 246899999999994
No 241
>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=43.49 E-value=3.3e+02 Score=26.69 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=46.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|..+.. -+ .. ..+.++..+++.|+++... ......+....+.++...+.|+|++.+.+.....+++.
T Consensus 132 g~~~vail~~~~~-~~--~~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~pdaIi~~~~~~~~~~~~~~ 207 (312)
T cd06333 132 GVKTVAFIGFSDA-YG--ES-GLKELKALAPKYGIEVVADERYGRTDTSVTAQLLKIRAARPDAVLIWGSGTPAALPAKN 207 (312)
T ss_pred CCCEEEEEecCcH-HH--HH-HHHHHHHHHHHcCCEEEEEEeeCCCCcCHHHHHHHHHhCCCCEEEEecCCcHHHHHHHH
Confidence 3578888765432 22 22 3357788889999876432 11112234444444434568999988766656678888
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 208 l~~~ 211 (312)
T cd06333 208 LRER 211 (312)
T ss_pred HHHc
Confidence 7654
No 242
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=43.24 E-value=41 Score=30.98 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC--CChHHHHHHHHhc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG--DGILVEVVNGLLE 188 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG--DGtl~evingL~~ 188 (484)
+++|++-...|. .++ +.+.++..|.. |++++++...... ..++.+||.||+.++ -|.+...+..++.
T Consensus 2 kilIvY~S~~G~--T~~-iA~~Ia~~l~~-g~~v~~~~~~~~~-------~~~l~~yD~vIlGspi~~G~~~~~~~~fl~ 70 (177)
T PRK11104 2 KTLILYSSRDGQ--TRK-IASYIASELKE-GIQCDVVNLHRIE-------EPDLSDYDRVVIGASIRYGHFHSALYKFVK 70 (177)
T ss_pred cEEEEEECCCCh--HHH-HHHHHHHHhCC-CCeEEEEEhhhcC-------ccCHHHCCEEEEECccccCCcCHHHHHHHH
Confidence 578888665554 444 34678888887 8888776544311 123467999888776 4666666666654
Q ss_pred CcCcccccCCcEEEecCC
Q 011517 189 REDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~G 206 (484)
+.. ..-...+++++-+|
T Consensus 71 ~~~-~~l~~K~v~~F~v~ 87 (177)
T PRK11104 71 KHA-TQLNQMPSAFFSVN 87 (177)
T ss_pred HHH-HHhCCCeEEEEEec
Confidence 421 11234688888777
No 243
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=43.18 E-value=1.6e+02 Score=27.82 Aligned_cols=67 Identities=21% Similarity=0.213 Sum_probs=43.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.+.++..+++.|+++.+..+.+ +....+..+++...++|+||+++.+.. ..++..+... ++|+-.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~~-------~ipvv~~ 84 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFSIEKEIEALELLARQKVDGIILLATTIT-DEHREAIKKL-------NVPVVVV 84 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhcC-------CCCEEEE
Confidence 33577778888899887776653 322345566776678999999987754 2455555432 4566555
No 244
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=43.18 E-value=2.2e+02 Score=29.54 Aligned_cols=80 Identities=13% Similarity=0.199 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~ 160 (484)
.+.++...+.+++.+... + .|+=..|++ |...+...|.+......++.|++++.+. +..+.+..+..+
T Consensus 79 k~iA~~i~~~lk~~v~~lk~~~g~~P~LaiIlv----G~dpaS~~Yv~~k~K~~e~~GI~~~~~~lpe~~te~ell~~I~ 154 (364)
T PLN02616 79 KAVAKKIRDEITIEVSRMKESIGVVPGLAVILV----GDRKDSATYVRNKKKACDSVGINSFEVRLPEDSTEQEVLKFIS 154 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEe----CCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 456677777777654432 3 344334555 4445677899888999999999977664 333344555666
Q ss_pred Hhhc-CCCceEEE
Q 011517 161 VLDL-SKYDGIVC 172 (484)
Q Consensus 161 ~~~~-~~~d~IV~ 172 (484)
+++. ...|+|++
T Consensus 155 ~LN~D~~V~GIlV 167 (364)
T PLN02616 155 GFNNDPSVHGILV 167 (364)
T ss_pred HHcCCCCCCEEEE
Confidence 6654 34678776
No 245
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=42.98 E-value=1.4e+02 Score=25.94 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=50.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
-+.+-++-||.++..++.. -.+..+|...|+++-+ +...+ -|....++. ..+.+...| +|+-|+++.+.
T Consensus 36 i~~vev~~np~~~~~~g~G---~~~a~~l~~~gvdvvi--~~~iG~~a~~~l~~~---GIkv~~~~~--~~V~e~i~~~~ 105 (121)
T COG1433 36 IKNVEVIENPAASAEKGAG---IRIAELLVDEGVDVVI--ASNIGPNAYNALKAA---GIKVYVAPG--GTVEEAIKAFL 105 (121)
T ss_pred EEEEEEeecccccccCcch---HHHHHHHHHcCCCEEE--ECccCHHHHHHHHHc---CcEEEecCC--CCHHHHHHHHh
Confidence 3568899999777666543 2577789888876644 33333 455555553 567777777 99999999987
Q ss_pred cCc
Q 011517 188 ERE 190 (484)
Q Consensus 188 ~~~ 190 (484)
.-.
T Consensus 106 ~g~ 108 (121)
T COG1433 106 EGE 108 (121)
T ss_pred cCC
Confidence 763
No 246
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=42.80 E-value=1.1e+02 Score=29.38 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=43.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..+.+.. .-.+..+.+...++|+||+.+.+.. +.+.++.+.+. .+|+-.+
T Consensus 19 ~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~-------~iPvV~~ 86 (273)
T cd06309 19 KSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA-------GIPVILV 86 (273)
T ss_pred HHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC-------CCCEEEE
Confidence 57788888889888776554322 2234556666678999999887754 34666666543 5666554
No 247
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=42.77 E-value=92 Score=30.50 Aligned_cols=47 Identities=15% Similarity=0.300 Sum_probs=31.6
Q ss_pred hHHhHHHHHHhcCCe-EEEEecCChhHH--HHHHHHhhcCCCceEEEEcCCC
Q 011517 129 FLDDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~-~~v~~T~~~~~a--~~l~~~~~~~~~d~IV~vGGDG 177 (484)
+.+.....|+..|++ ++++.......| .++.+.+ .+.|+|++.|||=
T Consensus 44 ~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l--~~ad~I~~~GGnq 93 (250)
T TIGR02069 44 VGERYITIFSRLGVKEVKILDVREREDASDENAIALL--SNATGIFFTGGDQ 93 (250)
T ss_pred HHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHH--hhCCEEEEeCCCH
Confidence 345778889999984 666665544433 2344444 4789999999994
No 248
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.60 E-value=1.6e+02 Score=28.70 Aligned_cols=66 Identities=12% Similarity=0.108 Sum_probs=41.2
Q ss_pred HhHHHHHHhcCCeEEEE-ecC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQ-ETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~-~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
.-++..+++.|+++.++ .++ ......+..+.+...+.|+||+.+.|-. ..+.++.+..+ .+|+-++
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~-------~iPvV~~ 87 (294)
T cd06316 19 RGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEA-------GIKLVFM 87 (294)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHc-------CCcEEEe
Confidence 45677788888887644 332 2222234455555568999999887754 35677776654 5666554
No 249
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=42.31 E-value=1.5e+02 Score=28.38 Aligned_cols=50 Identities=18% Similarity=0.134 Sum_probs=33.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+|++|+..|-+-. ...+...|+.+|+++.++..... .++++|+||+.||-
T Consensus 1 ~~v~Vl~~~G~n~-------~~~~~~al~~~G~~~~~i~~~~~----------~l~~~d~lilpGG~ 50 (227)
T TIGR01737 1 MKVAVIRFPGTNC-------DRDTVYALRLLGVDAEIVWYEDG----------SLPDYDGVVLPGGF 50 (227)
T ss_pred CeEEEEeCCCcCc-------HHHHHHHHHHCCCeEEEEecCCC----------CCCCCCEEEECCCC
Confidence 3688998885431 12455678889988877643321 13579999999985
No 250
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=42.21 E-value=67 Score=28.08 Aligned_cols=85 Identities=11% Similarity=0.198 Sum_probs=46.3
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEE-EecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV-QETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v-~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
+++|++=...| .++++ .+.++..|...|+++++ +.... .... ..+..+||.|++.. |+|.+.+-+..+
T Consensus 2 ~i~IiY~S~tG--nTe~i-A~~ia~~l~~~g~~v~~~~~~~~---~~~~--~~~~~~~d~iilgs~t~~~g~~p~~~~~f 73 (140)
T TIGR01754 2 RILLAYLSLSG--NTEEV-AFMIQDYLQKDGHEVDILHRIGT---LADA--PLDPENYDLVFLGTWTWERGRTPDEMKDF 73 (140)
T ss_pred eEEEEEECCCC--hHHHH-HHHHHHHHhhCCeeEEecccccc---cccC--cCChhhCCEEEEEcCeeCCCcCCHHHHHH
Confidence 67788855444 55554 46888888888887652 21110 0000 12344689888877 688766444444
Q ss_pred hcCcCcccccCCcEEEecCC
Q 011517 187 LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~G 206 (484)
+..-.. ....++++=.|
T Consensus 74 l~~l~~---~~k~~avfgtg 90 (140)
T TIGR01754 74 IAELGY---KPSNVAIFGTG 90 (140)
T ss_pred HHHhcc---cCCEEEEEEcC
Confidence 433111 13455555544
No 251
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=41.83 E-value=78 Score=30.73 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=50.1
Q ss_pred HhHHHHHHhcCC-eEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCch
Q 011517 131 DDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGN 209 (484)
Q Consensus 131 ~~v~p~l~~ag~-~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN 209 (484)
+++...++..+. .++.+-......+.++++.+...+.|+|++-|-||.-.|-+..++++= .+...+|+-+.|....+
T Consensus 5 ~~l~~~~~~~~~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~i--k~~~~lPvilfP~~~~~ 82 (240)
T COG1646 5 KYLLEKLDWRGKRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAI--KERTDLPVILFPGSPSG 82 (240)
T ss_pred HHHHHHhhhccceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHH--HhhcCCCEEEecCChhc
Confidence 345555554443 233333333356677888888789999999999998776666655531 11247999999987655
Q ss_pred h
Q 011517 210 G 210 (484)
Q Consensus 210 ~ 210 (484)
-
T Consensus 83 i 83 (240)
T COG1646 83 I 83 (240)
T ss_pred c
Confidence 3
No 252
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=41.82 E-value=3.1e+02 Score=27.54 Aligned_cols=77 Identities=13% Similarity=0.088 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
-+|+.+++....- +++ +.+.++..|++.|+++..... -...+....++++...+.|.|++.+.......++..+
T Consensus 138 ~~~v~ii~~~~~~-g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~~ 213 (347)
T cd06335 138 FKKVALLLDNTGW-GRS---NRKDLTAALAARGLKPVAVEWFNWGDKDMTAQLLRAKAAGADAIIIVGNGPEGAQIANGM 213 (347)
T ss_pred CCeEEEEeccCch-hhh---HHHHHHHHHHHcCCeeEEEeeecCCCccHHHHHHHHHhCCCCEEEEEecChHHHHHHHHH
Confidence 4788888876542 222 335778889999987643222 1233555666777667899999998887888888877
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 214 ~~~ 216 (347)
T cd06335 214 AKL 216 (347)
T ss_pred HHc
Confidence 664
No 253
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=41.78 E-value=1.7e+02 Score=33.26 Aligned_cols=60 Identities=10% Similarity=-0.065 Sum_probs=43.1
Q ss_pred chHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 128 IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 128 ~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+-.+-+..+|+.+|+++. .........++++.+...+.|.|+++|=|++--|.+..+++.
T Consensus 597 ~ra~fv~~~l~~~GfeV~--~~~~~~s~e~~v~aa~~~~a~ivvlcs~d~~~~e~~~~l~~~ 656 (714)
T PRK09426 597 RGAKVIATAFADLGFDVD--IGPLFQTPEEAARQAVENDVHVVGVSSLAAGHKTLVPALIEA 656 (714)
T ss_pred HhHHHHHHHHHhCCeeEe--cCCCCCCHHHHHHHHHHcCCCEEEEeccchhhHHHHHHHHHH
Confidence 334678999999998873 332223344666666667899999999999988777666654
No 254
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.78 E-value=2.1e+02 Score=28.59 Aligned_cols=80 Identities=20% Similarity=0.160 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhc-C
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDL-S 165 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~-~ 165 (484)
+.|+.-.+.+++.+...+...++.+|. .|...|...|.+......++.|++++.+.- ..+.+..+..++++. .
T Consensus 7 ~~a~~i~~~~~~~v~~lg~~P~Laii~---vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~ 83 (279)
T PRK14178 7 AVSEKRLELLKEEIIESGLYPRLATVI---VGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDP 83 (279)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEE---eCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 345555566666665545444554443 344567778988889999999999877543 233455566666643 3
Q ss_pred CCceEEE
Q 011517 166 KYDGIVC 172 (484)
Q Consensus 166 ~~d~IV~ 172 (484)
..|+|++
T Consensus 84 ~V~GIlv 90 (279)
T PRK14178 84 DINGILV 90 (279)
T ss_pred CCCeEEE
Confidence 5677776
No 255
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=41.61 E-value=1e+02 Score=32.56 Aligned_cols=80 Identities=14% Similarity=0.127 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVK 160 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~ 160 (484)
....|.+.|.+.++... .+++.|++.+..|.+. ..+.++|+..|+++..+-.+.. .+..++.+
T Consensus 150 ~~~~Y~~~l~~~~~~~~-~~~lkVvvD~~nG~~~------~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~ 222 (434)
T cd05802 150 ARGRYIEFLKSTFPKDL-LSGLKIVLDCANGAAY------KVAPEVFRELGAEVIVINNAPDGLNINVNCGSTHPESLQK 222 (434)
T ss_pred hHHHHHHHHHHhcCccc-cCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCccCHHHHHH
Confidence 34567777777765322 3578999999888653 3466778888888765533211 23334444
Q ss_pred HhhcCCCceEEEEcCCC
Q 011517 161 VLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (484)
.....++|.-++.-|||
T Consensus 223 ~v~~~~adlGia~DgDg 239 (434)
T cd05802 223 AVLENGADLGIAFDGDA 239 (434)
T ss_pred HHHhcCCCEEEEEcCCC
Confidence 34335667777777776
No 256
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=41.24 E-value=3.3e+02 Score=27.20 Aligned_cols=103 Identities=15% Similarity=0.122 Sum_probs=57.4
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHh--cCCeEEEEe--cCCh-hHH
Q 011517 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED--ANIQFTVQE--TTQQ-LHA 155 (484)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~--ag~~~~v~~--T~~~-~~a 155 (484)
.++|+..... ..+...+-+++......|++.++. +...-++. ..+.+...|++ .|+++.... .... .+.
T Consensus 117 ~~~fr~~~~~--~~~~~~l~~~~~~~~~~k~v~i~~-~~~~~g~~---~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~ 190 (342)
T cd06329 117 FWHFRTDANT--DMKMEALASYIKKQPDGKKVYLIN-QDYSWGQD---VAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDF 190 (342)
T ss_pred ceEEEecCCh--HHHHHHHHHHHHhcccCceEEEEe-CChHHHHH---HHHHHHHHHHhhcCCcEEeceeccCCCCCCch
Confidence 4566543211 122333334443333356777665 33333332 23578889998 887764322 1122 445
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
..++.++...+.|.|++++..+..-.++..+...
T Consensus 191 ~~~i~~l~~~~~d~v~~~~~~~~~~~~~~~~~~~ 224 (342)
T cd06329 191 SPYVAKIKASGADTVITGNWGNDLLLLVKQAADA 224 (342)
T ss_pred HHHHHHHHHcCCCEEEEcccCchHHHHHHHHHHc
Confidence 5566676667899998877555566777777654
No 257
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.21 E-value=2e+02 Score=27.72 Aligned_cols=63 Identities=21% Similarity=0.265 Sum_probs=43.2
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.++..+++.|+++.++.+.+ + .+..+.+...+.|+|++.+-+.+- +.++-+... ++|+-.+
T Consensus 23 ~~gi~~~a~~~g~~~~~~~~~~--~-~~~~~~~~~~~~dgiii~~~~~~~-~~~~~~~~~-------~ipvV~~ 85 (283)
T cd06279 23 LAGVAEVLDAAGVNLLLLPASS--E-DSDSALVVSALVDGFIVYGVPRDD-PLVAALLRR-------GLPVVVV 85 (283)
T ss_pred HHHHHHHHHHCCCEEEEecCcc--H-HHHHHHHHhcCCCEEEEeCCCCCh-HHHHHHHHc-------CCCEEEE
Confidence 3577888888999888877765 2 234455555789999999877653 456655433 5677666
No 258
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=41.07 E-value=1.7e+02 Score=31.99 Aligned_cols=84 Identities=20% Similarity=0.185 Sum_probs=51.7
Q ss_pred ceEEeeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE-EEecCChhH
Q 011517 76 SVVRKDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETTQQLH 154 (484)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~-v~~T~~~~~ 154 (484)
..+-.+.++++...+. ..+|.+.+.+.. .+++.||+|-.-| .+.++..|+.+|+++. .+-.+.+.+
T Consensus 489 ~~rveQ~v~m~~ed~k----~kkL~eil~~~~-~ppiIIFvN~kk~--------~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 489 TPRVEQKVEMVSEDEK----RKKLIEILESNF-DPPIIIFVNTKKG--------ADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred ccchheEEEEecchHH----HHHHHHHHHhCC-CCCEEEEEechhh--------HHHHHHHHhhccceEEEeeCCccHHH
Confidence 3344555555544332 456667776653 3469999997633 2578899999998754 444555544
Q ss_pred HHHHHHHhhcCCCceEEE
Q 011517 155 AKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 155 a~~l~~~~~~~~~d~IV~ 172 (484)
-....+.+..+..|.+||
T Consensus 556 Re~aL~~fr~~t~dIlVa 573 (673)
T KOG0333|consen 556 RENALADFREGTGDILVA 573 (673)
T ss_pred HHHHHHHHHhcCCCEEEE
Confidence 444455555556777776
No 259
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=41.05 E-value=1.1e+02 Score=29.54 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=43.3
Q ss_pred CCCcEEEEEEcCCC-----CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh---cCCCc-eEEEEcCCC
Q 011517 107 GRPKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYD-GIVCVSGDG 177 (484)
Q Consensus 107 ~~~~r~lviiNP~s-----G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~---~~~~d-~IV~vGGDG 177 (484)
.+++++.+|||-.. ....+...=.+.++.+|+..|+++.+..=-...+..+.++++. ...+| .+++.-|-|
T Consensus 6 ~~~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~~~sHG 85 (243)
T cd00032 6 SKRRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVEVKNNLTAEEILEELKEFASPDHSDSDSFVCVILSHG 85 (243)
T ss_pred CCCCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHHHHHhccCCCCCeeEEEECCCC
Confidence 34666666666531 1222222234689999999999887766556556666665554 24566 455666666
Q ss_pred h
Q 011517 178 I 178 (484)
Q Consensus 178 t 178 (484)
.
T Consensus 86 ~ 86 (243)
T cd00032 86 E 86 (243)
T ss_pred C
Confidence 4
No 260
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=41.00 E-value=1.2e+02 Score=26.42 Aligned_cols=40 Identities=18% Similarity=0.230 Sum_probs=25.4
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~ 151 (484)
|+++|.=...-.+...+ ..+.+...++..|++++++....
T Consensus 2 kilii~gS~r~~~~t~~-l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRK-LAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp EEEEEESSSSTTSHHHH-HHHHHHHHHHHTTEEEEEEECTT
T ss_pred EEEEEECcCCCCCHHHH-HHHHHHHHHHHcCCEEEEEeccc
Confidence 45555433223344444 44789999999899998876554
No 261
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=40.97 E-value=1.1e+02 Score=27.92 Aligned_cols=43 Identities=21% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 133 v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
+...|+++|..+.++..... .. +++..++|+||+.||-|...+
T Consensus 12 ~~~~l~~~G~~~~~~~~~~~--~~----~~~~~~~dgiil~GG~~~~~~ 54 (178)
T cd01744 12 ILRELLKRGCEVTVVPYNTD--AE----EILKLDPDGIFLSNGPGDPAL 54 (178)
T ss_pred HHHHHHHCCCeEEEEECCCC--HH----HHhhcCCCEEEECCCCCChhH
Confidence 56678888988877654432 11 233357999999999876544
No 262
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=40.81 E-value=2.3e+02 Score=26.72 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=43.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
+.+.++..+++.|+.+.+..+.+ .....+..+.+...++|+|++.+.|..- +.++-+... .+|+-.+=
T Consensus 17 ~~~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~-------~ipvV~~~ 85 (267)
T cd06283 17 VLKGIEDVCRAHGYQVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKN-------GKPVVLVD 85 (267)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcC-------CCCEEEEc
Confidence 33577788888888887766654 2223345566666789999999987653 334544332 56776663
No 263
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=40.73 E-value=2.5e+02 Score=25.83 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcC----
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---- 165 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~---- 165 (484)
++...|.+.+++.. ..++++|+=|-. |..+ .. -.++++.+-+.-|+++-.+.+..++-..++.+-+...
T Consensus 62 ~~~~~~~~~l~~~~----~~~~v~IvSNsa-Gs~~-d~-~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 62 PEYAEWLNELKKQF----GKDRVLIVSNSA-GSSD-DP-DGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVT 134 (168)
T ss_pred HHHHHHHHHHHHHC----CCCeEEEEECCC-Cccc-Cc-cHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCC
Confidence 45677877766543 234788888876 3333 11 2246666666678887777777887766776655422
Q ss_pred CCceEEEEcCCChHHHHHHH
Q 011517 166 KYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~eving 185 (484)
+++-++++ ||=.+-+|+=|
T Consensus 135 ~p~eiavI-GDrl~TDVl~g 153 (168)
T PF09419_consen 135 SPSEIAVI-GDRLFTDVLMG 153 (168)
T ss_pred CchhEEEE-cchHHHHHHHh
Confidence 34444444 69988888765
No 264
>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.
Probab=40.61 E-value=2.4e+02 Score=27.79 Aligned_cols=78 Identities=14% Similarity=0.096 Sum_probs=49.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC--hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ--QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~--~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.+|..... -++. ..+.++..++..|+++.....-. ..+...+++++...+.|.|+..+.......++..
T Consensus 134 ~~~~v~~v~~~~~-~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~l~~i~~~~~~~vi~~~~~~~~~~~~~~ 209 (334)
T cd06342 134 KAKKVAIIDDKTA-YGQG---LADEFKKALKAAGGKVVAREGTTDGATDFSAILTKIKAANPDAVFFGGYYPEAGPLVRQ 209 (334)
T ss_pred CCCEEEEEeCCcc-hhhH---HHHHHHHHHHHcCCEEEEEecCCCCCccHHHHHHHHHhcCCCEEEEcCcchhHHHHHHH
Confidence 3578888875543 2322 23577888888898776543322 3455666777776788988877765556666766
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 210 ~~~~ 213 (334)
T cd06342 210 MRQL 213 (334)
T ss_pred HHHc
Confidence 6553
No 265
>cd03089 PMM_PGM The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other membe
Probab=40.57 E-value=1.4e+02 Score=31.62 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-------------ChhHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKE 157 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-------------~~~~a~~ 157 (484)
....+.+.|.+.++. . .+.+.|+++|..|.+. ..+..+|+..|+++..+... .+.+..+
T Consensus 145 ~~~~Y~~~l~~~i~~-~-~~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~i~~~~d~~F~~~~p~p~~~~~l~~ 216 (443)
T cd03089 145 ILPDYIDRLLSDIKL-G-KRPLKVVVDAGNGAAG------PIAPQLLEALGCEVIPLFCEPDGTFPNHHPDPTDPENLED 216 (443)
T ss_pred CHHHHHHHHHHhccc-c-cCCCeEEEECCCCchH------HHHHHHHHHCCCEEEEecCCCCCCCCCCCcCCCCHHHHHH
Confidence 345677777776642 2 2679999999998754 35677888888876444211 1223334
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011517 158 IVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (484)
+.+.+...+.|..++.=|||
T Consensus 217 l~~~v~~~~adlgia~D~Da 236 (443)
T cd03089 217 LIAAVKENGADLGIAFDGDG 236 (443)
T ss_pred HHHHHHHcCCCEEEEecCCc
Confidence 44444445677777777777
No 266
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=40.55 E-value=1.2e+02 Score=32.31 Aligned_cols=81 Identities=12% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~ 160 (484)
....+.+.|.+.++..-..+++-|+++|..|.+. ..+..+|++.|+++..+..+. +.+-.++.+
T Consensus 155 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~nGa~~------~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~~e~l~~ 228 (446)
T PRK14324 155 VIGRYIVHIKNSFPKDLTLKGLRIVLDTANGAAY------KVAPTVFSELGADVIVINDEPNGFNINENCGALHPENLAQ 228 (446)
T ss_pred HHHHHHHHHHHhcCCccCCCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEECCCCCCCCCCCCCCCCCHHHHHH
Confidence 3455777776666421123578999999888642 356678888898775542221 113334444
Q ss_pred HhhcCCCceEEEEcCCC
Q 011517 161 VLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (484)
.....++|.-++.-|||
T Consensus 229 ~v~~~~adlGia~DgDg 245 (446)
T PRK14324 229 EVKRYRADIGFAFDGDA 245 (446)
T ss_pred HHHhCCCCEEEEECCCC
Confidence 44334566666666665
No 267
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=40.49 E-value=1.8e+02 Score=28.75 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=43.5
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHH--HHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a--~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.++..+++.|+++.+..+.. +.+ .+..+.+...+.|+||+++-|.. +.+.+..+.+. .+|+-.+
T Consensus 17 ~~~i~~~a~~~g~~v~~~~~~~-~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~-------~iPvV~~ 85 (302)
T TIGR02634 17 RDIFVAAAESLGAKVFVQSANG-NEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDE-------GIKVVAY 85 (302)
T ss_pred HHHHHHHHHhcCCEEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHC-------CCeEEEe
Confidence 3467777888888776654432 222 24555665678999999998865 46677666543 5677665
No 268
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=40.43 E-value=40 Score=30.76 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.6
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
..+...|+++|.++.++....... +.+..++|+||+-||.+..+
T Consensus 12 ~~~~~~l~~~G~~~~~~~~~~~~~------~~~~~~~dgvIl~Gg~~~~~ 55 (181)
T cd01742 12 HLIARRVRELGVYSEILPNTTPLE------EIKLKNPKGIILSGGPSSVY 55 (181)
T ss_pred HHHHHHHHhcCceEEEecCCCChh------hhcccCCCEEEECCCccccc
Confidence 457788999998888776654311 22456899999999987654
No 269
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=40.40 E-value=81 Score=28.34 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=29.0
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL 153 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~ 153 (484)
..|.|+++|-||.- ..-.+.-.|...|.++-++.+..++
T Consensus 2 i~v~s~kgG~GKTt--~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 2 IAVMSGKGGVGKST--VAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred EEEecCCCcCChhH--HHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 57889999999875 3346788888888888777665544
No 270
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=40.33 E-value=1.8e+02 Score=27.88 Aligned_cols=66 Identities=6% Similarity=-0.054 Sum_probs=41.3
Q ss_pred HhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
.-++..++..|+++.+..+.. ...-.+..+.+...++|+||+.+.|.+-.+.+..+... .+|+-.+
T Consensus 19 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~-------giPvV~~ 87 (268)
T cd06306 19 YGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAA-------SIPVIAL 87 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHC-------CCCEEEe
Confidence 456677888888877765442 22233455666567899999998876543334444332 6777655
No 271
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.10 E-value=4.7e+02 Score=27.63 Aligned_cols=67 Identities=25% Similarity=0.401 Sum_probs=42.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhc--CCeEEEEecCChhH--HHHHHHHhh---cCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQLH--AKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a--g~~~~v~~T~~~~~--a~~l~~~~~---~~~~d~IV~vGGDGtl~e 181 (484)
|+|+.||-.|.| .|.+ .+...+... .+++.++.+.=+|. +.++++.+. ..++|+||++=|=|.+-+
T Consensus 135 p~~I~viTs~~g---Aa~~----D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eD 207 (438)
T PRK00286 135 PKRIGVITSPTG---AAIR----DILTVLRRRFPLVEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLED 207 (438)
T ss_pred CCEEEEEeCCcc---HHHH----HHHHHHHhcCCCCeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHH
Confidence 889999987753 3332 333333333 35677776665554 456665553 223799999999998775
Q ss_pred H
Q 011517 182 V 182 (484)
Q Consensus 182 v 182 (484)
.
T Consensus 208 L 208 (438)
T PRK00286 208 L 208 (438)
T ss_pred h
Confidence 4
No 272
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=40.08 E-value=36 Score=28.37 Aligned_cols=26 Identities=19% Similarity=0.595 Sum_probs=23.1
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
.+.|.|.+.++++...|+++|+..+.
