Query 011518
Match_columns 484
No_of_seqs 389 out of 2058
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 02:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.2E-34 2.6E-39 297.0 19.9 169 3-187 105-278 (346)
2 KOG4205 RNA-binding protein mu 100.0 2.8E-32 6E-37 272.8 16.6 235 3-247 4-243 (311)
3 TIGR01645 half-pint poly-U bin 100.0 3.7E-30 7.9E-35 277.5 16.1 178 4-186 106-286 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.9E-29 6.2E-34 258.0 16.4 166 4-185 2-172 (352)
5 KOG0117 Heterogeneous nuclear 100.0 1.1E-28 2.5E-33 248.7 19.6 178 5-190 83-337 (506)
6 KOG0144 RNA-binding protein CU 100.0 4.2E-30 9.1E-35 257.9 9.2 174 2-191 31-213 (510)
7 TIGR01622 SF-CC1 splicing fact 100.0 3.5E-29 7.5E-34 266.5 16.6 179 2-184 86-266 (457)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.2E-29 1.8E-33 254.6 17.6 183 4-186 88-351 (352)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 2.5E-28 5.4E-33 262.9 19.9 174 5-187 58-310 (578)
10 KOG0148 Apoptosis-promoting RN 100.0 1.3E-28 2.9E-33 234.7 14.2 178 5-188 62-242 (321)
11 TIGR01628 PABP-1234 polyadenyl 99.9 3.5E-27 7.6E-32 257.7 13.8 182 4-187 177-367 (562)
12 TIGR01628 PABP-1234 polyadenyl 99.9 8.5E-27 1.8E-31 254.6 14.8 165 7-186 2-169 (562)
13 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.8E-26 6E-31 247.3 17.5 184 2-185 172-376 (509)
14 KOG0145 RNA-binding protein EL 99.9 2.1E-25 4.5E-30 211.7 10.2 170 2-187 38-212 (360)
15 KOG0131 Splicing factor 3b, su 99.9 3.6E-25 7.8E-30 200.7 10.6 170 4-188 8-181 (203)
16 KOG0127 Nucleolar protein fibr 99.9 7E-25 1.5E-29 225.6 13.5 181 5-186 117-380 (678)
17 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.3E-24 2.9E-29 233.2 16.2 175 3-184 273-480 (481)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.6E-24 3.5E-29 232.4 16.2 168 5-186 2-176 (481)
19 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.8E-24 1E-28 230.0 16.1 180 4-183 294-501 (509)
20 KOG0109 RNA-binding protein LA 99.9 8.9E-25 1.9E-29 210.5 8.8 146 6-185 3-151 (346)
21 KOG0127 Nucleolar protein fibr 99.9 5.9E-24 1.3E-28 218.9 13.3 187 1-188 1-200 (678)
22 KOG0124 Polypyrimidine tract-b 99.9 8.9E-23 1.9E-27 201.4 8.4 176 5-185 113-291 (544)
23 TIGR01622 SF-CC1 splicing fact 99.9 9.1E-22 2E-26 209.6 15.9 176 5-184 186-448 (457)
24 KOG0145 RNA-binding protein EL 99.9 2.4E-21 5.2E-26 184.1 14.7 181 4-184 126-358 (360)
25 KOG4211 Splicing factor hnRNP- 99.9 1.4E-19 2.9E-24 185.7 26.7 174 5-187 10-185 (510)
26 KOG0147 Transcriptional coacti 99.8 1E-21 2.2E-26 203.5 6.6 182 2-185 176-359 (549)
27 KOG0146 RNA-binding protein ET 99.8 3.1E-21 6.6E-26 184.0 9.2 184 4-188 18-369 (371)
28 KOG0123 Polyadenylate-binding 99.8 3.5E-20 7.6E-25 191.5 12.9 154 6-189 2-158 (369)
29 KOG0110 RNA-binding protein (R 99.8 1.8E-20 3.9E-25 198.9 9.6 174 4-184 514-693 (725)
30 KOG0144 RNA-binding protein CU 99.8 4.5E-20 9.8E-25 186.0 10.7 181 4-185 123-505 (510)
31 KOG0148 Apoptosis-promoting RN 99.8 5.5E-20 1.2E-24 176.0 9.7 140 2-185 3-143 (321)
32 KOG0123 Polyadenylate-binding 99.8 5.2E-19 1.1E-23 182.8 10.8 170 3-184 74-246 (369)
33 KOG0105 Alternative splicing f 99.8 3.2E-18 7E-23 155.8 13.6 156 3-168 4-171 (241)
34 PLN03134 glycine-rich RNA-bind 99.8 7.3E-18 1.6E-22 152.7 13.3 85 103-187 32-117 (144)
35 TIGR01645 half-pint poly-U bin 99.7 3.5E-17 7.5E-22 177.3 16.0 78 5-82 204-283 (612)
36 KOG4212 RNA-binding protein hn 99.7 7.9E-17 1.7E-21 162.7 13.4 177 4-183 43-293 (608)
37 KOG0106 Alternative splicing f 99.7 5E-17 1.1E-21 154.3 7.4 160 6-181 2-168 (216)
38 PLN03134 glycine-rich RNA-bind 99.7 8.9E-17 1.9E-21 145.6 6.8 82 4-85 33-116 (144)
39 KOG4206 Spliceosomal protein s 99.6 1.3E-15 2.9E-20 143.5 12.6 168 6-181 10-219 (221)
40 KOG0147 Transcriptional coacti 99.6 2.5E-15 5.5E-20 156.3 10.3 173 5-182 278-526 (549)
41 KOG0149 Predicted RNA-binding 99.6 6E-16 1.3E-20 146.2 5.1 79 4-82 11-90 (247)
42 COG0724 RNA-binding proteins ( 99.6 6E-15 1.3E-19 142.5 9.5 142 5-146 115-266 (306)
43 KOG0149 Predicted RNA-binding 99.6 4.6E-15 1E-19 140.3 7.5 81 103-183 10-90 (247)
44 TIGR01659 sex-lethal sex-letha 99.6 9E-15 2E-19 150.4 9.5 85 101-185 103-188 (346)
45 KOG0129 Predicted RNA-binding 99.6 1.7E-14 3.7E-19 149.4 11.3 186 2-188 256-458 (520)
46 KOG0113 U1 small nuclear ribon 99.5 3.1E-15 6.7E-20 145.4 5.0 90 103-192 99-189 (335)
47 KOG4211 Splicing factor hnRNP- 99.5 7.5E-14 1.6E-18 143.8 14.6 176 5-183 103-357 (510)
48 KOG0110 RNA-binding protein (R 99.5 2.7E-14 5.8E-19 152.3 11.4 175 2-182 382-596 (725)
49 KOG1365 RNA-binding protein Fu 99.5 1.9E-14 4.1E-19 143.6 7.5 181 4-186 160-364 (508)
50 TIGR01648 hnRNP-R-Q heterogene 99.5 1.8E-14 3.9E-19 156.0 7.8 119 5-131 233-367 (578)
51 KOG1548 Transcription elongati 99.5 1.3E-13 2.7E-18 136.6 12.8 174 5-183 134-351 (382)
52 KOG0121 Nuclear cap-binding pr 99.5 4.7E-14 1E-18 121.8 7.0 84 103-186 34-118 (153)
53 KOG0125 Ataxin 2-binding prote 99.5 8.4E-14 1.8E-18 137.0 9.7 85 101-187 92-177 (376)
54 PF00076 RRM_1: RNA recognitio 99.5 8E-14 1.7E-18 108.9 7.8 69 108-177 1-70 (70)
55 PF00076 RRM_1: RNA recognitio 99.5 5.1E-14 1.1E-18 110.0 6.0 68 8-76 1-70 (70)
56 KOG0122 Translation initiation 99.4 1E-13 2.3E-18 131.6 6.4 81 3-83 187-269 (270)
57 KOG1457 RNA binding protein (c 99.4 8.6E-13 1.9E-17 123.8 11.6 165 5-177 34-274 (284)
58 KOG0122 Translation initiation 99.4 3E-13 6.5E-18 128.5 8.6 82 103-184 187-269 (270)
59 PF14259 RRM_6: RNA recognitio 99.4 3.4E-13 7.4E-18 106.2 7.3 69 108-177 1-70 (70)
60 KOG0120 Splicing factor U2AF, 99.4 5.5E-13 1.2E-17 140.5 10.1 179 4-182 288-490 (500)
61 PLN03120 nucleic acid binding 99.4 2.7E-13 5.8E-18 132.2 7.0 79 3-84 2-81 (260)
62 PF14259 RRM_6: RNA recognitio 99.4 2.6E-13 5.7E-18 106.8 4.5 68 8-76 1-70 (70)
63 KOG1190 Polypyrimidine tract-b 99.4 3.4E-12 7.4E-17 128.8 12.6 170 5-183 297-490 (492)
64 KOG4207 Predicted splicing fac 99.4 4.6E-13 1E-17 124.3 5.7 83 101-183 9-92 (256)
65 PLN03120 nucleic acid binding 99.4 1.2E-12 2.7E-17 127.5 9.0 78 105-185 4-81 (260)
66 KOG0124 Polypyrimidine tract-b 99.4 4.6E-12 1E-16 126.0 12.0 177 4-180 209-531 (544)
67 KOG0117 Heterogeneous nuclear 99.4 5.6E-12 1.2E-16 128.5 12.3 120 55-183 42-163 (506)
68 KOG0121 Nuclear cap-binding pr 99.3 1.3E-12 2.7E-17 113.0 6.0 80 3-82 34-115 (153)
69 KOG0107 Alternative splicing f 99.3 9.8E-13 2.1E-17 119.4 5.4 75 5-84 10-86 (195)
70 PLN03213 repressor of silencin 99.3 5E-13 1.1E-17 137.2 3.6 77 4-84 9-89 (759)
71 PLN03121 nucleic acid binding 99.3 1.9E-12 4.2E-17 124.4 6.8 80 1-83 1-81 (243)
72 KOG0107 Alternative splicing f 99.3 2.5E-12 5.5E-17 116.8 6.9 76 104-184 9-85 (195)
73 COG0724 RNA-binding proteins ( 99.3 4.8E-12 1E-16 122.2 9.3 79 105-183 115-194 (306)
74 KOG0111 Cyclophilin-type pepti 99.3 1.5E-12 3.2E-17 121.9 5.0 89 103-191 8-97 (298)
75 smart00362 RRM_2 RNA recogniti 99.3 7.2E-12 1.6E-16 96.7 7.7 71 107-179 1-72 (72)
76 smart00360 RRM RNA recognition 99.3 8.2E-12 1.8E-16 95.9 7.0 70 110-179 1-71 (71)
77 KOG0113 U1 small nuclear ribon 99.3 5.1E-12 1.1E-16 123.2 6.5 80 2-81 98-179 (335)
78 smart00362 RRM_2 RNA recogniti 99.3 7E-12 1.5E-16 96.7 5.8 70 7-78 1-72 (72)
79 KOG1365 RNA-binding protein Fu 99.3 1.4E-11 3.1E-16 123.3 9.3 178 3-181 58-240 (508)
80 KOG1190 Polypyrimidine tract-b 99.3 6.3E-12 1.4E-16 126.8 6.8 170 2-181 25-225 (492)
81 PLN03213 repressor of silencin 99.3 9.9E-12 2.1E-16 127.7 8.2 78 103-184 8-88 (759)
82 KOG4212 RNA-binding protein hn 99.3 2.7E-11 5.9E-16 123.0 11.1 81 103-184 42-124 (608)
83 KOG0131 Splicing factor 3b, su 99.2 1.5E-11 3.2E-16 112.5 7.6 80 103-182 7-87 (203)
84 KOG4207 Predicted splicing fac 99.2 7E-12 1.5E-16 116.5 5.4 79 4-82 12-92 (256)
85 KOG0120 Splicing factor U2AF, 99.2 1.2E-11 2.5E-16 130.5 7.8 182 1-188 171-373 (500)
86 PLN03121 nucleic acid binding 99.2 2.4E-11 5.1E-16 117.0 8.7 78 104-184 4-81 (243)
87 smart00360 RRM RNA recognition 99.2 1.1E-11 2.5E-16 95.1 5.2 69 10-78 1-71 (71)
88 KOG0125 Ataxin 2-binding prote 99.2 8.1E-12 1.8E-16 123.1 5.3 80 4-85 95-176 (376)
89 cd00590 RRM RRM (RNA recogniti 99.2 4.6E-11 9.9E-16 92.6 8.2 73 107-180 1-74 (74)
90 KOG0126 Predicted RNA-binding 99.2 1.4E-12 3.1E-17 118.9 -0.7 81 3-83 33-115 (219)
91 KOG0130 RNA-binding protein RB 99.2 2.6E-11 5.5E-16 105.8 6.8 84 104-187 71-155 (170)
92 KOG0105 Alternative splicing f 99.2 2.8E-11 6E-16 110.8 7.2 78 104-184 5-83 (241)
93 KOG0111 Cyclophilin-type pepti 99.2 1.1E-11 2.4E-16 116.0 4.1 86 1-86 6-93 (298)
94 KOG0108 mRNA cleavage and poly 99.2 2.3E-11 5.1E-16 127.5 6.3 80 6-85 19-100 (435)
95 KOG0114 Predicted RNA-binding 99.2 9.9E-11 2.1E-15 97.8 8.1 81 101-184 14-95 (124)
