Query 011517
Match_columns 484
No_of_seqs 236 out of 1483
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:46:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s40_A Diacylglycerol kinase; 100.0 5.2E-51 1.8E-55 409.6 25.1 291 107-468 6-298 (304)
2 2qv7_A Diacylglycerol kinase D 100.0 6.4E-47 2.2E-51 385.1 26.3 291 109-468 24-316 (337)
3 2bon_A Lipid kinase; DAG kinas 100.0 2.1E-45 7E-50 373.3 18.9 287 109-468 29-317 (332)
4 2an1_A Putative kinase; struct 99.5 6.6E-14 2.3E-18 138.9 12.1 113 109-238 5-122 (292)
5 1yt5_A Inorganic polyphosphate 99.4 2.2E-12 7.5E-17 125.8 10.8 99 110-238 1-99 (258)
6 1u0t_A Inorganic polyphosphate 99.3 2.2E-11 7.4E-16 121.7 17.3 114 109-239 4-135 (307)
7 2i2c_A Probable inorganic poly 99.2 3.5E-10 1.2E-14 110.9 16.6 95 110-238 1-96 (272)
8 3afo_A NADH kinase POS5; alpha 98.0 3.4E-06 1.2E-10 86.3 5.3 114 107-238 39-174 (388)
9 1z0s_A Probable inorganic poly 96.9 0.0025 8.6E-08 62.1 8.7 96 107-234 27-122 (278)
10 3pfn_A NAD kinase; structural 95.6 0.07 2.4E-06 53.8 11.2 117 104-238 33-167 (365)
11 1o2d_A Alcohol dehydrogenase, 93.6 0.48 1.6E-05 47.8 11.8 102 99-206 32-149 (371)
12 3bfj_A 1,3-propanediol oxidore 93.2 0.47 1.6E-05 48.0 11.2 93 110-205 34-142 (387)
13 3ce9_A Glycerol dehydrogenase; 92.9 0.26 8.8E-06 49.3 8.4 86 110-208 35-123 (354)
14 1sg6_A Pentafunctional AROM po 92.3 0.48 1.7E-05 48.2 9.6 94 109-212 36-148 (393)
15 3okf_A 3-dehydroquinate syntha 91.5 0.69 2.4E-05 47.0 9.7 88 108-205 61-157 (390)
16 3uhj_A Probable glycerol dehyd 91.5 0.27 9.1E-06 50.0 6.6 84 110-206 53-139 (387)
17 1jq5_A Glycerol dehydrogenase; 91.2 0.29 9.8E-06 49.3 6.5 84 110-205 32-118 (370)
18 1rrm_A Lactaldehyde reductase; 91.0 0.32 1.1E-05 49.3 6.6 92 109-205 31-140 (386)
19 3ox4_A Alcohol dehydrogenase 2 90.7 0.81 2.8E-05 46.3 9.3 99 101-206 24-139 (383)
20 1vlj_A NADH-dependent butanol 89.5 1.3 4.6E-05 45.0 9.8 92 110-205 44-151 (407)
21 3qbe_A 3-dehydroquinate syntha 89.1 1 3.6E-05 45.3 8.5 85 110-205 44-137 (368)
22 1ta9_A Glycerol dehydrogenase; 88.6 0.66 2.3E-05 48.1 6.8 83 110-205 92-177 (450)
23 3hl0_A Maleylacetate reductase 87.4 0.58 2E-05 46.9 5.3 83 109-206 34-120 (353)
24 1oj7_A Hypothetical oxidoreduc 86.9 1.1 3.8E-05 45.6 7.2 90 110-205 51-159 (408)
25 2gru_A 2-deoxy-scyllo-inosose 85.8 2.2 7.7E-05 42.7 8.7 87 108-205 33-128 (368)
26 3jzd_A Iron-containing alcohol 85.3 0.74 2.5E-05 46.2 4.9 82 109-205 36-121 (358)
27 1kq3_A Glycerol dehydrogenase; 83.0 0.6 2.1E-05 47.1 3.0 84 110-205 42-126 (376)
28 1xah_A Sadhqs, 3-dehydroquinat 82.0 3.2 0.00011 41.3 7.9 86 110-206 32-125 (354)
29 3jy6_A Transcriptional regulat 78.9 17 0.00059 33.6 11.6 87 107-204 5-92 (276)
30 3clh_A 3-dehydroquinate syntha 78.3 1.9 6.4E-05 42.9 4.7 87 109-205 26-119 (343)
31 3iv7_A Alcohol dehydrogenase I 75.7 1.2 4.2E-05 44.7 2.6 79 110-205 38-120 (364)
32 4grd_A N5-CAIR mutase, phospho 75.2 24 0.00082 31.3 10.4 75 110-189 13-91 (173)
33 3o74_A Fructose transport syst 73.3 11 0.00036 34.8 8.4 87 109-204 2-89 (272)
34 3l6u_A ABC-type sugar transpor 72.8 18 0.00062 33.6 10.0 90 107-205 6-97 (293)
35 3l49_A ABC sugar (ribose) tran 72.8 20 0.00069 33.2 10.3 90 108-206 4-95 (291)
36 3m9w_A D-xylose-binding peripl 71.3 29 0.001 32.6 11.2 87 110-205 3-91 (313)
37 1pfk_A Phosphofructokinase; tr 71.1 7.1 0.00024 38.4 6.7 53 154-214 82-134 (320)
38 3egc_A Putative ribose operon 70.4 16 0.00053 34.1 8.9 90 107-206 6-96 (291)
39 3tb6_A Arabinose metabolism tr 70.1 30 0.001 32.0 10.8 86 110-204 16-106 (298)
40 3rf7_A Iron-containing alcohol 69.8 9.9 0.00034 38.2 7.6 88 109-205 53-159 (375)
41 3lft_A Uncharacterized protein 69.0 21 0.00072 33.5 9.6 77 107-188 131-207 (295)
42 3ors_A N5-carboxyaminoimidazol 68.3 37 0.0013 29.8 9.9 59 130-188 19-81 (163)
43 1pyo_A Caspase-2; apoptosis, c 67.8 27 0.00093 30.7 9.2 64 101-164 24-94 (167)
44 3g1w_A Sugar ABC transporter; 67.3 20 0.00068 33.6 9.0 90 108-206 3-95 (305)
45 8abp_A L-arabinose-binding pro 67.0 31 0.001 32.2 10.3 86 110-204 3-89 (306)
46 3gbv_A Putative LACI-family tr 66.4 20 0.00069 33.4 8.8 91 107-205 6-102 (304)
47 3f6r_A Flavodoxin; FMN binding 66.3 16 0.00053 30.8 7.2 89 110-210 2-96 (148)
48 2iks_A DNA-binding transcripti 66.2 24 0.00083 32.9 9.3 89 107-204 18-107 (293)
49 3h75_A Periplasmic sugar-bindi 66.0 36 0.0012 32.7 10.8 89 110-207 4-96 (350)
50 1zxx_A 6-phosphofructokinase; 65.9 7.4 0.00025 38.2 5.5 53 153-213 80-132 (319)
51 3brq_A HTH-type transcriptiona 65.8 42 0.0014 30.9 10.9 88 107-204 17-108 (296)
52 2fep_A Catabolite control prot 65.8 35 0.0012 31.8 10.4 88 107-204 14-102 (289)
53 1ujn_A Dehydroquinate synthase 65.2 17 0.00057 36.0 8.1 84 109-205 28-118 (348)
54 3d8u_A PURR transcriptional re 65.2 24 0.00082 32.4 8.9 86 108-203 2-88 (275)
55 2fvy_A D-galactose-binding per 65.0 38 0.0013 31.6 10.5 87 110-205 3-92 (309)
56 1o4v_A Phosphoribosylaminoimid 64.8 46 0.0016 29.7 10.0 71 129-208 28-102 (183)
57 4h1h_A LMO1638 protein; MCCF-l 64.8 8.5 0.00029 37.8 5.9 67 112-179 14-92 (327)
58 3k4h_A Putative transcriptiona 64.6 21 0.00073 33.1 8.5 87 107-203 6-98 (292)
59 3qk7_A Transcriptional regulat 64.3 16 0.00055 34.3 7.6 89 107-204 4-95 (294)
60 2fqx_A Membrane lipoprotein TM 64.0 61 0.0021 30.9 11.9 89 108-204 3-93 (318)
61 2h31_A Multifunctional protein 63.9 1.1E+02 0.0037 31.1 13.8 75 110-189 266-345 (425)
62 2fn9_A Ribose ABC transporter, 63.5 37 0.0012 31.4 10.0 87 109-204 2-90 (290)
63 1xmp_A PURE, phosphoribosylami 63.3 43 0.0015 29.6 9.4 73 111-188 13-89 (170)
64 3lp6_A Phosphoribosylaminoimid 62.2 40 0.0014 29.9 9.0 73 111-188 9-85 (174)
65 3kjx_A Transcriptional regulat 62.2 59 0.002 31.1 11.5 87 107-203 66-153 (344)
66 2qh8_A Uncharacterized protein 62.1 26 0.00089 33.1 8.7 76 107-187 138-213 (302)
67 3c3k_A Alanine racemase; struc 62.0 42 0.0015 31.0 10.1 86 107-203 6-92 (285)
68 2x7x_A Sensor protein; transfe 61.9 35 0.0012 32.4 9.7 88 107-204 4-94 (325)
69 2lnd_A De novo designed protei 61.8 24 0.00081 27.1 6.4 58 99-162 40-98 (112)
70 3k9c_A Transcriptional regulat 61.8 37 0.0013 31.6 9.7 86 107-204 10-95 (289)
71 1u11_A PURE (N5-carboxyaminoim 61.3 57 0.0019 29.1 9.9 74 110-188 22-99 (182)
72 3p45_A Caspase-6; protease, hu 61.3 27 0.00091 31.2 7.9 69 103-171 37-115 (179)
73 3oow_A Phosphoribosylaminoimid 61.2 66 0.0023 28.3 10.2 73 111-188 7-83 (166)
74 2iuf_A Catalase; oxidoreductas 61.1 2.7 9.1E-05 45.6 1.5 64 110-176 530-593 (688)
75 2rgy_A Transcriptional regulat 60.5 28 0.00095 32.4 8.5 88 107-204 6-97 (290)
76 3h5o_A Transcriptional regulat 60.2 56 0.0019 31.2 10.9 87 107-203 60-147 (339)
77 3dbi_A Sugar-binding transcrip 60.1 58 0.002 31.0 11.0 90 107-205 59-151 (338)
78 3trh_A Phosphoribosylaminoimid 60.1 57 0.0019 28.8 9.6 73 111-188 8-84 (169)
79 3e4c_A Caspase-1; zymogen, inf 59.9 30 0.001 33.5 8.7 71 93-163 41-117 (302)
80 3kuu_A Phosphoribosylaminoimid 59.8 59 0.002 28.8 9.7 75 109-188 12-90 (174)
81 3o1i_D Periplasmic protein TOR 59.8 20 0.00067 33.5 7.3 87 107-203 3-93 (304)
82 3e3m_A Transcriptional regulat 59.8 54 0.0019 31.5 10.8 87 107-203 68-155 (355)
83 2hig_A 6-phospho-1-fructokinas 58.7 8.7 0.0003 40.0 4.8 98 111-213 131-234 (487)
84 3opy_A 6-phosphofructo-1-kinas 58.5 11 0.00036 42.5 5.7 60 154-214 676-735 (989)
85 1qtn_A Caspase-8; apoptosis, d 58.5 42 0.0014 29.4 8.6 68 103-170 16-100 (164)
86 3uug_A Multiple sugar-binding 58.4 45 0.0016 31.4 9.8 88 109-205 3-92 (330)
87 2h54_A Caspase-1; allosteric s 58.1 79 0.0027 27.9 10.5 101 110-210 43-170 (178)
88 4b4k_A N5-carboxyaminoimidazol 57.6 67 0.0023 28.6 9.7 72 112-188 25-100 (181)
89 1dbq_A Purine repressor; trans 57.4 65 0.0022 29.6 10.5 89 107-204 5-94 (289)
90 4eys_A MCCC family protein; MC 57.1 17 0.00057 36.0 6.5 72 113-186 8-93 (346)
91 4a3s_A 6-phosphofructokinase; 57.1 14 0.0005 36.1 5.9 49 157-213 84-132 (319)
92 3clk_A Transcription regulator 55.8 30 0.001 32.1 7.8 89 107-205 6-96 (290)
93 3e61_A Putative transcriptiona 55.5 41 0.0014 30.8 8.7 87 107-205 6-94 (277)
94 3brs_A Periplasmic binding pro 55.2 34 0.0012 31.6 8.1 88 108-204 4-97 (289)
95 3n7t_A Macrophage binding prot 55.1 49 0.0017 30.9 9.0 41 164-207 103-148 (247)
96 2hsg_A Glucose-resistance amyl 55.1 69 0.0024 30.3 10.5 88 107-204 58-146 (332)
97 2dko_A Caspase-3; low barrier 54.9 45 0.0016 28.5 8.1 57 107-163 13-76 (146)
98 3opy_B 6-phosphofructo-1-kinas 54.8 16 0.00055 40.9 6.3 59 155-214 651-709 (941)
99 3ej6_A Catalase-3; heme, hydro 54.3 9.1 0.00031 41.5 4.2 85 110-206 538-639 (688)
100 3gv0_A Transcriptional regulat 53.6 42 0.0015 31.1 8.5 89 107-204 6-96 (288)
101 3lkv_A Uncharacterized conserv 53.6 50 0.0017 31.3 9.1 77 107-188 138-214 (302)
102 2o20_A Catabolite control prot 53.6 59 0.002 30.9 9.8 88 107-204 61-149 (332)
103 3bil_A Probable LACI-family tr 53.5 47 0.0016 32.0 9.1 87 108-204 65-152 (348)
104 3l7n_A Putative uncharacterize 53.4 17 0.00057 33.6 5.5 57 110-178 1-57 (236)
105 3rot_A ABC sugar transporter, 53.1 42 0.0014 31.3 8.4 67 131-204 23-93 (297)
106 1oi4_A Hypothetical protein YH 53.0 10 0.00035 33.9 3.8 95 107-214 21-134 (193)
107 2rjo_A Twin-arginine transloca 52.5 39 0.0013 32.1 8.3 89 107-204 3-95 (332)
108 3fni_A Putative diflavin flavo 52.2 45 0.0016 28.6 7.8 61 109-174 4-64 (159)
109 2vk2_A YTFQ, ABC transporter p 52.2 43 0.0015 31.3 8.4 87 109-204 2-90 (306)
110 2lqo_A Putative glutaredoxin R 52.1 24 0.00082 27.6 5.4 35 129-163 16-50 (92)
111 1zl0_A Hypothetical protein PA 51.9 23 0.00078 34.5 6.3 65 111-178 18-93 (311)
112 3rg8_A Phosphoribosylaminoimid 51.8 1E+02 0.0036 26.8 9.8 60 130-189 18-82 (159)
113 3dfz_A SIRC, precorrin-2 dehyd 51.0 77 0.0026 29.1 9.5 83 133-215 46-157 (223)
114 3o8o_B 6-phosphofructokinase s 50.7 15 0.00051 40.4 5.2 59 155-214 473-531 (766)
115 1jx6_A LUXP protein; protein-l 50.7 1.6E+02 0.0056 27.6 12.5 57 131-188 64-126 (342)
116 1mkz_A Molybdenum cofactor bio 50.5 89 0.003 27.3 9.5 58 131-188 31-96 (172)
117 3o8l_A 6-phosphofructokinase, 50.4 17 0.00057 40.0 5.5 59 156-214 99-172 (762)
118 3lkb_A Probable branched-chain 50.3 94 0.0032 30.0 10.8 77 109-189 143-221 (392)
119 3zyw_A Glutaredoxin-3; metal b 50.1 28 0.00097 28.0 5.7 61 109-176 15-80 (111)
120 3o8l_A 6-phosphofructokinase, 50.0 17 0.00058 40.0 5.5 60 154-214 477-536 (762)
121 1tjy_A Sugar transport protein 50.0 50 0.0017 31.2 8.5 87 109-204 3-92 (316)
122 3kke_A LACI family transcripti 49.7 88 0.003 29.1 10.1 88 107-204 13-101 (303)
123 3bbl_A Regulatory protein of L 49.1 40 0.0014 31.2 7.5 65 131-203 28-93 (287)
124 3snr_A Extracellular ligand-bi 48.9 64 0.0022 30.5 9.2 78 108-189 134-213 (362)
125 2h3h_A Sugar ABC transporter, 48.4 67 0.0023 30.1 9.1 82 112-203 4-88 (313)
126 2ql9_A Caspase-7; cysteine pro 48.4 58 0.002 28.8 7.9 58 106-163 40-104 (173)
127 3hno_A Pyrophosphate-dependent 48.3 15 0.0005 37.5 4.4 60 152-213 90-149 (419)
128 3o8o_A 6-phosphofructokinase s 48.3 21 0.00073 39.3 5.9 60 154-214 471-530 (787)
129 1rw7_A YDR533CP; alpha-beta sa 48.2 51 0.0017 30.4 8.0 46 165-214 97-147 (243)
130 3od5_A Caspase-6; caspase doma 48.1 45 0.0015 31.8 7.7 111 105-215 16-149 (278)
131 1t35_A Hypothetical protein YV 48.0 20 0.00067 32.3 4.8 48 153-207 20-68 (191)
132 3loq_A Universal stress protei 47.9 1.7E+02 0.0058 27.0 12.8 71 130-207 216-292 (294)
133 2q5c_A NTRC family transcripti 47.6 98 0.0034 27.6 9.6 65 110-186 95-159 (196)
134 3ksm_A ABC-type sugar transpor 47.6 50 0.0017 30.0 7.9 69 131-206 20-93 (276)
135 4ehd_A Caspase-3; caspase, apo 47.1 35 0.0012 32.6 6.7 113 103-215 37-172 (277)
136 2ab0_A YAJL; DJ-1/THIJ superfa 46.9 17 0.00057 32.8 4.2 97 109-213 2-115 (205)
137 3hcw_A Maltose operon transcri 46.6 36 0.0012 31.7 6.8 89 107-204 5-98 (295)
138 3sbx_A Putative uncharacterize 45.5 21 0.00071 32.2 4.5 46 154-206 32-78 (189)
139 4a26_A Putative C-1-tetrahydro 45.4 1.4E+02 0.0049 28.7 10.7 79 90-172 13-101 (300)
140 3huu_A Transcription regulator 45.0 45 0.0015 31.2 7.2 67 131-205 47-114 (305)
141 2iz6_A Molybdenum cofactor car 44.7 32 0.0011 30.6 5.6 46 154-206 33-79 (176)
142 3miz_A Putative transcriptiona 44.5 64 0.0022 29.9 8.2 71 107-178 11-82 (301)
143 1qpz_A PURA, protein (purine n 44.2 1.4E+02 0.005 28.1 10.9 88 107-203 56-144 (340)
144 4evq_A Putative ABC transporte 44.1 1.1E+02 0.0036 29.3 10.0 78 108-189 150-229 (375)
145 2ywx_A Phosphoribosylaminoimid 44.1 1.4E+02 0.0048 25.9 9.4 57 130-188 15-74 (157)
146 3kkl_A Probable chaperone prot 43.8 67 0.0023 29.8 8.0 40 165-207 97-141 (244)
147 2ejb_A Probable aromatic acid 43.8 52 0.0018 29.4 7.0 41 110-155 2-42 (189)
148 1nw9_B Caspase 9, apoptosis-re 43.7 87 0.003 29.6 9.0 66 104-169 15-90 (277)
149 1vhq_A Enhancing lycopene bios 43.3 56 0.0019 29.8 7.4 47 165-215 89-150 (232)
150 1byk_A Protein (trehalose oper 43.3 82 0.0028 28.3 8.6 67 109-177 2-69 (255)
151 4e08_A DJ-1 beta; flavodoxin-l 42.9 28 0.00096 30.7 5.0 98 107-213 3-115 (190)
152 3d02_A Putative LACI-type tran 42.7 1E+02 0.0035 28.4 9.4 86 109-203 4-92 (303)
153 3sr3_A Microcin immunity prote 42.7 31 0.0011 33.9 5.7 68 110-178 13-92 (336)
154 2qip_A Protein of unknown func 42.5 85 0.0029 27.0 8.1 25 165-189 107-131 (165)
155 1jye_A Lactose operon represso 42.3 1.7E+02 0.0059 27.8 11.2 67 107-175 59-127 (349)
156 1m72_A Caspase-1; caspase, cys 42.3 80 0.0027 29.9 8.4 112 103-214 25-158 (272)
157 1f4p_A Flavodoxin; electron tr 42.1 30 0.001 28.8 4.9 84 111-208 2-95 (147)
158 3hs3_A Ribose operon repressor 42.0 55 0.0019 30.1 7.2 66 107-174 8-75 (277)
159 2j32_A Caspase-3; Pro-caspase3 41.9 84 0.0029 29.3 8.4 108 107-214 13-143 (250)
160 2cof_A Protein KIAA1914; PH do 41.6 23 0.00077 27.9 3.8 28 79-106 76-103 (107)
161 3rpe_A MDAB, modulator of drug 41.5 45 0.0015 30.6 6.3 43 109-151 25-70 (218)
162 1y5e_A Molybdenum cofactor bio 41.5 1.4E+02 0.0048 25.8 9.3 57 131-187 34-98 (169)
163 3opy_A 6-phosphofructo-1-kinas 40.8 19 0.00066 40.4 4.1 57 156-213 294-366 (989)
164 2fp3_A Caspase NC; apoptosis, 40.7 92 0.0032 30.2 8.7 112 103-214 53-192 (316)
165 3qua_A Putative uncharacterize 40.0 25 0.00087 31.9 4.2 46 154-206 41-87 (199)
166 3o8o_B 6-phosphofructokinase s 40.0 29 0.00098 38.2 5.3 57 158-214 90-161 (766)
167 3tla_A MCCF; serine protease, 39.9 40 0.0014 33.7 6.0 69 109-178 42-122 (371)
168 2dri_A D-ribose-binding protei 39.9 1.2E+02 0.004 27.6 9.1 66 131-203 21-88 (271)
169 3o8o_A 6-phosphofructokinase s 39.9 19 0.00066 39.6 4.0 57 157-213 90-161 (787)
170 2rk3_A Protein DJ-1; parkinson 39.8 48 0.0017 29.3 6.1 97 109-214 3-115 (197)
171 1wjm_A Beta-spectrin III; PH d 39.5 26 0.00089 28.3 3.9 27 80-106 93-119 (123)
172 3h11_B Caspase-8; cell death, 39.4 2.3E+02 0.0079 26.6 11.2 113 103-215 10-153 (271)
173 3cwq_A Para family chromosome 39.4 78 0.0027 28.2 7.6 45 112-159 2-46 (209)
174 3jvd_A Transcriptional regulat 39.3 57 0.002 31.1 7.0 67 107-175 62-128 (333)
175 3eaf_A ABC transporter, substr 39.0 1.4E+02 0.0049 28.8 10.1 78 108-188 140-221 (391)
176 3ipz_A Monothiol glutaredoxin- 39.0 87 0.003 24.8 7.0 66 109-176 17-82 (109)
177 3qmx_A Glutaredoxin A, glutare 38.5 1.4E+02 0.0047 23.2 8.2 43 108-157 14-56 (99)
178 1ydh_A AT5G11950; structural g 38.3 32 0.0011 31.6 4.7 44 154-204 29-73 (216)
179 4e5s_A MCCFLIKE protein (BA_56 38.3 53 0.0018 32.2 6.6 70 109-179 11-92 (331)
180 1fy2_A Aspartyl dipeptidase; s 38.2 86 0.0029 28.7 7.7 69 108-188 30-99 (229)
181 2hqb_A Transcriptional activat 37.5 61 0.0021 30.5 6.8 88 108-203 4-93 (296)
182 3td9_A Branched chain amino ac 37.2 87 0.003 29.9 8.1 79 108-189 148-227 (366)
183 3en0_A Cyanophycinase; serine 37.0 38 0.0013 32.6 5.2 63 110-178 57-122 (291)
184 2nn3_C Caspase-1; cysteine pro 36.6 82 0.0028 30.5 7.6 111 103-213 53-185 (310)
185 3sir_A Caspase; hydrolase; 2.6 36.2 60 0.0021 30.5 6.4 64 106-169 16-88 (259)
186 2f48_A Diphosphate--fructose-6 36.2 22 0.00076 37.5 3.6 104 109-214 104-212 (555)
187 2ioy_A Periplasmic sugar-bindi 36.1 1.5E+02 0.0051 27.0 9.3 66 131-203 21-88 (283)
188 4dzz_A Plasmid partitioning pr 35.9 1.2E+02 0.0043 26.1 8.3 47 111-159 2-48 (206)
189 1u5d_A SKAP55, SRC kinase-asso 35.7 25 0.00087 27.2 3.2 26 80-105 81-106 (108)
190 4hcj_A THIJ/PFPI domain protei 35.7 12 0.00041 33.2 1.3 73 133-213 27-116 (177)
191 3gyb_A Transcriptional regulat 35.1 54 0.0018 30.0 5.9 69 107-178 3-71 (280)
192 1gud_A ALBP, D-allose-binding 35.0 1.4E+02 0.0049 27.3 9.0 66 131-203 21-90 (288)
193 2i0f_A 6,7-dimethyl-8-ribityll 34.9 71 0.0024 27.8 6.1 94 110-206 13-121 (157)
194 2p0d_A RHO GTPase-activating p 34.9 18 0.00061 30.0 2.2 27 80-106 100-126 (129)
195 3cxb_B Pleckstrin homology dom 34.9 26 0.00088 28.2 3.1 27 80-106 77-103 (112)
196 4a5o_A Bifunctional protein fo 34.7 2.8E+02 0.0097 26.4 10.9 79 90-172 12-99 (286)
197 3hbm_A UDP-sugar hydrolase; PS 34.3 81 0.0028 30.0 7.0 28 166-205 225-252 (282)
198 1e5d_A Rubredoxin\:oxygen oxid 34.2 2.3E+02 0.0078 27.5 10.8 77 91-174 235-311 (402)
199 3opy_B 6-phosphofructo-1-kinas 34.1 21 0.00073 40.0 3.2 57 157-214 267-339 (941)
200 2a33_A Hypothetical protein; s 34.1 36 0.0012 31.3 4.3 46 154-206 33-79 (215)
201 2d9y_A Pleckstrin homology dom 34.1 29 0.00099 27.5 3.3 26 80-105 85-110 (117)
202 2vvr_A Ribose-5-phosphate isom 33.7 1.2E+02 0.0041 26.1 7.3 68 113-216 4-77 (149)
203 2pjk_A 178AA long hypothetical 33.5 1.9E+02 0.0065 25.3 8.9 58 131-188 43-108 (178)
204 1rcu_A Conserved hypothetical 33.5 43 0.0015 30.2 4.6 46 153-205 45-90 (195)
205 4eyg_A Twin-arginine transloca 33.5 1.5E+02 0.0052 28.0 9.2 78 108-189 138-217 (368)
206 1tq8_A Hypothetical protein RV 33.4 1.6E+02 0.0056 24.6 8.4 69 131-206 84-159 (163)
207 2q9u_A A-type flavoprotein; fl 33.3 2E+02 0.0068 28.2 10.2 61 108-174 255-315 (414)
208 3g85_A Transcriptional regulat 33.2 55 0.0019 30.1 5.6 89 107-204 9-98 (289)
209 1eaz_A Tandem PH domain contai 33.1 34 0.0012 27.4 3.7 27 80-106 87-113 (125)
210 1v95_A Nuclear receptor coacti 32.7 57 0.002 27.5 4.9 70 107-185 6-75 (130)
211 3l07_A Bifunctional protein fo 32.7 2.9E+02 0.01 26.3 10.6 79 90-172 11-98 (285)
212 2pju_A Propionate catabolism o 32.7 1.8E+02 0.0061 26.6 8.9 83 109-215 106-188 (225)
213 3ngx_A Bifunctional protein fo 32.5 2.8E+02 0.0094 26.3 10.3 80 89-172 7-90 (276)
214 3rcp_A Pleckstrin homology dom 32.5 33 0.0011 26.6 3.3 27 80-106 69-95 (103)
215 1pea_A Amidase operon; gene re 32.5 2.4E+02 0.008 27.1 10.4 76 109-188 140-219 (385)
216 2qu7_A Putative transcriptiona 32.3 91 0.0031 28.6 7.0 69 107-178 6-75 (288)
217 2uyg_A 3-dehydroquinate dehydr 32.3 1.4E+02 0.0046 25.8 7.2 44 129-172 29-72 (149)
218 1edz_A 5,10-methylenetetrahydr 32.2 2.3E+02 0.0077 27.5 9.9 80 90-173 12-98 (320)
219 3iwt_A 178AA long hypothetical 32.2 1.1E+02 0.0036 26.7 7.0 58 131-188 43-108 (178)
220 3op6_A Uncharacterized protein 32.1 37 0.0013 29.0 3.8 50 131-180 5-67 (152)
221 3hut_A Putative branched-chain 32.0 2.5E+02 0.0085 26.4 10.4 77 108-189 138-217 (358)
222 2yan_A Glutaredoxin-3; oxidore 31.4 1.6E+02 0.0053 22.8 7.3 34 111-151 18-56 (105)
223 3l4e_A Uncharacterized peptida 31.2 49 0.0017 30.0 4.7 54 129-187 45-98 (206)
224 1fgy_A GRP1; PH domain, signal 31.2 36 0.0012 27.2 3.5 27 80-106 96-122 (127)
225 3hly_A Flavodoxin-like domain; 31.2 1E+02 0.0035 26.2 6.6 58 111-174 2-59 (161)
226 3sg0_A Extracellular ligand-bi 31.0 1.7E+02 0.0057 27.8 9.0 78 108-189 158-237 (386)
227 1mjh_A Protein (ATP-binding do 30.8 84 0.0029 26.1 6.0 68 132-206 87-160 (162)
228 3lop_A Substrate binding perip 30.8 2.3E+02 0.0078 26.8 9.9 77 109-189 141-219 (364)
229 1u9c_A APC35852; structural ge 30.5 63 0.0022 29.1 5.4 79 132-214 33-138 (224)
230 1v5u_A SBF1, SET binding facto 30.3 31 0.0011 27.2 2.9 26 80-105 87-112 (117)
231 2da0_A 130-kDa phosphatidylino 30.3 42 0.0014 26.7 3.7 26 80-105 77-102 (114)
232 3kip_A 3-dehydroquinase, type 30.1 1.9E+02 0.0065 25.3 7.9 65 108-172 13-89 (167)
233 1pls_A Pleckstrin homology dom 30.0 47 0.0016 26.1 3.9 26 80-105 77-102 (113)
234 2rlo_A Centaurin-gamma 1; spli 29.9 32 0.0011 28.1 2.9 25 80-104 100-124 (128)
235 3rfq_A Pterin-4-alpha-carbinol 29.8 96 0.0033 27.6 6.3 58 131-188 52-116 (185)
236 1ykg_A SIR-FP, sulfite reducta 29.7 31 0.0011 29.7 3.0 86 110-206 10-102 (167)
237 1usg_A Leucine-specific bindin 29.7 1.5E+02 0.005 27.8 8.2 77 109-189 138-216 (346)
238 1fao_A Dual adaptor of phospho 29.6 45 0.0015 26.8 3.8 27 80-106 88-114 (126)
239 1czn_A Flavodoxin; FMN binding 29.5 85 0.0029 26.6 5.8 86 110-206 1-89 (169)
240 1v89_A Hypothetical protein KI 29.4 42 0.0014 26.4 3.5 27 79-105 87-113 (118)
241 1weh_A Conserved hypothetical 29.4 49 0.0017 29.0 4.2 46 153-205 20-65 (171)
242 1jmv_A USPA, universal stress 29.0 86 0.0029 25.3 5.6 69 131-206 67-139 (141)
243 3r7f_A Aspartate carbamoyltran 28.9 1.5E+02 0.0053 28.5 8.0 87 113-215 65-165 (304)
244 1fmt_A Methionyl-tRNA FMet for 28.8 1E+02 0.0035 29.9 6.8 69 110-181 28-96 (314)
245 3kht_A Response regulator; PSI 28.8 1.2E+02 0.004 24.3 6.4 71 129-205 17-89 (144)
246 3s5p_A Ribose 5-phosphate isom 28.8 1.2E+02 0.0041 26.6 6.5 68 113-216 24-97 (166)
247 1wgq_A FYVE, rhogef and PH dom 28.5 50 0.0017 25.8 3.8 26 79-104 78-103 (109)
248 1uqr_A 3-dehydroquinate dehydr 28.4 1.4E+02 0.0049 25.8 6.8 42 130-172 32-73 (154)
249 2i5f_A Pleckstrin; PH domain, 28.4 35 0.0012 26.5 2.9 24 80-103 85-108 (109)
250 2d9x_A Oxysterol binding prote 28.4 43 0.0015 26.9 3.4 25 80-104 80-104 (120)
251 3h11_A CAsp8 and FADD-like apo 28.2 2.7E+02 0.0091 26.2 9.5 94 105-205 38-151 (272)
252 4b4u_A Bifunctional protein fo 28.0 3E+02 0.01 26.5 9.8 80 89-172 29-117 (303)
253 3q0i_A Methionyl-tRNA formyltr 28.0 81 0.0028 30.6 5.9 69 109-180 31-99 (318)
254 2c2x_A Methylenetetrahydrofola 27.9 3.4E+02 0.012 25.8 10.1 79 90-172 10-96 (281)
255 1gqo_A Dehydroquinase; dehydra 27.8 1.3E+02 0.0045 25.6 6.4 42 130-172 31-72 (143)
256 3l18_A Intracellular protease 27.7 37 0.0013 29.1 3.1 87 109-207 2-105 (168)
257 2c4w_A 3-dehydroquinate dehydr 27.5 1.2E+02 0.0042 26.7 6.3 43 130-172 40-84 (176)
258 2lul_A Tyrosine-protein kinase 27.3 47 0.0016 28.7 3.7 27 80-106 97-123 (164)
259 3hcw_A Maltose operon transcri 27.2 2.1E+02 0.0071 26.3 8.6 78 109-189 131-214 (295)
260 3ipc_A ABC transporter, substr 27.1 1.7E+02 0.0059 27.5 8.2 78 108-189 137-216 (356)
261 2dn6_A KIAA0640 protein; PH do 27.0 47 0.0016 26.1 3.4 26 80-105 79-104 (115)
262 2is8_A Molybdopterin biosynthe 27.0 93 0.0032 26.8 5.6 58 131-188 24-89 (164)
263 3rht_A (gatase1)-like protein; 27.0 37 0.0013 32.1 3.2 54 109-173 4-57 (259)
264 2vrn_A Protease I, DR1199; cys 26.7 43 0.0015 29.3 3.4 98 108-214 8-124 (190)
265 1wl8_A GMP synthase [glutamine 26.5 1.7E+02 0.0058 25.3 7.4 40 131-176 14-53 (189)
266 3aj4_A Pleckstrin homology dom 26.5 45 0.0015 26.2 3.2 24 80-103 87-110 (112)
267 3pzy_A MOG; ssgcid, seattle st 26.5 1.1E+02 0.0037 26.5 5.9 58 131-189 30-94 (164)
268 2vvp_A Ribose-5-phosphate isom 26.2 94 0.0032 27.2 5.3 67 114-216 7-80 (162)
269 3h8q_A Thioredoxin reductase 3 26.1 1.6E+02 0.0055 23.2 6.6 35 110-151 17-51 (114)
270 3p2o_A Bifunctional protein fo 26.0 3.2E+02 0.011 26.0 9.5 79 90-172 11-97 (285)
271 1v5p_A Pleckstrin homology dom 26.0 48 0.0016 27.4 3.3 25 80-104 96-120 (126)
272 3cs3_A Sugar-binding transcrip 25.9 1.4E+02 0.0049 27.0 7.2 81 107-203 6-86 (277)
273 3cs3_A Sugar-binding transcrip 25.8 3.6E+02 0.012 24.2 11.3 78 109-189 118-199 (277)
274 3g23_A Peptidase U61, LD-carbo 25.8 1E+02 0.0034 29.2 6.0 72 111-186 4-88 (274)
275 2rsg_A Collagen type IV alpha- 25.8 24 0.00082 26.9 1.3 23 80-102 70-92 (94)
276 3tqq_A Methionyl-tRNA formyltr 25.8 74 0.0025 30.9 5.1 70 109-181 26-95 (314)
277 1byk_A Protein (trehalose oper 25.7 1.1E+02 0.0037 27.5 6.1 79 109-189 115-194 (255)
278 4hjh_A Phosphomannomutase; str 25.7 2.1E+02 0.0073 29.2 9.0 80 91-177 158-249 (481)
279 2a9v_A GMP synthase; structura 25.7 50 0.0017 29.8 3.7 56 110-181 14-70 (212)
280 3gx8_A Monothiol glutaredoxin- 25.5 2.3E+02 0.0078 22.8 7.5 48 129-176 33-83 (121)
281 2cod_A Centaurin-delta 1; ARF 25.4 46 0.0016 26.3 3.1 26 80-105 75-100 (115)
282 1dro_A Beta-spectrin; cytoskel 25.3 44 0.0015 26.9 3.0 25 80-104 95-119 (122)
283 3pdk_A Phosphoglucosamine muta 25.3 1.3E+02 0.0044 30.8 7.2 51 90-148 175-225 (469)
284 3mt0_A Uncharacterized protein 25.3 3.9E+02 0.013 24.4 11.0 105 90-208 21-131 (290)
285 3uw2_A Phosphoglucomutase/phos 25.2 1.4E+02 0.0047 30.8 7.4 77 92-177 178-267 (485)
286 3ttv_A Catalase HPII; heme ori 25.1 33 0.0011 37.5 2.6 85 110-207 601-702 (753)
287 1unq_A RAC-alpha serine/threon 25.1 64 0.0022 25.8 4.0 27 79-105 85-111 (125)
288 3pp2_A RHO GTPase-activating p 25.1 52 0.0018 26.9 3.4 25 80-104 99-123 (124)
289 3he8_A Ribose-5-phosphate isom 25.1 1.2E+02 0.0042 26.0 5.8 57 129-216 14-76 (149)
290 3h5t_A Transcriptional regulat 25.0 2.4E+02 0.0083 26.8 8.9 90 107-204 66-158 (366)
291 2g2c_A Putative molybdenum cof 25.0 97 0.0033 26.8 5.3 56 132-187 29-95 (167)
292 1s3a_A NADH-ubiquinone oxidore 24.9 37 0.0013 27.1 2.3 44 109-152 19-62 (102)
293 1btn_A Beta-spectrin; signal t 24.8 45 0.0015 25.7 2.9 22 80-101 84-105 (106)
294 1di6_A MOGA, molybdenum cofact 24.7 2.3E+02 0.0077 25.3 7.9 59 131-189 26-94 (195)
295 1r7h_A NRDH-redoxin; thioredox 24.7 1.8E+02 0.0061 20.2 6.7 36 112-154 3-38 (75)
296 3o21_A Glutamate receptor 3; p 24.7 2.3E+02 0.0079 27.5 8.8 75 109-188 130-207 (389)
297 2y7b_A Actin-binding protein a 24.7 69 0.0024 25.9 4.2 27 79-105 103-129 (134)
298 3h5l_A Putative branched-chain 24.7 3.9E+02 0.013 25.7 10.6 99 87-189 139-243 (419)
299 2d9v_A Pleckstrin homology dom 24.6 61 0.0021 26.5 3.8 25 80-104 90-114 (130)
300 2dhk_A TBC1 domain family memb 24.5 48 0.0017 26.6 3.1 25 80-104 80-104 (119)
301 4a6h_A Phosphatidylinositol 4, 24.5 51 0.0017 27.0 3.2 24 80-103 94-117 (120)
302 1n57_A Chaperone HSP31, protei 24.4 1.1E+02 0.0037 29.1 6.0 42 164-208 143-189 (291)
303 1f1j_A Caspase-7 protease; cas 24.3 1.6E+02 0.0056 28.3 7.3 112 103-214 62-196 (305)
304 3lwz_A 3-dehydroquinate dehydr 24.3 1.6E+02 0.0056 25.4 6.4 61 110-172 8-79 (153)
305 3lzd_A DPH2; diphthamide biosy 24.2 3E+02 0.01 27.4 9.3 67 102-175 257-323 (378)
306 3ph3_A Ribose-5-phosphate isom 24.1 1.3E+02 0.0044 26.5 5.8 71 109-216 20-96 (169)
307 1i1q_B Anthranilate synthase c 24.1 1.1E+02 0.0038 26.7 5.7 61 111-181 2-62 (192)
308 2b99_A Riboflavin synthase; lu 24.1 2.3E+02 0.008 24.4 7.4 75 110-189 3-87 (156)
309 2fsv_C NAD(P) transhydrogenase 24.0 69 0.0023 28.9 4.0 65 107-188 75-139 (203)
310 2h0a_A TTHA0807, transcription 24.0 97 0.0033 28.1 5.5 67 131-205 19-86 (276)
311 3l3b_A ES1 family protein; ssg 23.9 81 0.0028 29.2 4.9 14 165-178 106-119 (242)
312 3nbm_A PTS system, lactose-spe 23.9 1.9E+02 0.0066 23.1 6.5 83 107-205 4-86 (108)
313 2nv0_A Glutamine amidotransfer 23.7 1.1E+02 0.0037 26.8 5.5 52 110-181 2-53 (196)
314 1x05_A Pleckstrin; PH domain, 23.7 46 0.0016 26.9 2.8 27 80-106 96-122 (129)
315 3m3p_A Glutamine amido transfe 23.6 33 0.0011 32.2 2.1 59 109-180 3-62 (250)
316 3kbq_A Protein TA0487; structu 23.3 1.3E+02 0.0043 26.5 5.7 47 131-178 26-74 (172)
317 2q5c_A NTRC family transcripti 23.3 1.2E+02 0.0041 27.0 5.7 70 131-215 18-87 (196)
318 2klx_A Glutaredoxin; thioredox 23.2 2.2E+02 0.0077 20.8 7.0 53 110-170 6-59 (89)
319 3rfo_A Methionyl-tRNA formyltr 23.2 1E+02 0.0036 29.8 5.7 70 109-181 28-97 (317)
320 2amj_A Modulator of drug activ 23.1 1.4E+02 0.005 26.4 6.3 62 109-172 13-76 (204)
321 1ka9_H Imidazole glycerol phos 22.8 2.1E+02 0.007 25.1 7.3 39 132-182 17-55 (200)
322 2yry_A Pleckstrin homology dom 22.7 60 0.0021 25.7 3.3 24 80-103 96-119 (122)
323 1pno_A NAD(P) transhydrogenase 22.7 61 0.0021 28.5 3.4 59 108-179 53-111 (180)
324 1o1x_A Ribose-5-phosphate isom 22.5 1.5E+02 0.005 25.7 5.8 67 114-216 16-88 (155)
325 1hyq_A MIND, cell division inh 22.5 3.6E+02 0.012 24.2 9.2 38 111-150 3-40 (263)
326 3d54_D Phosphoribosylformylgly 22.4 65 0.0022 28.6 3.8 52 109-178 2-53 (213)
327 4fe7_A Xylose operon regulator 22.1 2.9E+02 0.0099 27.0 9.0 82 107-204 23-104 (412)
328 2vdj_A Homoserine O-succinyltr 22.0 83 0.0029 30.3 4.6 65 107-176 33-109 (301)
329 1x1g_A Pleckstrin 2; PH domain 22.0 55 0.0019 26.3 3.0 25 80-104 100-124 (129)
330 1wik_A Thioredoxin-like protei 21.9 2.8E+02 0.0096 21.5 8.0 36 110-152 15-55 (109)
331 2qvg_A Two component response 21.9 2.8E+02 0.0096 21.7 7.5 72 129-205 19-97 (143)
332 1h05_A 3-dehydroquinate dehydr 21.8 1.5E+02 0.005 25.5 5.5 43 129-172 32-74 (146)
333 1qdl_B Protein (anthranilate s 21.8 1.3E+02 0.0044 26.5 5.6 57 112-181 4-60 (195)
334 3i3w_A Phosphoglucosamine muta 21.8 2E+02 0.0068 29.1 7.7 49 92-147 154-202 (443)
335 3c5y_A Ribose/galactose isomer 21.7 1.1E+02 0.0038 28.3 5.1 74 110-216 20-102 (231)
336 3i45_A Twin-arginine transloca 21.7 3.7E+02 0.013 25.6 9.6 78 108-189 141-222 (387)
337 2yxb_A Coenzyme B12-dependent 21.6 3.2E+02 0.011 23.2 8.1 71 107-183 16-86 (161)
338 3n8k_A 3-dehydroquinate dehydr 21.6 2.2E+02 0.0074 25.0 6.7 62 109-172 28-100 (172)
339 1e2b_A Enzyme IIB-cellobiose; 21.5 1.1E+02 0.0038 24.3 4.7 53 110-172 4-56 (106)
340 2c92_A 6,7-dimethyl-8-ribityll 21.5 1.6E+02 0.0054 25.6 5.9 79 108-189 16-104 (160)
341 2ywj_A Glutamine amidotransfer 21.5 1.5E+02 0.0053 25.5 6.1 50 111-180 2-51 (186)
342 2dtc_A RAL guanine nucleotide 21.3 79 0.0027 26.3 3.8 27 80-106 88-114 (126)
343 1wg7_A Dedicator of cytokinesi 21.2 67 0.0023 26.7 3.4 25 80-104 100-124 (150)
344 3lor_A Thiol-disulfide isomera 21.2 3.3E+02 0.011 22.0 8.4 95 82-178 35-132 (160)
345 3fw2_A Thiol-disulfide oxidore 21.1 3E+02 0.01 22.1 7.6 87 83-178 39-128 (150)
346 1k68_A Phytochrome response re 20.9 1.9E+02 0.0066 22.4 6.2 72 129-205 14-93 (140)
347 4e5v_A Putative THUA-like prot 20.8 45 0.0015 31.9 2.4 61 108-174 3-66 (281)
348 1gtz_A 3-dehydroquinate dehydr 20.6 1.6E+02 0.0055 25.5 5.6 43 130-173 37-79 (156)
349 3olq_A Universal stress protei 20.6 1.9E+02 0.0064 27.0 6.9 75 132-213 77-158 (319)
350 2coc_A FYVE, rhogef and PH dom 20.5 67 0.0023 26.0 3.1 25 80-104 82-106 (112)
351 3i09_A Periplasmic branched-ch 20.5 3.6E+02 0.012 25.5 9.1 78 108-189 139-218 (375)
352 1obo_A Flavodoxin; electron tr 20.4 1.6E+02 0.0056 24.7 5.9 85 110-206 2-89 (169)
353 1tuo_A Putative phosphomannomu 20.4 1.4E+02 0.0049 30.3 6.3 80 92-177 157-252 (464)
354 2ohh_A Type A flavoprotein FPR 20.3 4.9E+02 0.017 25.0 10.2 61 108-174 255-315 (404)
355 3ot1_A 4-methyl-5(B-hydroxyeth 20.3 61 0.0021 29.0 3.1 95 107-213 7-120 (208)
356 1wek_A Hypothetical protein TT 20.3 1.6E+02 0.0053 26.9 5.9 44 154-204 57-100 (217)
357 2ct6_A SH3 domain-binding glut 20.3 3.2E+02 0.011 21.4 7.8 49 108-157 6-54 (111)
358 2dkp_A Pleckstrin homology dom 20.3 66 0.0022 25.8 3.1 25 80-104 95-119 (128)
359 3ctp_A Periplasmic binding pro 20.2 2.9E+02 0.0098 25.8 8.2 69 107-178 58-127 (330)
360 1v88_A Oxysterol binding prote 20.0 60 0.002 26.9 2.8 25 80-104 100-124 (130)
No 1
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=100.00 E-value=5.2e-51 Score=409.55 Aligned_cols=291 Identities=21% Similarity=0.294 Sum_probs=230.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+++|++||+||.||++++.+.| +++++.|++++++++++.|++++|+.++++++. +++|.||++|||||+|||+|+|
T Consensus 6 ~~m~~~~vi~Np~sG~~~~~~~~-~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~-~~~d~vv~~GGDGTl~~v~~~l 83 (304)
T 3s40_A 6 TKFEKVLLIVNPKAGQGDLHTNL-TKIVPPLAAAFPDLHILHTKEQGDATKYCQEFA-SKVDLIIVFGGDGTVFECTNGL 83 (304)
T ss_dssp CSCSSEEEEECTTCSSSCHHHHH-HHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHT-TTCSEEEEEECHHHHHHHHHHH
T ss_pred CCCCEEEEEECcccCCCchHHHH-HHHHHHHHHcCCeEEEEEccCcchHHHHHHHhh-cCCCEEEEEccchHHHHHHHHH
Confidence 34689999999999999998888 589999999999999999999999999999986 4899999999999999999999
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADI 266 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv 266 (484)
+.++ .++|||+||+||+|+||+++ |+|.++.+|+..|++|+.+++|+++++ .++| ++++++||+|++
T Consensus 84 ~~~~-----~~~~l~iiP~Gt~N~~ar~l----g~~~~~~~a~~~i~~g~~~~iDlg~v~---~~~F-~~~~~~G~da~v 150 (304)
T 3s40_A 84 APLE-----IRPTLAIIPGGTCNDFSRTL----GVPQNIAEAAKLITKEHVKPVDVAKAN---GQHF-LNFWGIGLVSEV 150 (304)
T ss_dssp TTCS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHTTCCEEEEEEEEET---TEEE-SSEEEEC-----
T ss_pred hhCC-----CCCcEEEecCCcHHHHHHHc----CCCccHHHHHHHHHhCCeEEEEEEEEC---CEEE-EEEEeehHHHHH
Confidence 9852 36899999999999999999 888899999999999999999999996 3666 457999999999
Q ss_pred cccc--ccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcc
Q 011517 267 DIES--EKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDV 344 (484)
Q Consensus 267 ~~~s--ek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 344 (484)
..+. +.++++|+++|.+++++.+++.+.|+.+|.+ +|
T Consensus 151 ~~~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg--- 189 (304)
T 3s40_A 151 SNNIDAEEKAKLGKIGYYLSTIRTVKNAETFPVKITY--------------------------------------DG--- 189 (304)
T ss_dssp -------------CHHHHTTTC------CCEEEEEEE--------------------------------------TT---
T ss_pred HHhcCHHHhhcCCchHHHHHHHHHHhhcCCceEEEEE--------------------------------------CC---
Confidence 8864 4567899999999999999888877777642 11
Q ss_pred ccCCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEE
Q 011517 345 DLKNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKA 424 (484)
Q Consensus 345 ~~~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a 424 (484)
+.+++++.++.++|.+|+|+++.++|+|+++||.||++++++.++..+..++..+..|. ...|.|+++++++
T Consensus 190 -------~~~~~~~~~v~v~N~~~~Ggg~~~~p~a~~~DG~Ldv~~v~~~~~~~l~~l~~~~~~g~-~~~~~v~~~~~~~ 261 (304)
T 3s40_A 190 -------QVYEDEAVLVMVGNGEYLGGIPSFIPNVKCDDGTLDIFVVKSTGIQAFKDYIGKKLFED-SNENDIFHVKAKS 261 (304)
T ss_dssp -------EEEEEEEEEEEEECSSEETTEECSSTTCCTTSSCEEEEEEETTCHHHHHHHTTCCCSSC-CCTTTEEEEEESE
T ss_pred -------EEEEeEEEEEEEECCCcCCCCcccCCCCcCCCCEEEEEEEccCCHHHHHHHHHHHhcCC-CCCCcEEEEEccE
Confidence 23567888899999999999999999999999999999999999876666655555565 7789999999999
Q ss_pred EEEEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 425 FILEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 425 ~~i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
++|++.+ +..+++|||.++..|+++++.|++|.++.|
T Consensus 262 v~i~~~~-------~~~~~~DGE~~~~~p~~i~v~p~al~v~~p 298 (304)
T 3s40_A 262 IHIETEE-------EKEVDTDGESSLHTPCQIELLQGHFTMIYN 298 (304)
T ss_dssp EEEEESS-------CCEEEEC--CCEESSEEEEEEEEEEEEECC
T ss_pred EEEEeCC-------CcEEEeCCCCCCCceEEEEEECCeEEEEec
Confidence 9999863 568999999987666666666666666655
No 2
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=100.00 E-value=6.4e-47 Score=385.12 Aligned_cols=291 Identities=24% Similarity=0.346 Sum_probs=245.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.+|++||+||.||++++.+.+ +++++.|+++|+++.+..|++++|+.++++++..+++|.||++|||||++||+|+|+.
T Consensus 24 m~~i~vI~NP~sg~~~~~~~~-~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGDGTv~~v~~~l~~ 102 (337)
T 2qv7_A 24 RKRARIIYNPTSGKEQFKREL-PDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGDGTLNEVVNGIAE 102 (337)
T ss_dssp CEEEEEEECTTSTTSCHHHHH-HHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECHHHHHHHHHHHTT
T ss_pred cceEEEEECCCCCCCchHHHH-HHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCchHHHHHHHHHHh
Confidence 468999999999999988877 6899999999999999999999999999988877789999999999999999999976
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccccc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~ 268 (484)
.. .++|||+||+||+|+||++| |+|.++..|+..|.+|+.+++|+++++ .++| ++++++||+|++..