T Consensus 76 ~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 76 ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999998874
No 273
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=39.73 E-value=1.5e+02 Score=28.73 Aligned_cols=59 Identities=14% Similarity=0.123 Sum_probs=38.5
Q ss_pred HhHHHHHHhcCCeEEEEecCC-----hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-----~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+.++..++..|+++.+..+.. ...-.++.+.+...+.|+||+++.+....+.+..+.+.
T Consensus 20 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~ 83 (280)
T cd06303 20 ASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLAS 83 (280)
T ss_pred HHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhC
Confidence 567777888888777754321 12223455566567899999988766555667666554
No 274
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=39.67 E-value=1.7e+02 Score=23.54 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=39.4
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
..|.|+++|-||.. ....+...|...|.++-++.+... ||.||+=.+=+.-....+
T Consensus 2 i~~~~~kgG~Gkst--~~~~la~~~~~~~~~vl~~d~d~~--------------~d~viiD~p~~~~~~~~~ 57 (104)
T cd02042 2 IAVANQKGGVGKTT--TAVNLAAALARRGKRVLLIDLDPQ--------------YDYIIIDTPPSLGLLTRN 57 (104)
T ss_pred EEEEeCCCCcCHHH--HHHHHHHHHHhCCCcEEEEeCCCC--------------CCEEEEeCcCCCCHHHHH
Confidence 57899999999875 345788888888888888877665 787776544443333333
No 275
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=39.59 E-value=42 Score=32.51 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=13.9
Q ss_pred cCCCceEEEEcCCChHH
Q 011517 164 LSKYDGIVCVSGDGILV 180 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl~ 180 (484)
.++||+|++.||=|...
T Consensus 94 ~~dYDav~iPGG~g~~~ 110 (232)
T cd03148 94 DSEYAAVFIPGGHGALI 110 (232)
T ss_pred hhhceEEEECCCCCChh
Confidence 35899999999988754
No 276
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=39.54 E-value=99 Score=29.27 Aligned_cols=80 Identities=11% Similarity=0.155 Sum_probs=43.2
Q ss_pred HHHHhhhhcC-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 98 KLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 98 ~l~~~~~~~~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
.|.+.+.... +.+|+++| |.+..- ...|...+...|+.. |+++....+.. -.+..+.+ .+.|.|++-||
T Consensus 19 ~l~~~l~~~~~~~~~i~~I--ptAs~~--~~~~~~~~~~a~~~l~G~~~~~~~~~~---~~~~~~~l--~~ad~I~l~GG 89 (212)
T cd03146 19 AIDDLLLSLTKARPKVLFV--PTASGD--RDEYTARFYAAFESLRGVEVSHLHLFD---TEDPLDAL--LEADVIYVGGG 89 (212)
T ss_pred HHHHHHHHhccCCCeEEEE--CCCCCC--HHHHHHHHHHHHhhccCcEEEEEeccC---cccHHHHH--hcCCEEEECCc
Confidence 3444444432 34444444 444432 223556788899999 98877665433 11222333 36788887774
Q ss_pred CChHHHHHHHHhc
Q 011517 176 DGILVEVVNGLLE 188 (484)
Q Consensus 176 DGtl~evingL~~ 188 (484)
-....++.|-+
T Consensus 90 --~~~~~~~~l~~ 100 (212)
T cd03146 90 --NTFNLLAQWRE 100 (212)
T ss_pred --hHHHHHHHHHH
Confidence 55555555544
No 277
>PRK12412 pyridoxal kinase; Reviewed
Probab=39.42 E-value=75 Score=31.19 Aligned_cols=75 Identities=12% Similarity=0.085 Sum_probs=33.4
Q ss_pred HHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEec-CCCchhhhhhcccccCCCCCHHHHH
Q 011517 155 AKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP-AGTGNGMIKSLLDLVGEPCKASNAI 229 (484)
Q Consensus 155 a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP-~GSgN~~A~sl~~~~g~~~~~~~A~ 229 (484)
+.+.++.+.......|++=||. |.-.+.++-+............++-... .|+|+.|+-.+....-...++.+|+
T Consensus 157 ~~~aa~~l~~~g~~~ViIt~G~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~t~GaGD~f~aa~aa~l~~g~~l~eA~ 233 (268)
T PRK12412 157 MKEAAKKIHALGAKYVLIKGGSKLGTETAIDVLYDGETFDLLESEKIDTTNTHGAGCTYSAAITAELAKGKPVKEAV 233 (268)
T ss_pred HHHHHHHHHhcCCCEEEEeccCCCCCCceEEEEEeCCEEEEEEeCccCCCCCCchHHHHHHHHHHHHHCCCCHHHHH
Confidence 4444555543455667776665 4221222222221110000112222233 5999999887643222223555554
No 278
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=39.37 E-value=83 Score=24.99 Aligned_cols=46 Identities=11% Similarity=0.113 Sum_probs=30.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+...+...|+.+|+.+.+..... ......+.++..++..++++|.+
T Consensus 19 ~a~~la~~Lr~~g~~v~~d~~~~--~l~k~i~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 19 LAEKLYAELQAAGVDVLLDDRNE--RPGVKFADADLIGIPYRIVVGKK 64 (94)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC--CcccchhHHHhcCCCEEEEECCc
Confidence 44577888888999887754322 22233345556788999999955
No 279
>PLN02285 methionyl-tRNA formyltransferase
Probab=39.18 E-value=79 Score=32.42 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE-ecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
.-+.|+-||..-.++..+....-++....++|+.+.++ ..+...+ .++.+.+...++|.+|++|
T Consensus 37 ~iv~Vvt~~~~~~gr~~~~~~~pv~~~A~~~gIp~~~v~~~~~~~~-~~~~~~l~~~~~Dliv~~~ 101 (334)
T PLN02285 37 EVAAVVTQPPARRGRGRKLMPSPVAQLALDRGFPPDLIFTPEKAGE-EDFLSALRELQPDLCITAA 101 (334)
T ss_pred eEEEEEeCCCCcccCCcccCCCHHHHHHHHcCCCcceecCccccCC-HHHHHHHHhhCCCEEEhhH
Confidence 45778889876555555555456778888889986543 2232222 1334445445799999875
No 280
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=38.84 E-value=2.8e+02 Score=27.40 Aligned_cols=77 Identities=8% Similarity=0.023 Sum_probs=49.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.++.+..+ -++. +.+.++..|+++|+++.-.. .....+...++.++...+.|.|++++...-...+++.+
T Consensus 134 ~~~v~~l~~~~~-~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~~~~~~pd~v~~~~~~~~~~~~~~~~ 209 (336)
T cd06360 134 YKKVVTVAWDYA-FGYE---VVEGFKEAFTEAGGKIVKELWVPFGTSDFASYLAQIPDDVPDAVFVFFAGGDAIKFVKQY 209 (336)
T ss_pred CCeEEEEeccch-hhHH---HHHHHHHHHHHcCCEEEEEEecCCCCcchHHHHHHHHhcCCCEEEEecccccHHHHHHHH
Confidence 577888876443 2222 22467788999998764322 22345556667777767899998876655566677777
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 210 ~~~ 212 (336)
T cd06360 210 DAA 212 (336)
T ss_pred HHc
Confidence 544
No 281
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.38 E-value=3.3e+02 Score=27.27 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~---~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (484)
.+.++...+.+++.+... ++..++. |.+ |...+...|.+......++.|++++.+.-. .+.+..+..++
T Consensus 9 k~va~~i~~~l~~~v~~l~~~g~~P~LaiI~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~ 84 (284)
T PRK14193 9 KATADEIKADLAERVAALKEKGITPGLGTVLV----GDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDE 84 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 345666666666654432 3333454 445 445677789988999999999998876533 34455556666
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. ...|+|++
T Consensus 85 lN~D~~V~GIlv 96 (284)
T PRK14193 85 LNADPACTGYIV 96 (284)
T ss_pred HhCCCCCCEEEE
Confidence 653 34677776
No 282
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=38.35 E-value=2.3e+02 Score=26.62 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=42.7
Q ss_pred HhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+-+...++..|+++.+..+... ....++.+.+...+.|+|++++-+-+ .+.++-+... ++|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~-------~ipvv~~ 84 (268)
T cd01575 19 QGISDVLEAAGYQLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAA-------GIPVVEI 84 (268)
T ss_pred HHHHHHHHHcCCEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhc-------CCCEEEE
Confidence 4667778888888877666432 22345566666678999999998765 3555555433 5666555
No 283
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=38.34 E-value=82 Score=31.84 Aligned_cols=65 Identities=18% Similarity=0.121 Sum_probs=37.1
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC------hhH----HHHHHHHhhcCC-CceEEEE-cCCChH
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLH----AKEIVKVLDLSK-YDGIVCV-SGDGIL 179 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~------~~~----a~~l~~~~~~~~-~d~IV~v-GGDGtl 179 (484)
.-||.|.|+... ...+ +.....|+..|+++.+-..-. .+. |.++.+.+...+ .|+|+|+ ||+|+.
T Consensus 4 I~viAPSs~~~~-~~~~-~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dpi~aI~~~rGGyg~~ 80 (305)
T PRK11253 4 FHLIAPSGYPID-QAAA-LRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTPNTIVLAVRGGYGAS 80 (305)
T ss_pred EEEEeCCCCCCC-HHHH-HHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCCccEEEEecccCCHh
Confidence 457889987632 2335 466778888898765533211 233 334433331122 7777665 888864
No 284
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=38.28 E-value=58 Score=32.21 Aligned_cols=54 Identities=13% Similarity=0.101 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
+|+.|++-|-+..- ..+...|+.+|+++.++.+.... +. ..++++||+||+.||
T Consensus 4 ~kvaVl~~pG~n~d-------~e~~~Al~~aG~~v~~v~~~~~~---~~--~~~l~~~DgLvipGG 57 (261)
T PRK01175 4 IRVAVLRMEGTNCE-------DETVKAFRRLGVEPEYVHINDLA---AE--RKSVSDYDCLVIPGG 57 (261)
T ss_pred CEEEEEeCCCCCCH-------HHHHHHHHHCCCcEEEEeecccc---cc--ccchhhCCEEEECCC
Confidence 57999998865532 24567888899988776554311 11 112468999999999
No 285
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=38.24 E-value=2.8e+02 Score=26.45 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=42.4
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHH-HhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVK-VLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~-~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
...++..+++.|+++.+..+.......+..+ .+...+.|+||+.+.|=. .+.++-|... .+|+-++
T Consensus 18 ~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~-------~iPvv~~ 84 (269)
T cd06297 18 LEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPT-------ERPVVLV 84 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhc-------CCCEEEE
Confidence 3577888888898888877765443344444 355568999999987633 3444554332 5676555
No 286
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=38.15 E-value=2.2e+02 Score=27.09 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=31.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
..+...|.+.|+++.++...... ..+. .++ .+++|+||+.||.|...+
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~~~-~~~~-~~~-~~~~dgliisGGp~~~~~ 61 (214)
T PRK07765 14 FNLVQYLGQLGVEAEVWRNDDPR-LADE-AAV-AAQFDGVLLSPGPGTPER 61 (214)
T ss_pred HHHHHHHHHcCCcEEEEECCCcC-HHHH-HHh-hcCCCEEEECCCCCChhh
Confidence 35667788889988876655421 1222 222 357999999999997653
No 287
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=38.11 E-value=2e+02 Score=29.49 Aligned_cols=77 Identities=18% Similarity=0.166 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIV 171 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV 171 (484)
++.+..+=...+......+++-|+++..+|++.-. +. +.++.+++++|.++-++.....+-++- +...+.|..|
T Consensus 215 ~~~~l~rR~~~I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~kL----~nf~eiD~fV 288 (332)
T TIGR00322 215 AKQFVKVRALAISKARKGKKFGVVLSSKGGQGRLR-LA-KNLKKNLEEAGKTVLIILLSNVSPAKL----LMFDQIDVFV 288 (332)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHHH----hCCCCcCEEE
Confidence 33443332233445566788999999999998744 44 689999999999998888877766431 2334577766
Q ss_pred EEc
Q 011517 172 CVS 174 (484)
Q Consensus 172 ~vG 174 (484)
.+|
T Consensus 289 ~~a 291 (332)
T TIGR00322 289 QVA 291 (332)
T ss_pred Eec
Confidence 554
No 288
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=38.05 E-value=2e+02 Score=22.97 Aligned_cols=52 Identities=12% Similarity=0.169 Sum_probs=31.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~ 162 (484)
..++.||..-..+.-.- -|-.+++.+|+..+++|+.+.......+++.+.+.
T Consensus 7 ~~~vvvf~k~~~~~~~C--p~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRC--GFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCC--cHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 35677886522221111 25578999999999999887765544454444443
No 289
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=37.98 E-value=1.5e+02 Score=31.48 Aligned_cols=81 Identities=11% Similarity=0.076 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~ 160 (484)
....|.+.|.+.+...-+.+.+.|++.+..|.+. ..+..+|+..|+++..+..+. +.+..++.+
T Consensus 152 ~~~~Y~~~l~~~i~~~~~~~~lkVvvD~~~G~~~------~~~~~ll~~lg~~v~~in~~~d~~~~~~~~~~~~l~~l~~ 225 (443)
T TIGR01455 152 AVGRYIEFLKSTLPRGLTLSGLKVVLDCANGAAY------KVAPHVFRELGAEVIAIGVEPDGLNINDGCGSTHLDALQK 225 (443)
T ss_pred HHHHHHHHHHHHhhcccccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEEccCCCCCCCCCCCCCCCHHHHHH
Confidence 3456777777766522234578999999988643 245667888888765432110 123333433
Q ss_pred HhhcCCCceEEEEcCCC
Q 011517 161 VLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (484)
.+...++|..++.-|||
T Consensus 226 ~v~~~~adlGia~DgD~ 242 (443)
T TIGR01455 226 AVREHGADLGIAFDGDA 242 (443)
T ss_pred HHhhcCCCEEEEEcCCC
Confidence 33334566666666665
No 290
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.97 E-value=3.2e+02 Score=27.48 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=40.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhc-CCCceEEEE
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDL-SKYDGIVCV 173 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~-~~~d~IV~v 173 (484)
+|+=..|.++. ..+...|.+......++.|++++.+.-. .+.+..+..++++. ...|+|++-
T Consensus 32 ~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvq 97 (288)
T PRK14171 32 SPKLAIVLVGD----NPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQ 97 (288)
T ss_pred CCeEEEEEeCC----CccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEe
Confidence 45433455544 4566789888899999999998876532 34455556666643 356787763
No 291
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=37.88 E-value=4.1e+02 Score=27.14 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=48.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.+|..... -++ -+.+.++..+++.|.++..... ....+....+.++...+.|.|++.|....+-.++..
T Consensus 160 ~~k~va~i~~d~~-~g~---~~~~~~~~~~~~~G~~v~~~~~~~~g~~D~~~~v~~l~~~~~d~v~~~~~~~~~~~~~k~ 235 (369)
T PRK15404 160 KPKRIAVLHDKQQ-YGE---GLARSVKDGLKKAGANVVFFEGITAGDKDFSALIAKLKKENVDFVYYGGYHPEMGQILRQ 235 (369)
T ss_pred CCCEEEEEeCCCc-hhH---HHHHHHHHHHHHcCCEEEEEEeeCCCCCchHHHHHHHHhcCCCEEEECCCchHHHHHHHH
Confidence 3578888876543 222 2335788889999988653221 222345556666666789988876655556666666
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+...
T Consensus 236 ~~~~ 239 (369)
T PRK15404 236 AREA 239 (369)
T ss_pred HHHC
Confidence 5543
No 292
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.78 E-value=3.2e+02 Score=25.90 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=40.6
Q ss_pred HhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..++..|+++.+..+..... -.++.+.+...++|+||+.+.+.. ++++.+... ++|+-.+
T Consensus 22 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~-------~ipvV~~ 86 (268)
T cd06277 22 RAIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKEL-------GIPFVLV 86 (268)
T ss_pred HHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhc-------CCCEEEE
Confidence 467778888898887766654332 223444455568999999987653 446655443 4565544
No 293
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=37.76 E-value=2.6e+02 Score=26.35 Aligned_cols=65 Identities=11% Similarity=0.167 Sum_probs=41.8
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..+.+ .....+..+.+...++|+||+++.+.. .++++-|... .+|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~~~-------~ipvV~~ 84 (268)
T cd06298 19 RGIDDIATMYKYNIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFKRS-------PTPVVLA 84 (268)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHhcC-------CCCEEEE
Confidence 467778888898888776653 233345566665578999999986543 3455555332 4666444
No 294
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=37.66 E-value=2.9e+02 Score=27.93 Aligned_cols=97 Identities=10% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~ 160 (484)
.+.++...+.+++.+..+ + +|+=..|.++. ..+...|.+......++.|++++.+.-. .+.+..+..+
T Consensus 15 k~vA~~i~~~l~~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~ 90 (299)
T PLN02516 15 KAIAKAIRSEIAEEVAQLSEKHGKVPGLAVVIVGS----RKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVH 90 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEEECC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 345666666666664432 3 34433455544 4566789888899999999998776442 3455566666
Q ss_pred Hhhc-CCCceEEEE---cCCChHHHHHHHHhcC
Q 011517 161 VLDL-SKYDGIVCV---SGDGILVEVVNGLLER 189 (484)
Q Consensus 161 ~~~~-~~~d~IV~v---GGDGtl~evingL~~~ 189 (484)
+++. ...|+|++- -..-.-.++++.+--.
T Consensus 91 ~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~ 123 (299)
T PLN02516 91 ELNANPDVHGILVQLPLPKHINEEKILNEISLE 123 (299)
T ss_pred HHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc
Confidence 6653 346777763 1233344555555433
No 295
>PRK14317 glmM phosphoglucosamine mutase; Provisional
Probab=37.59 E-value=1.5e+02 Score=31.64 Aligned_cols=81 Identities=9% Similarity=0.023 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~ 160 (484)
....|.+.|.+.++..-+.+++.|++++..|.+. ..+.++|+..|+++..+-.+. +.+..++.+
T Consensus 168 ~~~~Y~~~l~~~id~~i~~~~~kVvvD~~nG~~~------~~~~~ll~~LG~~v~~l~~~~dg~~~~~~~~~~~l~~l~~ 241 (465)
T PRK14317 168 LLDDYRDALLESLPDRVNLQGVKIVLDLAWGAAV------ACAPEVFKALGAEVICLHDQPDGDRINVNCGSTHLEPLQA 241 (465)
T ss_pred hHHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEEecccCCCCCCCCCchHhHHHHHH
Confidence 4456777776666421133578999999988653 356778888888776543321 123333433
Q ss_pred HhhcCCCceEEEEcCCC
Q 011517 161 VLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (484)
.....+.|.-++.=|||
T Consensus 242 ~v~~~~adlGia~DgDg 258 (465)
T PRK14317 242 AVLEHGADMGFAFDGDA 258 (465)
T ss_pred HHHhcCCCEEEEECCCC
Confidence 33334556666666665
No 296
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=37.57 E-value=3.1e+02 Score=24.96 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=43.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.++-.+.--.+ ...+..+| |+++..+.-.+..+....++++...++|.|| |+|+..+..+.
T Consensus 76 ~~~~Iavv~~~~~~~~------~~~~~~ll---~~~i~~~~~~~~~e~~~~i~~~~~~G~~viV---Gg~~~~~~A~~ 141 (176)
T PF06506_consen 76 YGPKIAVVGYPNIIPG------LESIEELL---GVDIKIYPYDSEEEIEAAIKQAKAEGVDVIV---GGGVVCRLARK 141 (176)
T ss_dssp CTSEEEEEEESS-SCC------HHHHHHHH---T-EEEEEEESSHHHHHHHHHHHHHTT--EEE---ESHHHHHHHHH
T ss_pred cCCcEEEEecccccHH------HHHHHHHh---CCceEEEEECCHHHHHHHHHHHHHcCCcEEE---CCHHHHHHHHH
Confidence 3467877766654432 24666777 6788888888899999999999878888777 45555555543
No 297
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.55 E-value=3.3e+02 Score=27.45 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHh
Q 011517 91 SKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~ 162 (484)
.++.-.+.+++.+... + +|+=..|.+++ ..+...|.+......++.|+.++.+.-. .+.+..+..+++
T Consensus 10 va~~i~~~lk~~v~~l~~~~g~~P~LaiI~vg~----d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~l 85 (294)
T PRK14187 10 IANDITEILATCIDDLKRQHNLFPCLIVILVGD----DPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINEL 85 (294)
T ss_pred HHHHHHHHHHHHHHHHHHccCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444454444322 3 34433455544 4567789888899999999998776443 344555666666
Q ss_pred hcC-CCceEEE
Q 011517 163 DLS-KYDGIVC 172 (484)
Q Consensus 163 ~~~-~~d~IV~ 172 (484)
+.+ ..|+|++
T Consensus 86 N~d~~V~GIlv 96 (294)
T PRK14187 86 NNDDSVHGILV 96 (294)
T ss_pred hCCCCCCEEEE
Confidence 533 4677776
No 298
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=37.54 E-value=66 Score=28.69 Aligned_cols=14 Identities=29% Similarity=0.532 Sum_probs=12.0
Q ss_pred CCCceEEEEcCCCh
Q 011517 165 SKYDGIVCVSGDGI 178 (484)
Q Consensus 165 ~~~d~IV~vGGDGt 178 (484)
..||.|++.||.+.
T Consensus 59 ~~~D~vvv~Gg~~~ 72 (166)
T TIGR01382 59 EEYDALVIPGGRAP 72 (166)
T ss_pred HHCcEEEECCCCCH
Confidence 46999999999884
No 299
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=37.52 E-value=1e+02 Score=25.34 Aligned_cols=80 Identities=8% Similarity=0.211 Sum_probs=45.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~ 187 (484)
.++++++.. .|-+...+.++++..+++.|+++++..+... ++. .. ..++|.|++ +-+=- ..+-+..+.
T Consensus 3 ~~~ILl~C~----~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~-~~~---~~--~~~~Dvill-~pqi~~~~~~i~~~~ 71 (95)
T TIGR00853 3 ETNILLLCA----AGMSTSLLVNKMNKAAEEYGVPVKIAAGSYG-AAG---EK--LDDADVVLL-APQVAYMLPDLKKET 71 (95)
T ss_pred ccEEEEECC----CchhHHHHHHHHHHHHHHCCCcEEEEEecHH-HHH---hh--cCCCCEEEE-CchHHHHHHHHHHHh
Confidence 456777763 3444456778999999999999988665442 222 22 246886654 22211 111122222
Q ss_pred cCcCcccccCCcEEEecC
Q 011517 188 EREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~ 205 (484)
.. ..+|+..||.
T Consensus 72 ~~------~~ipv~~I~~ 83 (95)
T TIGR00853 72 DK------KGIPVEVING 83 (95)
T ss_pred hh------cCCCEEEeCh
Confidence 21 3578888886
No 300
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.44 E-value=2.6e+02 Score=28.01 Aligned_cols=80 Identities=18% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhh
Q 011517 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~ 163 (484)
+.++...+.+++.+... +...++.+|. .|...+...|.+......++.|++++.+.-. .+.+..+..++++
T Consensus 10 ~vA~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 86 (284)
T PRK14190 10 EVAKEKREQLKEEVVKLKEQGIVPGLAVIL---VGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLN 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45555666666655432 3334554443 3555677789988899999999998876433 3445556666665
Q ss_pred c-CCCceEEE
Q 011517 164 L-SKYDGIVC 172 (484)
Q Consensus 164 ~-~~~d~IV~ 172 (484)
. ...|+|++
T Consensus 87 ~D~~V~GIlv 96 (284)
T PRK14190 87 ADPRINGILV 96 (284)
T ss_pred CCCCCCEEEE
Confidence 3 34677776
No 301
>PRK05569 flavodoxin; Provisional
Probab=37.28 E-value=96 Score=26.89 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=35.7
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
+++|++ .|+.|...++- +.++.-+...|.+++++....... .++.++|.|+++..
T Consensus 3 ki~iiY--~S~tGnT~~iA-~~i~~~~~~~g~~v~~~~~~~~~~-------~~~~~~d~iilgsP 57 (141)
T PRK05569 3 KVSIIY--WSCGGNVEVLA-NTIADGAKEAGAEVTIKHVADAKV-------EDVLEADAVAFGSP 57 (141)
T ss_pred eEEEEE--ECCCCHHHHHH-HHHHHHHHhCCCeEEEEECCcCCH-------HHHhhCCEEEEECC
Confidence 566666 44556666544 578888888888887766544322 13357899888763
No 302
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.20 E-value=3.4e+02 Score=27.16 Aligned_cols=80 Identities=16% Similarity=0.260 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhhhc---C--CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF---G--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~--~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (484)
+.|+.+.+.+++.+... + +|+=..|+++ ...|...|.+......++.|++++.+.- ..+.+..+..++
T Consensus 9 ~iA~~i~~~lk~~i~~l~~~g~~~P~Laii~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 84 (278)
T PRK14172 9 EVALKIKEEIKNFVEERKENGLSIPKIASILVG----NDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEE 84 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45666777777665433 2 3543345554 4456778988889999999999887643 234455566666
Q ss_pred hhc-CCCceEEEE
Q 011517 162 LDL-SKYDGIVCV 173 (484)
Q Consensus 162 ~~~-~~~d~IV~v 173 (484)
++. ++.|+|++-
T Consensus 85 lN~d~~V~GIlvq 97 (278)
T PRK14172 85 LNKDNNVHGIMLQ 97 (278)
T ss_pred HhCCCCCCeEEEc
Confidence 653 356787763
No 303
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=36.98 E-value=73 Score=29.57 Aligned_cols=46 Identities=24% Similarity=0.329 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 155 a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
|.+.+.....+.+|.+|.++|||=+--+++.+..+ ....-+++.+.
T Consensus 99 a~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~-------G~rv~v~~~~~ 144 (181)
T COG1432 99 AVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDK-------GKRVEVAGIEP 144 (181)
T ss_pred HHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHc-------CCEEEEEecCC
Confidence 34455555556899999999999999999988765 34444555544
No 304
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.86 E-value=3.4e+02 Score=27.44 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~-lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (484)
+.++...+.+++.+... +...++ .|.++ ...+...|.+......++.|++++.+.- ..+.+..+..++
T Consensus 9 ~iA~~i~~~lk~~v~~l~~~~g~~p~LaiI~vg----dd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 84 (297)
T PRK14186 9 ALAAEIEQRLQAQIESNLPKAGRPPGLAVLRVG----DDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQ 84 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeC----CChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555666666554422 333345 45554 4456778988889999999999877644 234455666666
Q ss_pred hhc-CCCceEEEE
Q 011517 162 LDL-SKYDGIVCV 173 (484)
Q Consensus 162 ~~~-~~~d~IV~v 173 (484)
++. ...|+|++-
T Consensus 85 lN~D~~V~GIivq 97 (297)
T PRK14186 85 LNQDERVDGILLQ 97 (297)
T ss_pred HhCCCCCCEEEEe
Confidence 653 346787763
No 305
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=36.68 E-value=1.6e+02 Score=28.60 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-------hHHHHHHHHhhc-CCCceEEEEcCCChHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------LHAKEIVKVLDL-SKYDGIVCVSGDGILV 180 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-------~~a~~l~~~~~~-~~~d~IV~vGGDGtl~ 180 (484)
.+++.+|+--. ....-.|.++++.+.+..++.+.+..++.. +...+.+.+... ...+.+.+||-++.+.
T Consensus 127 ~~~i~Li~~~r---~~~~~~~~~~L~~l~~~~~~~~~~~~s~~~~~~~~~~g~v~~~l~~~~~~~~~~~vyicGp~~mv~ 203 (253)
T cd06221 127 YGKVTLLYGAR---TPEDLLFKEELKEWAKRSDVEVILTVDRAEEGWTGNVGLVTDLLPELTLDPDNTVAIVCGPPIMMR 203 (253)
T ss_pred CCcEEEEEecC---ChHHcchHHHHHHHHhcCCeEEEEEeCCCCCCccCCccccchhHHhcCCCcCCcEEEEECCHHHHH
Confidence 45566555221 222334667777666554556665555322 122233333222 1346799999999999
Q ss_pred HHHHHHhcC
Q 011517 181 EVVNGLLER 189 (484)
Q Consensus 181 evingL~~~ 189 (484)
.+.+.|...