96 KOG0126 Predicted RNA-binding 99.2 5.8E-12 1.2E-16 115.0 0.2 79 104-182 34-113 (219)
97 cd00590 RRM RRM (RNA recogniti 99.1 7.2E-11 1.6E-15 91.5 6.1 71 7-78 1-73 (74)
98 KOG0130 RNA-binding protein RB 99.1 3.2E-11 7E-16 105.2 4.1 79 7-85 74-154 (170)
99 KOG4205 RNA-binding protein mu 99.1 3.7E-11 7.9E-16 121.1 4.4 89 104-192 5-93 (311)
100 KOG0128 RNA-binding protein SA 99.1 1.2E-11 2.5E-16 134.6 -0.1 152 3-187 665-818 (881)
101 KOG0108 mRNA cleavage and poly 99.1 1.2E-10 2.5E-15 122.3 6.7 81 106-186 19-100 (435)
102 KOG0116 RasGAP SH3 binding pro 99.1 3.6E-10 7.8E-15 118.0 10.0 81 106-186 289-369 (419)
103 KOG4210 Nuclear localization s 99.1 1.5E-10 3.2E-15 116.1 6.4 177 4-186 87-266 (285)
104 KOG4454 RNA binding protein (R 99.1 1.8E-11 4E-16 114.7 -0.3 134 3-168 7-146 (267)
105 KOG1456 Heterogeneous nuclear 99.1 6.7E-10 1.5E-14 111.2 10.1 162 5-186 31-201 (494)
106 KOG0114 Predicted RNA-binding 99.1 1.4E-10 2.9E-15 97.0 4.3 79 4-85 17-97 (124)
107 KOG0109 RNA-binding protein LA 99.0 1.8E-10 3.9E-15 112.1 4.8 71 106-184 3-74 (346)
108 smart00361 RRM_1 RNA recogniti 99.0 6.1E-10 1.3E-14 88.3 6.6 61 119-179 2-70 (70)
109 PF13893 RRM_5: RNA recognitio 99.0 1.8E-09 3.8E-14 81.5 6.6 55 122-181 1-56 (56)
110 KOG0415 Predicted peptidyl pro 98.9 1.2E-09 2.6E-14 108.7 6.1 83 101-183 235-318 (479)
111 KOG1456 Heterogeneous nuclear 98.9 1.4E-08 3.1E-13 101.9 13.4 163 4-173 286-474 (494)
112 smart00361 RRM_1 RNA recogniti 98.9 1.5E-09 3.4E-14 85.9 4.9 60 18-77 1-69 (70)
113 KOG0226 RNA-binding proteins [ 98.9 2.1E-09 4.6E-14 103.0 4.9 166 7-183 98-269 (290)
114 KOG0132 RNA polymerase II C-te 98.8 3.2E-09 7E-14 114.7 5.9 108 4-128 420-529 (894)
115 KOG0415 Predicted peptidyl pro 98.8 3.2E-09 7E-14 105.7 4.7 80 3-82 237-318 (479)
116 KOG0112 Large RNA-binding prot 98.8 2.9E-09 6.3E-14 116.7 4.5 161 3-188 370-535 (975)
117 KOG0146 RNA-binding protein ET 98.8 3.1E-09 6.7E-14 102.4 3.9 83 3-85 283-367 (371)
118 KOG0132 RNA polymerase II C-te 98.8 1.8E-08 3.8E-13 109.1 8.6 79 104-188 420-499 (894)
119 PF13893 RRM_5: RNA recognitio 98.8 7.8E-09 1.7E-13 78.0 4.1 54 22-80 1-56 (56)
120 KOG0153 Predicted RNA-binding 98.7 2.6E-08 5.6E-13 99.4 8.3 82 98-185 221-304 (377)
121 KOG4307 RNA binding protein RB 98.7 3.1E-08 6.6E-13 106.0 7.2 180 3-183 309-513 (944)
122 KOG4208 Nucleolar RNA-binding 98.7 7E-08 1.5E-12 90.3 8.2 82 103-184 47-130 (214)
123 KOG0153 Predicted RNA-binding 98.7 3.3E-08 7E-13 98.7 6.2 74 3-82 226-302 (377)
124 KOG4208 Nucleolar RNA-binding 98.6 4.4E-08 9.6E-13 91.6 4.9 80 4-83 48-130 (214)
125 KOG0533 RRM motif-containing p 98.6 1.3E-07 2.9E-12 92.1 8.2 84 103-187 81-165 (243)
126 KOG4661 Hsp27-ERE-TATA-binding 98.6 1.1E-07 2.4E-12 99.7 7.6 79 105-183 405-484 (940)
127 KOG4206 Spliceosomal protein s 98.5 2.3E-07 5.1E-12 88.1 7.1 79 104-185 8-91 (221)
128 KOG0116 RasGAP SH3 binding pro 98.5 1.7E-07 3.7E-12 98.1 6.2 79 4-82 287-366 (419)
129 KOG4209 Splicing factor RNPS1, 98.4 2.4E-07 5.1E-12 90.3 5.8 83 102-184 98-180 (231)
130 KOG1548 Transcription elongati 98.4 5.4E-07 1.2E-11 90.1 8.4 82 101-183 130-220 (382)
131 KOG4661 Hsp27-ERE-TATA-binding 98.4 2.6E-07 5.6E-12 97.0 6.0 78 5-82 405-484 (940)
132 KOG4676 Splicing factor, argin 98.4 1.8E-07 3.9E-12 94.6 4.7 165 4-172 6-214 (479)
133 KOG4660 Protein Mei2, essentia 98.4 2.5E-07 5.5E-12 97.4 5.8 169 2-182 72-248 (549)
134 KOG0533 RRM motif-containing p 98.4 4.3E-07 9.3E-12 88.6 6.3 80 3-83 81-162 (243)
135 KOG4454 RNA binding protein (R 98.4 1.3E-07 2.8E-12 89.1 1.9 78 102-181 6-84 (267)
136 KOG2193 IGF-II mRNA-binding pr 98.4 8.3E-08 1.8E-12 97.7 0.4 149 6-183 2-156 (584)
137 KOG1995 Conserved Zn-finger pr 98.3 1.1E-06 2.5E-11 88.4 6.3 84 102-185 63-155 (351)
138 KOG4209 Splicing factor RNPS1, 98.3 4.6E-07 1E-11 88.3 3.3 82 2-83 98-180 (231)
139 PF04059 RRM_2: RNA recognitio 98.3 1.6E-06 3.6E-11 73.0 5.8 59 6-64 2-62 (97)
140 KOG0106 Alternative splicing f 98.2 8.4E-07 1.8E-11 84.9 4.3 72 106-185 2-74 (216)
141 KOG0226 RNA-binding proteins [ 98.2 8.9E-07 1.9E-11 85.3 3.6 82 3-84 188-271 (290)
142 KOG0128 RNA-binding protein SA 98.2 1.5E-07 3.2E-12 103.2 -2.4 163 5-173 571-735 (881)
143 KOG4307 RNA binding protein RB 98.2 3.6E-05 7.8E-10 83.1 15.0 75 5-80 434-511 (944)
144 KOG4660 Protein Mei2, essentia 98.1 2.8E-06 6.2E-11 89.7 4.5 70 103-177 73-143 (549)
145 PF04059 RRM_2: RNA recognitio 98.0 2E-05 4.4E-10 66.4 7.9 78 106-183 2-86 (97)
146 KOG1457 RNA binding protein (c 98.0 2.5E-05 5.4E-10 74.2 8.3 88 101-188 30-122 (284)
147 KOG0151 Predicted splicing reg 97.9 1.3E-05 2.8E-10 86.6 5.7 82 3-84 172-258 (877)
148 PF08777 RRM_3: RNA binding mo 97.8 3.3E-05 7.2E-10 66.2 6.1 68 106-179 2-75 (105)
149 KOG4849 mRNA cleavage factor I 97.8 3.9E-05 8.6E-10 76.9 6.7 77 103-179 78-157 (498)
150 KOG1995 Conserved Zn-finger pr 97.8 1.8E-05 3.9E-10 79.9 4.3 82 4-85 65-156 (351)
151 KOG0151 Predicted splicing reg 97.8 2.6E-05 5.7E-10 84.3 5.6 83 102-184 171-257 (877)
152 PF11608 Limkain-b1: Limkain b 97.6 0.00024 5.3E-09 57.8 6.9 68 106-183 3-76 (90)
153 KOG1855 Predicted RNA-binding 97.6 0.00012 2.6E-09 75.4 6.3 67 103-169 229-308 (484)
154 PF08777 RRM_3: RNA binding mo 97.4 0.00018 3.9E-09 61.7 4.5 53 6-64 2-54 (105)
155 PF11608 Limkain-b1: Limkain b 97.3 0.00069 1.5E-08 55.2 6.7 68 6-83 3-77 (90)
156 KOG4849 mRNA cleavage factor I 97.3 0.0003 6.5E-09 70.7 4.7 73 6-78 81-157 (498)
157 KOG4210 Nuclear localization s 97.3 0.00011 2.4E-09 73.9 1.7 79 7-85 186-266 (285)
158 PF14605 Nup35_RRM_2: Nup53/35 97.1 0.00086 1.9E-08 50.2 4.6 52 106-164 2-53 (53)
159 PF14605 Nup35_RRM_2: Nup53/35 97.0 0.00095 2.1E-08 50.0 4.0 52 6-64 2-53 (53)
160 KOG2591 c-Mpl binding protein, 96.8 0.0025 5.4E-08 67.8 7.1 71 103-180 173-248 (684)
161 COG5175 MOT2 Transcriptional r 96.8 0.0024 5.1E-08 64.2 6.1 81 104-184 113-203 (480)
162 KOG0129 Predicted RNA-binding 96.8 0.0014 3.1E-08 69.2 4.9 60 5-64 370-430 (520)
163 KOG1855 Predicted RNA-binding 96.8 0.00066 1.4E-08 70.1 2.1 63 2-64 228-303 (484)
164 KOG3152 TBP-binding protein, a 96.7 0.00061 1.3E-08 66.1 1.0 71 4-74 73-157 (278)
165 KOG2314 Translation initiation 96.6 0.0013 2.8E-08 70.0 2.6 66 5-71 58-131 (698)
166 KOG0115 RNA-binding protein p5 96.6 0.0036 7.7E-08 60.9 5.4 93 65-181 14-111 (275)
167 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.0098 2.1E-07 50.5 5.5 77 105-182 6-90 (100)
168 PF10567 Nab6_mRNP_bdg: RNA-re 96.2 0.05 1.1E-06 54.2 11.0 164 4-168 14-212 (309)
169 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.011 2.3E-07 50.3 5.6 77 3-80 4-89 (100)
170 PF10309 DUF2414: Protein of u 96.2 0.016 3.4E-07 44.8 5.9 55 104-166 4-61 (62)
171 COG5175 MOT2 Transcriptional r 96.1 0.0063 1.4E-07 61.2 4.3 77 6-82 115-202 (480)
172 KOG4676 Splicing factor, argin 96.0 0.005 1.1E-07 63.1 3.4 77 106-182 8-87 (479)
173 KOG0115 RNA-binding protein p5 95.9 0.015 3.3E-07 56.6 5.9 58 6-64 32-89 (275)
174 KOG1996 mRNA splicing factor [ 95.8 0.015 3.3E-07 57.5 5.6 63 119-181 300-364 (378)
175 KOG3152 TBP-binding protein, a 95.8 0.012 2.6E-07 57.4 4.5 72 104-175 73-157 (278)
176 PF08675 RNA_bind: RNA binding 95.7 0.028 6.1E-07 45.9 5.7 59 101-168 5-63 (87)
177 KOG2314 Translation initiation 95.7 0.019 4.2E-07 61.4 6.1 75 104-179 57-139 (698)
178 PF07292 NID: Nmi/IFP 35 domai 95.6 0.0079 1.7E-07 49.8 2.3 71 50-127 1-74 (88)
179 PF08952 DUF1866: Domain of un 95.5 0.03 6.6E-07 50.5 5.8 56 121-184 52-107 (146)
180 KOG2202 U2 snRNP splicing fact 95.4 0.012 2.5E-07 57.5 3.2 61 20-81 83-146 (260)
181 KOG2416 Acinus (induces apopto 95.3 0.019 4.1E-07 61.8 4.6 78 101-184 440-522 (718)
182 KOG2202 U2 snRNP splicing fact 95.3 0.0083 1.8E-07 58.5 1.7 61 120-181 83-145 (260)
183 KOG2193 IGF-II mRNA-binding pr 95.0 0.019 4.1E-07 59.4 3.3 76 106-187 2-79 (584)
184 KOG2135 Proteins containing th 94.9 0.024 5.2E-07 59.5 3.8 72 107-184 374-446 (526)
185 KOG2135 Proteins containing th 94.9 0.017 3.6E-07 60.7 2.5 78 1-84 368-447 (526)
186 KOG1996 mRNA splicing factor [ 94.4 0.046 9.9E-07 54.3 4.2 62 19-80 300-364 (378)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 94.1 0.029 6.2E-07 52.7 2.1 69 3-71 5-81 (176)
188 PF08952 DUF1866: Domain of un 93.7 0.11 2.4E-06 46.9 5.1 56 21-84 52-108 (146)
189 PF15023 DUF4523: Protein of u 93.7 0.21 4.5E-06 44.9 6.6 76 101-183 82-161 (166)
190 KOG2591 c-Mpl binding protein, 93.7 0.063 1.4E-06 57.5 3.9 69 3-78 173-247 (684)
191 PF10309 DUF2414: Protein of u 93.7 0.17 3.6E-06 39.2 5.2 53 5-65 5-60 (62)
192 KOG2253 U1 snRNP complex, subu 92.6 0.06 1.3E-06 58.8 1.9 114 5-127 40-157 (668)