T Consensus 103 ~~-----~~~pl~iIP~GT~N~lAr~L----g~~~~~~~al~~i~~g~~~~iD~g~v~---~r~f-l~~~~~G~~a~v~~ 169 (337)
T 2qv7_A 103 KP-----NRPKLGVIPMGTVNDFGRAL----HIPNDIMGALDVIIEGHSTKVDIGKMN---NRYF-INLAAGGQLTQVSY 169 (337)
T ss_dssp CS-----SCCEEEEEECSSCCHHHHHT----TCCSSHHHHHHHHHHTCEEEEEEEEET---TEEE-SSEEEEECBCC---
T ss_pred CC-----CCCcEEEecCCcHhHHHHHc----CCCCCHHHHHHHHHcCCcEEEEEEEEC---CEEE-EEEeeecccHHHHH
Confidence 42 37899999999999999999 888899999999999999999999996 3656 45799999999987
Q ss_pred ccc--cccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccc
Q 011517 269 ESE--KYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (484)
Q Consensus 269 ~se--k~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (484)
+.+ .++++|.++|.+++++.+...|.|+.+|++ +|
T Consensus 170 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg----- 206 (337)
T 2qv7_A 170 ETPSKLKSIVGPFAYYIKGFEMLPQMKAVDLRIEY--------------------------------------DG----- 206 (337)
T ss_dssp ----------CGGGSCCCTTTTGGGBCCEEEEEEE--------------------------------------TT-----
T ss_pred HhhHHHHhccChHHHHHHHHHHHHhCCCccEEEEE--------------------------------------CC-----
Confidence 643 456789999999999988888877777652 11
Q ss_pred CCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEE
Q 011517 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFI 426 (484)
Q Consensus 347 ~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~ 426 (484)
+.+++++.++.++|.+++|+++.++|+|.++||.||++++++.+++++++++..+..|+|.+.+.|+++++++++
T Consensus 207 -----~~~~~~~~~v~v~n~~~~gGg~~i~P~a~~~DG~ldv~~v~~~~~~~l~~~~~~v~~g~~~~~~~v~~~~~~~i~ 281 (337)
T 2qv7_A 207 -----NVFQGEALLFFLGLTNSMAGFEKLVPDAKLDDGYFTLIIVEKSNLAELGHIMTLASRGEHTKHPKVIYEKAKAIN 281 (337)
T ss_dssp -----EEEEEEEEEEEEESSCCCSSCSCSSTTCCSSSSCEEEEEEECCCHHHHHHHHHHHTTTCGGGSTTEEEEEESEEE
T ss_pred -----EEEEeeEEEEEEECCCCCCCCCccCCCCcCCCCeEEEEEEccCCHHHHHHHHHHHhcCCccCCCCEEEEEeeEEE
Confidence 124577888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 427 LEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 427 i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
|++. ++..+++|||.....++++++.|+++.++.|
T Consensus 282 i~~~-------~~~~~~iDGE~~~~~~i~i~v~p~~l~v~~p 316 (337)
T 2qv7_A 282 ISSF-------TDLQLNVDGEYGGKLPANFLNLERHIDVFAP 316 (337)
T ss_dssp EECS-------SCCEEEETTEEEEESCEEEEEEEEEEEEECC
T ss_pred EEEC-------CCCeEEECCCcCCCCcEEEEEEcCeEEEEec
Confidence 9964 3568999999986666666666666665554
No 3
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=100.00 E-value=2.1e-45 Score=373.27 Aligned_cols=287 Identities=20% Similarity=0.201 Sum_probs=236.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.+|++||+||.||++ +.+ +++.+.|+++++++.+..|++++|+.++++++...++|.||++|||||++||+|+|..
T Consensus 29 ~~~~~vi~Np~sg~~---~~~-~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGDGTl~~v~~~l~~ 104 (332)
T 2bon_A 29 FPASLLILNGKSTDN---LPL-REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGDGTINEVSTALIQ 104 (332)
T ss_dssp -CCEEEEECSSSTTC---HHH-HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCC---chH-HHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccchHHHHHHHHHhh
Confidence 478999999999987 346 4789999999999999999999999999888766689999999999999999999996
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceeeeeEEEEEeCCeeEEEEEeeeeeeeccccc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRLLDVATILQGKTRFHSVLMLAWGLVADIDI 268 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~lDl~~V~~~~~~~fs~~~~~~G~~adv~~ 268 (484)
+++ ..++|||+||+||+|+||+++ ++|.++..|+..|++|+.+++|+++++. .++| ++++++||+|++..
T Consensus 105 ~~~---~~~~plgiiP~Gt~N~fa~~l----~i~~~~~~al~~i~~g~~~~iDlg~v~~--r~~f-l~~~~~G~da~v~~ 174 (332)
T 2bon_A 105 CEG---DDIPALGILPLGTANDFATSV----GIPEALDKALKLAIAGDAIAIDMAQVNK--QTCF-INMATGGFGTRITT 174 (332)
T ss_dssp CCS---SCCCEEEEEECSSSCHHHHHT----TCCSSHHHHHHHHHHSEEEEEEEEEETT--SCEE-SSEEEEEEEEEC--
T ss_pred ccc---CCCCeEEEecCcCHHHHHHhc----CCCCCHHHHHHHHHcCCeEEeeEEEECC--ceEE-EEEEeECccHHHHH
Confidence 531 237899999999999999999 7888999999999999999999999973 2256 45799999999986
Q ss_pred c--cccccccCChhhHHHHHHHHHhccccceEEEEecCCCCCCCCCCCcccccCcCCCCCCCCCcccccccccCCCcccc
Q 011517 269 E--SEKYRWMGSARIDFYALQRILYLRQYNGRVSFVPAPGFENHGEPSTYSEQNICNPIPSQQQPIKILQHGYQGPDVDL 346 (484)
Q Consensus 269 ~--sek~R~~G~~ry~~~~l~~l~~~r~y~~~is~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 346 (484)
+ .+.++++|.++|.+.+++++...+.|+.+|.+ +|
T Consensus 175 ~~~~~~k~~~G~~~Y~~~~l~~l~~~~~~~~~i~~--------------------------------------dg----- 211 (332)
T 2bon_A 175 ETPEKLKAALGSVSYIIHGLMRMDTLQPDRCEIRG--------------------------------------EN----- 211 (332)
T ss_dssp --------CCHHHHHHHHHTSCEEEEECEEEEEEE--------------------------------------TT-----
T ss_pred HhhHHhHhcccHHHHHHHHHHHHhhCCCeeEEEEE--------------------------------------CC-----
Confidence 4 44567899999999988777766666666542 11
Q ss_pred CCCceEEEeecEEEEEEeecccCCCCCccCCCCccCCCeEEEEEEecCCHHHHHHHHHhhccCCCCcCCcEEEEEEEEEE
Q 011517 347 KNLEWRIINGPFVAVWLHNVPWGSENTMAAPDAKFSDGYLDLIIIKDCPKLALFSLLSNLNKGGHVESPYVAYLKVKAFI 426 (484)
Q Consensus 347 ~~~~w~~i~g~f~~v~~~N~~~~g~~~~~aP~a~~~DG~ldlv~i~~~s~~~ll~~l~~~~~G~~~~~p~V~~~kv~a~~ 426 (484)
+.+++++.++.++|.+|+|+++.++|+|.++||.||++++++. ++ +++++..+..| |.+ +.|.++++++++
T Consensus 212 -----~~~~~~~~~v~v~N~~~~ggg~~i~P~a~~~DG~Ldv~iv~~~-~~-~l~~~~~~~~g-~~~-~~v~~~~~~~i~ 282 (332)
T 2bon_A 212 -----FHWQGDALVIGIGNGRQAGGGQQLCPNALINDGLLQLRIFTGD-EI-LPALVSTLKSD-EDN-PNIIEGASSWFD 282 (332)
T ss_dssp -----EEEEEEESEEEEESSSCBTTTBCSCTTCCTTSSCEEEEEECCS-SC-CHHHHHHHHTT-CCC-TTEEEEEESEEE
T ss_pred -----EEEEEEEEEEEEECCCccCCCcccCCCCCCCCCeEEEEEECCH-HH-HHHHHHHHHcC-CCC-CcEEEEEeeEEE
Confidence 1235677788899999999999999999999999999999988 76 88888888889 876 999999999999
Q ss_pred EEeCCCCCCCCCCceEEecCCccccCCceeeecCCccccccc
Q 011517 427 LEPGALTQEPNREGIIDCDGEVLARGKGTYQCDQKSLMSYDK 468 (484)
Q Consensus 427 i~~~~~~~~~~~~~~~~vDGE~~~~~~~~~~~~~~~l~~~~p 468 (484)
|++. ++..+++|||.+...++++++.|++|.++.|
T Consensus 283 I~~~-------~~~~~~iDGE~~~~~~~~i~v~p~al~vl~p 317 (332)
T 2bon_A 283 IQAP-------HDITFNLDGEPLSGQNFHIEILPAALRCRLP 317 (332)
T ss_dssp EEEE-------EEEEEEETTEEEEEEEEEEEEEEEEEEEEEC
T ss_pred EEEC-------CCCeEEecCCCCCCceEEEEEECCeeEEEeC
Confidence 9974 2467999999987666777777777666655
No 4
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=99.50 E-value=6.6e-14 Score=138.92 Aligned_cols=113 Identities=19% Similarity=0.142 Sum_probs=76.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH----HHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA----KEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a----~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+++++|+||.++. +.+.+ +++...|+++|+++.+..+...... .....+....++|.||++|||||++++++
T Consensus 5 mkki~ii~np~~~~--~~~~~-~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGDGT~l~a~~ 81 (292)
T 2an1_A 5 FKCIGIVGHPRHPT--ALTTH-EMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAAR 81 (292)
T ss_dssp CCEEEEECC---------CHH-HHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCHHHHHHHHH
T ss_pred CcEEEEEEcCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCcHHHHHHHH
Confidence 47899999998643 34434 6889999999998877665322100 00001111236899999999999999999
Q ss_pred HHhcCcCcccccCCc-EEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 185 GLLEREDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 185 gL~~~~~~~~~~~~p-igiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
++... .+| ||| |+||.|.|+. + + |.++.+|+..|..|+.+
T Consensus 82 ~~~~~-------~~P~lGI-~~Gt~gfla~-~----~-~~~~~~al~~i~~g~~~ 122 (292)
T 2an1_A 82 TLARY-------DINVIGI-NRGNLGFLTD-L----D-PDNALQQLSDVLEGRYI 122 (292)
T ss_dssp HHTTS-------SCEEEEB-CSSSCCSSCC-B----C-TTSHHHHHHHHHTTCEE
T ss_pred HhhcC-------CCCEEEE-ECCCcccCCc-C----C-HHHHHHHHHHHHcCCCE
Confidence 99865 345 666 8999766664 4 4 67899999999999873
No 5
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=99.35 E-value=2.2e-12 Score=125.77 Aligned_cols=99 Identities=17% Similarity=0.143 Sum_probs=71.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+|+++|+||.+|++ +.+.. +++...|+ ++++ . +. | +....++|.||++|||||++++++++..
T Consensus 1 mki~ii~Np~~~~~-~~~~~-~~i~~~l~--~~~~--~-~~---~------~~~~~~~D~vv~~GGDGTll~~a~~~~~- 63 (258)
T 1yt5_A 1 MKIAILYREEREKE-GEFLK-EKISKEHE--VIEF--G-EA---N------APGRVTADLIVVVGGDGTVLKAAKKAAD- 63 (258)
T ss_dssp CEEEEEECGGGHHH-HHHHH-HHHTTTSE--EEEE--E-ES---S------SCSCBCCSEEEEEECHHHHHHHHTTBCT-
T ss_pred CEEEEEEeCCCchH-HHHHH-HHHHHHhc--CCce--e-cc---c------ccccCCCCEEEEEeCcHHHHHHHHHhCC-
Confidence 36899999999987 65543 45555555 4333 2 21 2 2223578999999999999999999875
Q ss_pred cCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 190 EDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 190 ~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
. .+.+|| ++||.|-++ .+ . |.++.+|+..+.+|+.+
T Consensus 64 ~------~PilGI-n~G~~Gfl~-~~----~-~~~~~~al~~i~~g~~~ 99 (258)
T 1yt5_A 64 G------TPMVGF-KAGRLGFLT-SY----T-LDEIDRFLEDLRNWNFR 99 (258)
T ss_dssp T------CEEEEE-ESSSCCSSC-CB----C-GGGHHHHHHHHHTTCCE
T ss_pred C------CCEEEE-ECCCCCccC-cC----C-HHHHHHHHHHHHcCCce
Confidence 2 234777 599995555 55 4 77899999999999864
No 6
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=99.34 E-value=2.2e-11 Score=121.70 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=77.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH----------------HHHHHHH-hhcCCCceEE
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH----------------AKEIVKV-LDLSKYDGIV 171 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~----------------a~~l~~~-~~~~~~d~IV 171 (484)
++++++|+||.++. +.+.+ +++...|+++|+++.+..+..... +..+.+. ....++|.||
T Consensus 4 m~ki~iI~n~~~~~--~~~~~-~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi 80 (307)
T 1u0t_A 4 HRSVLLVVHTGRDE--ATETA-RRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVL 80 (307)
T ss_dssp -CEEEEEESSSGGG--GSHHH-HHHHHHHHTTTCEEEEEC-----------------------------------CCCEE
T ss_pred CCEEEEEEeCCCHH--HHHHH-HHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEE
Confidence 57899999998864 34444 689999999999988877664321 2222111 2335789999
Q ss_pred EEcCCChHHHHHHHHhcCcCcccccCCc-EEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCceee
Q 011517 172 CVSGDGILVEVVNGLLEREDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKRL 239 (484)
Q Consensus 172 ~vGGDGtl~evingL~~~~~~~~~~~~p-igiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~~ 239 (484)
++|||||++++++.+... .+| || |+.||.|.|+. + .|.++..++..|.+|+.+.
T Consensus 81 ~~GGDGT~l~a~~~~~~~-------~~pvlg-i~~G~~gfl~~-~-----~~~~~~~~~~~i~~g~~~~ 135 (307)
T 1u0t_A 81 VLGGDGTFLRAAELARNA-------SIPVLG-VNLGRIGFLAE-A-----EAEAIDAVLEHVVAQDYRV 135 (307)
T ss_dssp EEECHHHHHHHHHHHHHH-------TCCEEE-EECSSCCSSCS-E-----EGGGHHHHHHHHHHTCCEE
T ss_pred EEeCCHHHHHHHHHhccC-------CCCEEE-EeCCCCccCcc-c-----CHHHHHHHHHHHHcCCcEE
Confidence 999999999999999764 356 55 58999998874 4 2567889999999998654
No 7
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=99.19 E-value=3.5e-10 Score=110.94 Aligned_cols=95 Identities=13% Similarity=0.250 Sum_probs=73.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
+++.+|+||. .++.+.. +++...|+++|++++ ..++|.||++|||||+.++++.+...
T Consensus 1 mki~ii~n~~---~~~~~~~-~~l~~~l~~~g~~v~------------------~~~~D~vv~lGGDGT~l~aa~~~~~~ 58 (272)
T 2i2c_A 1 MKYMITSKGD---EKSDLLR-LNMIAGFGEYDMEYD------------------DVEPEIVISIGGDGTFLSAFHQYEER 58 (272)
T ss_dssp CEEEEEECCS---HHHHHHH-HHHHHHHTTSSCEEC------------------SSSCSEEEEEESHHHHHHHHHHTGGG
T ss_pred CEEEEEECCC---HHHHHHH-HHHHHHHHHCCCEeC------------------CCCCCEEEEEcCcHHHHHHHHHHhhc
Confidence 4789999973 3455544 588889999998761 25789999999999999999999753
Q ss_pred cCcccccCCc-EEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 190 EDWNDAIKVP-LGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 190 ~~~~~~~~~p-igiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
. ..+| +|| |+|| |+|+..+ . |.++.+++..|.+|..+
T Consensus 59 ~-----~~~PilGI-n~G~-lgfl~~~----~-~~~~~~~l~~l~~g~~~ 96 (272)
T 2i2c_A 59 L-----DEIAFIGI-HTGH-LGFYADW----R-PAEADKLVKLLAKGEYQ 96 (272)
T ss_dssp T-----TTCEEEEE-ESSS-CCSSCCB----C-GGGHHHHHHHHHTTCCE
T ss_pred C-----CCCCEEEE-eCCC-CCcCCcC----C-HHHHHHHHHHHHcCCCE
Confidence 1 1467 565 9999 6677776 3 67888999999999764
No 8
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=98.03 E-value=3.4e-06 Score=86.33 Aligned_cols=114 Identities=17% Similarity=0.192 Sum_probs=75.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHH---------------------hhcC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKV---------------------LDLS 165 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~---------------------~~~~ 165 (484)
..+++++||.||.. ..+.+.. .++...|.+.+..++++..+...+ ++..+ ....
T Consensus 39 ~~~k~V~II~n~~~--~~~~~~~-~~l~~~L~~~~~gi~V~ve~~~a~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (388)
T 3afo_A 39 NPLQNVYITKKPWT--PSTREAM-VEFITHLHESYPEVNVIVQPDVAE--EISQDFKSPLENDPNRPHILYTGPEQDIVN 113 (388)
T ss_dssp SCCCEEEEEECTTC--HHHHHHH-HHHHHHHHHHCTTCEEECCHHHHH--HHHTTCCSCGGGCTTSCEEEEECCHHHHHH
T ss_pred CCCcEEEEEEeCCC--HHHHHHH-HHHHHHHHHhCCCeEEEEeCchhh--hhhhhccccccccccccccccccchhhccc
Confidence 44789999999974 4455444 588888888833344444333222 22100 0113
Q ss_pred CCceEEEEcCCChHHHHHHHHhcCcCcccccCC-cEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKV-PLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~-pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
++|.||++|||||+..++..+... .+ ||-=|+.|+-+-|+ .+ . +.+...++..+++|+..
T Consensus 114 ~~DlVIvlGGDGTlL~aa~~~~~~-------~vpPiLGIN~G~lGFLt-~~----~-~~~~~~al~~il~g~~~ 174 (388)
T 3afo_A 114 RTDLLVTLGGDGTILHGVSMFGNT-------QVPPVLAFALGTLGFLS-PF----D-FKEHKKVFQEVISSRAK 174 (388)
T ss_dssp HCSEEEEEESHHHHHHHHHTTTTS-------CCCCEEEEECSSCCSSC-CE----E-GGGHHHHHHHHHTTCCE
T ss_pred CCCEEEEEeCcHHHHHHHHHhccc-------CCCeEEEEECCCcccCC-cC----C-hHHHHHHHHHHhcCCce
Confidence 579999999999999999988654 34 44445999885554 34 2 35778899999999753
No 9
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=96.89 E-value=0.0025 Score=62.07 Aligned_cols=96 Identities=17% Similarity=0.278 Sum_probs=65.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+..++.++.||..- .+++...|+++|+++.+...... . ..+.|.||++|||||+-.++..+
T Consensus 27 ~~~mki~iv~~~~~~--------~~~l~~~L~~~g~~v~~~~~~~~--------~--~~~~DlvIvlGGDGT~L~aa~~~ 88 (278)
T 1z0s_A 27 GGGMRAAVVYKTDGH--------VKRIEEALKRLEVEVELFNQPSE--------E--LENFDFIVSVGGDGTILRILQKL 88 (278)
T ss_dssp ---CEEEEEESSSTT--------HHHHHHHHHHTTCEEEEESSCCG--------G--GGGSSEEEEEECHHHHHHHHTTC
T ss_pred ccceEEEEEeCCcHH--------HHHHHHHHHHCCCEEEEcccccc--------c--cCCCCEEEEECCCHHHHHHHHHh
Confidence 345679999998643 35788899999998766432211 1 23689999999999998888655
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHh
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIR 234 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~ 234 (484)
.. . +||-=|..|+-+-|+. + .+.+..+++..+.+
T Consensus 89 ~~-------~-~PilGIN~G~lGFLt~-~-----~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 89 KR-------C-PPIFGINTGRVGLLTH-A-----SPENFEVELKKAVE 122 (278)
T ss_dssp SS-------C-CCEEEEECSSSCTTCC-B-----BTTBCHHHHHHHHH
T ss_pred CC-------C-CcEEEECCCCCccccc-c-----CHHHHHHHHHHHHh
Confidence 32 2 6877788897666653 3 24466777777775
No 10
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=95.58 E-value=0.07 Score=53.81 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=71.4
Q ss_pred hhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHH---------H-------hh--cC
Q 011517 104 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVK---------V-------LD--LS 165 (484)
Q Consensus 104 ~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~---------~-------~~--~~ 165 (484)
.+...+|+++||--|..- .+.... +++...|...|+++-+... -..+ ..+.. . .+ ..
T Consensus 33 ~w~~~~k~I~iv~K~~~~--~~~~~~-~~l~~~L~~~~~~V~ve~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (365)
T 3pfn_A 33 TWNKSPKSVLVIKKMRDA--SLLQPF-KELCTHLMEENMIVYVEKK-VLED-PAIASDESFGAVKKKFCTFREDYDDISN 107 (365)
T ss_dssp EESSCCCEEEEEECTTCG--GGHHHH-HHHHHHHHHTSCEEEEEHH-HHHS-HHHHHCSTTHHHHHHCEEECTTTCCCTT
T ss_pred ccCCCCCEEEEEecCCCH--HHHHHH-HHHHHHHHHCCCEEEEehH-Hhhh-hccccccccccccccccccccChhhccc
Confidence 344578999999887543 333334 5788888888876654321 1111 01110 0 00 14
Q ss_pred CCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcccccCCCCCHHHHHHHHHhCcee
Q 011517 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLLDLVGEPCKASNAILAVIRGHKR 238 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~~~~g~~~~~~~A~~~i~~g~~~ 238 (484)
++|.||++|||||+-.++.-+... .+||-=|-.|+--=|+ .+ .+.+..+++..+++|...
T Consensus 108 ~~DlvI~lGGDGT~L~aa~~~~~~-------~~PvlGiN~G~LGFLt-~~-----~~~~~~~~l~~vl~g~~~ 167 (365)
T 3pfn_A 108 QIDFIICLGGDGTLLYASSLFQGS-------VPPVMAFHLGSLGFLT-PF-----SFENFQSQVTQVIEGNAA 167 (365)
T ss_dssp TCSEEEEESSTTHHHHHHHHCSSS-------CCCEEEEESSSCTTTC-CE-----ESTTHHHHHHHHHHSCCB
T ss_pred CCCEEEEEcChHHHHHHHHHhccC-------CCCEEEEcCCCCccce-ee-----cHHHHHHHHHHHHcCCCe
Confidence 689999999999999988866443 4676555556322222 22 245788899999999754
No 11
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=93.62 E-value=0.48 Score=47.76 Aligned_cols=102 Identities=21% Similarity=0.288 Sum_probs=64.6
Q ss_pred HHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 99 LRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 99 l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
|.+.+...+ +|++|+..+.+-+..+ +.+++...|+.+|+++.++. ........++++.+...+.|.||.+|
T Consensus 32 l~~~l~~~g--~~~liVtd~~~~~~~g---~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavG 106 (371)
T 1o2d_A 32 RGNIIDLLG--KRALVVTGKSSSKKNG---SLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLG 106 (371)
T ss_dssp HGGGGGGTC--SEEEEEEESSGGGTSS---HHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEE
T ss_pred HHHHHHHcC--CEEEEEECchHHhhcc---HHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeC
Confidence 334454443 7999999875433221 34688899999999876542 12444566677776666899999999
Q ss_pred CCChHHHHHHHHhcC------cCccc------ccCCcEEEecCC
Q 011517 175 GDGILVEVVNGLLER------EDWND------AIKVPLGVVPAG 206 (484)
Q Consensus 175 GDGtl~evingL~~~------~~~~~------~~~~pigiIP~G 206 (484)
| |++.++.-.+... +-|+. ...+|+..||.=
T Consensus 107 G-Gsv~D~AK~iA~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 149 (371)
T 1o2d_A 107 G-GSPMDFAKAVAVLLKEKDLSVEDLYDREKVKHWLPVVEIPTT 149 (371)
T ss_dssp S-HHHHHHHHHHHHHTTSTTCCSGGGGCGGGCCCCCCEEEEECS
T ss_pred C-hHHHHHHHHHHHHHhCCCCCHHHHhcccCCCCCCeEEEEeCC
Confidence 8 6666655443221 00100 146899999973
No 12
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=93.25 E-value=0.47 Score=48.00 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=59.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---c-CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---T-TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T-~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+..-+.. .. +.+++...|+.+|+++.++. . .......++++.+...++|.||.+|| |++.++.-.
T Consensus 34 ~~~livtd~~~~~~~-~g-~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~ 110 (387)
T 3bfj_A 34 KKALLVTDKGLRAIK-DG-AVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG-GSPHDCGKG 110 (387)
T ss_dssp SEEEEECCTTTC--C-CS-SHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECcchhhcc-ch-HHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-cchhhHHHH
Confidence 789999987654320 00 34689999999999886652 1 23344556666666678899999998 676666554
Q ss_pred HhcC---c--Ccc-------cccCCcEEEecC
Q 011517 186 LLER---E--DWN-------DAIKVPLGVVPA 205 (484)
Q Consensus 186 L~~~---~--~~~-------~~~~~pigiIP~ 205 (484)
+... + -|+ ....+|+..||.
T Consensus 111 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 142 (387)
T 3bfj_A 111 IGIAATHEGDLYQYAGIETLTNPLPPIVAVNT 142 (387)
T ss_dssp HHHHHHSSSCSGGGCBSSCCCSCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 4321 1 011 113689999998
No 13
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=92.87 E-value=0.26 Score=49.34 Aligned_cols=86 Identities=17% Similarity=0.232 Sum_probs=60.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+..+..-+ .+.+++...|+.+|+++.++. .. ......++ +.+...+.|.||.+|| |++.++.-.+
T Consensus 35 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGG-Gsv~D~aK~v 107 (354)
T 3ce9_A 35 KRVSLYFGEGIYE-----LFGETIEKSIKSSNIEIEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGG-GKAIDAVKYM 107 (354)
T ss_dssp SEEEEEEETTHHH-----HHHHHHHHHHHTTTCEEEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEECccHHH-----HHHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECC-hHHHHHHHHH
Confidence 5899999876543 244789999999999887654 22 23334455 5554567899999998 7888777665
Q ss_pred hcCcCcccccCCcEEEecCCCc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSg 208 (484)
.-. ..+|+..||.=.+
T Consensus 108 A~~------~~~p~i~IPTT~~ 123 (354)
T 3ce9_A 108 AFL------RKLPFISVPTSTS 123 (354)
T ss_dssp HHH------HTCCEEEEESCCS
T ss_pred Hhh------cCCCEEEecCccc
Confidence 532 2689999998443
No 14
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=92.28 E-value=0.48 Score=48.16 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=61.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhc------CCeEEEE-e-----cCChhHHHHHHHHhhcCC--C---ceEE
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA------NIQFTVQ-E-----TTQQLHAKEIVKVLDLSK--Y---DGIV 171 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a------g~~~~v~-~-----T~~~~~a~~l~~~~~~~~--~---d~IV 171 (484)
.+|++|+.++... . .+.+++...|+.+ ++++.++ . ........++.+.+...+ + |.||
T Consensus 36 ~~k~liVtd~~v~----~-~~~~~v~~~L~~~~~~~~~g~~~~~~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~iI 110 (393)
T 1sg6_A 36 STTYVLVTDTNIG----S-IYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVI 110 (393)
T ss_dssp CSEEEEEEEHHHH----H-HHHHHHHHHHHHHHHHSSSCCEEEEEEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCEEE
T ss_pred CCeEEEEECCcHH----H-HHHHHHHHHHHhhhccccCCceeEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCEEE
Confidence 4789999986422 2 3567888899887 7776522 2 223344556666555445 6 9999
Q ss_pred EEcCCChHHHHHHHHhcCcCcccccCCcEEEecC--CCchhhh
Q 011517 172 CVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA--GTGNGMI 212 (484)
Q Consensus 172 ~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~--GSgN~~A 212 (484)
.+|| |.+.++.-...... ...+|+..||. ||+.+.+
T Consensus 111 alGG-Gsv~D~ak~~Aa~~----~rgip~i~IPTTlla~~das 148 (393)
T 1sg6_A 111 ALGG-GVIGDLTGFVASTY----MRGVRYVQVPTTLLAMVDSS 148 (393)
T ss_dssp EEES-HHHHHHHHHHHHHG----GGCCEEEEEECSHHHHHTTT
T ss_pred EECC-cHHHHHHHHHHHHh----cCCCCEEEECCchhhhhhcC
Confidence 9998 77777665544211 12689999999 7777774
No 15
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=91.52 E-value=0.69 Score=47.01 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=59.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC------ChhHHHHHHHHhhcCCC---ceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT------QQLHAKEIVKVLDLSKY---DGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~------~~~~a~~l~~~~~~~~~---d~IV~vGGDGt 178 (484)
..+|++|+.++...+ .|.+++...|+.+|+++.++.-. ......++.+.+...++ |.||.+|| |.
T Consensus 61 ~~~rvlIVtd~~v~~-----~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGG-Gs 134 (390)
T 3okf_A 61 AKQKVVIVTNHTVAP-----LYAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGG-GV 134 (390)
T ss_dssp TTCEEEEEEETTTHH-----HHHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECC-cH
Confidence 357899999987543 35678999999999988754321 23445555555443344 79999988 88
Q ss_pred HHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 179 l~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.++.-...... ...+|+..||.
T Consensus 135 v~D~ak~~Aa~~----~rgip~I~IPT 157 (390)
T 3okf_A 135 IGDLVGFAAACY----QRGVDFIQIPT 157 (390)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HhhHHHHHHHHh----cCCCCEEEeCC
Confidence 887776553111 12689999997
No 16
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=91.45 E-value=0.27 Score=50.03 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+..|..-+ . +.+++...|+. |+++..... .......++++.+...++|.||.+|| |++.++.-.+
T Consensus 53 ~r~liVtd~~~~~----~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gs~~D~AK~i 125 (387)
T 3uhj_A 53 KRALVLIDRVLFD----A-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGG-GKTADTAKIV 125 (387)
T ss_dssp SEEEEEECTTTHH----H-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESS-HHHHHHHHHH
T ss_pred CEEEEEECchHHH----H-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCC-cHHHHHHHHH
Confidence 7899999887543 2 44688889999 988722211 12233445555554457899999999 8888887776
Q ss_pred hcCcCcccccCCcEEEecCC
Q 011517 187 LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~G 206 (484)
... ..+|+..||.=
T Consensus 126 A~~------~~~p~i~IPTT 139 (387)
T 3uhj_A 126 AID------TGARIVIAPTI 139 (387)
T ss_dssp HHH------TTCEEEECCSS
T ss_pred HHh------cCCCEEEecCc
Confidence 532 26899999983
No 17
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=91.23 E-value=0.29 Score=49.31 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=58.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE--EEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~--v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+.++..-+ .+.+++...|+.+|+++. ++.-+.. ....++++.+...++|.||.+|| |++.++.-.+
T Consensus 32 ~~~livtd~~~~~-----~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK~i 105 (370)
T 1jq5_A 32 NKTVVIADEIVWK-----IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG-GKTLDTAKAV 105 (370)
T ss_dssp SEEEEEECHHHHH-----HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHHH
T ss_pred CeEEEEEChHHHH-----HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hHHHHHHHHH
Confidence 7899999775432 245789999999998874 2222222 24445555555567899999998 7888877666
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+..||.
T Consensus 106 A~~------~~~p~i~IPT 118 (370)
T 1jq5_A 106 ADE------LDAYIVIVPT 118 (370)
T ss_dssp HHH------HTCEEEEEES
T ss_pred HHh------cCCCEEEecc
Confidence 532 2689999997
No 18
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=91.01 E-value=0.32 Score=49.26 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=58.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+..+... ..-+.+++...|+.+|+++.++.- .......++++.+...++|.||.+|| |++.++.-
T Consensus 31 ~~~~livtd~~~~----~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG-Gsv~D~aK 105 (386)
T 1rrm_A 31 YQKALIVTDKTLV----QCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG-GSPQDTCK 105 (386)
T ss_dssp CCEEEEECBHHHH----HTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEECcchh----hchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC-hHHHHHHH
Confidence 3689998865431 111447899999999998765531 23344556666665567899999998 77766654
Q ss_pred HHhcC---cC----cc-------cccCCcEEEecC
Q 011517 185 GLLER---ED----WN-------DAIKVPLGVVPA 205 (484)
Q Consensus 185 gL~~~---~~----~~-------~~~~~pigiIP~ 205 (484)
.+... +. |+ ....+|+..||.
T Consensus 106 ~iA~~~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 140 (386)
T 1rrm_A 106 AIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPT 140 (386)
T ss_dssp HHHHHHHCGGGTTSGGGSEECCCCSCCSCEEEEEC
T ss_pred HHHHHHhCCCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 43221 10 10 023689999998
No 19
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=90.71 E-value=0.81 Score=46.31 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=62.0
Q ss_pred HhhhhcCCCcEEEEEEcCCCCCcchhhc-hHHhHHHHHHhcCCeEEEEe----cCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 101 DFIDSFGRPKRLYIFVNPFGGKKIASKI-FLDDVKPLLEDANIQFTVQE----TTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 101 ~~~~~~~~~~r~lviiNP~sG~~~a~~~-~~~~v~p~l~~ag~~~~v~~----T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
+.+...+ .+|++|+..+.- .+. +.+++...|+.+|+++.++. -.......+.++.+...++|.||.+||
T Consensus 24 ~~~~~~g-~~~~liVtd~~~-----~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 97 (383)
T 3ox4_A 24 KDLNGSG-FKNALIVSDAFM-----NKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGG 97 (383)
T ss_dssp HTTTTSC-CCEEEEEEEHHH-----HHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHcC-CCEEEEEECCch-----hhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 3443333 478999987631 122 44789999999999886652 123344555665555567899999999
Q ss_pred CChHHHHHHHHhc---Cc--Ccc-------cccCCcEEEecCC
Q 011517 176 DGILVEVVNGLLE---RE--DWN-------DAIKVPLGVVPAG 206 (484)
Q Consensus 176 DGtl~evingL~~---~~--~~~-------~~~~~pigiIP~G 206 (484)
|++.++.-.+.. .+ -|+ ....+|+..||.=
T Consensus 98 -Gsv~D~aK~ia~~~~~~~~~~d~~~~~~~~~~~~p~i~IPTT 139 (383)
T 3ox4_A 98 -GSPHDCAKAIALVATNGGEVKDYEGIDKSKKPALPLMSINTT 139 (383)
T ss_dssp -HHHHHHHHHHHHHHHSCSSGGGGCEESCCSSCCSCEEEEECS
T ss_pred -cHHHHHHHHHHHHHhCCCCHHHHhcccccccCCCCEEEEeCC
Confidence 777776554322 11 011 0236899999983
No 20
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=89.50 E-value=1.3 Score=45.03 Aligned_cols=92 Identities=20% Similarity=0.234 Sum_probs=59.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+.+-... -+.+++...|+.+|+++.++.- .......++++.+...++|.||.+|| |++-++.-.
T Consensus 44 ~r~liVtd~~~~~~~---g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 119 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKN---GVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG-GSVVDSAKA 119 (407)
T ss_dssp CEEEEEECSSHHHHS---SHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHHH
T ss_pred CeEEEEECchHHhhc---cHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC-hhHHHHHHH
Confidence 689999864322111 1346899999999998876532 23345566666666678899999998 676666554
Q ss_pred HhcC---c--Ccc-------cccCCcEEEecC
Q 011517 186 LLER---E--DWN-------DAIKVPLGVVPA 205 (484)
Q Consensus 186 L~~~---~--~~~-------~~~~~pigiIP~ 205 (484)
+... + -|+ ....+|+..||.
T Consensus 120 iA~~~~~~~~~~d~~~~~~~~~~~~p~i~IPT 151 (407)
T 1vlj_A 120 VAAGALYEGDIWDAFIGKYQIEKALPIFDVLT 151 (407)
T ss_dssp HHHHTTCSSCGGGGGGTSCCCCCCCCEEEEEC
T ss_pred HHHHHhCCCCHHHHhcccccCCCCCCEEEEeC
Confidence 4321 0 011 013689999997
No 21
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=89.09 E-value=1 Score=45.30 Aligned_cols=85 Identities=14% Similarity=0.173 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC------hhHHHHHHHH---hhcCCCceEEEEcCCChHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ------QLHAKEIVKV---LDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~------~~~a~~l~~~---~~~~~~d~IV~vGGDGtl~ 180 (484)
+|++|+.++...+ .+ +++...|+.+|+++.++.-.. .....++.+. ....+.|.||.+|| |.+.
T Consensus 44 ~rvlIVtd~~v~~-----~~-~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-Gsv~ 116 (368)
T 3qbe_A 44 HKVAVVHQPGLAE-----TA-EEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-GAAT 116 (368)
T ss_dssp SEEEEEECGGGHH-----HH-HHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHH
T ss_pred CEEEEEECccHHH-----HH-HHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHH
Confidence 8999999886432 24 689999999999886554322 1233344333 33456799999998 7777
Q ss_pred HHHHHHhcCcCcccccCCcEEEecC
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++.-...... ...+|+..||.
T Consensus 117 D~ak~~Aa~~----~rgip~i~IPT 137 (368)
T 3qbe_A 117 DVAGFAAATW----LRGVSIVHLPT 137 (368)
T ss_dssp HHHHHHHHHG----GGCCEEEEEEC
T ss_pred HHHHHHHHHh----ccCCcEEEECC
Confidence 7765554211 12689999997
No 22
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=88.55 E-value=0.66 Score=48.08 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=56.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE--EEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~--v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|++|+..+..-+ .+.+++...|+.+|+++. ++.-+... ...++++.+.. +.|.||.+|| |++.++.-.+
T Consensus 92 ~rvlIVtd~~~~~-----~~~~~v~~~L~~~gi~~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGG-GSviD~AK~i 164 (450)
T 1ta9_A 92 KSAVVLADQNVWN-----ICANKIVDSLSQNGMTVTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGG-GKTMDSAKYI 164 (450)
T ss_dssp SEEEEEEEHHHHH-----HTHHHHHHHHHHTTCEEEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEES-HHHHHHHHHH
T ss_pred CEEEEEECccHHH-----HHHHHHHHHHHHCCCeEEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCC-cHHHHHHHHH
Confidence 4899998765433 245789999999998873 33222222 34444444444 8899999998 7888877666
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+..||.
T Consensus 165 A~~------~giP~I~IPT 177 (450)
T 1ta9_A 165 AHS------MNLPSIICPT 177 (450)
T ss_dssp HHH------TTCCEEEEES
T ss_pred HHh------cCCCEEEEeC
Confidence 532 2689999997
No 23
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=87.43 E-value=0.58 Score=46.88 Aligned_cols=83 Identities=17% Similarity=0.147 Sum_probs=56.2
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+..+.. . .. .+++...|+..+ +.++.- .......+.++.+...++|.||.+|| |++.++.-
T Consensus 34 ~~r~liVtd~~~----~-~~-~~~v~~~L~~~~--~~v~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK 104 (353)
T 3hl0_A 34 LSRALVLSTPQQ----K-GD-AEALASRLGRLA--AGVFSEAAMHTPVEVTKTAVEAYRAAGADCVVSLGG-GSTTGLGK 104 (353)
T ss_dssp CCCEEEECCGGG----H-HH-HHHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHTTCSEEEEEES-HHHHHHHH
T ss_pred CCEEEEEecCch----h-hH-HHHHHHHHhhCC--cEEecCcCCCCcHHHHHHHHHHHhccCCCEEEEeCC-cHHHHHHH
Confidence 367899887642 2 23 368888888764 333321 12334556666665578999999999 89888887
Q ss_pred HHhcCcCcccccCCcEEEecCC
Q 011517 185 GLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~G 206 (484)
.+... ..+|+..||.=
T Consensus 105 ~iA~~------~~~p~i~IPTT 120 (353)
T 3hl0_A 105 AIALR------TDAAQIVIPTT 120 (353)
T ss_dssp HHHHH------HCCEEEEEECS
T ss_pred HHHhc------cCCCEEEEeCC
Confidence 76543 26899999974
No 24
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=86.90 E-value=1.1 Score=45.64 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+.++.+-+.. -+.+++...|+ |+++.++.- .......++++.+...++|.||.+|| |++-++.-.
T Consensus 51 ~r~liVtd~~~~~~~---g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~AK~ 124 (408)
T 1oj7_A 51 ARVLITYGGGSVKKT---GVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGG-GSVLDGTKF 124 (408)
T ss_dssp CEEEEEECSSHHHHH---SHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCchhhhc---cHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCC-chHHHHHHH
Confidence 789999866432211 13367777786 787766532 23344555655555567899999998 676666554
Q ss_pred Hhc---CcC----cc--------cccCCcEEEecC
Q 011517 186 LLE---RED----WN--------DAIKVPLGVVPA 205 (484)
Q Consensus 186 L~~---~~~----~~--------~~~~~pigiIP~ 205 (484)
+.. .+. |+ ....+|+..||.
T Consensus 125 iA~~~~~~~~~~~~d~~~~~~~~~~~~~p~i~IPT 159 (408)
T 1oj7_A 125 IAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLT 159 (408)
T ss_dssp HHHHTTSCTTSCTTHHHHTTTTTCCCCCCEEEEES
T ss_pred HHHHHhCCCCCCHHHHhccccCcCCCCCCEEEEeC
Confidence 433 111 10 114689999998
No 25
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside, 2-deoxystreptamine, dehydroquinate synthase, lyase; HET: NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Probab=85.80 E-value=2.2 Score=42.73 Aligned_cols=87 Identities=10% Similarity=0.049 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cC----ChhHHHHHHHHh---hcCCCceEEEEcCCCh
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TT----QQLHAKEIVKVL---DLSKYDGIVCVSGDGI 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~----~~~~a~~l~~~~---~~~~~d~IV~vGGDGt 178 (484)
..+|++|+.++...+ .|.+++...|+.+ +++.++. .. ......++.+.+ ..++.|.||.+|| |+
T Consensus 33 ~~~k~liVtd~~v~~-----~~~~~v~~~L~~~-~~~~~~~~~~ge~~k~~~~v~~~~~~~~~~~~~r~d~iIalGG-Gs 105 (368)
T 2gru_A 33 EFDQYIMISDSGVPD-----SIVHYAAEYFGKL-APVHILRFQGGEEYKTLSTVTNLQERAIALGANRRTAIVAVGG-GL 105 (368)
T ss_dssp SCSEEEEEEETTSCH-----HHHHHHHHHHTTT-SCEEEEEECCSGGGCSHHHHHHHHHHHHHTTCCTTEEEEEEES-HH
T ss_pred CCCEEEEEECCcHHH-----HHHHHHHHHHHhc-cceeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCcEEEEECC-hH
Confidence 357999999987653 2457888889877 6664322 11 222334444333 3345799999998 78
Q ss_pred HHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 179 LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 179 l~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.++.-...... ...+|+..||.
T Consensus 106 v~D~ak~~Aa~~----~rgip~i~IPT 128 (368)
T 2gru_A 106 TGNVAGVAAGMM----FRGIALIHVPT 128 (368)
T ss_dssp HHHHHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHHHHh----cCCCCEEEECC
Confidence 777765554211 12689999997
No 26
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=85.33 E-value=0.74 Score=46.18 Aligned_cols=82 Identities=17% Similarity=0.202 Sum_probs=55.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC----ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|++|+..|.. . .. .+++...|+.++ +.++.-. ......+.++.+...+.|.||.+|| |++.++.-
T Consensus 36 ~~r~liVtd~~~----~-~~-~~~v~~~L~~~~--~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-GsviD~aK 106 (358)
T 3jzd_A 36 AKRALVLCTPNQ----Q-AE-AERIADLLGPLS--AGVYAGAVMHVPIESARDATARAREAGADCAVAVGG-GSTTGLGK 106 (358)
T ss_dssp CSCEEEECCGGG----H-HH-HHHHHHHHGGGE--EEEECCCCTTCBHHHHHHHHHHHHHHTCSEEEEEES-HHHHHHHH
T ss_pred CCeEEEEeCCcH----H-HH-HHHHHHHhccCC--EEEecCCcCCCCHHHHHHHHHHhhccCCCEEEEeCC-cHHHHHHH
Confidence 367999987642 2 23 368888888764 3343211 2334455555555567899999999 89888887
Q ss_pred HHhcCcCcccccCCcEEEecC
Q 011517 185 GLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~ 205 (484)
.+... ..+|+..||.
T Consensus 107 ~iA~~------~~~p~i~IPT 121 (358)
T 3jzd_A 107 AIALE------TGMPIVAIPT 121 (358)
T ss_dssp HHHHH------HCCCEEEEEC
T ss_pred HHHhc------cCCCEEEEeC
Confidence 76543 2689999998
No 27
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=82.97 E-value=0.6 Score=47.07 Aligned_cols=84 Identities=12% Similarity=0.296 Sum_probs=55.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
+|++|+..+..- ...+.+++...|+.+|+.+.++.-+... ...++++.+.. +.|.||.+|| |++.++.-.+..
T Consensus 42 ~~~liVtd~~~~----~~~~~~~v~~~L~~~g~~~~~~~ge~~~~~v~~~~~~~~~-~~d~IIavGG-Gsv~D~aK~iA~ 115 (376)
T 1kq3_A 42 ERAFVVIDDFVD----KNVLGENFFSSFTKVRVNKQIFGGECSDEEIERLSGLVEE-ETDVVVGIGG-GKTLDTAKAVAY 115 (376)
T ss_dssp SEEEEEECHHHH----HHTTCTTGGGGCSSSEEEEEECCSSCBHHHHHHHHTTCCT-TCCEEEEEES-HHHHHHHHHHHH
T ss_pred CeEEEEECccHH----hhccHHHHHHHHHHcCCeEEEeCCCCCHHHHHHHHHHHhc-CCCEEEEeCC-cHHHHHHHHHHH
Confidence 789999876422 1111357777787777666554333333 34444444444 8899999998 788887766653
Q ss_pred CcCcccccCCcEEEecC
Q 011517 189 REDWNDAIKVPLGVVPA 205 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~ 205 (484)
. ..+|+..||.
T Consensus 116 ~------~~~p~i~IPT 126 (376)
T 1kq3_A 116 K------LKKPVVIVPT 126 (376)
T ss_dssp H------TTCCEEEEES
T ss_pred h------cCCCEEEecC
Confidence 2 2689999997
No 28
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=81.97 E-value=3.2 Score=41.31 Aligned_cols=86 Identities=12% Similarity=0.190 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcC-CeEEEEec----CChhHHHHHHHHhhcCCC---ceEEEEcCCChHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDAN-IQFTVQET----TQQLHAKEIVKVLDLSKY---DGIVCVSGDGILVE 181 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag-~~~~v~~T----~~~~~a~~l~~~~~~~~~---d~IV~vGGDGtl~e 181 (484)
+|++|+.++... . .+.+++...| .+| +.+.++.- .......++.+.+...+. |.||.+|| |++.+
T Consensus 32 ~~~liVtd~~~~----~-~~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D 104 (354)
T 1xah_A 32 DQSFLLIDEYVN----Q-YFANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGG-GATGD 104 (354)
T ss_dssp SCEEEEEEHHHH----H-HHHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHHHTTCCCTTCEEEEEES-HHHHH
T ss_pred CeEEEEECCcHH----H-HHHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCCCCceEEEECC-hHHHH
Confidence 789999886422 2 2557888888 777 33333321 133344555555554455 89999998 77777
Q ss_pred HHHHHhcCcCcccccCCcEEEecCC
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP~G 206 (484)
+.-.+.... ...+|+..||.=
T Consensus 105 ~ak~vA~~~----~rgip~i~IPTT 125 (354)
T 1xah_A 105 FAGFVAATL----LRGVHFIQVPTT 125 (354)
T ss_dssp HHHHHHHHB----TTCCEEEEEECS
T ss_pred HHHHHHHHh----ccCCCEEEECCc
Confidence 665554211 127899999983
No 29
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=78.93 E-value=17 Score=33.61 Aligned_cols=87 Identities=15% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.|++...+.. --..++ +-++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+. .+.++.
T Consensus 5 ~~s~~Igvi~~~~~~~-~~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDY-FSTELF-KGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCCEEEEEESCTTSH-HHHHHH-HHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCCcEEEEEeCCCCch-HHHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 4566777777443222 222233 5677888889999888776643 2334566677667899999999998 777777
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
|... .+|+-.+=
T Consensus 81 l~~~-------~iPvV~i~ 92 (276)
T 3jy6_A 81 ILHQ-------QMPVVSVD 92 (276)
T ss_dssp HHTT-------SSCEEEES
T ss_pred HHHC-------CCCEEEEe
Confidence 7654 67877663
No 30
>3clh_A 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, DHQS, amino-acid biosynthesis, cytoplasm, lyase, NAD; HET: NAD; 2.40A {Helicobacter pylori}
Probab=78.26 E-value=1.9 Score=42.88 Aligned_cols=87 Identities=11% Similarity=0.130 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC----ChhHHHHHHHHhhcCCC---ceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT----QQLHAKEIVKVLDLSKY---DGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~----~~~~a~~l~~~~~~~~~---d~IV~vGGDGtl~e 181 (484)
.+|++|+.++...+ .+.+++...|+.+++.+.++... ......++.+.+...+. |.||.+|| |.+.+
T Consensus 26 ~~~~livtd~~v~~-----~~~~~v~~~L~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~iIavGG-Gsv~D 99 (343)
T 3clh_A 26 KQKALIISDSIVAG-----LHLPYLLERLKALEVRVCVIESGEKYKNFHSLERILNNAFEMQLNRHSLMIALGG-GVISD 99 (343)
T ss_dssp SSCEEEEEEHHHHT-----TTHHHHHTTEECSCEEEEEECSSGGGCSHHHHHHHHHHHHHTTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHHH-----HHHHHHHHHHHhCCcEEEEeCCCCCCCCHHHHHHHHHHHHhcCCCCCceEEEECC-hHHHH
Confidence 46788988765432 24467777776665554443222 23344555555544445 99999998 77777
Q ss_pred HHHHHhcCcCcccccCCcEEEecC
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.-.+.... ...+|+..||.
T Consensus 100 ~ak~~A~~~----~rgip~i~IPT 119 (343)
T 3clh_A 100 MVGFASSIY----FRGIDFINIPT 119 (343)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEeCC
Confidence 665544211 12689999995
No 31
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=75.68 E-value=1.2 Score=44.65 Aligned_cols=79 Identities=16% Similarity=0.238 Sum_probs=50.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+|++|+..+. .. ..+ +++...|+. +.++.- .......+.++.+...++|.||.+|| |++.++...
T Consensus 38 ~rvliVtd~~----~~-~~~-~~v~~~L~~----~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG-Gs~iD~aK~ 106 (364)
T 3iv7_A 38 AKVMVIAGER----EM-SIA-HKVASEIEV----AIWHDEVVMHVPIEVAERARAVATDNEIDLLVCVGG-GSTIGLAKA 106 (364)
T ss_dssp SSEEEECCGG----GH-HHH-HHHTTTSCC----SEEECCCCTTCBHHHHHHHHHHHHHTTCCEEEEEES-HHHHHHHHH
T ss_pred CEEEEEECCC----HH-HHH-HHHHHHcCC----CEEEcceecCCCHHHHHHHHHHHHhcCCCEEEEeCC-cHHHHHHHH
Confidence 6788887764 21 233 455555542 222211 22444556666665678999999999 888888877
Q ss_pred HhcCcCcccccCCcEEEecC
Q 011517 186 LLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~ 205 (484)
+... ..+|+..||.
T Consensus 107 iA~~------~~~P~i~IPT 120 (364)
T 3iv7_A 107 IAMT------TALPIVAIPT 120 (364)
T ss_dssp HHHH------HCCCEEEEEC
T ss_pred HHhc------cCCCEEEEcC
Confidence 6543 2689999998
No 32
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=75.20 E-value=24 Score=31.28 Aligned_cols=75 Identities=7% Similarity=0.091 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~-IV~vGGDGtl~eving 185 (484)
.++.||. |...-..+ .++....|++.|++|++.+. +.+.+..+++++....+++. |+++||.|-|--++-+
T Consensus 13 P~V~Iim----GS~SD~~v-~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~ 87 (173)
T 4grd_A 13 PLVGVLM----GSSSDWDV-MKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAA 87 (173)
T ss_dssp CSEEEEE----SSGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHH
T ss_pred CeEEEEe----CcHhHHHH-HHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchhhhee
Confidence 3577776 33333333 36888999999999988655 33456678888887667774 5667999999999999
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+...
T Consensus 88 ~t~~ 91 (173)
T 4grd_A 88 KTTV 91 (173)
T ss_dssp HCCS
T ss_pred cCCC
Confidence 8653
No 33
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.30 E-value=11 Score=34.77 Aligned_cols=87 Identities=7% Similarity=0.123 Sum_probs=56.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
.+++.|++...+..- -.. +.+-++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+..-.+.++.+.