T Consensus 204 ~~~~~L~~~ 212 (253)
T cd06221 204 FVAKELLKL 212 (253)
T ss_pred HHHHHHHHc
Confidence 999999765
No 306
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=36.61 E-value=3.8e+02 Score=26.41 Aligned_cols=67 Identities=10% Similarity=0.217 Sum_probs=38.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+.+.+.|++ |.-..---..+ .+.++..+++.|+.+.+..+.. .....++.+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvv~-~~~~~~f~~~l-~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 125 (329)
T TIGR01481 58 RTTTVGVII-PDISNIYYAEL-ARGIEDIATMYKYNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGT 125 (329)
T ss_pred CCCEEEEEe-CCCCchhHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 445566666 43221111222 2456677788888877665543 2233345555555789999998754
No 307
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=36.59 E-value=4.3e+02 Score=26.04 Aligned_cols=77 Identities=12% Similarity=0.107 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.++.... .-+. ... +.++..+++.|+++.... .....+....+.++...+.|+|++.+-+.....++..+
T Consensus 136 ~~~v~~l~~~~-~~~~--~~~-~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~i~~~ 211 (336)
T cd06326 136 LKRIAVFYQDD-AFGK--DGL-AGVEKALAARGLKPVATASYERNTADVAAAVAQLAAARPQAVIMVGAYKAAAAFIRAL 211 (336)
T ss_pred CceEEEEEecC-cchH--HHH-HHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 57887775433 2222 222 567778888887653322 22223555666666555688777766444566778777
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
-+.
T Consensus 212 ~~~ 214 (336)
T cd06326 212 RKA 214 (336)
T ss_pred Hhc
Confidence 654
No 308
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=36.58 E-value=1.5e+02 Score=31.33 Aligned_cols=81 Identities=11% Similarity=0.040 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-----------HHHHH
Q 011517 91 SKRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-----------HAKEI 158 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~-~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-----------~a~~l 158 (484)
....+.+.|.+.++.. -+.+.+.|+++|..|.+. ..+..+|+..|+++..+..+..+ +..++
T Consensus 147 ~~~~Y~~~l~~~i~~~~i~~~~lkIvvd~~~G~~~------~~~~~ll~~lG~~v~~i~~~~d~~~~~~~~~~~~~l~~l 220 (441)
T cd05805 147 FVEYYIRGLLRALDTSGLKKSGLKVVIDYAYGVAG------IVLPGLLSRLGCDVVILNARLDEDAPRTDTERQRSLDRL 220 (441)
T ss_pred HHHHHHHHHHHHhCHHHHhhcCCeEEEECCCchHH------HHHHHHHHHcCCEEEEEecccCCccCCCCccchhHHHHH
Confidence 4456777776555321 123578999999988754 24667888889877654322221 22233
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.=|||
T Consensus 221 ~~~v~~~~adlgia~DgDa 239 (441)
T cd05805 221 GRIVKALGADFGVIIDPNG 239 (441)
T ss_pred HHHHHhCCCCEEEEEcCCC
Confidence 3333334677777777776
No 309
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=36.52 E-value=1.8e+02 Score=30.84 Aligned_cols=80 Identities=15% Similarity=0.089 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-------------ChhHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKE 157 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-------------~~~~a~~ 157 (484)
....+.+.|.+.++.. .-+.+.|++.|..|.+. ..+..+|+..|+++.....+ .+.+..+
T Consensus 145 ~~~~Y~~~l~~~i~~~-~i~~lkVvvd~~~Ga~~------~~~~~ll~~lg~~vv~~~~~~d~~Fp~~~p~P~~~~~l~~ 217 (445)
T PRK09542 145 VLADYAAFLRSLVDLS-GIRPLKVAVDAGNGMGG------HTVPAVLGGLPITLLPLYFELDGTFPNHEANPLDPANLVD 217 (445)
T ss_pred hHHHHHHHHHHhcccc-cCCCCEEEEECCCCchh------HHHHHHHHhCCCEEEEEecCcCCCCCCCCcCCCCHHHHHH
Confidence 3456777776666421 11468999999998754 24566777778765433211 1233344
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011517 158 IVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (484)
+.+.....++|..++.-|||
T Consensus 218 l~~~v~~~~adlGia~DgD~ 237 (445)
T PRK09542 218 LQAFVRETGADIGLAFDGDA 237 (445)
T ss_pred HHHHHHHcCCCEEEEECCCC
Confidence 54444445677777777777
No 310
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.50 E-value=3.5e+02 Score=27.10 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~ 162 (484)
+.|+...+.+++.+..+ ++..++.+|. .|...+...|.+......++.|++++.+.-. .+.+..+..+++
T Consensus 8 ~~A~~i~~~l~~~v~~l~~~~g~~P~LaiI~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~l 84 (285)
T PRK14191 8 ALSYKIEKDLKNKIQILTAQTGKRPKLAVIL---VGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDL 84 (285)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeEEEEE---eCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555565554432 3333454442 3445677789888899999999998776443 344555666666
Q ss_pred hc-CCCceEEE
Q 011517 163 DL-SKYDGIVC 172 (484)
Q Consensus 163 ~~-~~~d~IV~ 172 (484)
+. ...|+|++
T Consensus 85 N~D~~V~GIlv 95 (285)
T PRK14191 85 NTDQNIDGILV 95 (285)
T ss_pred hCCCCCCEEEE
Confidence 53 35677776
No 311
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=36.32 E-value=97 Score=30.42 Aligned_cols=75 Identities=23% Similarity=0.342 Sum_probs=45.9
Q ss_pred HHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC-eEEEEecCChhHHHH--HHHHhhcCCCceEEEEc
Q 011517 98 KLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKE--IVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 98 ~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~-~~~v~~T~~~~~a~~--l~~~~~~~~~d~IV~vG 174 (484)
.|++.....+-++- .+.|-|.++.-.+. +- .....+|+.-|+ ++.+..++...+|.. ..+++ .+.++|...|
T Consensus 40 iL~~f~~r~g~~~A-~i~I~paas~ep~~-iG-~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v--~~a~gIfftG 114 (293)
T COG4242 40 ILREFGGRAGGEKA-YIVIIPAASREPRA-IG-GNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKV--ENATGIFFTG 114 (293)
T ss_pred HHHHhccCCCCCce-EEEEEecCccChhh-hc-cchhhHHHHhccceeEEEeeecccccchHHHHHHH--HhCceEEEec
Confidence 33344333344454 77777888776532 22 344448888776 466666766666543 33333 5789999999
Q ss_pred CCC
Q 011517 175 GDG 177 (484)
Q Consensus 175 GDG 177 (484)
||-
T Consensus 115 GDQ 117 (293)
T COG4242 115 GDQ 117 (293)
T ss_pred Ccc
Confidence 995
No 312
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.28 E-value=2.8e+02 Score=27.96 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~-lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~ 161 (484)
+.++...+.+++.+..+ ++..++ .|.+ |...+...|.+......++.|++++.+.-. .+.+..+..++
T Consensus 8 ~iA~~i~~~l~~~v~~l~~~~g~~P~LaiI~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~ 83 (293)
T PRK14185 8 AISAQIKQEIAAEVAEIVAKGGKRPHLAAILV----GHDGGSETYVANKVKACEECGFKSSLIRYESDVTEEELLAKVRE 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 45566666666665432 333344 4555 445677889888899999999998775432 23445555666
Q ss_pred hhc-CCCceEEEE
Q 011517 162 LDL-SKYDGIVCV 173 (484)
Q Consensus 162 ~~~-~~~d~IV~v 173 (484)
++. ...|+|++-
T Consensus 84 lN~D~~V~GIlvq 96 (293)
T PRK14185 84 LNQDDDVDGFIVQ 96 (293)
T ss_pred HhCCCCCCeEEEe
Confidence 653 356777763
No 313
>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors. Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l
Probab=36.25 E-value=2.6e+02 Score=28.44 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=59.2
Q ss_pred eEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCC--hhHHH
Q 011517 81 DFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQ--QLHAK 156 (484)
Q Consensus 81 ~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~--~~~a~ 156 (484)
.+.|+....+ .....++-+++...+ .+++.|+.+-..+-+.. ..+.++..+++.|+++.... ... ..+..
T Consensus 112 ~~~fr~~~~~--~~~~~a~~~~l~~~~-~~~v~ii~~~~~~~g~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~~~d~~ 185 (389)
T cd06352 112 PTLTRTLPPA--RKLGEAVLALLRWFN-WHVAVVVYSDDSENCFF---TLEALEAALREFNLTVSHVVFMEDNSGAEDLL 185 (389)
T ss_pred CceeecCCcH--HHHHHHHHHHHHHcC-ceEEEEEEecCCccHHH---HHHHHHHHHHhcCCeEEEEEEecCCccchhHH
Confidence 4566654322 123344444444333 56777777766522222 12467777888888765432 222 24455
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
.+++++...+ |.||.++.......++..+.+.
T Consensus 186 ~~l~~i~~~~-~vii~~~~~~~~~~~l~q~~~~ 217 (389)
T cd06352 186 EILQDIKRRS-RIIIMCGSSEDVRELLLAAHDL 217 (389)
T ss_pred HHHHHhhhcc-eEEEEECCHHHHHHHHHHHHHc
Confidence 6667776555 8888888877778888777664
No 314
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=36.22 E-value=1.7e+02 Score=30.96 Aligned_cols=80 Identities=18% Similarity=0.160 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC------------hhHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------------QLHAKEI 158 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~------------~~~a~~l 158 (484)
....+.+.|.+.++... .+.+.|++.+..|.+. ..+.++|+..|+++..+..+. +.+..++
T Consensus 145 ~~~~Y~~~l~~~~~~~~-~~~lkIvid~~~G~~~------~~~~~~l~~lg~~v~~~~~~~d~~f~~~~p~p~~~~l~~l 217 (439)
T cd03087 145 AIDEYIEAILDKVDIDG-GKGLKVVVDCGNGAGS------LTTPYLLRELGCKVITLNANPDGFFPGRPPEPTPENLSEL 217 (439)
T ss_pred cHHHHHHHHHHhcCccc-CCCCEEEEECCCCchH------HHHHHHHHHcCCEEEEECCcCCCCCCCCCCCCCHHHHHHH
Confidence 34557777766654221 3578999999988764 357778888888776543221 1233344
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.-|||
T Consensus 218 ~~~v~~~~adlgia~D~Dg 236 (439)
T cd03087 218 MELVRATGADLGIAHDGDA 236 (439)
T ss_pred HHHHHhcCCCEEEEEcCCC
Confidence 4444445677777777776
No 315
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=36.09 E-value=68 Score=35.72 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=58.6
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeE---EEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~---~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
..+++-|.|=..|=-+. ..+=.+.+..+....|..+ .-.......+-.++.+.+..-+.|++|++|||||+..+.
T Consensus 111 ~~~V~G~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~~iLGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~ 190 (610)
T PLN03028 111 NSVLLGFLGGTEGLFAQKTLEITDDVLSTYKNQGGYDLLGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGVTSNTDAA 190 (610)
T ss_pred CcEEEEEccCHHHhcCCCeEECCHHHHHHHHhcCCchhccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 35677777655553222 2222245666666665421 111122233455566666666789999999999987542
Q ss_pred --HHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 184 --NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 184 --ngL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
...+... ..++++--||.==-||+..
T Consensus 191 ~Lae~~~~~----~~~i~VIGIPKTIDNDL~~ 218 (610)
T PLN03028 191 QLAETFAEA----KCKTKVVGVPVTLNGDLKN 218 (610)
T ss_pred HHHHHHHHc----CCCceEEEeceeeeCCCCC
Confidence 2222111 1268888889887899873
No 316
>PRK09701 D-allose transporter subunit; Provisional
Probab=35.99 E-value=1.8e+02 Score=28.87 Aligned_cols=87 Identities=9% Similarity=0.088 Sum_probs=50.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evi 183 (484)
.-..+.|++ |.....--.. +.+.++..+++.|+++.+..+.. ..+..+..+.+...++|+||+.+.|.. ..+.+
T Consensus 23 ~~~~Igvi~-~~~~~~f~~~-~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l 100 (311)
T PRK09701 23 AAAEYAVVL-KTLSNPFWVD-MKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPV 100 (311)
T ss_pred cCCeEEEEe-CCCCCHHHHH-HHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHH
Confidence 344666666 3322111122 23567778888888887764332 233345566666678999999998853 33445
Q ss_pred HHHhcCcCcccccCCcEEEe
Q 011517 184 NGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiI 203 (484)
..+.+. ++|+-.+
T Consensus 101 ~~~~~~-------giPvV~~ 113 (311)
T PRK09701 101 ARAWKK-------GIYLVNL 113 (311)
T ss_pred HHHHHC-------CCcEEEe
Confidence 555433 5676655
No 317
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.97 E-value=3e+02 Score=27.58 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhh
Q 011517 90 DSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~ 163 (484)
+.++...+.+++.+... ++..++.+|. .|...+...|.+......++.|++++.+.-. .+.+..+..++++
T Consensus 8 ~va~~i~~~l~~~v~~l~~~g~~P~Laii~---vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 84 (282)
T PRK14169 8 AVSKKILADLKQTVAKLAQQDVTPTLAVVL---VGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELN 84 (282)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCeEEEEE---eCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34555566666554432 3333454433 3445677789988999999999998776432 3344555566664
Q ss_pred c-CCCceEEE
Q 011517 164 L-SKYDGIVC 172 (484)
Q Consensus 164 ~-~~~d~IV~ 172 (484)
. ...|+|++
T Consensus 85 ~D~~V~GIlv 94 (282)
T PRK14169 85 HDPDVDAILV 94 (282)
T ss_pred CCCCCCEEEE
Confidence 3 34677776
No 318
>CHL00101 trpG anthranilate synthase component 2
Probab=35.93 E-value=69 Score=29.76 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=33.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
|-..+...|++.|+++.+...... .+. ++....+|+||+.||.|...+
T Consensus 11 ft~~l~~~l~~~g~~~~v~~~~~~-~~~----~~~~~~~dgiiisgGpg~~~~ 58 (190)
T CHL00101 11 FTYNLVQSLGELNSDVLVCRNDEI-DLS----KIKNLNIRHIIISPGPGHPRD 58 (190)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC-CHH----HHhhCCCCEEEECCCCCChHH
Confidence 434678889999998887665432 122 233347999999999998865
No 319
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=35.90 E-value=1.6e+02 Score=31.42 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHH
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKV 161 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~ 161 (484)
...|.+.|.+.++..-+.+.+-|++.+..|.+. ..+.++|+..|+++..+..+. +.+-.++.+.
T Consensus 157 ~~~Y~~~l~~~id~~i~~~~lkVvvD~~~G~~~------~~~~~ll~~lG~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~ 230 (448)
T PRK14315 157 HGRYIEFAKRTLPRDLRLDGLRVVVDCANGAAY------KVAPEALWELGAEVITIGVEPNGFNINEECGSTHPEALAKK 230 (448)
T ss_pred HHHHHHHHHHhcccccccCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEeccCCCCCCCCCCCCCCCHHHHHHH
Confidence 455777777766522334578999999988643 356778888888765442210 1122233333
Q ss_pred hhcCCCceEEEEcCCC
Q 011517 162 LDLSKYDGIVCVSGDG 177 (484)
Q Consensus 162 ~~~~~~d~IV~vGGDG 177 (484)
....+.|.-++.-|||
T Consensus 231 v~~~~adlGia~DgDg 246 (448)
T PRK14315 231 VREVRADIGIALDGDA 246 (448)
T ss_pred HHHcCCCEEEEEcCCC
Confidence 3334566666666665
No 320
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=35.87 E-value=53 Score=36.19 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=59.1
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEe-----cCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQE-----TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~-----T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
-.+++-|.|=..|=-+. ..+-.+.+..+....|.+. .- .+.+.+..++.+.+..-+.|++|++|||||+..
T Consensus 128 ~~~vyG~~~G~~GLl~~~~v~Lt~~~v~~~~n~GG~dl--LGS~R~k~~~~e~~~~~~~~l~~l~Id~LViIGGddS~~~ 205 (568)
T PLN02251 128 GSVLYGFKGGPAGIMKCKYVELTAEFIYPYRNQGGFDM--ICSGRDKIETPEQFKQAEETATKLDLDGLVVIGGDDSNTN 205 (568)
T ss_pred CCEEEEEccChHHhcCCCeEECCHHHhhhhhhCCCceE--ecccCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHH
Confidence 44677777665553222 2222334555556566432 21 233445555666666667899999999999865
Q ss_pred HHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
+. -|.+.-. +...++++--||.==-||+....
T Consensus 206 A~-~Lae~~~-~~g~~i~VIGVPKTIDNDL~~td 237 (568)
T PLN02251 206 AC-LLAEYFR-AKNLKTRVIGCPKTIDGDLKSKE 237 (568)
T ss_pred HH-HHHHHHH-hcCCCeeEEEeCceEeCCCCCCc
Confidence 43 2222100 01124777778887789988754
No 321
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.86 E-value=3.1e+02 Score=25.76 Aligned_cols=50 Identities=14% Similarity=0.147 Sum_probs=36.1
Q ss_pred HHhHHHHHHhcCCeEEEEecCCh--hHHHHHHHHhhcCCCceEEEEcCCChH
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
.+.++..+++.|+.+.+..++.. ....++.+.+...+.|+|++.+-+-.-
T Consensus 18 ~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~ 69 (264)
T cd01574 18 LAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAPLDDA 69 (264)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCCCCCh
Confidence 35788888888998888877543 334556667766789999998865443
No 322
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.85 E-value=3.6e+02 Score=26.98 Aligned_cols=79 Identities=19% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEE-EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~-lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~ 161 (484)
+.|+...+.|++.+..+ ++..++ .|.+ |...+...|.+......++.|++++.+.- ..+.+..+..++
T Consensus 8 ~iA~~i~~~l~~~v~~l~~~~g~~P~Laii~v----gdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~ 83 (281)
T PRK14183 8 ALSDKIKENVKKEVDELKLVKNIVPGLAVILV----GDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAM 83 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555566666655432 233344 4444 44567778998899999999999877652 234445566666
Q ss_pred hhc-CCCceEEE
Q 011517 162 LDL-SKYDGIVC 172 (484)
Q Consensus 162 ~~~-~~~d~IV~ 172 (484)
++. .+.|+|++
T Consensus 84 lN~D~~V~GIlv 95 (281)
T PRK14183 84 MNNNPNIDGILV 95 (281)
T ss_pred HhCCCccCeEEE
Confidence 653 34677776
No 323
>PTZ00287 6-phosphofructokinase; Provisional
Probab=35.76 E-value=66 Score=39.06 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=46.1
Q ss_pred HhHHHHHHhcCCeEEEEecC------ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 131 DDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~------~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
+.+..++..-|... .-|. ...+....++.+...+.|++|++|||||+..+. -|.+.-. ....++.+--||
T Consensus 889 ~~V~~i~n~GGtiL--lgssR~~~f~t~e~~~ka~~~lk~l~ID~LVvIGGDgS~t~A~-~LaE~f~-~~gi~i~VIGVP 964 (1419)
T PTZ00287 889 DNIAKHVNQGGLEL--TGNSPEHSLFDKENRNKVCETVTNLQLNGLVMPGSNVTITEAA-LLAEYFL-EKKIPTSVVGIP 964 (1419)
T ss_pred HHHhhHHHcCCeee--cCCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHH-HHHHHHH-hcCCCccEEEeC
Confidence 45566666666433 1121 234445555666666889999999999987543 2222100 001234477788
Q ss_pred CCCchhhhh
Q 011517 205 AGTGNGMIK 213 (484)
Q Consensus 205 ~GSgN~~A~ 213 (484)
.==-||+..
T Consensus 965 kTIDNDL~~ 973 (1419)
T PTZ00287 965 LTGSNNLIH 973 (1419)
T ss_pred ceeeCCCCC
Confidence 877899876
No 324
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=35.72 E-value=3.5e+02 Score=26.78 Aligned_cols=86 Identities=6% Similarity=0.127 Sum_probs=49.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+.+.+.+++...+..-- ..+. +.++..+++.|+++.+..+.+. ....+..+.+...+.|+||+++-+.. .+.+..|
T Consensus 62 ~~~~Igvi~~~~~~~~~-~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l 138 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVF-AEVL-RGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNIDGLILTERTHT-PRTLKMI 138 (331)
T ss_pred CCCEEEEEeCCCcchhH-HHHH-HHHHHHHHHCCCEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHH
Confidence 44566777643222111 1222 4677778888888776655432 22334555555578999999875533 3555555
Q ss_pred hcCcCcccccCCcEEEe
Q 011517 187 LEREDWNDAIKVPLGVV 203 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiI 203 (484)
... ++|+-.+
T Consensus 139 ~~~-------~iPvV~~ 148 (331)
T PRK14987 139 EVA-------GIPVVEL 148 (331)
T ss_pred HhC-------CCCEEEE
Confidence 433 5777654
No 325
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=35.54 E-value=85 Score=23.08 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=41.3
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH------HHHHhcCcCcccccCCcEEEecC
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV------VNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev------ingL~~~~~~~~~~~~pigiIP~ 205 (484)
.....+...++.+++.......... .....++|.||+.||..+.... +.-+.+.-. ...+|.-+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~ 87 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAA----AGKPVLGICL 87 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccc----cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHH----cCCEEEEEec
Confidence 4566777777877776554443222 2334689999999999998654 333322211 1457766666
Q ss_pred CC
Q 011517 206 GT 207 (484)
Q Consensus 206 GS 207 (484)
|+
T Consensus 88 g~ 89 (92)
T cd03128 88 GA 89 (92)
T ss_pred cc
Confidence 64
No 326
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.50 E-value=1.9e+02 Score=27.56 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=39.6
Q ss_pred HhHHHHHHh--cCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEec
Q 011517 131 DDVKPLLED--ANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 131 ~~v~p~l~~--ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiIP 204 (484)
.-++..+++ .++.+.+..+.... .-.+..+.+...++|+||+.+.|.. ..+.+..+.+. ++|+-.+-
T Consensus 19 ~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~-------~ipvv~~~ 89 (271)
T cd06321 19 KGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA-------GIVVVAVD 89 (271)
T ss_pred HHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC-------CCeEEEec
Confidence 466777777 45444444443322 1224445555568999999988764 45666666543 56776663
No 327
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=35.35 E-value=71 Score=32.87 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=45.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-------ChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------QQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-------~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
-|+.+++-.|.=-+-- .+ +.++..|++.+|.|+|+.-. +..+|.+++++ +++|..|.+|| |..++
T Consensus 70 aKk~llvTDkni~~~~---~~-~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~---~~fDs~vaiGG-GSa~D 141 (465)
T KOG3857|consen 70 AKKTLLVTDKNIAKLG---LV-KVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKK---KNFDSFVAIGG-GSAHD 141 (465)
T ss_pred ccceEEeeCCChhhcc---cH-HHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHh---cccceEEEEcC-cchhh
Confidence 4567777666432211 23 68899999999999886432 23466677766 57999999998 55555
Q ss_pred HHH
Q 011517 182 VVN 184 (484)
Q Consensus 182 vin 184 (484)
...
T Consensus 142 taK 144 (465)
T KOG3857|consen 142 TAK 144 (465)
T ss_pred hHH
Confidence 433
No 328
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=35.24 E-value=1.4e+02 Score=21.54 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=23.9
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHh
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~ 162 (484)
-..++.+|+..|++++++.-.....+.+.+++.
T Consensus 12 C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~ 44 (60)
T PF00462_consen 12 CKKAKEFLDEKGIPYEEVDVDEDEEAREELKEL 44 (60)
T ss_dssp HHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeeeEcccccchhHHHHHHHH
Confidence 357888999999999887666655555555554
No 329
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=35.24 E-value=1.5e+02 Score=23.95 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=40.9
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 99 l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
+++++..+.+|-.+.+|+.|..+.-+.... .+..+-+.. ++++.++.. .+..+++++......=.+++
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~---~~~~l~~~~~~i~~~~vd~---~~~~e~a~~~~V~~vPt~vi 71 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQ---ALNLMAVLNPNIEHEMIDG---ALFQDEVEERGIMSVPAIFL 71 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHH---HHHHHHHHCCCceEEEEEh---HhCHHHHHHcCCccCCEEEE
Confidence 456677778899999999999887654322 222222232 466665543 24456677766544445543
No 330
>PF05893 LuxC: Acyl-CoA reductase (LuxC); InterPro: IPR008670 This family consists of several bacterial Acyl-CoA reductase (LuxC) proteins. The channelling of fatty acids into the fatty aldehyde substrate for the bacterial bioluminescence reaction is catalysed by a fatty acid reductase multienzyme complex, which channels fatty acids through the thioesterase (LuxD), synthetase (LuxE) and reductase (LuxC) components [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0008218 bioluminescence, 0055114 oxidation-reduction process
Probab=35.19 E-value=48 Score=34.86 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=30.1
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcc-cccCCcEEEecCC
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWN-DAIKVPLGVVPAG 206 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~-~~~~~pigiIP~G 206 (484)
.++.+.+. ..+|++|+.|||-|+..+-.-+-.....- -..+..+++|=.-
T Consensus 159 ~~~~~~~~-~~~D~vv~wGgd~ti~~ir~~~~~~~~~i~fg~k~S~avi~~~ 209 (399)
T PF05893_consen 159 EELEEALS-QQADAVVAWGGDETIRAIRQPLPPGARLIEFGPKYSFAVIDAE 209 (399)
T ss_pred hHHHHHHH-HHCCEEEEeCCHHHHHHHHHHcCCCCcEeeeCCceEEEEEcCc
Confidence 34444442 56899999999999999887332222111 1235666666544
No 331
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=35.10 E-value=1e+02 Score=33.44 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=30.0
Q ss_pred EEEcCCCCCcch------hhchHHhHHHHHHhcC-CeEEEEecCChh-HHHHHHHHhhcCCCceEEE
Q 011517 114 IFVNPFGGKKIA------SKIFLDDVKPLLEDAN-IQFTVQETTQQL-HAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 114 viiNP~sG~~~a------~~~~~~~v~p~l~~ag-~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~ 172 (484)
+||||....+.+ ...+...++..|+.+| .+++++...... ...++++.+...++|.|.+
T Consensus 3 lli~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~~pdvVgi 69 (497)
T TIGR02026 3 LILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAHCPDLVLI 69 (497)
T ss_pred EEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhcCcCEEEE
Confidence 567775443322 2234456777777778 566665332211 1233444444446665554
No 332
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=35.03 E-value=73 Score=35.01 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=59.4
Q ss_pred CCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEec-----CChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 108 RPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
..-+++-|.|=..|=-+. ..+=.+.+..+...-|.+ +.-| +...+...+++.+...+.|++|++|||||+.
T Consensus 103 ~~~~v~G~~~G~~GLl~~~~i~Lt~~~v~~~~~~GGsd--~LGs~R~k~~~~e~~~~i~~~l~~~~Id~LviIGGddS~~ 180 (550)
T cd00765 103 KGSTLYGFKGGPAGILKCDYIELNAEYIQPYRNTGGFD--MICSGRTKIETEDQFKQAEETAKKLDLDALVVIGGDDSNT 180 (550)
T ss_pred CCcEEEEEccCHHHhcCCCeEECCHHHHhHHHhCCChh--hhcCcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 345778887755543222 112223566665555541 1111 2344555566666666789999999999987
Q ss_pred HHH--HHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 181 EVV--NGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 181 evi--ngL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.+. ...+.. ...++++--||.==-||+...
T Consensus 181 ~A~~Lae~~~~----~g~~i~VIGVPKTIDNDl~~t 212 (550)
T cd00765 181 NAALLAENFRS----KGLKTRVIGVPKTIDGDLKNK 212 (550)
T ss_pred HHHHHHHHHHh----cCCCceEEEEeeeecCCCCCC
Confidence 543 222211 123578888898888999864
No 333
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=34.98 E-value=2e+02 Score=25.73 Aligned_cols=60 Identities=23% Similarity=0.124 Sum_probs=40.4
Q ss_pred hchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 127 KIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 127 ~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
..-.+.+..+|+.+|+++.. +....--.|+++.+...+.|.|+++|=||-=.+.+.++.+
T Consensus 26 d~gakvia~~l~d~GfeVi~--~g~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve 85 (143)
T COG2185 26 DRGAKVIARALADAGFEVIN--LGLFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVE 85 (143)
T ss_pred ccchHHHHHHHHhCCceEEe--cCCcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHH
Confidence 33446789999999986543 4333333566666655678999999999875555555544
No 334
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=34.84 E-value=60 Score=25.30 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=31.2
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
.....|..++++++++......... .....++|+|++.||.+.....