193 KOG0112 Large RNA-binding prot 92.5 0.032 7E-07 62.7 -0.4 64 104-168 371-434 (975)
194 KOG2416 Acinus (induces apopto 92.4 0.1 2.3E-06 56.3 3.3 69 5-79 444-518 (718)
195 PF03467 Smg4_UPF3: Smg-4/UPF3 92.4 0.078 1.7E-06 49.7 2.1 80 104-183 6-97 (176)
196 KOG0921 Dosage compensation co 91.9 0.92 2E-05 51.8 9.8 20 152-171 1086-1105(1282)
197 PF14111 DUF4283: Domain of un 91.4 0.33 7.2E-06 43.6 5.1 119 6-139 16-139 (153)
198 KOG2068 MOT2 transcription fac 91.3 0.11 2.3E-06 52.8 1.7 82 103-184 75-163 (327)
199 PF07576 BRAP2: BRCA1-associat 91.0 1.2 2.6E-05 38.5 7.8 62 105-168 13-75 (110)
200 KOG4285 Mitotic phosphoprotein 90.8 0.75 1.6E-05 46.1 7.1 78 107-191 199-277 (350)
201 PF08675 RNA_bind: RNA binding 89.7 0.35 7.6E-06 39.6 3.1 50 7-64 10-59 (87)
202 PF15023 DUF4523: Protein of u 89.7 0.79 1.7E-05 41.3 5.6 71 2-79 83-158 (166)
203 KOG0804 Cytoplasmic Zn-finger 87.7 1.2 2.6E-05 47.0 6.2 64 5-70 74-140 (493)
204 KOG4285 Mitotic phosphoprotein 87.6 0.96 2.1E-05 45.4 5.3 74 5-85 197-272 (350)
205 PF07576 BRAP2: BRCA1-associat 86.5 1.7 3.6E-05 37.7 5.6 57 6-64 13-71 (110)
206 KOG2253 U1 snRNP complex, subu 84.5 0.65 1.4E-05 51.1 2.5 69 103-180 38-107 (668)
207 PF03880 DbpA: DbpA RNA bindin 84.3 2.8 6E-05 33.3 5.5 59 114-181 10-74 (74)
208 PF04847 Calcipressin: Calcipr 83.5 1.6 3.4E-05 41.3 4.4 62 118-185 8-72 (184)
209 COG5594 Uncharacterized integr 83.5 0.3 6.6E-06 55.0 -0.5 28 3-30 206-234 (827)
210 PF04847 Calcipressin: Calcipr 82.9 2 4.4E-05 40.6 4.9 61 17-83 7-71 (184)
211 KOG4574 RNA-binding protein (c 82.7 0.97 2.1E-05 51.0 3.0 76 107-188 300-378 (1007)
212 KOG2068 MOT2 transcription fac 82.7 0.41 8.8E-06 48.7 0.1 79 6-84 78-164 (327)
213 KOG2318 Uncharacterized conser 81.8 3 6.5E-05 45.4 6.1 126 2-180 171-304 (650)
214 PF07530 PRE_C2HC: Associated 78.9 2.3 5E-05 33.5 3.2 63 20-83 2-65 (68)
215 smart00596 PRE_C2HC PRE_C2HC d 77.2 2.8 6E-05 33.1 3.1 63 20-83 2-65 (69)
216 KOG4483 Uncharacterized conser 76.1 1.5 3.2E-05 45.6 1.7 56 105-167 391-447 (528)
217 PRK11634 ATP-dependent RNA hel 75.5 11 0.00023 42.5 8.5 71 106-185 487-564 (629)
218 TIGR02542 B_forsyth_147 Bacter 73.5 3.6 7.9E-05 35.7 3.2 115 13-157 11-129 (145)
219 PF07530 PRE_C2HC: Associated 72.2 6.8 0.00015 30.8 4.2 62 120-184 2-65 (68)
220 TIGR02515 IV_pilus_PilQ type I 71.1 18 0.00038 38.6 8.5 143 13-167 4-158 (418)
221 PF03880 DbpA: DbpA RNA bindin 70.0 8.4 0.00018 30.5 4.4 56 16-80 12-74 (74)
222 KOG0804 Cytoplasmic Zn-finger 69.4 9.7 0.00021 40.4 5.8 66 105-172 74-141 (493)
223 PF03468 XS: XS domain; Inter 69.2 15 0.00032 32.1 6.1 49 117-168 29-78 (116)
224 PF11767 SET_assoc: Histone ly 68.9 11 0.00024 29.5 4.8 51 16-75 11-63 (66)
225 PF02714 DUF221: Domain of unk 68.3 6.4 0.00014 40.1 4.3 32 50-81 1-32 (325)
226 KOG4410 5-formyltetrahydrofola 68.1 17 0.00037 36.4 6.9 48 105-158 330-378 (396)
227 smart00596 PRE_C2HC PRE_C2HC d 67.7 7.7 0.00017 30.6 3.6 61 120-183 2-64 (69)
228 PF11767 SET_assoc: Histone ly 66.3 15 0.00032 28.8 5.0 52 116-176 11-63 (66)
229 KOG4483 Uncharacterized conser 65.3 8.3 0.00018 40.3 4.3 58 5-68 391-448 (528)
230 KOG4574 RNA-binding protein (c 59.0 6.2 0.00013 44.9 2.3 73 5-83 298-374 (1007)
231 PF10567 Nab6_mRNP_bdg: RNA-re 57.9 25 0.00055 35.5 6.1 81 103-183 13-107 (309)
232 KOG4213 RNA-binding protein La 57.8 5.6 0.00012 37.2 1.4 55 5-64 111-167 (205)
233 PF03468 XS: XS domain; Inter 56.8 12 0.00025 32.7 3.2 55 7-64 10-74 (116)
234 PHA00019 IV phage assembly pro 53.2 1.3E+02 0.0028 32.2 11.1 31 12-42 23-53 (428)
235 KOG4213 RNA-binding protein La 49.2 9.9 0.00021 35.6 1.6 67 105-176 111-179 (205)
236 KOG2891 Surface glycoprotein [ 48.2 17 0.00038 36.2 3.2 38 101-138 145-194 (445)
237 COG5193 LHP1 La protein, small 47.3 10 0.00022 39.7 1.5 63 103-165 172-244 (438)
238 PF02714 DUF221: Domain of unk 46.5 20 0.00044 36.4 3.6 36 150-186 1-36 (325)
239 KOG4008 rRNA processing protei 46.3 19 0.00042 35.2 3.1 35 1-35 36-70 (261)
240 PRK10560 hofQ outer membrane p 45.9 1E+02 0.0023 32.4 8.9 61 17-80 2-68 (386)
241 KOG4019 Calcineurin-mediated s 42.4 19 0.00041 33.8 2.4 74 106-185 11-91 (193)
242 PF14026 DUF4242: Protein of u 42.1 1.3E+02 0.0027 24.2 6.8 58 108-167 3-67 (77)
243 COG5193 LHP1 La protein, small 41.2 8.4 0.00018 40.3 -0.2 61 4-64 173-243 (438)
244 KOG2295 C2H2 Zn-finger protein 40.2 7.2 0.00016 42.4 -0.8 72 103-174 229-301 (648)
245 KOG4019 Calcineurin-mediated s 39.9 60 0.0013 30.6 5.2 71 7-83 12-90 (193)
246 PF08206 OB_RNB: Ribonuclease 36.4 7.6 0.00016 29.3 -1.0 37 146-182 7-44 (58)
247 PF07292 NID: Nmi/IFP 35 domai 35.5 12 0.00025 31.2 -0.2 26 2-27 49-74 (88)
248 TIGR03636 L23_arch archaeal ri 35.2 81 0.0017 25.5 4.6 55 7-64 15-71 (77)
249 PRK11901 hypothetical protein; 33.8 58 0.0013 33.5 4.4 55 116-172 253-309 (327)
250 KOG4365 Uncharacterized conser 33.2 14 0.0003 39.2 -0.1 77 5-82 3-81 (572)
251 cd06405 PB1_Mekk2_3 The PB1 do 32.5 2.5E+02 0.0054 22.7 6.8 60 112-179 15-75 (79)
252 KOG4388 Hormone-sensitive lipa 30.9 81 0.0018 35.1 5.1 57 107-169 791-853 (880)
253 PF07683 CobW_C: Cobalamin syn 30.8 83 0.0018 25.4 4.3 87 12-129 7-93 (94)
254 PF14026 DUF4242: Protein of u 30.0 2.1E+02 0.0046 22.9 6.4 57 8-64 3-64 (77)
255 PF08002 DUF1697: Protein of u 29.5 85 0.0018 28.1 4.4 121 6-138 4-132 (137)
256 PRK14548 50S ribosomal protein 29.4 1.1E+02 0.0024 25.1 4.7 55 7-64 22-78 (84)
257 KOG2295 C2H2 Zn-finger protein 28.9 9.8 0.00021 41.4 -2.0 58 4-61 230-287 (648)
258 KOG4410 5-formyltetrahydrofola 28.8 52 0.0011 33.1 3.0 49 6-59 331-379 (396)
259 PF00276 Ribosomal_L23: Riboso 28.4 81 0.0017 26.1 3.8 33 7-39 21-55 (91)
260 PRK14548 50S ribosomal protein 28.3 1.5E+02 0.0032 24.4 5.2 55 109-166 24-80 (84)
261 PF00837 T4_deiodinase: Iodoth 28.1 43 0.00093 33.0 2.3 24 18-41 120-143 (237)
262 TIGR03636 L23_arch archaeal ri 27.9 1.6E+02 0.0035 23.7 5.3 56 108-166 16-73 (77)
263 COG4010 Uncharacterized protei 27.6 1.4E+02 0.0031 27.1 5.2 47 112-168 118-164 (170)
264 COG0445 GidA Flavin-dependent 27.2 1.3E+02 0.0029 33.4 6.0 92 49-140 238-336 (621)
265 KOG1148 Glutaminyl-tRNA synthe 26.8 2.6E+02 0.0056 31.4 8.0 67 115-181 231-320 (764)
266 PF14893 PNMA: PNMA 26.5 63 0.0014 33.5 3.3 24 5-28 18-41 (331)
267 KOG1175 Acyl-CoA synthetase [L 26.4 83 0.0018 35.5 4.5 91 17-129 508-599 (626)
268 PF15513 DUF4651: Domain of un 26.4 1E+02 0.0022 23.9 3.6 19 119-137 8-26 (62)
269 PF00403 HMA: Heavy-metal-asso 26.1 2.5E+02 0.0055 20.6 5.9 55 107-167 1-59 (62)
270 KOG3424 40S ribosomal protein 26.1 93 0.002 27.3 3.7 48 15-63 33-85 (132)
271 PF11411 DNA_ligase_IV: DNA li 25.8 41 0.00088 23.2 1.2 16 15-30 19-34 (36)
272 COG5638 Uncharacterized conser 24.6 1.3E+02 0.0029 31.8 5.2 37 4-40 145-186 (622)
273 PF00564 PB1: PB1 domain; Int 23.9 3E+02 0.0064 21.5 6.3 62 112-179 17-80 (84)
274 smart00833 CobW_C Cobalamin sy 23.5 2.6E+02 0.0057 22.1 6.0 23 104-129 69-91 (92)
275 TIGR02542 B_forsyth_147 Bacter 23.4 78 0.0017 27.7 2.8 46 14-59 83-131 (145)
276 KOG2187 tRNA uracil-5-methyltr 22.6 72 0.0016 34.9 3.0 36 48-83 64-101 (534)
277 PF14893 PNMA: PNMA 22.1 50 0.0011 34.2 1.7 26 103-128 16-41 (331)
278 PRK09631 DNA topoisomerase IV 21.9 3.1E+02 0.0068 31.0 7.9 57 4-64 219-279 (635)
279 PF09869 DUF2096: Uncharacteri 21.5 3.8E+02 0.0083 25.0 7.0 54 105-169 112-165 (169)
280 PRK10905 cell division protein 21.4 1.5E+02 0.0033 30.4 4.9 56 116-173 255-312 (328)
281 PRK01178 rps24e 30S ribosomal 21.1 1.6E+02 0.0034 25.0 4.2 47 16-63 30-81 (99)
282 PF07876 Dabb: Stress responsi 20.9 4.4E+02 0.0095 21.0 7.3 58 108-165 4-72 (97)
283 cd00874 RNA_Cyclase_Class_II R 20.7 4.1E+02 0.0088 27.4 8.0 47 107-154 188-237 (326)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.2e-34 Score=296.95 Aligned_cols=169 Identities=20% Similarity=0.389 Sum_probs=153.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++|| ++.+.|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 35789999999999999999999999999999999999999999999999999999999999 8899999999999987
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.+... ....++|||+|||+++||+||+++|++||+|++|+|++|+.++++|+||||+|+++++|
T Consensus 185 ~p~~~----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A 248 (346)
T TIGR01659 185 RPGGE----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEA 248 (346)
T ss_pred ccccc----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 65321 12346799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hhhcC--eEEEEeecCCCCCC
Q 011518 161 DKVLLKTF-HELNG--KMVEVKRAVPKELS 187 (484)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~~k~~~ 187 (484)
++||++++ +.|.+ ++|+|+++..+...