T Consensus 2 s~~Igvi~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 2 TRTLGFILPDLENPS-YAR-IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CCEEEEEESCTTCHH-HHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred ceEEEEEeCCCcChh-HHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 456777775443322 222 33577888888999988877764 333445666666678999999998844355666665
Q ss_pred cCcCcccccCCcEEEec
Q 011517 188 EREDWNDAIKVPLGVVP 204 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP 204 (484)
.. .+|+-.+=
T Consensus 80 ~~-------~iPvV~~~ 89 (272)
T 3o74_A 80 DK-------GLPVIAID 89 (272)
T ss_dssp HT-------TCCEEEES
T ss_pred Hc-------CCCEEEEc
Confidence 44 57776653
No 34
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=72.79 E-value=18 Score=33.61 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChH-HHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVN 184 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evin 184 (484)
++.+++.|++...+.. --..+ .+-++..+++.|+++.+..+... ....+..+.+...++|+||+.+.|... .+.++
T Consensus 6 ~~~~~Ig~i~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHE-FAQRL-INAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp ---CEEEEEESCSCSH-HHHHH-HHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCCcEEEEEEecCCcH-HHHHH-HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 4566777777543322 22223 35678888889999888777643 233456666666789999999887654 36677
Q ss_pred HHhcCcCcccccCCcEEEecC
Q 011517 185 GLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~ 205 (484)
.+... ++|+-.+=.
T Consensus 84 ~~~~~-------~iPvV~~~~ 97 (293)
T 3l6u_A 84 EAKKA-------GIPVFAIDR 97 (293)
T ss_dssp HHHHT-------TCCEEEESS
T ss_pred HHHHc-------CCCEEEecC
Confidence 66554 678777643
No 35
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=72.76 E-value=20 Score=33.24 Aligned_cols=90 Identities=14% Similarity=0.018 Sum_probs=57.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~eving 185 (484)
+.+++.|++...+..- -.. +.+-++..+++.|+++.+..+... ....+..+.+...++|+||+.+.|.. ..+.++.
T Consensus 4 ~~~~Ig~i~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 4 EGKTIGITAIGTDHDW-DLK-AYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TTCEEEEEESCCSSHH-HHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChH-HHH-HHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 4566777765433221 122 335778888889999888766543 23345566666678999999999853 5566666
Q ss_pred HhcCcCcccccCCcEEEecCC
Q 011517 186 LLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~G 206 (484)
+... ++|+-.+-..
T Consensus 82 ~~~~-------~iPvV~~~~~ 95 (291)
T 3l49_A 82 INDA-------GIPLFTVDTA 95 (291)
T ss_dssp HHHT-------TCCEEEESCC
T ss_pred HHHC-------CCcEEEecCC
Confidence 6554 6787666443
No 36
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=71.27 E-value=29 Score=32.63 Aligned_cols=87 Identities=13% Similarity=0.053 Sum_probs=56.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLL 187 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~ 187 (484)
+++.|++...+..-- ..+ .+-++..+++.|+++.+..+... ....+..+.+...++|+||+.+.|.. +.+.+..+.
T Consensus 3 ~~Igvi~~~~~~~~~-~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 3 VKIGMAIDDLRLERW-QKD-RDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp CEEEEEESCCSSSTT-HHH-HHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHH
T ss_pred cEEEEEeCCCCChHH-HHH-HHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHH
Confidence 456666643333322 223 35788888899998888776532 23345666666678999999998875 357777776
Q ss_pred cCcCcccccCCcEEEecC
Q 011517 188 EREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~ 205 (484)
+. ++|+-.+-.
T Consensus 81 ~~-------~iPvV~~~~ 91 (313)
T 3m9w_A 81 QE-------GIKVLAYDR 91 (313)
T ss_dssp TT-------TCEEEEESS
T ss_pred HC-------CCeEEEECC
Confidence 54 677766644
No 37
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=71.13 E-value=7.1 Score=38.38 Aligned_cols=53 Identities=21% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.-.++++.+...+.|.+|++|||||+.-+ +.|.+. .+|+--||.==-||+...
T Consensus 82 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~-------~i~vvgiPkTIDNDl~~t 134 (320)
T 1pfk_A 82 IRAVAIENLKKRGIDALVVIGGDGSYMGA-MRLTEM-------GFPCIGLPGTIDNDIKGT 134 (320)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECHHHHHHH-HHHHHT-------TCCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEECCCchHHHH-HHHHhh-------CCCEEEEeccccCCCCCC
Confidence 34456666666788999999999998654 455543 689999999999999853
No 38
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=70.43 E-value=16 Score=34.14 Aligned_cols=90 Identities=13% Similarity=0.210 Sum_probs=57.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.|++...+.. --..+ .+-++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+. ..+.+..
T Consensus 6 ~~~~~Igvv~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 6 KRSNVVGLIVSDIENV-FFAEV-ASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp -CCCEEEEEESCTTSH-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCCcEEEEEECCCcch-HHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 4567777777443322 22223 3577788888999988887754 33345566777667899999999887 3455555
Q ss_pred HhcCcCcccccCCcEEEecCC
Q 011517 186 LLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~G 206 (484)
+... .+|+-++-..
T Consensus 83 ~~~~-------~iPvV~~~~~ 96 (291)
T 3egc_A 83 ELPK-------TFPIVAVNRE 96 (291)
T ss_dssp SSCT-------TSCEEEESSC
T ss_pred hhcc-------CCCEEEEecc
Confidence 5433 6787766443
No 39
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=70.10 E-value=30 Score=32.05 Aligned_cols=86 Identities=10% Similarity=0.186 Sum_probs=56.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh----HHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI----LVEVVN 184 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt----l~evin 184 (484)
+++.|++...+..-- ..++ +-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.|.. ..+.+.
T Consensus 16 ~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~ 93 (298)
T 3tb6_A 16 KTIGVLTTYISDYIF-PSII-RGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYL 93 (298)
T ss_dssp CEEEEEESCSSSTTH-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHH
T ss_pred ceEEEEeCCCCchHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHH
Confidence 667777654433322 2233 577888888999988877653 333345666666679999999998863 335666
Q ss_pred HHhcCcCcccccCCcEEEec
Q 011517 185 GLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP 204 (484)
.+... ++|+-.+=
T Consensus 94 ~~~~~-------~iPvV~~~ 106 (298)
T 3tb6_A 94 NLEKN-------GIPFAMIN 106 (298)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHHhc-------CCCEEEEe
Confidence 66554 57776663
No 40
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=69.82 E-value=9.9 Score=38.17 Aligned_cols=88 Identities=9% Similarity=0.170 Sum_probs=49.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHHHhh---cCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVKVLD---LSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~~~~---~~~~d~IV~vGGDGtl~e 181 (484)
.++++|+..|.--+ ..+...|+.+++++.++.- .......++++.+. ..+.|.||.+|| |++.+
T Consensus 53 ~~~~liVtd~~~~~--------~~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIavGG-GS~iD 123 (375)
T 3rf7_A 53 NDFVVFLVDDVHQH--------KPLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGLGG-GSTMD 123 (375)
T ss_dssp TCCEEEEEEGGGTT--------SHHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEEES-HHHHH
T ss_pred CCeEEEEECchhhh--------hHHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEeCC-cHHHH
Confidence 36788888764211 1345566677888765421 12223334443333 334999999999 77777
Q ss_pred HHHHHhcC---cC-------cc--cccCCcEEEecC
Q 011517 182 VVNGLLER---ED-------WN--DAIKVPLGVVPA 205 (484)
Q Consensus 182 vingL~~~---~~-------~~--~~~~~pigiIP~ 205 (484)
+.-.+... +. |+ ....+|+..||.
T Consensus 124 ~AK~iA~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 159 (375)
T 3rf7_A 124 LAKAVSLMLTNPGSSSEYQGWDLIKNPAVHHIGIPT 159 (375)
T ss_dssp HHHHHHHHTSSCSCGGGGCEESCCCSCCCCEEEEES
T ss_pred HHHHHHHHHhCCCCHHHhhccccccCCCCCEEEEcC
Confidence 66554321 10 10 112589999996
No 41
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=69.03 E-value=21 Score=33.55 Aligned_cols=77 Identities=14% Similarity=0.119 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+..||+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++. .++|+|++ +.|.+...++..+
T Consensus 131 pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 205 (295)
T 3lft_A 131 PNVKTIGALYSSSED--NSKTQV-EEFKAYAEKAGLTVETFAVPSTNEIASTVTVMT-SKVDAIWV-PIDNTIASGFPTV 205 (295)
T ss_dssp TTCCEEEEEEETTCH--HHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHT-TTCSEEEE-CSCHHHHHTHHHH
T ss_pred CCCcEEEEEeCCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCCHHHHHHHHHHHH-hcCCEEEE-CCchhHHHHHHHH
Confidence 456899999998542 233233 467778889999876655555566777777765 57888776 6788877666666
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 206 ~~ 207 (295)
T 3lft_A 206 VS 207 (295)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 42
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=68.32 E-value=37 Score=29.83 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=46.0
Q ss_pred HHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHHhc
Q 011517 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL~~ 188 (484)
.++....|+..|++|++... +.+.+..++++++...+++ .|+++|+.+-|--++-++..
T Consensus 19 ~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~ 81 (163)
T 3ors_A 19 MQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTT 81 (163)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccC
Confidence 46888899999999998765 3455667788877655566 46677999999999999864
No 43
>1pyo_A Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 3rjm_A* 2p2c_A 3r5j_A 3r6g_A 3r6l_A 3r7b_A 3r7n_A 3r7s_A
Probab=67.81 E-value=27 Score=30.73 Aligned_cols=64 Identities=9% Similarity=0.036 Sum_probs=44.5
Q ss_pred HhhhhcCCCcEEEEEEcCCC-------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc
Q 011517 101 DFIDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL 164 (484)
Q Consensus 101 ~~~~~~~~~~r~lviiNP~s-------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~ 164 (484)
+.+.-..+|+++.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++..
T Consensus 24 ~~Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~ 94 (167)
T 1pyo_A 24 LAYRLQSRPRGLALVLSNVHFTGEKELEFRSGGDVDHSTLVTLFKLLGYDVHVLCDQTAQEMQEKLQNFAQ 94 (167)
T ss_dssp GBCCCCCSSSEEEEEEECCCCCSSSCSCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHT
T ss_pred ccccCCCCCceEEEEEeCcccCCCCCCccCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHhhh
Confidence 44554567788888887652 12333334456899999999999998877777777777776643
No 44
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=67.33 E-value=20 Score=33.61 Aligned_cols=90 Identities=10% Similarity=0.151 Sum_probs=55.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVN 184 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evin 184 (484)
+.+++.+++...+.. --..++ +-++..+++.|+++.++. +. ......+..+.+...++|+||+.+.|.. +.+.+.
T Consensus 3 ~~~~I~~i~~~~~~~-~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 3 LNETYMMITFQSGMD-YWKRCL-KGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp --CEEEEEESSTTST-HHHHHH-HHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHH
T ss_pred CCceEEEEEccCCCh-HHHHHH-HHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHH
Confidence 345666666443332 223333 577888888899887743 32 2233345556665568999999998875 456777
Q ss_pred HHhcCcCcccccCCcEEEecCC
Q 011517 185 GLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~G 206 (484)
.+... .+|+-.+-..
T Consensus 81 ~~~~~-------~iPvV~~~~~ 95 (305)
T 3g1w_A 81 KAVDA-------GIPIVLFDSG 95 (305)
T ss_dssp HHHHT-------TCCEEEESSC
T ss_pred HHHHC-------CCcEEEECCC
Confidence 66654 6787766443
No 45
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=66.96 E-value=31 Score=32.21 Aligned_cols=86 Identities=13% Similarity=0.013 Sum_probs=54.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChH-HHHHHHHhc
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VEVVNGLLE 188 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~evingL~~ 188 (484)
.++.+++.-.+.. --.. +.+-++..+++.|+++.+..+.......+.++.+...++|+||+.+-|... .+.+..+.+
T Consensus 3 ~~Ig~i~~~~~~~-~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (306)
T 8abp_A 3 LKLGFLVKQPEEP-WFQT-EWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 80 (306)
T ss_dssp EEEEEEESCTTSH-HHHH-HHHHHHHHHHHHTEEEEEEECCSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHH
T ss_pred eEEEEEeCCCCch-HHHH-HHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHH
Confidence 4566666433221 1122 234677778888988877777555555566677666789999999988753 445666654
Q ss_pred CcCcccccCCcEEEec
Q 011517 189 REDWNDAIKVPLGVVP 204 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP 204 (484)
. .+|+-.+=
T Consensus 81 ~-------~iPvV~~~ 89 (306)
T 8abp_A 81 Y-------DMKVIAVD 89 (306)
T ss_dssp T-------TCEEEEES
T ss_pred C-------CCcEEEeC
Confidence 4 67776664
No 46
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=66.43 E-value=20 Score=33.36 Aligned_cols=91 Identities=7% Similarity=0.035 Sum_probs=56.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecC----ChhHHHHHHHHhhcCCCceEEEEcCCCh-HH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETT----QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LV 180 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~----~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~ 180 (484)
++.+++.|++.......--..+ .+-++..+++. |+.+.+..+. ......+.++.+...++|+||+++.|.. ..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~-~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~ 84 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDV-QKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTK 84 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHH-HHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTH
T ss_pred CCcceEEEEecCCCCchHHHHH-HHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHH
Confidence 4566777777554122222223 34677778877 8888776552 3333345667776679999999998874 45
Q ss_pred HHHHHHhcCcCcccccCCcEEEecC
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.++.+... ++|+-.+-.
T Consensus 85 ~~~~~~~~~-------~iPvV~~~~ 102 (304)
T 3gbv_A 85 GFTDALNEL-------GIPYIYIDS 102 (304)
T ss_dssp HHHHHHHHH-------TCCEEEESS
T ss_pred HHHHHHHHC-------CCeEEEEeC
Confidence 666666543 577766644
No 47
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=66.25 E-value=16 Score=30.75 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcC-CCceEEEEc---CC--ChHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS-KYDGIVCVS---GD--GILVEVV 183 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~-~~d~IV~vG---GD--Gtl~evi 183 (484)
++++|++=... |.+.+ +.+.+...|...|++++++...... .-++. ++|.||++. |+ |.+...+
T Consensus 2 ~ki~I~y~S~t--GnT~~-~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~g~pty~~~~G~~p~~~ 71 (148)
T 3f6r_A 2 SKVLIVFGSST--GNTES-IAQKLEELIAAGGHEVTLLNAADAS-------AENLADGYDAVLFGCSAWGMEDLEMQDDF 71 (148)
T ss_dssp CEEEEEEECSS--SHHHH-HHHHHHHHHHTTTCEEEEEETTTBC-------CTTTTTTCSEEEEEECEECSSSCEECHHH
T ss_pred CeEEEEEECCC--chHHH-HHHHHHHHHHhCCCeEEEEehhhCC-------HhHhcccCCEEEEEecccCCCCCCCcHHH
Confidence 46788875544 45554 4468888899999988887654321 11234 789887776 45 7766655
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchh
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNG 210 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~ 210 (484)
..++++-........+++++ ||||.
T Consensus 72 ~~fl~~l~~~~l~~k~~~vf--g~G~~ 96 (148)
T 3f6r_A 72 LSLFEEFDRIGLAGRKVAAF--ASGDQ 96 (148)
T ss_dssp HHHHTTGGGTCCTTCEEEEE--EEECT
T ss_pred HHHHHHhhccCCCCCEEEEE--EeCCC
Confidence 55555421111234677777 44543
No 48
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=66.24 E-value=24 Score=32.87 Aligned_cols=89 Identities=8% Similarity=0.081 Sum_probs=53.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.|++.-.+ ..--.. +.+-++..+++.|+++.+..+.. .....++.+.+...++|+||+++.+.+-.+++..
T Consensus 18 ~~~~~Ig~i~~~~~-~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 18 GRTRSIGLVIPDLE-NTSYTR-IANYLERQARQRGYQLLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CCCCEEEEEESCSC-SHHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHT
T ss_pred CCCcEEEEEeCCCc-CcHHHH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHH
Confidence 45667777774322 211122 23466777888899888776654 2333456666666789999999887643334444
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+.. .++|+-.+-
T Consensus 96 ~~~-------~~iPvV~~~ 107 (293)
T 2iks_A 96 WAN-------DPFPIVALD 107 (293)
T ss_dssp TTT-------SSSCEEEEE
T ss_pred HHh-------CCCCEEEEC
Confidence 432 257776663
No 49
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=66.00 E-value=36 Score=32.67 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCCC-cchhhchHHhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhc--CCCceEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDL--SKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~-~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~--~~~d~IV~vGGDGtl~eving 185 (484)
+++. |+.|.... .--.. +.+-++..+++.|+++.+..+..... ..+.++++.. .++|+||+++.+....++++.
T Consensus 4 ~~Ig-~i~p~~~~~~f~~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~ 81 (350)
T 3h75_A 4 TSVV-FLNPGNSTETFWVS-YSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRL 81 (350)
T ss_dssp CEEE-EEECSCTTCHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHH
T ss_pred CEEE-EECCCCCCChHHHH-HHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHH
Confidence 3444 44555433 22222 33567777888899988876654322 2344555544 489999999744456677776
Q ss_pred HhcCcCcccccCCcEEEecCCC
Q 011517 186 LLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP~GS 207 (484)
+... .+|+-.+=...
T Consensus 82 ~~~~-------giPvV~~~~~~ 96 (350)
T 3h75_A 82 SQGS-------GIKLFIVNSPL 96 (350)
T ss_dssp HTTS-------CCEEEEEESCC
T ss_pred HHhC-------CCcEEEEcCCC
Confidence 6543 67776665443
No 50
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=65.90 E-value=7.4 Score=38.25 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=40.4
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
..-.++++.+...+.|.+|++|||||+.- ++.|.+. .+|+--||.==-||+..
T Consensus 80 ~~~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~-------~i~vvgiPkTIDNDl~~ 132 (319)
T 1zxx_A 80 EGQLAGIEQLKKHGIDAVVVIGGDGSYHG-ALQLTRH-------GFNSIGLPGTIDNDIPY 132 (319)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECHHHHHH-HHHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCchHHHH-HHHHHHh-------CCCEEEEeecccCCCCC
Confidence 34455666676678899999999999865 4445443 68999999999999875
No 51
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=65.85 E-value=42 Score=30.93 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcC--CCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP--~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
++.+++.+++.- .+.. -... +.+-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.|.. .+.+
T Consensus 17 ~~~~~Ig~i~~~~~~~~~-~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~ 93 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGI-YFSE-LLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLS-VDEI 93 (296)
T ss_dssp --CCEEEEEECGGGCC---CHHH-HHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHTTCSEEEEECSSSC-HHHH
T ss_pred CCCceEEEEeCCcccCCc-hHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC-hHHH
Confidence 345677777632 2221 1122 23466777888898887766543 233345666666678999999998755 3455
Q ss_pred HHHhc-CcCcccccCCcEEEec
Q 011517 184 NGLLE-REDWNDAIKVPLGVVP 204 (484)
Q Consensus 184 ngL~~-~~~~~~~~~~pigiIP 204 (484)
..+.+ . ++|+-.+-
T Consensus 94 ~~l~~~~-------~iPvV~~~ 108 (296)
T 3brq_A 94 DDIIDAH-------SQPIMVLN 108 (296)
T ss_dssp HHHHHTC-------SSCEEEES
T ss_pred HHHHhcC-------CCCEEEEc
Confidence 55543 2 57776663
No 52
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=65.81 E-value=35 Score=31.77 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=53.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++...+. .--.. +.+-++..+++.|+++.+..+... ....++.+.+...++|+||+.+.+.. .+.++.
T Consensus 14 ~~s~~Igvi~~~~~~-~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~ 90 (289)
T 2fep_A 14 KKTTTVGVIIPDISS-IFYSE-LARGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAE 90 (289)
T ss_dssp --CCEEEEEESCTTS-HHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCeEEEEeCCCCC-chHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHH
Confidence 556778888743222 11122 234667778888998877766532 23345566666678999999987755 455665
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+... .+|+-.+-
T Consensus 91 l~~~-------~iPvV~~~ 102 (289)
T 2fep_A 91 FKRS-------PVPIVLAA 102 (289)
T ss_dssp HHHS-------SSCEEEES
T ss_pred HHhc-------CCCEEEEc
Confidence 5433 57776663
No 53
>1ujn_A Dehydroquinate synthase; riken structu genomics/proteomics initiative, RSGI, structural genomics,; 1.80A {Thermus thermophilus} SCOP: e.22.1.1
Probab=65.19 E-value=17 Score=36.00 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----CChhHHHHHHH---HhhcCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----TQQLHAKEIVK---VLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----~~~~~a~~l~~---~~~~~~~d~IV~vGGDGtl~e 181 (484)
.+|++|+.++... + +.+++...|+ .+++ .++.- .......++.+ +...++.|.||.+|| |.+.+
T Consensus 28 ~~kvliVtd~~v~-----~-~~~~v~~~L~-~~~~-~~~~~ge~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gsv~D 98 (348)
T 1ujn_A 28 AGPAALLFDRRVE-----G-FAQEVAKALG-VRHL-LGLPGGEAAKSLEVYGKVLSWLAEKGLPRNATLLVVGG-GTLTD 98 (348)
T ss_dssp SSCEEEEEEGGGH-----H-HHHHHHHHHT-CCCE-EEECCSGGGSSHHHHHHHHHHHHHHTCCTTCEEEEEES-HHHHH
T ss_pred CCEEEEEECCcHH-----H-HHHHHHHHhc-cCeE-EEECCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEECC-cHHHH
Confidence 4689999886432 2 5567888887 5555 33321 12233444443 333345689999998 77777
Q ss_pred HHHHHhcCcCcccccCCcEEEecC
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP~ 205 (484)
+.-...... ...+|+..||.
T Consensus 99 ~ak~~A~~~----~rgip~i~IPT 118 (348)
T 1ujn_A 99 LGGFVAATY----LRGVAYLAFPT 118 (348)
T ss_dssp HHHHHHHHB----TTCCEEEEEEC
T ss_pred HHHHHHHHh----ccCCCEEEecC
Confidence 766554211 12689999996
No 54
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=65.17 E-value=24 Score=32.38 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=51.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+.+++.|++.-.+.. --.. +.+-++..+++.|+++.+..+.. .....+..+.+...+.|+||+++.+.. .+.+..+
T Consensus 2 ~s~~Ig~i~~~~~~~-~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l 78 (275)
T 3d8u_A 2 NAYSIALIIPSLFEK-ACAH-FLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLL 78 (275)
T ss_dssp --CEEEEEESCSSCH-HHHH-HHHHHHHHHHHTSCEECCEECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHH
T ss_pred CceEEEEEeCCCccc-cHHH-HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHH
Confidence 345677777433221 1122 23466777888898877766543 333445666766678999999998765 3555555
Q ss_pred hcCcCcccccCCcEEEe
Q 011517 187 LEREDWNDAIKVPLGVV 203 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiI 203 (484)
... ++|+-.+
T Consensus 79 ~~~-------~iPvV~~ 88 (275)
T 3d8u_A 79 EAS-------NTPVLEI 88 (275)
T ss_dssp HHH-------TCCEEEE
T ss_pred HhC-------CCCEEEE
Confidence 432 5777666
No 55
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=65.03 E-value=38 Score=31.56 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=53.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC-eEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~-~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL 186 (484)
+++.|++. .....--..+ .+-++..+++.|+ ++.+..+.. .....+..+.+...++|+||+.+.|.. ..+.+..+
T Consensus 3 ~~Igvi~~-~~~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 80 (309)
T 2fvy_A 3 TRIGVTIY-KYDDNFMSVV-RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKA 80 (309)
T ss_dssp EEEEEEES-CTTSHHHHHH-HHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHH
T ss_pred cEEEEEec-cCCcHHHHHH-HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHH
Confidence 45666653 3222111222 3466777888897 877766643 333345566666678999999998875 45667666
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... .+|+-.+-.
T Consensus 81 ~~~-------~iPvV~~~~ 92 (309)
T 2fvy_A 81 RGQ-------NVPVVFFNK 92 (309)
T ss_dssp HTT-------TCCEEEESS
T ss_pred HHC-------CCcEEEecC
Confidence 543 578776644
No 56
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=64.82 E-value=46 Score=29.74 Aligned_cols=71 Identities=18% Similarity=0.227 Sum_probs=52.7
Q ss_pred hHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 129 FLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
..+++...|+..|++|++... +.+....++++++...+.+ .|+++|+.+-|--++-++.. .|+--+|
T Consensus 28 v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~---------~PVIgVP 98 (183)
T 1o4v_A 28 VMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITH---------LPVIGVP 98 (183)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCS---------SCEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHHHHHhccC---------CCEEEee
Confidence 346888999999999998765 3456677888887655566 46678999999999999864 3555556
Q ss_pred CCCc
Q 011517 205 AGTG 208 (484)
Q Consensus 205 ~GSg 208 (484)
.-++
T Consensus 99 ~~~~ 102 (183)
T 1o4v_A 99 VKTS 102 (183)
T ss_dssp ECCT
T ss_pred CCCC
Confidence 6443
No 57
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=64.82 E-value=8.5 Score=37.82 Aligned_cols=67 Identities=18% Similarity=0.149 Sum_probs=44.1
Q ss_pred EEEEEcCCCCCcc-hhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHHhhcCCCceEEEE-cCCChH
Q 011517 112 LYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVCV-SGDGIL 179 (484)
Q Consensus 112 ~lviiNP~sG~~~-a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~IV~v-GGDGtl 179 (484)
-.-||-|.|+-+. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+...+.++|+|+ ||+|+.
T Consensus 14 ~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~~ 92 (327)
T 4h1h_A 14 EIRIIAPSRSIGIMADNQV-EIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSN 92 (327)
T ss_dssp EEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCSCGG
T ss_pred EEEEEeCCCCcCccCHHHH-HHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCCchhHH
Confidence 4567789887542 23334 466778899998776643222 2345666666666778888886 999973
No 58
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=64.64 E-value=21 Score=33.08 Aligned_cols=87 Identities=11% Similarity=0.219 Sum_probs=54.0
Q ss_pred CCCcEEEEEEcC-----CCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH-HHHHHHhhcCCCceEEEEcCCChHH
Q 011517 107 GRPKRLYIFVNP-----FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 107 ~~~~r~lviiNP-----~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a-~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
++.+++.|++.. .+.. -...+ .+-++..+++.|+++.+..+...... .++.+.+...++|+||+++.+.. .
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNP-FFPEV-IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTST-HHHHH-HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCCEEEEEecCCccccccCH-HHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 455667766654 2222 22223 35677888888988877666554332 44556666678999999887755 3
Q ss_pred HHHHHHhcCcCcccccCCcEEEe
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiI 203 (484)
+.+..+... .+|+-++
T Consensus 83 ~~~~~l~~~-------~iPvV~~ 98 (292)
T 3k4h_A 83 RIIQYLHEQ-------NFPFVLI 98 (292)
T ss_dssp HHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHC-------CCCEEEE
Confidence 566666544 5777665
No 59
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=64.34 E-value=16 Score=34.28 Aligned_cols=89 Identities=7% Similarity=0.087 Sum_probs=56.1
Q ss_pred CCCcEEEEEEcCCC---CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 107 GRPKRLYIFVNPFG---GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP~s---G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
++.+.+.|++.... ...--.. +.+-++..+++.|+.+.+..+.......++.+.+...++|+||+++.+..- +.+
T Consensus 4 ~~s~~Igvi~~~~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~ 81 (294)
T 3qk7_A 4 GRTDAIALAYPSRPRVLNNSTFLE-MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED-FRL 81 (294)
T ss_dssp -CCCEEEEEEESCSGGGSCHHHHH-HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC-HHH
T ss_pred CccceEEEEecCCCccccChhHHH-HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh-HHH
Confidence 45667777774211 1111122 234677788889999888877654445566666666789999999887543 566
Q ss_pred HHHhcCcCcccccCCcEEEec
Q 011517 184 NGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP 204 (484)
..|... .+|+-.+=
T Consensus 82 ~~l~~~-------~iPvV~~~ 95 (294)
T 3qk7_A 82 QYLQKQ-------NFPFLALG 95 (294)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHhC-------CCCEEEEC
Confidence 656543 57776653
No 60
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=64.00 E-value=61 Score=30.94 Aligned_cols=89 Identities=10% Similarity=0.072 Sum_probs=54.3
Q ss_pred CCcEEEEEEc--CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVN--PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiN--P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
.+.++.+++. +.+.+.--...+ +-++..+++.|+++.+..+....+..+..+.+...++|+||++|..- .+.+..
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~-~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~dgIi~~~~~~--~~~~~~ 79 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVW-EGISRFAQENNAKCKYVTASTDAEYVPSLSAFADENMGLVVACGSFL--VEAVIE 79 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHH-HHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHTTCSEEEEESTTT--HHHHHH
T ss_pred CCcEEEEEEcCCCCCCccHHHHHH-HHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEECChhH--HHHHHH
Confidence 3457778885 443322222233 35677788889988887776655555666777667899999997542 233444
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+... ..++|+.++=
T Consensus 80 ~a~~-----~p~~p~v~id 93 (318)
T 2fqx_A 80 TSAR-----FPKQKFLVID 93 (318)
T ss_dssp HHHH-----CTTSCEEEES
T ss_pred HHHH-----CCCCEEEEEc
Confidence 4321 1256777774
No 61
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=63.90 E-value=1.1e+02 Score=31.14 Aligned_cols=75 Identities=12% Similarity=0.062 Sum_probs=54.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCC-c-eEEEEcCCChHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKY-D-GIVCVSGDGILVEVVN 184 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~-d-~IV~vGGDGtl~evin 184 (484)
.++.||. |...-.. ..+++...|+..|++|++.+. ..+.+..++++++..... + .|+++||.|-|--|+.
T Consensus 266 ~~V~Ii~----gs~SD~~-~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpgvva 340 (425)
T 2h31_A 266 CRVVVLM----GSTSDLG-HCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVMS 340 (425)
T ss_dssp CEEEEEE----SCGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHH
T ss_pred CeEEEEe----cCcccHH-HHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHhHHh
Confidence 4677776 3222233 346888999999999988765 345667788888776666 3 5677799999999999
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
++...
T Consensus 341 ~~t~~ 345 (425)
T 2h31_A 341 GNTAY 345 (425)
T ss_dssp HHCSS
T ss_pred ccCCC
Confidence 98653
No 62
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=63.52 E-value=37 Score=31.42 Aligned_cols=87 Identities=14% Similarity=0.135 Sum_probs=52.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL 186 (484)
++++.+++. .....-... +.+-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.+.. +.+.+..+
T Consensus 2 ~~~Ig~i~~-~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 2 KGKMAIVIS-TLNNPWFVV-LAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp -CEEEEEES-CSSSHHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred ceEEEEEeC-CCCChHHHH-HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 345666663 322211222 23466777888899887776643 333345566666678999999987754 34556655
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
.+. ++|+-.+-
T Consensus 80 ~~~-------~iPvV~~~ 90 (290)
T 2fn9_A 80 KEA-------GIPVFCVD 90 (290)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCeEEEEe
Confidence 443 57776653
No 63
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=63.25 E-value=43 Score=29.57 Aligned_cols=73 Identities=12% Similarity=0.074 Sum_probs=51.6
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL 186 (484)
++.||. |...-.. ..++....|+.-|++|++... +.+....++++++...+.+ .|.++||.+-|--++-++
T Consensus 13 ~V~Iim----GS~SD~~-v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 87 (170)
T 1xmp_A 13 LVGVIM----GSTSDWE-TMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAK 87 (170)
T ss_dssp SEEEEE----SSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHTT
T ss_pred cEEEEE----CcHHHHH-HHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhc
Confidence 455665 3322233 346888899999999998765 3456677788877655566 466789999999999888
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 88 t~ 89 (170)
T 1xmp_A 88 TN 89 (170)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 64
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=62.23 E-value=40 Score=29.90 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL 186 (484)
++.||. |...-..+ .+++...|+..|++|++.+. +.+.+..++++++...+.+ .|+++|+.+-|--++-++
T Consensus 9 ~V~Iim----gS~SD~~v-~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 83 (174)
T 3lp6_A 9 RVGVIM----GSDSDWPV-MADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPGMVAAA 83 (174)
T ss_dssp SEEEEE----SCGGGHHH-HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHHHHHHH
T ss_pred eEEEEE----CcHHhHHH-HHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHHHHHhc
Confidence 466665 32222333 46888999999999988765 3455677888777655566 566779999999999998
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 84 t~ 85 (174)
T 3lp6_A 84 TP 85 (174)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 65
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=62.22 E-value=59 Score=31.06 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=54.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.+++.-.+..- -..++ +-++..+++.|+.+.+..+.. .....+..+.+...++|+||+++.+..- +.+..
T Consensus 66 ~~~~~Ig~i~~~~~~~~-~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~ 142 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMV-FPEVL-TGINQVLEDTELQPVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAM 142 (344)
T ss_dssp SCCSEEEEEESCSSSSS-HHHHH-HHHHHHHTSSSSEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCcHH-HHHHH-HHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHH
Confidence 34556777764333221 22233 467777888898887776654 3334456666666789999999887654 55555
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
|... .+|+-.+
T Consensus 143 l~~~-------~iPvV~i 153 (344)
T 3kjx_A 143 LDAA-------GIPVVEI 153 (344)
T ss_dssp HHHC-------SSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5443 6787776
No 66
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=62.11 E-value=26 Score=33.07 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+..||+.+|.+|... .+...+ +..+..++++|+++.........+..+.++++. .++|+|++ ..|.+.-.++..+
T Consensus 138 Pg~~~I~~i~~~~~~--~~~~r~-~g~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~-~~~dai~~-~~D~~a~g~~~~l 212 (302)
T 2qh8_A 138 PNVKSIGVVYNPGEA--NAVSLM-ELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIYA-LIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCH--HHHHHH-HHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHG-GGCSEEEE-CSCHHHHTTHHHH
T ss_pred CCCcEEEEEecCCCc--chHHHH-HHHHHHHHHcCCEEEEEecCChHHHHHHHHHHh-ccCCEEEE-CCcHhHHHHHHHH
Confidence 457899999998642 233333 466778889999887665555667777777775 47887766 6787765544444
Q ss_pred h
Q 011517 187 L 187 (484)
Q Consensus 187 ~ 187 (484)
.
T Consensus 213 ~ 213 (302)
T 2qh8_A 213 I 213 (302)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=61.97 E-value=42 Score=31.02 Aligned_cols=86 Identities=9% Similarity=0.183 Sum_probs=52.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.|++. .....--.. +.+-++..+++.|+++.+..+... ....++.+.+...++|+||+++.+.. .+.+..
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 82 (285)
T 3c3k_A 6 AKTGMLLVMVS-NIANPFCAA-VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE-LPELQN 82 (285)
T ss_dssp -CCCEEEEEES-CTTSHHHHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHH
T ss_pred CCCCEEEEEeC-CCCCchHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHH
Confidence 45567777764 322211122 234667778888998877766432 23345566666678999999987654 355555
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
|. . ++|+-.+
T Consensus 83 l~-~-------~iPvV~~ 92 (285)
T 3c3k_A 83 II-G-------AFPWVQC 92 (285)
T ss_dssp HH-T-------TSSEEEE
T ss_pred Hh-c-------CCCEEEE
Confidence 54 3 5677665
No 68
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=61.87 E-value=35 Score=32.42 Aligned_cols=88 Identities=10% Similarity=0.093 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evi 183 (484)
++.+++.|++.. +.. -... +.+-++..+++. |+++.+..+.. .....+.++.+...++|+||+.+.+.. +.+.+
T Consensus 4 ~~~~~Igvi~~~-~~~-~~~~-~~~gi~~~a~~~~g~~l~i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~ 80 (325)
T 2x7x_A 4 TPHFRIGVAQCS-DDS-WRHK-MNDEILREAMFYNGVSVEIRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIV 80 (325)
T ss_dssp --CCEEEEEESC-CSH-HHHH-HHHHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHH
T ss_pred CCCeEEEEEecC-CCH-HHHH-HHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHH
Confidence 355677777643 111 1111 223456666677 88887766543 333345566665678999999988764 34556
Q ss_pred HHHhcCcCcccccCCcEEEec
Q 011517 184 NGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP 204 (484)
..+... ++|+-.+-
T Consensus 81 ~~~~~~-------~iPvV~~~ 94 (325)
T 2x7x_A 81 EEAYQK-------GIPVILVD 94 (325)
T ss_dssp HHHHHT-------TCCEEEES
T ss_pred HHHHHC-------CCeEEEeC
Confidence 655443 57876663
No 69
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.81 E-value=24 Score=27.11 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=38.3
Q ss_pred HHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHh
Q 011517 99 LRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL 162 (484)
Q Consensus 99 l~~~~~~~-~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~ 162 (484)
|++.+.+. ...+.+.||+|-.|-. .. ++....-...|+.|++..+..+.+..+-++++
T Consensus 40 irdiiksmkdngkplvvfvngasqn--dv----nefqneakkegvsydvlkstdpeeltqrvref 98 (112)
T 2lnd_A 40 IRDIIKSMKDNGKPLVVFVNGASQN--DV----NEFQNEAKKEGVSYDVLKSTDPEELTQRVREF 98 (112)
T ss_dssp HHHHHHHHTTCCSCEEEEECSCCHH--HH----HHHHHHHHHHTCEEEEEECCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEEecCcccc--cH----HHHHHHHHhcCcchhhhccCCHHHHHHHHHHH
Confidence 34444443 3456799999976542 22 23334455679999999999999887766665
No 70
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=61.79 E-value=37 Score=31.58 Aligned_cols=86 Identities=10% Similarity=0.121 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
++.+.+.|++ ..+..- -.. +.+-++..+++.|+++.+..+.......+..+.+...++|+||+++.|..- +.+..+
T Consensus 10 ~~~~~Igvi~-~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~ 85 (289)
T 3k9c_A 10 ASSRLLGVVF-ELQQPF-HGD-LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRFDT-DELGAL 85 (289)
T ss_dssp ---CEEEEEE-ETTCHH-HHH-HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCCCH-HHHHHH
T ss_pred CCCCEEEEEE-ecCCch-HHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHH
Confidence 4567888888 433221 122 335778888889999888777664445566677766789999999988764 555554
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
.. .+|+-++=
T Consensus 86 ~~--------~iPvV~i~ 95 (289)
T 3k9c_A 86 AD--------RVPALVVA 95 (289)
T ss_dssp HT--------TSCEEEES
T ss_pred Hc--------CCCEEEEc
Confidence 32 46766653
No 71
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=61.31 E-value=57 Score=29.12 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=53.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNG 185 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~eving 185 (484)
.++.||. |...-.. ..++....|+..|++|++.+. +.+.+..++++++...+.+ .|+++||.+-|--++-+
T Consensus 22 ~~V~Iim----GS~SD~~-v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~ 96 (182)
T 1u11_A 22 PVVGIIM----GSQSDWE-TMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPGMCAA 96 (182)
T ss_dssp CSEEEEE----SSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHH
T ss_pred CEEEEEE----CcHHHHH-HHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHh
Confidence 3577776 3322233 346888999999999998765 4456667788877655566 46678999999999999
Q ss_pred Hhc
Q 011517 186 LLE 188 (484)
Q Consensus 186 L~~ 188 (484)
+..
T Consensus 97 ~t~ 99 (182)
T 1u11_A 97 WTR 99 (182)
T ss_dssp HCS
T ss_pred ccC
Confidence 864
No 72
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=61.28 E-value=27 Score=31.24 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=45.6
Q ss_pred hhhcCCCcEEEEEEcCCC-------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCceEE
Q 011517 103 IDSFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV 171 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~s-------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~IV 171 (484)
+.-..+|+.+.+|||-.. ..+.+...=.+.++.+|+..|++++++.--...+..+.++++.. ..+|.+|
T Consensus 37 Y~m~~~~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~dc~v 115 (179)
T 3p45_A 37 YKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFV 115 (179)
T ss_dssp CCCCSSBCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTBSCEE
T ss_pred CCCCCCccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHhhhhcCCCCEEE
Confidence 333456777777776532 22333333446899999999999999887777777777777643 2456433
No 73
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=61.23 E-value=66 Score=28.25 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=51.7
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~-IV~vGGDGtl~evingL 186 (484)
++.||. |...-.. ..++....|+..|+.|++.... .+....++++++...+.+. |+++|+.+-|--++-++
T Consensus 7 ~V~Iim----gS~SD~~-v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 81 (166)
T 3oow_A 7 QVGVIM----GSKSDWS-TMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPGMVAAK 81 (166)
T ss_dssp EEEEEE----SSGGGHH-HHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHHT
T ss_pred eEEEEE----CcHHhHH-HHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHHHHHhc
Confidence 566665 3222233 3468889999999999987653 3456677888876555664 56679999999999988
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 82 t~ 83 (166)
T 3oow_A 82 TT 83 (166)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 74
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=61.10 E-value=2.7 Score=45.65 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=40.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+++.||+.+.-|-.... + ..+...|+++|++++++-.+....+-....+.+...||+||+.||-
T Consensus 530 ~kVaIL~a~~dGfe~~E--~-~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~ 593 (688)
T 2iuf_A 530 LKVGLLASVNKPASIAQ--G-AKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGA 593 (688)
T ss_dssp CEEEEECCTTCHHHHHH--H-HHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTC
T ss_pred CEEEEEecCCCCCcHHH--H-HHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCC
Confidence 68888886433322211 2 4788899999999998876543211111122233579999999993
No 75
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=60.51 E-value=28 Score=32.45 Aligned_cols=88 Identities=17% Similarity=0.107 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHH---HHHHhhcCCCceEEEEcCCChHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKE---IVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~---l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
++.+++.|++ |.....--.. +.+-++..+++.|+++.+..+... ....+ ..+.+...++|+||+++.+.. .+.
T Consensus 6 ~~~~~Ig~i~-~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 6 QQLGIIGLFV-PTFFGSYYGT-ILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp --CCEEEEEC-SCSCSHHHHH-HHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCCeEEEEe-CCCCCchHHH-HHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 3455666665 4332221122 234667778888988877666432 23334 566666678999999998876 456
Q ss_pred HHHHhcCcCcccccCCcEEEec
Q 011517 183 VNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP 204 (484)
+..+... ++|+-.+-
T Consensus 83 ~~~l~~~-------~iPvV~~~ 97 (290)
T 2rgy_A 83 LDELHRM-------HPKMVFLN 97 (290)
T ss_dssp HHHHHHH-------CSSEEEES
T ss_pred HHHHhhc-------CCCEEEEc
Confidence 6655432 57776663
No 76
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=60.16 E-value=56 Score=31.17 Aligned_cols=87 Identities=8% Similarity=0.187 Sum_probs=54.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++...+..-- ..++ +-++..+++.|+.+.+..+.. .....++.+.+...++|+||+++.+..- +.+..
T Consensus 60 ~~~~~Igvi~~~~~~~~~-~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~ 136 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVF-LETL-TGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE-PFERI 136 (339)
T ss_dssp ---CEEEEEESCSTTCTT-HHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT-THHHH
T ss_pred CCCCEEEEEeCCCCCHHH-HHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHH
Confidence 345667777754433222 2233 577888888999888877654 3334456677766789999999876543 44444
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
+... .+|+-++
T Consensus 137 l~~~-------~iPvV~~ 147 (339)
T 3h5o_A 137 LSQH-------ALPVVYM 147 (339)
T ss_dssp HHHT-------TCCEEEE
T ss_pred HhcC-------CCCEEEE
Confidence 4433 5777766
No 77
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=60.12 E-value=58 Score=30.97 Aligned_cols=90 Identities=14% Similarity=0.133 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcC--CCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 107 GRPKRLYIFVNP--FGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP--~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
++.+.+.|++.. .+..- -..+ .+-++..+++.|+++.+..+... ....+..+.+...++|+||+++.+..-.++.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~-~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIY-FSEL-LFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp -CCSEEEEEECTTTTSTTH-HHHH-HHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCHHHHH
T ss_pred CCCCEEEEEecCCcccChh-HHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCChHHHH
Confidence 456677777754 23221 1222 35677888889998888776543 3334466666667899999999887754444
Q ss_pred HHHhcCcCcccccCCcEEEecC
Q 011517 184 NGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~ 205 (484)
.-+-.. .+|+-++=.
T Consensus 137 ~~~~~~-------~iPvV~~~~ 151 (338)
T 3dbi_A 137 DIIDAH-------SQPIMVLNR 151 (338)
T ss_dssp HHHHHC-------SSCEEEESS
T ss_pred HHHHcC-------CCCEEEEcC
Confidence 433322 567766633
No 78
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=60.06 E-value=57 Score=28.78 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=52.1
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evingL 186 (484)
++.||. |...-.. ..++....|+.-|++|++.+. +.+.+..+++++....+++ .|+++|+.+-|--++-++
T Consensus 8 ~V~Iim----gS~SD~~-v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~ 82 (169)
T 3trh_A 8 FVAILM----GSDSDLS-TMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAGTIAAH 82 (169)
T ss_dssp EEEEEE----SCGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHHHHHHT
T ss_pred cEEEEE----CcHHhHH-HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhc
Confidence 466665 3222233 346888999999999998765 3456677888877666666 466679999999999988
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 83 t~ 84 (169)
T 3trh_A 83 TL 84 (169)
T ss_dssp CS
T ss_pred CC
Confidence 64
No 79
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=59.94 E-value=30 Score=33.48 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhhhcCCC--cEEEEEEcCCC----CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 93 RLWCEKLRDFIDSFGRP--KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 93 ~~w~~~l~~~~~~~~~~--~r~lviiNP~s----G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
..|.++-.+.+....++ +|+.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++.
T Consensus 41 ~~~~~~~~e~Y~m~~~~~~~r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~ 117 (302)
T 3e4c_A 41 RIWKQKSAEIYPIMDKSSRTRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFA 117 (302)
T ss_dssp HHHHHHGGGBCCCCCTTTCCCEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred HHHHhccccccccCCCCCCccEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 34444444445433333 56666665442 1222222334689999999999999888777777777777764
No 80
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=59.84 E-value=59 Score=28.79 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=53.6
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCc-eEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYD-GIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d-~IV~vGGDGtl~evin 184 (484)
..++.||. |...-.. ..++....|+.-|++|++.+. +.+.+..+++++....+++ .|+++|+.+-|--++-
T Consensus 12 ~~~V~Iim----GS~SD~~-v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA 86 (174)
T 3kuu_A 12 GVKIAIVM----GSKSDWA-TMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLA 86 (174)
T ss_dssp CCCEEEEE----SSGGGHH-HHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHH
T ss_pred CCcEEEEE----CcHHHHH-HHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHH
Confidence 34577775 3322233 346888899999999998765 3455667888877666666 4666799999999999
Q ss_pred HHhc
Q 011517 185 GLLE 188 (484)
Q Consensus 185 gL~~ 188 (484)
++..
T Consensus 87 ~~t~ 90 (174)
T 3kuu_A 87 AKTL 90 (174)
T ss_dssp HTCS
T ss_pred hccC
Confidence 9864
No 81
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=59.84 E-value=20 Score=33.50 Aligned_cols=87 Identities=8% Similarity=0.047 Sum_probs=54.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEV 182 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~ev 182 (484)
++++++.|++.-.+..-- .. +.+-++..+++.|+++.+..+.. .....+.++.+...++|+||+.+.|.. +.+.
T Consensus 3 ~~~~~Igvi~~~~~~~~~-~~-~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~ 80 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYW-LS-VNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHN 80 (304)
T ss_dssp --CCEEEEEESCSCSHHH-HH-HHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTT
T ss_pred CCCcEEEEEeCCCCCcHH-HH-HHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHH
Confidence 456778888764432211 22 23467777888899998888774 334445566665568999999988754 2344
Q ss_pred HHHHhcCcCcccccCCcEEEe
Q 011517 183 VNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiI 203 (484)
++.+. . .+|+-.+
T Consensus 81 ~~~~~-~-------~iPvV~~ 93 (304)
T 3o1i_D 81 LKSWV-G-------NTPVFAT 93 (304)
T ss_dssp HHHHT-T-------TSCEEEC
T ss_pred HHHHc-C-------CCCEEEe
Confidence 55554 3 5777666
No 82
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=59.77 E-value=54 Score=31.54 Aligned_cols=87 Identities=10% Similarity=0.150 Sum_probs=54.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++...+.. --..+ .+-++..+++.|+.+.+..+.. .....++.+.+...++|+||+++.+.+- +.+..
T Consensus 68 ~~~~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~~~~~ 144 (355)
T 3e3m_A 68 KRSGFVGLLLPSLNNL-HFAQT-AQSLTDVLEQGGLQLLLGYTAYSPEREEQLVETMLRRRPEAMVLSYDGHTE-QTIRL 144 (355)
T ss_dssp ---CEEEEEESCSBCH-HHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEECSCCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCch-HHHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCH-HHHHH
Confidence 3455677776433222 12223 3577888888999988877654 3334456666666789999999988763 55555
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
|... .+|+-.+
T Consensus 145 l~~~-------~iPvV~i 155 (355)
T 3e3m_A 145 LQRA-------SIPIVEI 155 (355)
T ss_dssp HHHC-------CSCEEEE
T ss_pred HHhC-------CCCEEEE
Confidence 5543 6788776
No 83
>2hig_A 6-phospho-1-fructokinase; transferase; 2.40A {Trypanosoma brucei} PDB: 3f5m_A*
Probab=58.72 E-value=8.7 Score=39.95 Aligned_cols=98 Identities=16% Similarity=0.180 Sum_probs=55.3
Q ss_pred EEEEEEcCCCCCcc-----hhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 111 RLYIFVNPFGGKKI-----ASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 111 r~lviiNP~sG~~~-----a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
+++-|.|=..|=-+ -..+=.+.+..++..-|- +.-|.+ .....++++.+...+.|.+|++|||||+.-+.
T Consensus 131 ~V~Gi~~G~~GLl~~~~~~~~~L~~~~V~~i~~~GGT---iLGTsR~~~~~~~i~~~l~~~~Id~LvvIGGdgS~~~A~- 206 (487)
T 2hig_A 131 RVIGFRFGYWGLSKKGSQTAIELHRGRVTNIHHYGGT---ILGSSRGPQDPKEMVDTLERLGVNILFTVGGDGTQRGAL- 206 (487)
T ss_dssp EEEECSTGGGGGSHHHHTTCEEECHHHHTTGGGSSSC---SSCCCCSCCCHHHHHHHHHHHTCSEEEEEECHHHHHHHH-
T ss_pred EEEEEccCHHHhhhccCCCEEECCHHHHHHHHhCCCC---eeccCCCCCCHHHHHHHHHHcCCCEEEEeCCCchHHHHH-
Confidence 67888777766521 111111245555544441 111111 11223556666656789999999999987432
Q ss_pred HHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.|.+.- .+...++++--||.==-||+..
T Consensus 207 ~L~e~~-~~~g~~i~vVGIPkTIDNDl~g 234 (487)
T 2hig_A 207 VISQEA-KRRGVDISVFGVPKTIDNDLSF 234 (487)
T ss_dssp HHHHHH-HHHTCCCEEEEEECCTTSSCCC
T ss_pred HHHHHH-HHhCCCceEEeccccccCCCCC
Confidence 232110 0112368999999999999974
No 84
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=58.49 E-value=11 Score=42.45 Aligned_cols=60 Identities=15% Similarity=0.278 Sum_probs=41.8
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
+..++++.+...+.|++|++|||||+.- ++.|.+....-....+|+--||.==-||+...
T Consensus 676 ~~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~y~~~~I~vVGIPkTIDNDl~gT 735 (989)
T 3opy_A 676 DMGTVAYYFQQYKFDGLIIIGGFEAFTA-LYELDAARAQYPIFNIPMCCLPATVSNNVPGT 735 (989)
T ss_dssp GHHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHHHTTTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred hHHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHhhCCCcCCcEEeccccccCCCCCC
Confidence 4556666666668999999999999854 44554421111123689999999999999753
No 85
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=58.46 E-value=42 Score=29.38 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=44.5
Q ss_pred hhhcCCCcEEEEEEcCC--------------CCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---C
Q 011517 103 IDSFGRPKRLYIFVNPF--------------GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~--------------sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~ 165 (484)
+.-..+|+.+.+|||-. =..+.+...=.+.++.+|+.-|+++++..--...+..+.++++.. .