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~d~lii~g~~~~~~~~ 62 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVES----DVDLDDYDGLILPGGPGTPDDL 62 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceec----cCChhccCEEEECCCCCchhhh
Confidence 5666788888887776444432111 1234589999999999887654
No 335
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.73 E-value=3.1e+02 Score=27.53 Aligned_cols=94 Identities=15% Similarity=0.210 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhhhhc---CCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF---GRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~ 162 (484)
+.++...+.+++.+..+ +...++. |.+ |...|...|.+......++.|++++.+.-.. +.+..+..+++
T Consensus 10 ~ia~~i~~~~~~~v~~l~~~g~~p~Laii~v----g~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~l 85 (286)
T PRK14175 10 QIAKDYRQGLQDQVEALKEKGFTPKLSVILV----GNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRL 85 (286)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666666666665433 3333454 444 4456777898888999999999988764432 34455556666
Q ss_pred hc-CCCceEEEE---cCCChHHHHHHHHh
Q 011517 163 DL-SKYDGIVCV---SGDGILVEVVNGLL 187 (484)
Q Consensus 163 ~~-~~~d~IV~v---GGDGtl~evingL~ 187 (484)
+. ...|+|++- -..=.-.++++.+-
T Consensus 86 N~d~~V~GIivq~Plp~~i~~~~i~~~I~ 114 (286)
T PRK14175 86 NNDDSVSGILVQVPLPKQVSEQKILEAIN 114 (286)
T ss_pred hCCCCCCEEEEeCCCCCCCCHHHHHhccC
Confidence 43 356787763 22233344555443
No 336
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=34.44 E-value=3.7e+02 Score=25.38 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.7
Q ss_pred HhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..++..|+++.+..+.... ...++.+.+...++|+|++++.+-.-. .+..+... ++|+-.+
T Consensus 19 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~-~~~~~~~~-------~ipvV~~ 84 (264)
T cd06274 19 KRLEALARERGYQLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDD-PYYLCQKA-------GLPVVAL 84 (264)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchH-HHHHHHhc-------CCCEEEe
Confidence 56777788889888887675422 223556666667899999998864322 24444332 5676555
No 337
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=34.35 E-value=2.6e+02 Score=26.68 Aligned_cols=69 Identities=14% Similarity=0.150 Sum_probs=42.4
Q ss_pred HhHHHHHHhc-----CCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDA-----NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~a-----g~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++. |+++.+..+.+ .....++.+.+...+.|+|++.+.|.. +.+.++.+.+. .+|+-.+
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~-------gIpvV~~ 91 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKA-------GIFVVVV 91 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHC-------CCeEEEE
Confidence 3556666665 45555554443 222334555565568999999998865 45667666543 6787776
Q ss_pred cCC
Q 011517 204 PAG 206 (484)
Q Consensus 204 P~G 206 (484)
-.+
T Consensus 92 d~~ 94 (274)
T cd06311 92 DRG 94 (274)
T ss_pred cCC
Confidence 554
No 338
>PRK05637 anthranilate synthase component II; Provisional
Probab=34.29 E-value=1.1e+02 Score=29.14 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=34.1
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
..+...|+..|..++++..... . +++...++|+||+.||-|.+.+.
T Consensus 15 ~nl~~~l~~~g~~~~v~~~~~~--~----~~l~~~~~~~iIlsgGPg~~~d~ 60 (208)
T PRK05637 15 YNLVDAFAVAGYKCTVFRNTVP--V----EEILAANPDLICLSPGPGHPRDA 60 (208)
T ss_pred HHHHHHHHHCCCcEEEEeCCCC--H----HHHHhcCCCEEEEeCCCCCHHHh
Confidence 3588889999998888765422 2 22333478999999999999886
No 339
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=34.27 E-value=1.5e+02 Score=28.65 Aligned_cols=45 Identities=18% Similarity=0.212 Sum_probs=33.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
+-++..+++.|+++.+..+....+..+..+.+...++|+||+++-
T Consensus 22 ~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~~vdgiI~~~~ 66 (265)
T cd06354 22 EGLERAAKELGIEYKYVESKSDADYEPNLEQLADAGYDLIVGVGF 66 (265)
T ss_pred HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhCCCCEEEEcCc
Confidence 467788888998888876665555556667776678999999864
No 340
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=34.09 E-value=1.4e+02 Score=26.74 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=33.0
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++.++..-...|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 32 ~~~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~-~~~dgiiI 73 (146)
T PRK05395 32 EALLEEEAAELGVELEFFQSNHEGELIDRIHEAR-DGADGIII 73 (146)
T ss_pred HHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-cCCcEEEE
Confidence 3455555566789999999999999988888874 47888885
No 341
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=34.02 E-value=42 Score=27.24 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=20.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
+.+.|..+++++++.|+++|++.+
T Consensus 78 r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 78 RTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred ceEEEECCCHHHHHHHHHHHHhhC
Confidence 467788899999999999998753
No 342
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=34.01 E-value=83 Score=30.94 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=28.1
Q ss_pred CcEEEEEEcCCCCCcch-----hhchHHhHHHHHHhcCCeE-EEEecCCh
Q 011517 109 PKRLYIFVNPFGGKKIA-----SKIFLDDVKPLLEDANIQF-TVQETTQQ 152 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a-----~~~~~~~v~p~l~~ag~~~-~v~~T~~~ 152 (484)
...++|||||.+|.|.+ ...|...+..+-..+|+++ =.+-|.+.
T Consensus 30 ~~~f~vIiNP~sGPG~~~~~~pd~~Y~~~i~~L~~~~nv~vlGYV~T~Yg 79 (253)
T PF12138_consen 30 SVPFTVIINPNSGPGSAPDPWPDANYAAAIPRLNSYANVRVLGYVHTSYG 79 (253)
T ss_pred CCcEEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHhcCCCcEEEEEEcccc
Confidence 34589999999999965 3357544444437777653 23445553
No 343
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=33.90 E-value=2.4e+02 Score=25.61 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=40.0
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHh-hcCCCceEEEEcCCCh-----HHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVL-DLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~-~~~~~d~IV~vGGDGt-----l~evingL~~~ 189 (484)
..++.+|++.|+++.. +.....+...+..+++ +..++|.||+.||=|. ..|++..++++
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t~eal~~l~~~ 91 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVTPEALEPLFDK 91 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCcHHHHHHHHCC
Confidence 3678889999987654 3345555555555554 2357999999999664 55677777665
No 344
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=33.84 E-value=2.7e+02 Score=26.41 Aligned_cols=67 Identities=9% Similarity=0.185 Sum_probs=41.6
Q ss_pred HHhHHHHHHhc-CCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~a-g~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.++..+.+. |+++.+..+.+ ...-.+..+++...+.|+||+.+.+-. ..+.+..+... ++|+-++
T Consensus 18 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~-------~ipvV~~ 87 (270)
T cd06308 18 NDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRA-------GIPVILL 87 (270)
T ss_pred HHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHC-------CCCEEEe
Confidence 34667777775 78776655432 222334555555568999999987743 34556555443 6777666
No 345
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=33.78 E-value=1.4e+02 Score=26.81 Aligned_cols=43 Identities=9% Similarity=0.119 Sum_probs=33.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++...+..|++++++.+.+.+...+..++.. +++|+||+
T Consensus 31 i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~-~~~dgiII 73 (146)
T PRK13015 31 VEALCRAAAEALGLEVEFRQSNHEGELIDWIHEAR-GDVAGIVI 73 (146)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-hcCCEEEE
Confidence 34556666666789999999999999998888873 56788775
No 346
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.46 E-value=4.5e+02 Score=25.73 Aligned_cols=77 Identities=6% Similarity=-0.037 Sum_probs=46.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.+|....+.-+.. ..+.++..+++.|+++... ......+....++++...+.|.|++.+....+..++..+
T Consensus 135 ~~~v~ii~~~~~~~~~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~~~~~~~~~~~ 211 (334)
T cd06347 135 AKKAAVLYDNSSDYSKG---LAKAFKEAFKKLGGEIVAEETFNAGDTDFSAQLTKIKAKNPDVIFLPGYYTEVGLIAKQA 211 (334)
T ss_pred CcEEEEEEeCCCchhHH---HHHHHHHHHHHcCCEEEEEEEecCCCCcHHHHHHHHHhcCCCEEEEcCchhhHHHHHHHH
Confidence 46788777432221221 2246777788888766432 223334566677777667889888877666666666655
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 212 ~~ 213 (334)
T cd06347 212 RE 213 (334)
T ss_pred HH
Confidence 43
No 347
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=33.29 E-value=2.8e+02 Score=27.04 Aligned_cols=56 Identities=9% Similarity=-0.055 Sum_probs=36.4
Q ss_pred HhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHH
Q 011517 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGL 186 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evingL 186 (484)
+-++..+++.|+++.+..+. ....-.+..+.+...++|+||+.+.|... .+.+..+
T Consensus 19 ~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 19 YGMVEQAKHLGVELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred HHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH
Confidence 45677788888888776554 22333456666666789999998876432 3445443
No 348
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=33.14 E-value=92 Score=26.99 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=37.0
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCC-----hHHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG-----tl~evingL~~ 188 (484)
..++..|++.|+++.. +.........+.++++. +.+|.||+.||=| ...|++..+..
T Consensus 21 ~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~-~~~dliittGG~g~g~~D~t~~~l~~~~~ 84 (135)
T smart00852 21 PALAELLTELGIEVTRYVIVPDDKEAIKEALREAL-ERADLVITTGGTGPGPDDVTPEAVAEALG 84 (135)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEEcCCCCCCCCcCcHHHHHHHhC
Confidence 4688889999986533 23344444455554443 4699999999966 35566766654
No 349
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=33.10 E-value=1.3e+02 Score=27.66 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=35.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh---------hH---HHHHHHHhhcCCCceEEEEcCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---------LH---AKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~---------~~---a~~l~~~~~~~~~d~IV~vGGD 176 (484)
.||++|++.|..-.-. + -....+|..+|+++++...+.. +- ......+...++||.|++.||.
T Consensus 2 ~~~~~il~~~g~~~~e----~-~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~ 76 (196)
T PRK11574 2 SASALVCLAPGSEETE----A-VTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGI 76 (196)
T ss_pred CceEEEEeCCCcchhh----H-hHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCC
Confidence 4678888877542211 2 1345567777877666433211 10 0001223333479999999996
Q ss_pred Ch
Q 011517 177 GI 178 (484)
Q Consensus 177 Gt 178 (484)
+.
T Consensus 77 ~~ 78 (196)
T PRK11574 77 KG 78 (196)
T ss_pred ch
Confidence 53
No 350
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.98 E-value=3e+02 Score=27.63 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=48.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++.++... ..-++. ..+.++..++++|+++..... ....+...++.++...+.|.|++.+..+....++..+
T Consensus 144 ~~~v~ii~~~-~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~ 219 (362)
T cd06343 144 NAKIAVLYQN-DDFGKD---YLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKA 219 (362)
T ss_pred CceEEEEEec-cHHHHH---HHHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHHHhcCCCEEEEEcCcHHHHHHHHHH
Confidence 4677777643 322322 335778889999987543322 2222445566666667899999888776777778777
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 220 ~~~ 222 (362)
T cd06343 220 AEL 222 (362)
T ss_pred HHc
Confidence 554
No 351
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=32.93 E-value=79 Score=34.80 Aligned_cols=103 Identities=15% Similarity=0.152 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEec-----CChhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011517 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
...-+++-|.|=..|=-+. ..+-.+.+..+...-|.+ +.-| ....+...+++.+..-+.|++|++|||||+
T Consensus 100 ~~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~i~~~l~~~~Id~LviIGGd~S~ 177 (555)
T PRK07085 100 NPDSKLFGFIGGPLGLLNGKYIEITEEVIDEYRNTGGFD--MIGSGRTKIETEEQKEACLETVKKLKLDGLVIIGGDDSN 177 (555)
T ss_pred cCCCEEEEEecChHHhcCCCeEECCHHHHhHHHhCCChh--hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHH
Confidence 3446788888766664332 122223466666555541 1111 223355566666666688999999999998
Q ss_pred HHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 180 VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 180 ~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
..+. -|.+.-. +...++++--||.==-||+..
T Consensus 178 ~~A~-~Lae~~~-~~~~~i~VIGIPkTIDNDl~~ 209 (555)
T PRK07085 178 TNAA-ILAEYFA-KHGCKTQVIGVPKTIDGDLKN 209 (555)
T ss_pred HHHH-HHHHHHH-HhCCCccEEEEeeeecCCCCC
Confidence 7543 2322100 012368888999888899974
No 352
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=32.89 E-value=1.3e+02 Score=26.62 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=37.1
Q ss_pred HhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHh
Q 011517 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLL 187 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~ 187 (484)
..++..|++.|+++... .....+...+..+++. +++|.||+.||=|. ..+++..+.
T Consensus 30 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~DliIttGG~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 30 PLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAV-DEADVVLTTGGTGVGPRDVTPEALEELG 92 (144)
T ss_pred HHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHH-hCCCEEEECCCCCCCCCccHHHHHHHhC
Confidence 46888899999876543 3444444455555543 47999999999775 456666554
No 353
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=32.82 E-value=8e+02 Score=28.07 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=32.1
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
..+...|+..|+++.++..... .++ .+..++|+||+.||-|+..+
T Consensus 530 ~~l~~~L~~~G~~v~vv~~~~~---~~~---~~~~~~DgLILsgGPGsp~d 574 (717)
T TIGR01815 530 HTLANYLRQTGASVTTLRHSHA---EAA---FDERRPDLVVLSPGPGRPAD 574 (717)
T ss_pred HHHHHHHHHCCCeEEEEECCCC---hhh---hhhcCCCEEEEcCCCCCchh
Confidence 4678889999998877654432 122 22357999999999999765
No 354
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=32.72 E-value=4.5e+02 Score=25.15 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=56.2
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcC-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE-EEecC----ChhHHHH
Q 011517 84 FEPLSEDSKRLWCEKLRDFIDSFG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT-VQETT----QQLHAKE 157 (484)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~~~~~~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~-v~~T~----~~~~a~~ 157 (484)
+...+.+......+.|-+.+...+ .++++.+|..+......+...+ +-.+..|++.|+... ++.+. ....+.+
T Consensus 103 V~~d~~~~g~~~~~~l~~~~~~~g~~~~~i~~i~~~~~~~~~~~~R~-~G~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (289)
T cd01540 103 VGMSATKIGEQVGEAIADEMKKRGWDPKEVGALRITYDELDTAKPRT-DGALEALKAPGFPEANIFQAPQKTTDTEGAFD 181 (289)
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhcCCCcceEEEEecCCCCcchhhHH-HHHHHHHhcCCCCcceEecccccCcchhhHHH
Confidence 333344444555555555443322 3567777754322222222223 356667777777532 22221 1344555
Q ss_pred HHHHhhcC--CCce-EEEEcCCChHHHHHHHHhcC
Q 011517 158 IVKVLDLS--KYDG-IVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 158 l~~~~~~~--~~d~-IV~vGGDGtl~evingL~~~ 189 (484)
.++++-.. ++++ .|++.+|.+...+++.|-+.
T Consensus 182 ~~~~~l~~~~~~~~~~i~~~~d~~a~g~~~al~~~ 216 (289)
T cd01540 182 AAASTLTKNPNVKNWIIYGLNDETVLGAVRATEQS 216 (289)
T ss_pred HHHHHHHhCCCcCeeEEEeCCcHHHHHHHHHHHHc
Confidence 55555322 3453 68889999999999988765
No 355
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=32.68 E-value=50 Score=36.23 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=59.0
Q ss_pred CCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeEEEEec-----CChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 108 RPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+-.+++-|.|=..|=-+. ..+-.+.+..+...-|.+ +.-| ....+-..+++.+...+.|++|++|||||+.
T Consensus 98 ~~~~v~G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~--~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~ 175 (539)
T TIGR02477 98 PNSKLYGFIGGPLGLLDNNYVELTKELIDTYRNTGGFD--IIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNT 175 (539)
T ss_pred CCcEEEEEecChHHhcCCCeEeCCHHHHhHHHhCCCch--hhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHH
Confidence 345777777766554322 222223566666665632 1111 1234445566666666889999999999987
Q ss_pred HHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.+. -|.+.-. +...++++--||.==-||+..
T Consensus 176 ~A~-~Lae~~~-~~g~~i~VIGIPkTIDNDl~~ 206 (539)
T TIGR02477 176 NAA-LLAEYFA-KHGLKTQVIGVPKTIDGDLKN 206 (539)
T ss_pred HHH-HHHHHHH-hcCCCceEEEEeeeecCCCCC
Confidence 543 2222000 012358888889877899975
No 356
>PRK12616 pyridoxal kinase; Reviewed
Probab=32.44 E-value=1.2e+02 Score=29.76 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=15.4
Q ss_pred CCCchhhhhhcccccCCCCCHHHHH
Q 011517 205 AGTGNGMIKSLLDLVGEPCKASNAI 229 (484)
Q Consensus 205 ~GSgN~~A~sl~~~~g~~~~~~~A~ 229 (484)
.|||+.|+-.+....-...++.+|+
T Consensus 212 ~GaGD~fsaalaa~l~~g~~l~~Av 236 (270)
T PRK12616 212 HGAGCTFSAAVTAELAKGSEVKEAI 236 (270)
T ss_pred CcHHHHHHHHHHHHHHCCCCHHHHH
Confidence 6999999887654222233555554
No 357
>PRK09267 flavodoxin FldA; Validated
Probab=32.31 E-value=1.1e+02 Score=27.57 Aligned_cols=85 Identities=16% Similarity=0.112 Sum_probs=42.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
++++|++ .|..|...++ .+.++..|..+ +++++..+... ..++.+||.||++. ++|-+...+..+
T Consensus 2 mki~IiY--~S~tGnT~~v-A~~Ia~~l~~~--~~~~~~~~~~~-------~~~l~~~d~vi~g~pt~~~G~~~~~~~~f 69 (169)
T PRK09267 2 AKIGIFF--GSDTGNTEDI-AKMIQKKLGKD--VADVVDIAKAS-------KEDFEAYDLLILGIPTWGYGELQCDWDDF 69 (169)
T ss_pred CeEEEEE--ECCCChHHHH-HHHHHHHhCCC--ceEEEEhhhCC-------HhhHhhCCEEEEEecCcCCCCCCHHHHHH
Confidence 3688888 4455555543 35677767532 34444333221 11335789877662 456544433333
Q ss_pred hcCcCcccccCCcEEEecCC
Q 011517 187 LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~G 206 (484)
+..-....-...+++++-+|
T Consensus 70 l~~~~~~~l~~k~vaifg~g 89 (169)
T PRK09267 70 LPELEEIDFSGKKVALFGLG 89 (169)
T ss_pred HHHHhcCCCCCCEEEEEecC
Confidence 22110001124688888544
No 358
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=32.21 E-value=1.4e+02 Score=28.88 Aligned_cols=53 Identities=23% Similarity=0.158 Sum_probs=32.8
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
.|+.=|-+.. +..+...|+++|+++.++...... ..+.++++||+||+.||-.
T Consensus 2 ~vl~~pG~n~-------~~~~~~al~~aG~~v~~v~~~~~~-----~~~~~l~~~d~liipGG~~ 54 (238)
T cd01740 2 AVLRFPGSNC-------DRDMAYAFELAGFEAEDVWHNDLL-----AGRKDLDDYDGVVLPGGFS 54 (238)
T ss_pred EEEEcCCcCC-------HHHHHHHHHHcCCCEEEEeccCCc-----cccCCHhhCCEEEECCCCC
Confidence 4566564432 135667788899988766543211 1122346899999999953
No 359
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=32.10 E-value=3.4e+02 Score=27.94 Aligned_cols=79 Identities=9% Similarity=0.190 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh--hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.+|+.-.. -++..-...+.+...++..|+++........ ....++++++...+ +.||+++..-.+..++..
T Consensus 136 ~W~~vaiiy~~~~-~~~~~~~~~~~l~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~ 213 (387)
T cd06386 136 HWRSALLVYEDDK-QERNCYFTLEGVHHVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLA 213 (387)
T ss_pred CCeEEEEEEEcCC-CCccceehHHHHHHHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHH
Confidence 4577887764322 1121101135777888999988877655432 36778888887656 778877766666666655
Q ss_pred Hhc
Q 011517 186 LLE 188 (484)
Q Consensus 186 L~~ 188 (484)
+.+
T Consensus 214 A~~ 216 (387)
T cd06386 214 AHR 216 (387)
T ss_pred HHH
Confidence 443
No 360
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.85 E-value=4.5e+02 Score=26.35 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHh
Q 011517 91 SKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (484)
.++.-.+.+++.+... + +|+=..|.+++ ..|...|.+......++.|+.++.+.- ..+.+..+..+++
T Consensus 11 ia~~i~~~lk~~i~~l~~~~~~~P~Laii~vg~----d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~l 86 (284)
T PRK14177 11 LSEKIRNEIRETIEERKTKNKRIPKLATILVGN----NPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKL 86 (284)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeCC----ChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4444555555544332 2 35444555544 456778988889999999999887643 2445556666676
Q ss_pred hc-CCCceEEE
Q 011517 163 DL-SKYDGIVC 172 (484)
Q Consensus 163 ~~-~~~d~IV~ 172 (484)
+. .+.|+|++
T Consensus 87 N~D~~V~GIlv 97 (284)
T PRK14177 87 NLDPNVDGILL 97 (284)
T ss_pred hCCCCCCeEEE
Confidence 53 45678776
No 361
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=31.82 E-value=1.9e+02 Score=30.71 Aligned_cols=50 Identities=12% Similarity=0.029 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
...+.+.|.+.++..-+.+.+-|++.+..|.+. ..+.++|+..|+++..+
T Consensus 158 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~Ga~~------~~~~~il~~lg~~v~~~ 207 (450)
T PRK14314 158 PGRYIVFLKATFPKGLTLKGLKIVLDCANGAAY------KVAPAVFEELGAEVICI 207 (450)
T ss_pred HHHHHHHHHHhhccccCCCCCEEEEECCCchHH------HHHHHHHHHcCCeEEEe
Confidence 455777777766521223468899999877642 24666888888876543
No 362
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.81 E-value=3.6e+02 Score=25.39 Aligned_cols=66 Identities=17% Similarity=0.271 Sum_probs=38.0
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHH-hhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKV-LDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~-~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
.+.++..+++.|+++.+..+.....-.+.+.+ +...++|+||+++.+.. ...+..+... .+|+-.+
T Consensus 23 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~ipvV~~ 89 (270)
T cd06294 23 LRGISAVANENGYDISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEE-------KFPFVVI 89 (270)
T ss_pred HHHHHHHHHHCCCEEEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhc-------CCCEEEE
Confidence 35677888888988776554433222223333 33356999999876543 2344444332 5666555
No 363
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=31.78 E-value=2.9e+02 Score=22.59 Aligned_cols=52 Identities=8% Similarity=0.111 Sum_probs=30.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~ 162 (484)
..++.||.=..+..-.. -|-.+++.+|+..|++|+.+.......+++.+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~C--p~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~ 62 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQC--GFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEY 62 (97)
T ss_pred cCCEEEEEccCCCCCCC--chHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 35677774311110111 25568999999999999887665444444444443
No 364
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=31.64 E-value=1.7e+02 Score=23.16 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=37.7
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+|+....+..... -+..++...|..+|+.+.+.. .......-.+.++..++-.++++|-+
T Consensus 3 ~Ii~~~~~~~~~~-~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 3 VIIPVGKKDEEII-EYAQELANKLRKAGIRVELDD--SDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp EEEESSCSHHHHH-HHHHHHHHHHHHTTSEEEEES--SSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred EEEEeCCCcHHHH-HHHHHHHHHHHHCCCEEEEEC--CCCchhHHHHHHhhcCCeEEEEECch
Confidence 3444444322233 355688999999998887765 33333444556666688888888854
No 365
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=31.52 E-value=3.4e+02 Score=26.21 Aligned_cols=58 Identities=14% Similarity=0.035 Sum_probs=41.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHH------------hhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
.+++.+++ +|-.++|+-.+-..+..++++. -++.+++.|+++-+|--+|+-+-.....
T Consensus 39 RK~~~Ll~-~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~a~~ 108 (223)
T PRK05562 39 IKGKTFLK-KGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKHCDR 108 (223)
T ss_pred HHHHHHHh-CCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 46665555 7788888876665555555431 2346788999999999999988888764
No 366
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=31.22 E-value=71 Score=28.48 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=11.3
Q ss_pred CCCceEEEEcCCCh
Q 011517 165 SKYDGIVCVSGDGI 178 (484)
Q Consensus 165 ~~~d~IV~vGGDGt 178 (484)
..||.|++.||.+.
T Consensus 61 ~~~D~lvvpGG~~~ 74 (165)
T cd03134 61 DDYDALVIPGGTNP 74 (165)
T ss_pred HHCCEEEECCCCCh
Confidence 36899999999753
No 367
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.21 E-value=3.9e+02 Score=25.28 Aligned_cols=68 Identities=19% Similarity=0.205 Sum_probs=44.0
Q ss_pred hHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCC---C-hHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGD---G-ILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGD---G-tl~evingL~~~~~~~~~~~~pigiI 203 (484)
+...++..+++.|+++.+..+... ..-.++.+.+...+.|+|++.+.. - ...+.++.+... ++|+-.+
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~-------~ipvV~i 89 (273)
T cd06292 17 FAEAIEAALAQYGYTVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAER-------GLPVVLV 89 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhC-------CCCEEEE
Confidence 346788888889988877666542 333456677777789999998743 2 123345555443 5676665
No 368
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=31.00 E-value=3.1e+02 Score=28.27 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCC---ceEEEEcCCChHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKY---DGIVCVSGDGILVEV 182 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~---d~IV~vGGDGtl~ev 182 (484)
+|++|+..+.-.+ .+.+.+...|. ++.+.++. ...-..+.++.+.+...+. |.||++|| |++.++
T Consensus 20 ~r~lIVtD~~v~~-----l~~~~l~~~L~--~~~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D~ 91 (346)
T cd08196 20 ENDVFIVDANVAE-----LYRDRLDLPLD--AAPVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQDV 91 (346)
T ss_pred CeEEEEECccHHH-----HHHHHHHHHhc--CCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHHH
Confidence 6788888775432 25567777776 34444433 2233444555555544444 88888887 666666
Q ss_pred HHHH---hcCcCcccccCCcEEEecC
Q 011517 183 VNGL---LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 183 ingL---~~~~~~~~~~~~pigiIP~ 205 (484)
.-.+ +.| .+|+-.||.
T Consensus 92 ak~vA~~~~r-------gi~~i~iPT 110 (346)
T cd08196 92 TTFVASIYMR-------GVSWSFVPT 110 (346)
T ss_pred HHHHHHHHHc-------CCCeEEecc
Confidence 5444 344 567777776
No 369
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=30.82 E-value=2.1e+02 Score=26.91 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=34.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
+...++..+++.|+++.+..+.+.. ...++.+.+...+.|+|++.+++-.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 67 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLP 67 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 3467888888999888776665422 2334556666678999999887644
No 370
>PRK10116 universal stress protein UspC; Provisional
Probab=30.53 E-value=2e+02 Score=24.55 Aligned_cols=66 Identities=15% Similarity=0.292 Sum_probs=34.9
Q ss_pred HHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC--ChHHHHH---HHHhcCcCcccccCCcEEEecC
Q 011517 133 VKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD--GILVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 133 v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD--Gtl~evi---ngL~~~~~~~~~~~~pigiIP~ 205 (484)
++.+....+++..........-+..+.+.+...++|.||+ |-- +.+..+. +.++.. .+.|+-++|.
T Consensus 69 l~~~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~-g~~~~~~~~~~~s~a~~v~~~------~~~pVLvv~~ 139 (142)
T PRK10116 69 LDKLIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVIC-GNHNHSFFSRASCSAKRVIAS------SEVDVLLVPL 139 (142)
T ss_pred HHHHHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEE-cCCcchHHHHHHHHHHHHHhc------CCCCEEEEeC
Confidence 3344445565443222222233455666666668888776 433 3455543 344443 3688888884
No 371
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=30.52 E-value=1.8e+02 Score=27.67 Aligned_cols=65 Identities=20% Similarity=0.301 Sum_probs=36.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCe-EEEEecCChhHH--HHHHHHhhcCCCceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~-~~v~~T~~~~~a--~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
+..+++++ |.++... . .+.+.....|+..|+. +++........+ .++.+.+ .+.|+|++.|||=.
T Consensus 28 ~~~~i~~i--ptA~~~~-~-~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l--~~ad~I~~~GG~~~ 95 (217)
T cd03145 28 AGARIVVI--PAASEEP-A-EVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARL--RDADGIFFTGGDQL 95 (217)
T ss_pred CCCcEEEE--eCCCcCh-h-HHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHH--HhCCEEEEeCCcHH
Confidence 44556544 3333222 2 2335788888888874 455444332221 2333444 46899999999963
No 372
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=30.51 E-value=68 Score=27.62 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=22.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
.++.|...++++.+.|+++|+......