T Consensus 249 ~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 249 QEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 99999999 67765 78999988765443
No 2
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=272.81 Aligned_cols=235 Identities=54% Similarity=0.960 Sum_probs=196.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.|.++|||++|+|++|||.|+++|.+||+|.+|+||+|+.++++++|+||+|++++...++| ...|.|+++.|+++++.
T Consensus 4 ~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 4 GESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred cCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 37899999999999999999999999999999999999999999999999999999999999 77899999999999999
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
++.++....+. .++++|||+.||.++++++|++.|++|+.|.++.|+.|+.+.++++|+||+|+++++++
T Consensus 84 ~r~~~~~~~~~----------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVd 153 (311)
T KOG4205|consen 84 SREDQTKVGRH----------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVD 153 (311)
T ss_pred Ccccccccccc----------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccc
Confidence 98876554432 26789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCeEEEEeecCCCCCCCCCCCCCC--c-cccccccccccccccccCCCCCCCCccceeeecc-ccccccc
Q 011518 162 KVLLKTFHELNGKMVEVKRAVPKELSPGPSRNQL--G-THNYGLSRVSSFLNGYTQSYNPSSVGGYGLRIDG-RYGPVTI 237 (484)
Q Consensus 162 ~Al~~~~~~l~Gr~I~V~~a~~k~~~~~~~r~~~--g-g~~~g~~~~~~~~~g~~~g~~~~~~GGyG~r~~g-r~~~~~g 237 (484)
+++.+..++|++++|+|++|.|++.......... . ...++..+...+...+-.++.+.....|+.++.+ ++++...
T Consensus 154 kv~~~~f~~~~gk~vevkrA~pk~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 233 (311)
T KOG4205|consen 154 KVTLQKFHDFNGKKVEVKRAIPKEVMQSTKSSVSTRGKGNNLGNGRTGFFLKKYFKGYGPVGMSDYGGRPVGRRYGPLFN 233 (311)
T ss_pred eecccceeeecCceeeEeeccchhhccccccccccccccccccccccccccchhccccCccccccccccccccccccccC
Confidence 9999888999999999999999998776543211 1 2234434444455566677777666666666655 4444444
Q ss_pred CccCCcCCCC
Q 011518 238 GRSGFTTIGP 247 (484)
Q Consensus 238 Grgg~g~~Gg 247 (484)
.+.++..++.
T Consensus 234 ~g~g~~~~~~ 243 (311)
T KOG4205|consen 234 GGSGYPEFGN 243 (311)
T ss_pred CCccccccCc
Confidence 4556666653
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=3.7e-30 Score=277.48 Aligned_cols=178 Identities=22% Similarity=0.465 Sum_probs=154.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|| ++.+.|.+|.|+|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 4679999999999999999999999999999999999999999999999999999999999 88999999999998654
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
......... . .........++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|+
T Consensus 186 ~~p~a~~~~---~--~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 186 NMPQAQPII---D--MVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccccc---c--cccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 322111000 0 00111234579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
+||+.++ .+|+|+.|+|.++.++..
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~ 286 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPD 286 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCcc
Confidence 9999999 899999999999986543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=2.9e-29 Score=258.00 Aligned_cols=166 Identities=24% Similarity=0.497 Sum_probs=151.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||.++||+||+++|++||+|++|+|++|+.+++++|||||+|.++++|++|| +++..|.+++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4679999999999999999999999999999999999999999999999999999999999 88999999999999886
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
+... ....++|||+|||..+++++|+++|++||.|+.++|+.++.++.+++||||+|++.++|+
T Consensus 82 ~~~~----------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~ 145 (352)
T TIGR01661 82 PSSD----------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEAD 145 (352)
T ss_pred cccc----------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 5432 123468999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHh-hhhcC--eEEEEeecCCCC
Q 011518 162 KVLLKTF-HELNG--KMVEVKRAVPKE 185 (484)
Q Consensus 162 ~Al~~~~-~~l~G--r~I~V~~a~~k~ 185 (484)
+||+.++ ..+.+ ++|.|+++..+.
T Consensus 146 ~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 146 RAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHHhCCCccCCCceeEEEEECCCCC
Confidence 9999988 66666 678888887654
No 5
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-28 Score=248.74 Aligned_cols=178 Identities=26% Similarity=0.450 Sum_probs=145.3
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc-cceeeecccC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID-GRTVEAKKAV 81 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~-Gr~I~V~~a~ 81 (484)
-+.|||+.||.|+.|+||+.+|++.|+|.+++||+|+.++.+||||||.|+++++|++|| +++++|. ||.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 478999999999999999999999999999999999999999999999999999999999 7777664 6777665442
Q ss_pred CC----------Ccccc------------------------cccCC----------------------Ccc---------
Q 011518 82 PR----------DDQNI------------------------QNRNN----------------------SSI--------- 96 (484)
Q Consensus 82 ~~----------~~~~~------------------------~~~~~----------------------~~~--------- 96 (484)
.. .+.+. +.++. ...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 21 11000 00000 000
Q ss_pred -----c---CCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 97 -----H---GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 97 -----~---~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
. ......+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.+.++|.+|++.++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~n 314 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETN 314 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhc
Confidence 0 0001235688999999999999999999999999999999877 99999999999999999999
Q ss_pred -hhhcCeEEEEeecCCCCCCCCC
Q 011518 169 -HELNGKMVEVKRAVPKELSPGP 190 (484)
Q Consensus 169 -~~l~Gr~I~V~~a~~k~~~~~~ 190 (484)
++|+|..|+|.+|+|...++..
T Consensus 315 gkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 315 GKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred CceecCceEEEEecCChhhhccc
Confidence 9999999999999998765543
No 6
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.2e-30 Score=257.95 Aligned_cols=174 Identities=26% Similarity=0.477 Sum_probs=153.1
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh---hhcccccc--ceee
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDG--RTVE 76 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al---~~~~~i~G--r~I~ 76 (484)
|.+.-||||+.||+.++|+||+++|++||.|.+|.|++||.|+.+||||||+|.+.++|.+|+ .+.++|.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 456789999999999999999999999999999999999999999999999999999999998 34455655 6788
Q ss_pred ecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
|+++..+.+.. ...++|||+.|++.+||+||+++|.+||.|++|.|++|.. +.+||||||+|++
T Consensus 111 vk~Ad~E~er~---------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fst 174 (510)
T KOG0144|consen 111 VKYADGERERI---------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFST 174 (510)
T ss_pred ecccchhhhcc---------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEeh
Confidence 88876544322 3458999999999999999999999999999999999965 8899999999999
Q ss_pred HHHHHHHHHHHh--hhhcC--eEEEEeecCCCCCCCCCC
Q 011518 157 EEAVDKVLLKTF--HELNG--KMVEVKRAVPKELSPGPS 191 (484)
Q Consensus 157 ~e~A~~Al~~~~--~~l~G--r~I~V~~a~~k~~~~~~~ 191 (484)
.|.|..||+.++ +.+.| .+|.|++|.+++++..++
T Consensus 175 ke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 175 KEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKR 213 (510)
T ss_pred HHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHH
Confidence 999999999998 45655 589999999988876555
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3.5e-29 Score=266.50 Aligned_cols=179 Identities=25% Similarity=0.453 Sum_probs=156.0
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
|.+.++|||+|||+++|+++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++|| +++..|.+++|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 356789999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
............. .....+..++|||+|||..+|+++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|
T Consensus 166 ~~~~~~~~~~~~~----~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 166 QAEKNRAAKAATH----QPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred chhhhhhhhcccc----cCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 5433222111100 011112368999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
++|++.++ ..|.+++|+|.++...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999988 8999999999998743
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.96 E-value=8.2e-29 Score=254.61 Aligned_cols=183 Identities=21% Similarity=0.402 Sum_probs=150.9
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc--ceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G--r~I~V~~ 79 (484)
..++|||+|||+++++++|+++|++||+|+.++|+.++.++.+++||||+|.++++|++|| ++...+.+ ++|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999999888899999999999999999999 77777766 5677777
Q ss_pred cCCCCcccccccCC---------Cc-------------------------------------------------ccC---
Q 011518 80 AVPRDDQNIQNRNN---------SS-------------------------------------------------IHG--- 98 (484)
Q Consensus 80 a~~~~~~~~~~~~~---------~~-------------------------------------------------~~~--- 98 (484)
+............. .. ...
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 65433110000000 00 000
Q ss_pred ---------------CCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHH
Q 011518 99 ---------------SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (484)
Q Consensus 99 ---------------~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~A 163 (484)
.......++|||+|||+++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|.+|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00012234699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-hhhcCeEEEEeecCCCCC
Q 011518 164 LLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
|+.++ ..|.||+|+|.++..|..
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCCC
Confidence 99998 899999999999988764
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=2.5e-28 Score=262.86 Aligned_cols=174 Identities=28% Similarity=0.436 Sum_probs=137.0
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc-cceeeecccC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID-GRTVEAKKAV 81 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~-Gr~I~V~~a~ 81 (484)
.++|||+|||++++|++|+++|++||+|.+|+|++| .++++||||||+|.++|+|++|| ++...|. ++.|.|..+.
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 589999999999999999999999999999999999 68999999999999999999999 6666664 5555444332
Q ss_pred CCC----------ccc-----------------cc-------ccC----------------------CCcc---------
Q 011518 82 PRD----------DQN-----------------IQ-------NRN----------------------NSSI--------- 96 (484)
Q Consensus 82 ~~~----------~~~-----------------~~-------~~~----------------------~~~~--------- 96 (484)
... ..+ .. ... ....
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 100 000 00 000 0000
Q ss_pred -----c---CCCCCCccceEEecccccccchhHHHHHhhhc--CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHH
Q 011518 97 -----H---GSPGPARTKKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166 (484)
Q Consensus 97 -----~---~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~ 166 (484)
. ........++|||+|||++++||+|+++|++| |+|++|++++ +||||+|+++++|++||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHH
Confidence 0 00011235789999999999999999999999 9999998764 4999999999999999999
Q ss_pred Hh-hhhcCeEEEEeecCCCCCC
Q 011518 167 TF-HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 167 ~~-~~l~Gr~I~V~~a~~k~~~ 187 (484)
++ ++|++++|+|++++|+...
T Consensus 289 lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 289 LNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred hCCCEECCEEEEEEEccCCCcc
Confidence 88 8999999999999887643
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.3e-28 Score=234.70 Aligned_cols=178 Identities=25% Similarity=0.482 Sum_probs=154.3
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
+-.|||+.|..+++-|+||+.|.+||+|.+++|++|..|+++|||+||.|..+++|+.|| |+.+.|..|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 457999999999999999999999999999999999999999999999999999999999 999999999999999987
Q ss_pred CCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
+..........-...-....++.++|||+||+.-+||++|++.|++||.|.+|+|.+| +||+||+|++.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 7632221111111111223467799999999999999999999999999999999988 4699999999999999
Q ss_pred HHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 163 VLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 163 Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
||..++ +++.|+.|+|.|-+......
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred HHHHhcCceeCceEEEEeccccCCCCC
Confidence 999998 99999999999987665443
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=3.5e-27 Score=257.68 Aligned_cols=182 Identities=30% Similarity=0.518 Sum_probs=155.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc----cceeee
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID----GRTVEA 77 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~----Gr~I~V 77 (484)
+.++|||+|||+++||++|+++|++||+|++++|+++. +++++|||||+|+++++|++|+ ++...|. ++.|.|
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 45679999999999999999999999999999999985 7899999999999999999999 7888888 999999
Q ss_pred cccCCCCcccccccCCC--cccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeec
Q 011518 78 KKAVPRDDQNIQNRNNS--SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYD 155 (484)
Q Consensus 78 ~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~ 155 (484)
.++..+.+......... ............+|||+||++++++++|+++|++||.|++|+|+.| .++++||||||+|+
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeC
Confidence 88876654422111110 1111112345678999999999999999999999999999999999 67899999999999
Q ss_pred cHHHHHHHHHHHh-hhhcCeEEEEeecCCCCCC
Q 011518 156 SEEAVDKVLLKTF-HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 156 s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~ 187 (484)
+.++|++|++.++ +.|.|++|.|.++.+++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~ 367 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRKEQR 367 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCcHHH
Confidence 9999999999988 8999999999999887644
No 12
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.94 E-value=8.5e-27 Score=254.64 Aligned_cols=165 Identities=30% Similarity=0.506 Sum_probs=147.0
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCCC
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPRD 84 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~~ 84 (484)
.|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.++++|++|| ++...|.++.|+|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999 77788999999998875322
Q ss_pred cccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHH
Q 011518 85 DQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164 (484)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al 164 (484)
.. ......+|||+|||.++++++|+++|++||.|+.|+|+.|. ++++||||||+|+++++|++|+
T Consensus 82 ~~--------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~-~g~skg~afV~F~~~e~A~~Ai 146 (562)
T TIGR01628 82 SL--------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDE-NGKSRGYGFVHFEKEESAKAAI 146 (562)
T ss_pred cc--------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecC-CCCcccEEEEEECCHHHHHHHH
Confidence 11 11234679999999999999999999999999999999885 5789999999999999999999
Q ss_pred HHHh-hhhcCeEEEEeecCCCCC
Q 011518 165 LKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 165 ~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
++++ ..++++.|.|....++..