T Consensus 16 Y~m~~~~rG~~LIinn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~dh~ 95 (164)
T 1qtn_A 16 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 95 (164)
T ss_dssp CCCCCSSCCEEEEEECCCCHHHHHHCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred ccCCCCCceEEEEEechhcCCccccccccccCcCCCCcHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhhcc
Confidence 33335567788887742 112233333446899999999999999887777777777776642 3
Q ss_pred CCceE
Q 011517 166 KYDGI 170 (484)
Q Consensus 166 ~~d~I 170 (484)
.+|.+
T Consensus 96 ~~dc~ 100 (164)
T 1qtn_A 96 NMDCF 100 (164)
T ss_dssp TCSCE
T ss_pred CCCEE
Confidence 46643
No 86
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=58.41 E-value=45 Score=31.43 Aligned_cols=88 Identities=13% Similarity=0.070 Sum_probs=55.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL 186 (484)
.+++.|++...+..- -.. +.+-++..+++.|+++.+..+.... ...+.++.+...++|+||+.+-|.. ..+.+..+
T Consensus 3 ~~~Igvi~~~~~~~~-~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 3 KGSVGIAMPTKSSAR-WID-DGNNIVKQLQEAGYKTDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CCEEEEEECCSSSTH-HHH-HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred CcEEEEEeCCCcchH-HHH-HHHHHHHHHHHcCCEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 356666665443322 222 3356788888899988887765432 2234555655568999999998864 45667766
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... .+|+-.+-.
T Consensus 81 ~~~-------giPvV~~~~ 92 (330)
T 3uug_A 81 GEQ-------GIKVIAYDR 92 (330)
T ss_dssp HHT-------TCEEEEESS
T ss_pred HHC-------CCCEEEECC
Confidence 554 678776644
No 87
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=58.07 E-value=79 Score=27.95 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=57.7
Q ss_pred cEEEEEEcCCC----CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc----CCCceEE-EE-------
Q 011517 110 KRLYIFVNPFG----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDGIV-CV------- 173 (484)
Q Consensus 110 ~r~lviiNP~s----G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~----~~~d~IV-~v------- 173 (484)
+++.+|||-.. ....+...=.+.++..|+..|+++.+..--...+..+.++++.. ..+|.+| ++
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~f~~~~d~~~~d~~v~~~lsHG~~g 122 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVDVKKNLTASDMTTELEAFAHRPEHKTSDSTFLVFMSHGIRE 122 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTCGGGGGCSCEEEEEESCBCSS
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEecCCCCC
Confidence 56666655442 22233333446899999999999998877777777777777532 3556333 22
Q ss_pred ---cCCC--------hHHHHHHHHhcCcCcccccCCcEEEecCCCchh
Q 011517 174 ---SGDG--------ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNG 210 (484)
Q Consensus 174 ---GGDG--------tl~evingL~~~~~~~~~~~~pigiIP~GSgN~ 210 (484)
|=|| -+.++++-+-...-..-+.++-|-+|-+=-||.
T Consensus 123 ~i~g~D~~~~~~~~v~l~~I~~~f~~~~CpsL~gKPKlffiqACRg~~ 170 (178)
T 2h54_A 123 GICGKKHSEQVPDILQLNAIFNMLNTKNCPSLKDKPKVIIIQACRGDS 170 (178)
T ss_dssp CEECTTCCSSSCCEECHHHHHHHHSTTTCGGGTTSCEEEEEESCSSSB
T ss_pred eEEeecCCcccCcEEEHHHHHHHHhhcCChhhcCCceEEEEECCCCCC
Confidence 3355 245555544332111112255677777655554
No 88
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=57.64 E-value=67 Score=28.59 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=51.7
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCce-EEEEcCCChHHHHHHHHh
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDG-IVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~-IV~vGGDGtl~evingL~ 187 (484)
+.||. |...-..+. ++....|++-|++|++.+. +.+....++++++...+++. |.++||.+-|--++-++-
T Consensus 25 V~Iim----GS~SD~~v~-~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpGvvAa~T 99 (181)
T 4b4k_A 25 VGVIM----GSTSDWETM-KYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPGMVAAKT 99 (181)
T ss_dssp EEEEE----SSGGGHHHH-HHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHHHHHTTC
T ss_pred EEEEE----CCHhHHHHH-HHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchhhHHhcC
Confidence 56666 333334444 6888999999999988655 34556678888877667774 567899999999988764
Q ss_pred c
Q 011517 188 E 188 (484)
Q Consensus 188 ~ 188 (484)
.
T Consensus 100 ~ 100 (181)
T 4b4k_A 100 N 100 (181)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=57.39 E-value=65 Score=29.55 Aligned_cols=89 Identities=9% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.+++ |.....-... +.+-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.+.+ .+++..
T Consensus 5 ~~~~~Ig~i~-~~~~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~ 81 (289)
T 1dbq_A 5 NHTKSIGLLA-TSSEAAYFAE-IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 81 (289)
T ss_dssp ---CEEEEEE-SCTTSHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHH
T ss_pred CCCCEEEEEe-CCCCChHHHH-HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHH
Confidence 3455676666 3322211122 23466777788898887766543 233345566666678999999998864 234444
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
|.+. .++|+-.+-
T Consensus 82 l~~~------~~iPvV~~~ 94 (289)
T 1dbq_A 82 LEEY------RHIPMVVMD 94 (289)
T ss_dssp HHHT------TTSCEEEEE
T ss_pred HHhc------cCCCEEEEc
Confidence 4321 156766653
No 90
>4eys_A MCCC family protein; MCCF like, serine peptidase, csgid, structural genomics, NIA national institute of allergy and infectious diseases; HET: AMP; 1.58A {Streptococcus pneumoniae} PDB: 4e94_A*
Probab=57.12 E-value=17 Score=36.02 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=45.9
Q ss_pred EEEEcCCCCCcc---hhhchHHhHHHHHHhcCCeEEEEecCCh----------hHHHHHHHHhhcCCCceEEEE-cCCCh
Q 011517 113 YIFVNPFGGKKI---ASKIFLDDVKPLLEDANIQFTVQETTQQ----------LHAKEIVKVLDLSKYDGIVCV-SGDGI 178 (484)
Q Consensus 113 lviiNP~sG~~~---a~~~~~~~v~p~l~~ag~~~~v~~T~~~----------~~a~~l~~~~~~~~~d~IV~v-GGDGt 178 (484)
.-|+.|.|+-.. ....+ +.....|+..|+++.+-.+-.. ..|.++.+.+.....|+|+|+ ||+|+
T Consensus 8 I~ivaPSs~~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 86 (346)
T 4eys_A 8 IGIVSLSSGIIGEDFVKHEV-DLGIQRLKDLGLNPIFLPHSLKGLDFIKDHPEARAEDLIHAFSDDSIDMILCAIGGDDT 86 (346)
T ss_dssp EEEECSSCCGGGSGGGHHHH-HHHHHHHHHTTCEEEECTTTTSCHHHHHHCHHHHHHHHHHHHHCTTCCEEEECCCCSCG
T ss_pred EEEEeCCCcccccccCHHHH-HHHHHHHHhCCCEEEECCchhccCCccCCCHHHHHHHHHHHhhCCCCCEEEEcccccCH
Confidence 457789888532 12234 4667789999988877544332 234455555555678888876 99997
Q ss_pred HHHHHHHH
Q 011517 179 LVEVVNGL 186 (484)
Q Consensus 179 l~evingL 186 (484)
. +++..|
T Consensus 87 ~-rlLp~L 93 (346)
T 4eys_A 87 Y-RLLPYL 93 (346)
T ss_dssp G-GGHHHH
T ss_pred H-HHHHHh
Confidence 4 455555
No 91
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=57.06 E-value=14 Score=36.11 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
++++.+...+.|.++++|||||+.-+ +.|.+. .+|+--||.==-||+..
T Consensus 84 ~~~~~l~~~~Id~L~~IGGdgS~~~a-~~l~~~-------~i~vigiPkTIDNDl~~ 132 (319)
T 4a3s_A 84 KGIANLKKLGIEGLVVIGGDGSYMGA-KKLTEH-------GFPCVGVPGTIDNDIPG 132 (319)
T ss_dssp HHHHHHHHHTCCEEEEEECTTHHHHH-HHHHHT-------TCCEEEEEEETTCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCcHHHHHH-HHHhcc-------CCcEEEeeccccCCCCC
Confidence 34455555578999999999998754 445443 68899999988899875
No 92
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=55.80 E-value=30 Score=32.15 Aligned_cols=89 Identities=12% Similarity=0.065 Sum_probs=44.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE-ecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
++.+++.+++. .....--.. +.+-++..+++.|+++.+. .+.. .....+..+.+...++|+||+.+.+.+ .+.+.
T Consensus 6 ~~~~~Ig~i~~-~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~ 82 (290)
T 3clk_A 6 KSSNVIAAVVS-SVRTNFAQQ-ILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQ 82 (290)
T ss_dssp --CCEEEEECC-CCSSSHHHH-HHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC-----CHH
T ss_pred ccCCEEEEEeC-CCCChHHHH-HHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHH
Confidence 44566666663 322222222 2346677788889887776 4432 222334566666678999999988764 24455
Q ss_pred HHhcCcCcccccCCcEEEecC
Q 011517 185 GLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~ 205 (484)
.|... ++|+-.+-.
T Consensus 83 ~l~~~-------~iPvV~~~~ 96 (290)
T 3clk_A 83 LLQSS-------DVPYCFLSM 96 (290)
T ss_dssp HHHCC---------CEEEESC
T ss_pred HHHhC-------CCCEEEEcC
Confidence 55332 577766643
No 93
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=55.53 E-value=41 Score=30.83 Aligned_cols=87 Identities=9% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHH-
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN- 184 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin- 184 (484)
++.+++.|++.-.+.. --..+ .+-++..+++.|+.+.+..+... ....++.+.+...++|+||+.+.+ .+.+.
T Consensus 6 ~~~~~Ig~i~~~~~~~-~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~ 80 (277)
T 3e61_A 6 RKSKLIGLLLPDMSNP-FFTLI-ARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAFN---ENIIEN 80 (277)
T ss_dssp ----CEEEEESCTTSH-HHHHH-HHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHH
T ss_pred CCCCEEEEEECCCCCH-HHHHH-HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHH
Confidence 3455677766433222 22223 35677888889999888776553 333456666666789999998843 45565
Q ss_pred HHhcCcCcccccCCcEEEecC
Q 011517 185 GLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~ 205 (484)
.|... .+|+-.+-.
T Consensus 81 ~l~~~-------~iPvV~~~~ 94 (277)
T 3e61_A 81 TLTDH-------HIPFVFIDR 94 (277)
T ss_dssp HHHHC--------CCEEEGGG
T ss_pred HHHcC-------CCCEEEEec
Confidence 55543 577766644
No 94
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=55.22 E-value=34 Score=31.56 Aligned_cols=88 Identities=11% Similarity=0.089 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCC--CcchhhchHHhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCceEEEEcCCChH-HH
Q 011517 108 RPKRLYIFVNPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGIL-VE 181 (484)
Q Consensus 108 ~~~r~lviiNP~sG--~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGtl-~e 181 (484)
+.+++.|++ |..+ ..--.. +.+-++..+++.|+++.+..+. ......+..+.+...++|+||+.+.|..- .+
T Consensus 4 ~~~~Ig~v~-~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~ 81 (289)
T 3brs_A 4 KQYYMICIP-KVLDDSSDFWSV-LVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADYEKTYD 81 (289)
T ss_dssp -CCEEEEEC-SCCCSSSHHHHH-HHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHH
T ss_pred CCcEEEEEe-CCCCCCchHHHH-HHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHH
Confidence 455666665 4332 211122 2346677788889888776552 33334456666666789999999887642 24
Q ss_pred HHHHHhcCcCcccccCCcEEEec
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP 204 (484)
.+..+.+ .++|+-.+-
T Consensus 82 ~~~~~~~-------~~iPvV~~~ 97 (289)
T 3brs_A 82 AAKEIKD-------AGIKLIVID 97 (289)
T ss_dssp HHTTTGG-------GTCEEEEES
T ss_pred HHHHHHH-------CCCcEEEEC
Confidence 4444332 257776653
No 95
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=55.11 E-value=49 Score=30.92 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=24.8
Q ss_pred cCCCceEEEEcCCChHH-----HHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 164 LSKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl~-----evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
...||+|++.||-|+.. +-+..++.+.. ...-+|+.|=.|.
T Consensus 103 ~~~yD~l~ipGG~g~~~~l~~~~~l~~~l~~~~---~~gk~iaaIC~Gp 148 (247)
T 3n7t_A 103 PHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIY---KRGGVIGAVCHGP 148 (247)
T ss_dssp GGGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETTGG
T ss_pred hhhCCEEEEeCCCchhhhcccCHHHHHHHHHHH---HcCCEEEEEChHH
Confidence 35799999999999842 22222222211 1256888887775
No 96
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=55.08 E-value=69 Score=30.34 Aligned_cols=88 Identities=13% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh-HHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.+++.-.+.. --..+ .+-++..+++.|+++.+..+.... ...++.+.+...++|+||+++.+..- +.+..
T Consensus 58 ~~~~~Ig~i~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 134 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNI-FYAEL-ARGIEDIATMYKYNIILSNSDQNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEE 134 (332)
T ss_dssp C-CCEEEEEEC--CCS-HHHHH-HHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHH
T ss_pred CCCCEEEEEeCCCCCc-HHHHH-HHHHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHH
Confidence 4456677776432222 12222 356777788889988877665432 23455666666789999999887653 55655
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+... ++|+-.+-
T Consensus 135 l~~~-------~iPvV~~~ 146 (332)
T 2hsg_A 135 LKKS-------PVPVVLAA 146 (332)
T ss_dssp HTTS-------SSCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 5432 57876663
No 97
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=54.93 E-value=45 Score=28.54 Aligned_cols=57 Identities=7% Similarity=0.113 Sum_probs=40.2
Q ss_pred CCCcEEEEEEcCCC-------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 107 GRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 107 ~~~~r~lviiNP~s-------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
.+|+.+.+|||-.. ..+.+...=.+.++..|+.-|+++++..--...+..+.++++.
T Consensus 13 ~~~rG~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~ 76 (146)
T 2dko_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVS 76 (146)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCceEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHH
Confidence 45777888887631 1223333344689999999999999988777777777777664
No 98
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=54.83 E-value=16 Score=40.94 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=41.1
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 155 a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
..++++.+...+.|++|++|||||+.- ++.|.+....-....+|+--||.==-||+...
T Consensus 651 ~~~i~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vVGIPkTIDNDl~gT 709 (941)
T 3opy_B 651 IGMIAYFFEKYGFDGLILVGGFEAFIS-LHQLERARINYPSLRIPLVLIPATISNNVPGT 709 (941)
T ss_dssp HHHHHHHHHHTTCSEEEEEESHHHHHH-HHHHHHGGGTCGGGCSCEEEEEBCSSCCCTTC
T ss_pred HHHHHHHHHHcCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeeccccCCCCCC
Confidence 445667777778999999999999864 34443321101123689999999999999753
No 99
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=54.31 E-value=9.1 Score=41.47 Aligned_cols=85 Identities=15% Similarity=0.196 Sum_probs=52.2
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH-HHHHHHhhcCCCceEEEEcCC-C----------
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA-KEIVKVLDLSKYDGIVCVSGD-G---------- 177 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a-~~l~~~~~~~~~d~IV~vGGD-G---------- 177 (484)
|++.||+.. |...... + ..+...|+++|+.++++-.+.. +. .....+.+...||+||+.||- |
T Consensus 538 rKVaILvad--G~fE~~E-l-~~p~~aL~~aGa~V~vVsp~~g-~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~ 612 (688)
T 3ej6_A 538 LRVGVLSTT--KGGSLDK-A-KALKEQLEKDGLKVTVIAEYLA-SGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSP 612 (688)
T ss_dssp CEEEEECCS--SSSHHHH-H-HHHHHHHHHTTCEEEEEESSCC-TTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCT
T ss_pred CEEEEEccC--CCccHHH-H-HHHHHHHHHCCCEEEEEeCCCC-CCcccCcccCChhcCcEEEECCCcccccccccchhh
Confidence 689898864 2112222 2 3678889999999999866543 21 111122223469999999993 3
Q ss_pred -----hHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 178 -----ILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 178 -----tl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
-+-+++...+.. .-|||.|-.|
T Consensus 613 Lr~~~~a~~fV~e~~~h-------gKpIAAIchg 639 (688)
T 3ej6_A 613 LFPAGRPSQILTDGYRW-------GKPVAAVGSA 639 (688)
T ss_dssp TSCTTHHHHHHHHHHHT-------TCCEEEEGGG
T ss_pred hccCHHHHHHHHHHHHc-------CCEEEEeCcc
Confidence 234555555544 4688888665
No 100
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=53.58 E-value=42 Score=31.08 Aligned_cols=89 Identities=13% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCCcEEEEEEcCCCCC-cchhhchHHhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGK-KIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~-~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
++.+.+.|++...... .--.. +.+-++..+++.|+.+.+..+..... ..++.+.+...++|+||+++.+.. .+.++
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~ 83 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQ-MVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-DPRVR 83 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHH-HHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHHHH
T ss_pred CCCCEEEEEecCCccccHHHHH-HHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-cHHHH
Confidence 4567787777644321 11122 23467777888888887776654332 234444454578999999987644 25566
Q ss_pred HHhcCcCcccccCCcEEEec
Q 011517 185 GLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP 204 (484)
.+.+. .+|+-++-
T Consensus 84 ~l~~~-------~iPvV~i~ 96 (288)
T 3gv0_A 84 FMTER-------NMPFVTHG 96 (288)
T ss_dssp HHHHT-------TCCEEEES
T ss_pred HHhhC-------CCCEEEEC
Confidence 55543 57776653
No 101
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=53.56 E-value=50 Score=31.31 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=55.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+.-+++.|++||...... ...+.++..++..|+++.........+..+.++.+. .+.|.|+ +..|+++...+..+
T Consensus 138 P~~k~vgvi~~~~~~~s~---~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~-~~~d~i~-~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 138 PNVKSIGVVYNPGEANAV---SLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA-EKSDVIY-ALIDNTVASAIEGM 212 (302)
T ss_dssp TTCCEEEEEECTTCHHHH---HHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH-TTCSEEE-ECSCHHHHHTHHHH
T ss_pred CCCCEEEEEeCCCcccHH---HHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc-CCeeEEE-EeCCcchhhHHHHH
Confidence 567899999998644322 233578888889999887777777777777777765 5677765 56799887666665
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 213 ~~ 214 (302)
T 3lkv_A 213 IV 214 (302)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 102
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=53.55 E-value=59 Score=30.87 Aligned_cols=88 Identities=11% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.+++.-.+ ..--..+ .+-++..+++.|+.+.+..+... ....++.+.+...++|+||+++.+.. .+.+..
T Consensus 61 ~~~~~Ig~i~~~~~-~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 137 (332)
T 2o20_A 61 KRTTTVGVILPTIT-STYFAAI-TRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTS 137 (332)
T ss_dssp -CCCEEEEEESCTT-CHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCCC-CcHHHHH-HHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHH
Confidence 45567777774322 2111222 34667778888998877766542 23345566666678999999987654 345555
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
|... ++|+-.+-
T Consensus 138 l~~~-------~iPvV~~~ 149 (332)
T 2o20_A 138 LKNS-------RTPVVLVG 149 (332)
T ss_dssp HHHH-------CCCEEEES
T ss_pred HHhC-------CCCEEEEc
Confidence 5332 57776663
No 103
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=53.54 E-value=47 Score=32.00 Aligned_cols=87 Identities=14% Similarity=0.307 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+.+.+.|++.-. ...--.. +.+-++..+++.|+++.+..+... ....++.+.+...++|+||+++.+.. .+.+..|
T Consensus 65 ~s~~Igvi~~~~-~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 65 RSNTIGVIVPSL-INHYFAA-MVTEIQSTASKAGLATIITNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp ---CEEEEESCS-SSHHHHH-HHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCCEEEEEeCCC-CCcHHHH-HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 445677776332 2211122 234667778888998888766542 23345666666678999999988765 4566655
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
... .+|+-.+-
T Consensus 142 ~~~-------~iPvV~i~ 152 (348)
T 3bil_A 142 QKQ-------GMPVVLVD 152 (348)
T ss_dssp HHC--------CCEEEES
T ss_pred HhC-------CCCEEEEc
Confidence 443 57776663
No 104
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=53.45 E-value=17 Score=33.64 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
.|++||.|+..-. + ..+.+.|.+.|++++++.....+. +-. +..++|+||+-||-++
T Consensus 1 m~i~vi~h~~~e~------~-g~~~~~l~~~g~~~~~~~~~~~~~---~p~--~~~~~d~lii~GGp~~ 57 (236)
T 3l7n_A 1 MRIHFILHETFEA------P-GAYLAWAALRGHDVSMTKVYRYEK---LPK--DIDDFDMLILMGGPQS 57 (236)
T ss_dssp CEEEEEECCTTSC------C-HHHHHHHHHTTCEEEEEEGGGTCC---CCS--CGGGCSEEEECCCSSC
T ss_pred CeEEEEeCCCCCC------c-hHHHHHHHHCCCeEEEEeeeCCCC---CCC--CccccCEEEECCCCCC
Confidence 3678888775432 2 356678889999988876532211 101 2357999999999887
No 105
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=53.13 E-value=42 Score=31.30 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=46.5
Q ss_pred HhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEec
Q 011517 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiIP 204 (484)
+-++..+++.|+++.+..+. ......+..+.+...++|+||+.+.|.. +.+.+..+... .+|+-.+=
T Consensus 23 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~-------giPvV~~~ 93 (297)
T 3rot_A 23 QGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKL-------NIPVIAVD 93 (297)
T ss_dssp HHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHH-------TCCEEEES
T ss_pred HHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHC-------CCCEEEEc
Confidence 56777788889988887765 4444556667766678999999888765 34556555443 57776653
No 106
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=53.05 E-value=10 Score=33.88 Aligned_cols=95 Identities=13% Similarity=0.178 Sum_probs=52.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh---------H--HHHHHHHhhcCCCceEEEEcC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL---------H--AKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~---------~--a~~l~~~~~~~~~d~IV~vGG 175 (484)
.+++++.|++-|..-. .. + ......|+.+|++++++-..... . +.....+.+...||.||+.||
T Consensus 21 ~~~~kV~ill~~g~~~---~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 21 GLSKKIAVLITDEFED---SE-F-TSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp TCCCEEEEECCTTBCT---HH-H-HHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred ccCCEEEEEECCCCCH---HH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 4567899888763221 11 1 24566788899888776543311 0 000011222347999999999
Q ss_pred CChH--------HHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 176 DGIL--------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 176 DGtl--------~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.|.- .+.+..... ...+|+-|=.|.. .+|.+
T Consensus 96 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aIC~G~~-lLa~a 134 (193)
T 1oi4_A 96 HSPDYLRGDNRFVTFTRDFVN-------SGKPVFAICHGPQ-LLISA 134 (193)
T ss_dssp THHHHHTTSHHHHHHHHHHHH-------TTCCEEEETTTHH-HHHHH
T ss_pred cCHHHhhhCHHHHHHHHHHHH-------cCCEEEEECHHHH-HHHHC
Confidence 7642 112222221 2568888887764 44443
No 107
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=52.55 E-value=39 Score=32.12 Aligned_cols=89 Identities=7% Similarity=-0.024 Sum_probs=53.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCC--CceEEEEcCCCh-HHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSK--YDGIVCVSGDGI-LVEV 182 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~--~d~IV~vGGDGt-l~ev 182 (484)
++.+++.|++.-.+.. --.. +.+-++..+++.|+++.+..+... ....+.++.+...+ +|+||+.+.|.. ..+.
T Consensus 3 ~~s~~Igvi~~~~~~~-~~~~-~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 3 LGQTTLACSFRSLTNP-YYTA-FNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CCCCEEEEEESCTTSH-HHHH-HHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHH
T ss_pred CCccEEEEEecCCCcH-HHHH-HHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHH
Confidence 3556777777433221 1122 234667778888998888766542 23334556655557 999999988764 3355
Q ss_pred HHHHhcCcCcccccCCcEEEec
Q 011517 183 VNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP 204 (484)
+..+... .+|+-.+-
T Consensus 81 ~~~~~~~-------~iPvV~~~ 95 (332)
T 2rjo_A 81 VEACSKA-------GAYVTTIW 95 (332)
T ss_dssp HHHHHHH-------TCEEEEES
T ss_pred HHHHHHC-------CCeEEEEC
Confidence 6555432 57776653
No 108
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=52.21 E-value=45 Score=28.58 Aligned_cols=61 Identities=8% Similarity=0.150 Sum_probs=39.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
.++++|++-... |...++ .+.+..-|...|++++++......+..++..++. ++|.||+..
T Consensus 4 ~~kv~IvY~S~~--GnT~~i-A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gs 64 (159)
T 3fni_A 4 ETSIGVFYVSEY--GYSDRL-AQAIINGITKTGVGVDVVDLGAAVDLQELRELVG--RCTGLVIGM 64 (159)
T ss_dssp CCEEEEEECTTS--TTHHHH-HHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--TEEEEEEEC
T ss_pred CCEEEEEEECCC--hHHHHH-HHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH--hCCEEEEEc
Confidence 357888874444 455554 4688888988999888776554324455555553 688887754
No 109
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=52.19 E-value=43 Score=31.35 Aligned_cols=87 Identities=13% Similarity=0.062 Sum_probs=52.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL 186 (484)
+.++.|++ |..+..-... +.+-++..+++.|+++.+..+.. .....+.++.+...++|+||+.+.+.. +.+.+..+
T Consensus 2 ~~~Ig~i~-~~~~~~~~~~-~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 2 PLTVGFSQ-VGSESGWRAA-ETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CCEEEEEE-CCCCSHHHHH-HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred CeEEEEEe-CCCCCHHHHH-HHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 34555554 4433222222 22456777888899888776643 233345566665568999999988764 35666666
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
... ++|+-.+-
T Consensus 80 ~~~-------~iPvV~~~ 90 (306)
T 2vk2_A 80 KDA-------EIPVFLLD 90 (306)
T ss_dssp HHT-------TCCEEEES
T ss_pred HHC-------CCCEEEec
Confidence 443 57776653
No 110
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=52.05 E-value=24 Score=27.63 Aligned_cols=35 Identities=17% Similarity=0.241 Sum_probs=26.7
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
|-.+++.+|++.|++|+.+..+....+.+.+.++.
T Consensus 16 ~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~ 50 (92)
T 2lqo_A 16 YCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVN 50 (92)
T ss_dssp SHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHc
Confidence 45688999999999998887766666666666653
No 111
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=51.89 E-value=23 Score=34.54 Aligned_cols=65 Identities=12% Similarity=0.320 Sum_probs=43.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec----------CChhHHHHHHHHhhcCCCceEEEE-cCCCh
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET----------TQQLHAKEIVKVLDLSKYDGIVCV-SGDGI 178 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T----------~~~~~a~~l~~~~~~~~~d~IV~v-GGDGt 178 (484)
.-.-||.|.|+-. ...+ +.....|+..|+++.+-.+ ..+..|.++.+.+.....|+|+|+ ||+|+
T Consensus 18 d~I~ivaPSs~~~--~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyga 93 (311)
T 1zl0_A 18 GRVALIAPASAIA--TDVL-EATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYGC 93 (311)
T ss_dssp SEEEEECCSBCCC--HHHH-HHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSCG
T ss_pred CEEEEEeCCCCCC--HHHH-HHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcCH
Confidence 3467889998864 2334 5778889999988776322 222335566666665677877764 89996
No 112
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=51.76 E-value=1e+02 Score=26.80 Aligned_cols=60 Identities=13% Similarity=0.231 Sum_probs=45.5
Q ss_pred HHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcC-CCce-EEEEcCCChHHHHHHHHhcC
Q 011517 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLS-KYDG-IVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~-~~d~-IV~vGGDGtl~evingL~~~ 189 (484)
.++....|+..|++|++... +.+.+..++++++... +.+. |+++|+.+-|--++-++...
T Consensus 18 ~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~LpgvvA~~t~~ 82 (159)
T 3rg8_A 18 AEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSGFVDGFVKG 82 (159)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHHHHHhccCC
Confidence 46888999999999998765 3455667788777643 4664 56678999999999998653
No 113
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=51.02 E-value=77 Score=29.12 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=55.1
Q ss_pred HHHHHHhcCCeEEEEecCChhHHHHHHHH------------hhcCCCceEEEEcCCChHHHHHHHHhcCcCccc------
Q 011517 133 VKPLLEDANIQFTVQETTQQLHAKEIVKV------------LDLSKYDGIVCVSGDGILVEVVNGLLEREDWND------ 194 (484)
Q Consensus 133 v~p~l~~ag~~~~v~~T~~~~~a~~l~~~------------~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~------ 194 (484)
....|..+|.++.++..+-.....+++++ -++.++|.||++-||-.+|+.+-.+.++.-+-+
T Consensus 46 ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~ 125 (223)
T 3dfz_A 46 RIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSFS 125 (223)
T ss_dssp HHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-----
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 33445556777877766554455555543 234678999999999999999988865321100
Q ss_pred -----------ccCCcEEEecCCCchhhhhhc
Q 011517 195 -----------AIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 195 -----------~~~~pigiIP~GSgN~~A~sl 215 (484)
.-.+.|||--.|.+=.+|+.+
T Consensus 126 ~~~f~~Paiv~rg~l~iaIST~G~sP~la~~i 157 (223)
T 3dfz_A 126 DGNIQIPAQFSRGRLSLAISTDGASPLLTKRI 157 (223)
T ss_dssp CCSEECCEEEEETTEEEEEECTTSCHHHHHHH
T ss_pred cCeEEEeeEEEeCCEEEEEECCCCCcHHHHHH
Confidence 014667887778888888766
No 114
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=50.72 E-value=15 Score=40.42 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 155 AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 155 a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
..++++.+...+.|++|++|||||+.- ++.|.+....-....+|+--||.==-||+..+
T Consensus 473 ~~~~~~~l~~~~Id~LvvIGGdgS~~~-a~~L~~~~~~~~~~~i~vvgiPkTIDNDl~gT 531 (766)
T 3o8o_B 473 LGMIAYYFQKYEFDGLIIVGGFEAFES-LHQLERARESYPAFRIPMVLIPATLSNNVPGT 531 (766)
T ss_dssp HHHHHHHHHHHTCSEEEEEESHHHHHH-HHHHHTTTTTCGGGCSCCCEEEBCTTCCCSSC
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHH-HHHHHHHHHhcCccCCcEEeeccccccCCCCC
Confidence 345666666668899999999999864 44554321111123689999999999999753
No 115
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=50.71 E-value=1.6e+02 Score=27.61 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=37.7
Q ss_pred HhHHHHHHhcCCeEEEE--ecC---ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTVQ--ETT---QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~--~T~---~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~ 188 (484)
+-++..+++.|+++.+. .+. ......+..+.+...++|+||+ .+|.. ..+.+..+..
T Consensus 64 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi-~~~~~~~~~~~~~~~~ 126 (342)
T 1jx6_A 64 ASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIF-TLDTTRHRKFVEHVLD 126 (342)
T ss_dssp HHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-CCSSSTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEE-eCChHhHHHHHHHHHH
Confidence 46777788889887776 354 3333445666666678999999 66654 3566666644
No 116
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=50.47 E-value=89 Score=27.26 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=38.2
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcC-CCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..+...|++.|+++.. +.........+.++++... ++|.||+.||=|. ..|++..++.
T Consensus 31 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 31 HYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFD 96 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCCCHHHHHHHHhc
Confidence 4688899999987543 4455555555655555433 5999999999774 3455554443
No 117
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=50.41 E-value=17 Score=39.98 Aligned_cols=59 Identities=14% Similarity=0.130 Sum_probs=38.8
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHH----------HHHhcC-----cCcccccCCcEEEecCCCchhhhhh
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evi----------ngL~~~-----~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.++++.+...+.|.+|++|||||+.-+. .-|.+. ........+++--||.==-||++..
T Consensus 99 ~~~~~~l~~~~Id~LvvIGGdgS~~gA~~l~~e~~~ll~eL~~~g~i~~~~~~~~~~i~vVGIPkTIDNDl~gT 172 (762)
T 3o8l_A 99 LRAAHNLVKRGITNLCVIGGDGSLTGADTFRSEWSDLLSDLQKAGKITAEEATRSSYLNIVGLVGSIDNDFCGT 172 (762)
T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHTTHHHHHHTTTTTSCTTTGGGSTTCCEEEEEEBCTTCCCSSC
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHhHHHHHHHHhccchhHHHHhcCCCCCeEEeecCcccCCCCC
Confidence 3455566656789999999999987543 222221 1111223688888998888999853
No 118
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=50.31 E-value=94 Score=30.05 Aligned_cols=77 Identities=10% Similarity=0.190 Sum_probs=50.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.+|..... -+.. ..+.++..|+++|+++..... ....+....++++...++|+|++++.|.....++..+
T Consensus 143 ~~~iaii~~~~~---~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~ 218 (392)
T 3lkb_A 143 GAKVALVVHPSP---FGRA-PVEDARKAARELGLQIVDVQEVGSGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDA 218 (392)
T ss_dssp TCEEEEEECSSH---HHHT-THHHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEEEeCCc---hhhh-HHHHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHH
Confidence 478988875422 1222 235677888899987654332 2222344555666556899999999888888888888
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 219 ~~~ 221 (392)
T 3lkb_A 219 KRL 221 (392)
T ss_dssp HHT
T ss_pred HHc
Confidence 665
No 119
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=50.10 E-value=28 Score=28.04 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=35.5
Q ss_pred CcEEEEEEc-----CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 109 PKRLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 109 ~~r~lviiN-----P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
..++.||.- |..+ |-.+++.+|+..|++|+.+.......+.+..++..-...=-.|.++|.
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp-------~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCG-------FSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGE 80 (111)
T ss_dssp SSSEEEEESBCSSSBSSH-------HHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred cCCEEEEEecCCCCCcch-------hHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCE
Confidence 456888875 3222 556889999999999887655433444443444321222234555664
No 120
>3o8l_A 6-phosphofructokinase, muscle type; transferase; HET: ATP ADP; 3.20A {Oryctolagus cuniculus} PDB: 3o8n_A*
Probab=50.02 E-value=17 Score=39.95 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=41.3
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
...++++.+...+.|++|++|||||+.-+. .|.+.........+|+--||.==-||+...
T Consensus 477 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a~-~L~~~~~~~~~~~i~vvgiPkTIDNDl~gT 536 (762)
T 3o8l_A 477 SFEQISANITKFNIQGLVIIGGFEAYTGGL-ELMEGRKQFDELCIPFVVIPATVSNNVPGS 536 (762)
T ss_dssp GHHHHHHHHHHTTCCCEEEEESHHHHHHHH-HHHHHHHHCSTTCSCEEEEEBCTTCCCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHH-HHHHHHHhccccCCCEEeeccccCCCCCCC
Confidence 445666777777899999999999987553 232210000113689999999999999853
No 121
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=49.99 E-value=50 Score=31.22 Aligned_cols=87 Identities=14% Similarity=0.092 Sum_probs=51.1
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~eving 185 (484)
.+++.|++ |..+..--.. ..+-++..+++.|+++.+.. ++ ......+.++.+...++|+||+.+-|.. +.+++..
T Consensus 3 ~~~Igvi~-~~~~~~~~~~-~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~ 80 (316)
T 1tjy_A 3 AERIAFIP-KLVGVGFFTS-GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKR 80 (316)
T ss_dssp CCEEEEEC-SSSSSHHHHH-HHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHH
T ss_pred CCEEEEEe-CCCCChHHHH-HHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 34555555 5443322222 22456667778888776642 32 2233344566665678999999998875 3566666
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+... .+|+-.+-
T Consensus 81 a~~~-------gipvV~~d 92 (316)
T 1tjy_A 81 AMQR-------GVKILTWD 92 (316)
T ss_dssp HHHT-------TCEEEEES
T ss_pred HHHC-------cCEEEEec
Confidence 5543 57776653
No 122
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=49.67 E-value=88 Score=29.11 Aligned_cols=88 Identities=10% Similarity=0.215 Sum_probs=54.4
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++...+..-- ..+ .+-++..+++.|+.+.+..+... ....++.+.+...++|+||+++.+..-.+.+..
T Consensus 13 ~~s~~Igvi~~~~~~~~~-~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVF-ADM-FSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp ----CEEEEESCTTSTTH-HHH-HHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCcChHH-HHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHH
Confidence 445667777754433222 223 35778888889999988777653 334566777777889999999988763225555
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+.+ .+|+-.+-
T Consensus 91 l~~--------~iPvV~i~ 101 (303)
T 3kke_A 91 VLE--------GVPAVTIN 101 (303)
T ss_dssp HHT--------TSCEEEES
T ss_pred HhC--------CCCEEEEC
Confidence 543 36766553
No 123
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=49.13 E-value=40 Score=31.24 Aligned_cols=65 Identities=15% Similarity=0.045 Sum_probs=42.2
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+..+.. .....++.+.+...++|+||+++.|.+ .+.+..+... ++|+-.+
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~~ 93 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQFLLKQ-------KFPFVAF 93 (287)
T ss_dssp HHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTT-CHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCC-cHHHHHHHhc-------CCCEEEE
Confidence 466777888898877655433 222345666666678999999987654 2555555443 5777665
No 124
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=48.86 E-value=64 Score=30.55 Aligned_cols=78 Identities=14% Similarity=0.025 Sum_probs=47.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|.. ... -+.... +..+..|+++|+++.. .......+....++++...+.|+|++++.|.....++..
T Consensus 134 g~~~ia~i~~-~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~ 209 (362)
T 3snr_A 134 NVKTVGYIGY-SDS--YGDLWF-NDLKKQGEAMGLKIVGEERFARPDTSVAGQALKLVAANPDAILVGASGTAAALPQTT 209 (362)
T ss_dssp TCCEEEEEEE-SSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHHHH-HHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 3578887743 222 222223 5677889999987532 222222233344455544578999998878777788888
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 210 ~~~~ 213 (362)
T 3snr_A 210 LRER 213 (362)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7665
No 125
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=48.44 E-value=67 Score=30.08 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=49.2
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec-C-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhc
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-T-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLE 188 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T-~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~ 188 (484)
+.++ .|..+. --.. +.+-++..+++.|+++.+..+ . ......+.++.+...++|+||+.+.|.. +.+.+..+..
T Consensus 4 Ig~i-~~~~~~-~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 4 IGVI-GKSVHP-YWSQ-VEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEE-CSCSSH-HHHH-HHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEE-eCCCcH-HHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 4444 455443 2222 334667778888988777643 2 2333345566666678999999888754 3456665544
Q ss_pred CcCcccccCCcEEEe
Q 011517 189 REDWNDAIKVPLGVV 203 (484)
Q Consensus 189 ~~~~~~~~~~pigiI 203 (484)
. ++|+-.+
T Consensus 81 ~-------~iPvV~~ 88 (313)
T 2h3h_A 81 M-------GIPVVTL 88 (313)
T ss_dssp T-------TCCEEEE
T ss_pred C-------CCeEEEe
Confidence 3 5777665
No 126
>2ql9_A Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_A* 2ql5_A* 2qlb_A* 2qlf_A 2qlj_A* 3edr_A 3ibc_A 3ibf_A 1i51_A
Probab=48.43 E-value=58 Score=28.82 Aligned_cols=58 Identities=9% Similarity=0.025 Sum_probs=40.6
Q ss_pred cCCCcEEEEEEcCCC-------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 106 FGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 106 ~~~~~r~lviiNP~s-------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
...|+.+.+|||-.- ..+.+...=.+.++.+|+..|++++++.--...+..+.++++.
T Consensus 40 ~~~~rG~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LgF~V~v~~dlt~~em~~~l~~~s 104 (173)
T 2ql9_A 40 NFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKAS 104 (173)
T ss_dssp CSSEEEEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHH
T ss_pred CCCCceEEEEEeccccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 355777888887541 1223333344689999999999999988777777777777764
No 127
>3hno_A Pyrophosphate-dependent phosphofructokinase; structural genomics, PSI-2, protein structure initiative; 2.00A {Nitrosospira multiformis atcc 25196} PDB: 3k2q_A
Probab=48.32 E-value=15 Score=37.51 Aligned_cols=60 Identities=8% Similarity=0.003 Sum_probs=40.8
Q ss_pred hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 152 QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 152 ~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
...-.++++.+...+.|.+|++|||||+.-+ +.|.+.. .+....+++--||.==-||++-
T Consensus 90 ~~~~~~~~~~l~~~~Id~Lv~IGGdgS~~~A-~~L~~~~-~~~g~~i~vIGiPkTIDNDl~~ 149 (419)
T 3hno_A 90 RREYERLIEVFKAHDIGYFFYNGGGDSADTC-LKVSQLS-GTLGYPIQAIHVPKTVDNDLPI 149 (419)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEESHHHHHHH-HHHHHHH-HHTTCCCEEEEEECCTTCCCSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCchHHHHH-HHHHHHH-HHhCCCccEEEecccccCCCcC
Confidence 3445566666766788999999999998643 3343210 0012358888999999999974
No 128
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=48.28 E-value=21 Score=39.25 Aligned_cols=60 Identities=17% Similarity=0.294 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
+..++++.+...+.|++|++|||||+.-+ +.|.+.........+|+--||.==-||+...
T Consensus 471 ~~~~~~~~l~~~~Id~LvvIGGdgS~~~a-~~L~~~~~~~~~~~i~vIgiPkTIDNDl~gT 530 (787)
T 3o8o_A 471 DLGTIAYYFQKNKLDGLIILGGFEGFRSL-KQLRDGRTQHPIFNIPMCLIPATVSNNVPGT 530 (787)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESHHHHHHH-HHHHHHTTTCGGGGSCEEEEEBCTTCCCTTC
T ss_pred hHHHHHHHHHHhCCCEEEEeCCchHHHHH-HHHHHHHHhcCccCCceeecccccccCCCCC
Confidence 34456666766789999999999998653 3444321101113689999999999999753
No 129
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=48.17 E-value=51 Score=30.40 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCChHH-----HHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~-----evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
+.||.|++.||-|... +-+..++.+.. ....+|+-|=.|+. .||..
T Consensus 97 ~~~D~livpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~vaaIC~G~~-~La~a 147 (243)
T 1rw7_A 97 DDYQIFFASAGHGTLFDYPKAKDLQDIASEIY---ANGGVVAAVCHGPA-IFDGL 147 (243)
T ss_dssp GGEEEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETTGGG-GGTTC
T ss_pred hhCcEEEECCCCCchhhcccCHHHHHHHHHHH---HcCCEEEEECCCHH-HHHhc
Confidence 4699999999998642 22222222211 12568888888876 56654
No 130
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=48.11 E-value=45 Score=31.81 Aligned_cols=111 Identities=10% Similarity=0.002 Sum_probs=66.4
Q ss_pred hcCCCcEEEEEEcCCC-------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCceEE-E-
Q 011517 105 SFGRPKRLYIFVNPFG-------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV-C- 172 (484)
Q Consensus 105 ~~~~~~r~lviiNP~s-------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~IV-~- 172 (484)
-..+|+++.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++.. .++|.+| +
T Consensus 16 m~~~~rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv~i 95 (278)
T 3od5_A 16 MDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVF 95 (278)
T ss_dssp CCSSBCCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCTTBSCEEEEE
T ss_pred CCCCCcCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEEEE
Confidence 3456778877776542 22233333346899999999999998887777777777766643 3456333 2
Q ss_pred ---------EcCCCh--HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 173 ---------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 173 ---------vGGDGt--l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
.|=||. +.++++-+-......-+-++-|-+|-+=-||.+...+
T Consensus 96 lSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~ 149 (278)
T 3od5_A 96 LSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPV 149 (278)
T ss_dssp ESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCEE
T ss_pred ECCCCCCEEEEeCCeEEHHHHHHHhccccChhhcCCCcEEEEecCCCCcccCCe
Confidence 344554 3344443332211112235678888887777776554
No 131
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=47.98 E-value=20 Score=32.31 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=33.9
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
..|+++.+.+...++ .||.-||. |....+..|.++.. ...+|++|.+-
T Consensus 20 ~~A~~lg~~La~~g~-~lV~GGg~~GiM~aa~~gA~~~g------G~~iGv~p~~l 68 (191)
T 1t35_A 20 RKAAELGVYMAEQGI-GLVYGGSRVGLMGTIADAIMENG------GTAIGVMPSGL 68 (191)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCCCSHHHHHHHHHHHTTT------CCEEEEEETTC
T ss_pred HHHHHHHHHHHHCCC-EEEECCCcccHHHHHHHHHHHcC------CeEEEEeCchh
Confidence 346677777765443 45555566 99988888887753 57999999873
No 132
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=47.95 E-value=1.7e+02 Score=27.01 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=45.4
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHHH-----HHhcCcCcccccCCcEEEe
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVVN-----GLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG-GDGtl~evin-----gL~~~~~~~~~~~~pigiI 203 (484)
.+.+...|+..|++++...... .-+..+.+.+...+.|.||+.. |-+.+.+.+- .++.. ..+|+-++
T Consensus 216 l~~~~~~l~~~~~~~~~~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~------~~~pvLvv 288 (294)
T 3loq_A 216 LRVMEEVIGAEGIEVHVHIESG-TPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRR------SPVPVFVC 288 (294)
T ss_dssp HHHHHHHHHHTTCCEEEEEECS-CHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHH------CSSCEEEE
T ss_pred HHHHHHHHHHcCCcEEEEEecC-CHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhc------CCCCEEEE
Confidence 3578888888998876655443 4556666666656778665543 5666666543 34433 26899999
Q ss_pred cCCC
Q 011517 204 PAGT 207 (484)
Q Consensus 204 P~GS 207 (484)
|.+.
T Consensus 289 ~~~~ 292 (294)
T 3loq_A 289 KRGD 292 (294)
T ss_dssp CSCT
T ss_pred CCCC
Confidence 8763
No 133
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=47.62 E-value=98 Score=27.60 Aligned_cols=65 Identities=5% Similarity=0.056 Sum_probs=46.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+++.++-.+.--.+ . +.+..+| +++++.+.-....++.+.++++..++++.|| ||++..+....+
T Consensus 95 ~kIavvg~~~~~~~-----~-~~~~~ll---~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvV---G~~~~~~~A~~~ 159 (196)
T 2q5c_A 95 NELALIAYKHSIVD-----K-HEIEAML---GVKIKEFLFSSEDEITTLISKVKTENIKIVV---SGKTVTDEAIKQ 159 (196)
T ss_dssp SEEEEEEESSCSSC-----H-HHHHHHH---TCEEEEEEECSGGGHHHHHHHHHHTTCCEEE---ECHHHHHHHHHT
T ss_pred CcEEEEeCcchhhH-----H-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCeEEE---CCHHHHHHHHHc
Confidence 47777765543221 1 3566666 5778888889999999999999888998876 588877776543
No 134
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=47.56 E-value=50 Score=30.00 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=46.2
Q ss_pred HhHHHHHHhcCCeEEEEecC---ChhHHHHHHHHhhcCC-CceEEEEcCCC-hHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETT---QQLHAKEIVKVLDLSK-YDGIVCVSGDG-ILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~---~~~~a~~l~~~~~~~~-~d~IV~vGGDG-tl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+-++..+++.|+++.+..+. ......+.++.+...+ +|+||+.+-|. ...+.+..+.+. ++|+-.+-.
T Consensus 20 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~-------~ipvV~~~~ 92 (276)
T 3ksm_A 20 LGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRAR-------NIPVLVVDS 92 (276)
T ss_dssp HHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEESS
T ss_pred HHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHC-------CCcEEEEec
Confidence 57788888889988877643 2223334556665567 99999999764 455677776554 678777644
Q ss_pred C
Q 011517 206 G 206 (484)
Q Consensus 206 G 206 (484)
.
T Consensus 93 ~ 93 (276)
T 3ksm_A 93 D 93 (276)
T ss_dssp C
T ss_pred C
Confidence 3
No 135
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=47.13 E-value=35 Score=32.62 Aligned_cols=113 Identities=12% Similarity=0.076 Sum_probs=66.9
Q ss_pred hhhcCCCcEEEEEEcCCCC-------CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCceEE-
Q 011517 103 IDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDGIV- 171 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~sG-------~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~IV- 171 (484)
++-..+|+++.+|||-..= .+.+...=.+.++..|+..|+++++..=-...+..+.++++.. .++|.+|
T Consensus 37 Y~m~~~~rg~aLIInN~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~d~~vv 116 (277)
T 4ehd_A 37 YKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVC 116 (277)
T ss_dssp CCCCSSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEE
T ss_pred ccCCCCCCCEEEEEEchhcCCcCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhhcccCCCEEEE
Confidence 3334568889888873211 1222222346899999999999998887777777777777653 3455432
Q ss_pred E----------EcCCCh--HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 172 C----------VSGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 172 ~----------vGGDGt--l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
+ +|=||. +.++++-+-......-+-++-|-+|-+=-||.+...+
T Consensus 117 ~ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g~ 172 (277)
T 4ehd_A 117 VLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGI 172 (277)
T ss_dssp EEESCEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCCC
T ss_pred EEEcCCCCCEEEEeCCcEeHHHHHHHhhhccCchhcCCccEEEEecCCCCcccCCc
Confidence 3 344443 3444444332211112235678888887777765543
No 136
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=46.86 E-value=17 Score=32.78 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=52.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh------------HHHHHHHHhhcCCCceEEEEcCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL------------HAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~------------~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
+++++|++-|..- ... + ......|+.+|++++++-.+... .+.....+++...||.|++.||.
T Consensus 2 ~~kV~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~ 76 (205)
T 2ab0_A 2 SASALVCLAPGSE---ETE-A-VTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76 (205)
T ss_dssp CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCH
T ss_pred CcEEEEEEcCCCc---HHH-H-HHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCc
Confidence 5688888877431 111 1 13456788899888876544320 01111234444679999999997
Q ss_pred ChHHH-----HHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 177 GILVE-----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 177 Gtl~e-----vingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
+.... -+..++.+.. ....+|+-|=.|.+--+|.
T Consensus 77 ~~~~~l~~~~~l~~~l~~~~---~~gk~i~aiC~G~~~lLa~ 115 (205)
T 2ab0_A 77 KGAECFRDSTLLVETVKQFH---RSGRIVAAICAAPATVLVP 115 (205)
T ss_dssp HHHHHHHHCHHHHHHHHHHH---HTTCEEEEETHHHHHHTTT
T ss_pred ccHHHhccCHHHHHHHHHHH---HcCCEEEEECHhHHHHHHH
Confidence 53321 1212222110 1246788887776444554
No 137
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=46.55 E-value=36 Score=31.75 Aligned_cols=89 Identities=9% Similarity=0.140 Sum_probs=53.4
Q ss_pred CCCcEEEEEEc----CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 107 GRPKRLYIFVN----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 107 ~~~~r~lviiN----P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
++.+.+.|++. |.....--..+ .+-++..+++.|+.+.+..+..... ..++.+.+...++|+||+++.+.+ .+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~f~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 5 NQTYKIGLVLKGSEEPIRLNPFYINV-LLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp CCSCEEEEECSCCCHHHHSCHHHHHH-HHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CCCcEEEEEeecCCcccccChHHHHH-HHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 45667777772 11111111222 3567788888898887766554322 345566666678999999987754 24
Q ss_pred HHHHHhcCcCcccccCCcEEEec
Q 011517 182 VVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 182 vingL~~~~~~~~~~~~pigiIP 204 (484)
.+..|... .+|+-.+=
T Consensus 83 ~~~~l~~~-------~iPvV~i~ 98 (295)
T 3hcw_A 83 IKQMLIDE-------SMPFIVIG 98 (295)
T ss_dssp HHHHHHHT-------TCCEEEES
T ss_pred HHHHHHhC-------CCCEEEEC
Confidence 55555443 57776663
No 138
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=45.50 E-value=21 Score=32.22 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
.|+++.+.+...++ .||.-||. |....+..|..+.. ...+|++|.-
T Consensus 32 ~A~~lg~~la~~g~-~lv~GGG~~GlM~a~~~ga~~~G------G~viGv~p~~ 78 (189)
T 3sbx_A 32 LAGAVGAAIAARGW-TLVWGGGHVSAMGAVSSAARAHG------GWTVGVIPKM 78 (189)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHTTT------CCEEEEEETT
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEcCch
Confidence 45667777765444 45555567 99888888887753 5789999974
No 139
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=45.37 E-value=1.4e+02 Score=28.71 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEE-EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----G-RPKRL-YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-~~~r~-lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~ 160 (484)
+.++...+.+++.+..+ + +...+ .|++ |...|.+.|.+.-....++.|+++..+. +..+.+..+.++
T Consensus 13 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~ 88 (300)
T 4a26_A 13 AIAAAIRSELKDKVAALRELYGGRVPGLASIIV----GQRMDSKKYVQLKHKAAAEVGMASFNVELPEDISQEVLEVNVE 88 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 45566666666554322 3 33344 4555 4556778898888999999999887765 345666777777
Q ss_pred HhhcC-CCceEEE
Q 011517 161 VLDLS-KYDGIVC 172 (484)
Q Consensus 161 ~~~~~-~~d~IV~ 172 (484)
+++.+ +.|+|++
T Consensus 89 ~lN~d~~v~GIlV 101 (300)
T 4a26_A 89 KLNNDPNCHGIIV 101 (300)
T ss_dssp HHHTCTTCCEEEE
T ss_pred HhcCCCCCCEEEE
Confidence 77654 5777765
No 140
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=45.01 E-value=45 Score=31.17 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=44.8
Q ss_pred HhHHHHHHhcCCeEEEEecCChhH-HHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLH-AKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~-a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+-++..+++.|+.+.+..+..... ..++.+.+...++|+||+++.+.. .+.+..|... .+|+-.+=.