T Consensus 88 ~~~lfqA~~~ee~~~Wi~~I~~~~~~~ 114 (117)
T cd01230 88 REFLFQTSSLKELQSWIERINVVAAAF 114 (117)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 478899999999999999998876543
No 373
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=30.32 E-value=4e+02 Score=23.84 Aligned_cols=103 Identities=18% Similarity=0.258 Sum_probs=57.1
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhc---CCCceEEEEcC------------
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDL---SKYDGIVCVSG------------ 175 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~---~~~d~IV~vGG------------ 175 (484)
+.|+..+-.|-++.-. +-..++.+|+..+++|+.+... +.....|+.+.+.. ...=-.|.++|
T Consensus 2 VvlYttsl~giR~t~~-~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 2 VVLYTTSLRGVRKTFE-DCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred EEEEEcCCcCCCCcCh-hHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 5667777777777654 5578999999999998776554 44444455443321 01112333444
Q ss_pred --CChHHHHHHHHhcCcCccc-ccCCcEEEecCCCchhhhhhc
Q 011517 176 --DGILVEVVNGLLEREDWND-AIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 176 --DGtl~evingL~~~~~~~~-~~~~pigiIP~GSgN~~A~sl 215 (484)
+|.|.+++.++-....... ..=--..++|+++=|+=.+.+
T Consensus 81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~ 123 (147)
T cd03031 81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVF 123 (147)
T ss_pred HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEE
Confidence 5888888877622110000 000134567776655554443
No 374
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=30.25 E-value=4.1e+02 Score=24.99 Aligned_cols=44 Identities=11% Similarity=0.292 Sum_probs=29.9
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
+-++..+++.|+.+.+..+.. + .+..+.+...++|+||+.+.+-
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~--~-~~~~~~l~~~~vdgii~~~~~~ 62 (261)
T cd06272 19 TGINQAISKNGYNMNVSITPS--L-AEAEDLFKENRFDGVIIFGESA 62 (261)
T ss_pred HHHHHHHHHcCCEEEEEeccc--H-HHHHHHHHHcCcCEEEEeCCCC
Confidence 567777888888877776652 2 2344455556899999987653
No 375
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=30.16 E-value=2.9e+02 Score=27.23 Aligned_cols=70 Identities=9% Similarity=0.156 Sum_probs=42.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+.+.|+++-.+. .--.. +.+-++..+++.|+++.+..+.. .....+..+.+...+.|+||+.+.+..
T Consensus 54 ~~~~~Igvi~~~~~~-~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 124 (327)
T PRK10423 54 NQTRTIGMLITASTN-PFYSE-LVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETH 124 (327)
T ss_pred CCCCeEEEEeCCCCC-CcHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 345567777743222 11222 23567778888898877766643 222334555565578999999987754
No 376
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=30.15 E-value=5.9e+02 Score=25.74 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=49.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.++.+-.. -++. +.+.++..|++.|+++.....- ...+....+.++...+.|.|++.+-......++..
T Consensus 139 ~~~kvaiv~~~~~-~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~i~~~~pd~V~~~~~~~~~~~~~~~ 214 (351)
T cd06334 139 KGKKIALVYHDSP-FGKE---PIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKE 214 (351)
T ss_pred CCCeEEEEeCCCc-cchh---hHHHHHHHHHHcCCeeeeeccCCCCcccHHHHHHHHHHcCCCEEEEecccchHHHHHHH
Confidence 3678887765333 2221 2356778899999876543322 22355566666666789999887776667777777
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 215 ~~~~ 218 (351)
T cd06334 215 AKRV 218 (351)
T ss_pred HHHc
Confidence 7554
No 377
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=30.10 E-value=7.1e+02 Score=26.63 Aligned_cols=85 Identities=24% Similarity=0.352 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhh-----------c-CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc--CCeEEEEecCChh--H
Q 011517 91 SKRLWCEKLRDFIDS-----------F-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETTQQL--H 154 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~-----------~-~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a--g~~~~v~~T~~~~--~ 154 (484)
....=.+.+++.|.. . ..|+++.||-.|.|- | + ..+...++.. .+++.+..|.=+| -
T Consensus 105 ~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgA---a---i-rDIl~~~~rR~P~~~viv~pt~VQG~~A 177 (440)
T COG1570 105 ALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGA---A---L-RDILHTLSRRFPSVEVIVYPTLVQGEGA 177 (440)
T ss_pred HHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchH---H---H-HHHHHHHHhhCCCCeEEEEeccccCCCc
Confidence 444455667776641 1 357899999887643 2 2 2344444443 2566666665444 3
Q ss_pred HHHHHHHhh----cCCCceEEEEcCCChHHHH
Q 011517 155 AKEIVKVLD----LSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 155 a~~l~~~~~----~~~~d~IV~vGGDGtl~ev 182 (484)
+.++++.+. ...+|+||++=|=|.+=+.
T Consensus 178 ~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDL 209 (440)
T COG1570 178 AEEIVEAIERANQRGDVDVLIVARGGGSIEDL 209 (440)
T ss_pred HHHHHHHHHHhhccCCCCEEEEecCcchHHHH
Confidence 556766553 2459999999999998653
No 378
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=29.99 E-value=1.7e+02 Score=25.20 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=36.5
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH----HHHHHhcCcCcccccCCcEEEecC
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE----VVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e----vingL~~~~~~~~~~~~pigiIP~ 205 (484)
.++.+++..|+++.........-+.++++.++..+.|.||+ |=-|.+.. +.+.++.. .++|+-++|.
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~-Gs~~~~~~~lgSva~~v~~~------a~~pVLvv~~ 139 (144)
T PRK15118 69 ALTELSTNAGYPITETLSGSGDLGQVLVDAIKKYDMDLVVC-GHHQDFWSKLMSSARQLINT------VHVDMLIVPL 139 (144)
T ss_pred HHHHHHHhCCCCceEEEEEecCHHHHHHHHHHHhCCCEEEE-eCcccHHHHHHHHHHHHHhh------CCCCEEEecC
Confidence 44555566676643222222233456666666668888776 33354322 33333333 3688888885
No 379
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.73 E-value=4.3e+02 Score=24.93 Aligned_cols=66 Identities=15% Similarity=0.186 Sum_probs=41.6
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
+-+...++..|+++.+..+.. .....++.+.+...++|+||+.+-+-. .+.+..+... ++|+-++=
T Consensus 19 ~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~-~~~~~~~~~~-------~~pvV~i~ 85 (269)
T cd06293 19 DAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPD-DGALAKLINS-------YGNIVLVD 85 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-HHHHHHHHhc-------CCCEEEEC
Confidence 577788888898887776653 333445666776678999999874422 2333333332 45666653
No 380
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=29.67 E-value=3.3e+02 Score=27.17 Aligned_cols=79 Identities=19% Similarity=0.084 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
.-+++.+|+.....-++. ..+.++..+++.|+++..... ....+...++.++...+.|.|++.+.-+-...+++.
T Consensus 135 ~~~~v~~l~~~~~~~g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i~~~~~d~vi~~~~~~~~~~~~~~ 211 (344)
T cd06348 135 GIKRVAVFYAQDDAFSVS---ETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAVLNSKPDLIVISALAADGGNLVRQ 211 (344)
T ss_pred CCeEEEEEEeCCchHHHH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEECCcchhHHHHHHH
Confidence 447888887432211222 235788889999987653222 233455667777777789988877766666677777
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 212 ~~~~ 215 (344)
T cd06348 212 LREL 215 (344)
T ss_pred HHHc
Confidence 7654
No 381
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=29.64 E-value=3.5e+02 Score=26.31 Aligned_cols=74 Identities=24% Similarity=0.360 Sum_probs=47.9
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHH---HHhhcCCCc-eEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIV---KVLDLSKYD-GIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~---~~~~~~~~d-~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
+.++..-.++..|+++.-..--...-..++. +.+.+.+.| .||++|=||++--|++||.+ +|+--+|
T Consensus 132 vAeEa~~tae~lG~ev~~~~DvGVAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaLPsvvagLvD---------~PVIavP 202 (254)
T COG1691 132 VAEEAAVTAEELGVEVQKVYDVGVAGIHRLLSALKRLKIEDADVLIVVAGMEGALPSVVAGLVD---------VPVIAVP 202 (254)
T ss_pred hHHHHHHHHHHhCceEEEEEeeccchHHhhhhHHHHHHhhCCCeEEEEcccccchHHHHHhccC---------CCeEecc
Confidence 4567788888889876544332222223333 333344555 57777889999999999986 4776778
Q ss_pred CCCchhh
Q 011517 205 AGTGNGM 211 (484)
Q Consensus 205 ~GSgN~~ 211 (484)
.-+|=++
T Consensus 203 TsVGYG~ 209 (254)
T COG1691 203 TSVGYGA 209 (254)
T ss_pred cccccCc
Confidence 7655443
No 382
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=29.54 E-value=1.9e+02 Score=25.79 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=33.9
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++......|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~Egelid~I~~a~-~~~dgiII 71 (140)
T cd00466 29 IEALLRELAAELGVEVEFFQSNHEGELIDWIHEAR-DGADGIII 71 (140)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhh-ccCcEEEE
Confidence 34556666666799999999999999999888874 46888885
No 383
>cd05803 PGM_like4 This PGM-like (phosphoglucomutase-like) domain is located C-terminal to a mannose-1-phosphate guanyltransferase domain in a protein of unknown function that is found in both prokaryotes and eukaryotes. This domain belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=29.52 E-value=2e+02 Score=30.55 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhhhh-cC--CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-----------hhHHHH
Q 011517 92 KRLWCEKLRDFIDS-FG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-----------QLHAKE 157 (484)
Q Consensus 92 ~~~w~~~l~~~~~~-~~--~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-----------~~~a~~ 157 (484)
...|.+.|.+.++. .. +.+.+.|+++|..|.+. ..+.++|+..|+++..+..+. +....+
T Consensus 151 ~~~Y~~~l~~~~~~~~~~~~~~~lkVvvd~~~G~~~------~~~~~ll~~lg~~v~~~~~~~d~~F~~~p~p~~~~l~~ 224 (445)
T cd05803 151 IAEHIDKVLALVDVDVIKIRERNFKVAVDSVNGAGG------LLIPRLLEKLGCEVIVLNCEPTGLFPHTPEPLPENLTQ 224 (445)
T ss_pred HHHHHHHHHhhcccchhhhccCCCEEEEECCCCcHH------HHHHHHHHHcCCEEEEeCCcCCCCCCCCCCCChHHHHH
Confidence 45577777665431 11 24578999999988754 246678888898864432111 122334
Q ss_pred HHHHhhcCCCceEEEEcCCC
Q 011517 158 IVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDG 177 (484)
+.+.+...+.|..++.-|||
T Consensus 225 l~~~v~~~~adlgi~~D~Dg 244 (445)
T cd05803 225 LCAAVKESGADVGFAVDPDA 244 (445)
T ss_pred HHHHHHhcCCCEEEeeCCCC
Confidence 44444445677777777777
No 384
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=29.42 E-value=3.1e+02 Score=27.78 Aligned_cols=65 Identities=18% Similarity=0.225 Sum_probs=47.9
Q ss_pred hhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+.+....+++-|+++..+|++.-. +. ++++.+++++|.++.++.....+-++= .. . +.|..|.+|
T Consensus 206 I~ka~~A~~vGIlvgTl~~q~~~~-~~-~~l~~ll~~~gkk~y~i~~~~in~~kL--~n--f-~iD~fV~~a 270 (308)
T TIGR03682 206 ISKALDAKKFGILVSTKKGQRRPE-LA-EELKKLLEELGKEALLILLDNISPDQL--RN--L-DFDAYVNTA 270 (308)
T ss_pred HHHHhhCCeEEEEEEccCcCCCHH-HH-HHHHHHHHHcCCeEEEEEeCCCCHHHH--hc--C-CcCEEEEcc
Confidence 444556789999999999998754 44 689999999999998888877765431 22 2 477766544
No 385
>cd05799 PGM2 This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/ph
Probab=29.26 E-value=2.5e+02 Score=30.21 Aligned_cols=48 Identities=19% Similarity=0.223 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhhhhcC--CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCe
Q 011517 90 DSKRLWCEKLRDFIDSFG--RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ 143 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~--~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~ 143 (484)
+....+.+.|.+.+.... +.+.+-|++++..|.+. ..+..+|+..|++
T Consensus 163 ~~~~~Y~~~l~~~i~~~~~~~~~~~kVvvD~~~G~~~------~~~~~il~~LG~~ 212 (487)
T cd05799 163 EIDDAYLEAVKKLLVNPELNEGKDLKIVYTPLHGVGG------KFVPRALKEAGFT 212 (487)
T ss_pred HHHHHHHHHHHhhhcccccccCCCCcEEEeCCCCccH------HHHHHHHHHcCCC
Confidence 345667777777765321 44578999999988754 3567788888887
No 386
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=29.24 E-value=97 Score=24.87 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=26.7
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
..++..|+..|+++.-..+.. +...+|++|+-|-|-
T Consensus 11 s~v~~~L~~~GyeVv~l~~~~-----------~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 11 SNVKEALREKGYEVVDLENEQ-----------DLQNVDAIVVTGQDT 46 (80)
T ss_pred hHHHHHHHHCCCEEEecCCcc-----------ccCCcCEEEEECCCc
Confidence 578999999998765544222 456899999988774
No 387
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=29.22 E-value=2.3e+02 Score=30.10 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVK 160 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~ 160 (484)
....|.+.|.+.++ .+.+.+-|++.+..|.+. ..+..+|+..|+++..+-.+. +.+..++.+
T Consensus 157 ~~~~Y~~~l~~~i~--~~~~~~kVvvD~~nG~~~------~~~~~ll~~lG~~v~~in~~~dg~~~~~~~~~~~l~~l~~ 228 (448)
T PRK14318 157 ATDRYLRHLLGALP--TRLDGLKVVVDCAHGAAS------GVAPEAYRAAGADVIAINADPDGLNINDGCGSTHLEQLQA 228 (448)
T ss_pred HHHHHHHHHHHHhc--cccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEeccCCCCCCCCCCCCCCCHHHHHH
Confidence 34567777766664 233578899999988654 245667888888765442220 123333333
Q ss_pred HhhcCCCceEEEEcCCC
Q 011517 161 VLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 161 ~~~~~~~d~IV~vGGDG 177 (484)
.....++|.-++.-|||
T Consensus 229 ~v~~~~adlGia~DgD~ 245 (448)
T PRK14318 229 AVVAHGADLGLAHDGDA 245 (448)
T ss_pred HHHhcCCCEEEEecCCC
Confidence 33334556666666665
No 388
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=29.19 E-value=5e+02 Score=24.59 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=47.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+..+++.++..+.... +...+ +.++..+++.|+++.........+..+.++++. .+.|+|+ +.+|.+...++..+
T Consensus 129 ~g~~~i~~l~~~~~~~--~~~r~-~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~dai~-~~~d~~a~~~~~~~ 203 (281)
T cd06325 129 PDAKTVGVLYNPSEAN--SVVQV-KELKKAAAKLGIEVVEATVSSSNDVQQAAQSLA-GKVDAIY-VPTDNTVASAMEAV 203 (281)
T ss_pred CCCcEEEEEeCCCCcc--HHHHH-HHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhc-ccCCEEE-EcCchhHHhHHHHH
Confidence 4567888887665422 22223 467777888888754422233445556666654 3467655 57888888888877
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 204 ~~~ 206 (281)
T cd06325 204 VKV 206 (281)
T ss_pred HHH
Confidence 654
No 389
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=29.17 E-value=1.3e+02 Score=30.49 Aligned_cols=72 Identities=19% Similarity=0.255 Sum_probs=45.3
Q ss_pred EEEEEEcCCCCCcchhh----chHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASK----IFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~----~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+-+|++||.++++.+++ .| .++...|.+.+ +.|+.+.+. +-.+.++++.. .+...+.+-|-.+|-|++.-+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~-~~l~~~l~~~~--~~Vvl~g~~-~e~e~~~~i~~-~~~~~~~l~~k~sL~e~~~li 249 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHY-AELAELLIAKG--YQVVLFGGP-DEEERAEEIAK-GLPNAVILAGKTSLEELAALI 249 (334)
T ss_pred CCeEEEeccccccccCCCCHHHH-HHHHHHHHHCC--CEEEEecCh-HHHHHHHHHHH-hcCCccccCCCCCHHHHHHHH
Confidence 46899999955444432 46 36777777777 666677766 55566666652 333333267777888877655
Q ss_pred h
Q 011517 187 L 187 (484)
Q Consensus 187 ~ 187 (484)
.
T Consensus 250 ~ 250 (334)
T COG0859 250 A 250 (334)
T ss_pred h
Confidence 3
No 390
>PRK08284 precorrin 6A synthase; Provisional
Probab=29.08 E-value=95 Score=30.51 Aligned_cols=51 Identities=22% Similarity=0.190 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCC-chhhhhhc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGT-GNGMIKSL 215 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GS-gN~~A~sl 215 (484)
++-+++++++||-++......++..-.......+++-+||+=| .++.|..+
T Consensus 102 ~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~vevVPGISS~~aaaA~l 153 (253)
T PRK08284 102 DGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFDYEVIPGITSVQALAARH 153 (253)
T ss_pred CCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCcEEEECChhHHHHHHHHc
Confidence 4568999999999888544444332110001257899999944 45555544
No 391
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=29.07 E-value=1.4e+02 Score=27.79 Aligned_cols=48 Identities=13% Similarity=0.106 Sum_probs=33.9
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
|-..+...|++.|+.++++..... ...+ +...++|+||+.||.|..++
T Consensus 11 ft~~~~~~l~~~g~~~~~~~~~~~-~~~~----~~~~~~~~iilsgGp~~~~~ 58 (193)
T PRK08857 11 FTYNLYQYFCELGAQVKVVRNDEI-DIDG----IEALNPTHLVISPGPCTPNE 58 (193)
T ss_pred cHHHHHHHHHHCCCcEEEEECCCC-CHHH----HhhCCCCEEEEeCCCCChHH
Confidence 445688889999999888765432 2222 22235899999999998875
No 392
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=28.91 E-value=44 Score=29.50 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=30.7
Q ss_pred HHhhcCCCceEEEEcCCChHH------HHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 160 KVLDLSKYDGIVCVSGDGILV------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGtl~------evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.+++...||+|++.||.|... +.+..+++... ...-+||.|=.|. ..++..
T Consensus 31 ~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~---~~~k~iaaIC~g~-~~L~~~ 87 (147)
T PF01965_consen 31 DEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFY---EAGKPIAAICHGP-AVLAAA 87 (147)
T ss_dssp GGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHH---HTT-EEEEETTCH-HHHHHT
T ss_pred HHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHH---HcCCeEEecCCCc-chhhcc
Confidence 345556799999999999432 23333333211 1267999998888 666654
No 393
>PRK09273 hypothetical protein; Provisional
Probab=28.62 E-value=1.6e+02 Score=28.10 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=22.2
Q ss_pred EEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 115 iiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
++|-.|-..|-.-++ +.++..|+..|+++.-+
T Consensus 5 li~e~sqa~kn~~i~-~~L~~~L~~~G~eV~D~ 36 (211)
T PRK09273 5 LINENSQAAKNAIIY-EALKKVADPKGHEVFNY 36 (211)
T ss_pred eecccchhhhhHHHH-HHHHHHHHHCCCEEEEe
Confidence 456666655544466 68999999999876443
No 394
>PRK05948 precorrin-2 methyltransferase; Provisional
Probab=28.55 E-value=2.9e+02 Score=26.84 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCC-Cchhhhhhc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAG-TGNGMIKSL 215 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~G-SgN~~A~sl 215 (484)
.+-+.+++.+||=++.-...-++..-.. ....+++=+||+= |.++.|..+
T Consensus 91 ~g~~v~~l~~GDp~~ys~~~~l~~~l~~-~~~~~~veivPGIss~~a~aa~~ 141 (238)
T PRK05948 91 QGEDVAFACEGDVSFYSTFTYLAQTLQE-LYPQVAIQTIPGVCSPLAAAAAL 141 (238)
T ss_pred cCCeEEEEeCCChHHHHHHHHHHHHHHh-cCCCCCEEEECChhHHHHHHHHh
Confidence 4567999999997776555444332100 0125788899984 445555544
No 395
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=28.55 E-value=5.6e+02 Score=25.11 Aligned_cols=77 Identities=10% Similarity=-0.007 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.+|..- ..-++. ..+.++..+++.|+++.-. ......+....+.++...+.|.|++++.......++..+
T Consensus 137 ~~~vail~~~-~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~~ 212 (312)
T cd06346 137 YKSVATTYIN-NDYGVG---LADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAAAAGGPDALVVIGYPETGSGILRSA 212 (312)
T ss_pred CCeEEEEEcc-CchhhH---HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEecccchHHHHHHHH
Confidence 5788877643 222222 2357778888899876432 222344556677777667899998887655566667766
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 213 ~~~ 215 (312)
T cd06346 213 YEQ 215 (312)
T ss_pred HHc
Confidence 543
No 396
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=28.52 E-value=5.8e+02 Score=25.67 Aligned_cols=100 Identities=10% Similarity=-0.000 Sum_probs=54.3
Q ss_pred HHHHHHHHhhhh-----cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh---hHHHHHHHHhhcC
Q 011517 94 LWCEKLRDFIDS-----FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ---LHAKEIVKVLDLS 165 (484)
Q Consensus 94 ~w~~~l~~~~~~-----~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~---~~a~~l~~~~~~~ 165 (484)
.|.-+-+..+.. ..+.+++.+++ |.....--.. +.+-++..+++.|+++.+..+... ..-.+..+.+...
T Consensus 26 ~~~~~~~~~LgY~Pn~~Ar~t~~Igvv~-p~~~~~f~~~-~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~ 103 (343)
T PRK10936 26 TWHLAQRTSLQYSPLLKAKKAWKLCALY-PHLKDSYWLS-VNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAW 103 (343)
T ss_pred HHHHHhhcccccccccccCCCeEEEEEe-cCCCchHHHH-HHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHh
Confidence 465544444432 13345565555 5433222122 234677778888988877766422 2223445555557
Q ss_pred CCceEEEEcCCChH-HHHHHHHhcCcCcccccCCcEEEe
Q 011517 166 KYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 166 ~~d~IV~vGGDGtl-~evingL~~~~~~~~~~~~pigiI 203 (484)
++|+||+++.|..- .+.+ .+.+ .++|+-.+
T Consensus 104 ~vdgIIl~~~~~~~~~~~l-~~~~-------~giPvV~~ 134 (343)
T PRK10936 104 GADAILLGAVTPDGLNPDL-ELQA-------ANIPVIAL 134 (343)
T ss_pred CCCEEEEeCCChHHhHHHH-HHHH-------CCCCEEEe
Confidence 89999999877543 2344 3322 25777654
No 397
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=28.20 E-value=2.3e+02 Score=30.12 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
...|.+.|.+.++..-+.+.+.|++++..|.+. ..+.++|+..|+++..+
T Consensus 152 ~~~Y~~~l~~~id~~i~~~~~kVvvD~~~G~~~------~~~~~ll~~lG~~v~~~ 201 (443)
T PRK10887 152 AGRYIEFCKSTFPNELSLRGLKIVVDCANGATY------HIAPNVFRELGAEVIAI 201 (443)
T ss_pred HHHHHHHHHHhcCcccccCCCEEEEECCCchHH------HHHHHHHHHhCCeEEEE
Confidence 455777776665421134578899999888654 35677888888876543
No 398
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=28.17 E-value=2e+02 Score=29.60 Aligned_cols=64 Identities=20% Similarity=0.305 Sum_probs=36.3
Q ss_pred hcCCCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhc---CCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 105 SFGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDA---NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 105 ~~~~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~a---g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
...+||=...=+|||+|.+-- .+. .+.+.|..+++ |+++ ..+--|-.+.......+||+||++=
T Consensus 199 gi~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~G~~v-----~GP~paDt~F~~~~~~~~D~vvaMY 267 (332)
T PRK00232 199 GIAEPRIAVCGLNPHAGEGGHFGREE-IDIIIPALEELRAEGINL-----VGPLPADTLFQPAYLGDADAVLAMY 267 (332)
T ss_pred CCCCCcEEEEeeCCCCCCCCCCCHHH-HHHHHHHHHHHHhCCCCc-----CCCCCchhhccccccCCCCEEEECc
Confidence 445676555669999997532 211 23556666553 5543 2333333344444457899999753
No 399
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=28.09 E-value=3.6e+02 Score=22.61 Aligned_cols=89 Identities=12% Similarity=0.005 Sum_probs=48.0
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
|....|..|..-...|+++........=.+|.+|...-.... -.+.++..+++.++.+.+..-. ..++++.+.
T Consensus 30 F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~D~----~~~~~~~~~ 102 (126)
T cd03012 30 FWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFER---DLANVKSAVLRYGITYPVANDN----DYATWRAYG 102 (126)
T ss_pred EECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCcccccc---CHHHHHHHHHHcCCCCCEEECC----chHHHHHhC
Confidence 344445555555556666655544322223444431100111 1247777888888887765422 234556665
Q ss_pred cCCCceEEEEcCCChH
Q 011517 164 LSKYDGIVCVSGDGIL 179 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl 179 (484)
....-..+++.-||.+
T Consensus 103 v~~~P~~~vid~~G~v 118 (126)
T cd03012 103 NQYWPALYLIDPTGNV 118 (126)
T ss_pred CCcCCeEEEECCCCcE
Confidence 5566677888888864
No 400
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=28.04 E-value=4.6e+02 Score=23.82 Aligned_cols=97 Identities=21% Similarity=0.221 Sum_probs=51.6
Q ss_pred eCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh---HHHHHHH
Q 011517 84 FEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---HAKEIVK 160 (484)
Q Consensus 84 ~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~---~a~~l~~ 160 (484)
+...+.+......+.+.+. . .+++.+|..+.. . .. ....+..+..+++.++++......... ....+.+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~----~-~~~i~~i~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (269)
T cd01391 104 VGPDNEQAGEAAAEYLAEK----G-WKRVALIYGDDG-A-YG-RERLEGFKAALKKAGIEVVAIEYGDLDTEKGFQALLQ 175 (269)
T ss_pred EcCCcHHHHHHHHHHHHHh----C-CceEEEEecCCc-c-hh-hHHHHHHHHHHHhcCcEEEeccccCCCccccHHHHHH
Confidence 4444444444444443333 2 678888877654 1 11 223356677777777654322221111 2233444
Q ss_pred HhhcC-CCceEEEEcCCChHHHHHHHHhcC
Q 011517 161 VLDLS-KYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 161 ~~~~~-~~d~IV~vGGDGtl~evingL~~~ 189 (484)
.+... +.++|+++ +|.....++..+.+.
T Consensus 176 ~l~~~~~~~~i~~~-~~~~a~~~~~~~~~~ 204 (269)
T cd01391 176 LLKAAPKPDAIFAC-NDEMAAGALKAAREA 204 (269)
T ss_pred HHhcCCCCCEEEEc-CchHHHHHHHHHHHc
Confidence 44433 46666665 458888888888765
No 401
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.93 E-value=5.9e+02 Score=25.47 Aligned_cols=78 Identities=18% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhh
Q 011517 91 SKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~---~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~ 163 (484)
.|+.-.+.+++.+... + +|+=..|.++ ...|...|.+......++.|++++.+.-. .+.+..+..++++
T Consensus 9 ~a~~i~~~l~~~v~~l~~~g~~P~Laii~vg----~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN 84 (282)
T PRK14166 9 LSAKIKEELKEKNQFLKSKGIESCLAVILVG----DNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLN 84 (282)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEEeC----CCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444444322 2 4433345554 44677789888999999999998776443 3445556666665
Q ss_pred c-CCCceEEE
Q 011517 164 L-SKYDGIVC 172 (484)
Q Consensus 164 ~-~~~d~IV~ 172 (484)
. ...|+|++
T Consensus 85 ~D~~V~GIiv 94 (282)
T PRK14166 85 HDDSVHGILV 94 (282)
T ss_pred CCCCCCEEEE
Confidence 3 35678776
No 402
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=27.86 E-value=2.9e+02 Score=28.08 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=42.7
Q ss_pred CCCcEEEEEE--c-CCCCCcchhhchHHhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 107 GRPKRLYIFV--N-PFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 107 ~~~~r~lvii--N-P~sG~~~a~~~~~~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
-++.|+.||. | +..|+- ...+...++..|++.|+++.. +.........+.++++...++|.||+-||=|
T Consensus 157 ~r~~rv~II~TG~Ev~~G~i--~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 157 FRPLRVGLIVTGSEVYGGRI--EDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred cCCCEEEEEEcCCcCCCCcE--EEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 3566777776 3 333332 223445788889999987643 3445555555555555433589999999866
No 403
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=27.59 E-value=1.5e+02 Score=28.21 Aligned_cols=75 Identities=16% Similarity=0.199 Sum_probs=39.6
Q ss_pred cEEEEEEcCCCCCcchh----hchHHhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIAS----KIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~----~~~~~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+-+|++||.++. ..+ +.| .++...|...+ +.++.+..+.+ ..++++++.....+.++..-|.-+|.|++-
T Consensus 104 ~~~~i~i~~~a~~-~~k~wp~e~~-~~l~~~l~~~~--~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 104 DKPYIGINPGASW-PSKRWPAEKW-AELIERLKERG--YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TSSEEEEE---SS-GGGS--HHHH-HHHHHHHCCCT---EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred cCCeEEEeecCCC-ccccCCHHHH-HHHHHHHHhhC--ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 4467888999877 222 124 35666666666 56666666666 566666654321222555667778999775
Q ss_pred HHhc
Q 011517 185 GLLE 188 (484)
Q Consensus 185 gL~~ 188 (484)
-+..