T Consensus 147 ~~lng~~~~~~~i~v~~~~~~~~ 169 (562)
T TIGR01628 147 QKVNGMLLNDKEVYVGRFIKKHE 169 (562)
T ss_pred HHhcccEecCceEEEeccccccc
Confidence 9998 899999999977655443
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.94 E-value=2.8e-26 Score=247.34 Aligned_cols=184 Identities=15% Similarity=0.281 Sum_probs=145.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhh------heeecccccccccceeEEEEeChhhHHHhh-hhccccccce
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLE------AVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRT 74 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~------v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~ 74 (484)
+.+.++|||+|||+++|+++|++||.++..+.. +.++.+....+.++||||+|.++++|++|| ++...|.++.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~g~~ 251 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYSNVF 251 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEeeCce
Confidence 567899999999999999999999998743221 223333334567899999999999999999 8999999999
Q ss_pred eeecccCCCCccccc-----ccCCC--------cccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeC
Q 011518 75 VEAKKAVPRDDQNIQ-----NRNNS--------SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH 141 (484)
Q Consensus 75 I~V~~a~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~ 141 (484)
|.|.+.......... ..... ...........++|||+|||+.+++++|+++|++||.|+.|.|++++
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 331 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI 331 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC
Confidence 999765433211100 00000 00011123456799999999999999999999999999999999999
Q ss_pred CCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 142 NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 142 ~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
.+++++|||||+|.+.++|++||+.++ ..|.+++|.|+++....
T Consensus 332 ~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 332 ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 999999999999999999999999988 89999999999986543
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.1e-25 Score=211.67 Aligned_cols=170 Identities=24% Similarity=0.484 Sum_probs=153.7
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
++..+.|.|--||.++|+|||+.+|...|+|++|++++||.++.+-||+||.|.++++|++|+ ++...+..++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345678999999999999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHH
Q 011518 80 AVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (484)
Q Consensus 80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (484)
+.|..+. .+...|||.+||+++|..||+++|++||.|..-+|+.|..++.+||.+||.|+-.++
T Consensus 118 ARPSs~~----------------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~E 181 (360)
T KOG0145|consen 118 ARPSSDS----------------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIE 181 (360)
T ss_pred ccCChhh----------------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhH
Confidence 9876543 445679999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-hhhcC--eEEEEeecCCCCCC
Q 011518 160 VDKVLLKTF-HELNG--KMVEVKRAVPKELS 187 (484)
Q Consensus 160 A~~Al~~~~-~~l~G--r~I~V~~a~~k~~~ 187 (484)
|+.||+.++ +.--| .+|.|+++..+..+
T Consensus 182 Ae~AIk~lNG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 182 AEEAIKGLNGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred HHHHHHhccCCCCCCCCCCeEEEecCCcccc
Confidence 999998877 44333 58999999766443
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.92 E-value=3.6e-25 Score=200.72 Aligned_cols=170 Identities=28% Similarity=0.455 Sum_probs=153.1
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
...+|||+||+..++|+.|.|+|-+.|+|+++.|.+|+.+...+|||||||.++|+|+-|+ ++...+.+|+|+|.++.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 3679999999999999999999999999999999999999999999999999999999999 88999999999999886
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceee-EEEEeeCCCCCccceeeeeeccHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.... ...-..+|||+||.+.++|..|.++|+.||.|.+ -+|++|..|+.+++|+||.|++.|++
T Consensus 88 ~~~~---------------nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 88 AHQK---------------NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred cccc---------------cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 2111 1123378999999999999999999999999765 58999999999999999999999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
++|++.++ ..++.++|+|..+..+..+.
T Consensus 153 d~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 153 DAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred HHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99999999 89999999999987765443
No 16
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7e-25 Score=225.65 Aligned_cols=181 Identities=25% Similarity=0.458 Sum_probs=150.8
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.-+|.|+||||.+.+++|+.+|+.||.|.+|.|.+.+..+.+ |||||+|.+..+|++|| ++.+.|++|+|.|.||.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklc-GFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLC-GFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCcc-ceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 568999999999999999999999999999999988766666 99999999999999999 899999999999999977
Q ss_pred CCcccccc-------------------c-------------------C--C----------------CcccC---C----
Q 011518 83 RDDQNIQN-------------------R-------------------N--N----------------SSIHG---S---- 99 (484)
Q Consensus 83 ~~~~~~~~-------------------~-------------------~--~----------------~~~~~---~---- 99 (484)
+..-+... . + . ..... +
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 64211100 0 0 0 00000 0
Q ss_pred -----------CCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH-
Q 011518 100 -----------PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT- 167 (484)
Q Consensus 100 -----------~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~- 167 (484)
......++|||+|||+++|+|+|+++|++||.|..+.|+.++.|++++|.|||.|.+..++++||+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 00011278999999999999999999999999999999999999999999999999999999999986
Q ss_pred ---h---hhhcCeEEEEeecCCCCC
Q 011518 168 ---F---HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 168 ---~---~~l~Gr~I~V~~a~~k~~ 186 (484)
. ..|+||.|.|..|.++..
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred ccCCCceEEEeccEEeeeeccchHH
Confidence 2 378999999999988743
No 17
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.3e-24 Score=233.16 Aligned_cols=175 Identities=21% Similarity=0.336 Sum_probs=140.7
Q ss_pred ccccceEEeeecc-CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 3 MELGKLFIGGISW-DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~-~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
...++|||+|||+ ++|+++|+++|+.||.|++|+|++++ ++||||+|.++++|++|| ++.+.|.+++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 3567999999998 69999999999999999999999873 589999999999999999 899999999999988
Q ss_pred cCCCCccccccc------------CCCccc--CCC-------CCCccceEEecccccccchhHHHHHhhhcCc--eeeEE
Q 011518 80 AVPRDDQNIQNR------------NNSSIH--GSP-------GPARTKKIFVGGLASTVTESDFKKYFDQFGI--ITDVV 136 (484)
Q Consensus 80 a~~~~~~~~~~~------------~~~~~~--~~~-------~~~~~~~LfVgnLp~~~teedL~~~F~~~G~--I~~v~ 136 (484)
++.+........ ...... ..+ ...+.++|||.|||.+++|++|+++|++||. |+.|+
T Consensus 348 s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik 427 (481)
T TIGR01649 348 SKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFK 427 (481)
T ss_pred cccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEE
Confidence 755422111100 000000 000 1135679999999999999999999999998 88888
Q ss_pred EEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeE------EEEeecCCC
Q 011518 137 VMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM------VEVKRAVPK 184 (484)
Q Consensus 137 i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~------I~V~~a~~k 184 (484)
|..++. ..+++|||+|++.++|.+||..++ ++|.++. |+|.+++++
T Consensus 428 ~~~~~~--~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 428 FFPKDN--ERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred EecCCC--CcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 865442 357899999999999999999998 8999885 899888764
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.6e-24 Score=232.45 Aligned_cols=168 Identities=15% Similarity=0.243 Sum_probs=138.8
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh----hhccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al----~~~~~i~Gr~I~V~~a 80 (484)
+++|||+|||+++||++|+++|++||+|++|+|+++ |+||||+|.++++|++|| ++...|.+++|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 689999999999999999999999999999999864 479999999999999999 2567899999999998
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
..++........ .....+....+|||.||++++|+++|+++|++||.|++|+|++++. +++|||+|++.++|
T Consensus 76 ~~~~~~~~~~~~----~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A 147 (481)
T TIGR01649 76 TSQEIKRDGNSD----FDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSA 147 (481)
T ss_pred CCcccccCCCCc----ccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHH
Confidence 765422211100 0111223456899999999999999999999999999999987643 46899999999999
Q ss_pred HHHHHHHh-hhhcC--eEEEEeecCCCCC
Q 011518 161 DKVLLKTF-HELNG--KMVEVKRAVPKEL 186 (484)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~~k~~ 186 (484)
++|++.++ .+|.+ +.|+|.+++++..
T Consensus 148 ~~A~~~Lng~~i~~~~~~l~v~~sk~~~l 176 (481)
T TIGR01649 148 QHAKAALNGADIYNGCCTLKIEYAKPTRL 176 (481)
T ss_pred HHHHHHhcCCcccCCceEEEEEEecCCCc
Confidence 99999998 78754 5899999887543
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.91 E-value=4.8e-24 Score=229.96 Aligned_cols=180 Identities=19% Similarity=0.362 Sum_probs=145.9
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++|+++|+++|+.||+|+.+.|++++.+++++|||||+|.++++|++|| ++...|.++.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 3579999999999999999999999999999999999989999999999999999999999 89999999999999886
Q ss_pred CCCcccccccCC---------Ccc---cCCCCCCccceEEecccccc----------cchhHHHHHhhhcCceeeEEEEe
Q 011518 82 PRDDQNIQNRNN---------SSI---HGSPGPARTKKIFVGGLAST----------VTESDFKKYFDQFGIITDVVVMY 139 (484)
Q Consensus 82 ~~~~~~~~~~~~---------~~~---~~~~~~~~~~~LfVgnLp~~----------~teedL~~~F~~~G~I~~v~i~~ 139 (484)
............ ... .......++++|+|.||... ...++|+++|++||.|+.|+|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 543222111110 000 00112235688999999642 12368999999999999999987
Q ss_pred eC---CCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 140 DH---NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 140 d~---~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
+. .+...+|++||+|+++++|++||+.|+ ..|.|+.|.|.+...
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 53 334568999999999999999999999 899999999988654
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.91 E-value=8.9e-25 Score=210.48 Aligned_cols=146 Identities=25% Similarity=0.540 Sum_probs=134.9
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
-+|||+|||.++++.+|+.+|++||+|++|+|+++ |+||..+|+++|++|| ++.-+|++..|.|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999999999999986 9999999999999999 7888999999999987765
Q ss_pred CcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHH
Q 011518 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~A 163 (484)
. ....+|+|+||.+.|+.+||++.|++||.|++|+|++| |+||+|+..++|..|
T Consensus 75 s------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~a 128 (346)
T KOG0109|consen 75 S------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEA 128 (346)
T ss_pred C------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHH
Confidence 2 23578999999999999999999999999999999977 999999999999999
Q ss_pred HHHHh-hhhcCeEEEEeecCCCC
Q 011518 164 LLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
|..++ .+|+|++++|.....+-
T Consensus 129 ir~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 129 IRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred Hhcccccccccceeeeeeecccc
Confidence 99888 99999999999886654
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=5.9e-24 Score=218.86 Aligned_cols=187 Identities=21% Similarity=0.433 Sum_probs=157.3
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
|+++-.||||++||++++.++|.++|+.+|+|..|.++.++.+..+|||+||.|+-.|++++|+ .....+.+|.|.|.
T Consensus 1 ~n~~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~ 80 (678)
T KOG0127|consen 1 ENKSGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVD 80 (678)
T ss_pred CCCCCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccc
Confidence 4555689999999999999999999999999999999999989999999999999999999999 66677999999999
Q ss_pred ccCCCCccccccc-CC-CcccC----CC----CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccc
Q 011518 79 KAVPRDDQNIQNR-NN-SSIHG----SP----GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRG 148 (484)
Q Consensus 79 ~a~~~~~~~~~~~-~~-~~~~~----~~----~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG 148 (484)
.+.++...+.... .. ..... .+ ...+.-+|.|+|||+.|.++||+.+|+.||.|.+|.|++.+. ++-+|
T Consensus 81 ~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcG 159 (678)
T KOG0127|consen 81 PAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCG 159 (678)
T ss_pred cccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccc
Confidence 9887665442111 11 00000 00 112245899999999999999999999999999999997766 45569
Q ss_pred eeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 149 FGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 149 ~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
||||.|....+|.+||+.++ ++|+||+|.|.||.++..-.
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye 200 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYE 200 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccccc
Confidence 99999999999999999999 99999999999999986543
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=8.9e-23 Score=201.37 Aligned_cols=176 Identities=23% Similarity=0.488 Sum_probs=152.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.|+|||+-|..++.|+.|+..|.+||+|++|.+-.|+.|++.|+||||||+-+|.|+.|+ ++...+.+|.|+|.+...
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999 899999999999985432
Q ss_pred CCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
....+ ...+. ...+...-.+|||..++++++|+||+.+|+.||+|++|.+.+++.....|||+||+|.+..+.+.