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~-------~iPvV~i~~ 114 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEF-------KVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHT-------TCCEEEESC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHc-------CCCEEEECC
Confidence 467777888898887766654332 245566666678999999987654 2556655443 577766643
No 141
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=44.69 E-value=32 Score=30.57 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=33.6
Q ss_pred HHHHHHHHhhcCCCceEEEEcC-CChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSG-DGILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGG-DGtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
.|+++++.+...++ .||.-|| -|....+..+.++.. ...+|+||..
T Consensus 33 ~A~~lg~~La~~g~-~lVsGGg~~Gim~aa~~gAl~~g------G~tigVlP~~ 79 (176)
T 2iz6_A 33 MANELGKQIATHGW-ILLTGGRSLGVMHEAMKGAKEAG------GTTIGVLPGP 79 (176)
T ss_dssp HHHHHHHHHHHTTC-EEEEECSSSSHHHHHHHHHHHTT------CCEEEEECC-
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHhHHHHHHHHHcC------CEEEEEeCch
Confidence 45566677765444 6777777 899999999988753 5799999976
No 142
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=44.52 E-value=64 Score=29.95 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=48.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+.+.|++...+..--+..++ +-++..+++.|+.+.+..+.. .....++.+.+...++|+||+++.+..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~ 82 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIV-RGIQDWANANGKTILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRR 82 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHH-HHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHH-HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCcc
Confidence 45677888886554333331333 578888999999988877754 333456667776678999999987743
No 143
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=44.17 E-value=1.4e+02 Score=28.13 Aligned_cols=88 Identities=10% Similarity=0.168 Sum_probs=51.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+.+.|++.-. ...-...+ .+-++..+++.|+++.+..+... ....++.+.+...++|+||+++.+.. .+.+..
T Consensus 56 ~~~~~Igvi~~~~-~~~~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 132 (340)
T 1qpz_A 56 NHTKSIGLLATSS-EAAYFAEI-IEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAM 132 (340)
T ss_dssp TCCSEEEEEESCS-CSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHH
T ss_pred CCCCEEEEEeCCC-CChHHHHH-HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHH
Confidence 4566777777433 22112222 34677778888988877666432 23344566666678999999988754 233333
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
|... .++|+-++
T Consensus 133 l~~~------~~iPvV~~ 144 (340)
T 1qpz_A 133 LEEY------RHIPMVVM 144 (340)
T ss_dssp HHTT------TTSCEEEE
T ss_pred HHhh------CCCCEEEE
Confidence 3321 25676655
No 144
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=44.14 E-value=1.1e+02 Score=29.29 Aligned_cols=78 Identities=6% Similarity=0.044 Sum_probs=48.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|.... . .+.... +..+..|+++|+++... ......+....++++...+.|+|++.+.|.....++..
T Consensus 150 g~~~ia~i~~~~-~--~~~~~~-~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~ 225 (375)
T 4evq_A 150 GLKKAVTVTWKY-A--AGEEMV-SGFKKSFTAGKGEVVKDITIAFPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKD 225 (375)
T ss_dssp TCCEEEEEEESS-H--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHH
T ss_pred CCcEEEEEecCc-h--HHHHHH-HHHHHHHHHcCCeEEEEEecCCCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 457888886321 1 222222 56778889999876322 22222233444555544578999998999888888888
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 226 ~~~~ 229 (375)
T 4evq_A 226 YAAA 229 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 145
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=44.06 E-value=1.4e+02 Score=25.92 Aligned_cols=57 Identities=21% Similarity=0.155 Sum_probs=42.3
Q ss_pred HHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 130 LDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.++....|+..|++|++... +.+.+..+++++... -=.|+++|+.+-|--++-++..
T Consensus 15 ~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~--~ViIa~AG~aa~Lpgvva~~t~ 74 (157)
T 2ywx_A 15 AEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA--DVFIAIAGLAAHLPGVVASLTT 74 (157)
T ss_dssp HHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCC--SEEEEEEESSCCHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCC--CEEEEEcCchhhhHHHHHhccC
Confidence 46888899999999988765 334555666666532 2267788999999999998864
No 146
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=43.79 E-value=67 Score=29.84 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=24.1
Q ss_pred CCCceEEEEcCCChHH-----HHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 165 SKYDGIVCVSGDGILV-----EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~-----evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
..||+|++.||-|... +-+..++.+.. ...-+|+.|=.|.
T Consensus 97 ~~yD~l~vpGG~~~~~~l~~~~~l~~~l~~~~---~~gk~iaaIC~G~ 141 (244)
T 3kkl_A 97 SDYKVFFASAGHGALFDYPKAKNLQDIASKIY---ANGGVIAAICHGP 141 (244)
T ss_dssp GGCSEEEECCSTTHHHHGGGCHHHHHHHHHHH---HTTCEEEEETTGG
T ss_pred hhCCEEEEcCCCchhhhcccCHHHHHHHHHHH---HcCCEEEEECHHH
Confidence 5699999999999742 22222222211 1256788877665
No 147
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=43.76 E-value=52 Score=29.44 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=26.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA 155 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a 155 (484)
||++|-+.=.+| +.+. -++...|.+.|++++++.|+...+.
T Consensus 2 k~IllgvTGs~a---a~k~--~~l~~~L~~~g~~V~vv~T~~A~~~ 42 (189)
T 2ejb_A 2 QKIALCITGASG---VIYG--IKLLQVLEELDFSVDLVISRNAKVV 42 (189)
T ss_dssp CEEEEEECSSTT---HHHH--HHHHHHHHHTTCEEEEEECHHHHHH
T ss_pred CEEEEEEECHHH---HHHH--HHHHHHHHHCCCEEEEEEChhHHHH
Confidence 577777744444 3322 3455667778999999999875543
No 148
>1nw9_B Caspase 9, apoptosis-related cysteine protease; XIAP, caspase inhibition, caspase activation, dimerization; 2.40A {Homo sapiens} SCOP: c.17.1.1 PDB: 1jxq_A* 2ar9_A
Probab=43.69 E-value=87 Score=29.63 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=43.7
Q ss_pred hhcCCCcEEEEEEcCCCC-------CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCce
Q 011517 104 DSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG 169 (484)
Q Consensus 104 ~~~~~~~r~lviiNP~sG-------~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~ 169 (484)
+-..+|+++.+|||-..= .+.+...=.+.++..|+..|+++++..=-...+..+.++++.. ..+|.
T Consensus 15 ~m~~~~rg~aLIInn~~f~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~h~~~D~ 90 (277)
T 1nw9_B 15 ILSMEPCGHCLIINNVNFCRESGLRTRTGSNIDCEKLRRRFSSLHFMVEVKGDLTAKKMVLALLELARQDHGALDC 90 (277)
T ss_dssp CCCCSSCEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTEEEEEEESCCHHHHHHHHHHHHHSCCTTCSE
T ss_pred eCCCCcccEEEEEeCcccCCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhhcccCCe
Confidence 334568888888876532 2223333446899999999999988877777777776666542 34563
No 149
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=43.34 E-value=56 Score=29.82 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCChH---------------HHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 165 SKYDGIVCVSGDGIL---------------VEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl---------------~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
.+||.|++.||-|.. ++-+..++.+.. ....+|+-|=.|+. .+|..|
T Consensus 89 ~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~gk~vaaIC~G~~-~La~aL 150 (232)
T 1vhq_A 89 AELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMH---QAGKPLGFMCIAPA-MLPKIF 150 (232)
T ss_dssp GGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHH---HTTCCEEEETTGGG-GHHHHC
T ss_pred ccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHH---HcCCEEEEECHHHH-HHHHHh
Confidence 479999999998862 222222222211 12568888888875 566665
No 150
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=43.31 E-value=82 Score=28.30 Aligned_cols=67 Identities=18% Similarity=0.183 Sum_probs=41.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDG 177 (484)
.+.+.|++.-.+. .--..+ .+-++..+++.|+.+.+..+.. .....++.+.+...++|+||+.+.+.
T Consensus 2 s~~Igvi~~~~~~-~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 69 (255)
T 1byk_A 2 DKVVAIIVTRLDS-LSENLA-VQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRNIDGVVLFGFTG 69 (255)
T ss_dssp CCEEEEEESCTTC-HHHHHH-HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCCC-ccHHHH-HHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 4566677643222 111222 2466777888899888776653 33334566676667899999998754
No 151
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=42.85 E-value=28 Score=30.70 Aligned_cols=98 Identities=18% Similarity=0.171 Sum_probs=50.3
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHH----------HHHHHHhhcCCCceEEEEcCC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHA----------KEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a----------~~l~~~~~~~~~d~IV~vGGD 176 (484)
+++||++|++-|..- ... + ......|+.+|++++++-.+..+.. .....++....||.|++.||.
T Consensus 3 ~m~kkv~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~ 77 (190)
T 4e08_A 3 HMSKSALVILAPGAE---EME-F-IIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGL 77 (190)
T ss_dssp -CCCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCH
T ss_pred CCCcEEEEEECCCch---HHH-H-HHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCC
Confidence 356788888865321 111 1 1345678889988887755431110 000123333479999999995
Q ss_pred -ChHH----HHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 177 -GILV----EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 177 -Gtl~----evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
|.-. +-+..++++. .....+|+-|=.|+. .+|.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~---~~~~k~i~aiC~G~~-~La~ 115 (190)
T 4e08_A 78 GGSNAMGESSLVGDLLRSQ---ESGGGLIAAICAAPT-VLAK 115 (190)
T ss_dssp HHHHHHHHCHHHHHHHHHH---HHTTCEEEEETTTHH-HHHH
T ss_pred hHHHHhhhCHHHHHHHHHH---HHCCCEEEEECHHHH-HHHH
Confidence 3311 1111122111 012467888877763 3443
No 152
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=42.72 E-value=1e+02 Score=28.37 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=48.5
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe-cC-ChhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE-TT-QQLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNG 185 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~-T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~eving 185 (484)
++++.+++ |..+..-... +.+-++..+++.|+++.++. +. ......+.++.+...++|+||+.+.|.. ..+.+..
T Consensus 4 ~~~Ig~i~-~~~~~~~~~~-~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~ 81 (303)
T 3d02_A 4 EKTVVNIS-KVDGMPWFNR-MGEGVVQAGKEFNLNASQVGPSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKK 81 (303)
T ss_dssp CEEEEEEC-SCSSCHHHHH-HHHHHHHHHHHTTEEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHH
T ss_pred ceEEEEEe-ccCCChHHHH-HHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHH
Confidence 34454444 5444322222 23466777788887776543 32 2333345566665578999999888754 2345555
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
+... ++|+-.+
T Consensus 82 ~~~~-------~ipvV~~ 92 (303)
T 3d02_A 82 ARDA-------GIVVLTN 92 (303)
T ss_dssp HHHT-------TCEEEEE
T ss_pred HHHC-------CCeEEEE
Confidence 5433 5676655
No 153
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=42.70 E-value=31 Score=33.87 Aligned_cols=68 Identities=18% Similarity=0.160 Sum_probs=42.5
Q ss_pred cEEEEEEcCCCCCcc-hhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHHhhcCCCceEEE-EcCCC
Q 011517 110 KRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGDG 177 (484)
Q Consensus 110 ~r~lviiNP~sG~~~-a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~IV~-vGGDG 177 (484)
.--.-|+.|.|+-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+...+.|+|+| .||+|
T Consensus 13 GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 91 (336)
T 3sr3_A 13 GDTIGIYSPSSPVTYTSPKRF-ERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIGGMN 91 (336)
T ss_dssp TCEEEEECSSSCHHHHCHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCCCSC
T ss_pred CCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEcccccc
Confidence 345678899887532 22335 466778999998877643321 223455655555567787765 58999
Q ss_pred h
Q 011517 178 I 178 (484)
Q Consensus 178 t 178 (484)
+
T Consensus 92 ~ 92 (336)
T 3sr3_A 92 S 92 (336)
T ss_dssp G
T ss_pred H
Confidence 6
No 154
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=42.55 E-value=85 Score=27.02 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCCceEEEEcCCChHHHHHHHHhcC
Q 011517 165 SKYDGIVCVSGDGILVEVVNGLLER 189 (484)
Q Consensus 165 ~~~d~IV~vGGDGtl~evingL~~~ 189 (484)
..+|.+|.++|||=+..+++.|-++
T Consensus 107 ~~~d~~vLvSgD~DF~plv~~lr~~ 131 (165)
T 2qip_A 107 PDVDRVILVSGDGDFSLLVERIQQR 131 (165)
T ss_dssp GGCSEEEEECCCGGGHHHHHHHHHH
T ss_pred ccCCEEEEEECChhHHHHHHHHHHH
Confidence 5799999999999999999998763
No 155
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=42.31 E-value=1.7e+02 Score=27.79 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=40.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh--hHHHHHHHHhhcCCCceEEEEcC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ--LHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~--~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
++.+.+.|++.... ..--..++ +-++..+++.|+.+.+..+... ....+..+.+...++|+||+++.
T Consensus 59 ~~~~~Igvi~~~~~-~~~~~~~~-~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~ 127 (349)
T 1jye_A 59 KQSLLIGVATSSLA-LHAPSQIV-AAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYP 127 (349)
T ss_dssp ---CEEEEEESCTT-SHHHHHHH-HHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred CCCCEEEEEeCCCC-cccHHHHH-HHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEecC
Confidence 34556767663322 11112233 4677778889998888776543 33345566666678999999864
No 156
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=42.27 E-value=80 Score=29.91 Aligned_cols=112 Identities=14% Similarity=0.060 Sum_probs=63.3
Q ss_pred hhhcCCCcEEEEEEcCCC------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCce-EEE
Q 011517 103 IDSFGRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IVC 172 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~s------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~-IV~ 172 (484)
++-..+++++.+|||-.. ....+...=.+.++..|+..|+++++..=-...+..+.++++.. .++|. |++
T Consensus 25 Y~m~~~~rg~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~dh~~~d~~v~~ 104 (272)
T 1m72_A 25 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVA 104 (272)
T ss_dssp CCCCSSEEEEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred ccCCCCCCCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 333356778888877431 12223333346899999999999999887777777777777643 34553 333
Q ss_pred EcC----------CCh--HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 173 VSG----------DGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 173 vGG----------DGt--l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
+=| ||. +.++++-+-......-+-++-|-+|-+=-||.+...
T Consensus 105 ~lsHG~~~~i~~~D~~v~l~~i~~~f~~~~cpsL~gKPKlffiqACRg~~~~~g 158 (272)
T 1m72_A 105 VLTHGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDGG 158 (272)
T ss_dssp EESCEETTEEECSSSEECTTHHHHTTSTTTCGGGTTSCEEEEEESCSSSBCBCC
T ss_pred EcCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEeCCCCCcccCC
Confidence 332 332 223333222111111122566777877667766543
No 157
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=42.14 E-value=30 Score=28.77 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=47.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCC-CceEEEEc---CCC------hHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSK-YDGIVCVS---GDG------ILV 180 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~-~d~IV~vG---GDG------tl~ 180 (484)
+++|++= |..|.+.+ +.+.+...+...|++++++...... ..++.+ +|.||++. |.| .+.
T Consensus 2 ki~iiy~--S~~Gnt~~-~a~~i~~~l~~~g~~v~~~~~~~~~-------~~~l~~~~d~ii~~~p~y~~g~~~~p~~~~ 71 (147)
T 1f4p_A 2 KALIVYG--STTGNTEY-TAETIARELADAGYEVDSRDAASVE-------AGGLFEGFDLVLLGCSTWGDDSIELQDDFI 71 (147)
T ss_dssp EEEEEEE--CSSSHHHH-HHHHHHHHHHHHTCEEEEEEGGGCC-------STTTTTTCSEEEEEECEECSSSCEECTTTH
T ss_pred eEEEEEE--CCcCHHHH-HHHHHHHHHHhcCCeeEEEehhhCC-------HHHhcCcCCEEEEEeCCCCCCCcCCChhHH
Confidence 5677763 33455554 4468888888888888776432211 012456 89888753 333 455
Q ss_pred HHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
.++.-|... + ....+++++=+|.+
T Consensus 72 ~fl~~l~~~-~---l~~k~~~v~~~g~~ 95 (147)
T 1f4p_A 72 PLFDSLEET-G---AQGRKVACFGCGDS 95 (147)
T ss_dssp HHHHTGGGS-C---CTTCEEEEEEEECT
T ss_pred HHHHHHHhc-c---cCCCEEEEEeecCC
Confidence 555554321 1 12456776665544
No 158
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=42.03 E-value=55 Score=30.08 Aligned_cols=66 Identities=11% Similarity=0.274 Sum_probs=42.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCe-EEEEecCCh-hHHHHHHHHhhcCCCceEEEEc
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQ-FTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~-~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vG 174 (484)
++.+++.|++...+.. --.. +.+-++..+++.|++ +.+..+... ....++.+.+...++|+||+++
T Consensus 8 ~~~~~Igvi~~~~~~~-~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNR-FYAQ-IIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCCCEEEEEESCTTSH-HHHH-HHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCCCEEEEEeCCCCCh-hHHH-HHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc
Confidence 4566777777544322 1222 335677888889998 777666543 2334456666667899999998
No 159
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=41.94 E-value=84 Score=29.28 Aligned_cols=108 Identities=12% Similarity=0.084 Sum_probs=65.1
Q ss_pred CCCcEEEEEEcCCCC-------CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCce-EEEEcC
Q 011517 107 GRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IVCVSG 175 (484)
Q Consensus 107 ~~~~r~lviiNP~sG-------~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~-IV~vGG 175 (484)
..++++.+|||-..= ...+...=.+.++..|+..|+++++..=-...+..+.++++.. ..+|. |+++-|
T Consensus 13 ~~~rg~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~~~~~d~~v~~~ls 92 (250)
T 2j32_A 13 YPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLS 92 (250)
T ss_dssp SSEEEEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHTSCCTTEEEEEEEEES
T ss_pred CCCccEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCEEEEEECC
Confidence 456778777775311 2223323346899999999999998887777777777777653 23553 333333
Q ss_pred ----------CC--hHHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 176 ----------DG--ILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 176 ----------DG--tl~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
|| .+.++++-+-......-+-++-|-+|-+=-||.+...
T Consensus 93 HG~~g~i~~~D~~v~l~~i~~~f~~~~cp~L~gKPKlf~iqACRg~~~~~g 143 (250)
T 2j32_A 93 HGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCG 143 (250)
T ss_dssp CEETTEEEETTEEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCSEEECBCC
T ss_pred CCCCCeEEecCCcEEHHHHHHHhccccChhHcCCCeEEEEecccCCcccCC
Confidence 33 2445555443221111233677888888888877553
No 160
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=41.59 E-value=23 Score=27.95 Aligned_cols=28 Identities=18% Similarity=0.025 Sum_probs=23.7
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
.+.+.|...++++.+.|+++|+....+.
T Consensus 76 ~r~~~l~A~s~~e~~~Wi~al~~~~~~~ 103 (107)
T 2cof_A 76 EELAKLEAKSSEEMGHWLGLLLSESGSG 103 (107)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHSSCS
T ss_pred CeEEEEEcCCHHHHHHHHHHHHHHHcCC
Confidence 3568899999999999999999887654
No 161
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=41.50 E-value=45 Score=30.59 Aligned_cols=43 Identities=12% Similarity=0.045 Sum_probs=26.5
Q ss_pred CcEEEEEE-cCCCC--CcchhhchHHhHHHHHHhcCCeEEEEecCC
Q 011517 109 PKRLYIFV-NPFGG--KKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (484)
Q Consensus 109 ~~r~lvii-NP~sG--~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~ 151 (484)
.++++||. .|.-+ ++...+.+.+.+...++++|.+++++....
T Consensus 25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~ 70 (218)
T 3rpe_A 25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQ 70 (218)
T ss_dssp CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCC
Confidence 45666665 77632 122222345678888888899888876543
No 162
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=41.47 E-value=1.4e+02 Score=25.81 Aligned_cols=57 Identities=23% Similarity=0.254 Sum_probs=37.4
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhc-CCCceEEEEcCCCh-----HHHHHHHHh
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLL 187 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~-~~~d~IV~vGGDGt-----l~evingL~ 187 (484)
..+...|++.|+++.. +.........+.++++.. .++|.||+.||=|. ..|++..++
T Consensus 34 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~ 98 (169)
T 1y5e_A 34 QLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRDVTIEAVSALL 98 (169)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTCCHHHHHHTTC
T ss_pred HHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCCcHHHHHHHc
Confidence 4688889999987543 445555555555555542 27999999999764 345555443
No 163
>3opy_A 6-phosphofructo-1-kinase alpha-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=40.83 E-value=19 Score=40.44 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=38.3
Q ss_pred HHHHHHhhcCCCceEEEEcCCChHHHHHHHHh-----------cC-----cCcccccCCcEEEecCCCchhhhh
Q 011517 156 KEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL-----------ER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 156 ~~l~~~~~~~~~d~IV~vGGDGtl~evingL~-----------~~-----~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.++++.+...+.|.+|++|||||+.-+. .|. ++ ........+++--||.==-||++-
T Consensus 294 ~~~~~~L~~~gId~LvvIGGDGS~~gA~-~L~~e~~~l~~eL~~~gkls~~~~~~~~~i~VVGIPkTIDNDl~g 366 (989)
T 3opy_A 294 LQACYNMVSNGIDALVVCGGDGSLTGAD-LFRKEWPELIKELLGEDKITKEQYETHRNLTIVGLVGSIDNDMCG 366 (989)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHHHHH-HHHHHTTCCCCC--------CHHHHHTTSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHHcCCCEEEEeCCChhhHHHH-HHHHHhhHHHHHHHHccccchhhhhccCCCcEEEEeecccCCCCC
Confidence 3456666667899999999999987543 221 11 000112368999999988999985
No 164
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=40.67 E-value=92 Score=30.20 Aligned_cols=112 Identities=12% Similarity=0.107 Sum_probs=61.8
Q ss_pred hhhcCC-CcEEEEEEcCCC-----CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---C-CCceEE-
Q 011517 103 IDSFGR-PKRLYIFVNPFG-----GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S-KYDGIV- 171 (484)
Q Consensus 103 ~~~~~~-~~r~lviiNP~s-----G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~-~~d~IV- 171 (484)
++-..+ ++++.+|||-.. ..+.+...=.+.++.+|+..|+++++..=-...+..+.++++.. . ++|.+|
T Consensus 53 Y~m~~~~~rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~~h~~~~D~~vv 132 (316)
T 2fp3_A 53 YKMQSRFNRGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIFPYGNVNQDQFFKLLTMVTSSSYVQNTECFVM 132 (316)
T ss_dssp CCCCCSSCSEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEEEECSCCHHHHHHHHHHHHTSHHHHTCSCEEE
T ss_pred ccCCCCCCCcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEccCCCHHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 433345 788888887542 33333334456899999999999988877777777766666532 2 455322
Q ss_pred EE--------------cCCCh---HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 172 CV--------------SGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 172 ~v--------------GGDGt---l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
++ |=||. +.++++-+-......-+-++-|-+|-+=-||.+...
T Consensus 133 ~ilSHG~~~~g~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~g 192 (316)
T 2fp3_A 133 VLMTHGNSVEGKEKVEFRDGSVVDMQKIKDHFQTAKCPYLVNKPKVLMFPFARGDEYDLG 192 (316)
T ss_dssp EEESCEECCTTCCEEECTTSCEEEHHHHHHTTSTTTCGGGTTSCEEEEESCC--------
T ss_pred EEccCCCccCCCCEEEeecCcEEeHHHHHHHhccccChhhcCCceEEEEecCCCCcccCC
Confidence 22 22553 555555443322111223677888888777777544
No 165
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=40.03 E-value=25 Score=31.89 Aligned_cols=46 Identities=17% Similarity=0.289 Sum_probs=32.7
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
.|+++.+.+...++ .||.-||. |....+..|.++.. ...+|++|..
T Consensus 41 ~A~~lg~~La~~g~-~lV~GGG~~GlM~a~~~gA~~~G------G~viGv~p~~ 87 (199)
T 3qua_A 41 LAAEVGSSIAARGW-TLVSGGGNVSAMGAVAQAARAKG------GHTVGVIPKA 87 (199)
T ss_dssp HHHHHHHHHHHTTC-EEEECCBCSHHHHHHHHHHHHTT------CCEEEEEEGG
T ss_pred HHHHHHHHHHHCCC-EEEECCCccCHHHHHHHHHHHcC------CcEEEEeCch
Confidence 45666677665444 45666676 99999998887653 5789999974
No 166
>3o8o_B 6-phosphofructokinase subunit beta; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=40.03 E-value=29 Score=38.18 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=37.8
Q ss_pred HHHHhhcCCCceEEEEcCCChHHHHH----------HHHhcC-----cCcccccCCcEEEecCCCchhhhhh
Q 011517 158 IVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 158 l~~~~~~~~~d~IV~vGGDGtl~evi----------ngL~~~-----~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
+++.+...+.|.+|++|||||+.-+- +.|.+. ........+++--||.==-||++-.
T Consensus 90 ~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGiPkTIDNDl~gT 161 (766)
T 3o8o_B 90 GAQHLIEAGVDALIVCGGDGSLTGADLFRSEWPSLIEELLKTNRISNEQYERMKHLNICGTVGSIDNDMSTT 161 (766)
T ss_dssp HHHHHHHHTCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHTCCCEEEEEEBCTTCCCTTC
T ss_pred HHHHHHHcCCCEEEEeCCChhHHHHHHHHHhhhHHHHHHHhcccccHHHHhcCCCCcEEEEeccccCCCCCC
Confidence 44555555789999999999987542 233321 0011123688999999889999863
No 167
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=39.90 E-value=40 Score=33.69 Aligned_cols=69 Identities=14% Similarity=0.139 Sum_probs=44.5
Q ss_pred CcEEEEEEcCCCCCcc-hhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHHhhcCCCceEEE-EcCC
Q 011517 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGD 176 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~-a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~IV~-vGGD 176 (484)
+.--.-||.|.|+-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....|+|+| .||+
T Consensus 42 ~GD~I~ivaPSs~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGGy 120 (371)
T 3tla_A 42 VGDTIGFFSSSAPATVTAKNRF-FRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGGD 120 (371)
T ss_dssp TTCEEEEECSSCCHHHHTHHHH-HHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 4445778899987532 23345 466778999998877643322 223556666655567787777 6999
Q ss_pred Ch
Q 011517 177 GI 178 (484)
Q Consensus 177 Gt 178 (484)
|+
T Consensus 121 ga 122 (371)
T 3tla_A 121 NS 122 (371)
T ss_dssp CG
T ss_pred cH
Confidence 96
No 168
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=39.86 E-value=1.2e+02 Score=27.64 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=41.6
Q ss_pred HhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+..+... ....+..+.+...+.|+||+.+.|.. +.+.+..+.+. .+|+-++
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~i 88 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQA-------NIPVITL 88 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCcEEEe
Confidence 4667778888988777655432 22234556665678999999887643 23455555433 5777666
No 169
>3o8o_A 6-phosphofructokinase subunit alpha; transferase; HET: F6P FDP; 2.90A {Saccharomyces cerevisiae}
Probab=39.86 E-value=19 Score=39.59 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHH----------HHHhcC-----cCcccccCCcEEEecCCCchhhhh
Q 011517 157 EIVKVLDLSKYDGIVCVSGDGILVEVV----------NGLLER-----EDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDGtl~evi----------ngL~~~-----~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
.+++.+...+.|.+|++|||||+.-+- +.|.+. ........+++--||.==-||++-
T Consensus 90 ~~~~~l~~~~Id~LvvIGGdgS~~~A~~l~~e~~~l~~eL~~~~~is~e~~~~~~~i~vVGIPkTIDNDl~g 161 (787)
T 3o8o_A 90 QAAGNLISQGIDALVVCGGDGSLTGADLFRHEWPSLVDELVAEGRFTKEEVAPYKNLSIVGLVGSIDNDMSG 161 (787)
T ss_dssp HHHHHHHHHTEEEEEEEECHHHHHHHHHHHTTHHHHHHHHHSSSSCCTTTTTTTCSCEEEEEEEESSCCCTT
T ss_pred HHHHHHHHcCCCEEEEeCCCchHHHHHHHHHhhHHHHHHHHhcccccHHHHhcCCCCcEEEEeecCcCCCCC
Confidence 345555555789999999999987542 233321 111223468999999988899985
No 170
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=39.76 E-value=48 Score=29.27 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=51.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh----------HHHHHHHHh-hcCCCceEEEEcCCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----------HAKEIVKVL-DLSKYDGIVCVSGDG 177 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~----------~a~~l~~~~-~~~~~d~IV~vGGDG 177 (484)
++++.|++-|..- ... + ......|+.+|++++++-..... .+.....+. +...||.|++.||.+
T Consensus 3 ~~~v~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~ 77 (197)
T 2rk3_A 3 SKRALVILAKGAE---EME-T-VIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNL 77 (197)
T ss_dssp CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHH
T ss_pred CCEEEEEECCCCc---HHH-H-HHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCch
Confidence 5788888866321 111 1 13556788899888776543210 000011233 446899999999975
Q ss_pred hHHH-----HHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 178 ILVE-----VVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 178 tl~e-----vingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.... -+..++++.. ....+|+-|=.|+. .+|+.
T Consensus 78 ~~~~l~~~~~~~~~l~~~~---~~gk~i~aiC~G~~-~La~a 115 (197)
T 2rk3_A 78 GAQNLSESAAVKEILKEQE---NRKGLIATICAGPT-ALLAH 115 (197)
T ss_dssp HHHHHHHCHHHHHHHHHHH---HTTCEEEEETTTHH-HHHHT
T ss_pred hHHHhhhCHHHHHHHHHHH---HcCCEEEEECHHHH-HHHHC
Confidence 3321 1112222110 12468888887764 55544
No 171
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=39.46 E-value=26 Score=28.32 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=23.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 93 ~~~~f~A~s~~e~~~Wi~ai~~~~~~~ 119 (123)
T 1wjm_A 93 KEYLFQAKDEAEMSSWLRVVNAAIASG 119 (123)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 578899999999999999999987654
No 172
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=39.38 E-value=2.3e+02 Score=26.58 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=68.2
Q ss_pred hhhcCCCcEEEEEEcCCC--------------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---C
Q 011517 103 IDSFGRPKRLYIFVNPFG--------------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---S 165 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~s--------------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~ 165 (484)
+.-..+|+++.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++.. .
T Consensus 10 Y~m~~~~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~ 89 (271)
T 3h11_B 10 YQMKSKPRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIKPHDDCTVEQIYEILKIYQLMDHS 89 (271)
T ss_dssp CCCCSSSCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHSCCT
T ss_pred CCCCCCCCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 333456778887777521 11222223346899999999999998877777777777766543 3
Q ss_pred CCceEE-----------EEcCCCh---HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 166 KYDGIV-----------CVSGDGI---LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 166 ~~d~IV-----------~vGGDGt---l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
++|.+| ++|=||. +.++++-+-......-+-++-|-+|-+=-||.+...+
T Consensus 90 ~~d~~v~~ilSHG~~g~i~g~D~~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~gv 153 (271)
T 3h11_B 90 NMDCFICCILSHGDKGIIYGTDGQEAPIYELTSQFTGLKCPSLAGKPKVFFIQACQGDNYQKGI 153 (271)
T ss_dssp TCSCEEEEEESCEETTEEECTTSCEEEHHHHHGGGSTTTCGGGTTSCEEEEEESCCSSBCC---
T ss_pred CCCEEEEEEEcCCcCCEEEecCCCeecHHHHHHHhhhccChhhcCCccEEEEeccCCCcccCCc
Confidence 566443 2466763 5666665543222222335778889887777765543
No 173
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=39.38 E-value=78 Score=28.17 Aligned_cols=45 Identities=9% Similarity=-0.021 Sum_probs=35.0
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHH
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~ 159 (484)
+..|.|+++|-||.. ..-.+...|...| ++-++....++.+..+.
T Consensus 2 vI~v~s~KGGvGKTT--~a~~LA~~la~~g-~VlliD~D~q~~~~~~~ 46 (209)
T 3cwq_A 2 IITVASFKGGVGKTT--TAVHLSAYLALQG-ETLLIDGDPNRSATGWG 46 (209)
T ss_dssp EEEEEESSTTSSHHH--HHHHHHHHHHTTS-CEEEEEECTTCHHHHHH
T ss_pred EEEEEcCCCCCcHHH--HHHHHHHHHHhcC-CEEEEECCCCCCHHHHh
Confidence 567889999999875 3347888888889 99888888877766543
No 174
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=39.34 E-value=57 Score=31.14 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=43.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
++.+.+.|++...+.. --.. +.+-++..+++.|+++.+..+.......++.+.+...++|+||+++.
T Consensus 62 ~~~~~Igvi~~~~~~~-~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNE-YYSE-SLQTIQQDLKAAGYQMLVAEANSVQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp --CCEEEEEESCSSSH-HHHH-HHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CCCCEEEEEeCCCcCh-HHHH-HHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHHHhCCCCEEEEcch
Confidence 4456677776543322 1222 33567788888899998888877444455666666678999999876
No 175
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=39.02 E-value=1.4e+02 Score=28.77 Aligned_cols=78 Identities=8% Similarity=-0.030 Sum_probs=45.9
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec--CChhHHHHHHHH--hhcCCCceEEEEcCCChHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET--TQQLHAKEIVKV--LDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T--~~~~~a~~l~~~--~~~~~~d~IV~vGGDGtl~evi 183 (484)
..+|+.+|..+... -+.. ..+.++..|+++|+++..... ....+....+++ +...+.|+|++.+-......++
T Consensus 140 g~~~iaii~~~~~~--~g~~-~~~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~ 216 (391)
T 3eaf_A 140 GQGKLALAYDSKVA--YSRS-PIGAIKKAAPSLGLQVVGDYDLPLRATEADAERIAREMLAADPDYVWCGNTISSCSLLG 216 (391)
T ss_dssp CSEEEEEEECTTCH--HHHT-THHHHHHHTGGGTEEEEEEEECCTTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEEEecCCh--hHHH-HHHHHHHHHHHcCCceeeeeccCCCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHH
Confidence 35789998875222 2222 235677888889987644332 223355566666 6667888887644324445555
Q ss_pred HHHhc
Q 011517 184 NGLLE 188 (484)
Q Consensus 184 ngL~~ 188 (484)
..+.+
T Consensus 217 ~~~~~ 221 (391)
T 3eaf_A 217 RAMAK 221 (391)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 176
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=38.96 E-value=87 Score=24.80 Aligned_cols=66 Identities=12% Similarity=0.155 Sum_probs=34.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
..++.||....-..-. - -|-.+++.+|+..|++|+.+.......+.+.+++..-...=-.|.++|.
T Consensus 17 ~~~Vvvy~k~t~~~p~-C-p~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g~ 82 (109)
T 3ipz_A 17 SEKVVLFMKGTRDFPM-C-GFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGE 82 (109)
T ss_dssp SSSEEEEESBCSSSBS-S-HHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETTE
T ss_pred cCCEEEEEecCCCCCC-C-hhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence 4567787652100001 1 1556899999999999988765443344443343321111124555553
No 177
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=38.46 E-value=1.4e+02 Score=23.17 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=29.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~ 157 (484)
.+.++.|+.-|..+ |-++++++|++.+++|+.+.......+.+
T Consensus 14 ~~~~v~vy~~~~Cp-------~C~~ak~~L~~~~i~y~~idI~~~~~~~~ 56 (99)
T 3qmx_A 14 VSAKIEIYTWSTCP-------FCMRALALLKRKGVEFQEYCIDGDNEARE 56 (99)
T ss_dssp CCCCEEEEECTTCH-------HHHHHHHHHHHHTCCCEEEECTTCHHHHH
T ss_pred CCCCEEEEEcCCCh-------hHHHHHHHHHHCCCCCEEEEcCCCHHHHH
Confidence 35567777777654 44678889999999988776555444443
No 178
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=38.28 E-value=32 Score=31.64 Aligned_cols=44 Identities=25% Similarity=0.323 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
.|+++.+.+...++ .||.-||. |....+..|.++.. ...+|++|
T Consensus 29 ~A~~lg~~LA~~g~-~lV~GGg~~GlM~aa~~gA~~~G------G~~iGv~p 73 (216)
T 1ydh_A 29 AAIELGNELVKRKI-DLVYGGGSVGLMGLISRRVYEGG------LHVLGIIP 73 (216)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHHCCC-EEEECCCcccHhHHHHHHHHHcC------CcEEEEec
Confidence 45666666665444 56666676 88888888887653 57999999
No 179
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=38.28 E-value=53 Score=32.16 Aligned_cols=70 Identities=9% Similarity=0.069 Sum_probs=44.4
Q ss_pred CcEEEEEEcCCCCCcc-hhhchHHhHHHHHHhcCCeEEEEecCC----------hhHHHHHHHHhhcCCCceEEE-EcCC
Q 011517 109 PKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDANIQFTVQETTQ----------QLHAKEIVKVLDLSKYDGIVC-VSGD 176 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~-a~~~~~~~v~p~l~~ag~~~~v~~T~~----------~~~a~~l~~~~~~~~~d~IV~-vGGD 176 (484)
+.--.-|+.|.|+-.. ....+ +.....|+..|+++.+-.+-. ...|.++.+.+.....|+|+| .||+
T Consensus 11 ~GD~I~ivaPS~~~~~~~~~~~-~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rGG~ 89 (331)
T 4e5s_A 11 KGDEIRVISPSCSLSIVSTENR-RLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLGGY 89 (331)
T ss_dssp TTCEEEEECSSSCGGGSCHHHH-HHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCCCS
T ss_pred CcCEEEEEeCCCCccccCHHHH-HHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccccc
Confidence 3345677899988641 12235 466778999998877644322 223556666665567787776 5899
Q ss_pred ChH
Q 011517 177 GIL 179 (484)
Q Consensus 177 Gtl 179 (484)
|+.
T Consensus 90 g~~ 92 (331)
T 4e5s_A 90 NSN 92 (331)
T ss_dssp CGG
T ss_pred cHH
Confidence 963
No 180
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=38.19 E-value=86 Score=28.69 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=36.1
Q ss_pred CCcEEEEEEcCCCC-CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGG-KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG-~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
..+|+.|| |.+. .... .-+...+...|+..|+++.+ +....+.. +.+ .+.|+|++-| |-....+..|
T Consensus 30 ~~~~i~iI--~~a~~~~~~-~~~~~~~~~al~~lG~~~~~--v~~~~d~~---~~l--~~ad~I~lpG--G~~~~~~~~l 97 (229)
T 1fy2_A 30 GRRSAVFI--PFAGVTQTW-DEYTDKTAEVLAPLGVNVTG--IHRVADPL---AAI--EKAEIIIVGG--GNTFQLLKES 97 (229)
T ss_dssp TCCEEEEE--CTTCCSSCH-HHHHHHHHHHHGGGTCEEEE--TTSSSCHH---HHH--HHCSEEEECC--SCHHHHHHHH
T ss_pred CCCeEEEE--ECCCCCCCH-HHHHHHHHHHHHHCCCEEEE--EeccccHH---HHH--hcCCEEEECC--CcHHHHHHHH
Confidence 34566665 5553 2222 23456788889999976544 43222221 222 2357776666 4444555544
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
.+
T Consensus 98 ~~ 99 (229)
T 1fy2_A 98 RE 99 (229)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 181
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=37.53 E-value=61 Score=30.53 Aligned_cols=88 Identities=10% Similarity=0.098 Sum_probs=48.3
Q ss_pred CCcEEEEEEc-CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVN-PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiN-P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
+..++.+++. +.+.+.--...+ +-++..+++.|+++.+..+... ....+..+.+...++|+||++|.. ..+.+..
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~-~gi~~~~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~--~~~~~~~ 80 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAY-EGLLNIHSNLDVDVVLEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA--FAEYFST 80 (296)
T ss_dssp --CEEEEECCCC----CCTHHHH-HHHHHHHHHSCCEEEEECCCCSHHHHHHHHHHHHHTTCCEEEECSTH--HHHHHHT
T ss_pred CCcEEEEEECCCCCCCcHHHHHH-HHHHHHHHHhCCeEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh--HHHHHHH
Confidence 4567777774 222211112233 4667778888988877665443 344456667766789999988642 3333333
Q ss_pred HhcCcCcccccCCcEEEe
Q 011517 186 LLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiI 203 (484)
+... ..++|+.++
T Consensus 81 ~~~~-----~p~~p~v~i 93 (296)
T 2hqb_A 81 IHNQ-----YPDVHFVSF 93 (296)
T ss_dssp TTTS-----CTTSEEEEE
T ss_pred HHHH-----CCCCEEEEE
Confidence 3221 125677776
No 182
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=37.18 E-value=87 Score=29.88 Aligned_cols=79 Identities=9% Similarity=-0.062 Sum_probs=50.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE-ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ-ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~-~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
..+|+.+|..+...-+. . ..+.++..|+++|+++... ......+....++++...+.|+|++.+-|.....++..+
T Consensus 148 g~~~iaii~~~~~~~~~--~-~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 224 (366)
T 3td9_A 148 GAKRVVVFTDVEQDYSV--G-LSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQA 224 (366)
T ss_dssp CCCEEEEEEETTCHHHH--H-HHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCcHHH--H-HHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHH
Confidence 45789999754332222 2 2356778889999876433 222223344556666557899999988887777888877
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 225 ~~~ 227 (366)
T 3td9_A 225 RQL 227 (366)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 183
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.02 E-value=38 Score=32.59 Aligned_cols=63 Identities=13% Similarity=0.305 Sum_probs=39.9
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC-eEEEEecCChhHH--HHHHHHhhcCCCceEEEEcCCCh
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHA--KEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~-~~~v~~T~~~~~a--~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
.|++|| |.+... . ..|.+.....|+..|+ ++++.......++ .++++.+. +.|+|++.|||-+
T Consensus 57 ~~I~~I--ptAs~~-~-~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~ 122 (291)
T 3en0_A 57 AIIGII--PSASRE-P-LLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQL 122 (291)
T ss_dssp CEEEEE--CTTCSS-H-HHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHH
T ss_pred CeEEEE--eCCCCC-h-HHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHH
Confidence 455554 554432 2 2344577888999999 6777766554433 34444443 5799999999974
No 184
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=36.64 E-value=82 Score=30.52 Aligned_cols=111 Identities=14% Similarity=0.059 Sum_probs=64.7
Q ss_pred hhhcCCCcEEEEEEcCCC------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcC---CCce-EEE
Q 011517 103 IDSFGRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLS---KYDG-IVC 172 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~s------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~---~~d~-IV~ 172 (484)
++-..+++++.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++... .+|. |++
T Consensus 53 Y~m~~~~rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~f~~~dh~~~D~~vv~ 132 (310)
T 2nn3_C 53 YNMNHKHRGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFIQQTAEMDHSDADCLLVA 132 (310)
T ss_dssp CCCCSSBCCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHSSCGGGBSCEEEE
T ss_pred ccCCCCCcCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHHhccCCCCEEEEE
Confidence 333355778887777431 122233333468999999999999998877777777777776532 3553 333
Q ss_pred E----------cCCCh--HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 173 V----------SGDGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 173 v----------GGDGt--l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
+ |=||. +.++++-+-......-+-++-|-||-+=-||.+..
T Consensus 133 ilSHG~~g~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~d~ 185 (310)
T 2nn3_C 133 VLTAGELGMLYAKDTHYKPDNLWYYFTADKCPTLAGKPKLFFIQACQGDRLDG 185 (310)
T ss_dssp EEEEEETTEEECSSCEECTHHHHGGGSTTTCGGGTTSCEEEEEEEECCCCCCC
T ss_pred EeCCCCCCEEEecCCcEEHHHHHHHhccccChhhcCCceEEEEecccCCcccc
Confidence 2 33553 34444433222111122356788888766676654
No 185
>3sir_A Caspase; hydrolase; 2.68A {Drosophila melanogaster} PDB: 3sip_A
Probab=36.24 E-value=60 Score=30.52 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=40.4
Q ss_pred cCCCcEEEEEEcCCC------CCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCce
Q 011517 106 FGRPKRLYIFVNPFG------GKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG 169 (484)
Q Consensus 106 ~~~~~r~lviiNP~s------G~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~ 169 (484)
..+|+++.+|||-.. ..+.+...=.+.++..|+..|+++++..=-...+..+.++++.. .++|.
T Consensus 16 ~~~~rg~aLIInn~~f~~~~l~~R~G~~~D~~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~ 88 (259)
T 3sir_A 16 RHKNRGMALIFNHEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEYSASQNHSDSDC 88 (259)
T ss_dssp CSSEEEEEEEEEECCC-----------CCHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHHHHTSCCTTEEE
T ss_pred CCCCccEEEEEeccccCCCCCCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHhhccCCCE
Confidence 356777777776532 11122222346899999999999998887777777777777653 34553
No 186
>2f48_A Diphosphate--fructose-6-phosphate 1-phosphotransf; phosphotransfer, transferase; HET: FBP; 2.11A {Borrelia burgdorferi} SCOP: c.89.1.1 PDB: 1kzh_A*
Probab=36.19 E-value=22 Score=37.53 Aligned_cols=104 Identities=12% Similarity=0.081 Sum_probs=58.3
Q ss_pred CcEEEEEEcCCCCCcch--hhchHHhHHHHHHhcCCe-E--EEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIA--SKIFLDDVKPLLEDANIQ-F--TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a--~~~~~~~v~p~l~~ag~~-~--~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
-.+++-|.|=..|=-+. ..+-.+.+..++..-|.. . .-..-.....-.++++.+...+.|++|++|||||+.-+.
T Consensus 104 ~~~v~Gi~~G~~GL~~~~~~~L~~~~v~~i~~~GGstiLGssR~~~~~~e~~~~~~~~l~~~~Id~LvvIGGdgS~~~A~ 183 (555)
T 2f48_A 104 NSKLFGFKGGPLGLLENDKIELTESLINSYRNTGGFDIVSSGRTKIETEEHYNKALFVAKENNLNAIIIIGGDDSNTNAA 183 (555)
T ss_dssp TCEEEEETTTTHHHHTTCEEEECHHHHHHHTTCCSSTTTCCBCCCCCSHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHH
T ss_pred CCEEEEEecChHHhcCCCEEECCHHHHHHHHhCCCCcCCCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcHHHHHH
Confidence 35677776655442211 112123566666655521 0 000011233445666667667899999999999976432
Q ss_pred HHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 184 NGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.|.+.- ......+++--||.==-||++..
T Consensus 184 -~L~e~~-~~~~~~i~vIGiPkTIDNDl~~t 212 (555)
T 2f48_A 184 -ILAEYF-KKNGENIQVIGVPKTIDADLRND 212 (555)
T ss_dssp -HHHHHH-HHTTCCCEEEEEEEETTCCCCCS
T ss_pred -HHHHHH-HHhCCCCcEEEeccccCCCCCCC
Confidence 232210 01124689999999889999743
No 187
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=36.09 E-value=1.5e+02 Score=27.04 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=42.0
Q ss_pred HhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+..+... ....+..+.+...+.|+||+.+.|.. +.+.+..+.+. ++|+-.+
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~ 88 (283)
T 2ioy_A 21 NGAEEKAKELGYKIIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSK-------NIPVITI 88 (283)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHT-------TCCEEEE
T ss_pred HHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHC-------CCeEEEe
Confidence 4567777888988877665432 22334556665678999999887653 23555555443 5777655
No 188
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=35.86 E-value=1.2e+02 Score=26.06 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=37.1
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~ 159 (484)
++..|.|+++|-||.. ..-.+.-.|...|.++-++....++....+.
T Consensus 2 ~vi~v~s~kgG~GKTt--~a~~la~~la~~g~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTT--AVINIATALSRSGYNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp EEEEECCSSTTSSHHH--HHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred eEEEEEeCCCCccHHH--HHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 6788999999999875 3347888888899888888887777766543
No 189
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=35.71 E-value=25 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.462 Sum_probs=22.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++++.|+++|+..+..
T Consensus 81 r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 81 RTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999988754
No 190
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=35.70 E-value=12 Score=33.20 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=40.2
Q ss_pred HHHHHHhcCCeEEEEecCCh------hH---HHHHHHHhhcCCCceEEEEcCCChH--------HHHHHHHhcCcCcccc
Q 011517 133 VKPLLEDANIQFTVQETTQQ------LH---AKEIVKVLDLSKYDGIVCVSGDGIL--------VEVVNGLLEREDWNDA 195 (484)
Q Consensus 133 v~p~l~~ag~~~~v~~T~~~------~~---a~~l~~~~~~~~~d~IV~vGGDGtl--------~evingL~~~~~~~~~ 195 (484)
...+|+++|+++++.-++.. +. +.....+++..+||.|++.||-|+- .+.+....++
T Consensus 27 p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l~~~~~~~~~l~~~~~~------ 100 (177)
T 4hcj_A 27 SKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITLWDDWRTQGLAKLFLDN------ 100 (177)
T ss_dssp HHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGGTTCHHHHHHHHHHHHT------
T ss_pred HHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHHhhCHHHHHHHHHHHHh------
Confidence 34567778877776543321 10 0011234445679999999998863 3333333332
Q ss_pred cCCcEEEecCCCchhhhh
Q 011517 196 IKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 196 ~~~pigiIP~GSgN~~A~ 213 (484)
.-+|+-|=.|. -.|++
T Consensus 101 -~k~iaaIC~g~-~~La~ 116 (177)
T 4hcj_A 101 -QKIVAGIGSGV-VIMAN 116 (177)
T ss_dssp -TCEEEEETTHH-HHHHH
T ss_pred -CCEEEEecccH-HHHHH
Confidence 45777775553 34444
No 191
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=35.06 E-value=54 Score=30.03 Aligned_cols=69 Identities=10% Similarity=0.208 Sum_probs=44.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+++.|++.-.+.. --..+ .+-++..+++.|+++.+..+.......++.+.+...++|+|| ++.+..
T Consensus 3 ~~~~~Igvi~~~~~~~-~~~~~-~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNP-WFIDL-IQSLSDVLTPKGYRLSVIDSLTSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp -CCCEEEEEESCTTSG-GGHHH-HHHHHHHHGGGTCEEEEECSSSSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred CccCEEEEEeCCCCCh-HHHHH-HHHHHHHHHHCCCEEEEEeCCCchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 3556677776443222 22223 356777888889998888776443344566666667899999 888765
No 192
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=34.95 E-value=1.4e+02 Score=27.31 Aligned_cols=66 Identities=12% Similarity=0.147 Sum_probs=42.2
Q ss_pred HhHHHHHHhcCCeEEEEe--cCC-hhHHHHHHHHhhcCCCceEEEEcCCCh-HHHHHHHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQFTVQE--TTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI-LVEVVNGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~--T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt-l~evingL~~~~~~~~~~~~pigiI 203 (484)
+-++..+++.|+++.+.. +.. ...-.+..+.+...+.|+||+++.|.. +.+.++.+.+. .+|+-++
T Consensus 21 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~-------~iPvV~~ 90 (288)
T 1gud_A 21 KGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKK-------GIYLVNL 90 (288)
T ss_dssp HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHT-------TCEEEEE
T ss_pred HHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC-------CCeEEEE
Confidence 456777788898887766 433 222234556665578999999887754 33556655443 5777666
No 193
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=34.93 E-value=71 Score=27.78 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=53.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc------CCCceEEEEc----CCCh-
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL------SKYDGIVCVS----GDGI- 178 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~------~~~d~IV~vG----GDGt- 178 (484)
.|+.|+.-.+-- .-..+.. +-....|..+|.+++++.....-+.--.++.+.. ++||+||+.| |+-.
T Consensus 13 ~ri~IV~arfn~-~I~~~Ll-~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~H 90 (157)
T 2i0f_A 13 PHLLIVEARFYD-DLADALL-DGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYH 90 (157)
T ss_dssp CEEEEEEECSSH-HHHHHHH-HHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSST
T ss_pred cEEEEEEEeCcH-HHHHHHH-HHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchH
Confidence 467776643321 1111222 3455566777877888777776666555555542 5799999988 4432
Q ss_pred ----HHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 179 ----LVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 179 ----l~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
-+++..||++-.- +....+-.|+|-..
T Consensus 91 fd~Va~~v~~gl~~vsl-~~~vPV~~GVLT~~ 121 (157)
T 2i0f_A 91 FDIVSNESCRALTDLSV-EESIAIGNGILTVE 121 (157)
T ss_dssp THHHHHHHHHHHHHHHH-HTTCCEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHh-hcCCCEEEEEeCCC
Confidence 4577778776421 11223445666555
No 194
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=34.89 E-value=18 Score=30.01 Aligned_cols=27 Identities=26% Similarity=0.586 Sum_probs=23.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.|.|...++++.+.|+++|+..+...
T Consensus 100 ~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 100 HEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999999999999887643
No 195
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=34.87 E-value=26 Score=28.16 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=23.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++++.|+++|+..+...