T Consensus 180 li~~ 183 (247)
T PF01075_consen 180 LISR 183 (247)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 5543
No 404
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=27.54 E-value=7.6e+02 Score=26.19 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=42.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcC--CeEEEEecCChh--HHHHHHHHhh---c-CCCceEEEEcCCChH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN--IQFTVQETTQQL--HAKEIVKVLD---L-SKYDGIVCVSGDGIL 179 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag--~~~~v~~T~~~~--~a~~l~~~~~---~-~~~d~IV~vGGDGtl 179 (484)
-|+|+.||-.|.+- | + ..+...+.... +++.++.+.=+| -+.++++.+. . ..+|+||++=|=|.+
T Consensus 128 ~p~~i~vits~~~a---a---~-~D~~~~~~~r~p~~~~~~~~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~ 200 (432)
T TIGR00237 128 FPKRVGVITSQTGA---A---L-ADILHILKRRDPSLKVVIYPTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSL 200 (432)
T ss_pred CCCEEEEEeCCccH---H---H-HHHHHHHHhhCCCceEEEecccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCH
Confidence 47899999877533 3 3 24444555443 466666554444 3456666553 2 348999999999998
Q ss_pred HHH
Q 011517 180 VEV 182 (484)
Q Consensus 180 ~ev 182 (484)
-+.
T Consensus 201 eDL 203 (432)
T TIGR00237 201 EDL 203 (432)
T ss_pred HHh
Confidence 753
No 405
>COG1619 LdcA Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms]
Probab=27.51 E-value=1.6e+02 Score=29.93 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=43.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC----------ChhHHHHHHHHhhcCCCceEEE-EcCCCh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGDGI 178 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~----------~~~~a~~l~~~~~~~~~d~IV~-vGGDGt 178 (484)
....=||-|.|+-. +.+.. ++....|+..|+++..-..- ....|.++.+.+...+.+.|.| .||+|+
T Consensus 10 gd~I~iIaPSs~~~-~~~~~-~~a~~~L~~~G~~v~~~~~i~~~~~~~a~s~~~R~~dL~~af~d~~vk~Il~~rGGygs 87 (313)
T COG1619 10 GDEIGIIAPSSGAT-ATDAL-KRAIQRLENLGFEVVFGEHILRRDQYFAGSDEERAEDLMSAFSDPDVKAILCVRGGYGS 87 (313)
T ss_pred CCEEEEEecCcccc-hHHHH-HHHHHHHHHcCCEEEechhhhhccccccCCHHHHHHHHHHHhcCCCCeEEEEcccCCCh
Confidence 34566788988877 44444 57888899999877553221 1233455555555456676665 599997
No 406
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=27.44 E-value=2e+02 Score=28.91 Aligned_cols=72 Identities=21% Similarity=0.155 Sum_probs=43.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
..-+.|+..|....++..+.....++...+++|+.+. .....+. .++.+.+..-++|.+|++|=.-.+.+-+
T Consensus 24 ~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~--~~~~~~~-~~~~~~l~~~~~Dliv~~~~~~iip~~i 95 (309)
T PRK00005 24 HEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVL--QPEKLRD-PEFLAELAALNADVIVVVAYGQILPKAV 95 (309)
T ss_pred CcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEE--CcCCCCC-HHHHHHHHhcCcCEEEEehhhcccCHHH
Confidence 3446677678665444444444568888888998763 2333222 2334445445899999998766665543
No 407
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=27.15 E-value=3.1e+02 Score=29.82 Aligned_cols=66 Identities=12% Similarity=0.160 Sum_probs=49.4
Q ss_pred hhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 103 IDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+.+....+.+-||+|-.+|++.=. +. ++++.+++++|.++-++.....+-++= ++....|..|.+|
T Consensus 275 I~kA~~A~~~GIlVgTL~~q~~~~-ii-~~l~~li~~~GkK~yl~~vgkinpaKL----aNF~eID~fV~va 340 (496)
T TIGR00272 275 VHVARDAGCIGIVVGTLGVRNTRE-TI-NELRKMIKTAGKKHYLFVVGKPNPAKL----ANFEDIDIFVLLG 340 (496)
T ss_pred HHHHhcCCEEEEEEecCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHHH----hCCCCCCEEEEcc
Confidence 445556788999999999987643 44 699999999999998888888876532 2333678777654
No 408
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.05 E-value=1.9e+02 Score=30.00 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHhhhh---------cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHH
Q 011517 87 LSEDSKRLWCEKLRDFIDS---------FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (484)
Q Consensus 87 ~~~~~~~~w~~~l~~~~~~---------~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~ 157 (484)
.+.+....|...+...+.. .+.+.++..|.|.++|-||..- .-.++-.|...|..+-++....++.+..
T Consensus 72 yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~KGGvGKTT~--a~nLA~~La~~G~rVLlID~DpQ~~ls~ 149 (387)
T TIGR03453 72 YTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFKGGSGKTTT--AAHLAQYLALRGYRVLAIDLDPQASLSA 149 (387)
T ss_pred eCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccCCCcCHHHH--HHHHHHHHHhcCCCEEEEecCCCCCHHH
Confidence 4556666666555432111 1345589999999999999763 3467888999999998888888776554
Q ss_pred H
Q 011517 158 I 158 (484)
Q Consensus 158 l 158 (484)
.
T Consensus 150 ~ 150 (387)
T TIGR03453 150 L 150 (387)
T ss_pred H
Confidence 3
No 409
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=27.04 E-value=2.2e+02 Score=25.39 Aligned_cols=43 Identities=12% Similarity=0.347 Sum_probs=33.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++......|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 29 i~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~-~~~dgiII 71 (141)
T TIGR01088 29 IVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAE-GQYDGIII 71 (141)
T ss_pred HHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcc-ccCCEEEE
Confidence 34566666666789999999999999988888874 45888875
No 410
>PRK09492 treR trehalose repressor; Provisional
Probab=26.95 E-value=2.4e+02 Score=27.61 Aligned_cols=78 Identities=9% Similarity=0.092 Sum_probs=0.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
+++.+|-.+.+....+.... +-.+..++++|+++........ ..+.+.++++...++|+|+|.. |-+-..+++.|.+
T Consensus 176 ~~I~~i~~~~~~~~~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~~~-D~~A~g~~~al~~ 253 (315)
T PRK09492 176 RHISYLGVDHSDVTTGKRRH-QAYLAFCKQHKLTPVAALGGLSMQSGYELVAKVLTPETTALVCAT-DTLALGASKYLQE 253 (315)
T ss_pred CeEEEEcCCcccchhHHHHH-HHHHHHHHHcCCCceeecCCCCchHHHHHHHHHhhcCCCEEEEcC-cHHHHHHHHHHHH
Q ss_pred C
Q 011517 189 R 189 (484)
Q Consensus 189 ~ 189 (484)
+
T Consensus 254 ~ 254 (315)
T PRK09492 254 Q 254 (315)
T ss_pred c
No 411
>PRK14320 glmM phosphoglucosamine mutase; Provisional
Probab=26.92 E-value=2.9e+02 Score=29.30 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHH
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKV 161 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~ 161 (484)
...+.+.|.+.+... +..+..|++++..|.+. ..+.++|+..|+++..+..+.. .+..++.+.
T Consensus 154 ~~~Y~~~l~~~~~~~-~~~~~kVvvD~~nG~~~------~~~~~ll~~lg~~v~~i~~~~dg~~~~~~~~~~~l~~l~~~ 226 (443)
T PRK14320 154 IDEYIESIHSRFAKF-VNYKGKVVVDCAHGAAS------HNFEALLDKFGINYVSIASNPDGLNINVGCGATCVSNIKKA 226 (443)
T ss_pred HHHHHHHHHHHHHhh-ccCCCEEEEECCCchHH------HHHHHHHHHcCCcEEEECCcCCCCCCCCCCchHhHHHHHHH
Confidence 345666665554311 22235899999888653 3567788888887655432211 222233333
Q ss_pred hhcCCCceEEEEcCCC
Q 011517 162 LDLSKYDGIVCVSGDG 177 (484)
Q Consensus 162 ~~~~~~d~IV~vGGDG 177 (484)
....+.|..++.-|||
T Consensus 227 v~~~~adlGia~DgDa 242 (443)
T PRK14320 227 VKEQKADLGISLDGDA 242 (443)
T ss_pred HHHcCCCEEEEECCCC
Confidence 3334566666666665
No 412
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=26.71 E-value=2.2e+02 Score=29.18 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=35.6
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhc---CCeEEEEecCChhHHHHHHHHhhcCCCceEEEE
Q 011517 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDA---NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~a---g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~v 173 (484)
.+||=...=+|||+|.+-- .+. .+.+.|.++++ |+++ ..+--|-.+.......+||+||++
T Consensus 201 ~~PrIaV~GLNPHAGE~G~~G~EE-~~iI~PAI~~~~~~g~~v-----~GP~paDt~F~~~~~~~~D~vvaM 266 (332)
T PRK03743 201 KNPKIAVAGLNPHSGEHGLFGDEE-VDEIIPAVEAAQEMGINV-----EGPVPADSVFHLALQGRYDAVLSL 266 (332)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCcc-----cCCCCchhhcccccccCCCEEEEc
Confidence 4566555569999997532 221 13567766664 4433 234444444444445689999975
No 413
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=26.64 E-value=2.2e+02 Score=29.11 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=35.4
Q ss_pred CCCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhc---CCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 107 GRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDA---NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~a---g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
.+||=...=+|||+|.+-. .+. .+.+.|.++++ |+++ . .+--|-.+.......+||+||++=
T Consensus 200 ~~PrIaV~gLNPHAGE~G~~G~EE-~~iI~PAi~~~~~~G~~v--~---GP~paDt~F~~~~~~~~D~vvaMY 266 (326)
T PRK03371 200 VKPRIAVAGVNPHAGENGLFGDEE-IRIVTPAIEAMRAKGMDV--Y---GPCPPDTVFLQAYEGQYDMVVAMY 266 (326)
T ss_pred CCCCEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHHCCCcc--c---CCCCchhhcccccccCCCEEEEcc
Confidence 4665555669999997532 221 24567666654 5543 2 333333333444446899999853
No 414
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=26.58 E-value=67 Score=26.44 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=21.5
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
.+.+.|...++++.+.|+++|+..+
T Consensus 74 ~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 74 HRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 3568899999999999999998765
No 415
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=26.52 E-value=1.6e+02 Score=25.82 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=38.2
Q ss_pred HhHHHHHHhcCCeEE--EEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~~~ 189 (484)
..++.+|++.|+++. .+.........+.+++.. ++.|.||+.||=|. ..|++..+..+
T Consensus 20 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~-~~~D~VittGG~g~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 20 PFLAALLEELGIEVIRYGIVPDDPDAIKEALRRAL-DRADLVITTGGTGPGPDDVTPEALAEAGGR 84 (144)
T ss_dssp HHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHH-HTTSEEEEESSSSSSTTCHHHHHHHHHSSE
T ss_pred HHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhh-ccCCEEEEcCCcCcccCCcccHHHHHhcCc
Confidence 368888999998764 244455555555554432 46699999998763 55666666553
No 416
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=26.43 E-value=3.7e+02 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.101 Sum_probs=32.8
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHH-hcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLE-DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~-~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
|+.|+.+|-+-. +..+...|+ .+|+++..+.... .+++++|+||+.||-+
T Consensus 2 ~v~Vl~~~G~n~-------~~d~~~a~~~~~G~~~~~v~~~~----------~~l~~~D~lvipGG~~ 52 (219)
T PRK03619 2 KVAVIVFPGSNC-------DRDMARALRDLLGAEPEYVWHKE----------TDLDGVDAVVLPGGFS 52 (219)
T ss_pred EEEEEecCCcCh-------HHHHHHHHHhcCCCeEEEEecCc----------CCCCCCCEEEECCCCc
Confidence 688999995331 123556677 7898766553321 1346899999999854
No 417
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=26.28 E-value=75 Score=24.95 Aligned_cols=24 Identities=25% Similarity=0.668 Sum_probs=21.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
..+.|.++++++...|.++|+..+
T Consensus 80 ~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 80 KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 688899999999999999998765
No 418
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=26.27 E-value=5.8e+02 Score=25.52 Aligned_cols=78 Identities=15% Similarity=-0.042 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG-tl~evin 184 (484)
..+++.+|.....- ++. . .+.++..|++.|.++.-. ......+....+.++...+.|.|++++-.. ....+++
T Consensus 137 ~~~~v~il~~d~~~-g~~--~-~~~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i~~~~~d~v~~~~~~~~~~~~~~~ 212 (347)
T cd06336 137 GGKKVALLGPNDAY-GQP--W-VAAYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKLLAEKPDVIFLGGPSPAPAALVIK 212 (347)
T ss_pred CCceEEEEccCCch-hHH--H-HHHHHHHHHHcCCEEeeecccCCCCcchHHHHHHHHhcCCCEEEEcCCCchHHHHHHH
Confidence 45788888755543 222 2 256778888888766322 222234556667777667899998776655 7788888
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.+-..
T Consensus 213 ~~~~~ 217 (347)
T cd06336 213 QAREL 217 (347)
T ss_pred HHHHc
Confidence 87654
No 419
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=26.27 E-value=1.8e+02 Score=26.83 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=38.1
Q ss_pred HhHHHHHHhcCCeE--EEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQF--TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~--~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~~~ 189 (484)
+.+...|+++|.++ ..+..+..........++....+|.|+.-||=|. =-|++..++++
T Consensus 30 ~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t~RDvTpEA~~~~~dK 95 (169)
T COG0521 30 PLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGITPRDVTPEATRPLFDK 95 (169)
T ss_pred hHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCCCCcCCHHHHHHHHhc
Confidence 47888899998765 2234455444444444433233999999999884 23667777665
No 420
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=25.69 E-value=1.5e+02 Score=27.43 Aligned_cols=48 Identities=17% Similarity=0.091 Sum_probs=33.0
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
|-..+...|.+.|.++.+...... .+.++ ...++|+||+.||-|..++
T Consensus 11 ft~~~~~~l~~~g~~v~v~~~~~~-~~~~~----~~~~~d~iilsgGpg~p~~ 58 (188)
T TIGR00566 11 FTYNLVQYFCELGAEVVVKRNDSL-TLQEI----EALLPLLIVISPGPCTPNE 58 (188)
T ss_pred HHHHHHHHHHHcCCceEEEECCCC-CHHHH----HhcCCCEEEEcCCCCChhh
Confidence 545677788888888777654332 22222 2236899999999999876
No 421
>PRK11249 katE hydroperoxidase II; Provisional
Probab=25.63 E-value=1.2e+02 Score=34.63 Aligned_cols=63 Identities=10% Similarity=0.074 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh------hH---HHHHHHHhhcCCCceEEEEcCCC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LH---AKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~------~~---a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
+++.||+.+-. .... + ..+..+|..+|+.+.++-.+.. |. +...........||+|++.||..
T Consensus 598 RKIaILVaDG~---d~~e-v-~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 598 RKVAILLNDGV---DAAD-L-LAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKA 669 (752)
T ss_pred cEEEEEecCCC---CHHH-H-HHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCch
Confidence 56777775532 2222 2 3678889999998888654321 11 11111122223699999999964
No 422
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=25.60 E-value=3.7e+02 Score=24.47 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCceEEE
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++.||. |...-.. ..++...+|++.|++|++... ..++...+++++....+++.||+
T Consensus 4 ~V~IIM----GS~SD~~-~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIA 63 (162)
T COG0041 4 KVGIIM----GSKSDWD-TMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIA 63 (162)
T ss_pred eEEEEe----cCcchHH-HHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEe
Confidence 566776 3333333 346888999999999876432 34555678888887666765554
No 423
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=25.58 E-value=6.6e+02 Score=24.83 Aligned_cols=78 Identities=10% Similarity=0.058 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+++.++.+..+-. +. ..+.++..|++.|+++... ......+....+.++...++|.|++++-..-.-.++..
T Consensus 131 g~~~v~i~~~~~~~g-~~---~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l~~~~pd~v~~~~~~~~~~~~~~~ 206 (333)
T cd06358 131 GARRWYLIGNDYVWP-RG---SLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERIAASGADAVLSTLVGQDAVAFNRQ 206 (333)
T ss_pred CCCeEEEEeccchhh-HH---HHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHHHHcCCCEEEEeCCCCchHHHHHH
Confidence 357888877665432 21 2346777888899876432 22233455566667666789988876655444466666
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 207 ~~~~ 210 (333)
T cd06358 207 FAAA 210 (333)
T ss_pred HHHc
Confidence 6543
No 424
>PHA02518 ParA-like protein; Provisional
Probab=25.55 E-value=2.4e+02 Score=25.89 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=36.0
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHH
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK 160 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~ 160 (484)
+..|.|+++|-||.-- .-.+.-.|...|.++-++-...++.......
T Consensus 2 ii~v~~~KGGvGKTT~--a~~la~~la~~g~~vlliD~D~q~~~~~~~~ 48 (211)
T PHA02518 2 IIAVLNQKGGAGKTTV--ATNLASWLHADGHKVLLVDLDPQGSSTDWAE 48 (211)
T ss_pred EEEEEcCCCCCCHHHH--HHHHHHHHHhCCCeEEEEeCCCCCChHHHHH
Confidence 6789999999998753 3467778888898888888877776666543
No 425
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=25.54 E-value=1e+02 Score=30.23 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=30.1
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCc-hhhhhhc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG-NGMIKSL 215 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSg-N~~A~sl 215 (484)
.+-+++++++||-++......|+..-.......+++=+||+=|. +..|..+
T Consensus 101 ~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~vevVPGISS~~aaaA~l 152 (249)
T TIGR02434 101 DDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFDYEVIPGITSVQALTARH 152 (249)
T ss_pred CCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCCEEEECCHHHHHHHHHHh
Confidence 45689999999999986433333221000012468889998554 4444444
No 426
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=25.48 E-value=2.2e+02 Score=25.42 Aligned_cols=57 Identities=21% Similarity=0.286 Sum_probs=35.4
Q ss_pred hHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigi 202 (484)
+.+.++..|+..|+++.-+-+ .++.-+..+++.+... ....||
T Consensus 13 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~~~-------------------------------~~~~GI 61 (143)
T TIGR01120 13 LKEEIKAFLVERGVKVIDKGTWSSERTDYPHYAKQVALAVAGG-------------------------------EVDGGI 61 (143)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCCHHHHHHHHHHHHHCC-------------------------------CCceEE
Confidence 456889999999987654322 3444444444443221 346677
Q ss_pred ecCCCchhhhhhcc
Q 011517 203 VPAGTGNGMIKSLL 216 (484)
Q Consensus 203 IP~GSgN~~A~sl~ 216 (484)
+=||||-+++-+..
T Consensus 62 liCGtGiG~siaAN 75 (143)
T TIGR01120 62 LICGTGIGMSIAAN 75 (143)
T ss_pred EEcCCcHHHHHHHh
Confidence 77888877776653
No 427
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.32 E-value=5.6e+02 Score=25.69 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhhhhc---C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhh
Q 011517 91 SKRLWCEKLRDFIDSF---G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLD 163 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~---~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~ 163 (484)
.|+.-.+.+++.+..+ + +|+=..|.+ |...+...|.+......++.|++++.+.-.. +.+..+..++++
T Consensus 10 iA~~i~~~ik~~i~~l~~~g~~P~Laii~v----g~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (284)
T PRK14170 10 LAKEIQEKVTREVAELVKEGKKPGLAVVLV----GDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELN 85 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444555555554432 3 344334445 4445777898888999999999987754432 334455556654
Q ss_pred c-CCCceEEEE---cCCChHHHHHHHHhc
Q 011517 164 L-SKYDGIVCV---SGDGILVEVVNGLLE 188 (484)
Q Consensus 164 ~-~~~d~IV~v---GGDGtl~evingL~~ 188 (484)
. ...|+|++- -+.=.-+++++.+--
T Consensus 86 ~D~~V~GIivqlPlP~~i~~~~i~~~I~p 114 (284)
T PRK14170 86 EDKTIHGILVQLPLPEHISEEKVIDTISY 114 (284)
T ss_pred CCCCCCeEEEecCCCCCCCHHHHHhccCc
Confidence 3 356777763 233334445555433
No 428
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=25.18 E-value=80 Score=25.77 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=19.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (484)
+.+.|...|+++.+.|+++|+..
T Consensus 71 r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 71 EVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred cEEEEECCCHHHHHHHHHHHHhh
Confidence 46899999999999999998754
No 429
>cd05800 PGM_like2 This PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily and is found in both archaea and bacteria. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four structural domains (subdomains) with a centrally located active site formed by four loops, one from each subdomain. All four subdomains are included in this alignment model.
Probab=25.12 E-value=3.6e+02 Score=28.69 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh------------hHHHHH
Q 011517 92 KRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------------LHAKEI 158 (484)
Q Consensus 92 ~~~w~~~l~~~~~~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~------------~~a~~l 158 (484)
...|.+.+.+.++. .-+.+.+-|++.+..|.+. ..+.++|+..|+++.....+.. .+..++
T Consensus 153 ~~~Y~~~l~~~~~~~~i~~~~~kivvd~~~G~~~------~~~~~il~~lg~~v~~~~~~~dg~F~~~~p~p~~~~l~~l 226 (461)
T cd05800 153 KPDYLEALRSLVDLEAIREAGLKVVVDPMYGAGA------GYLEELLRGAGVDVEEIRAERDPLFGGIPPEPIEKNLGEL 226 (461)
T ss_pred HHHHHHHHHHHhChhhhhcCCceEEEeCCCCCcH------HHHHHHHHHcCCCEEEeeCCcCCCCCCCCCCCCHHHHHHH
Confidence 35577777666532 1123578899999888654 3567788888887654322111 233444
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.=|||
T Consensus 227 ~~~v~~~~ad~Gia~D~Dg 245 (461)
T cd05800 227 AEAVKEGGADLGLATDGDA 245 (461)
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 4444444556655555555
No 430
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=25.07 E-value=2.4e+02 Score=29.13 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=35.4
Q ss_pred cCCCcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCe---EEEEecCChhHHHHHHHHhhc--------CCCceEEE
Q 011517 106 FGRPKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDL--------SKYDGIVC 172 (484)
Q Consensus 106 ~~~~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~--------~~~d~IV~ 172 (484)
..+||=...=+|||+|.+-- .+. .+.+.|.++++.-+ +++.=.-.++ .+...... .+||+||+
T Consensus 203 i~~PrIaV~GLNPHAGE~G~~G~EE-~~iI~PAIe~~r~~g~g~~v~GP~paD---t~F~~~~~~~~~~~~~~~~D~vva 278 (345)
T PRK02746 203 IEKPRIAIAGLNPHAGEQGQLGTEE-KDWLIPWLESWRQKNPDIQLLGPIPPD---TCWVSPAQAWYGKGVAEAPDGYLA 278 (345)
T ss_pred CCCCcEEEEeeCCCCCCCCCCcHHH-HHHHHHHHHHHHhcCCCceeeCCCCch---hhccccccccccccccCCCCEEEE
Confidence 35676555669999997532 221 24667777775332 4443222222 22223222 57999997
Q ss_pred Ec
Q 011517 173 VS 174 (484)
Q Consensus 173 vG 174 (484)
+=
T Consensus 279 MY 280 (345)
T PRK02746 279 LY 280 (345)
T ss_pred Cc
Confidence 53
No 431
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=24.90 E-value=6.9e+02 Score=24.81 Aligned_cols=67 Identities=7% Similarity=0.121 Sum_probs=39.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+.+.+.|++.-.+.. --..+ .+-++..+++.|+.+.+..+.. ...-.+..+.+...+.|+||+++.+
T Consensus 58 ~~~~Igvi~~~~~~~-f~~~l-~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 125 (346)
T PRK10401 58 VSDTIGVVVMDVSDA-FFGAL-VKAVDLVAQQHQKYVLIGNSYHEAEKERHAIEVLIRQRCNALIVHSKA 125 (346)
T ss_pred CCCEEEEEeCCCCCc-cHHHH-HHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 445677777433221 11222 2466777888888776654442 3333445566655789999999754
No 432
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.88 E-value=3.3e+02 Score=25.63 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.8
Q ss_pred HhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
..++..+++.|+++.+..+..... ..++.+.+...+.|+|++++.|-
T Consensus 19 ~gi~~~~~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~ 66 (265)
T cd06290 19 KGMERGLNGSGYSPIIATGHWNQSRELEALELLKSRRVDALILLGGDL 66 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 467778888898877765543322 23556666667899999998763
No 433
>cd03088 ManB ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In Mycobacterium tuberculosis, the causative agent of tuberculosis, PMM is involved in the biosynthesis of mannosylated lipoglycans that participate in the association of mycobacteria with host macrophage phagocytic receptors. ManB belongs to the the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrall
Probab=24.86 E-value=4e+02 Score=28.45 Aligned_cols=80 Identities=20% Similarity=0.184 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---------CC--hhHHHHHH
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---------TQ--QLHAKEIV 159 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---------~~--~~~a~~l~ 159 (484)
....|.+.+.+.++. .+-+.+-|++.|..|.+. ..+.++|++.|+++..... +. +....++.
T Consensus 146 ~~~~Y~~~l~~~i~~-~~~~~lkIvvD~~~G~~~------~~~~~ll~~lG~~v~~l~~~~~~~~~~~~~~~~~~l~~l~ 218 (459)
T cd03088 146 AADAYIARYTDFFGA-GALKGLRIGVYQHSSVGR------DLLVRILEALGAEVVPLGRSDTFIPVDTEAVRPEDRALAA 218 (459)
T ss_pred HHHHHHHHHHHHhCc-cccCCCEEEEECCCCCHH------HHHHHHHHHcCCeEEEeCCCCCCCCCCCCcCCHHHHHHHH
Confidence 345677777666542 112468899999888653 3577888888887654321 11 12223333
Q ss_pred HHhhcCCCceEEEEcCCC
Q 011517 160 KVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 160 ~~~~~~~~d~IV~vGGDG 177 (484)
+.+...+.|..++.-|||
T Consensus 219 ~~v~~~~adlGia~D~Dg 236 (459)
T cd03088 219 AWAAEHGLDAIVSTDGDG 236 (459)
T ss_pred HHHHhcCCCEEEEeCCCC
Confidence 333334678888887887
No 434
>PTZ00062 glutaredoxin; Provisional
Probab=24.84 E-value=3.4e+02 Score=25.78 Aligned_cols=67 Identities=19% Similarity=0.363 Sum_probs=40.0
Q ss_pred hhhcCCCcEEEEEEc-----CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 103 IDSFGRPKRLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 103 ~~~~~~~~r~lviiN-----P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+..+-...+++||.= |..+ |-++++.+|+..+++|..+.......+++.+++......=-.|.++|.
T Consensus 106 v~~li~~~~Vvvf~Kg~~~~p~C~-------~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 106 IERLIRNHKILLFMKGSKTFPFCR-------FSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred HHHHHhcCCEEEEEccCCCCCCCh-------hHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 333334567888864 3332 556889999999999887666555555555555431111124556665
No 435
>PRK11175 universal stress protein UspE; Provisional
Probab=24.82 E-value=3.1e+02 Score=26.95 Aligned_cols=69 Identities=17% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHH-----HHHhcCcCcccccCCcEEEecCCCc
Q 011517 135 PLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 135 p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG-GDGtl~evi-----ngL~~~~~~~~~~~~pigiIP~GSg 208 (484)
..+...+++++........-+..+.+.+...++|.||+-. |.+.+.+.+ ..|+.. .++|+-++|.+.-
T Consensus 76 ~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~------~~~pvlvv~~~~~ 149 (305)
T PRK11175 76 KPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRK------CPCPVLMVKDQDW 149 (305)
T ss_pred HHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhc------CCCCEEEeccccc
Confidence 3445567766654332222234455555556788777632 334455443 344443 3689999998643
Q ss_pred h
Q 011517 209 N 209 (484)
Q Consensus 209 N 209 (484)
+
T Consensus 150 ~ 150 (305)
T PRK11175 150 P 150 (305)
T ss_pred C
Confidence 3
No 436
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=24.77 E-value=1.8e+02 Score=29.12 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=51.4
Q ss_pred cEEEEEEcCCCCCcchhhchH-HhHHHHHHhcCCeEEEEec--------------CChhHHHHHHHHhhcCCCceEEEEc
Q 011517 110 KRLYIFVNPFGGKKIASKIFL-DDVKPLLEDANIQFTVQET--------------TQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~-~~v~p~l~~ag~~~~v~~T--------------~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
++.++++.|.=|.... .|. ..+++.....-++.--+.| +..+++.+.++.+...+...|++=+
T Consensus 103 P~~~~l~DPVMGD~gg--lYV~~~~~~~~~~~lip~AdiiTPN~fELe~Ltg~~~~~~~da~~aa~~L~~~gp~~vlVTS 180 (281)
T COG2240 103 PNALYLCDPVMGDPGG--LYVAPEVAEAYRDELLPLADIITPNIFELEILTGKPLNTLDDAVKAARKLGADGPKIVLVTS 180 (281)
T ss_pred CCeEEEeCCcccCCCc--eeeccchHHHHHHhhcchhhEeCCCHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCCEEEEec
Confidence 4488999999887653 221 2333333322222111122 3356777777777655666666643
Q ss_pred CCChHHHHHHHHhcCcCcccccCC--cEEEecCCCchhhhhhcc
Q 011517 175 GDGILVEVVNGLLEREDWNDAIKV--PLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 175 GDGtl~evingL~~~~~~~~~~~~--pigiIP~GSgN~~A~sl~ 216 (484)
=...-...-+-.+.....+.+-.+ -+-..|-|||+-|+.-+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~h~~~~v~~~~~GtGDL~salll 224 (281)
T COG2240 181 LSRAGMSTGNFEMLGKSAELAWHISPLVPFIPNGTGDLFSALLL 224 (281)
T ss_pred ccccCCCCceEEEeccchhhhhhhhhcCCCCCCCchHHHHHHHH
Confidence 222111111212111111111111 233349999999987664
No 437
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=24.73 E-value=4e+02 Score=25.27 Aligned_cols=66 Identities=9% Similarity=0.201 Sum_probs=42.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCCh----HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGt----l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|+++.+..++... ...+..+++...++|+||+.+++.. ..+.++.+... .+|+-.+
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~-------~ipvV~~ 89 (273)
T cd01541 19 RGIESVLSEKGYSLLLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKL-------GIPYVFI 89 (273)
T ss_pred HHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHC-------CCCEEEE
Confidence 57788888889888776654333 2345556666678999999987653 22455555433 4666554
No 438
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=24.67 E-value=3.2e+02 Score=28.95 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHH
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKV 161 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~ 161 (484)
...+.+.|.+.++. ..+++.|++.+..|.+. ..+.++|+..|+++..+..+.. .+..++.+.