T Consensus 193 mpQAQ--piID~---vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~e 267 (544)
T KOG0124|consen 193 MPQAQ--PIIDM---VQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSE 267 (544)
T ss_pred Ccccc--hHHHH---HHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHH
Confidence 21111 00000 00011234789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhhcCeEEEEeecCCCC
Q 011518 163 VLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 163 Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
||..|| .+|.|..|+|-++..+.
T Consensus 268 AiasMNlFDLGGQyLRVGk~vTPP 291 (544)
T KOG0124|consen 268 AIASMNLFDLGGQYLRVGKCVTPP 291 (544)
T ss_pred HhhhcchhhcccceEecccccCCC
Confidence 999999 89999999998876544
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.87 E-value=9.1e-22 Score=209.60 Aligned_cols=176 Identities=22% Similarity=0.367 Sum_probs=140.8
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+|||.++||++|+++|++||+|+.|.|++++.++++++||||+|.+.++|++|| +++..|.+++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 579999999999999999999999999999999999988999999999999999999999 889999999999998643
Q ss_pred CCcccccc------------------------------cC---------------------CC--cc-------------
Q 011518 83 RDDQNIQN------------------------------RN---------------------NS--SI------------- 96 (484)
Q Consensus 83 ~~~~~~~~------------------------------~~---------------------~~--~~------------- 96 (484)
........ .. .. ..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 21100000 00 00 00
Q ss_pred -----cCCC---CCCccceEEecccccccc----------hhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHH
Q 011518 97 -----HGSP---GPARTKKIFVGGLASTVT----------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (484)
Q Consensus 97 -----~~~~---~~~~~~~LfVgnLp~~~t----------eedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e 158 (484)
...+ .....++|+|.||....+ ++||+++|++||.|++|.|... ..+|++||+|++++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~----~~~G~~fV~F~~~e 421 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK----NSAGKIYLKFSSVD 421 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC----CCceeEEEEECCHH
Confidence 0000 123567899999955443 3689999999999999988633 45789999999999
Q ss_pred HHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 159 AVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
+|++|++.|+ ..|+|+.|.|.+....
T Consensus 422 ~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 422 AALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 9999999999 8999999999987543
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=2.4e-21 Score=184.12 Aligned_cols=181 Identities=27% Similarity=0.444 Sum_probs=149.1
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccc--ceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDG--RTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~G--r~I~V~~ 79 (484)
+.-.|||.+||+.+|.+||+++|++||.|..-+|+.|..|+.+||.+||.|..+++|+.|| ++.+.-.+ .+|.|+.
T Consensus 126 k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKF 205 (360)
T KOG0145|consen 126 KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKF 205 (360)
T ss_pred cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEe
Confidence 4568999999999999999999999999999999999999999999999999999999999 66665544 5788877
Q ss_pred cCCCCccccc-----------ccCCCccc------------------------------------CCCCCCccceEEecc
Q 011518 80 AVPRDDQNIQ-----------NRNNSSIH------------------------------------GSPGPARTKKIFVGG 112 (484)
Q Consensus 80 a~~~~~~~~~-----------~~~~~~~~------------------------------------~~~~~~~~~~LfVgn 112 (484)
+......... .+.....+ -+..+...-+|||-|
T Consensus 206 annPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYN 285 (360)
T KOG0145|consen 206 ANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYN 285 (360)
T ss_pred cCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEe
Confidence 6533211100 00000000 011122346899999
Q ss_pred cccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 113 LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 113 Lp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
|.+++.|.-|-++|.+||.|+.|+|++|..|.+.|||+||.+.+-++|..||..++ ..|.+|.|.|.+...|
T Consensus 286 Lspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 286 LSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred cCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999 8999999999987654
No 25
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.86 E-value=1.4e-19 Score=185.67 Aligned_cols=174 Identities=21% Similarity=0.407 Sum_probs=142.9
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~~ 83 (484)
...|-+++|||++|++||.+||+.|. |+.+++.+ .+++..|-|||||+++|++++|| ++...+..|.|+|..+...
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 45688999999999999999999995 78866655 48999999999999999999999 8888889999999988776
Q ss_pred CcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceee-EEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD-VVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~-v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
+........... .......|.+++||+.||++||.++|+..-.|.. |.++.|+ ..++.|.|||.|++.++|++
T Consensus 87 e~d~~~~~~g~~-----s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 87 EADWVMRPGGPN-----SSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred cccccccCCCCC-----CCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHH
Confidence 653332221111 1134567999999999999999999999877766 4455555 47799999999999999999
Q ss_pred HHHHHhhhhcCeEEEEeecCCCCCC
Q 011518 163 VLLKTFHELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 163 Al~~~~~~l~Gr~I~V~~a~~k~~~ 187 (484)
||.++.+.|..|.|+|.++...+.+
T Consensus 161 Al~rhre~iGhRYIEvF~Ss~~e~~ 185 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRSSRAEVK 185 (510)
T ss_pred HHHHHHHhhccceEEeehhHHHHHH
Confidence 9999999999999999887665544
No 26
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1e-21 Score=203.52 Aligned_cols=182 Identities=23% Similarity=0.441 Sum_probs=156.3
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
|+|.|+||+-.|+..+++.+|.+||+.+|+|.+|.|+.|+.+.++||.|+|+|.|.+....|| +.++.+.+.+|.|+..
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLS 255 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEeccc
Confidence 678999999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
...+........ .........+..+|||+||+.++++++|+.+|+.||.|+.|.+++|.+|+++|||+||+|.+.++|
T Consensus 256 Eaeknr~a~~s~--a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 256 EAEKNRAANASP--ALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred HHHHHHHHhccc--cccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 543332111111 111111123344599999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
++|+++++ .+|.|+.|+|.....+.
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeec
Confidence 99999999 89999999998765544
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3.1e-21 Score=184.02 Aligned_cols=184 Identities=21% Similarity=0.422 Sum_probs=150.6
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhc-ccccc--ceeeec
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQK-HMIDG--RTVEAK 78 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~-~~i~G--r~I~V~ 78 (484)
|+|||||+.|.+.-.|||++.+|..||+|++|.+++.+ .+.+||||||+|.++.+|+.|| ++. .++.+ ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 68999999999999999999999999999999999986 7899999999999999999999 443 33433 456777
Q ss_pred ccCCCCcccccccC------------------------------------------------------------------
Q 011518 79 KAVPRDDQNIQNRN------------------------------------------------------------------ 92 (484)
Q Consensus 79 ~a~~~~~~~~~~~~------------------------------------------------------------------ 92 (484)
.++..+++..+.-.
T Consensus 97 ~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A 176 (371)
T KOG0146|consen 97 FADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAA 176 (371)
T ss_pred eccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccccc
Confidence 76654421110000
Q ss_pred ------------C-----------Ccc------------------------------c----------------------
Q 011518 93 ------------N-----------SSI------------------------------H---------------------- 97 (484)
Q Consensus 93 ------------~-----------~~~------------------------------~---------------------- 97 (484)
. ... .
T Consensus 177 ~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aa 256 (371)
T KOG0146|consen 177 APVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAA 256 (371)
T ss_pred CCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhh
Confidence 0 000 0
Q ss_pred ------------C---------CCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 98 ------------G---------SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 98 ------------~---------~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
. ..+.++.+.|||-.||.+..+.||.++|-.||.|+..+|..|+.|+++|+|+||.|++
T Consensus 257 ypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDN 336 (371)
T KOG0146|consen 257 YPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDN 336 (371)
T ss_pred cchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCC
Confidence 0 0012345789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 157 EEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 157 ~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
+.++++||..|| ..|.=|+|+|.+.+||+..+
T Consensus 337 p~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 337 PASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred chhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 999999999999 89999999999999987543
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.5e-20 Score=191.45 Aligned_cols=154 Identities=29% Similarity=0.468 Sum_probs=140.5
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
..|||+ +++||..|.++|+++++|++|+|.+|. | +-|||||.|.++++|++|| ++-..+.+++|++-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 899999999999999999999999997 6 9999999999999999999 8888999999999887643
Q ss_pred CcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHH
Q 011518 84 DDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 163 (484)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~A 163 (484)
... |||.||++.++..+|.++|+.||.|+.|++.+|++ + ++|| ||+|+++++|++|
T Consensus 76 ~~~---------------------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~a 131 (369)
T KOG0123|consen 76 PSL---------------------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKA 131 (369)
T ss_pred Cce---------------------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHH
Confidence 221 99999999999999999999999999999999976 3 9999 9999999999999
Q ss_pred HHHHh-hhhcCeEEEEeecCCCCCCCC
Q 011518 164 LLKTF-HELNGKMVEVKRAVPKELSPG 189 (484)
Q Consensus 164 l~~~~-~~l~Gr~I~V~~a~~k~~~~~ 189 (484)
|++++ ..+.+++|.|....+++.+..
T Consensus 132 i~~~ng~ll~~kki~vg~~~~~~er~~ 158 (369)
T KOG0123|consen 132 IEKLNGMLLNGKKIYVGLFERKEEREA 158 (369)
T ss_pred HHHhcCcccCCCeeEEeeccchhhhcc
Confidence 99999 899999999998877766543
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.82 E-value=1.8e-20 Score=198.88 Aligned_cols=174 Identities=25% Similarity=0.417 Sum_probs=146.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc---ccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t---g~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
..++|||.||++++|.++|++.|...|.|+.|.|.+.+.. -.++||+||+|.++++|++|+ ++...++++.|+|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 3445999999999999999999999999999988765422 146699999999999999999 67899999999999
Q ss_pred ccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHH
Q 011518 79 KAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (484)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e 158 (484)
.+..+...... ...+......+|+|+|||+..+..+|+++|..||.|..|+|++.......+|||||+|-+++
T Consensus 594 ~S~~k~~~~~g-------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ 666 (725)
T KOG0110|consen 594 ISENKPASTVG-------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPR 666 (725)
T ss_pred eccCccccccc-------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcH
Confidence 88732222221 11112233679999999999999999999999999999999987666778999999999999
Q ss_pred HHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 159 AVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 159 ~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
+|.+|++.+. +.|-||+|.+.||..-
T Consensus 667 ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 667 EAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHHHHHhhcccceechhhheehhccc
Confidence 9999999988 8999999999998764
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.5e-20 Score=186.03 Aligned_cols=181 Identities=22% Similarity=0.429 Sum_probs=149.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh-cccccc--ceeeec
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ-KHMIDG--RTVEAK 78 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~-~~~i~G--r~I~V~ 78 (484)
+++||||+-|++.+||.||+++|++||.|++|.|++|+ .+.+||||||+|.++|.|..|| ++ .+++.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 47899999999999999999999999999999999996 7899999999999999999999 33 345555 688999
Q ss_pred ccCCCCcccccccCC-----------------------------------------------------------------
Q 011518 79 KAVPRDDQNIQNRNN----------------------------------------------------------------- 93 (484)
Q Consensus 79 ~a~~~~~~~~~~~~~----------------------------------------------------------------- 93 (484)
+|++++++..+....
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 998776332111000
Q ss_pred ---------------------C-------c---------c--------c-------------------------------
Q 011518 94 ---------------------S-------S---------I--------H------------------------------- 97 (484)
Q Consensus 94 ---------------------~-------~---------~--------~------------------------------- 97 (484)
. . . .
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0 0 0 0
Q ss_pred -------------------------------------------------------CCCCCCccceEEecccccccchhHH
Q 011518 98 -------------------------------------------------------GSPGPARTKKIFVGGLASTVTESDF 122 (484)
Q Consensus 98 -------------------------------------------------------~~~~~~~~~~LfVgnLp~~~teedL 122 (484)
...+.+....|||.+||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 0000112257999999999999999
Q ss_pred HHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 123 KKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 123 ~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
-..|..||.|+..++..|+.|+-+|+|+||.|++..+|.+||..|+ ..|..++++|...+.+.
T Consensus 442 ~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 442 IATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred HHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 9999999999999999999999999999999999999999999999 89999999998876654
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=5.5e-20 Score=176.00 Aligned_cols=140 Identities=22% Similarity=0.457 Sum_probs=119.6
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccC
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~ 81 (484)
+.+-|+|||+||..++||+-|..||+++|+|+.|+|+.| .|+|.++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~---------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD---------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh---------------------------------hhcccccc
Confidence 457899999999999999999999999999999999987 23334443
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
....+. .+.......|||+.|...++-|+||+.|.+||+|.+++|++|.+|+++|||+||.|.+.++|+
T Consensus 50 ~p~nQs-----------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAE 118 (321)
T KOG0148|consen 50 APGNQS-----------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAE 118 (321)
T ss_pred CcccCC-----------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHH
Confidence 321110 011122467999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k~ 185 (484)
+||+.|+ ..|..|.|+-.||..|.
T Consensus 119 nAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 119 NAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHHhCCeeeccceeeccccccCc
Confidence 9999999 89999999999998776
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=5.2e-19 Score=182.77 Aligned_cols=170 Identities=23% Similarity=0.460 Sum_probs=149.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+|...|||.||++++|.++|.++|+.||+|++|+|+.++ ++ +||| ||+|+++++|++|+ +++..+.+++|.|...