T Consensus 77 ~~y~f~A~s~ee~~~Wi~ai~~~~~~~ 103 (112)
T 3cxb_B 77 PCLELSAESEAEMAEWMQHLCQAVSKG 103 (112)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHhhcc
Confidence 478899999999999999999887653
No 196
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=34.74 E-value=2.8e+02 Score=26.39 Aligned_cols=79 Identities=18% Similarity=0.194 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhhhh----cCC-CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDS----FGR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~----~~~-~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (484)
+.++...+.+++.+.. ..+ |+=..|++ |...|.+.|.+.-....++.|+++..+. +..+.+..+..++
T Consensus 12 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 87 (286)
T 4a5o_A 12 AIAANLRQQIAQRVTERRQQGLRVPGLAVILV----GTDPASQVYVAHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDR 87 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555566666555432 234 54445555 4556777898888999999999887654 3456666777777
Q ss_pred hhcC-CCceEEE
Q 011517 162 LDLS-KYDGIVC 172 (484)
Q Consensus 162 ~~~~-~~d~IV~ 172 (484)
++.+ +.|+|++
T Consensus 88 lN~d~~v~GIlV 99 (286)
T 4a5o_A 88 LNDDPAIDGILV 99 (286)
T ss_dssp HHTCTTCCEEEE
T ss_pred HhCCCCCCEEEE
Confidence 7654 6777775
No 197
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=34.27 E-value=81 Score=29.98 Aligned_cols=28 Identities=7% Similarity=0.180 Sum_probs=22.5
Q ss_pred CCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 166 KYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 166 ~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
..|.+|+.|| +|+.|++- ...|.-+||.
T Consensus 225 ~aDlvI~~gG-~T~~E~~~-----------~g~P~i~ip~ 252 (282)
T 3hbm_A 225 ESNKLIISAS-SLVNEALL-----------LKANFKAICY 252 (282)
T ss_dssp TEEEEEEESS-HHHHHHHH-----------TTCCEEEECC
T ss_pred HCCEEEECCc-HHHHHHHH-----------cCCCEEEEeC
Confidence 4689999999 99999873 2678888885
No 198
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=34.22 E-value=2.3e+02 Score=27.54 Aligned_cols=77 Identities=10% Similarity=0.150 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceE
Q 011517 91 SKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGI 170 (484)
Q Consensus 91 ~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~I 170 (484)
..+.+.+...+++.. ...++++|++-. ..|...++ .+.+...+...|++++++..... ...++..++. ++|.|
T Consensus 235 ~~~~~~~~~~~~~~~-~~~~kv~i~y~S--~~Gnt~~l-A~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~~~--~~d~i 307 (402)
T 1e5d_A 235 QCTFAVQKYVEYAEQ-KPTNKVVIFYDS--MWHSTEKM-ARVLAESFRDEGCTVKLMWCKAC-HHSQIMSEIS--DAGAV 307 (402)
T ss_dssp HHHHHHHHHHHHHHC-CCCSEEEEEECC--SSSHHHHH-HHHHHHHHHHTTCEEEEEETTTS-CHHHHHHHHH--TCSEE
T ss_pred CHHHHHHHHHHHhcC-CCCCcEEEEEEC--CChhHHHH-HHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH--HCCEE
Confidence 344444444444433 224678777744 44555543 35677788888888877665432 3445555543 68888
Q ss_pred EEEc
Q 011517 171 VCVS 174 (484)
Q Consensus 171 V~vG 174 (484)
|++.
T Consensus 308 i~gs 311 (402)
T 1e5d_A 308 IVGS 311 (402)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 8875
No 199
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding, fructose-6-phosphate bindi magnesium binding, citrate binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Probab=34.14 E-value=21 Score=39.97 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHhhcCCCceEEEEcCCChHHHHHHHHh-----------c-----CcCcccccCCcEEEecCCCchhhhhh
Q 011517 157 EIVKVLDLSKYDGIVCVSGDGILVEVVNGLL-----------E-----REDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 157 ~l~~~~~~~~~d~IV~vGGDGtl~evingL~-----------~-----~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.+++.+...+.|.+|++|||||+.-+- -|. + ....+....+++--||.==-||++..
T Consensus 267 ~~~~~L~~~gId~LvvIGGDGS~~gA~-~l~~e~~~l~~eL~~~gkis~e~~~~~~~i~VVGIPkTIDNDl~gT 339 (941)
T 3opy_B 267 KACKNMIDMGIDALIVCGGDGSLTGAD-RFRSEWPSLIEELLQTEQISQQQFNTHQNLNICGAVGSIDNDMSST 339 (941)
T ss_dssp HHHHHHHHHTCCEEEEEECHHHHHHHH-HHHHTCCCCCCC--------CHHHHHTCSCEEEEEEEESSCCCSSC
T ss_pred HHHHHHHHcCCCEEEEeCCChhHHHHH-HHHHhhhHHHHHHHhhccccHHHHhcCCCCcEEEEeecccCCCCCC
Confidence 345555556789999999999998542 221 1 00111123688888998888998853
No 200
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=34.08 E-value=36 Score=31.27 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=31.6
Q ss_pred HHHHHHHHhhcCCCceEEEEcCC-ChHHHHHHHHhcCcCcccccCCcEEEecCC
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGD-GILVEVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGD-Gtl~evingL~~~~~~~~~~~~pigiIP~G 206 (484)
.|+++++.+...++ .||.-||. |..-.+..|.++.. ...+|+||..
T Consensus 33 ~A~~lg~~LA~~G~-~vVsGGg~~GiM~aa~~gAl~~G------G~tiGVlP~~ 79 (215)
T 2a33_A 33 AAVDLGNELVSRNI-DLVYGGGSIGLMGLVSQAVHDGG------RHVIGIIPKT 79 (215)
T ss_dssp HHHHHHHHHHHTTC-EEEECCCSSHHHHHHHHHHHHTT------CCEEEEEESS
T ss_pred HHHHHHHHHHHCCC-EEEECCChhhHhHHHHHHHHHcC------CcEEEEcchH
Confidence 45666777665443 45555665 88888888887653 5789999864
No 201
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.05 E-value=29 Score=27.46 Aligned_cols=26 Identities=12% Similarity=0.417 Sum_probs=22.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 85 r~~~l~a~s~~e~~~Wi~al~~~~~~ 110 (117)
T 2d9y_A 85 RTYFFSAESPEEQEAWIQAMGEAARV 110 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHhh
Confidence 56889999999999999999988754
No 202
>2vvr_A Ribose-5-phosphate isomerase B; RPIB, carbohydrate metabolism, pentose phosphate pathway; 2.10A {Escherichia coli} PDB: 1nn4_A
Probab=33.65 E-value=1.2e+02 Score=26.08 Aligned_cols=68 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|-+-++|-. +.+.++..|++.|+++.-+=| .|+.-+..+++.+..+
T Consensus 4 IaigsDhaG~~-----lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g--------------------- 57 (149)
T 2vvr_A 4 IAFGCDHVGFI-----LKHEIVAHLVERGVEVIDKGTWSSERTDYPHYASQVALAVAGG--------------------- 57 (149)
T ss_dssp EEEEECTTGGG-----GHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT---------------------
T ss_pred EEEEeCchhHH-----HHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcC---------------------
Confidence 35677777742 446789999999987755523 2444444444444322
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 58 ----------~~d~GIliCGTGiG~siaAN 77 (149)
T 2vvr_A 58 ----------EVDGGILICGTGVGISIAAN 77 (149)
T ss_dssp ----------SSSEEEEEESSSHHHHHHHH
T ss_pred ----------CCceEEEEeCCcHHHHHHHh
Confidence 34567888888888877654
No 203
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=33.53 E-value=1.9e+02 Score=25.29 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=38.4
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcC-CCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..+...|++.|+++.. +.........+..+++... ++|.||+.||=|. ..|++..++.
T Consensus 43 ~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcchHHHHHHHhc
Confidence 3688899999987643 3455555555555554332 4999999999553 5566665544
No 204
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=33.48 E-value=43 Score=30.25 Aligned_cols=46 Identities=22% Similarity=0.300 Sum_probs=32.1
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
..|+++++.+...++ .||.-|+-|..-.+..|.++.. ...+|+||.
T Consensus 45 ~~A~~lg~~LA~~G~-~vVsGg~~GiM~aa~~gAl~~G------G~~iGVlP~ 90 (195)
T 1rcu_A 45 DICLELGRTLAKKGY-LVFNGGRDGVMELVSQGVREAG------GTVVGILPD 90 (195)
T ss_dssp HHHHHHHHHHHHTTC-EEEECCSSHHHHHHHHHHHHTT------CCEEEEEST
T ss_pred HHHHHHHHHHHHCCC-EEEeCCHHHHHHHHHHHHHHcC------CcEEEEeCC
Confidence 356677777776555 4556667777777777777652 578999997
No 205
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=33.47 E-value=1.5e+02 Score=27.99 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=49.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe--cCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE--TTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~--T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|... ... +.. ..+.++..|++.|+++.... .....+....++++...+.|.|++.+.|.....+++.
T Consensus 138 g~~~ia~i~~~-~~~--g~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 213 (368)
T 4eyg_A 138 GIKKVATLTSD-YAP--GND-ALAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQ 213 (368)
T ss_dssp TCCEEEEEEES-SHH--HHH-HHHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHH
T ss_pred CCCEEEEEecC-chH--hHH-HHHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHH
Confidence 35788888732 222 222 23567778888998764322 1222334445555555578999998888888899988
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 214 ~~~~ 217 (368)
T 4eyg_A 214 FAER 217 (368)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8765
No 206
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=33.37 E-value=1.6e+02 Score=24.63 Aligned_cols=69 Identities=19% Similarity=0.185 Sum_probs=41.8
Q ss_pred HhHHHHHHhcCCe-EEEEecCChhHHHHHHHHhhcCCCceEEEEc-CCChHHHHH-----HHHhcCcCcccccCCcEEEe
Q 011517 131 DDVKPLLEDANIQ-FTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGILVEVV-----NGLLEREDWNDAIKVPLGVV 203 (484)
Q Consensus 131 ~~v~p~l~~ag~~-~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG-GDGtl~evi-----ngL~~~~~~~~~~~~pigiI 203 (484)
+++...+...|++ ++...... .-+.++++.+...++|.||+-. |-+.+.+.+ +.++.. ..+|+-++
T Consensus 84 ~~~~~~~~~~gv~~v~~~v~~G-~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~------a~~PVlvV 156 (163)
T 1tq8_A 84 HDAKERAHNAGAKNVEERPIVG-APVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRR------AKVDVLIV 156 (163)
T ss_dssp HHHHHHHHTTTCCEEEEEEECS-SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHH------TTCEEEEE
T ss_pred HHHHHHHHHcCCCeEEEEEecC-CHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHh------CCCCEEEE
Confidence 3555666777887 76554433 3456677666656788776643 455565543 334433 26899998
Q ss_pred cCC
Q 011517 204 PAG 206 (484)
Q Consensus 204 P~G 206 (484)
|..
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 853
No 207
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=33.33 E-value=2e+02 Score=28.21 Aligned_cols=61 Identities=7% Similarity=0.015 Sum_probs=39.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+.++++|++- |..|...++- +.+...+.+.|++++++..... ...++.+++. ++|.||++.
T Consensus 255 ~~~kv~iiy~--S~~GnT~~la-~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~l~--~~D~iiigs 315 (414)
T 2q9u_A 255 CQKKVTVVLD--SMYGTTHRMA-LALLDGARSTGCETVLLEMTSS-DITKVALHTY--DSGAVAFAS 315 (414)
T ss_dssp CCSEEEEEEC--CSSSHHHHHH-HHHHHHHHHTTCEEEEEEGGGC-CHHHHHHHHH--TCSEEEEEC
T ss_pred cCCeEEEEEE--CCCchHHHHH-HHHHHHHHhCCCeEEEEEcCcC-CHHHHHHHHH--hCCEEEEEc
Confidence 3467877774 4455666544 6788888888888877654332 2334444543 689888874
No 208
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=33.15 E-value=55 Score=30.11 Aligned_cols=89 Identities=11% Similarity=0.119 Sum_probs=51.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
++.+++.|++.......--.+ +.+-++..+++.|+++.+..+.. .....++.+.+...++|+||+++-|..-.++. .
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~-~ 86 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISR-FLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANISNYDLEYL-N 86 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHH-HHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCCHHHHHHH-H
T ss_pred CCCceEEEEeccccchHHHHH-HHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCCcccHHHH-H
Confidence 456778888862222222222 33577778888899887765432 22223445555567899999998876543333 2
Q ss_pred HhcCcCcccccCCcEEEec
Q 011517 186 LLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 186 L~~~~~~~~~~~~pigiIP 204 (484)
+.. .++|+-.+-
T Consensus 87 ~~~-------~~iPvV~~~ 98 (289)
T 3g85_A 87 KAS-------LTLPIILFN 98 (289)
T ss_dssp HCC-------CSSCEEEES
T ss_pred hcc-------CCCCEEEEC
Confidence 222 257776664
No 209
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=33.09 E-value=34 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=23.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 87 r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 87 RTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 468898999999999999999987643
No 210
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=32.70 E-value=57 Score=27.47 Aligned_cols=70 Identities=6% Similarity=0.070 Sum_probs=43.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
.+|..+.|| |.+- ...-|.+.|...|..+|+.+++.........-...++....++-.++++|- .|+-++
T Consensus 6 ~~P~Qv~Il--pVs~---~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~kIR~a~~~kvPy~lVVG~----kE~e~~ 75 (130)
T 1v95_A 6 SGPVDCSVI--VVNK---QTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQALEDVSRGGSPFAIVITQ----QHQIHR 75 (130)
T ss_dssp CCCCTEEEE--ESSS---GGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHHHHHHHHHTCSEEEEECH----HHHHHT
T ss_pred CCCCeEEEE--EeCc---chHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHHHHHHHHcCCCEEEEEec----hHHhcC
Confidence 455555444 3332 233588999999999999999876521233334455555567777888773 355554
No 211
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=32.66 E-value=2.9e+02 Score=26.27 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhhhc----C-CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHHH
Q 011517 90 DSKRLWCEKLRDFIDSF----G-RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKV 161 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~-~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~~ 161 (484)
+.++...+.+++.+..+ + +|+=..|++ |...|.+.|.+.-....++.|+++..+. +..+.+..+..++
T Consensus 11 ~ia~~i~~~~~~~v~~l~~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~ 86 (285)
T 3l07_A 11 SLSKDLKERLATQVQEYKHHTAITPKLVAIIV----GNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQ 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCceEEEEEE----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45555666665554322 3 454444555 5556778898888999999999887665 3455666777777
Q ss_pred hhcC-CCceEEE
Q 011517 162 LDLS-KYDGIVC 172 (484)
Q Consensus 162 ~~~~-~~d~IV~ 172 (484)
++.+ +.|+|++
T Consensus 87 lN~d~~v~GIlv 98 (285)
T 3l07_A 87 LNNDSSVHAILV 98 (285)
T ss_dssp HHTCTTCCEEEE
T ss_pred HhCCCCCcEEEE
Confidence 7653 5677765
No 212
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=32.66 E-value=1.8e+02 Score=26.61 Aligned_cols=83 Identities=7% Similarity=0.125 Sum_probs=54.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhc
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLE 188 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~ 188 (484)
.+++.|+-.+.--. -+ +.+..+| +++++.+.-....++.+.++++..++++.|| ||++..+....+
T Consensus 106 ~~kIavVg~~~~~~-----~~-~~i~~ll---~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVV---G~~~~~~~A~~~-- 171 (225)
T 2pju_A 106 TSSIGVVTYQETIP-----AL-VAFQKTF---NLRLDQRSYITEEDARGQINELKANGTEAVV---GAGLITDLAEEA-- 171 (225)
T ss_dssp TSCEEEEEESSCCH-----HH-HHHHHHH---TCCEEEEEESSHHHHHHHHHHHHHTTCCEEE---ESHHHHHHHHHT--
T ss_pred CCcEEEEeCchhhh-----HH-HHHHHHh---CCceEEEEeCCHHHHHHHHHHHHHCCCCEEE---CCHHHHHHHHHc--
Confidence 35777775543211 11 3445555 6788888889999999999999888898876 588877766543
Q ss_pred CcCcccccCCcEEEecCCCchhhhhhc
Q 011517 189 REDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 189 ~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
.++--+|- |...+-.++
T Consensus 172 --------Gl~~vlI~--s~eSI~~Ai 188 (225)
T 2pju_A 172 --------GMTGIFIY--SAATVRQAF 188 (225)
T ss_dssp --------TSEEEESS--CHHHHHHHH
T ss_pred --------CCcEEEEC--CHHHHHHHH
Confidence 44544454 356666555
No 213
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=32.55 E-value=2.8e+02 Score=26.33 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHHHhhc-
Q 011517 89 EDSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVKVLDL- 164 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~~~~~- 164 (484)
.+.++...+.+++.+...++...+.+|. -|...|.+.|.+.-....++.|+ +..+. +..+.+..+..++++.
T Consensus 7 k~~a~~i~~~~~~~v~~l~~~P~Lavil---vg~dpaS~~Yv~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D 82 (276)
T 3ngx_A 7 EEIAEKKAENLHGIIERSGLEPSLKLIQ---IGDNEAASIYARAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKD 82 (276)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEEE---ESCCHHHHHHHHHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEEEE---eCCCHHHHHHHHHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456677777777766655544555443 25556777898888899999999 66543 3345566666677754
Q ss_pred CCCceEEE
Q 011517 165 SKYDGIVC 172 (484)
Q Consensus 165 ~~~d~IV~ 172 (484)
.+.|+|++
T Consensus 83 ~~v~GIlv 90 (276)
T 3ngx_A 83 PQINGIMI 90 (276)
T ss_dssp TTCCEEEE
T ss_pred CCCcEEEE
Confidence 35777775
No 214
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=32.53 E-value=33 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 478899999999999999999886543
No 215
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=32.50 E-value=2.4e+02 Score=27.05 Aligned_cols=76 Identities=7% Similarity=-0.011 Sum_probs=45.8
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecC--ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETT--QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~--~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evin 184 (484)
.+|+.+|..+.. -+... .+..+..|+++|+++... ... ...+....++++...+.|+|++.+.|.....++.
T Consensus 140 ~~~ia~i~~~~~---~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~ 215 (385)
T 1pea_A 140 GERVVFIGSDYI---YPRES-NHVMRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYR 215 (385)
T ss_dssp CSEEEEEEESSH---HHHHH-HHHHHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHH
T ss_pred CcEEEEEeCCCh---HHHHH-HHHHHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHH
Confidence 478888875321 12222 246677888899876432 222 3344555666664457899888665556667777
Q ss_pred HHhc
Q 011517 185 GLLE 188 (484)
Q Consensus 185 gL~~ 188 (484)
.+.+
T Consensus 216 ~~~~ 219 (385)
T 1pea_A 216 AIAR 219 (385)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 216
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=32.27 E-value=91 Score=28.60 Aligned_cols=69 Identities=12% Similarity=0.245 Sum_probs=41.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+++.|++ |. ...--.. +.+-++..+++.|+++.+..+.. .....++.+.+...++|+||+.+.+..
T Consensus 6 ~~~~~Igvi~-~~-~~~~~~~-~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIV-PD-QNPFFTE-VLTEISHECQKHHLHVAVASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEE-SS-CCHHHHH-HHHHHHHHHGGGTCEEEEEECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEE-CC-CCchHHH-HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 3445566666 43 2111122 23456677777898887776643 233345666666678999999988764
No 217
>2uyg_A 3-dehydroquinate dehydratase; typeii 3-dehydroquinase, lyase; 2.2A {Thermus thermophilus}
Probab=32.26 E-value=1.4e+02 Score=25.77 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=35.1
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++....+.|++++.+.+.+.++..+..++...+++|+||+
T Consensus 29 i~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~~dgiII 72 (149)
T 2uyg_A 29 LEALCEAWGAELGLGVVFRQTNYEGQLIEWVQQAHQEGFLAIVL 72 (149)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTTTTTCSEEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhccCCeeEEEE
Confidence 34566777777899999999999999988888875444888885
No 218
>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*
Probab=32.21 E-value=2.3e+02 Score=27.53 Aligned_cols=80 Identities=9% Similarity=0.179 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhc---C--C-CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh
Q 011517 90 DSKRLWCEKLRDFIDSF---G--R-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD 163 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~--~-~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~ 163 (484)
..++.+.+.+++.+... + . |+=..|++ |...|.+.|.+.-....++.|+++..+.-....+..+..++++
T Consensus 12 ~ia~~i~~~~~~~v~~l~~~~~~~~P~Lavilv----g~dpas~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN 87 (320)
T 1edz_A 12 KVAETFNTEIINNVEEYKKTHNGQGPLLVGFLA----NNDPAAKMYATWTQKTSESMGFRYDLRVIEDKDFLEEAIIQAN 87 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEC----CCCHHHHHHHHHHHHHHHHHTCEEEEEECSSGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEEE----CCchhHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHc
Confidence 45666666666654322 2 3 44334444 5556778898888899999999998876655544666777776
Q ss_pred c-CCCceEEEE
Q 011517 164 L-SKYDGIVCV 173 (484)
Q Consensus 164 ~-~~~d~IV~v 173 (484)
. ...|+|++-
T Consensus 88 ~d~~v~GIlvq 98 (320)
T 1edz_A 88 GDDSVNGIMVY 98 (320)
T ss_dssp HCTTCCEEEEC
T ss_pred CCCCCCEEEEe
Confidence 4 357888763
No 219
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=32.16 E-value=1.1e+02 Score=26.67 Aligned_cols=58 Identities=22% Similarity=0.343 Sum_probs=37.6
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHH-hhcCCCceEEEEcCCC-----hHHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKV-LDLSKYDGIVCVSGDG-----ILVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~-~~~~~~d~IV~vGGDG-----tl~evingL~~ 188 (484)
..+...|.+.|+++.. +.........+..++ .+..++|.|++.||=| ...|++..++.
T Consensus 43 ~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~~~D~t~ea~~~~~~ 108 (178)
T 3iwt_A 43 DIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYSPTDITVETIRKLFD 108 (178)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSSTTCCHHHHHGGGCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccCCCCchHHHHHHhhh
Confidence 3688899999988643 334444444444443 3456799999999977 34455554443
No 220
>3op6_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 2.00A {Legionella pneumophila subsp}
Probab=32.11 E-value=37 Score=29.01 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=33.1
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCC-------------ceEEEEcCCChHH
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKY-------------DGIVCVSGDGILV 180 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~-------------d~IV~vGGDGtl~ 180 (484)
+.+..+|+++|++|+++.+.....+.+.++.+..... -.++++-||--++
T Consensus 5 ~~v~~~L~~~~i~~~~~~~~~~~t~~~~a~~lg~~~~~~~Ktlv~~~~~~~~lvvv~gd~~ld 67 (152)
T 3op6_A 5 KKLKQFLDSHKIKYLSIAHSPAYTAQEIAASAHVSGKQLAKTVIIKMDGRLAMVVLPASDHIT 67 (152)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTCCHHHHC----CCSSCCEEEEEEEETTEEEEEEEETTCCCC
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCHHHHHHHcCCChhheEEEEEEEECCeEEEEEECCCCeEC
Confidence 4788999999999999888776666676665543211 1456677777666
No 221
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=32.04 E-value=2.5e+02 Score=26.38 Aligned_cols=77 Identities=6% Similarity=-0.063 Sum_probs=45.6
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCC-hHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-ILVEVVN 184 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG-tl~evin 184 (484)
..+|+.+|. +... .+.... +..+..|+++|+++... ......+....++++...+.|+|+++ +|+ ....++.
T Consensus 138 g~~~ia~i~-~~~~--~~~~~~-~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~~~d~i~~~-~~~~~a~~~~~ 212 (358)
T 3hut_A 138 GFTSVAVIG-VTTD--WGLSSA-QAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIEDEAPQAIYLA-MAYEDAAPFLR 212 (358)
T ss_dssp TCCEEEEEE-ESSH--HHHHHH-HHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHHHHCCSEEEEE-SCHHHHHHHHH
T ss_pred CCCEEEEEe-cCcH--HHHHHH-HHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHHhcCCCEEEEc-cCchHHHHHHH
Confidence 457888886 3222 222223 56778889999876432 22222333445555544578887776 555 7777888
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.+.+.
T Consensus 213 ~~~~~ 217 (358)
T 3hut_A 213 ALRAR 217 (358)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87655
No 222
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=31.42 E-value=1.6e+02 Score=22.80 Aligned_cols=34 Identities=12% Similarity=0.402 Sum_probs=23.7
Q ss_pred EEEEEEc-----CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC
Q 011517 111 RLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (484)
Q Consensus 111 r~lviiN-----P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~ 151 (484)
++.|+.. |..+ +-+.++++|+..++++..+....
T Consensus 18 ~vvvf~~g~~~~~~C~-------~C~~~~~~L~~~~i~~~~vdi~~ 56 (105)
T 2yan_A 18 SVMLFMKGNKQEAKCG-------FSKQILEILNSTGVEYETFDILE 56 (105)
T ss_dssp SEEEEESBCSSSBCTT-------HHHHHHHHHHHHTCCCEEEEGGG
T ss_pred CEEEEEecCCCCCCCc-------cHHHHHHHHHHCCCCeEEEECCC
Confidence 4777776 4433 34688899999999987665543
No 223
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=31.24 E-value=49 Score=29.97 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=31.2
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
|...+...|+..|+++.+..... .+..+..+.+. +.|+|++-||+= ...+..|.
T Consensus 45 ~~~s~~~a~~~lG~~v~~~~i~~-~~~~~~~~~l~--~ad~I~l~GG~~--~~l~~~L~ 98 (206)
T 3l4e_A 45 YVEAGKKALESLGLLVEELDIAT-ESLGEITTKLR--KNDFIYVTGGNT--FFLLQELK 98 (206)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTT-SCHHHHHHHHH--HSSEEEECCSCH--HHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEecC-CChHHHHHHHH--hCCEEEECCCCH--HHHHHHHH
Confidence 55688999999999776643222 12333334443 468888755443 34444443
No 224
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=31.23 E-value=36 Score=27.24 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=23.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 122 (127)
T 1fgy_A 96 VVYRISAPSPEEKEEWMKSIKASISRD 122 (127)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred eEEEEECCCHHHHHHHHHHHHHHhccC
Confidence 578899999999999999999987643
No 225
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=31.15 E-value=1e+02 Score=26.20 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=36.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+++|++=.. .|...++ .+.+...|...|++++++..... +..++..++. +||.||+..
T Consensus 2 kv~IvY~S~--tGnT~~~-A~~ia~~l~~~g~~v~~~~~~~~-~~~~~~~~~~--~~d~ii~Gs 59 (161)
T 3hly_A 2 SVLIGYLSD--YGYSDRL-SQAIGRGLVKTGVAVEMVDLRAV-DPQELIEAVS--SARGIVLGT 59 (161)
T ss_dssp CEEEEECTT--STTHHHH-HHHHHHHHHHTTCCEEEEETTTC-CHHHHHHHHH--HCSEEEEEC
T ss_pred EEEEEEECC--ChHHHHH-HHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHHH--hCCEEEEEc
Confidence 466666433 4455554 46888888889998887765442 3345554443 578877654
No 226
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=30.98 E-value=1.7e+02 Score=27.82 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=46.0
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEE--EEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|.. ... -+.. ..+.++..|+++|+++. ........+....++++...+.|.|++++-+.....++..
T Consensus 158 g~~~ia~i~~-~~~--~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~ 233 (386)
T 3sg0_A 158 GAKKVGYIGF-SDA--YGEG-YYKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKA 233 (386)
T ss_dssp TCCEEEEEEE-SSH--HHHH-HHHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHH
T ss_pred CCCEEEEEec-Cch--HHHH-HHHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHH
Confidence 4578888753 221 2222 23567778888898753 2222222334444555555688998887765666777887
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 234 ~~~~ 237 (386)
T 3sg0_A 234 LRER 237 (386)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7654
No 227
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=30.83 E-value=84 Score=26.11 Aligned_cols=68 Identities=25% Similarity=0.278 Sum_probs=40.0
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc-CCCh-----HHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS-GDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG-GDGt-----l~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
++...+...|++++..... ..-+.++++.+...++|.||+-. |-+. +..+.+.++.. .++|+-++|.
T Consensus 87 ~~~~~~~~~g~~~~~~v~~-G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~------~~~pVlvv~~ 159 (162)
T 1mjh_A 87 NIKKELEDVGFKVKDIIVV-GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKK------SNKPVLVVKR 159 (162)
T ss_dssp HHHHHHHHTTCEEEEEEEE-ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHH------CCSCEEEECC
T ss_pred HHHHHHHHcCCceEEEEcC-CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHh------CCCCEEEEeC
Confidence 4455566678877654332 23455666666656788776642 2332 33455555554 2689999986
Q ss_pred C
Q 011517 206 G 206 (484)
Q Consensus 206 G 206 (484)
.
T Consensus 160 ~ 160 (162)
T 1mjh_A 160 K 160 (162)
T ss_dssp C
T ss_pred C
Confidence 4
No 228
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=30.81 E-value=2.3e+02 Score=26.81 Aligned_cols=77 Identities=12% Similarity=0.088 Sum_probs=49.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.+|..... .+.. ..+.++..|+++|+++.. .......+....++++...+.|.|++++.|.....++..+
T Consensus 141 ~~~iaii~~~~~---~g~~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~ 216 (364)
T 3lop_A 141 VTRIGVLYQEDA---LGKE-AITGVERTLKAHALAITAMASYPRNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQY 216 (364)
T ss_dssp CCCEEEEEETTH---HHHH-HHHHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHH
T ss_pred CceEEEEEeCch---hhHH-HHHHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHH
Confidence 467888875432 1222 235677888899887532 2222233445556666657899999988777778888887
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 217 ~~~ 219 (364)
T 3lop_A 217 RAR 219 (364)
T ss_dssp HHT
T ss_pred HHc
Confidence 655
No 229
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=30.51 E-value=63 Score=29.06 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=42.2
Q ss_pred hHHHHHHhcCCeEEEEecCChh------------HH-----HHHH-----HHhhcCCCceEEEEcCCChHH-----HHHH
Q 011517 132 DVKPLLEDANIQFTVQETTQQL------------HA-----KEIV-----KVLDLSKYDGIVCVSGDGILV-----EVVN 184 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~------------~a-----~~l~-----~~~~~~~~d~IV~vGGDGtl~-----evin 184 (484)
.....|+.+|++++++-.+... +. ..+. .+++...||.|++.||.|... +-+.
T Consensus 33 ~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~D~livpGG~~~~~~l~~~~~l~ 112 (224)
T 1u9c_A 33 VPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQ 112 (224)
T ss_dssp HHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCGGGGSSCSEEEECCCTTHHHHSTTCHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHHcChhhCCEEEECCCcchHHHhhcCHHHH
Confidence 3455688899988876543210 01 1121 122234799999999988742 1122
Q ss_pred HHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 185 GLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 185 gL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
.++.+.. ...-+|+-|=.|+. .||..
T Consensus 113 ~~l~~~~---~~~k~iaaiC~G~~-~La~a 138 (224)
T 1u9c_A 113 YVLQQFA---EDGRIIAAVCHGPS-GLVNA 138 (224)
T ss_dssp HHHHHHH---HTTCEEEEETTGGG-GGTTC
T ss_pred HHHHHHH---HCCCEEEEEChHHH-HHHHc
Confidence 2222110 12457888777754 44443
No 230
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=30.33 E-value=31 Score=27.22 Aligned_cols=26 Identities=15% Similarity=0.438 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~~i~~ 112 (117)
T 1v5u_A 87 RVYNFCAQDVPSAQQWVDRIQSCLSS 112 (117)
T ss_dssp CEEEEECSSHHHHHHHHHHHHTTCCC
T ss_pred ceEEEECCCHHHHHHHHHHHHHHhcc
Confidence 46888889999999999999888653
No 231
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.32 E-value=42 Score=26.68 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~al~~~~~~ 102 (114)
T 2da0_A 77 RTYHFQAEDEQDYVAWISVLTNSKEE 102 (114)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999988653
No 232
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=30.07 E-value=1.9e+02 Score=25.28 Aligned_cols=65 Identities=8% Similarity=0.011 Sum_probs=42.3
Q ss_pred CCcEEEEEEcCCC---CCcc-------hhhchHHhHHHHH--HhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 108 RPKRLYIFVNPFG---GKKI-------ASKIFLDDVKPLL--EDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 108 ~~~r~lviiNP~s---G~~~-------a~~~~~~~v~p~l--~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
-+++++||-=|.- |++. ...-.++.++..- .+.|++++.+.+.+.+...+...+...+++|+||+
T Consensus 13 ~~~~IlVlNGPNLNlLG~REP~iYG~~TL~di~~~l~~~a~~~~~g~~v~~~QSN~EGeLId~Ih~A~~~~~dgIII 89 (167)
T 3kip_A 13 LVKKVLLINGPNLNLLGTREPEKYGTTSLSDIEQAAIEQAKLKNNDSEVLVFQSNTEGFIIDRIHEAKRQGVGFVVI 89 (167)
T ss_dssp CCCEEEEEECTTGGGTTCC----CCSCCHHHHHHHHHHHHHHTCSSCEEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCeEEEEcCCCccccCCCCCCcCCcCCHHHHHHHHHHHhccccCCcEEEEEecCCHHHHHHHHHHhhhcCccEEEE
Confidence 3567888877763 2221 1111233444444 44678999999999999988888875356888886
No 233
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=30.04 E-value=47 Score=26.10 Aligned_cols=26 Identities=15% Similarity=0.431 Sum_probs=22.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 77 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 102 (113)
T 1pls_A 77 QDHFFQAAFLEERDAWVRDINKAIKC 102 (113)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999998764
No 234
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=29.91 E-value=32 Score=28.11 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=21.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 100 QTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999988764
No 235
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=29.79 E-value=96 Score=27.61 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=39.7
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..+..+|++.|+++.. +.........+.++++...++|.||+.||=|. ..|++..+.+
T Consensus 52 ~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~D~t~eal~~l~~ 116 (185)
T 3rfq_A 52 PLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPRDVTPESTREILD 116 (185)
T ss_dssp HHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCcccHHHHHHHHhc
Confidence 4788899999987643 44555565666555543357999999999764 5566665544
No 236
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=29.72 E-value=31 Score=29.72 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=46.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChH----HHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGIL----VEV 182 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl----~ev 182 (484)
++++|++=.. .|.+++ +.+.+...|...|++++++...... ..++.++|.||++. |+|.+ .++
T Consensus 10 ~ki~I~Y~S~--tGnT~~-~A~~ia~~l~~~g~~v~~~~~~~~~-------~~~l~~~d~ii~g~pt~g~G~~p~~~~~f 79 (167)
T 1ykg_A 10 PGITIISASQ--TGNARR-VAEALRDDLLAAKLNVKLVNAGDYK-------FKQIASEKLLIVVTSTQGEGEPPEEAVAL 79 (167)
T ss_dssp --CEEEEECS--SSHHHH-HHHHHHHHHHHHTCCCEEEEGGGCC-------GGGGGGCSEEEEEEECBGGGBCCGGGHHH
T ss_pred CeEEEEEECC--chHHHH-HHHHHHHHHHHCCCceEEeehhhCC-------HHHhccCCeEEEEEcccCCCcCChhHHHH
Confidence 4678888444 455554 4568888888888887776443211 11234688777654 46653 445
Q ss_pred HHHHhcCcCcccccCCcEEEecCC
Q 011517 183 VNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP~G 206 (484)
++.|..... ......+++++=+|
T Consensus 80 ~~~l~~~~~-~~l~~k~~avfg~G 102 (167)
T 1ykg_A 80 HKFLFSKKA-PKLENTAFAVFSLG 102 (167)
T ss_dssp HHHHTSTTC-CCCTTCEEEEEEEC
T ss_pred HHHHHhccc-cccCCCEEEEEeec
Confidence 555532100 01124566666544
No 237
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=29.67 E-value=1.5e+02 Score=27.81 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|+.+|..+.. -+.. ..+.++..|+++|+++... ......+....++++...+.|+|++.+.|.....++..+
T Consensus 138 ~~~i~~i~~~~~---~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~ 213 (346)
T 1usg_A 138 PQRIAIIHDKQQ---YGEG-LARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQA 213 (346)
T ss_dssp CSSEEEEECSSH---HHHH-HHHHHHHHHHHTTCCEEEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred CCeEEEEECCCc---hHHH-HHHHHHHHHHHcCCEEEEEeccCCCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHH
Confidence 577888876421 1222 2246677888889876432 222222334555666556789999887666666777777
Q ss_pred hcC
Q 011517 187 LER 189 (484)
Q Consensus 187 ~~~ 189 (484)
.+.
T Consensus 214 ~~~ 216 (346)
T 1usg_A 214 RSV 216 (346)
T ss_dssp HHT
T ss_pred HHc
Confidence 654
No 238
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=29.62 E-value=45 Score=26.82 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.3
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 88 r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 88 RTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999988653
No 239
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=29.48 E-value=85 Score=26.62 Aligned_cols=86 Identities=14% Similarity=0.182 Sum_probs=45.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
++++|++= |..|.+.++ .+.+...|... +.++++...... ..++.+||.||++. ++|.+...+..+
T Consensus 1 ~kilIvY~--S~tGnT~~v-A~~ia~~l~~~-~~v~~~~~~~~~-------~~~l~~~d~ii~g~pty~~g~~p~~~~~f 69 (169)
T 1czn_A 1 AKIGLFYG--TQTGVTQTI-AESIQQEFGGE-SIVDLNDIANAD-------ASDLNAYDYLIIGCPTWNVGELQSDWEGI 69 (169)
T ss_dssp CCEEEEEC--CSSSHHHHH-HHHHHHHHTST-TTEEEEEGGGCC-------GGGGGGCSEEEEECCEETTTEECHHHHHH
T ss_pred CeEEEEEE--CCCcHHHHH-HHHHHHHhCcc-cceEEEEhhhCC-------HhHHhhCCEEEEEecccCCCcCCHHHHHH
Confidence 35677774 444566553 45777777654 456665433211 11345789888865 667666555444
Q ss_pred hcCcCcccccCCcEEEecCC
Q 011517 187 LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~G 206 (484)
+..-........+++++-+|
T Consensus 70 ~~~l~~~~l~gk~~~~f~t~ 89 (169)
T 1czn_A 70 YDDLDSVNFQGKKVAYFGAG 89 (169)
T ss_dssp GGGGGGSCCTTCEEEEEEEC
T ss_pred HHHhhhhccCCCEEEEEEEC
Confidence 44211111124566665544
No 240
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=29.44 E-value=42 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=23.3
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
.+.+.|...++++.+.|+++|+..+..
T Consensus 87 ~~~~~l~a~s~~e~~~Wi~al~~~~~~ 113 (118)
T 1v89_A 87 QDSYVLMASSQAEMEEWVKFLRRVAGS 113 (118)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence 367889999999999999999998764
No 241
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=29.40 E-value=49 Score=29.05 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=34.7
Q ss_pred hHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 153 LHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 153 ~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
..|+++.+.+...++ .||.-||.|....+..|.++.. ...+|++|.
T Consensus 20 ~~A~~lg~~La~~g~-~lV~Ggg~GiM~aa~~gAl~~g------G~tiGV~~~ 65 (171)
T 1weh_A 20 ARWVRYGEVLAEEGF-GLACGGYQGGMEALARGVKAKG------GLVVGVTAP 65 (171)
T ss_dssp HHHHHHHHHHHHTTE-EEEECCSSTHHHHHHHHHHHTT------CCEEECCCG
T ss_pred HHHHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------CcEEEEecc
Confidence 356677777765443 7788888999999998887653 578999885
No 242
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=29.04 E-value=86 Score=25.27 Aligned_cols=69 Identities=13% Similarity=0.132 Sum_probs=40.2
Q ss_pred HhHHHHHHhcCCeE-EEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH---HHHHHHhcCcCcccccCCcEEEecCC
Q 011517 131 DDVKPLLEDANIQF-TVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV---EVVNGLLEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 131 ~~v~p~l~~ag~~~-~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~---evingL~~~~~~~~~~~~pigiIP~G 206 (484)
+.++.+.+..|+++ ..... ...-+.++++.+...++|.||+-.--|.+. .+.+.++.. .+.|+-++|.+
T Consensus 67 ~~l~~~~~~~~~~~~~~~~~-~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~lgs~~~~vl~~------~~~pVlvv~~~ 139 (141)
T 1jmv_A 67 KALLDLAESVDYPISEKLSG-SGDLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMSSTRQVMNT------IKIDMLVVPLR 139 (141)
T ss_dssp HHHHHHHHHSSSCCCCEEEE-EECHHHHHHHHHHHTTCCEEEEEECCCCHHHHHHHHHHHHTT------CCSEEEEEECC
T ss_pred HHHHHHHHHcCCCceEEEEe-cCCHHHHHHHHHHhcCCCEEEEeCCCchhhhhcchHHHHHhc------CCCCEEEeeCC
Confidence 45566666677764 22221 223345666666656788888764433333 345555554 26899999864
No 243
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=28.94 E-value=1.5e+02 Score=28.50 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=56.6
Q ss_pred EEEEcCC-CCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-------------
Q 011517 113 YIFVNPF-GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI------------- 178 (484)
Q Consensus 113 lviiNP~-sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt------------- 178 (484)
.+++||. |.-+++..+ +.....|..-|++.-++-+...+.+.++++.. +.-|+-||||.
T Consensus 65 ~i~l~~~~ss~~kgEsl--~DTarvLs~~~~D~iviR~~~~~~~~~la~~~-----~vPVINagdg~~~HPtQaLaDl~T 137 (304)
T 3r7f_A 65 VLNLDGTSTSVQKGETL--YDTIRTLESIGVDVCVIRHSEDEYYEELVSQV-----NIPILNAGDGCGQHPTQSLLDLMT 137 (304)
T ss_dssp EEEEETTSTTSCSSSCH--HHHHHHHHHHTCCEEEEECSSTTCHHHHHHHC-----SSCEEESCCTTSCCHHHHHHHHHH
T ss_pred EEEECcccccCCCCCCH--HHHHHHHHHhcCCEEEEecCChhHHHHHHHhC-----CCCEEeCCCCCCcCcHHHHHHHHH
Confidence 3445884 334444443 35666788877788888888778788887653 34588888883
Q ss_pred HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhhc
Q 011517 179 LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSL 215 (484)
Q Consensus 179 l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl 215 (484)
+.|-.. ....+.|+++--|.-|.+|+|+
T Consensus 138 i~e~~g---------~l~glkva~vGD~~~~rva~Sl 165 (304)
T 3r7f_A 138 IYEEFN---------TFKGLTVSIHGDIKHSRVARSN 165 (304)
T ss_dssp HHHHHS---------CCTTCEEEEESCCTTCHHHHHH
T ss_pred HHHHhC---------CCCCCEEEEEcCCCCcchHHHH
Confidence 333221 1236789998777767788886
No 244
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=28.79 E-value=1e+02 Score=29.85 Aligned_cols=69 Identities=19% Similarity=0.157 Sum_probs=40.0
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
.-+.|+-||..-.|++.++....++..-.++|+.+. ..+...+ .++.+.+...++|.||++|=--.|.+
T Consensus 28 ~i~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ilp~ 96 (314)
T 1fmt_A 28 NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVF--QPVSLRP-QENQQLVAELQADVMVVVAYGLILPK 96 (314)
T ss_dssp EEEEEECCCCBC------CBCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHHTTCSEEEEESCCSCCCH
T ss_pred cEEEEEeCCCCccccccccCcCHHHHHHHHcCCcEE--ecCCCCC-HHHHHHHHhcCCCEEEEeeccccCCH
Confidence 446788898655555555555678888888999863 3333222 23444554457899999986555543
No 245
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=28.76 E-value=1.2e+02 Score=24.28 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=45.6
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc--CCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS--GDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG--GDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
....++.+|+..|..+.+.......+|.+.+++ ..+|.|++-- .|..-.+++..|..... ...+|+-++-.
T Consensus 17 ~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~---~~~dlii~D~~l~~~~g~~~~~~lr~~~~---~~~~pii~~s~ 89 (144)
T 3kht_A 17 DIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQ---AKYDLIILDIGLPIANGFEVMSAVRKPGA---NQHTPIVILTD 89 (144)
T ss_dssp HHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTT---CCCSEEEECTTCGGGCHHHHHHHHHSSST---TTTCCEEEEET
T ss_pred HHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhc---CCCCEEEEeCCCCCCCHHHHHHHHHhccc---ccCCCEEEEeC
Confidence 446788899999988778778887777665543 5688877731 12233477777765311 13567766643
No 246
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=28.76 E-value=1.2e+02 Score=26.59 Aligned_cols=68 Identities=15% Similarity=0.088 Sum_probs=41.6
Q ss_pred EEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 113 YIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 113 lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+|=+-++|- .+.+.++..|++.|+++.-+=| .|+.-+..+++.+..+
T Consensus 24 IaIgsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g--------------------- 77 (166)
T 3s5p_A 24 VAFASDHGGR-----DLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSG--------------------- 77 (166)
T ss_dssp EEEEECGGGH-----HHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTT---------------------
T ss_pred EEEEECchHH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC---------------------
Confidence 4566666653 2456899999999988765533 2444444444443322
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 78 ----------~~d~GIliCGTGiG~sIaAN 97 (166)
T 3s5p_A 78 ----------RADCCILVCGTGIGISIAAN 97 (166)
T ss_dssp ----------SCSEEEEEESSSHHHHHHHH
T ss_pred ----------CCcEEEEEcCCcHHHHHHhh
Confidence 34567888888888877654
No 247
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=28.54 E-value=50 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=22.3
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
.+.+.|...++++++.|+++|+....
T Consensus 78 ~~~~~~~a~s~~e~~~Wi~al~~a~~ 103 (109)
T 1wgq_A 78 MVFYVFKADDAHSTQRWIDAFQEGTV 103 (109)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 35688999999999999999988753
No 248
>1uqr_A 3-dehydroquinate dehydratase; shikimate pathway, aromatic amino acid biosynthesis, lyase; 1.7A {Actinobacillus pleuropneumoniae} SCOP: c.23.13.1
Probab=28.44 E-value=1.4e+02 Score=25.76 Aligned_cols=42 Identities=5% Similarity=-0.029 Sum_probs=33.6
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++.++....+.|++++.+.+.+.++..+..++.. .++|+||+
T Consensus 32 ~~~l~~~a~~~g~~l~~~QSN~EGeLId~Ih~a~-~~~dgiII 73 (154)
T 1uqr_A 32 EQHLQQSAQAQGYELDYFQANGEESLINRIHQAF-QNTDFIII 73 (154)
T ss_dssp HHHHHHHHHHTTCEEEEEECSSHHHHHHHHHHTT-TTCCEEEE
T ss_pred HHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEE
Confidence 4456666677899999999999999888888874 46888886
No 249
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=28.44 E-value=35 Score=26.53 Aligned_cols=24 Identities=4% Similarity=0.268 Sum_probs=20.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
+.+.|...++++.+.|+++|+..+
T Consensus 85 ~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 85 VHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHh
Confidence 458899999999999999998765
No 250
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.38 E-value=43 Score=26.87 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=22.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (120)
T 2d9x_A 80 EQYKLRATDAKERQHWVSRLQICTQ 104 (120)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999998865
No 251
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=28.19 E-value=2.7e+02 Score=26.25 Aligned_cols=94 Identities=12% Similarity=0.111 Sum_probs=62.3
Q ss_pred hcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc----CCCceEEE--------
Q 011517 105 SFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL----SKYDGIVC-------- 172 (484)
Q Consensus 105 ~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~----~~~d~IV~-------- 172 (484)
-..+|+.+.+|||-.. .++ +.++..|+..|+++.+..=-...+..+.++++.. ..+|.+||
T Consensus 38 m~~~~rG~~LIinn~~--~D~-----~~L~~~f~~LgF~V~~~~dlt~~em~~~l~~~~~~~dh~~~d~~v~~ilSHG~~ 110 (272)
T 3h11_A 38 MKSKPLGICLIIDCIG--NET-----ELLRDTFTSLGYEVQKFLHLSMHGISQILGQFACMPEHRDYDSFVCVLVSRGGS 110 (272)
T ss_dssp CCCSSSEEEEEEESSC--CCC-----SHHHHHHHHHTEEEEEEESCBHHHHHHHHHHHHTCGGGGGCSEEEEEEEEEEET
T ss_pred CCCCcceEEEEECCch--HHH-----HHHHHHHHHCCCEEEEeeCCCHHHHHHHHHHHHhccccCCCCEEEEEEEcCCCC
Confidence 3456788888888642 122 4788899999999998877777777777766542 34665443
Q ss_pred ---EcCCCh-----HHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 173 ---VSGDGI-----LVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 173 ---vGGDGt-----l~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
.|=||. +.++.+-+-......-.-++-|-+|-+
T Consensus 111 g~i~g~D~~~~~v~l~~i~~~f~~~~CpsL~gKPKlffiQA 151 (272)
T 3h11_A 111 QSVYGVDQTHSGLPLHHIRRMFMGDSCPYLAGKPKMFFIQN 151 (272)
T ss_dssp TEECBTSCCSSCEEHHHHHHHHSTTTCGGGTTSCEEEEEEE
T ss_pred CeEEEEcCCcceEeHHHHHHHhccccChhhcCCCcEEEEEC
Confidence 466886 788887775542222233566777876
No 252
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=28.04 E-value=3e+02 Score=26.45 Aligned_cols=80 Identities=19% Similarity=0.146 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhh----hcCCCcEEE-EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe---cCChhHHHHHHH
Q 011517 89 EDSKRLWCEKLRDFID----SFGRPKRLY-IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE---TTQQLHAKEIVK 160 (484)
Q Consensus 89 ~~~~~~w~~~l~~~~~----~~~~~~r~l-viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~---T~~~~~a~~l~~ 160 (484)
.+.|+...+.|++.+. ..++...+. |++ |...|.+.|.+.-....++.|+++..+. +..+.+..+..+
T Consensus 29 k~iA~~i~~~l~~~v~~l~~~~g~~P~LavIlV----G~dpaS~~Yv~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~ 104 (303)
T 4b4u_A 29 RALAKQIEENLLVRVEALKAKTGRTPILATILV----GDDGASATYVRMKGNACRRVGMDSLKIELPQETTTEQLLAEIE 104 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCcEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHH
Confidence 4456666666665543 235555555 555 5567788898888899999999876654 334555666667
Q ss_pred Hhhc-CCCceEEE
Q 011517 161 VLDL-SKYDGIVC 172 (484)
Q Consensus 161 ~~~~-~~~d~IV~ 172 (484)
+++. ...|+|++
T Consensus 105 ~LN~D~~V~GIlV 117 (303)
T 4b4u_A 105 KLNANPDVHGILL 117 (303)
T ss_dssp HHHTCTTCCEEEE
T ss_pred HhcCCCCccEEEE
Confidence 7764 35678876
No 253
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=28.01 E-value=81 Score=30.62 Aligned_cols=69 Identities=17% Similarity=0.125 Sum_probs=39.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
..-+.|+-||..-.+++.+....-|+..-+++|+.+. ..+...+ .++.+.+...++|.||++|=--.|.