T Consensus 156 ~~~Y~~~l~~~i~~--~~~~lkvvvD~~nG~~~------~~~~~ll~~lg~~v~~in~~~dg~~~~~~~~~~~~~~l~~~ 227 (448)
T PRK14316 156 LRKYLQFLKSTIDE--DLSGLKVALDCANGATS------SLAPRLFADLGADVTVIGTSPDGLNINDGVGSTHPEALQEL 227 (448)
T ss_pred HHHHHHHHHHhcCc--ccCCCEEEEECCCchhh------HHHHHHHHHcCCeEEEEccCCCCCCCCCCCCCCCHHHHHHH
Confidence 34577777666542 12568899999888653 3567788888887765532211 223334333
Q ss_pred hhcCCCceEEEEcCCC
Q 011517 162 LDLSKYDGIVCVSGDG 177 (484)
Q Consensus 162 ~~~~~~d~IV~vGGDG 177 (484)
....++|.-++.-|||
T Consensus 228 v~~~~adlGia~DgDa 243 (448)
T PRK14316 228 VVEKGADLGLAFDGDA 243 (448)
T ss_pred HhhcCCCEEEEEcCCC
Confidence 3334566666666665
No 439
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=24.66 E-value=1.9e+02 Score=24.98 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=37.1
Q ss_pred HhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..++.+|++.|.++... .....+...+..+++. +++|.|++.||=|. ..+++..+..
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~-~~~DlvittGG~g~g~~D~t~~ai~~~g~ 85 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS-READLVLTTGGTGVGRRDVTPEALAELGE 85 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH-hcCCEEEECCCCCCCCCcchHHHHHHhcC
Confidence 36788899999876543 3344444455554443 45999999999773 5666666653
No 440
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=24.64 E-value=96 Score=25.75 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.8
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
.+++++...++++-+.|.++|++++.
T Consensus 73 ~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 47799999999999999999998764
No 441
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=24.55 E-value=2.2e+02 Score=26.97 Aligned_cols=39 Identities=10% Similarity=0.144 Sum_probs=29.8
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~ 151 (484)
|+..|+|.++|-||.. ..-.+.-.|...|.++-++....
T Consensus 1 ~ii~v~~~KGGvGKTt--~a~~LA~~la~~g~~VlliD~D~ 39 (251)
T TIGR01969 1 RIITIASGKGGTGKTT--ITANLGVALAKLGKKVLALDADI 39 (251)
T ss_pred CEEEEEcCCCCCcHHH--HHHHHHHHHHHCCCeEEEEeCCC
Confidence 4788999999999875 33467888888888777766554
No 442
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=24.46 E-value=2.4e+02 Score=26.30 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=31.3
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+...+...|+..|.+++++..... . ++.+||+||+-||-++..
T Consensus 15 ~~~~~~~~l~~~g~~~~~~~~~~~-------~--~l~~~d~iii~GG~~~~~ 57 (200)
T PRK13527 15 HIDALKRALDELGIDGEVVEVRRP-------G--DLPDCDALIIPGGESTTI 57 (200)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCh-------H--HhccCCEEEECCCcHHHH
Confidence 445677888899988887776542 1 235799999999977753
No 443
>cd05801 PGM_like3 This bacterial PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=24.44 E-value=3.1e+02 Score=29.83 Aligned_cols=51 Identities=25% Similarity=0.357 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 91 SKRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
....+.+.|.+.++. .-+.+.+-|++.|..|.+. ..+.++|+..|+++..+
T Consensus 189 ~~~~Y~~~l~~~v~~~~~~~~~lkVvvd~~~G~~~------~~~~~ll~~lG~~v~~l 240 (522)
T cd05801 189 FVTPYVADLGNVIDMDAIRKSGLRLGVDPLGGASV------PYWQPIAEKYGLNLTVV 240 (522)
T ss_pred cHHHHHHHHHHhhChhhhhcCCceEEEeCCCCccH------HHHHHHHHHcCCCEEEE
Confidence 345677777666542 1233578999999998764 35677888889876543
No 444
>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems. Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Probab=24.37 E-value=4.6e+02 Score=24.87 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=38.4
Q ss_pred HhHHHHHHhcCCeEEEEec-----CChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQET-----TQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T-----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evingL~~~~~~~~~~~~pigiI 203 (484)
+.++..+++.|...-+..+ .....-.+..+.+.. +.|+|++++.+.+. .+.++.+.+. .+|+-.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~-------~ipvV~~ 89 (275)
T cd06307 19 AALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAAA-------GVPVVTL 89 (275)
T ss_pred HHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHC-------CCcEEEE
Confidence 3555556666543333222 223333455556655 89999999988764 4677777654 5676554
No 445
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=24.32 E-value=2.4e+02 Score=25.89 Aligned_cols=46 Identities=15% Similarity=0.228 Sum_probs=30.1
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
|...+...|+..|++++++..... ..++ .+ .++|+||+.||.+..+
T Consensus 10 ~~~~l~~~l~~~g~~~~~~~~~~~--~~~~-~~---~~~~glii~Gg~~~~~ 55 (188)
T TIGR00888 10 YTQLIARRLRELGVYSELVPNTTP--LEEI-RE---KNPKGIILSGGPSSVY 55 (188)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCC--HHHH-hh---cCCCEEEECCCCCCcC
Confidence 334688889999998877654331 1222 12 2367999999998654
No 446
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=24.32 E-value=4e+02 Score=21.89 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=35.8
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh------HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI------LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt------l~evingL~~~~~~~~~~~~pigiI 203 (484)
+.+...+.+.|++++........-+.++++.++..+.|.||+-....+ +..+.+.++.+. +.|+.++
T Consensus 59 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~------~~pvlvv 131 (132)
T cd01988 59 RQAERIAASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESA------PCDVAVV 131 (132)
T ss_pred HHHHHHhhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcC------CCCEEEe
Confidence 455666666788776554333233345555555556777776544322 333444554442 4566554
No 447
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=24.29 E-value=2.8e+02 Score=32.55 Aligned_cols=94 Identities=17% Similarity=0.242 Sum_probs=58.7
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCC--------------------------------------------C
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK--------------------------------------------Y 167 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~--------------------------------------------~ 167 (484)
+....|+.+|+++.++.-.++..|..+++++.+.. .
T Consensus 557 ~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~ 636 (903)
T PRK15122 557 PAIAALRENGVAVKVLTGDNPIVTAKICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQKSRVLKALQAN 636 (903)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhC
Confidence 45556888999988877788888888998876531 1
Q ss_pred ceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCce
Q 011517 168 DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHK 237 (484)
Q Consensus 168 d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~ 237 (484)
..+|++=||| +|++- .|- .-.+|| -.|+|.+.|+.-..-.=...+...-..++..|+.
T Consensus 637 G~vVamtGDG-vNDaP-ALk---------~ADVGI-Amg~gtdvAkeaADiVLldd~f~~Iv~ai~~gR~ 694 (903)
T PRK15122 637 GHTVGFLGDG-INDAP-ALR---------DADVGI-SVDSGADIAKESADIILLEKSLMVLEEGVIKGRE 694 (903)
T ss_pred CCEEEEECCC-chhHH-HHH---------hCCEEE-EeCcccHHHHHhcCEEEecCChHHHHHHHHHHHH
Confidence 2378888999 45532 222 224553 4578999999753211012345555556655553
No 448
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=24.28 E-value=2.2e+02 Score=23.73 Aligned_cols=79 Identities=10% Similarity=0.209 Sum_probs=44.3
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLERE 190 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~ 190 (484)
+++++. .+| -...+..++++..+++.|+++++....-. ++... .+++|.|+ .|-.=- --.+.+-+.-
T Consensus 2 ~Ill~C--~~G--aSSs~la~km~~~a~~~gi~~~i~a~~~~----e~~~~--~~~~Dvil-l~PQv~--~~~~~i~~~~ 68 (99)
T cd05565 2 NVLVLC--AGG--GTSGLLANALNKGAKERGVPLEAAAGAYG----SHYDM--IPDYDLVI-LAPQMA--SYYDELKKDT 68 (99)
T ss_pred EEEEEC--CCC--CCHHHHHHHHHHHHHHCCCcEEEEEeeHH----HHHHh--ccCCCEEE-EcChHH--HHHHHHHHHh
Confidence 355555 333 44557788999999999999987654332 22222 35788544 343321 1122221110
Q ss_pred CcccccCCcEEEecC
Q 011517 191 DWNDAIKVPLGVVPA 205 (484)
Q Consensus 191 ~~~~~~~~pigiIP~ 205 (484)
....+|+.+||.
T Consensus 69 ---~~~~ipv~~I~~ 80 (99)
T cd05565 69 ---DRLGIKLVTTTG 80 (99)
T ss_pred ---hhcCCCEEEeCH
Confidence 113689999984
No 449
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=24.24 E-value=84 Score=24.09 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=21.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
..+.|.+.++++.+.|.++|+..+
T Consensus 78 ~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 78 RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 588899999999999999998764
No 450
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=24.24 E-value=7e+02 Score=24.63 Aligned_cols=77 Identities=17% Similarity=0.054 Sum_probs=48.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC----hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ----QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~----~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
-+++.++.--... +. . ..+.++..+++.|+.+...++-. ..+...+++++...+.|.||+.+.......++.
T Consensus 160 ~~~v~~l~~~~~~-g~--~-~~~~~~~~~~~~gi~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~~~~~~~~~ 235 (348)
T cd06350 160 WTWVGLVYSDDDY-GR--S-GLSDLEEELEKNGICIAFVEAIPPSSTEEDIKRILKKLKSSTARVIVVFGDEDDALRLFC 235 (348)
T ss_pred CeEEEEEEecchh-HH--H-HHHHHHHHHHHCCCcEEEEEEccCCCcHHHHHHHHHHHHhCCCcEEEEEeCcHHHHHHHH
Confidence 4677777753331 22 1 23567778888898765433322 346677777877667788888776666666776
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.+.+.
T Consensus 236 ~a~~~ 240 (348)
T cd06350 236 EAYKL 240 (348)
T ss_pred HHHHh
Confidence 66544
No 451
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=24.21 E-value=4.1e+02 Score=28.36 Aligned_cols=82 Identities=11% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----------CC-----hhHHH
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----------TQ-----QLHAK 156 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----------~~-----~~~a~ 156 (484)
...+.+.|.+.++. .+-+.+.|+++|..|.+.. +...+..+|+..|+++.++.. .. +.+..
T Consensus 152 ~~~Yi~~l~~~id~-~~~~~lkVvvD~~~G~~~~---~~~~l~~~l~~lG~~v~v~~~~~~pdg~F~~~~p~P~~~~~l~ 227 (456)
T PRK15414 152 RDAYVDHLFGYINV-KNLTPLKLVINSGNGAAGP---VVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRD 227 (456)
T ss_pred HHHHHHHHHHhccc-ccCCCCEEEEECCCCcchh---hHHHHHHHHHhcCCCeEEEEeecCCCCCCCCCCCCCCCHHHHH
Confidence 45677777666532 1125789999999987642 224554568888875554321 11 12223
Q ss_pred HHHHHhhcCCCceEEEEcCCC
Q 011517 157 EIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDG 177 (484)
++.+.+...+.|..++.=|||
T Consensus 228 ~l~~~v~~~~adlGia~DgDa 248 (456)
T PRK15414 228 DTRNAVIKHGADMGIAFDGDF 248 (456)
T ss_pred HHHHHHHHcCCCEEEEECCCc
Confidence 343334345667766666666
No 452
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=24.11 E-value=2.3e+02 Score=25.24 Aligned_cols=97 Identities=19% Similarity=0.335 Sum_probs=54.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCe---EEEEecCChhHHHHHHHHhhc-CCCceEEEEc----CCC---
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDG--- 177 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~-~~~d~IV~vG----GDG--- 177 (484)
..|+.|++-.+-- .-..+.. +-....|..+|++ ++++..-..-+.--.++.+.. ++||+||+.| |+-
T Consensus 7 ~~ri~IV~s~fn~-~I~~~Ll-~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT~H~ 84 (141)
T PLN02404 7 GLRFGVVVARFNE-IITKNLL-EGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDTTHY 84 (141)
T ss_pred CCEEEEEEecCcH-HHHHHHH-HHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCCchh
Confidence 4567777643311 1122222 3455567777874 667766666666555665543 5799999988 433
Q ss_pred --hHHHHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 178 --ILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 178 --tl~evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
.-+++.+||++-.- +....+-+|++-.++.
T Consensus 85 e~V~~~v~~gl~~vsl-~~~~PV~~GVLt~~~~ 116 (141)
T PLN02404 85 DAVANSAASGVLSAGL-NSGVPCIFGVLTCDDM 116 (141)
T ss_pred HHHHHHHHHHHHHHHh-ccCCCEEEEEcCCCCH
Confidence 24467778876521 1122344566655543
No 453
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=24.05 E-value=1e+02 Score=30.78 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=15.8
Q ss_pred ceEEEEcCCC-hHHHHHHHHhc
Q 011517 168 DGIVCVSGDG-ILVEVVNGLLE 188 (484)
Q Consensus 168 d~IV~vGGDG-tl~evingL~~ 188 (484)
-.||+++||| +++--++.|..
T Consensus 78 ~~VV~i~GDG~~f~ig~~eL~t 99 (279)
T PRK11866 78 LTVIGYGGDGDGYGIGLGHLPH 99 (279)
T ss_pred CcEEEEECChHHHHccHHHHHH
Confidence 3699999999 57766666654
No 454
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=23.96 E-value=2.8e+02 Score=28.21 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=46.0
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHH
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGL 186 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL 186 (484)
+++.-....++....-...++.+|++.|+++... .........+..+++...++|.||+.||=|. ..|++..+
T Consensus 161 ltvsde~~~G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~g~~D~tpeAl~~l 240 (312)
T PRK03604 161 LVLSDSIAAGTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGLGPRDVTPEALAPL 240 (312)
T ss_pred EEECCcCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCCCCCccHHHHHHHh
Confidence 3354433334332223347889999999876543 3445444555555553357999999999664 55666666
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.++
T Consensus 241 g~~ 243 (312)
T PRK03604 241 LER 243 (312)
T ss_pred cCc
Confidence 543
No 455
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=23.95 E-value=2e+02 Score=23.51 Aligned_cols=78 Identities=23% Similarity=0.247 Sum_probs=44.0
Q ss_pred HHHHHHHHhhh-h-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-------------hHHHHH
Q 011517 94 LWCEKLRDFID-S-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-------------LHAKEI 158 (484)
Q Consensus 94 ~w~~~l~~~~~-~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-------------~~a~~l 158 (484)
.|.+.|.+.+. . .-+.+++.|++.+..|.+. ..+..+|+..|+++..+-.... .....+
T Consensus 2 ~Y~~~l~~~~~~~~~~~~~~~kivvD~~~G~~~------~~~~~ll~~lg~~~~~~n~~~d~~f~~~~~p~p~~~~l~~~ 75 (104)
T PF02879_consen 2 AYIESLLSFIDILEAIKKSGLKIVVDCMNGAGS------DILPRLLERLGCDVIELNCDPDPDFPNQHAPNPEEESLQRL 75 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHTTCEEEEE-TTSTTH------HHHHHHHHHTTCEEEEESSS-STTGTTTSTSSTSTTTTHHH
T ss_pred hHHHHHhhhccchhhcccCCCEEEEECCCCHHH------HHHHHHHHHcCCcEEEEecccccccccccccccccchhHHH
Confidence 35555655554 1 1233457899999988764 3566778888886654322111 112334
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.=|||
T Consensus 76 ~~~v~~~~ad~g~~~DgDa 94 (104)
T PF02879_consen 76 IKIVRESGADLGIAFDGDA 94 (104)
T ss_dssp HHHHHHSTTSEEEEE-TTS
T ss_pred HHHhhccCceEEEEECCcC
Confidence 4444445678888888887
No 456
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=23.66 E-value=76 Score=25.63 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRD 101 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (484)
+.+.|...++++.+.|+++|+.
T Consensus 74 ~~~~f~a~s~~e~~~Wi~ai~~ 95 (96)
T cd01260 74 KSFYFAAETLDDLSQWVNHLIT 95 (96)
T ss_pred cEEEEEeCCHHHHHHHHHHHHh
Confidence 6788999999999999999875
No 457
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=23.66 E-value=3.7e+02 Score=25.33 Aligned_cols=70 Identities=16% Similarity=0.101 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHH------------hhcCCCceEEEEcCCC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDG 177 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~IV~vGGDG 177 (484)
++++|+ |.|+.. ..+++.++ ++|..++|+..+-.....+++++ -++.+++.||++-||-
T Consensus 10 k~vlVv-----GgG~va---~rk~~~Ll-~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~ 80 (205)
T TIGR01470 10 RAVLVV-----GGGDVA---LRKARLLL-KAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE 80 (205)
T ss_pred CeEEEE-----CcCHHH---HHHHHHHH-HCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH
Confidence 466665 444432 23555444 46777777755544444444432 1235677888888888
Q ss_pred hHHHHHHHHhc
Q 011517 178 ILVEVVNGLLE 188 (484)
Q Consensus 178 tl~evingL~~ 188 (484)
-+|+-+-....
T Consensus 81 ~ln~~i~~~a~ 91 (205)
T TIGR01470 81 ELNRRVAHAAR 91 (205)
T ss_pred HHHHHHHHHHH
Confidence 77766555443
No 458
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=23.52 E-value=4.4e+02 Score=24.36 Aligned_cols=52 Identities=13% Similarity=0.190 Sum_probs=33.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
.++.|++|.. . +. .....|+.+|.++..+. .. . ++++||+||+-||-++..+
T Consensus 2 m~~~i~~~~g--~------~~-~~~~~l~~~g~~~~~~~--~~-------~--~l~~~dgiii~GG~~~~~~ 53 (189)
T PRK13525 2 MKIGVLALQG--A------VR-EHLAALEALGAEAVEVR--RP-------E--DLDEIDGLILPGGESTTMG 53 (189)
T ss_pred CEEEEEEccc--C------HH-HHHHHHHHCCCEEEEeC--Ch-------h--HhccCCEEEECCCChHHHH
Confidence 3678888762 1 22 23355788887766543 21 1 2457999999999876643
No 459
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=23.51 E-value=3.3e+02 Score=24.32 Aligned_cols=79 Identities=20% Similarity=0.342 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC---eEEEEecCChhHHHHHHHHhhc-CCCceEEEEc----CCCh--
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDL-SKYDGIVCVS----GDGI-- 178 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~---~~~v~~T~~~~~a~~l~~~~~~-~~~d~IV~vG----GDGt-- 178 (484)
+.|+.|+.--+-.. -..+. .+.+...|...|+ +++++..-..-+.--.++.+.. ++||+||+.| |+-.
T Consensus 3 ~~ri~IV~s~~n~~-i~~~l-l~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~T~H~ 80 (144)
T PF00885_consen 3 GLRIAIVVSRFNEE-ITDRL-LEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGETDHF 80 (144)
T ss_dssp TEEEEEEEESTTHH-HHHHH-HHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--SSTHH
T ss_pred CCEEEEEEEeccHH-HHHHH-HHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCCchHH
Confidence 34566665443221 11222 2356667777887 7888877777777666666543 4699999999 3333
Q ss_pred ---HHHHHHHHhcC
Q 011517 179 ---LVEVVNGLLER 189 (484)
Q Consensus 179 ---l~evingL~~~ 189 (484)
-+++.+||++-
T Consensus 81 ~~v~~~v~~gl~~l 94 (144)
T PF00885_consen 81 EYVANAVSRGLMDL 94 (144)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 23566666653
No 460
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.46 E-value=2.7e+02 Score=23.61 Aligned_cols=45 Identities=11% Similarity=-0.032 Sum_probs=30.9
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
...+...|..+|+.+.+... .......+.++..++..++++|.+-
T Consensus 44 a~~la~~LR~~gi~v~~d~~---~sl~kqlk~A~k~g~~~~iiiG~~e 88 (121)
T cd00858 44 AKEISEELRELGFSVKYDDS---GSIGRRYARQDEIGTPFCVTVDFDT 88 (121)
T ss_pred HHHHHHHHHHCCCEEEEeCC---CCHHHHHHHhHhcCCCEEEEECcCc
Confidence 34677778889998877544 2333444555567888999999775
No 461
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=23.41 E-value=6e+02 Score=23.54 Aligned_cols=45 Identities=7% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHh-cCCeEEEEecCChh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETTQQL 153 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~-ag~~~~v~~T~~~~ 153 (484)
....+++.|.|+.+|-||..- .-.++..|.. .|.++-++.....+
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~--a~nLA~~la~~~g~~VLlvD~D~~~ 77 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFT--AINLAISLAQEYDKTVLLIDADLRR 77 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHH--HHHHHHHHHHhcCCeEEEEECCCCC
Confidence 345789999999999999753 3467778875 58887777666554
No 462
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=23.40 E-value=2e+02 Score=30.06 Aligned_cols=68 Identities=12% Similarity=-0.019 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec-CChhHHHH
Q 011517 88 SEDSKRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-TQQLHAKE 157 (484)
Q Consensus 88 ~~~~~~~w~~~l~~~~~~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T-~~~~~a~~ 157 (484)
+-++...|.+.+...-.. ...+.++..|.|.++|-||.--. -.+.-.|...|..+-++-. ..++.+..
T Consensus 83 tl~eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta--~nLA~~LA~~G~rVLlIDl~DpQ~nlt~ 152 (387)
T PHA02519 83 TIDQISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSA--VHTAQWLALQGHRVLLIEGNDPQGTASM 152 (387)
T ss_pred cHHHHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHH--HHHHHHHHhCCCcEEEEeCCCCCCCccc
Confidence 335666787766532111 12234788999999999997643 4788889999999988884 88777654
No 463
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=23.37 E-value=6.2e+02 Score=25.02 Aligned_cols=77 Identities=9% Similarity=-0.004 Sum_probs=46.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.++. +...-++. +.+.++..+++.|+++.... .....+....+.++...+.|.|++.+..+-.-.++..+
T Consensus 135 ~~~v~~i~-~~~~~g~~---~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l~~~~~d~v~~~~~~~~~~~~~~~~ 210 (334)
T cd06327 135 GKKWFFLT-ADYAFGHS---LERDARKVVKANGGKVVGSVRHPLGTSDFSSYLLQAQASGADVLVLANAGADTVNAIKQA 210 (334)
T ss_pred CCeEEEEe-cchHHhHH---HHHHHHHHHHhcCCEEcCcccCCCCCccHHHHHHHHHhCCCCEEEEeccchhHHHHHHHH
Confidence 46666554 44433332 23578888999998763321 22234555666777667899988887666555566665
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 211 ~~~ 213 (334)
T cd06327 211 AEF 213 (334)
T ss_pred HHh
Confidence 543
No 464
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=23.23 E-value=1.9e+02 Score=29.18 Aligned_cols=46 Identities=17% Similarity=0.227 Sum_probs=35.3
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
++...|+++|+.+-+.......|+.+..+++.+.+|=-+|++|||-
T Consensus 153 EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdvIIs~Gdv 198 (301)
T TIGR01684 153 DSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDIIISGGHK 198 (301)
T ss_pred HHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCEEEECCcc
Confidence 5666788889998888888888999888888877653455566664
No 465
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=23.22 E-value=2.4e+02 Score=26.08 Aligned_cols=57 Identities=19% Similarity=0.216 Sum_probs=35.8
Q ss_pred hHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigi 202 (484)
+.+.++..|++.|+++.-+-| .++.-|..+++.+. +. ....||
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~~~~e~~dYpd~a~~va~~V~------------------------~g-------~~d~GI 62 (171)
T PRK08622 14 EKMAVSDYLKSKGHEVIDVGTYDFTRTHYPIFGKKVGEAVA------------------------SG-------EADLGV 62 (171)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHH------------------------cC-------CCcEEE
Confidence 456899999999987755444 23333333333332 21 346688
Q ss_pred ecCCCchhhhhhcc
Q 011517 203 VPAGTGNGMIKSLL 216 (484)
Q Consensus 203 IP~GSgN~~A~sl~ 216 (484)
+=||||.+++-+..
T Consensus 63 liCGTGiG~siaAN 76 (171)
T PRK08622 63 CICGTGVGISNAVN 76 (171)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888877653
No 466
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=23.06 E-value=2e+02 Score=26.26 Aligned_cols=47 Identities=13% Similarity=0.093 Sum_probs=31.7
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
..++..|.+.|+++.. +.........+..+++. +.+|.||+.||=|.
T Consensus 22 ~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~-~~~dlVIttGG~G~ 70 (170)
T cd00885 22 AFLAKELAELGIEVYRVTVVGDDEDRIAEALRRAS-ERADLVITTGGLGP 70 (170)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hCCCEEEECCCCCC
Confidence 4688889999987654 33444444445444443 47899999999773
No 467
>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor. Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.
Probab=23.03 E-value=8e+02 Score=25.16 Aligned_cols=58 Identities=10% Similarity=0.094 Sum_probs=39.0
Q ss_pred HhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+.+...|++.|+++..... ....+...+++++.. +.|.|+++|-......++..+.+.
T Consensus 166 ~~~~~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~-~~~vIi~~~~~~~~~~i~~qa~~~ 225 (399)
T cd06384 166 EGVFLALQEENANVSAHPYHIEKNSDIIEIIQFIKQ-NGRIVYICGPLETFLEIMLQAQRE 225 (399)
T ss_pred HHHHHHHHhcCceEEEEEEeccchhhHHHHHHHHhh-cccEEEEeCCchHHHHHHHHHHHc
Confidence 3456667888887765432 224456677777764 788888777777777777776554
No 468
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=22.98 E-value=1.5e+02 Score=31.90 Aligned_cols=66 Identities=21% Similarity=0.377 Sum_probs=38.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+-+.+-+-|.|.+|+=- .+.-=+|.+++++|+.... -.|+-. +.+++|.++++|- |+++|-.
T Consensus 336 ~~G~~V~faIHPVAGRMP------GHMNVLLAEa~VpYd~~~e-----mdeiN~--~f~~~Dv~lViGA----NDvVNPa 398 (463)
T PF02233_consen 336 ERGVEVKFAIHPVAGRMP------GHMNVLLAEANVPYDIVKE-----MDEINP--DFPDTDVVLVIGA----NDVVNPA 398 (463)
T ss_dssp HTT-EEEEEE-TTSSSST------THHHHHHHHCT--GGGEEE-----HHHHGG--GGGG-SEEEEES-----SGGG-CH
T ss_pred hCCCEEEEEeccccCCCC------CcceEEEEecCCCHHHHhh-----hhhccc--chhcCCEEEEecc----ccccCch
Confidence 456788899999999743 3555589999998876432 112212 3458999999996 4566655
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 399 A~~ 401 (463)
T PF02233_consen 399 ARE 401 (463)
T ss_dssp HCC
T ss_pred hcc
Confidence 443
No 469
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=22.86 E-value=2.6e+02 Score=25.08 Aligned_cols=57 Identities=21% Similarity=0.195 Sum_probs=36.4
Q ss_pred hHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigi 202 (484)
+.+.++..|++.|+++.-+-+ .++.-|..+++.+. .. ....||
T Consensus 12 lK~~l~~~L~~~g~eV~D~G~~~~~~~dYpd~a~~va~~V~------------------------~g-------~~~~GI 60 (144)
T TIGR00689 12 LKSEIIEHLKQKGHEVIDCGTLYDERVDYPDYAKLVADKVV------------------------AG-------EVSLGI 60 (144)
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHHH------------------------cC-------CCceEE
Confidence 456889999999987654433 34444444443332 21 356788
Q ss_pred ecCCCchhhhhhcc
Q 011517 203 VPAGTGNGMIKSLL 216 (484)
Q Consensus 203 IP~GSgN~~A~sl~ 216 (484)
+=||||.+++-+..