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 456669999999999999999999999999999999996 45 9999 99999999999999 8999999999999888
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
..++++.....+ ...+...++|.+++.++++++|+++|.++|.|+.+.++.+.. +++++|+||.|+++++|
T Consensus 151 ~~~~er~~~~~~--------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~-g~~~~~gfv~f~~~e~a 221 (369)
T KOG0123|consen 151 ERKEEREAPLGE--------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSI-GKSKGFGFVNFENPEDA 221 (369)
T ss_pred cchhhhcccccc--------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCC-CCCCCccceeecChhHH
Confidence 776654433222 123456799999999999999999999999999999999966 55999999999999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
+.|++.++ ..+.++.+.|..+..+
T Consensus 222 ~~av~~l~~~~~~~~~~~V~~aqkk 246 (369)
T KOG0123|consen 222 KKAVETLNGKIFGDKELYVGRAQKK 246 (369)
T ss_pred HHHHHhccCCcCCccceeecccccc
Confidence 99999999 7888899999888764
No 33
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=3.2e-18 Score=155.77 Aligned_cols=156 Identities=20% Similarity=0.316 Sum_probs=127.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+.+++|||+|||.++-|.||+++|-+||.|.+|.|...+ ....||||+|+++.+|++|| .+...+++..|.|+.+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 467999999999999999999999999999999987654 34579999999999999999 8889999999999988
Q ss_pred CCCCcccccccC----------CCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCcccee
Q 011518 81 VPRDDQNIQNRN----------NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFG 150 (484)
Q Consensus 81 ~~~~~~~~~~~~----------~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~a 150 (484)
..-.......-. .......+......+|.|.+||.+-+|+|||++..+-|.|....+.+| +.+
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~G 153 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVG 153 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cce
Confidence 654321111000 001111223344578999999999999999999999999999999877 378
Q ss_pred eeeeccHHHHHHHHHHHh
Q 011518 151 FITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 151 FV~F~s~e~A~~Al~~~~ 168 (484)
.|+|...|+++-|+.++.
T Consensus 154 vV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 154 VVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred eeeeeehhhHHHHHHhhc
Confidence 999999999999999877
No 34
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=7.3e-18 Score=152.68 Aligned_cols=85 Identities=31% Similarity=0.589 Sum_probs=79.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+|||++++|+||+++|++||.|++|+|++|+.++++||||||+|+++++|++||+.++ ++|++++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456789999999999999999999999999999999999999999999999999999999999887 8999999999999
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.++...
T Consensus 112 ~~~~~~ 117 (144)
T PLN03134 112 NDRPSA 117 (144)
T ss_pred CcCCCC
Confidence 876543
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.73 E-value=3.5e-17 Score=177.28 Aligned_cols=78 Identities=19% Similarity=0.495 Sum_probs=74.2
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|.++++|++|| ++...|.|+.|+|.++.+
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 479999999999999999999999999999999999989999999999999999999999 899999999999988764
No 36
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.71 E-value=7.9e-17 Score=162.70 Aligned_cols=177 Identities=25% Similarity=0.399 Sum_probs=144.5
Q ss_pred cccceEEeeeccCCchHHHHHHHHh-hhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~-~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
..|.+||.|||+++.|++||++|.+ .|+|+.|.++.|. .+++||||.|||+++|.++||+ ++++.+.+|+|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 4567999999999999999999975 8999999999995 8999999999999999999999 9999999999999887
Q ss_pred CCCCcccccc------------------------------------------c----CCC--------------------
Q 011518 81 VPRDDQNIQN------------------------------------------R----NNS-------------------- 94 (484)
Q Consensus 81 ~~~~~~~~~~------------------------------------------~----~~~-------------------- 94 (484)
...+..+... + +..
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 5532111000 0 000
Q ss_pred ----cccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h
Q 011518 95 ----SIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H 169 (484)
Q Consensus 95 ----~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~ 169 (484)
..+ ...++...++||.||.+.+....|++.|.-.|.|+.|.+-.|++ +.++|+|.|+|+.+-+|..||.+++ .
T Consensus 202 ~Flr~~h-~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKe-G~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 202 SFLRSLH-IFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKE-GNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhcc-CCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccc-cccCCeeEEEecchHHHHHHHHhhccC
Confidence 000 01234456899999999999999999999999999999999987 6899999999999999999999888 5
Q ss_pred hhcCeEEEEeecCC
Q 011518 170 ELNGKMVEVKRAVP 183 (484)
Q Consensus 170 ~l~Gr~I~V~~a~~ 183 (484)
-+-.++..|+...-
T Consensus 280 g~~~~~~~~Rl~~~ 293 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRI 293 (608)
T ss_pred CCccccceeecccc
Confidence 56667777776543
No 37
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=5e-17 Score=154.29 Aligned_cols=160 Identities=24% Similarity=0.459 Sum_probs=128.3
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
.+|||++||+.+.+++|++||..||.|.+|.++. +|+||+|.++.+|+.|+ ++...|.+..+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~--------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN--------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec--------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 5899999999999999999999999999988875 58999999999999999 8888888888877777643
Q ss_pred CcccccccC----CCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHH
Q 011518 84 DDQNIQNRN----NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEA 159 (484)
Q Consensus 84 ~~~~~~~~~----~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~ 159 (484)
....-.... .......++....+.|.|.+|+..+.|++|+++|.++|+++..++ .+.++||+|+++++
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~d 145 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQED 145 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhh
Confidence 222211000 001111223345578999999999999999999999999965554 23489999999999
Q ss_pred HHHHHHHHh-hhhcCeEEEEeec
Q 011518 160 VDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 160 A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
+++||++++ .+|.+++|+|...
T Consensus 146 a~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 146 AKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hhhcchhccchhhcCceeeeccc
Confidence 999999999 8999999999443
No 38
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=8.9e-17 Score=145.57 Aligned_cols=82 Identities=43% Similarity=0.806 Sum_probs=77.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||+|||+++||++|+++|++||+|++|+|++|+.|+++|+||||+|+++++|++|| ++.+.|++++|+|+++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 4679999999999999999999999999999999999999999999999999999999999 78899999999999987
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
++..
T Consensus 113 ~~~~ 116 (144)
T PLN03134 113 DRPS 116 (144)
T ss_pred cCCC
Confidence 6543
No 39
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.65 E-value=1.3e-15 Score=143.51 Aligned_cols=168 Identities=18% Similarity=0.337 Sum_probs=132.6
Q ss_pred cceEEeeeccCCchHHHHH----HHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 6 GKLFIGGISWDTNEDRLRD----YFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e----~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
.||||.||+..+..+||++ +|++||+|.+|...+ |.+.||-|||.|++.+.|..|+ +++-.+.+++++|.+
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 3999999999999999999 999999999888876 4578999999999999999999 888999999999999
Q ss_pred cCCCCccccccc-------------------CCCcc-----------cC----CCCCCccceEEecccccccchhHHHHH
Q 011518 80 AVPRDDQNIQNR-------------------NNSSI-----------HG----SPGPARTKKIFVGGLASTVTESDFKKY 125 (484)
Q Consensus 80 a~~~~~~~~~~~-------------------~~~~~-----------~~----~~~~~~~~~LfVgnLp~~~teedL~~~ 125 (484)
|..+.+.-.+.+ +.... .. .....+...||+.|||..++.+.|..+
T Consensus 87 A~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~l 166 (221)
T KOG4206|consen 87 AKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDL 166 (221)
T ss_pred ccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHH
Confidence 876554322210 00000 00 112345678999999999999999999
Q ss_pred hhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc-CeEEEEeec
Q 011518 126 FDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN-GKMVEVKRA 181 (484)
Q Consensus 126 F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~-Gr~I~V~~a 181 (484)
|++|.-.++|+++..+ ++.|||+|.++..+..|...++ ..+. ...+.|..+
T Consensus 167 f~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 167 FEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred HhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 9999999999988653 4589999999998888887665 3332 666666655
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.60 E-value=2.5e-15 Score=156.30 Aligned_cols=173 Identities=24% Similarity=0.449 Sum_probs=130.2
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+||..++||++|+.+|++||.|+.|.+++|..|+++|||+||+|.++++|++|+ ++..+|.|+.|+|.....
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 345999999999999999999999999999999999889999999999999999999998 888999999998754322
Q ss_pred CCccccc---c---c----C-----C-------------Cc----------------------------ccCCCCC----
Q 011518 83 RDDQNIQ---N---R----N-----N-------------SS----------------------------IHGSPGP---- 102 (484)
Q Consensus 83 ~~~~~~~---~---~----~-----~-------------~~----------------------------~~~~~~~---- 102 (484)
+...... . . . . .. .....+.
T Consensus 358 r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p 437 (549)
T KOG0147|consen 358 RVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASP 437 (549)
T ss_pred ecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccc
Confidence 2211100 0 0 0 0 00 0000011
Q ss_pred ---CccceEEecccc--cccc--------hhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-
Q 011518 103 ---ARTKKIFVGGLA--STVT--------ESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF- 168 (484)
Q Consensus 103 ---~~~~~LfVgnLp--~~~t--------eedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~- 168 (484)
.++.++.|.|+= .+.| .|||.+.+.+||.|..|.| |++ +-|+.||.|.+.++|..|+..++
T Consensus 438 ~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~v--d~n---s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 438 AFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFV--DKN---SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred ccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEE--ccC---CCceEEEecCcHHHHHHHHHHHhh
Confidence 344566666662 2222 2678888899999977665 433 34899999999999999999999
Q ss_pred hhhcCeEEEEeecC
Q 011518 169 HELNGKMVEVKRAV 182 (484)
Q Consensus 169 ~~l~Gr~I~V~~a~ 182 (484)
..|.+|.|++++-.
T Consensus 513 rWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 513 RWFAGRMITAKYLP 526 (549)
T ss_pred hhhccceeEEEEee
Confidence 89999999998753
No 41
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=6e-16 Score=146.22 Aligned_cols=79 Identities=41% Similarity=0.887 Sum_probs=74.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
..+||||++|+|++++|+|+++|++||+|++++|+.|+.|+|+|||+||+|+|.|+|++|+ .-+..|+||+..++.|.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 4679999999999999999999999999999999999999999999999999999999999 567899999999988754
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=6e-15 Score=142.53 Aligned_cols=142 Identities=26% Similarity=0.513 Sum_probs=113.7
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+|||+++|+++|+++|.+||+|..|.|..++.++++++||||+|.++++|.+|+ ++...|.++.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 489999999999999999999999999999999999889999999999999999999999 777999999999999653
Q ss_pred ----CCccccc----ccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCc
Q 011518 83 ----RDDQNIQ----NRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRP 146 (484)
Q Consensus 83 ----~~~~~~~----~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~ 146 (484)
+...... ..................+++.+++..++++++..+|..++.+..+.+.........
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIP 266 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCccc
Confidence 2211100 000111112233456678999999999999999999999999977777655443333
No 43
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=4.6e-15 Score=140.26 Aligned_cols=81 Identities=35% Similarity=0.622 Sum_probs=77.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
..-+||||++|+|+++.|+|+++||+||+|++++|+.|+.++++|||+||+|.+.++|.+|++..+..|+||+..|++|.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 011518 183 P 183 (484)
Q Consensus 183 ~ 183 (484)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 5
No 44
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.56 E-value=9e-15 Score=150.43 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=79.2
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|||++||+++||++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++ ++|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999999999999999999999999999999888 89999999999
Q ss_pred ecCCCC
Q 011518 180 RAVPKE 185 (484)
Q Consensus 180 ~a~~k~ 185 (484)
++++..
T Consensus 183 ~a~p~~ 188 (346)
T TIGR01659 183 YARPGG 188 (346)
T ss_pred cccccc
Confidence 987643
No 45
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=1.7e-14 Score=149.36 Aligned_cols=186 Identities=23% Similarity=0.346 Sum_probs=131.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc--ccccc---eeEEEEeChhhHHHhhhhccccccceee
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT--GRARG---FGFIVFADPAVAERVVMQKHMIDGRTVE 76 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t--g~skG---~aFVeF~~~e~A~~Al~~~~~i~Gr~I~ 76 (484)
..-+++|||++||++++|++|...|..||.|.--+-.+.... -.++| |+|+.|+++..+++.|..... ...++.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccceE
Confidence 345799999999999999999999999998654443222212 24567 999999999988887733332 222222
Q ss_pred ecccCC----CCcccccccC---CCcccCCCCCCccceEEecccccccchhHHHHHhh-hcCceeeEEEEeeCCCCCccc
Q 011518 77 AKKAVP----RDDQNIQNRN---NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD-QFGIITDVVVMYDHNTQRPRG 148 (484)
Q Consensus 77 V~~a~~----~~~~~~~~~~---~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~-~~G~I~~v~i~~d~~tg~~rG 148 (484)
++...+ +..+...... ..........++.++|||+.||..++.++|..+|+ -||.|+.+-|-.|++-+-+||
T Consensus 335 f~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred EEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 211111 1111111110 11112334557789999999999999999999998 799999999999988899999
Q ss_pred eeeeeeccHHHHHHHHHHHhhhhc----CeEEEEeecCCCCCCC
Q 011518 149 FGFITYDSEEAVDKVLLKTFHELN----GKMVEVKRAVPKELSP 188 (484)
Q Consensus 149 ~aFV~F~s~e~A~~Al~~~~~~l~----Gr~I~V~~a~~k~~~~ 188 (484)
-+-|+|++.++-.+||++-..+|+ .|+|+|+.-.-.+...