T Consensus 31 ~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~~~gIpv~--~~~~~~~-~~~~~~l~~~~~Dliv~~~y~~ilp 99 (318)
T 3q0i_A 31 HEIIAVYTQPERPAGRGKKLTASPVKTLALEHNVPVY--QPENFKS-DESKQQLAALNADLMVVVAYGLLLP 99 (318)
T ss_dssp SEEEEEECCCC---------CCCHHHHHHHHTTCCEE--CCSCSCS-HHHHHHHHTTCCSEEEESSCCSCCC
T ss_pred CcEEEEEcCCCCcccccccCCCCHHHHHHHHcCCCEE--ccCcCCC-HHHHHHHHhcCCCEEEEeCccccCC
Confidence 3456788888655555555555678888888999863 2322222 2455666656899999887655554
No 254
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=27.87 E-value=3.4e+02 Score=25.76 Aligned_cols=79 Identities=15% Similarity=0.234 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhhhhc---CC-CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF---GR-PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~---~~-~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (484)
+.++...+.+++.+..+ ++ |+=..|++ |...|.+.|.+.-....++.|+.+..+.- ..+.+..+..+++
T Consensus 10 ~ia~~i~~~~~~~v~~l~~~g~~P~Lavilv----g~dpas~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~l 85 (281)
T 2c2x_A 10 ATRDEIFGDLKQRVAALDAAGRTPGLGTILV----GDDPGSQAYVRGKHADCAKVGITSIRRDLPADISTATLNETIDEL 85 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCceEEEEEe----CCChhhHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 34555666665554322 33 55445555 55567788988888899999998876543 3455666667777
Q ss_pred hc-CCCceEEE
Q 011517 163 DL-SKYDGIVC 172 (484)
Q Consensus 163 ~~-~~~d~IV~ 172 (484)
+. ...|+|++
T Consensus 86 N~D~~v~GIlv 96 (281)
T 2c2x_A 86 NANPDCTGYIV 96 (281)
T ss_dssp HHCTTCCEEEE
T ss_pred cCCCCCCEEEE
Confidence 54 35678776
No 255
>1gqo_A Dehydroquinase; dehydratase, lyase; 2.10A {Bacillus subtilis} SCOP: c.23.13.1
Probab=27.82 E-value=1.3e+02 Score=25.65 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=33.6
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++.++....+.|++++.+.+.+.++..+..++.. .++|+||+
T Consensus 31 ~~~l~~~a~~~g~~~~~~QSN~EgeLid~Ih~a~-~~~dgiii 72 (143)
T 1gqo_A 31 ETDLFQFAEALHIQLTFFQSNHEGDLIDAIHEAE-EQYSGIVL 72 (143)
T ss_dssp HHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHHT-TTCSEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEE
Confidence 4456666677799999999999999988888875 46888885
No 256
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=27.68 E-value=37 Score=29.09 Aligned_cols=87 Identities=9% Similarity=0.083 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh------hH---HHHHHHHhhcCCCceEEEEcCCChH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ------LH---AKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~------~~---a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
.+|+.|++-|..-. .. + ......|+.+|++++++-.+.. +. +.....+++...||.|++.||.|.-
T Consensus 2 ~~ki~il~~~g~~~---~e-~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~ 76 (168)
T 3l18_A 2 SMKVLFLSADGFED---LE-L-IYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPE 76 (168)
T ss_dssp CCEEEEECCTTBCH---HH-H-HHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHH
T ss_pred CcEEEEEeCCCccH---HH-H-HHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHH
Confidence 35777777663211 11 1 1345577778887776543321 00 0000122222369999999998763
Q ss_pred H--------HHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 180 V--------EVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 180 ~--------evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
. +.+..... ...+|+-|=.|+
T Consensus 77 ~~~~~~~l~~~l~~~~~-------~~k~i~aiC~G~ 105 (168)
T 3l18_A 77 IVRLNEKAVMITRRMFE-------DDKPVASICHGP 105 (168)
T ss_dssp HHTTCHHHHHHHHHHHH-------TTCCEEEETTTH
T ss_pred HhccCHHHHHHHHHHHH-------CCCEEEEECHhH
Confidence 2 12222222 246788877775
No 257
>2c4w_A 3-dehydroquinate dehydratase; 3-dehydroquinase, shikimate pathway, aromatic amino acid biosynthesis, lyase, sulphonamide; HET: GAJ; 1.55A {Helicobacter pylori} PDB: 2c57_A* 2xda_A* 1j2y_A* 2wks_A* 2xb9_A* 2c4v_A* 2xd9_A*
Probab=27.50 E-value=1.2e+02 Score=26.74 Aligned_cols=43 Identities=12% Similarity=0.234 Sum_probs=33.7
Q ss_pred HHhHHHHHH--hcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 130 LDDVKPLLE--DANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 130 ~~~v~p~l~--~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++.++.... ..|++++.+.|.+.++..+...+...+++|+||+
T Consensus 40 ~~~l~~~a~~~~~g~~l~~~QSN~EGeLId~Ih~a~~~~~dgIII 84 (176)
T 2c4w_A 40 HEIMQTFVKQGNLDVELEFFQTNFEGEIIDKIQESVGSEYEGIII 84 (176)
T ss_dssp HHHHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHSSSCCEEEE
T ss_pred HHHHHHHhccccCCCEEEEEeeCcHHHHHHHHHHhccCCeeEEEE
Confidence 345566666 6788999999999999998888876445888886
No 258
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=27.30 E-value=47 Score=28.67 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|++.+...
T Consensus 97 rt~~l~A~s~~e~~~Wi~aL~~~i~~n 123 (164)
T 2lul_A 97 NTLYIFAPSPQSRDLWVKKLKEEIKNN 123 (164)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHTTC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHHC
Confidence 467888899999999999999998643
No 259
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=27.17 E-value=2.1e+02 Score=26.29 Aligned_cols=78 Identities=10% Similarity=0.131 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhc-----CCCceEEEEcCCChHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDL-----SKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~-----~~~d~IV~vGGDGtl~ev 182 (484)
.+|+.+|..|..-. .....+ +-.+..|+++|+++.++.+.. ...+.+.++++.. ..+|+|+ +..|.+...+
T Consensus 131 ~~~I~~i~~~~~~~-~~~~R~-~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~ 207 (295)
T 3hcw_A 131 VDELIFITEKGNFE-VSKDRI-QGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAI 207 (295)
T ss_dssp CSEEEEEEESSCCH-HHHHHH-HHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHH
T ss_pred CccEEEEcCCccch-hHHHHH-HHHHHHHHHcCCCeeEEeccCCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHH
Confidence 46888887664322 223333 356677888999887665543 3445555555421 2577765 5788888888
Q ss_pred HHHHhcC
Q 011517 183 VNGLLER 189 (484)
Q Consensus 183 ingL~~~ 189 (484)
++.|.+.
T Consensus 208 ~~al~~~ 214 (295)
T 3hcw_A 208 LSVLYEL 214 (295)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 8888765
No 260
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=27.12 E-value=1.7e+02 Score=27.50 Aligned_cols=78 Identities=6% Similarity=0.007 Sum_probs=48.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|.... ..+.. ..+.++..|+++|+++... ......+....++++...+.|.|++++.|.....++..
T Consensus 137 g~~~iaii~~~~---~~~~~-~~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~ 212 (356)
T 3ipc_A 137 KDAKVAIIHDKT---PYGQG-LADETKKAANAAGVTEVMYEGVNVGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQ 212 (356)
T ss_dssp TTCCEEEEECSS---HHHHH-HHHHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCCC---hHHHH-HHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHH
Confidence 346788886532 12222 2356778888899875322 22222334455666655689999988888877788887
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 213 ~~~~ 216 (356)
T 3ipc_A 213 AADQ 216 (356)
T ss_dssp HHHH
T ss_pred HHHC
Confidence 7654
No 261
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.04 E-value=47 Score=26.05 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=22.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 79 r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 79 KTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45888899999999999999988753
No 262
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=26.98 E-value=93 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.242 Sum_probs=38.3
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcC-CCceEEEEcCCCh-----HHHHHHHHhc
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLS-KYDGIVCVSGDGI-----LVEVVNGLLE 188 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~-~~d~IV~vGGDGt-----l~evingL~~ 188 (484)
..+...|++.|+++.. +.........+.++++... ++|.||+.||=|. ..|++..+..
T Consensus 24 ~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D~t~ea~~~~~~ 89 (164)
T 2is8_A 24 LAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRDRTPEATRELLD 89 (164)
T ss_dssp HHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHTTCS
T ss_pred HHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCCChHHHHHHHhC
Confidence 3678889989986543 4455555566666555433 7999999999663 4566665543
No 263
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=26.97 E-value=37 Score=32.08 Aligned_cols=54 Identities=15% Similarity=0.072 Sum_probs=33.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEE
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~v 173 (484)
++|+|++ .|.. ...-.+.+...|+..|++++++.+..... ...++++||.||..
T Consensus 4 m~~vLiV----~g~~--~~~~a~~l~~aL~~~g~~V~~i~~~~~~~-----~~~~L~~yDvIIl~ 57 (259)
T 3rht_A 4 MTRVLYC----GDTS--LETAAGYLAGLMTSWQWEFDYIPSHVGLD-----VGELLAKQDLVILS 57 (259)
T ss_dssp --CEEEE----ESSC--TTTTHHHHHHHHHHTTCCCEEECTTSCBC-----SSHHHHTCSEEEEE
T ss_pred CceEEEE----CCCC--chhHHHHHHHHHHhCCceEEEeccccccc-----ChhHHhcCCEEEEc
Confidence 4677777 2321 11123568889999999999877665321 11134589999987
No 264
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=26.67 E-value=43 Score=29.28 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-----------hH---HHHHHHHhhcCCCceEEEE
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-----------LH---AKEIVKVLDLSKYDGIVCV 173 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-----------~~---a~~l~~~~~~~~~d~IV~v 173 (484)
.++++.|++.|..-. .. + ......|+.++++++++-.+.. +. +.....+++...||.||+.
T Consensus 8 ~~~~v~il~~~g~~~---~e-~-~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livp 82 (190)
T 2vrn_A 8 TGKKIAILAADGVEE---IE-L-TSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLP 82 (190)
T ss_dssp TTCEEEEECCTTCBH---HH-H-HHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEEC
T ss_pred CCCEEEEEeCCCCCH---HH-H-HHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEEC
Confidence 457788887653221 11 1 1345678888888776543321 00 0000112222479999999
Q ss_pred cCCChHHHH-----HHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 174 SGDGILVEV-----VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 174 GGDGtl~ev-----ingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
||.+..... +..++.+.. ....+|+-|=.|+. .+|..
T Consensus 83 GG~~~~~~~~~~~~l~~~l~~~~---~~gk~i~aiC~G~~-~La~a 124 (190)
T 2vrn_A 83 GGTVNPDKLRLEEGAMKFVRDMY---DAGKPIAAICHGPW-SLSET 124 (190)
T ss_dssp CCTHHHHHHTTCHHHHHHHHHHH---HTTCCEEEC-CTTH-HHHHT
T ss_pred CCchhHHHHhhCHHHHHHHHHHH---HcCCEEEEECHhHH-HHHhC
Confidence 997433221 111222110 12468888877774 45543
No 265
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=26.49 E-value=1.7e+02 Score=25.35 Aligned_cols=40 Identities=13% Similarity=0.159 Sum_probs=27.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
..+...|+++|.++.++.... .. .++...++|+||+-||.
T Consensus 14 ~~~~~~l~~~G~~~~~~~~~~--~~----~~~~~~~~dglil~Gg~ 53 (189)
T 1wl8_A 14 HRIWRTLRYLGVETKIIPNTT--PL----EEIKAMNPKGIIFSGGP 53 (189)
T ss_dssp HHHHHHHHHTTCEEEEEETTC--CH----HHHHHTCCSEEEECCCS
T ss_pred HHHHHHHHHCCCeEEEEECCC--Ch----HHhcccCCCEEEECCCC
Confidence 356778888999888766433 11 22332479999999995
No 266
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=26.48 E-value=45 Score=26.16 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=20.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
+.+.|...++++++.|+++|++..
T Consensus 87 r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 87 KTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 568899999999999999998764
No 267
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=26.47 E-value=1.1e+02 Score=26.51 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=38.2
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~~~ 189 (484)
..+..+|++.|+++.. +.... ....+..+++...++|.||+.||=|. ..|++..++++
T Consensus 30 ~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g~~D~t~eal~~~~~~ 94 (164)
T 3pzy_A 30 PIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIAPTDSTPDQTVAVVDY 94 (164)
T ss_dssp HHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTCSE
T ss_pred HHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCCCCccHHHHHHHHhcc
Confidence 3688889999987532 33444 55555555543347999999999664 56777666543
No 268
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=26.17 E-value=94 Score=27.18 Aligned_cols=67 Identities=13% Similarity=0.055 Sum_probs=41.0
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec-------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T-------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
+|-+-++|- .+.+.++..|++.|+++.-+-| .|+.-+..+++.+..+
T Consensus 7 aigsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~g--------------------- 60 (162)
T 2vvp_A 7 YLGADHAGY-----ELKQRIIEHLKQTGHEPIDCGALRYDADDDYPAFCIAAATRTVAD--------------------- 60 (162)
T ss_dssp EEEECHHHH-----HHHHHHHHHHHHTTCEEEECSCCSCCTTCCHHHHHHHHHHHHHHS---------------------
T ss_pred EEEeCchhH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHcC---------------------
Confidence 555555553 2446889999999987765432 2344444444443322
Q ss_pred hcCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 187 LEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 61 ----------~~d~GIliCGTGiG~siaAN 80 (162)
T 2vvp_A 61 ----------PGSLGIVLGGSGNGEQIAAN 80 (162)
T ss_dssp ----------TTCEEEEEESSSHHHHHHHH
T ss_pred ----------CCceEEEEeCCcHHHHHHHh
Confidence 34567888888888877654
No 269
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=26.14 E-value=1.6e+02 Score=23.23 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=26.5
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ 151 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~ 151 (484)
.++.|+..|..+ |-.+++++|+..|++++.+....
T Consensus 17 ~~v~vy~~~~Cp-------~C~~ak~~L~~~~i~~~~~dvd~ 51 (114)
T 3h8q_A 17 SRVVIFSKSYCP-------HSTRVKELFSSLGVECNVLELDQ 51 (114)
T ss_dssp CSEEEEECTTCH-------HHHHHHHHHHHTTCCCEEEETTT
T ss_pred CCEEEEEcCCCC-------cHHHHHHHHHHcCCCcEEEEecC
Confidence 458888876544 44689999999999998876654
No 270
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=25.99 E-value=3.2e+02 Score=26.04 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhhc----CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec---CChhHHHHHHHHh
Q 011517 90 DSKRLWCEKLRDFIDSF----GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET---TQQLHAKEIVKVL 162 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~----~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T---~~~~~a~~l~~~~ 162 (484)
+.++...+.+++.+..+ ..|+=..|++ |...|.+.|.+.-....++.|+++..+.- ..+.+..+..+++
T Consensus 11 ~~a~~i~~~~~~~v~~l~~~~~~P~Lavilv----g~dpaS~~Yv~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~l 86 (285)
T 3p2o_A 11 ALSAKIKEELKEKNQFLKSKGIESCLAVILV----GDNPASQTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTL 86 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCCEEEEEEE----SCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEEEEe----CCCHHHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666666654332 3454444555 45567788988889999999998776543 3456667777777
Q ss_pred hcC-CCceEEE
Q 011517 163 DLS-KYDGIVC 172 (484)
Q Consensus 163 ~~~-~~d~IV~ 172 (484)
+.+ +.|+|++
T Consensus 87 N~d~~v~GIlv 97 (285)
T 3p2o_A 87 NHDDSVHGILV 97 (285)
T ss_dssp HHCTTCCEEEE
T ss_pred hCCCCCCEEEe
Confidence 653 6777765
No 271
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=25.97 E-value=48 Score=27.35 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.|.|..+++++.+.|+++|+....
T Consensus 96 r~y~l~A~s~~e~~~Wi~al~~a~~ 120 (126)
T 1v5p_A 96 QRYFLQANDQKDLKDWVEALNQASK 120 (126)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHh
Confidence 5699999999999999999988764
No 272
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=25.93 E-value=1.4e+02 Score=27.02 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=46.9
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
++.+++.|++. .....--.. +.+-++..+++.|+++.+..+...... +... ++|+||+.+.|-+ .+.+..+
T Consensus 6 ~~~~~Igvi~~-~~~~~~~~~-~~~gi~~~a~~~g~~~~~~~~~~~~~~-----~~~~-~vdgiI~~~~~~~-~~~~~~l 76 (277)
T 3cs3_A 6 RQTNIIGVYLA-DYGGSFYGE-LLEGIKKGLALFDYEMIVCSGKKSHLF-----IPEK-MVDGAIILDWTFP-TKEIEKF 76 (277)
T ss_dssp CCCCEEEEEEC-SSCTTTHHH-HHHHHHHHHHTTTCEEEEEESTTTTTC-----CCTT-TCSEEEEECTTSC-HHHHHHH
T ss_pred cCCcEEEEEec-CCCChhHHH-HHHHHHHHHHHCCCeEEEEeCCCCHHH-----Hhhc-cccEEEEecCCCC-HHHHHHH
Confidence 45567777763 322211122 234667778888988887766542111 1111 7999999998765 3555555
Q ss_pred hcCcCcccccCCcEEEe
Q 011517 187 LEREDWNDAIKVPLGVV 203 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiI 203 (484)
... .+|+-.+
T Consensus 77 ~~~-------~iPvV~~ 86 (277)
T 3cs3_A 77 AER-------GHSIVVL 86 (277)
T ss_dssp HHT-------TCEEEES
T ss_pred Hhc-------CCCEEEE
Confidence 443 5777665
No 273
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=25.84 E-value=3.6e+02 Score=24.16 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=47.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhcC---CCceEEEEcCCChHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLS---KYDGIVCVSGDGILVEVVN 184 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~---~~d~IV~vGGDGtl~evin 184 (484)
.+++.+|..|..- ......+ +-.+..|+++|+++.++... ....+.+.++++-.. ++|+|+ +..|.+...+++
T Consensus 118 ~~~i~~i~~~~~~-~~~~~R~-~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~ 194 (277)
T 3cs3_A 118 SKKVLLLSGPEKG-YDSQERL-AVSTRELTRFGIPYEIIQGDFTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYK 194 (277)
T ss_dssp CSCEEEEECCTTS-HHHHHHH-HHHHHHHHHTTCCEEEEECCSSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHH
T ss_pred CceEEEEeCCccC-ccHHHHH-HHHHHHHHHcCCCeeEEeCCCChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHH
Confidence 4678887766432 1222223 34566788889887644433 344556666665432 466665 467888888888
Q ss_pred HHhcC
Q 011517 185 GLLER 189 (484)
Q Consensus 185 gL~~~ 189 (484)
.|.+.
T Consensus 195 al~~~ 199 (277)
T 3cs3_A 195 YVAET 199 (277)
T ss_dssp HHTTS
T ss_pred HHHHc
Confidence 88665
No 274
>3g23_A Peptidase U61, LD-carboxypeptidase A; flavodoxin-like fold, catalytic triad, merops S66 unassigned peptidases family; HET: MSE; 1.89A {Novosphingobium aromaticivorans}
Probab=25.84 E-value=1e+02 Score=29.25 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhc--CCeEEEEecC----------ChhHHHHHHHHhhcCCCceEEE-EcCCC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQETT----------QQLHAKEIVKVLDLSKYDGIVC-VSGDG 177 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~a--g~~~~v~~T~----------~~~~a~~l~~~~~~~~~d~IV~-vGGDG 177 (484)
+-.-|+.|.|+-... .++ .....++.. |+++.+-.+- ....|.++.+.+...+.|+|+| .||+|
T Consensus 4 ~~I~ivaPSs~~~~~--~~~-~~~~~l~~~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 80 (274)
T 3g23_A 4 RRIAICAPSTPFTRE--DSA-RVIALAAAEFPDLSLSFHEQCFASEGHFAGSDALRLSAFLECANDDAFEAVWFVRGGYG 80 (274)
T ss_dssp EEEEEECSSSCCCHH--HHH-HHHHHHHHHCTTEEEEECGGGGCCSSSSSSCHHHHHHHHHHHHTCTTCSEEEESCCSSC
T ss_pred CEEEEEeCCCCCCHH--HHH-HHHHHHHhccCCeEEEECcchhhccCccCCCHHHHHHHHHHHhhCCCCCEEEEeecccc
Confidence 345678899875432 343 566677764 7766553221 2234556665555567887776 58899
Q ss_pred hHHHHHHHH
Q 011517 178 ILVEVVNGL 186 (484)
Q Consensus 178 tl~evingL 186 (484)
+. +++..|
T Consensus 81 a~-rlL~~l 88 (274)
T 3g23_A 81 AN-RIAEDA 88 (274)
T ss_dssp TH-HHHHHH
T ss_pred HH-HHHHhh
Confidence 74 556655
No 275
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=25.84 E-value=24 Score=26.93 Aligned_cols=23 Identities=9% Similarity=0.397 Sum_probs=19.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDF 102 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~ 102 (484)
+.+.|...++++.+.|+++|+++
T Consensus 70 r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 70 SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp EEEEEECCSSCCTHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhh
Confidence 46889899999999999999764
No 276
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=25.83 E-value=74 Score=30.86 Aligned_cols=70 Identities=19% Similarity=0.119 Sum_probs=39.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
..-+.|+-+|..-.|++.+....-|+..-.+.|+.+ +..+...+ .++.+.+...++|.||++|=--.|.+
T Consensus 26 ~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~~~gIpv--~~~~~~~~-~~~~~~l~~~~~Dliv~~~~~~ilp~ 95 (314)
T 3tqq_A 26 HRVLAVYTQPDRPSGRGQKIMESPVKEIARQNEIPI--IQPFSLRD-EVEQEKLIAMNADVMVVVAYGLILPK 95 (314)
T ss_dssp SEEEEEECCCC----------CCHHHHHHHHTTCCE--ECCSCSSS-HHHHHHHHTTCCSEEEEESCCSCCCH
T ss_pred CeEEEEEeCCCCccccCCccCCCHHHHHHHHcCCCE--ECcccCCC-HHHHHHHHhcCCCEEEEcCcccccCH
Confidence 345678888876555655555567888888899885 33333222 24555665568999999886555543
No 277
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=25.71 E-value=1.1e+02 Score=27.45 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=46.9
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-ChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-QQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
.+|+.++..+..+...+...+ +-.+..++++|++++++... ....+.+.++++-..++|+|+| ..|.+...+++.|.
T Consensus 115 ~~~I~~i~~~~~~~~~~~~R~-~gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~ 192 (255)
T 1byk_A 115 HRNISYLGVPHSDVTTGKRRH-EAYLAFCKAHKLHPVAALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQ 192 (255)
T ss_dssp CCCEEEECCCTTSTTTTHHHH-HHHHHHHHHTTCCCEEECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCcccHHHHH-HHHHHHHHHcCCCcceeecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHH
Confidence 467877765522222222223 34566788888876654333 3344556556554345777665 67888888888886
Q ss_pred cC
Q 011517 188 ER 189 (484)
Q Consensus 188 ~~ 189 (484)
+.
T Consensus 193 ~~ 194 (255)
T 1byk_A 193 EQ 194 (255)
T ss_dssp HT
T ss_pred Hc
Confidence 65
No 278
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=25.70 E-value=2.1e+02 Score=29.18 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=48.2
Q ss_pred HHHH-HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec-----------CChhHHHHH
Q 011517 91 SKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET-----------TQQLHAKEI 158 (484)
Q Consensus 91 ~~~~-w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T-----------~~~~~a~~l 158 (484)
.... +.+.+.+.+... ..+.+.|++.+..|.+. ..+..+|++.|+++..+.. ..+.+...+
T Consensus 158 ~~~~~Yi~~~~~~~~~~-~~~~lkivvd~~~Ga~~------~~~~~~l~~lG~~v~~l~~~~~f~~~~~~p~~~e~l~~l 230 (481)
T 4hjh_A 158 AALQAYADRYAGFLGKG-SLNGLRVGVYQHSSVAR------DLLMYLLTTLGVEPVALGRSDIFVPVDTEALRPEDIALL 230 (481)
T ss_dssp HHHHHHHHHHHHHHCTT-TTTTCEEEEEEETCTTH------HHHHHHHHHTTCEEEEEEECSSCCCCCTTSCCHHHHHHH
T ss_pred ccHHHHHHHHHHhcCcc-cccCCEEEEECCCChHH------HHHHHHHHHcCCeEEEecCCCCCCCCCCCCCCHHHHHHH
Confidence 4455 778777776432 12346677788655432 3567788999998765531 123344445
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.=|||
T Consensus 231 ~~~v~~~~aDlgia~DgDa 249 (481)
T 4hjh_A 231 AQWGKSDRLDAIVSTDGDA 249 (481)
T ss_dssp HHHHTSTTCSEEEEECTTS
T ss_pred HHHHHhcCCCEEEEECCCC
Confidence 5555556677777777776
No 279
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=25.68 E-value=50 Score=29.83 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=36.6
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC-CChHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG-DGILVE 181 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG-DGtl~e 181 (484)
.|++++-|..+- ...+...|+++|.++.++.... . ..+ +.++|+||+-|| .|++.+
T Consensus 14 ~~i~~id~~~~~--------~~~~~~~l~~~G~~~~vv~~~~--~----~~~--l~~~DglIl~GG~p~~~~~ 70 (212)
T 2a9v_A 14 LKIYVVDNGGQW--------THREWRVLRELGVDTKIVPNDI--D----SSE--LDGLDGLVLSGGAPNIDEE 70 (212)
T ss_dssp CBEEEEEESCCT--------TCHHHHHHHHTTCBCCEEETTS--C----GGG--GTTCSEEEEEEECSCGGGT
T ss_pred ceEEEEeCCCcc--------HHHHHHHHHHCCCEEEEEeCCC--C----HHH--HhCCCEEEECCCCCCCCcc
Confidence 357777665432 2356667888898887765432 1 112 245999999999 788755
No 280
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=25.53 E-value=2.3e+02 Score=22.84 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=27.3
Q ss_pred hHHhHHHHHHhcCCe---EEEEecCChhHHHHHHHHhhcCCCceEEEEcCC
Q 011517 129 FLDDVKPLLEDANIQ---FTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~---~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGD 176 (484)
|-.+++.+|+..|++ |+.+.......+++.+++..-...=-.|.++|.
T Consensus 33 ~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~g~ 83 (121)
T 3gx8_A 33 FSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVNKE 83 (121)
T ss_dssp HHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred cHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEECCE
Confidence 557899999999998 766544443444444444321222234555553
No 281
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=25.39 E-value=46 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=22.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
+.+.|...++++.+.|+++|+..+..
T Consensus 75 r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 75 RTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999998743
No 282
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=25.33 E-value=44 Score=26.95 Aligned_cols=25 Identities=16% Similarity=0.369 Sum_probs=22.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 95 ~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 95 ALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998865
No 283
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=25.33 E-value=1.3e+02 Score=30.83 Aligned_cols=51 Identities=10% Similarity=0.120 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEe
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQE 148 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~ 148 (484)
+....+.+.+.+.++. +.+.+.|++.|..|.+. ..+..+|++.|+++..+.
T Consensus 175 d~~~~Y~~~l~~~~~~--~~~~lkivvD~~nG~~~------~~~~~ll~~lG~~v~~l~ 225 (469)
T 3pdk_A 175 EGGQKYLQYIKQTVEE--DFSGLHIALDCAHGATS------SLAPYLFADLEADISTMG 225 (469)
T ss_dssp HHHHHHHHHHHTTCSS--CCTTCEEEEECTTSTTT------THHHHHHHHTTCEEEEES
T ss_pred cHHHHHHHHHHHhcCc--ccCCCEEEEECCCchHH------HHHHHHHHHcCCEEEEEC
Confidence 4556788877776642 34568899999988764 246677888898876553
No 284
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=25.28 E-value=3.9e+02 Score=24.37 Aligned_cols=105 Identities=11% Similarity=0.056 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCce
Q 011517 90 DSKRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDG 169 (484)
Q Consensus 90 ~~~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~ 169 (484)
+.+-.|.-.+-... +.+=.++-++.| ..+.+.. +++...+...|++++........-+..+++.+...++|.
T Consensus 21 ~~al~~A~~la~~~---~a~l~ll~v~~~----~~~~~~l-~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~a~~~~~dl 92 (290)
T 3mt0_A 21 GLALKRAQLIAGVT---QSHLHLLVCEKR----RDHSAAL-NDLAQELREEGYSVSTNQAWKDSLHQTIIAEQQAEGCGL 92 (290)
T ss_dssp CHHHHHHHHHHHHH---CCEEEEEEECSS----SCCHHHH-HHHHHHHHHTTCCEEEEEECSSSHHHHHHHHHHHHTCSE
T ss_pred hHHHHHHHHHHHhc---CCeEEEEEeeCc----HHHHHHH-HHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhcCCCE
Confidence 34555666554433 222222223333 3344333 567777778899887766533334556666655557887
Q ss_pred EEEEc-CCC-----hHHHHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 170 IVCVS-GDG-----ILVEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 170 IV~vG-GDG-----tl~evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
||+-. |.+ .+..+...++.. ...|+-++|.+..
T Consensus 93 iV~G~~~~~~~~~~~~gs~~~~vl~~------~~~PVlvv~~~~~ 131 (290)
T 3mt0_A 93 IIKQHFPDNPLKKAILTPDDWKLLRF------APCPVLMTKTARP 131 (290)
T ss_dssp EEEECCCSCTTSTTSCCHHHHHHHHH------CSSCEEEECCCSC
T ss_pred EEEecccCCchhhcccCHHHHHHHhc------CCCCEEEecCCCC
Confidence 66532 222 133455555554 2689999995443
No 285
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=25.18 E-value=1.4e+02 Score=30.80 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC-------------ChhHHHHH
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT-------------QQLHAKEI 158 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~-------------~~~~a~~l 158 (484)
...+.+.+.+.++. .+.+.|++.|..|.+. ..+..+|++.|+++..+..+ .+....++
T Consensus 178 ~~~Yi~~l~~~i~~---~~~lkIvvD~~~Ga~~------~~~~~il~~lG~~v~~~~~~pDg~Fp~~~p~P~~~~~l~~l 248 (485)
T 3uw2_A 178 ADQYVERIVGDIKL---TRPLKLVVDAGNGVAG------PLATRLFKALGCELVELFTDIDGNFPNHHPDPAHPENLQDV 248 (485)
T ss_dssp HHHHHHHHHTTCCC---SSCCCEEEECTTSTHH------HHHHHHHHHTTCCEEEESCSCCTTCCSSCSCTTSGGGGHHH
T ss_pred HHHHHHHHHHhcCc---ccCCEEEEEcCCCcHH------HHHHHHHHHcCCeEEEecCccCCCCCCCCcCCCCHHHHHHH
Confidence 44577777665532 2468899999988653 34667888889887654332 12223333
Q ss_pred HHHhhcCCCceEEEEcCCC
Q 011517 159 VKVLDLSKYDGIVCVSGDG 177 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDG 177 (484)
.+.....+.|..++.=|||
T Consensus 249 ~~~v~~~~aDlgia~DgDa 267 (485)
T 3uw2_A 249 IAKLKATDAEIGFAFDGDG 267 (485)
T ss_dssp HHHHHHSSCCEEEEECTTS
T ss_pred HHHHHhhCCCEEEEECCCC
Confidence 3333334566666666665
No 286
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=25.14 E-value=33 Score=37.53 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=50.1
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh----HHHH-----HHHHhhcCCCceEEEEcCCChH-
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL----HAKE-----IVKVLDLSKYDGIVCVSGDGIL- 179 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~----~a~~-----l~~~~~~~~~d~IV~vGGDGtl- 179 (484)
+++.||+-+. - .... + ..+...|+.+|++++++-.+... +... ...+.....||+||+.|| |.-
T Consensus 601 rKVaILlaDG--f-Ee~E-l-~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g~~~ 674 (753)
T 3ttv_A 601 RVVAILLNDE--V-RSAD-L-LAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-NIAD 674 (753)
T ss_dssp CEEEEECCTT--C-CHHH-H-HHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-CGGG
T ss_pred CEEEEEecCC--C-CHHH-H-HHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-ChHH
Confidence 6888888652 1 2222 2 36778899999998887554321 1100 112222235999999999 753
Q ss_pred -------HHHHHHHhcCcCcccccCCcEEEecCCC
Q 011517 180 -------VEVVNGLLEREDWNDAIKVPLGVVPAGT 207 (484)
Q Consensus 180 -------~evingL~~~~~~~~~~~~pigiIP~GS 207 (484)
.+.|...... .-+||.|-.|.
T Consensus 675 Lr~d~~vl~~Vre~~~~-------gKpIAAIC~Gp 702 (753)
T 3ttv_A 675 IADNGDANYYLMEAYKH-------LKPIALAGDAR 702 (753)
T ss_dssp TTTCHHHHHHHHHHHHT-------TCCEEEEGGGG
T ss_pred hhhCHHHHHHHHHHHhc-------CCeEEEECchH
Confidence 2333333332 56899987775
No 287
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=25.13 E-value=64 Score=25.85 Aligned_cols=27 Identities=11% Similarity=0.302 Sum_probs=22.9
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
.+.+.|...++++...|+++|+..+..
T Consensus 85 ~~~~~~~a~s~~e~~~Wi~al~~~~~~ 111 (125)
T 1unq_A 85 VIERTFHVETPEEREEWTTAIQTVADG 111 (125)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 457889999999999999999988653
No 288
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=25.07 E-value=52 Score=26.85 Aligned_cols=25 Identities=16% Similarity=0.320 Sum_probs=21.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+++.|...++++.+.|+++|++.+.
T Consensus 99 ~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 99 SEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4788999999999999999998763
No 289
>3he8_A Ribose-5-phosphate isomerase; CTRPI B, isomerization; 1.90A {Clostridium thermocellum} PDB: 3hee_A*
Probab=25.07 E-value=1.2e+02 Score=26.03 Aligned_cols=57 Identities=14% Similarity=0.185 Sum_probs=35.9
Q ss_pred hHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGV 202 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigi 202 (484)
+.+.++..|++.|+++.-+=| .|+.-+..+++.+..+ ....||
T Consensus 14 lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g-------------------------------~~d~GI 62 (149)
T 3he8_A 14 LKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSG-------------------------------ECDRGI 62 (149)
T ss_dssp HHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT-------------------------------SSSEEE
T ss_pred HHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC-------------------------------CCCEEE
Confidence 456889999999987755432 3344444444444322 345677
Q ss_pred ecCCCchhhhhhcc
Q 011517 203 VPAGTGNGMIKSLL 216 (484)
Q Consensus 203 IP~GSgN~~A~sl~ 216 (484)
+=||||++++-+..
T Consensus 63 liCGTGiG~siaAN 76 (149)
T 3he8_A 63 VICGTGLGISIAAN 76 (149)
T ss_dssp EEESSSHHHHHHHH
T ss_pred EEcCCcHHHHHHhh
Confidence 88888888777654
No 290
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=25.03 E-value=2.4e+02 Score=26.83 Aligned_cols=90 Identities=12% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc-CCeEEEEecCChh--HHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA-NIQFTVQETTQQL--HAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a-g~~~~v~~T~~~~--~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
++.+.+.|++.......-....|...+.-+-+.+ |+.+.++.+.... ...++.+.+...++|+||+++-+.. .+.+
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~ 144 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSVAKG-DPHI 144 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESCCTT-CHHH
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecCCCC-hHHH
Confidence 3456677777543221112223332222222222 7777777665433 2455667777778999999976433 2445
Q ss_pred HHHhcCcCcccccCCcEEEec
Q 011517 184 NGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 184 ngL~~~~~~~~~~~~pigiIP 204 (484)
..|... .+|+-++=
T Consensus 145 ~~l~~~-------~iPvV~i~ 158 (366)
T 3h5t_A 145 DAIRAR-------GLPAVIAD 158 (366)
T ss_dssp HHHHHH-------TCCEEEES
T ss_pred HHHHHC-------CCCEEEEC
Confidence 555433 57776663
No 291
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=24.99 E-value=97 Score=26.80 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=34.7
Q ss_pred hHHHH----HHhcCCeEE--EEecCChhHHHHHHHHhhcCCCceEEEEcCCCh-----HHHHHHHHh
Q 011517 132 DVKPL----LEDANIQFT--VQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI-----LVEVVNGLL 187 (484)
Q Consensus 132 ~v~p~----l~~ag~~~~--v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt-----l~evingL~ 187 (484)
.+... |++.|+++. .+.........+.++++...++|.||+.||=|. ..|++..++
T Consensus 29 ~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~~~D~t~ea~~~~~ 95 (167)
T 2g2c_A 29 LLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIRAKNQTPEATASFI 95 (167)
T ss_dssp HHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSSTTCCHHHHHHTTC
T ss_pred HHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcChHHHHHHHh
Confidence 57777 888887653 345556666666666654335999999999773 456665554
No 292
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=24.93 E-value=37 Score=27.15 Aligned_cols=44 Identities=11% Similarity=0.074 Sum_probs=33.7
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~ 152 (484)
-+++.|.++|.+|..++.+.|...--|-|+..+-++.+...+..
T Consensus 19 lk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~ 62 (102)
T 1s3a_A 19 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECS 62 (102)
T ss_dssp EEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCC
T ss_pred eeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECC
Confidence 37899999999998888777766777888888776666555554
No 293
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=24.83 E-value=45 Score=25.70 Aligned_cols=22 Identities=9% Similarity=0.584 Sum_probs=19.5
Q ss_pred eeEEeCCCCHHHHHHHHHHHHH
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRD 101 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~ 101 (484)
+.+.|...++++...|+++|++
T Consensus 84 ~~~~~~A~s~~e~~~Wi~ai~~ 105 (106)
T 1btn_A 84 NEYLFQAKDDEEMNTWIQAISS 105 (106)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhc
Confidence 5788999999999999999875
No 294
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=24.74 E-value=2.3e+02 Score=25.28 Aligned_cols=59 Identities=14% Similarity=0.047 Sum_probs=38.1
Q ss_pred HhHHHHHHhcCCe----EEEEecCChhHHHHHHHHhhc-CCCceEEEEcCCCh-----HHHHHHHHhcC
Q 011517 131 DDVKPLLEDANIQ----FTVQETTQQLHAKEIVKVLDL-SKYDGIVCVSGDGI-----LVEVVNGLLER 189 (484)
Q Consensus 131 ~~v~p~l~~ag~~----~~v~~T~~~~~a~~l~~~~~~-~~~d~IV~vGGDGt-----l~evingL~~~ 189 (484)
..+..+|++.|++ ...+.........+.++++.. .++|.||+.||=|. ..|++..++.+
T Consensus 26 ~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g~~D~T~ea~~~~~~~ 94 (195)
T 1di6_A 26 PALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADR 94 (195)
T ss_dssp HHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTCCHHHHHHHTCSE
T ss_pred HHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccHHHHHHHHhcc
Confidence 3678889988876 223444555555555555443 36999999999763 45666665543
No 295
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=24.73 E-value=1.8e+02 Score=20.22 Aligned_cols=36 Identities=11% Similarity=0.242 Sum_probs=24.3
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhH
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLH 154 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~ 154 (484)
+.++..|.++. -+++++.|++.++++..+......+
T Consensus 3 i~~y~~~~C~~-------C~~~~~~l~~~~i~~~~~di~~~~~ 38 (75)
T 1r7h_A 3 ITLYTKPACVQ-------CTATKKALDRAGLAYNTVDISLDDE 38 (75)
T ss_dssp EEEEECTTCHH-------HHHHHHHHHHTTCCCEEEETTTCHH
T ss_pred EEEEeCCCChH-------HHHHHHHHHHcCCCcEEEECCCCHH
Confidence 56676665543 2468888999999988776654333
No 296
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=24.73 E-value=2.3e+02 Score=27.46 Aligned_cols=75 Identities=8% Similarity=0.078 Sum_probs=48.0
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCC---hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQ---QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~---~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
-+++.+|++-.-|.+. . +.+...+++.|+.+...+... ..+...++.++...+.|+||+.+.......++..
T Consensus 130 w~~vaii~d~~~g~~~----~-~~~~~~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~q 204 (389)
T 3o21_A 130 WEKFVYLYDTERGFSV----L-QAIMEAAVQNNWQVTARSVGNIKDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQ 204 (389)
T ss_dssp CCEEEEEECSTTCSHH----H-HHHHHHHHHTTCEEEEEECTTCCCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHH
T ss_pred CCEEEEEEcCcHHHHH----H-HHHHHHhhcCCCeEEEEEecCCCCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH
Confidence 4788888854333322 2 456667888898776655432 2256677778777788888887665555566665
Q ss_pred Hhc
Q 011517 186 LLE 188 (484)
Q Consensus 186 L~~ 188 (484)
+.+
T Consensus 205 a~~ 207 (389)
T 3o21_A 205 VVI 207 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 297
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=24.73 E-value=69 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.339 Sum_probs=23.2
Q ss_pred EeeEEeCCCCHHHHHHHHHHHHHhhhh
Q 011517 79 RKDFVFEPLSEDSKRLWCEKLRDFIDS 105 (484)
Q Consensus 79 ~~~~~~~~~~~~~~~~w~~~l~~~~~~ 105 (484)
.+.+.|...++++.+.|+++|+..+..
T Consensus 103 ~r~~~l~A~s~~e~~~Wi~al~~~i~~ 129 (134)
T 2y7b_A 103 VTKNWLSADTKEERDLWMQKLNQVLVD 129 (134)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 357889999999999999999988753
No 298
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=24.67 E-value=3.9e+02 Score=25.74 Aligned_cols=99 Identities=11% Similarity=-0.032 Sum_probs=57.1
Q ss_pred CCHHHHHHHHHHHHHhhhhc---CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC--ChhHHHHHHHH
Q 011517 87 LSEDSKRLWCEKLRDFIDSF---GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT--QQLHAKEIVKV 161 (484)
Q Consensus 87 ~~~~~~~~w~~~l~~~~~~~---~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~--~~~~a~~l~~~ 161 (484)
.+...+....+.+....... ...+++.+|.... - -+. .+.+.++..+++.|+++...+.- ...+...++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~-~--~g~-~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~ 214 (419)
T 3h5l_A 139 PETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPG-I--YSV-NIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAK 214 (419)
T ss_dssp CTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSS-H--HHH-HHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCc-c--hhH-HHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHH
Confidence 34444555555544433221 1457888887432 1 122 23457788888889887544332 22345566677
Q ss_pred hhcCCCceEEEEcCCC-hHHHHHHHHhcC
Q 011517 162 LDLSKYDGIVCVSGDG-ILVEVVNGLLER 189 (484)
Q Consensus 162 ~~~~~~d~IV~vGGDG-tl~evingL~~~ 189 (484)
+...+.|.|++.+-.+ ....++..+.+.
T Consensus 215 i~~~~~d~v~~~~~~~~~~~~~~~~~~~~ 243 (419)
T 3h5l_A 215 LRADPPAVIVVTHFYPQDQALFMNQFMTD 243 (419)
T ss_dssp HHHSCCSEEEECCCCHHHHHHHHHHHTTS
T ss_pred HHhcCCCEEEEccccCchHHHHHHHHHHc
Confidence 7667899888876544 466677777544
No 299
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.56 E-value=61 Score=26.47 Aligned_cols=25 Identities=12% Similarity=0.145 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++++.|+++|+....
T Consensus 90 r~~~l~A~s~~e~~~Wi~al~~a~~ 114 (130)
T 2d9v_A 90 SRLHLCAETRDDAIAWKTALMEANS 114 (130)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 3688999999999999999998864
No 300
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.51 E-value=48 Score=26.57 Aligned_cols=25 Identities=8% Similarity=0.158 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++++.|+++|+....
T Consensus 80 r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 80 RVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHH
Confidence 5688999999999999999988754
No 301
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=24.46 E-value=51 Score=27.03 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.6
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
+.++|...+.++.+.|+++|+...
T Consensus 94 ~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 94 HNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 302
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=24.43 E-value=1.1e+02 Score=29.15 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=24.1
Q ss_pred cCCCceEEEEcCCChH-----HHHHHHHhcCcCcccccCCcEEEecCCCc
Q 011517 164 LSKYDGIVCVSGDGIL-----VEVVNGLLEREDWNDAIKVPLGVVPAGTG 208 (484)
Q Consensus 164 ~~~~d~IV~vGGDGtl-----~evingL~~~~~~~~~~~~pigiIP~GSg 208 (484)
...||+|++.||-|+. ++-+..++++.. ....+|+-|=.|..
T Consensus 143 ~~~yD~livPGG~g~~~~l~~~~~l~~~l~~~~---~~gk~VaaIC~Gp~ 189 (291)
T 1n57_A 143 DSEYAAIFVPGGHGALIGLPESQDVAAALQWAI---KNDRFVISLCHGPA 189 (291)
T ss_dssp TCSEEEEEECCSGGGGSSGGGCHHHHHHHHHHH---HTTCEEEEETTGGG
T ss_pred cccCCEEEecCCcchhhhhhhCHHHHHHHHHHH---HcCCEEEEECccHH
Confidence 4689999999998875 122222222211 11457777766653
No 303
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase, apoptosis, hydrolas hydrolase inhibitor complex; 2.35A {Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A 1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Probab=24.33 E-value=1.6e+02 Score=28.27 Aligned_cols=112 Identities=9% Similarity=0.007 Sum_probs=64.8
Q ss_pred hhhcCCCcEEEEEEcCCCC-------CcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhc---CCCce-EE
Q 011517 103 IDSFGRPKRLYIFVNPFGG-------KKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDL---SKYDG-IV 171 (484)
Q Consensus 103 ~~~~~~~~r~lviiNP~sG-------~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~---~~~d~-IV 171 (484)
+.-..+++++.+|||-..= .+.+...=.+.++..|+..|+++.+..=-...+..+.++++.. ..+|. |+
T Consensus 62 Y~m~~~~rg~aLIInN~~f~~~~~L~~R~G~~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l~~~~~~~h~~~d~~vv 141 (305)
T 1f1j_A 62 YNMNFEKLGKCIIINNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDHTNAACFAC 141 (305)
T ss_dssp CCCCSSEEEEEEEEECCCCCTTTTCCCCTTHHHHHHHHHHHHHHHTEEEEEEESCCHHHHHHHHHHHHHSCGGGEEEEEE
T ss_pred cccCCCCCCEEEEEechhcCCCccCccCCCcHHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHHHHHHHhhcCCCCEEEE
Confidence 4334567888888875411 1222223346899999999999988877777777777666643 24553 34
Q ss_pred EEcC----------CCh--HHHHHHHHhcCcCcccccCCcEEEecCCCchhhhhh
Q 011517 172 CVSG----------DGI--LVEVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKS 214 (484)
Q Consensus 172 ~vGG----------DGt--l~evingL~~~~~~~~~~~~pigiIP~GSgN~~A~s 214 (484)
++-| ||. +.++.+-+-......-+-++-|-+|-+=-||.+...
T Consensus 142 ~ilsHG~~~~i~g~D~~v~l~~I~~~f~~~~CpsL~gKPKlffiQACRG~~~~~g 196 (305)
T 1f1j_A 142 ILLSHGEENVIYGKDGVTPIKDLTAHFRGDRSKTLLEKPKLFFIQACRGTELDDG 196 (305)
T ss_dssp EEESCEETTEEECSSSEEEHHHHHHTTSTTTCGGGTTSCEEEEEESCCSSBCBCC
T ss_pred EEecCCCCCeEEecCCeEEHHHHHHHhhhccChhhcCCceEEEeccccCCcccCC
Confidence 4433 442 344444332211111123566888888777776553
No 304
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=24.29 E-value=1.6e+02 Score=25.36 Aligned_cols=61 Identities=7% Similarity=0.143 Sum_probs=43.1
Q ss_pred cEEEEEEcCCC---CCcchhhch--------HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 110 KRLYIFVNPFG---GKKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 110 ~r~lviiNP~s---G~~~a~~~~--------~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++++|+-=|.- |++. ..+| ++.++..-.+.|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 8 ~~IlvlNGPNLNlLG~RE-P~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiI 79 (153)
T 3lwz_A 8 FHILLLNGPNLNLLGTRE-PEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQAR-GNTDFILI 79 (153)
T ss_dssp EEEEEEECTTGGGTTTSS-HHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHT-TTCSEEEE
T ss_pred CeEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCceEEE
Confidence 46788777763 2222 2233 4455666666899999999999999988888864 57888886
No 305
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=24.18 E-value=3e+02 Score=27.39 Aligned_cols=67 Identities=13% Similarity=0.081 Sum_probs=48.7
Q ss_pred hhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcC
Q 011517 102 FIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSG 175 (484)
Q Consensus 102 ~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGG 175 (484)
.+......+++-||+|..+|++.-. +. ++++.+|+++|.++-++.....+-++ | .+. ..|..|.+|=
T Consensus 257 ~I~kA~dA~~~GIIvgTLg~Q~~~~-~~-~~L~~ll~~~Gkk~y~i~vg~inp~K-L---anF-~iD~fV~vaC 323 (378)
T 3lzd_A 257 QIAKAMDAKKFGVIVSIKKGQLRLA-EA-KRIVKLLKKHGREARLIVMNDVNYHK-L---EGF-PFEAYVVVAC 323 (378)
T ss_dssp HHHHHTTCCEEEEEEECSTTTCCHH-HH-HHHHHHHHHTTCEEEEEEESSCCHHH-H---TTS-CCSEEEECSC
T ss_pred HHHHHhcCCEEEEEEeCCccCCCHH-HH-HHHHHHHHHcCCcEEEEEeCCCCHHH-H---hCC-CCCEEEEecC
Confidence 3445567889999999999987644 34 68999999999998887777766543 1 122 4787776653
No 306
>3ph3_A Ribose-5-phosphate isomerase; alpha-beta-alpha sandwich fold; HET: RB5; 2.07A {Clostridium thermocellum} SCOP: c.121.1.1 PDB: 3ph4_A*
Probab=24.15 E-value=1.3e+02 Score=26.51 Aligned_cols=71 Identities=14% Similarity=0.154 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
+.| .+|-+-++|- -+.+.++..|++.|+++.-+=| .|+.-+..+++.+...
T Consensus 20 ~Mk-IaIgsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g----------------- 76 (169)
T 3ph3_A 20 HMK-IGIGSDHGGY-----NLKREIADFLKKRGYEVIDFGTHGNESVDYPDFGLKVAEAVKSG----------------- 76 (169)
T ss_dssp -CE-EEEEECGGGH-----HHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT-----------------
T ss_pred CCE-EEEEeCchHH-----HHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcC-----------------
Confidence 344 5566777663 2456889999999987755432 2344444444444322
Q ss_pred HHHHhcCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 183 VNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 183 ingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 77 --------------~~d~GIliCGTGiG~sIaAN 96 (169)
T 3ph3_A 77 --------------ECDRGIVICGTGLGISIAAN 96 (169)
T ss_dssp --------------SSSEEEEEESSSHHHHHHHT
T ss_pred --------------CCCEEEEEcCCcHHHHHHhh
Confidence 34567788888888877654
No 307
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=24.14 E-value=1.1e+02 Score=26.73 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=37.3
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
+++||=|..| |...+...|++.|+++.++.... ...++.+.+.....+.+|+.||-|+..+
T Consensus 2 ~i~iiDn~~s--------~~~~i~~~l~~~G~~~~v~~~~~--~~~~i~~~l~~~~~~~iil~gGpg~~~~ 62 (192)
T 1i1q_B 2 DILLLDNIDS--------FTWNLADQLRTNGHNVVIYRNHI--PAQTLIDRLATMKNPVLMLSPGPGVPSE 62 (192)
T ss_dssp EEEEEECSCS--------SHHHHHHHHHHTTCEEEEEETTS--CSHHHHHHHTTCSSEEEEECCCSSCGGG
T ss_pred cEEEEECCcc--------HHHHHHHHHHHCCCeEEEEECCC--CHHHHHHHhhhccCCeEEECCCCcCchh
Confidence 5677776554 22356677888898887765442 1233433333223556999999988653
No 308
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=24.07 E-value=2.3e+02 Score=24.45 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhh-cCCCceEEEEc--CCCh-----H
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLD-LSKYDGIVCVS--GDGI-----L 179 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~-~~~~d~IV~vG--GDGt-----l 179 (484)
.|+.|++-.+-- .+.. +-....|..+|.+.++ +..-..-+.--.++.+. ..+||+||+.| |+-. -
T Consensus 3 ~ri~IV~arfn~----~~Ll-~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~VG~T~Hfd~Va 77 (156)
T 2b99_A 3 KKVGIVDTTFAR----VDMA-SIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMPGKAEKDKVCA 77 (156)
T ss_dssp CEEEEEEESSCS----SCCH-HHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECCCSSHHHHHHH
T ss_pred cEEEEEEEecch----HHHH-HHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccCCcchhHHHH
Confidence 367777766544 2333 4566677888865433 44444444444445543 36899999877 4333 2
Q ss_pred HHHHHHHhcC
Q 011517 180 VEVVNGLLER 189 (484)
Q Consensus 180 ~evingL~~~ 189 (484)
+|+..||++-
T Consensus 78 ~~vs~Gl~~v 87 (156)
T 2b99_A 78 HEASLGLMLA 87 (156)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3556666553
No 309
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=24.05 E-value=69 Score=28.85 Aligned_cols=65 Identities=17% Similarity=0.244 Sum_probs=43.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
.+-..+-+=|+|.+|+=- .+.-=+|.+|++.|+++.- -.|+-. +..++|.++++|--= ++|-.
T Consensus 75 ~~G~~V~faIHPVAGRMP------GhMNVLLAEA~VPYd~v~E-----MdeIN~--df~~tDv~lVIGAND----vVNPa 137 (203)
T 2fsv_C 75 KEGVEVSYAIHPVAGRMP------GHMNVLLAEANVPYDEVFE-----LEEINS--SFQTADVAFVIGAND----VTNPA 137 (203)
T ss_dssp HTTCEEEEEECTTCSSST------THHHHHHHHTTCCGGGEEE-----HHHHGG--GSTTCSEEEEESCCG----GGCGG
T ss_pred HcCCeEEEEecccccCCC------CCccEEEEEecCCHHHHhh-----HHHHhh--hhhhcCEEEEecccc----ccCch
Confidence 356788899999999743 4566689999999874331 112222 245899999999654 45544
Q ss_pred hc
Q 011517 187 LE 188 (484)
Q Consensus 187 ~~ 188 (484)
..