T Consensus 61 liCGtGiG~siaAN 74 (144)
T TIGR00689 61 LICGTGIGMSIAAN 74 (144)
T ss_pred EEcCCcHHHHHHHh
Confidence 88899888887764
No 470
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.82 E-value=84 Score=24.59 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRD 101 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (484)
+.+.|...+++++..|+++|+.
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~ 90 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALEL 90 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHh
Confidence 5788988999999999999875
No 471
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=22.79 E-value=2.7e+02 Score=28.94 Aligned_cols=85 Identities=14% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHH---HhhcCCCceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVK---VLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~---~~~~~~~d~IV~vGGDGt 178 (484)
..+++.|+.|+.=. . .|.+++...|+.+++.+..+.- ++-.+..++.. +...+.-+.||.+|| |.
T Consensus 32 ~~~k~~ivtd~~v~----~-~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGG-Gv 105 (360)
T COG0337 32 AGRKVAIVTDETVA----P-LYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGG-GV 105 (360)
T ss_pred cCCeEEEEECchhH----H-HHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECC-hH
Confidence 34589999998633 2 4678899999999988743322 22222223322 333455678888888 77
Q ss_pred HHHHH---HHHhcCcCcccccCCcEEEecC
Q 011517 179 LVEVV---NGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 179 l~evi---ngL~~~~~~~~~~~~pigiIP~ 205 (484)
+.++. -+-+.| .+++-.||.
T Consensus 106 igDlaGF~Aaty~R-------Gv~fiqiPT 128 (360)
T COG0337 106 IGDLAGFAAATYMR-------GVRFIQIPT 128 (360)
T ss_pred HHHHHHHHHHHHHc-------CCCeEeccc
Confidence 76653 233333 677777775
No 472
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=22.75 E-value=2.3e+02 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCc-hhhhhhc
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTG-NGMIKSL 215 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSg-N~~A~sl 215 (484)
.+-+.+++++||-.+.....-|++.-. ...+++=+||+=|. +..|..+
T Consensus 79 ~g~~Vv~L~sGDP~~yg~~~~l~~~l~---~~~i~veiiPGISS~~aaaA~l 127 (257)
T PRK15473 79 AGKTVVRLQTGDVSLYGSIREQGEELT---KRGIDFQVVPGVSSFLGAAAEL 127 (257)
T ss_pred CCCeEEEEeCcCchhhhhHHHHHHHHH---HCCCCEEEeCChhHHHHHHHHc
Confidence 345789999999777655544444311 12578999999664 4444444
No 473
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.73 E-value=5.6e+02 Score=25.89 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhhhh---cC-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhh
Q 011517 91 SKRLWCEKLRDFIDS---FG-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLD 163 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~---~~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~ 163 (484)
.|+.-.+.+++.+.. .+ +|+=..|.+ |...+...|.+......++.|++++.+.-. .+.+..+..++++
T Consensus 10 vA~~i~~~l~~~v~~l~~~g~~P~LaiI~v----g~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (297)
T PRK14167 10 VAAQIRDDLTDAIETLEDAGVTPGLATVLM----SDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELN 85 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 444455555544332 23 454344555 444577789999999999999998776433 2344555566664
Q ss_pred c-CCCceEEE
Q 011517 164 L-SKYDGIVC 172 (484)
Q Consensus 164 ~-~~~d~IV~ 172 (484)
. ...|+|++
T Consensus 86 ~D~~V~GIlv 95 (297)
T PRK14167 86 ADEDVHGILV 95 (297)
T ss_pred CCCCCCEEEE
Confidence 3 34677776
No 474
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=22.64 E-value=4.4e+02 Score=25.92 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=45.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE---EEecC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT---VQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~---v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+++.++..|......+...+ +-.+..|+++|+++. +.... ....+.+.++++....+|+|+| .+|.+...+++
T Consensus 176 ~~~I~~i~g~~~~~~~~~~R~-~Gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~p~ai~~-~~d~~A~g~~~ 253 (329)
T TIGR01481 176 HKSIAFVGGPLSDSINGEDRL-EGYKEALNKAGIQFGEDLVCEGKYSYDAGYKAFAELKGSLPTAVFV-ASDEMAAGILN 253 (329)
T ss_pred CCeEEEEecCcccccchHHHH-HHHHHHHHHcCCCCCcceEEecCCChHHHHHHHHHHhCCCCCEEEE-cCcHHHHHHHH
Confidence 567887765543221112223 244566777887543 22222 2344566666654445676555 78888888888
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.|.+.
T Consensus 254 al~~~ 258 (329)
T TIGR01481 254 AAMDA 258 (329)
T ss_pred HHHHc
Confidence 88765
No 475
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=22.54 E-value=83 Score=31.40 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=35.5
Q ss_pred EEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHHhhcCCCceEEE-EcCCChH
Q 011517 115 FVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVC-VSGDGIL 179 (484)
Q Consensus 115 iiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~IV~-vGGDGtl 179 (484)
|+.|..+.-.. ..+ +.....|+..|+++.+-.+-.. ..|.++.+.+...+.|+|+| -||+|+.
T Consensus 3 ivaPS~~~~~~-~~l-~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~ 76 (284)
T PF02016_consen 3 IVAPSLSPIDP-ERL-ERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGAN 76 (284)
T ss_dssp EE-SSHHHHCH-HHH-HHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GG
T ss_pred EEeCCCCccCH-HHH-HHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHH
Confidence 56777111122 345 4778889999988877544222 23455666666667888874 6899973
No 476
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.48 E-value=1.1e+02 Score=26.30 Aligned_cols=25 Identities=8% Similarity=0.320 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 90 ~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 90 SVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5777889999999999999988864
No 477
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=22.36 E-value=2e+02 Score=26.61 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=34.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
|-..+...|.+.|.++.++..... .+ +++...++|+||+-||=|...+.
T Consensus 11 ft~nl~~~l~~~g~~v~v~~~~~~-~~----~~~~~~~~d~iils~GPg~p~~~ 59 (187)
T PRK08007 11 FTWNLYQYFCELGADVLVKRNDAL-TL----ADIDALKPQKIVISPGPCTPDEA 59 (187)
T ss_pred cHHHHHHHHHHCCCcEEEEeCCCC-CH----HHHHhcCCCEEEEcCCCCChHHC
Confidence 444677888888998888765432 22 23333479999999999988764
No 478
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=22.27 E-value=3.3e+02 Score=21.05 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=30.1
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
-.+...|...|+.+.+.... .......+.++..++..++++|.+-
T Consensus 18 ~~~~~~Lr~~g~~v~~d~~~--~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 18 KEVAKKLSDAGIRVEVDLRN--EKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHCCCEEEEECCC--CCHHHHHHHHHHcCCCEEEEECcch
Confidence 46777888889988775432 2333334444556888999999764
No 479
>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.
Probab=22.27 E-value=4.1e+02 Score=26.42 Aligned_cols=78 Identities=19% Similarity=0.086 Sum_probs=44.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
..+++.++. +...-+.. .. +.++..+++.|..+++.... ...+....+.++...+.|.|++++..+-.-.++
T Consensus 137 ~~~~v~~l~-~~~~~g~~--~~-~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~~v~~i~~~~~d~ii~~~~~~~~~~~~ 212 (346)
T cd06330 137 KAKTWATIN-PDYAYGQD--AW-ADFKAALKRLRPDVEVVSEQWPKLGAPDYGSEITALLAAKPDAIFSSLWGGDLVTFV 212 (346)
T ss_pred CccEEEEEC-CchHHHHH--HH-HHHHHHHHHhCCCCeecccccCCCCCcccHHHHHHHHhcCCCEEEEecccccHHHHH
Confidence 356676665 33222222 22 46778888885444433221 234555666777667899988876544455666
Q ss_pred HHHhcC
Q 011517 184 NGLLER 189 (484)
Q Consensus 184 ngL~~~ 189 (484)
..+.+.
T Consensus 213 ~~~~~~ 218 (346)
T cd06330 213 RQANAR 218 (346)
T ss_pred HHHHhc
Confidence 666554
No 480
>TIGR01132 pgm phosphoglucomutase, alpha-D-glucose phosphate-specific. This enzyme interconverts alpha-D-glucose-1-P and alpha-D-glucose-6-P.
Probab=22.21 E-value=3.7e+02 Score=29.43 Aligned_cols=51 Identities=27% Similarity=0.378 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 91 SKRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
....|.+.|.+.+.- .-+.+.+-|++.|..|.+. ..+.++|+..|+++..+
T Consensus 206 ~~~~Y~~~l~~~i~~~~i~~~~lkVvvD~~~Ga~~------~~~~~il~~lG~~v~~l 257 (543)
T TIGR01132 206 LVQPYVDGLADIVDMAAIQKAGLRLGVDPLGGSGI------DYWKRIAEKYNLNLTLV 257 (543)
T ss_pred cHHHHHHHHHHhhhhhhhhcCCceEEEeCCCCCcH------HHHHHHHHHcCCCEEEE
Confidence 345677777666542 1223478899999988764 35777888889876543
No 481
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=22.18 E-value=2.3e+02 Score=34.41 Aligned_cols=103 Identities=14% Similarity=0.208 Sum_probs=58.9
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCeE---EEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQF---TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~~---~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
..+++-|.|=..|=-+. ..+-...+..+...-|..+ .-...+...+..++.+.+..-+.|++|++|||||+.-+.
T Consensus 134 ~~~VyGf~~G~~GLl~~~~ieLt~~~V~~i~n~GGt~iLGS~R~kl~~ee~~~~~le~lkkl~Id~LVvIGGDgS~t~A~ 213 (1328)
T PTZ00468 134 SSQLFGFLGGPEGVYSERYRELTEDDINGILNQGGFNIICSGRHKIETEEQMRASLEICEKLKLHGLVVIGGDDSNTNAA 213 (1328)
T ss_pred CCEEEEEccChHHhcCCCeEeCCHHHHHHHHhCCCcccccCcCCCCCCHHHHHHHHHHHHHhCCCEEEEECCchHHHHHH
Confidence 44788787766553322 2222234666666656321 111123344455555555556789999999999986442
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.|.+.-. +...++++--||.==-||+..
T Consensus 214 -~LaEy~~-~~g~~I~VIGIPKTIDNDL~g 241 (1328)
T PTZ00468 214 -VLAEYFK-RNSSSTVVVGCPKTIDGDLKN 241 (1328)
T ss_pred -HHHHHHH-hcCCCeeEEEEeEEEcCCCCC
Confidence 2222100 012358888899888899984
No 482
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=22.12 E-value=3.3e+02 Score=21.13 Aligned_cols=43 Identities=14% Similarity=0.063 Sum_probs=27.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
-++...|+..|+.+.+.... .......+.++..++..++++|.
T Consensus 21 ~~~~~~Lr~~g~~v~~~~~~--~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 21 QKLLNALLANGIRVLYDDRE--RKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHCCCEEEecCCC--cCHhHHHHHHHhCCCCEEEEECC
Confidence 46777788889877765432 22223334444567888999995
No 483
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.06 E-value=4.7e+02 Score=24.28 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
|++||-|..+. . ..++..|+++|.++.++.. . .+ .++||+||+-||
T Consensus 2 ~~~v~~~~~~~-------~-~~~~~~l~~~G~~~~~~~~--~-------~~--~~~~d~iii~G~ 47 (200)
T PRK13143 2 MIVIIDYGVGN-------L-RSVSKALERAGAEVVITSD--P-------EE--ILDADGIVLPGV 47 (200)
T ss_pred eEEEEECCCcc-------H-HHHHHHHHHCCCeEEEECC--H-------HH--HccCCEEEECCC
Confidence 56777666322 2 4678889999988777631 1 12 247999999665
No 484
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=21.93 E-value=2e+02 Score=24.85 Aligned_cols=78 Identities=19% Similarity=0.247 Sum_probs=44.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh---HHHHHH-HHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---HAKEIV-KVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~---~a~~l~-~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+++.+|. +..+.......+ +-.+..+.++|+++......... ...... ..++...+|+|+| +.|.+...+++
T Consensus 9 ~r~i~~i~-~~~~~~~~~~r~-~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pdaii~-~~~~~a~~~~~ 85 (160)
T PF13377_consen 9 HRRIAFIG-GPPNSSVSRERL-EGFREALKEHGIEFEELIFFSDDDSEDAREAQLLWLRRLRPDAIIC-SNDRLALGVLR 85 (160)
T ss_dssp -SSEEEEE-SSTTSHHHHHHH-HHHHHHHHHTTSEEEGEEEEESSSHHHHHHHHHHHHHTCSSSEEEE-SSHHHHHHHHH
T ss_pred CCeEEEEe-cCCCChhHHHHH-HHHHHHHHHCCCCCCeeEeecCCcchhHHHHHHHHHhcCCCcEEEE-cCHHHHHHHHH
Confidence 45676666 444444444334 45677788899876543332222 222111 1222225677666 88999999999
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.|.+.
T Consensus 86 ~l~~~ 90 (160)
T PF13377_consen 86 ALREL 90 (160)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99876
No 485
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=21.89 E-value=7.8e+02 Score=24.30 Aligned_cols=77 Identities=16% Similarity=0.097 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
-+|+.++...... ++. +.+.+...+++.|+++.-..+- ...+....++++...+.|.|++.+.+.-...++..+
T Consensus 141 ~~~v~~v~~~~~~-g~~---~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~~~~~~~~~~~~ 216 (345)
T cd06338 141 PKKVAILYADDPF-SQD---VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAAGPDAVVVAGHFPDAVLLVRQM 216 (345)
T ss_pred CceEEEEecCCcc-cHH---HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhcCCCEEEECCcchhHHHHHHHH
Confidence 4677777644322 222 2346777888889877543322 224556677777767899999888887777788777
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
...
T Consensus 217 ~~~ 219 (345)
T cd06338 217 KEL 219 (345)
T ss_pred HHc
Confidence 654
No 486
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=21.72 E-value=2.2e+02 Score=27.52 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=16.2
Q ss_pred cCCCchhhhhhcccccCCCCCHHHHH
Q 011517 204 PAGTGNGMIKSLLDLVGEPCKASNAI 229 (484)
Q Consensus 204 P~GSgN~~A~sl~~~~g~~~~~~~A~ 229 (484)
+.|+|+.|+-.+....-...++.+|+
T Consensus 202 ~~GaGD~f~aalaa~la~g~~l~eA~ 227 (254)
T TIGR00097 202 THGTGCTLSAAIAANLAKGLSLKEAV 227 (254)
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHH
Confidence 68999999887754222233555554
No 487
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=21.58 E-value=2.8e+02 Score=21.75 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChh--HHHHHHHHh
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQL--HAKEIVKVL 162 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~--~a~~l~~~~ 162 (484)
|-..++.+|...|++++.+.-.... .+.+.+++.
T Consensus 13 yC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~ 48 (80)
T COG0695 13 YCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRG 48 (80)
T ss_pred hHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHh
Confidence 5568889999999999875544444 455566555
No 488
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=21.51 E-value=2.8e+02 Score=25.65 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=39.4
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+|=+.++|- -+.+.++..|+..|+++.-+-| .++.-|..+++.+ .
T Consensus 4 ~igsDhaG~-----~lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V------------------------~ 54 (171)
T PRK12615 4 AIGCDHIVT-----NEKMAVSDFLKSKGYDVIDCGTYDHTRTHYPIFGKKVGEAV------------------------V 54 (171)
T ss_pred EEEeCchhH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCChHHHHHHHHHHH------------------------H
Confidence 344555443 2446889999999987755433 2333333333333 2
Q ss_pred cCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
.. ....||+=||||.+++-+..
T Consensus 55 ~g-------~~d~GIliCGTGiG~siaAN 76 (171)
T PRK12615 55 NG-------QADLGVCICGTGVGINNAVN 76 (171)
T ss_pred cC-------CCCEEEEEcCCcHHHHHHHh
Confidence 22 34678888888888776653
No 489
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=21.50 E-value=3e+02 Score=28.15 Aligned_cols=62 Identities=26% Similarity=0.374 Sum_probs=33.8
Q ss_pred CCCcEEEEEEcCCCCCcchh-hchHHhHHHHHHhc---CCeEEEEecCChhHHHHHHHHhhcCCCceEEEE
Q 011517 107 GRPKRLYIFVNPFGGKKIAS-KIFLDDVKPLLEDA---NIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~-~~~~~~v~p~l~~a---g~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~v 173 (484)
.+||=...=+||++|.+..- +.=.+.+.|..+++ |+++ . .+--|-.+..+...++||+||++
T Consensus 194 ~~PrIaV~gLNPHAGE~G~~G~EE~~iI~PAI~~~~~~G~~v--~---GP~paDt~F~~~~~~~~D~vvaM 259 (320)
T TIGR00557 194 ARPRIAVAGLNPHAGEGGHLGREEIDIIIPALEALRAEGIDL--I---GPLPADTLFHPAALAKYDAVLAM 259 (320)
T ss_pred CCCCEEEEecCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCcc--c---CCCCchhhcccccccCCCEEEEC
Confidence 45665556699999975321 11113556665553 4432 2 33333333334444689999974
No 490
>PRK14321 glmM phosphoglucosamine mutase; Provisional
Probab=21.33 E-value=3.9e+02 Score=28.40 Aligned_cols=47 Identities=11% Similarity=0.014 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
...+.+.|.+.++. .+.+.|++++..|.+. ..+..+|+..|+++..+
T Consensus 149 ~~~Y~~~l~~~~~~---~~~~kVvvD~~~G~~~------~~~~~il~~lg~~v~~i 195 (449)
T PRK14321 149 KEEYIKAALEMIKL---ENSYTVVVDSGNGAGS------ILSPYLQRELGNKVISL 195 (449)
T ss_pred HHHHHHHHHHhcCc---CCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEe
Confidence 45566766666532 3678999999888643 24566778788876543
No 491
>PRK08621 galactose-6-phosphate isomerase subunit LacA; Reviewed
Probab=21.33 E-value=2.9e+02 Score=24.67 Aligned_cols=67 Identities=19% Similarity=0.130 Sum_probs=40.6
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+|=+.++|- -+.+.++..|++.|+++.-+-+ .++.-+..+++. +...
T Consensus 4 ~igsDhaG~-----~lK~~l~~~L~~~G~eV~D~G~~~~~dYpd~a~~va~~------------------------V~~~ 54 (142)
T PRK08621 4 IIGADKAGF-----ELKEVVKDYLEDNKYEVVDVTEEGAEDFVDSTLAVAKE------------------------VNKS 54 (142)
T ss_pred EEEeCcchH-----HHHHHHHHHHHHCCCEEEECCCCCCCCcHHHHHHHHHH------------------------HHcC
Confidence 344555553 2446889999999987654433 233333333333 3222
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcc
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||.+++-+..
T Consensus 55 -------~~~~GIliCGTGiG~siaAN 74 (142)
T PRK08621 55 -------EDNLGIVIDAYGAGSFMVAT 74 (142)
T ss_pred -------CCceEEEEcCCChhhhhhhh
Confidence 35678999999999887764
No 492
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=21.32 E-value=3e+02 Score=23.32 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=39.1
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCC-----hHHHHHH
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDG-----ILVEVVN 184 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDG-----tl~evin 184 (484)
+|++-. ..|.++++ .+.+...|...|++++++...... . .+ +.++|.||++. +.| .+.++++
T Consensus 2 ~Iiy~S--~tGnT~~~-A~~i~~~~~~~g~~v~~~~~~~~~-~----~~--l~~~d~iilgspty~~g~~p~~~~~~f~~ 71 (140)
T TIGR01753 2 LIVYAS--MTGNTEEM-ANIIAEGLKEAGAEVDLLEVADAD-A----ED--LLSYDAVLLGCSTWGDEDLEQDDFEPFFE 71 (140)
T ss_pred EEEEEC--CCcHHHHH-HHHHHHHHHhcCCeEEEEEcccCC-H----HH--HhcCCEEEEEcCCCCCCCCCcchHHHHHH
Confidence 455533 34455543 468888888888888776554321 1 12 24588888775 444 4456666
Q ss_pred HHhc
Q 011517 185 GLLE 188 (484)
Q Consensus 185 gL~~ 188 (484)
-|..
T Consensus 72 ~l~~ 75 (140)
T TIGR01753 72 ELED 75 (140)
T ss_pred Hhhh
Confidence 6543
No 493
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=21.22 E-value=8.8e+02 Score=24.66 Aligned_cols=76 Identities=14% Similarity=0.048 Sum_probs=44.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
|++.++. ....=+++ +.+.+++.|++.|.+....+ +........++.++...+.|.|++.|--.....++..+.
T Consensus 149 k~v~ii~-~~~~yg~~---~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~~~~~~~~~~~r~~~ 224 (366)
T COG0683 149 KRVAIIG-DDYAYGEG---LADAFKAALKALGGEVVVEEVYAPGDTDFSALVAKIKAAGPDAVLVGGYGPDAALFLRQAR 224 (366)
T ss_pred cEEEEEe-CCCCcchh---HHHHHHHHHHhCCCeEEEEEeeCCCCCChHHHHHHHHhcCCCEEEECCCCccchHHHHHHH
Confidence 5555554 44333333 34689999999999732212 222222666777776678886655555455556666665
Q ss_pred cC
Q 011517 188 ER 189 (484)
Q Consensus 188 ~~ 189 (484)
++
T Consensus 225 ~~ 226 (366)
T COG0683 225 EQ 226 (366)
T ss_pred Hc
Confidence 54
No 494
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=21.18 E-value=2.1e+02 Score=24.61 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
.+.++.||..++- +++...|+++|++++++
T Consensus 2 ~itiy~~p~C~t~-------rka~~~L~~~gi~~~~~ 31 (117)
T COG1393 2 MITIYGNPNCSTC-------RKALAWLEEHGIEYTFI 31 (117)
T ss_pred eEEEEeCCCChHH-------HHHHHHHHHcCCCcEEE
Confidence 3678999998863 35677799999999765
No 495
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=21.13 E-value=7.2e+02 Score=24.46 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=43.3
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC---eEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI---QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~---~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.-+++.+++.-.. +...+...+++.+. .+.+.......+...++.++...+.|.||+.+-......++.
T Consensus 128 ~w~~vavl~~~~~--------~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i~~~~~d~vv~~~~~~~~~~~~~ 199 (327)
T cd06382 128 NWKSFTIIYESAE--------GLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEIKNSGDNRIIIDCSADILIELLK 199 (327)
T ss_pred CCcEEEEEecChH--------HHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHHHhcCceEEEEECCHHHHHHHHH
Confidence 4578888876433 22345566666654 333332222226677777877778898888776555556665
Q ss_pred HHhc
Q 011517 185 GLLE 188 (484)
Q Consensus 185 gL~~ 188 (484)
.+.+
T Consensus 200 qa~~ 203 (327)
T cd06382 200 QAQQ 203 (327)
T ss_pred HHHH
Confidence 5543
No 496
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=21.09 E-value=3.2e+02 Score=23.17 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=39.8
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
.-+.-+|+.+|+++...-. .-...++++.+...+.|.|++++-+++--+.+..++..
T Consensus 17 ~~~~~~l~~~G~~vi~lG~--~vp~e~~~~~a~~~~~d~V~iS~~~~~~~~~~~~~~~~ 73 (122)
T cd02071 17 KVIARALRDAGFEVIYTGL--RQTPEEIVEAAIQEDVDVIGLSSLSGGHMTLFPEVIEL 73 (122)
T ss_pred HHHHHHHHHCCCEEEECCC--CCCHHHHHHHHHHcCCCEEEEcccchhhHHHHHHHHHH
Confidence 4677889999987655333 23344666666667899999999998877776665553
No 497
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=21.06 E-value=3e+02 Score=25.40 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=35.6
Q ss_pred hHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigi 202 (484)
+.+.++..|++.|+++.-+-| .++.-|..+++. +... ....||
T Consensus 14 lK~~l~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~------------------------V~~g-------~~~~GI 62 (171)
T TIGR01119 14 VKMEVSEFLKSKGYEVLDVGTYDFTRTHYPIFGKKVGEA------------------------VVSG-------EADLGV 62 (171)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHH------------------------HHcC-------CCCEEE
Confidence 456889999999987755443 233333333333 2222 356788
Q ss_pred ecCCCchhhhhhcc
Q 011517 203 VPAGTGNGMIKSLL 216 (484)
Q Consensus 203 IP~GSgN~~A~sl~ 216 (484)
+=||||.+++-+..
T Consensus 63 liCGTGiG~siaAN 76 (171)
T TIGR01119 63 CICGTGVGINNAVN 76 (171)
T ss_pred EEcCCcHHHHHHHh
Confidence 88888888887653
No 498
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=21.05 E-value=8.1e+02 Score=24.18 Aligned_cols=103 Identities=11% Similarity=0.104 Sum_probs=51.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHh-cCCeEEEEecC--ChhHHH
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLED-ANIQFTVQETT--QQLHAK 156 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~-ag~~~~v~~T~--~~~~a~ 156 (484)
..+.|+..... ..+...+-+++......+++.+|++....-++. +.+.+...+++ .|.++.....- ......
T Consensus 107 ~~~~fr~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~ 181 (332)
T cd06344 107 GPYFFRTVPSN--AVAARALAKYLKKKNKIKKVAIFYNSTSPYSQS---LKQEFTSALLERGGGIVVTPCDLSSPDFNAN 181 (332)
T ss_pred CCcEEEeCCCc--HHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHH---HHHHHHHHHHHhcCCeeeeeccCCCCCCCHH
Confidence 34566543221 234444445444334467898888764411221 23466677877 47654322111 122344
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
..+.++...+.|.|++.+.-+.+..++..+.
T Consensus 182 ~~v~~i~~~~~d~v~~~~~~~~~~~~~~~~~ 212 (332)
T cd06344 182 TAVSQAINNGATVLVLFPDTDTLDKALEVAK 212 (332)
T ss_pred HHHHHHHhcCCCEEEEeCChhHHHHHHHHHH
Confidence 4566665567887776543334444444443
No 499
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=21.04 E-value=1.6e+02 Score=26.85 Aligned_cols=42 Identities=29% Similarity=0.414 Sum_probs=28.3
Q ss_pred hHHHHHHhcC---CeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011517 132 DVKPLLEDAN---IQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 132 ~v~p~l~~ag---~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
.....|++++ ++++++....... ..+.+++|+||+-||-.+.
T Consensus 15 ~~~~~l~~~g~~~~~~~~~~~~~~~~------~~~~~~~dgvil~Gg~~~~ 59 (188)
T cd01741 15 LFEDLLREAGAETIEIDVVDVYAGEL------LPDLDDYDGLVILGGPMSV 59 (188)
T ss_pred hHHHHHHhcCCCCceEEEEecCCCCC------CCCcccCCEEEECCCCccC
Confidence 4556677777 6777766555332 2235689999999997765
No 500
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=21.04 E-value=2.5e+02 Score=25.28 Aligned_cols=83 Identities=19% Similarity=0.177 Sum_probs=43.6
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHHhc
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGLLE 188 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL~~ 188 (484)
++||+ .|..|.++++- +.++..|.. ..++++....... .++.+||.|+++. |+|-+.+.+..++.
T Consensus 2 i~IiY--~S~tGnTe~vA-~~Ia~~l~~--~~~~i~~~~~~~~-------~~l~~~d~ii~gspty~~g~~p~~~~~fl~ 69 (167)
T TIGR01752 2 IGIFY--GTDTGNTEGIA-EKIQKELGE--DDVDVFNIAKASK-------EDLNAYDKLILGTPTWGVGELQEDWEDFLP 69 (167)
T ss_pred EEEEE--ECCCChHHHHH-HHHHHHhCC--CceEEEEcccCCH-------hHHhhCCEEEEEecCCCCCcCcHHHHHHHH
Confidence 45666 45666666543 567766653 2345544433221 1235789888888 78976654444333
Q ss_pred CcCcccccCCcEEEecCC
Q 011517 189 REDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~G 206 (484)
.-........+++++=+|
T Consensus 70 ~l~~~~l~gk~v~~fg~g 87 (167)
T TIGR01752 70 TLEELDFTGKTVALFGLG 87 (167)
T ss_pred HhhcCCCCCCEEEEEecC
Confidence 210001124567665544
Done!