T Consensus 138 A~ 139 (203)
T 2fsv_C 138 AK 139 (203)
T ss_dssp GT
T ss_pred hh
Confidence 43
No 310
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=24.05 E-value=97 Score=28.08 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=33.9
Q ss_pred HhHHHHHHhcCCeEEEEecCC-hhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecC
Q 011517 131 DDVKPLLEDANIQFTVQETTQ-QLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~-~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~ 205 (484)
+-++..+++.|+++.+..+.. .....+..+.+...++|+||+.+.+.+ .+.+..+.. .++|+-.+-.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~~~-------~~iPvV~~~~ 86 (276)
T 2h0a_A 19 EGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT-ERFEEGRLP-------TERPVVLVDA 86 (276)
T ss_dssp HHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC-------CCS-------CSSCEEEESS
T ss_pred HHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHhh-------cCCCEEEEec
Confidence 466777777888776654432 122234556665578999999998765 234433322 2678776633
No 311
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=23.88 E-value=81 Score=29.24 Aligned_cols=14 Identities=29% Similarity=0.593 Sum_probs=12.2
Q ss_pred CCCceEEEEcCCCh
Q 011517 165 SKYDGIVCVSGDGI 178 (484)
Q Consensus 165 ~~~d~IV~vGGDGt 178 (484)
.+||+||+.||.|.
T Consensus 106 ~~~D~livPGG~~~ 119 (242)
T 3l3b_A 106 EEFDMLVIPGGYGV 119 (242)
T ss_dssp GGCSEEEECCCHHH
T ss_pred ccCCEEEEcCCcch
Confidence 57999999999875
No 312
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=23.86 E-value=1.9e+02 Score=23.15 Aligned_cols=83 Identities=8% Similarity=0.090 Sum_probs=47.5
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
..+.+++++.+ +| -+...+.++++...++.|+++++..+.... +. +. .++||.|++.-==.-..+=+...
T Consensus 4 ~~~mkIlL~C~--aG--mSTsllv~km~~~a~~~gi~v~i~a~~~~~-~~----~~-~~~~DvvLLgPQV~y~~~~ik~~ 73 (108)
T 3nbm_A 4 SKELKVLVLCA--GS--GTSAQLANAINEGANLTEVRVIANSGAYGA-HY----DI-MGVYDLIILAPQVRSYYREMKVD 73 (108)
T ss_dssp -CCEEEEEEES--SS--SHHHHHHHHHHHHHHHHTCSEEEEEEETTS-CT----TT-GGGCSEEEECGGGGGGHHHHHHH
T ss_pred ccCceEEEECC--CC--CCHHHHHHHHHHHHHHCCCceEEEEcchHH-HH----hh-ccCCCEEEEChHHHHHHHHHHHH
Confidence 34567888875 33 233457789999999999999886533321 11 11 24688877621111122223333
Q ss_pred hcCcCcccccCCcEEEecC
Q 011517 187 LEREDWNDAIKVPLGVVPA 205 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~ 205 (484)
... ..+|+.+||.
T Consensus 74 ~~~------~~ipV~vI~~ 86 (108)
T 3nbm_A 74 AER------LGIQIVATRG 86 (108)
T ss_dssp HTT------TTCEEEECCH
T ss_pred hhh------cCCcEEEeCH
Confidence 322 2689999985
No 313
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=23.72 E-value=1.1e+02 Score=26.84 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=33.3
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
+|+.|+-+ .| .|. .....|+++|+++.++.. . ++ +.++|+||+-||-++..+
T Consensus 2 m~I~il~~--~~------~~~-~~~~~l~~~g~~~~~~~~--~-------~~--l~~~d~iil~GG~~~~~~ 53 (196)
T 2nv0_A 2 LTIGVLGL--QG------AVR-EHIHAIEACGAAGLVVKR--P-------EQ--LNEVDGLILPGGESTTMR 53 (196)
T ss_dssp CEEEEECS--SS------CCH-HHHHHHHHTTCEEEEECS--G-------GG--GGGCSEEEECCSCHHHHH
T ss_pred cEEEEEEc--cC------CcH-HHHHHHHHCCCEEEEeCC--h-------HH--HhhCCEEEECCCChhhHH
Confidence 46777765 22 233 334778889987766532 1 12 347999999999877654
No 314
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=23.72 E-value=46 Score=26.87 Aligned_cols=27 Identities=4% Similarity=0.190 Sum_probs=22.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
+.+.|...++++.+.|+++|+..+...
T Consensus 96 ~~~~l~a~s~~e~~~Wi~al~~~~~~~ 122 (129)
T 1x05_A 96 VHYFLQAATPKERTEWIKAIQMASRTG 122 (129)
T ss_dssp CCCEEECSSHHHHHHHHHHHHHHHTCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHcc
Confidence 457888899999999999999987643
No 315
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=23.57 E-value=33 Score=32.16 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=38.2
Q ss_pred CcEEEEEEcCC-CCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 109 PKRLYIFVNPF-GGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 109 ~~r~lviiNP~-sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
.|+++||-|.. .+. ..+.+.|++.|++++++.....+. +- .+..++|+||+-||-++.+
T Consensus 3 ~~~vliiqh~~~e~~--------~~i~~~l~~~G~~v~v~~~~~~~~---~p--~~~~~~d~lIl~GGp~~~~ 62 (250)
T 3m3p_A 3 LKPVMIIQFSASEGP--------GHFGDFLAGEHIPFQVLRMDRSDP---LP--AEIRDCSGLAMMGGPMSAN 62 (250)
T ss_dssp CCCEEEEESSSSCCC--------HHHHHHHHHTTCCEEEEEGGGTCC---CC--SCGGGSSEEEECCCSSCTT
T ss_pred CCeEEEEECCCCCCH--------HHHHHHHHHCCCeEEEEeccCCCc---Cc--CccccCCEEEECCCCCccc
Confidence 46788888754 332 356777999999988876422110 00 1235799999999987643
No 316
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=23.33 E-value=1.3e+02 Score=26.50 Aligned_cols=47 Identities=15% Similarity=-0.039 Sum_probs=32.9
Q ss_pred HhHHHHHHhcCCeEEE--EecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 131 DDVKPLLEDANIQFTV--QETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v--~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
..+...|.+.|+++.. +.........+.++++. +++|.||+.||=|-
T Consensus 26 ~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~-~~~DlVittGG~g~ 74 (172)
T 3kbq_A 26 AFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVAL-EVSDLVVSSGGLGP 74 (172)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHH-HHCSEEEEESCCSS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHH-hcCCEEEEcCCCcC
Confidence 3688899999987643 34455556565555543 35899999999773
No 317
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=23.25 E-value=1.2e+02 Score=27.01 Aligned_cols=70 Identities=13% Similarity=0.157 Sum_probs=45.4
Q ss_pred HhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEecCCCchh
Q 011517 131 DDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAGTGNG 210 (484)
Q Consensus 131 ~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP~GSgN~ 210 (484)
+.++.++.+.+.++++.. ..-+.+.+.++++ ..++|.||+-||=+. +++. ...+|+--||. |+.|
T Consensus 18 ~~~~~i~~e~~~~i~i~~-~~l~~~v~~a~~~-~~~~dVIISRGgta~-------~lr~-----~~~iPVV~I~~-s~~D 82 (196)
T 2q5c_A 18 NLFPKLALEKNFIPITKT-ASLTRASKIAFGL-QDEVDAIISRGATSD-------YIKK-----SVSIPSISIKV-TRFD 82 (196)
T ss_dssp HHHHHHHHHHTCEEEEEE-CCHHHHHHHHHHH-TTTCSEEEEEHHHHH-------HHHT-----TCSSCEEEECC-CHHH
T ss_pred HHHHHHHhhhCCceEEEE-CCHHHHHHHHHHh-cCCCeEEEECChHHH-------HHHH-----hCCCCEEEEcC-CHhH
Confidence 345555555566777654 4467788999998 788999999988552 2222 13678877775 3445
Q ss_pred hhhhc
Q 011517 211 MIKSL 215 (484)
Q Consensus 211 ~A~sl 215 (484)
+-++|
T Consensus 83 il~al 87 (196)
T 2q5c_A 83 TMRAV 87 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 318
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=23.23 E-value=2.2e+02 Score=20.82 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=33.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHh-hcCCCceE
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVL-DLSKYDGI 170 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~-~~~~~d~I 170 (484)
.++.++..|..+.- ++++++|++.++++..+... .....++.+.. .....-.|
T Consensus 6 ~~v~~y~~~~C~~C-------~~~~~~L~~~~i~~~~vdv~-~~~~~~l~~~~~~~~~vP~l 59 (89)
T 2klx_A 6 KEIILYTRPNCPYC-------KRARDLLDKKGVKYTDIDAS-TSLRQEMVQRANGRNTFPQI 59 (89)
T ss_dssp CCEEEESCSCCTTT-------HHHHHHHHHHTCCEEEECSC-HHHHHHHHHHHHSSCCSCEE
T ss_pred ceEEEEECCCChhH-------HHHHHHHHHcCCCcEEEECC-HHHHHHHHHHhCCCCCcCEE
Confidence 45777777776642 46788898899998887766 44445565554 33333344
No 319
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=23.17 E-value=1e+02 Score=29.83 Aligned_cols=70 Identities=13% Similarity=-0.035 Sum_probs=43.3
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
..-+.|+-+|..-.|++.+....-|+..-.++|+.+. ..+..... +..+.+...++|.||++|=--.|.+
T Consensus 28 ~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~~~gIpv~--~~~~~~~~-~~~~~l~~~~~Dliv~~~y~~ilp~ 97 (317)
T 3rfo_A 28 YDVIGVVTQPDRPVGRKKVLTPTPVKVEAEKHGIPVL--QPLRIREK-DEYEKVLALEPDLIVTAAFGQIVPN 97 (317)
T ss_dssp CEEEEEECCCCCEETTTTEECCCHHHHHHHHTTCCEE--CCSCTTSH-HHHHHHHHHCCSEEEESSCCSCCCH
T ss_pred CcEEEEEeCCCcccCCCcccCCCHHHHHHHHcCCCEE--ccccCCCH-HHHHHHHhcCCCEEEEcCchhhCCH
Confidence 4557788899876666655555678888888998853 33322211 2233443347899998875445543
No 320
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=23.08 E-value=1.4e+02 Score=26.43 Aligned_cols=62 Identities=11% Similarity=0.006 Sum_probs=32.8
Q ss_pred CcEEEEEEcCCCCCc--chhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 109 PKRLYIFVNPFGGKK--IASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 109 ~~r~lviiNP~sG~~--~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.|-+.|.-+|..... .-.+...+.+...++++|.+++++......+..++.+++. ..|+||+
T Consensus 13 ~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~--~AD~iV~ 76 (204)
T 2amj_A 13 SNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL--WADVVIW 76 (204)
T ss_dssp CEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH--HCSEEEE
T ss_pred cCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHH--hCCEEEE
Confidence 344556667873321 2222344677777888888888877654334444444443 3455554
No 321
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=22.85 E-value=2.1e+02 Score=25.08 Aligned_cols=39 Identities=23% Similarity=0.241 Sum_probs=25.1
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHH
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEV 182 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ev 182 (484)
.+...|+++|.++.++.. . . ++.++|+||+-| =|.....
T Consensus 17 ~~~~~l~~~G~~~~~~~~--~-------~--~l~~~d~lil~G-~g~~~~~ 55 (200)
T 1ka9_H 17 SAAKALEAAGFSVAVAQD--P-------K--AHEEADLLVLPG-QGHFGQV 55 (200)
T ss_dssp HHHHHHHHTTCEEEEESS--T-------T--SCSSCSEEEECC-CSCHHHH
T ss_pred HHHHHHHHCCCeEEEecC--h-------H--HcccCCEEEECC-CCcHHHH
Confidence 456778889988877642 1 1 345799999944 4544443
No 322
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.75 E-value=60 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFI 103 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~ 103 (484)
+.+.|...++++.+.|+++|+..+
T Consensus 96 r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 96 RTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHH
Confidence 568899999999999999998875
No 323
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=22.69 E-value=61 Score=28.55 Aligned_cols=59 Identities=15% Similarity=0.251 Sum_probs=40.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGIL 179 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl 179 (484)
+-..+-+=|.|.+|+=- .++-=+|.+|++.|+++.- -.|+-.+ ..++|.++++|---|+
T Consensus 53 ~G~~V~faIHPVAGRMP------GhmNVLLAEA~VPYd~v~E-----MdeIN~d--f~~tDv~lVIGANDvv 111 (180)
T 1pno_A 53 EGVEVSYAIHPVAGRMP------GHMNVLLAEANVPYDEVFE-----LEEINSS--FQTADVAFVIGANDVT 111 (180)
T ss_dssp TTCEEEEEECTTCTTST------THHHHHHHHTTCCGGGEEE-----HHHHGGG--GGGCSEEEEESCCGGG
T ss_pred CCCeEEEEeccccccCC------CcceEEEEeeCCCHHHHhh-----HHHHhhh--hhhcCEEEEecccccc
Confidence 56788899999999743 4566689999999984321 1222222 3478999999965443
No 324
>1o1x_A Ribose-5-phosphate isomerase RPIB; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: c.121.1.1
Probab=22.51 E-value=1.5e+02 Score=25.75 Aligned_cols=67 Identities=21% Similarity=0.218 Sum_probs=41.0
Q ss_pred EEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEec------CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHh
Q 011517 114 IFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQET------TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLL 187 (484)
Q Consensus 114 viiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T------~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~ 187 (484)
+|=+-++|- .+.+.++..|++.|+++.-+-| .|+.-+..+++.+..+
T Consensus 16 ~igsDhaG~-----~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYpd~a~~va~~V~~g---------------------- 68 (155)
T 1o1x_A 16 AIASDHAAF-----ELKEKVKNYLLGKGIEVEDHGTYSEESVDYPDYAKKVVQSILSN---------------------- 68 (155)
T ss_dssp EEEECSTTH-----HHHHHHHHHHHHTTCEEEECCCCSSSCCCHHHHHHHHHHHHHTT----------------------
T ss_pred EEeeCchHH-----HHHHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHHHcC----------------------
Confidence 344455553 2457889999999987755433 2344444444443322
Q ss_pred cCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 188 EREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 188 ~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 69 ---------~~d~GIliCGTGiG~siaAN 88 (155)
T 1o1x_A 69 ---------EADFGILLCGTGLGMSIAAN 88 (155)
T ss_dssp ---------SCSEEEEEESSSHHHHHHHT
T ss_pred ---------CCceEEEEcCCcHHHHHHhh
Confidence 34578888888888887764
No 325
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=22.48 E-value=3.6e+02 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=23.2
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT 150 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~ 150 (484)
++..|+|+++|-||.. ..-.+...|...|.++-++...
T Consensus 3 ~~I~v~s~kgGvGKTt--~a~~LA~~la~~g~~VlliD~D 40 (263)
T 1hyq_A 3 RTITVASGKGGTGKTT--ITANLGVALAQLGHDVTIVDAD 40 (263)
T ss_dssp EEEEEEESSSCSCHHH--HHHHHHHHHHHTTCCEEEEECC
T ss_pred eEEEEECCCCCCCHHH--HHHHHHHHHHhCCCcEEEEECC
Confidence 4666777777777654 2235666666666666555544
No 326
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=22.43 E-value=65 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.126 Sum_probs=34.4
Q ss_pred CcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 109 PKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 109 ~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
.++++|+.++.+-. . + .+...|+.+|+++.++... + +..++|+||+.||-++
T Consensus 2 ~~~i~il~~~~~~~---~--~--~~~~~l~~~g~~~~~~~~~----------~-~~~~~d~lil~Gg~~~ 53 (213)
T 3d54_D 2 KPRACVVVYPGSNC---D--R--DAYHALEINGFEPSYVGLD----------D-KLDDYELIILPGGFSY 53 (213)
T ss_dssp CCEEEEECCTTEEE---H--H--HHHHHHHTTTCEEEEECTT----------C-CCSSCSEEEECEECGG
T ss_pred CcEEEEEEcCCCCc---c--H--HHHHHHHHCCCEEEEEecC----------C-CcccCCEEEECCCCch
Confidence 46788888774321 0 1 3577888899887776432 1 3467999999998653
No 327
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=22.10 E-value=2.9e+02 Score=26.96 Aligned_cols=82 Identities=12% Similarity=0.169 Sum_probs=45.1
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGL 186 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL 186 (484)
++.+.+.|++ |.+.. -...++ +-++..+++.|+.+.+..++.... ..+.+...+.|+||+...+ .+++..|
T Consensus 23 ~~s~~Igvv~-~~~~~-f~~~l~-~gi~~~a~~~g~~~~i~~~~~~~~---~i~~l~~~~vDGiIi~~~~---~~~~~~l 93 (412)
T 4fe7_A 23 TKRHRITLLF-NANKA-YDRQVV-EGVGEYLQASQSEWDIFIEEDFRA---RIDKIKDWLGDGVIADFDD---KQIEQAL 93 (412)
T ss_dssp CCCEEEEEEC-CTTSH-HHHHHH-HHHHHHHHHHTCCEEEEECC-CC-----------CCCSEEEEETTC---HHHHHHH
T ss_pred CCCceEEEEe-CCcch-hhHHHH-HHHHHHHHhcCCCeEEEecCCccc---hhhhHhcCCCCEEEEecCC---hHHHHHH
Confidence 4566788888 52221 112233 467777888899888877655432 3445555689999984332 3455555
Q ss_pred hcCcCcccccCCcEEEec
Q 011517 187 LEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP 204 (484)
... ++|+-.+=
T Consensus 94 ~~~-------~iPvV~i~ 104 (412)
T 4fe7_A 94 ADV-------DVPIVGVG 104 (412)
T ss_dssp TTC-------CSCEEEEE
T ss_pred hhC-------CCCEEEec
Confidence 443 67776663
No 328
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=22.01 E-value=83 Score=30.34 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=35.7
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEE--EecCC---hhHHHHH-------HHHhhcCCCceEEEEc
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTV--QETTQ---QLHAKEI-------VKVLDLSKYDGIVCVS 174 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v--~~T~~---~~~a~~l-------~~~~~~~~~d~IV~vG 174 (484)
-||.|+.|+-. --.+ ..++.++..+|.....++++ +.+.. .....+. ..+....+||++|+-|
T Consensus 33 irplkI~ILnl-mp~k----~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG 107 (301)
T 2vdj_A 33 IRALKIAILNL-MPTK----QETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITG 107 (301)
T ss_dssp SCCEEEEEECC-CSSH----HHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECC
T ss_pred CCCceEEEEeC-CCCc----CchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECC
Confidence 46777665543 2222 23667888888877765554 33321 1111111 2233346899999999
Q ss_pred CC
Q 011517 175 GD 176 (484)
Q Consensus 175 GD 176 (484)
|=
T Consensus 108 ap 109 (301)
T 2vdj_A 108 AP 109 (301)
T ss_dssp CT
T ss_pred CC
Confidence 85
No 329
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.96 E-value=55 Score=26.33 Aligned_cols=25 Identities=12% Similarity=0.430 Sum_probs=21.9
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 r~~~l~a~s~~e~~~Wi~al~~~~~ 124 (129)
T 1x1g_A 100 THYYIQASSKAERAEWIEAIKKLTS 124 (129)
T ss_dssp CCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999998864
No 330
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=21.93 E-value=2.8e+02 Score=21.48 Aligned_cols=36 Identities=11% Similarity=0.385 Sum_probs=25.9
Q ss_pred cEEEEEEc-----CCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh
Q 011517 110 KRLYIFVN-----PFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ 152 (484)
Q Consensus 110 ~r~lviiN-----P~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~ 152 (484)
.++.|+.. |..+ |-.+++++|+..+++|+.+.....
T Consensus 15 ~~vvvy~~g~~~~~~Cp-------~C~~ak~~L~~~~i~~~~vdi~~~ 55 (109)
T 1wik_A 15 ASVMLFMKGNKQEAKCG-------FSKQILEILNSTGVEYETFDILED 55 (109)
T ss_dssp SSEEEEESSTTTCCCSS-------THHHHHHHHHHTCSCEEEEESSSC
T ss_pred CCEEEEEecCCCCCCCc-------hHHHHHHHHHHcCCCeEEEECCCC
Confidence 45888877 5544 346888999999999987766543
No 331
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=21.90 E-value=2.8e+02 Score=21.68 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=43.8
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh---cCCCceEEEE----cCCChHHHHHHHHhcCcCcccccCCcEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD---LSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPLG 201 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~---~~~~d~IV~v----GGDGtl~evingL~~~~~~~~~~~~pig 201 (484)
....++.+|+..|..+.+.......+|.+.+++.. ...+|.|++- +.|| -+++..|..... ...+|+-
T Consensus 19 ~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g--~~~~~~l~~~~~---~~~~~ii 93 (143)
T 2qvg_A 19 DIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNG--IEFLKELRDDSS---FTDIEVF 93 (143)
T ss_dssp HHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCH--HHHHHHHTTSGG---GTTCEEE
T ss_pred HHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCH--HHHHHHHHcCcc---ccCCcEE
Confidence 44678888988887445556677777766655421 1468888875 3344 477777765421 1256766
Q ss_pred EecC
Q 011517 202 VVPA 205 (484)
Q Consensus 202 iIP~ 205 (484)
++-.
T Consensus 94 ~ls~ 97 (143)
T 2qvg_A 94 VLTA 97 (143)
T ss_dssp EEES
T ss_pred EEeC
Confidence 6544
No 332
>1h05_A 3-dehydroquinate dehydratase; shikimate pathway, alpha/beta protein, lyase, aromatic amino acid biosynthesis; 1.5A {Mycobacterium tuberculosis} SCOP: c.23.13.1 PDB: 1h0r_A* 1h0s_A* 2dhq_A 2xb8_A* 2y71_A* 2y76_A* 2y77_A* 3n76_A* 3n7a_A* 3n86_A* 3n87_A* 3n8n_A*
Probab=21.79 E-value=1.5e+02 Score=25.47 Aligned_cols=43 Identities=2% Similarity=0.117 Sum_probs=33.5
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++.++....+.|++++.+.+.+.++..+..++.. +++|+||+
T Consensus 32 i~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~-~~~dgiiI 74 (146)
T 1h05_A 32 LVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVIL 74 (146)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEE
T ss_pred HHHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEE
Confidence 34566666677899999999999999888888775 34788775
No 333
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=21.79 E-value=1.3e+02 Score=26.47 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=35.8
Q ss_pred EEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHH
Q 011517 112 LYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVE 181 (484)
Q Consensus 112 ~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~e 181 (484)
++||=|..|- ...+...|+++|.++.++.... .... +++..++|+||+-||-|+..+
T Consensus 4 i~iid~~~s~--------~~~~~~~l~~~G~~~~v~~~~~-~~~~----~~~~~~~dglil~gG~~~~~~ 60 (195)
T 1qdl_B 4 TLIIDNYDSF--------VYNIAQIVGELGSYPIVIRNDE-ISIK----GIERIDPDRLIISPGPGTPEK 60 (195)
T ss_dssp EEEEECSCSS--------HHHHHHHHHHTTCEEEEEETTT-SCHH----HHHHHCCSEEEECCCSSCTTS
T ss_pred EEEEECCCch--------HHHHHHHHHhCCCEEEEEeCCC-CCHH----HHhhCCCCEEEECCCCCChhh
Confidence 6777765443 2356678888999888876542 1122 222226899999898765443
No 334
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=21.76 E-value=2e+02 Score=29.10 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE
Q 011517 92 KRLWCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ 147 (484)
Q Consensus 92 ~~~w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~ 147 (484)
...+.+.+.+.++..-+.+. .|+++|..|.+. ..+..+|++.|+++..+
T Consensus 154 ~~~Y~~~l~~~~~~~i~~~~-kivvD~~nG~~~------~~~~~ll~~lG~~v~~~ 202 (443)
T 3i3w_A 154 IDEYIESIYSRFAKFVNYKG-KVVVDCAHGAAS------HNFEALLDKFGINYVSI 202 (443)
T ss_dssp THHHHHHHHHHHTTTCCCCS-EEEEECTTSTTT------THHHHHHHHTTCEEEES
T ss_pred HHHHHHHHHHhCchhhccCC-eEEEECCCChHH------HHHHHHHHHcCCEEEEE
Confidence 45677777777653213345 899999888654 24566788888876653
No 335
>3c5y_A Ribose/galactose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.81A {Novosphingobium aromaticivorans}
Probab=21.66 E-value=1.1e+02 Score=28.32 Aligned_cols=74 Identities=9% Similarity=0.046 Sum_probs=42.8
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecC---------ChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETT---------QQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~---------~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+++.+ +|-.|-.++-. +..+.++..|+..|+++.-+=|. |+.-+..+++.+..+
T Consensus 20 mkial-i~~~sqa~kN~-~lKe~i~~~L~~~G~eV~D~G~~s~~d~~svDYPd~a~~vA~~V~~g--------------- 82 (231)
T 3c5y_A 20 MKIAL-IIENSQAAKNA-VVHEALTTVAEPLGHKVFNYGMYTAEDKASLTYVMNGLLAGILLNSG--------------- 82 (231)
T ss_dssp CEEEE-CCCGGGGGGHH-HHHHHHHHHHGGGTCEEEECCCCSTTCSSCCCHHHHHHHHHHHHHHT---------------
T ss_pred ceEEE-EecCCHhhhHH-HHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCChHHHHHHHHHHHHcC---------------
Confidence 44544 44444443322 34478999999999887655332 344444444443322
Q ss_pred HHHHHHhcCcCcccccCCcEEEecCCCchhhhhhcc
Q 011517 181 EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIKSLL 216 (484)
Q Consensus 181 evingL~~~~~~~~~~~~pigiIP~GSgN~~A~sl~ 216 (484)
....||+=||||++++-+..
T Consensus 83 ----------------~~d~GIliCGTGiG~sIAAN 102 (231)
T 3c5y_A 83 ----------------AADFVVTGCGTGMGSMLAAN 102 (231)
T ss_dssp ----------------SCSEEEEEESSSHHHHHHHH
T ss_pred ----------------CCCeEEEEcCCcHHHHHHHh
Confidence 34567777888887776654
No 336
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=21.66 E-value=3.7e+02 Score=25.56 Aligned_cols=78 Identities=21% Similarity=0.147 Sum_probs=48.7
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhc--CCeEEEEec--CChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDA--NIQFTVQET--TQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~a--g~~~~v~~T--~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
..+|+.+|. +...- +.. ..+.++..|++. |+++..... ....+....++++...+.|.|++.+-+.....++
T Consensus 141 g~~~vaii~-~~~~~--g~~-~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~ 216 (387)
T 3i45_A 141 PITRWATIA-PNYEY--GQS-AVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFV 216 (387)
T ss_dssp SCCEEEEEC-CSSHH--HHH-HHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHH
T ss_pred CCCeEEEEe-CCchH--hHH-HHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHH
Confidence 347888776 32222 222 235677788888 776543322 2223556666777667899999988877777787
Q ss_pred HHHhcC
Q 011517 184 NGLLER 189 (484)
Q Consensus 184 ngL~~~ 189 (484)
..+.+.
T Consensus 217 ~~~~~~ 222 (387)
T 3i45_A 217 REGRVR 222 (387)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 777554
No 337
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=21.58 E-value=3.2e+02 Score=23.22 Aligned_cols=71 Identities=13% Similarity=0.033 Sum_probs=41.2
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHH
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVV 183 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~evi 183 (484)
++..++ |+..|.+ . ...+-.+.+.-+|+.+|+++.. ....-...++++.+...++|.|.+.+=+++-.+.+
T Consensus 16 ~~~~~v-lla~~~g-d--~HdiG~~~va~~l~~~G~eVi~--lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~~~ 86 (161)
T 2yxb_A 16 RRRYKV-LVAKMGL-D--GHDRGAKVVARALRDAGFEVVY--TGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLHLM 86 (161)
T ss_dssp CCSCEE-EEEEESS-S--SCCHHHHHHHHHHHHTTCEEEC--CCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHHHH
T ss_pred CCCCEE-EEEeCCC-C--ccHHHHHHHHHHHHHCCCEEEE--CCCCCCHHHHHHHHHhcCCCEEEEEeechhhHHHH
Confidence 344444 4444533 2 2223335788899999976543 33333445566666556889888888777643333
No 338
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=21.58 E-value=2.2e+02 Score=25.04 Aligned_cols=62 Identities=5% Similarity=0.153 Sum_probs=43.1
Q ss_pred CcEEEEEEcCCC---CCcchhhch--------HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 109 PKRLYIFVNPFG---GKKIASKIF--------LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 109 ~~r~lviiNP~s---G~~~a~~~~--------~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
.++++||-=|.- |++. ..+| ++.++..-.+.|++++.+.+.+.++..+...+.. +++|+||+
T Consensus 28 ~M~IlVLNGPNLNlLG~RE-P~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~-~~~dgIII 100 (172)
T 3n8k_A 28 ELIVNVINGPNLGRLGRRE-PAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAA-DAAEPVIL 100 (172)
T ss_dssp -CEEEEEECTTGGGTTTSC-HHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHH-HHTCCEEE
T ss_pred cCEEEEEcCCCccccCCCC-CCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhh-hcCcEEEE
Confidence 357888887763 2222 2233 4456666666899999999999999888888764 45788775
No 339
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=21.54 E-value=1.1e+02 Score=24.34 Aligned_cols=53 Identities=15% Similarity=0.337 Sum_probs=33.4
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEE
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVC 172 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~ 172 (484)
++++++. |.|-+.....++++..+++.|+++++..+.-.. +.+.. +++|.|++
T Consensus 4 kkIll~C----g~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~-~~~~~-----~~~Dvil~ 56 (106)
T 1e2b_A 4 KHIYLFS----SAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETL-AGEKG-----QNADVVLL 56 (106)
T ss_dssp EEEEEEC----SSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSS-TTHHH-----HHCSEEEE
T ss_pred cEEEEEC----CCchhHHHHHHHHHHHHHHCCCCeEEEEecHHH-HHhhc-----cCCCEEEE
Confidence 4666665 333344467789999999999999886655432 22222 34775553
No 340
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=21.52 E-value=1.6e+02 Score=25.64 Aligned_cols=79 Identities=20% Similarity=0.293 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC-eEEEEecCChhHHHHHHHHhhcCCCceEEEEc----CCCh----
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI-QFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS----GDGI---- 178 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~-~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG----GDGt---- 178 (484)
.+.|+.|+.-.+--. -..+.. +-....|..+|. +++++..-..-+.--.++.+.. +||+||+.| |+-.
T Consensus 16 ~~~ri~IV~arfn~~-I~~~Ll-~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~-~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 16 SGVRLAIVASSWHGK-ICDALL-DGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR-NHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp TTCCEEEEEECSSHH-HHHHHH-HHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT-SCSEEEEEEEEECCSSTHHHH
T ss_pred CCCEEEEEEEeCcHH-HHHHHH-HHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh-cCCEEEEEeeeecCCchHHHH
Confidence 345677776443211 111222 344556677777 6777766776676666677653 699999988 4433
Q ss_pred -HHHHHHHHhcC
Q 011517 179 -LVEVVNGLLER 189 (484)
Q Consensus 179 -l~evingL~~~ 189 (484)
-+++..||++-
T Consensus 93 Va~~vs~Gl~~v 104 (160)
T 2c92_A 93 VCDAVTQGLTRV 104 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 34666777654
No 341
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=21.48 E-value=1.5e+02 Score=25.52 Aligned_cols=50 Identities=12% Similarity=0.197 Sum_probs=33.4
Q ss_pred EEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCChHH
Q 011517 111 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILV 180 (484)
Q Consensus 111 r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~ 180 (484)
+++|+-|+ | .|. .+...|+++|.++.++.. . + ++.++|+||+-||-++..
T Consensus 2 ~i~vl~~~--g------~~~-~~~~~l~~~G~~~~~~~~--~-------~--~~~~~dglil~GG~~~~~ 51 (186)
T 2ywj_A 2 IIGVLAIQ--G------DVE-EHEEAIKKAGYEAKKVKR--V-------E--DLEGIDALIIPGGESTAI 51 (186)
T ss_dssp EEEEECSS--S------CCH-HHHHHHHHTTSEEEEECS--G-------G--GGTTCSEEEECCSCHHHH
T ss_pred EEEEEecC--c------chH-HHHHHHHHCCCEEEEECC--h-------H--HhccCCEEEECCCCchhh
Confidence 57777664 2 132 345788889987776542 1 1 346789999999987665
No 342
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=21.31 E-value=79 Score=26.34 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhhhc
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFIDSF 106 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~~~ 106 (484)
..|.|...+.+++..|+++|+..+.+.
T Consensus 88 ~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 88 NVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 569999999999999999999998654
No 343
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=21.23 E-value=67 Score=26.74 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=22.2
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++...|+++|+..+.
T Consensus 100 r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 100 SSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5788999999999999999998874
No 344
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=21.20 E-value=3.3e+02 Score=21.95 Aligned_cols=95 Identities=9% Similarity=0.020 Sum_probs=48.2
Q ss_pred EEeCCCCHHHHHH-HHHHHHHhhhhcCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChh--HHHHH
Q 011517 82 FVFEPLSEDSKRL-WCEKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQL--HAKEI 158 (484)
Q Consensus 82 ~~~~~~~~~~~~~-w~~~l~~~~~~~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~--~a~~l 158 (484)
+.|....|..|.. -...|.+.........-.+|.||...+..... . .+.++..++..++.+.+..-.... ...++
T Consensus 35 v~F~a~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 112 (160)
T 3lor_A 35 VEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVM-T-PEALKVFIDEFGIKFPVAVDMPREGQRIPST 112 (160)
T ss_dssp EEEECTTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGS-C-HHHHHHHHHHTTCCSCEEEECCCTTCSSCHH
T ss_pred EEEEcCCCcchhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccC-C-HHHHHHHHHHcCCCCcEEECCccccchhhhH
Confidence 3344455666655 35556555555443334445565432221111 1 246777777777766544332221 12235
Q ss_pred HHHhhcCCCceEEEEcCCCh
Q 011517 159 VKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 159 ~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+....+-.++++..||.
T Consensus 113 ~~~~~v~~~P~~~lid~~G~ 132 (160)
T 3lor_A 113 MKKYRLEGTPSIILADRKGR 132 (160)
T ss_dssp HHHTTCCSSSEEEEECTTSB
T ss_pred HHhcccCccceEEEECCCCc
Confidence 56665555556667766664
No 345
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=21.15 E-value=3e+02 Score=22.12 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=50.7
Q ss_pred EeCCCCHHH--HHHHHHHHHHhhhhc-CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHH
Q 011517 83 VFEPLSEDS--KRLWCEKLRDFIDSF-GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIV 159 (484)
Q Consensus 83 ~~~~~~~~~--~~~w~~~l~~~~~~~-~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~ 159 (484)
.|....|.. |..-...+.+..... ....--+|.||.... .+.++..++..++.+.+. +...+...+++
T Consensus 39 ~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~--------~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~ 109 (150)
T 3fw2_A 39 NFWASWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVD--------KQQWKDAIKRDTLDWEQV-CDFGGLNSEVA 109 (150)
T ss_dssp EEECTTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSC--------HHHHHHHHHHTTCCSEEE-CCSCGGGCHHH
T ss_pred EEEeCCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCC--------HHHHHHHHHHhCCCceEE-EcCcccchHHH
Confidence 344444444 555555666655555 333344566666432 135666777788877654 33333334677
Q ss_pred HHhhcCCCceEEEEcCCCh
Q 011517 160 KVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 160 ~~~~~~~~d~IV~vGGDGt 178 (484)
+.+....+-..+++..||.
T Consensus 110 ~~~~v~~~P~~~lid~~G~ 128 (150)
T 3fw2_A 110 KQYSIYKIPANILLSSDGK 128 (150)
T ss_dssp HHTTCCSSSEEEEECTTSB
T ss_pred HHcCCCccCeEEEECCCCE
Confidence 7776666667888888886
No 346
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=20.91 E-value=1.9e+02 Score=22.39 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=44.8
Q ss_pred hHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhh----cCCCceEEEE----cCCChHHHHHHHHhcCcCcccccCCcE
Q 011517 129 FLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLD----LSKYDGIVCV----SGDGILVEVVNGLLEREDWNDAIKVPL 200 (484)
Q Consensus 129 ~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~----~~~~d~IV~v----GGDGtl~evingL~~~~~~~~~~~~pi 200 (484)
....++..|+..|+.+.+.......+|.+.+++.. ...+|.|++- +.|| .+++..|..... ...+|+
T Consensus 14 ~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g--~~~~~~l~~~~~---~~~~pi 88 (140)
T 1k68_A 14 DIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDG--REVLAEIKSDPT---LKRIPV 88 (140)
T ss_dssp HHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCH--HHHHHHHHHSTT---GGGSCE
T ss_pred HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccH--HHHHHHHHcCcc---cccccE
Confidence 44678889998888656777777777766654411 1468888763 3344 477777765421 125676
Q ss_pred EEecC
Q 011517 201 GVVPA 205 (484)
Q Consensus 201 giIP~ 205 (484)
-++-.
T Consensus 89 i~ls~ 93 (140)
T 1k68_A 89 VVLST 93 (140)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 66544
No 347
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=20.76 E-value=45 Score=31.88 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=33.5
Q ss_pred CCcEEEEEEcCCCCCcc-hhhchHHhHHHHHHhcC-CeEEEEecCChh-HHHHHHHHhhcCCCceEEEEc
Q 011517 108 RPKRLYIFVNPFGGKKI-ASKIFLDDVKPLLEDAN-IQFTVQETTQQL-HAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~-a~~~~~~~v~p~l~~ag-~~~~v~~T~~~~-~a~~l~~~~~~~~~d~IV~vG 174 (484)
.+.|+||| +|... ........++.+|++.| +++++..+...+ .+..+ .+ ++++||+||..-
T Consensus 3 ~~~kvLiv----~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f-~~-~L~~~D~vV~~~ 66 (281)
T 4e5v_A 3 KPIKTLLI----TGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF-VL-DFSPYQLVVLDY 66 (281)
T ss_dssp CCEEEEEE----ESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC-CC-CCTTCSEEEECC
T ss_pred CceEEEEE----cCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH-hh-hhhcCCEEEEeC
Confidence 45677777 34321 11222357788888888 888776553111 11112 12 467899988533
No 348
>1gtz_A 3-dehydroquinate dehydratase; lyase, type II dehydroquinase, shikimate pathway, dodecameric quaternary structure; HET: DHK; 1.6A {Streptomyces coelicolor} SCOP: c.23.13.1 PDB: 2bt4_A* 1v1j_A* 2cjf_A* 1d0i_A 1gu0_A 1gu1_A*
Probab=20.60 E-value=1.6e+02 Score=25.47 Aligned_cols=43 Identities=7% Similarity=-0.078 Sum_probs=33.1
Q ss_pred HHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEE
Q 011517 130 LDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCV 173 (484)
Q Consensus 130 ~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~v 173 (484)
++.++....+.|++++.+.+.+.++..+..++.. +++|+||+-
T Consensus 37 ~~~l~~~a~~~g~~v~~~QSN~EGeLId~Ih~a~-~~~dgiIIN 79 (156)
T 1gtz_A 37 EALCVKAAAAHGGTVDFRQSNHEGELVDWIHEAR-LNHCGIVIN 79 (156)
T ss_dssp HHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHH-HHCSEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeeCCHHHHHHHHHHhh-hcCcEEEEC
Confidence 3455556666789999999999999888888775 358888863
No 349
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=20.55 E-value=1.9e+02 Score=26.99 Aligned_cols=75 Identities=15% Similarity=0.085 Sum_probs=42.2
Q ss_pred hHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEcCCC-------hHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 132 DVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVSGDG-------ILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 132 ~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vGGDG-------tl~evingL~~~~~~~~~~~~pigiIP 204 (484)
++...+...|++++........-+..+++.....++|.||+ |-.| .+..+...++.. ...|+-++|
T Consensus 77 ~~~~~~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~~DLiV~-G~~g~~~~~~~~~Gs~~~~vl~~------~~~PVlvv~ 149 (319)
T 3olq_A 77 QQARYYLEAGIQIDIKVIWHNRPYEAIIEEVITDKHDLLIK-MAHQHDKLGSLIFTPLDWQLLRK------CPAPVWMVK 149 (319)
T ss_dssp HHHHHHHHTTCCEEEEEEECSCHHHHHHHHHHHHTCSEEEE-EEBCC--CCSCBCCHHHHHHHHH------CSSCEEEEE
T ss_pred HHHHHHhhcCCeEEEEEEecCChHHHHHHHHHhcCCCEEEE-ecCcCchhhcccccccHHHHHhc------CCCCEEEec
Confidence 34444556788877655422234455666554456787665 4222 134455555544 268999999
Q ss_pred CCCchhhhh
Q 011517 205 AGTGNGMIK 213 (484)
Q Consensus 205 ~GSgN~~A~ 213 (484)
.+....+-+
T Consensus 150 ~~~~~~~~~ 158 (319)
T 3olq_A 150 DKEWPEYGT 158 (319)
T ss_dssp SSCCCTTCE
T ss_pred CcccccCCe
Confidence 876443333
No 350
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.54 E-value=67 Score=25.95 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=21.8
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++++.|.++|+....
T Consensus 82 ~~y~f~A~s~e~~~~Wl~al~~A~~ 106 (112)
T 2coc_A 82 QSWYLSASSAELQQQWLETLSTAAH 106 (112)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEcCCHHHHHHHHHHHHHHhc
Confidence 4699999999999999999988753
No 351
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=20.45 E-value=3.6e+02 Score=25.45 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEE--ecCChhHHHHHHHHhhcCCCceEEEEcCCChHHHHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQ--ETTQQLHAKEIVKVLDLSKYDGIVCVSGDGILVEVVNG 185 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~--~T~~~~~a~~l~~~~~~~~~d~IV~vGGDGtl~eving 185 (484)
..+|+.+|.... .- +.. ..+.++..|+++|+++... ......+....++++...+.|.|++.+-......++..
T Consensus 139 g~~~vaii~~~~-~~--g~~-~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~ 214 (375)
T 3i09_A 139 GGKTWFFLTADY-AF--GKA-LEKNTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKA 214 (375)
T ss_dssp TCCEEEEEEESS-HH--HHH-HHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHH
T ss_pred CCceEEEEeccc-HH--HHH-HHHHHHHHHHHcCCEEeeeeeCCCCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHH
Confidence 457888875322 11 222 2356788889999876432 22222344455666655688988876544466667776
Q ss_pred HhcC
Q 011517 186 LLER 189 (484)
Q Consensus 186 L~~~ 189 (484)
+.+.
T Consensus 215 ~~~~ 218 (375)
T 3i09_A 215 AKEF 218 (375)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 6544
No 352
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=20.41 E-value=1.6e+02 Score=24.73 Aligned_cols=85 Identities=18% Similarity=0.188 Sum_probs=43.7
Q ss_pred cEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc---CCChHHHHHHHH
Q 011517 110 KRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS---GDGILVEVVNGL 186 (484)
Q Consensus 110 ~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG---GDGtl~evingL 186 (484)
++++|++=.. .|.+.++ .+.+...+... +++++...... ..++.+||.||++. |+|.+...+..+
T Consensus 2 mkilIiY~S~--tGnT~~v-A~~ia~~l~~~--~v~~~~~~~~~-------~~~l~~~d~ii~g~p~y~~g~~p~~~~~f 69 (169)
T 1obo_A 2 KKIGLFYGTQ--TGKTESV-AEIIRDEFGND--VVTLHDVSQAE-------VTDLNDYQYLIIGCPTLNIGELQSDWEGL 69 (169)
T ss_dssp CSEEEEECCS--SSHHHHH-HHHHHHHHCTT--TEEEEETTTCC-------GGGGGGCSEEEEEEEEETTTEECHHHHHH
T ss_pred CeEEEEEECC--CchHHHH-HHHHHHHhCcC--CcEEEEcccCC-------HHHHhhCCEEEEEEeeCCCCcCCHHHHHH
Confidence 4677777444 4555543 35677767654 45554433211 01345789888765 677665555545
Q ss_pred hcCcCcccccCCcEEEecCC
Q 011517 187 LEREDWNDAIKVPLGVVPAG 206 (484)
Q Consensus 187 ~~~~~~~~~~~~pigiIP~G 206 (484)
+..-........+++++=+|
T Consensus 70 l~~l~~~~l~~k~~~~f~tg 89 (169)
T 1obo_A 70 YSELDDVDFNGKLVAYFGTG 89 (169)
T ss_dssp HTTGGGCCCTTCEEEEEEEC
T ss_pred HHHhhhcCcCCCEEEEEEEC
Confidence 44311111123566555444
No 353
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=20.37 E-value=1.4e+02 Score=30.33 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhhhh-cCCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCC--eEEEEecCC------------hhHHH
Q 011517 92 KRLWCEKLRDFIDS-FGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANI--QFTVQETTQ------------QLHAK 156 (484)
Q Consensus 92 ~~~w~~~l~~~~~~-~~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~--~~~v~~T~~------------~~~a~ 156 (484)
...+.+.+.+.++. .-+.+.+.|++.|..|.+. ..+..+|++.|+ ++.....+. ..++.
T Consensus 157 ~~~Y~~~l~~~~~~~~i~~~~lkivvd~~nG~~~------~~~~~~l~~lG~~~~v~~~~~~pDg~Fp~~~p~p~~~~~~ 230 (464)
T 1tuo_A 157 REAYFEALKAHLDLKALSGFSGVLYHDSMGGAGA------GFLKGFLRHVGLEIPVRPIREEPHPLFHGVNPEPIPKNLG 230 (464)
T ss_dssp HHHHHHHHHTTSCHHHHTTCCSCEEEECTTSTTT------THHHHHHHHTTCCCCEEEESCSCCTTGGGSCSCCSGGGCH
T ss_pred HHHHHHHHhhhcChhhccccCCEEEEECCCCcHH------HHHHHHHHHCCCCceEEEEecccCCCCCCCCcCCCchhHH
Confidence 45677777766532 1123468899999988764 245677888888 665543332 12456
Q ss_pred HHHHHhh-cCCCceEEEEcCCC
Q 011517 157 EIVKVLD-LSKYDGIVCVSGDG 177 (484)
Q Consensus 157 ~l~~~~~-~~~~d~IV~vGGDG 177 (484)
++++... ..+.|..++.=|||
T Consensus 231 ~l~~~v~~~~~adlgia~DgDa 252 (464)
T 1tuo_A 231 VTLAVLGPETPPSFAVATDGDA 252 (464)
T ss_dssp HHHHHHTTCCTTCEEEEECTTS
T ss_pred HHHHHHHhccCCCEEEEECCCC
Confidence 7777665 56677777766666
No 354
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=20.34 E-value=4.9e+02 Score=25.03 Aligned_cols=61 Identities=13% Similarity=0.062 Sum_probs=35.5
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHHHHHHhhcCCCceEEEEc
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKVLDLSKYDGIVCVS 174 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~l~~~~~~~~~d~IV~vG 174 (484)
+.+++++++ .|..|...++ .+.++..+.+.|++++++..... ...++..++ .++|+||++.
T Consensus 255 ~~~k~~i~~--~S~~gnT~~l-a~~i~~~l~~~g~~v~~~~~~~~-~~~~~~~~l--~~~d~iiigs 315 (404)
T 2ohh_A 255 VDERVTVIY--DTMHGSTRKM-AHAIAEGAMSEGVDVRVYCLHED-DRSEIVKDI--LESGAIALGA 315 (404)
T ss_dssp CCSEEEEEE--CCSSSHHHHH-HHHHHHHHHTTTCEEEEEETTTS-CHHHHHHHH--HTCSEEEEEC
T ss_pred CCCcEEEEE--ECCChHHHHH-HHHHHHHHHhCCCeEEEEECCCC-CHHHHHHHH--HHCCEEEEEC
Confidence 345666666 3344555544 35777778777877777654432 233444444 3678887764
No 355
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=20.33 E-value=61 Score=29.01 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=51.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHH----------HHHHHhhcCCCceEEEEcCC
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAK----------EIVKVLDLSKYDGIVCVSGD 176 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~----------~l~~~~~~~~~d~IV~vGGD 176 (484)
.+++|+.|++-|..- ... + ......|..+|++++++-.+..+... ....+++...||.|++.||.
T Consensus 7 ~m~~~v~ill~~g~~---~~e-~-~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~ 81 (208)
T 3ot1_A 7 GMSKRILVPVAHGSE---EME-T-VIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGV 81 (208)
T ss_dssp --CCEEEEEECTTCC---HHH-H-HHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCH
T ss_pred ccCCeEEEEECCCCc---HHH-H-HHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCc
Confidence 356789988876321 111 1 24566888899988877654211100 00122223479999999997
Q ss_pred ChHH---------HHHHHHhcCcCcccccCCcEEEecCCCchhhhh
Q 011517 177 GILV---------EVVNGLLEREDWNDAIKVPLGVVPAGTGNGMIK 213 (484)
Q Consensus 177 Gtl~---------evingL~~~~~~~~~~~~pigiIP~GSgN~~A~ 213 (484)
+... +.+..... ..-+|+-|=.|++=.||.
T Consensus 82 ~~~~~l~~~~~l~~~l~~~~~-------~gk~i~aiC~G~a~~La~ 120 (208)
T 3ot1_A 82 GGAQAFADSTALLALIDAFSQ-------QGKLVAAICATPALVFAK 120 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHH-------TTCEEEEETTHHHHTTTT
T ss_pred hHHHHHhhCHHHHHHHHHHHH-------cCCEEEEEChhHHHHHHH
Confidence 5322 22222222 246788777775334444
No 356
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=20.29 E-value=1.6e+02 Score=26.89 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=31.7
Q ss_pred HHHHHHHHhhcCCCceEEEEcCCChHHHHHHHHhcCcCcccccCCcEEEec
Q 011517 154 HAKEIVKVLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVP 204 (484)
Q Consensus 154 ~a~~l~~~~~~~~~d~IV~vGGDGtl~evingL~~~~~~~~~~~~pigiIP 204 (484)
.|+++++.+...++ .||.-||-|....+..|.++.. ...+|++|
T Consensus 57 ~A~~lg~~La~~g~-~lVsGGg~GiM~aa~~gAl~~g------G~~iGV~~ 100 (217)
T 1wek_A 57 AGYRLGRALAEAGF-GVVTGGGPGVMEAVNRGAYEAG------GVSVGLNI 100 (217)
T ss_dssp HHHHHHHHHHHHTC-EEEECSCSHHHHHHHHHHHHTT------CCEEEEEE
T ss_pred HHHHHHHHHHHCCC-EEEeCChhhHHHHHHHHHHHcC------CCEEEEee
Confidence 35667777765444 7788888888888888887653 56889844
No 357
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.29 E-value=3.2e+02 Score=21.43 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCChhHHHH
Q 011517 108 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKE 157 (484)
Q Consensus 108 ~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~~~a~~ 157 (484)
+..++.|+.-|..+-.+..+.- .+++.+|+..+++|+.+.-.....+++
T Consensus 6 ~~m~V~vy~~~~C~~C~~~~~~-~~ak~~L~~~gi~y~~vdI~~~~~~~~ 54 (111)
T 2ct6_A 6 SGMVIRVFIASSSGFVAIKKKQ-QDVVRFLEANKIEFEEVDITMSEEQRQ 54 (111)
T ss_dssp CCCCEEEEECSSCSCHHHHHHH-HHHHHHHHHTTCCEEEEETTTCHHHHH
T ss_pred CccEEEEEEcCCCCCcccchhH-HHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence 3456888888877754433222 378999999999998776554334443
No 358
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=20.26 E-value=66 Score=25.75 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=21.4
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+....
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 95 RTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999988753
No 359
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=20.24 E-value=2.9e+02 Score=25.82 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=42.0
Q ss_pred CCCcEEEEEEcCCCCCcchhhchHHhHHHHHHhcCCeEEEEecCCh-hHHHHHHHHhhcCCCceEEEEcCCCh
Q 011517 107 GRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQ-LHAKEIVKVLDLSKYDGIVCVSGDGI 178 (484)
Q Consensus 107 ~~~~r~lviiNP~sG~~~a~~~~~~~v~p~l~~ag~~~~v~~T~~~-~~a~~l~~~~~~~~~d~IV~vGGDGt 178 (484)
++.+++.|++. .....--..+ .+-++..+++.|+++.+..+... ....++.+.+...++|+|| ++.+..
T Consensus 58 ~~~~~Igvi~~-~~~~~~~~~~-~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 127 (330)
T 3ctp_A 58 KNSKTIGLMVP-NISNPFFNQM-ASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQC 127 (330)
T ss_dssp --CCEEEEEES-CTTSHHHHHH-HHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEE-EETCCC
T ss_pred CCCCEEEEEeC-CCCCcHHHHH-HHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEE-ECCCCC
Confidence 34566777764 3222212222 34677778888998887766532 2334566666667899999 887754
No 360
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=20.04 E-value=60 Score=26.93 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.7
Q ss_pred eeEEeCCCCHHHHHHHHHHHHHhhh
Q 011517 80 KDFVFEPLSEDSKRLWCEKLRDFID 104 (484)
Q Consensus 80 ~~~~~~~~~~~~~~~w~~~l~~~~~ 104 (484)
+.+.|...++++.+.|+++|+..+.
T Consensus 100 ~~~~f~A~s~~e~~~Wi~ai~~a~~ 124 (130)
T 1v88_A 100 SYLIIRATSESDGRCWMDALELALK 124 (130)
T ss_dssp SCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998875
Done!