T Consensus 415 aGRVtFsnqqsYi~AIsarFvql~h~d~~KRVEIkPYv~eDq~C 458 (520)
T KOG0129|consen 415 AGRVTFSNQQAYIKAISARFVQLDHTDIDKRVEIKPYVMEDQLC 458 (520)
T ss_pred cceeeecccHHHHHHHhhheEEEeccccceeeeecceeccccch
Confidence 999999999999999998653333 4688887665444433
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=3.1e-15 Score=145.39 Aligned_cols=90 Identities=21% Similarity=0.407 Sum_probs=84.4
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
++-++|||.-|+++++|.+|++.|++||.|+.|.|+.|+.|++++|||||+|+++.++++|.+..+ ..|+++.|.|...
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 677999999999999999999999999999999999999999999999999999999999999888 8999999999998
Q ss_pred CCCCCCCCCCC
Q 011518 182 VPKELSPGPSR 192 (484)
Q Consensus 182 ~~k~~~~~~~r 192 (484)
..+..+...+|
T Consensus 179 RgRTvkgW~PR 189 (335)
T KOG0113|consen 179 RGRTVKGWLPR 189 (335)
T ss_pred ccccccccccc
Confidence 88887765554
No 47
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.54 E-value=7.5e-14 Score=143.79 Aligned_cols=176 Identities=19% Similarity=0.293 Sum_probs=131.5
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhh-heeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~-v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
...|-+++||+.|||+||.+||+.+-.|.. |.++.++ .+++.|-|||+|+++|+|++|| .+++.|..|.|+|.++..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 567999999999999999999999866655 3355554 6789999999999999999999 889999999999977632
Q ss_pred CCccccc------------------ccC----------------------------------C------------CcccC
Q 011518 83 RDDQNIQ------------------NRN----------------------------------N------------SSIHG 98 (484)
Q Consensus 83 ~~~~~~~------------------~~~----------------------------------~------------~~~~~ 98 (484)
.+..... .+. . .....
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 2211100 000 0 00000
Q ss_pred C--C-----------CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHH
Q 011518 99 S--P-----------GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (484)
Q Consensus 99 ~--~-----------~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~ 165 (484)
. + .......++.+.||+..++.||..+|...-.+ .|+|... .+++..|.|+|+|.+.++|..|+.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig-~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIG-PDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeC-CCCccCCcceeecccchhhHhhhc
Confidence 0 0 00112578889999999999999999987555 5555444 348899999999999999999999
Q ss_pred HHhhhhcCeEEEEeecCC
Q 011518 166 KTFHELNGKMVEVKRAVP 183 (484)
Q Consensus 166 ~~~~~l~Gr~I~V~~a~~ 183 (484)
+....+..+.|++.....
T Consensus 340 kd~anm~hrYVElFln~~ 357 (510)
T KOG4211|consen 340 KDGANMGHRYVELFLNGA 357 (510)
T ss_pred cCCcccCcceeeecccCC
Confidence 888889999998877533
No 48
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.7e-14 Score=152.32 Aligned_cols=175 Identities=18% Similarity=0.278 Sum_probs=130.5
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
++.++.|+|+|||..+..++|.+.|..||+|..+.+... +. -++|+|.++.+|.+|+ +.-..+...++.+.|
T Consensus 382 ~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 382 ERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 456789999999999999999999999999999855422 11 3899999999999999 666666666666665
Q ss_pred cCCCCcc-------cc-----c------cc---CCCcccC--C-----------CCCCccceEEecccccccchhHHHHH
Q 011518 80 AVPRDDQ-------NI-----Q------NR---NNSSIHG--S-----------PGPARTKKIFVGGLASTVTESDFKKY 125 (484)
Q Consensus 80 a~~~~~~-------~~-----~------~~---~~~~~~~--~-----------~~~~~~~~LfVgnLp~~~teedL~~~ 125 (484)
+...... .. . .+ ....... . ......++|||.||++++|.++|+.+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 5322111 00 0 00 0000000 0 00112234999999999999999999
Q ss_pred hhhcCceeeEEEEeeCCCC---CccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 126 FDQFGIITDVVVMYDHNTQ---RPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 126 F~~~G~I~~v~i~~d~~tg---~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
|.+.|.|..|.|...++.. -+.||+||+|.++++|++|++.|+ +.|+|+.|.|+++.
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 9999999999887654321 245999999999999999999999 99999999999987
No 49
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.51 E-value=1.9e-14 Score=143.63 Aligned_cols=181 Identities=20% Similarity=0.280 Sum_probs=138.6
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhh----hhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeec
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGE----VLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~----V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~ 78 (484)
+.-.|-+++||.++|+.||.+||.+--+ ++.|..++. .+++..|-|||.|..+++|+.|| +++..|.-|.|++.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3556788999999999999999964222 334444444 47899999999999999999999 88888888999998
Q ss_pred ccCCCCcccccccCCCcc---------------cCCCCCCccceEEecccccccchhHHHHHhhhcCc-eee--EEEEee
Q 011518 79 KAVPRDDQNIQNRNNSSI---------------HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI-ITD--VVVMYD 140 (484)
Q Consensus 79 ~a~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~-I~~--v~i~~d 140 (484)
++...+.++...+..... .-.+......+|.+++||++.+.|||-++|..|-. |.. |.++.+
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N 318 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN 318 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc
Confidence 876655544433322110 01112233678999999999999999999998865 333 666666
Q ss_pred CCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCC
Q 011518 141 HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 141 ~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~ 186 (484)
. .+++.|.|||+|.++|+|.+|..+.+ +..+.|.|+|..+...+.
T Consensus 319 ~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 319 G-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred C-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 4 48999999999999999999999988 555699999988766554
No 50
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.51 E-value=1.8e-14 Score=156.01 Aligned_cols=119 Identities=15% Similarity=0.240 Sum_probs=96.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhh--hhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAF--GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~--G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.++|||+|||+++|||+|+++|++| |+|++|++++ +||||+|+++++|++|| ++...|+++.|+|.++
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999 9999988764 49999999999999999 8899999999999999
Q ss_pred CCCCcccccc------------cCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCc
Q 011518 81 VPRDDQNIQN------------RNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI 131 (484)
Q Consensus 81 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~ 131 (484)
++........ ................++++.||++.++++-|+++|..++.
T Consensus 305 kp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~ 367 (578)
T TIGR01648 305 KPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGP 367 (578)
T ss_pred cCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCcc
Confidence 8765432110 00011112223345789999999999999999999999875
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.51 E-value=1.3e-13 Score=136.62 Aligned_cols=174 Identities=12% Similarity=0.294 Sum_probs=131.7
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhh--------heeecccccccccceeEEEEeChhhHHHhh--hhccccccce
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRT 74 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~--------v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~ 74 (484)
++.|||.|||.++|.+|+.++|++||.|.. |+|.++. .|..||=|+|.|...++++.|+ ++...+.+++
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 445999999999999999999999998764 6777775 5899999999999999999999 8889999999
Q ss_pred eeecccCCCCcccc---cc--------------cCC-----CcccCCCCCCccceEEeccccc----cc-------chhH
Q 011518 75 VEAKKAVPRDDQNI---QN--------------RNN-----SSIHGSPGPARTKKIFVGGLAS----TV-------TESD 121 (484)
Q Consensus 75 I~V~~a~~~~~~~~---~~--------------~~~-----~~~~~~~~~~~~~~LfVgnLp~----~~-------teed 121 (484)
|+|.+|.-...-.. .. ++. ............++|.|.||=. .. -++|
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99998843211000 00 000 0000111223457888888721 11 2477
Q ss_pred HHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 122 L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
|++.+++||.|.+|+|... .|.|.+.|.|.+.++|+.||+.|+ ..|.||+|+...-.-
T Consensus 293 l~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 8888999999999887633 467899999999999999999999 899999998876543
No 52
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.7e-14 Score=121.79 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=78.1
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
...++|||+||...++||+|.++|+++|+|.+|.+-.|+.+..++|||||+|.+.++|+.|+...+ +.|+.++|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 346899999999999999999999999999999999999999999999999999999999999988 8999999999997
Q ss_pred CCCCC
Q 011518 182 VPKEL 186 (484)
Q Consensus 182 ~~k~~ 186 (484)
.--..
T Consensus 114 ~GF~e 118 (153)
T KOG0121|consen 114 AGFVE 118 (153)
T ss_pred ccchh
Confidence 55443
No 53
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=8.4e-14 Score=136.95 Aligned_cols=85 Identities=21% Similarity=0.523 Sum_probs=77.2
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.....++|+|.|||+...|.||+.+|++||+|.+|+|+.+. .-+|||+||+|++.+||++|.++++ ..+.||+|+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44566899999999999999999999999999999999873 5689999999999999999999999 89999999999
Q ss_pred ecCCCCCC
Q 011518 180 RAVPKELS 187 (484)
Q Consensus 180 ~a~~k~~~ 187 (484)
.|.++-..
T Consensus 170 ~ATarV~n 177 (376)
T KOG0125|consen 170 NATARVHN 177 (376)
T ss_pred ccchhhcc
Confidence 98876443
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.49 E-value=8e-14 Score=108.90 Aligned_cols=69 Identities=32% Similarity=0.732 Sum_probs=65.1
Q ss_pred EEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 108 IFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
|||+|||.++|+++|+++|++||.|..+.++.+ .+++.+++|||+|+++++|++|++.++ +.+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 668899999999999999999999888 899999885
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.48 E-value=5.1e-14 Score=110.03 Aligned_cols=68 Identities=29% Similarity=0.752 Sum_probs=63.9
Q ss_pred eEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 8 LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
|||+|||+++|+++|+++|++||+|+.++|+.+ .+++.+++|||+|.++++|++|+ ++...+.+++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 899999999999999999999999999999998 57889999999999999999999 888888888874
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1e-13 Score=131.60 Aligned_cols=81 Identities=23% Similarity=0.444 Sum_probs=77.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.|+.+|-|.|||.+++|++|++||.+||.|..|.|.+|+.||.+||||||.|.+.++|++|| ++.+-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 36788999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 57
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.43 E-value=8.6e-13 Score=123.78 Aligned_cols=165 Identities=14% Similarity=0.283 Sum_probs=114.1
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecc-cccccccceeEEEEeChhhHHHhh--hhccccc---cceeeec
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKD-RATGRARGFGFIVFADPAVAERVV--MQKHMID---GRTVEAK 78 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d-~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~---Gr~I~V~ 78 (484)
-|+|||.+||.|+.-.||..+|..|--.+.+.|... +....++-+|||.|.+.++|++|+ ++...|+ +..|.++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 799999999999999999999999866676666543 333456789999999999999999 7777776 3556666
Q ss_pred ccCCCCcccccccCC---------------Ccc----------------------cC-----------------------
Q 011518 79 KAVPRDDQNIQNRNN---------------SSI----------------------HG----------------------- 98 (484)
Q Consensus 79 ~a~~~~~~~~~~~~~---------------~~~----------------------~~----------------------- 98 (484)
.++...+........ ... ..
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 554322111000000 000 00
Q ss_pred ----------CCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 99 ----------SPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 99 ----------~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
......+.+|||.||..+|+|++||++|+.|--...++|... + ....|||+|++.+.|..|+.
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~---~-g~~vaf~~~~~~~~at~am~--- 266 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR---G-GMPVAFADFEEIEQATDAMN--- 266 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC---C-CcceEeecHHHHHHHHHHHH---
Confidence 000112358999999999999999999999987766666422 2 23378999988888888874
Q ss_pred hhhcCeEEE
Q 011518 169 HELNGKMVE 177 (484)
Q Consensus 169 ~~l~Gr~I~ 177 (484)
.|+|..|.
T Consensus 267 -~lqg~~~s 274 (284)
T KOG1457|consen 267 -HLQGNLLS 274 (284)
T ss_pred -Hhhcceec
Confidence 45555554
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=3e-13 Score=128.50 Aligned_cols=82 Identities=23% Similarity=0.438 Sum_probs=78.3
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+..+|.|.||+.+++|+||+++|.+||.|.+|.|.+|++|+.+||||||+|+++++|.+||+.++ +-++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 456789999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred CCC
Q 011518 182 VPK 184 (484)
Q Consensus 182 ~~k 184 (484)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.43 E-value=3.4e-13 Score=106.21 Aligned_cols=69 Identities=26% Similarity=0.647 Sum_probs=64.1
Q ss_pred EEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 108 IFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
|||+|||++++++||+++|+.++.|.++.+..+++ ++++++|||+|.++++|++|++.++ +.|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999977 8999999999999999999999999 899999985
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=5.5e-13 Score=140.49 Aligned_cols=179 Identities=18% Similarity=0.363 Sum_probs=137.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|||++||..+++++++|++..||++....+++|..++-+|+|||.+|.++.....|+ ++.+.+.++++.|..|.
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 4678999999999999999999999999999999999988999999999999999999999 89999999999998887
Q ss_pred CCCcccccccCCCc--cc------CCCCCCccceEEeccc--cccc-ch-------hHHHHHhhhcCceeeEEEEee---
Q 011518 82 PRDDQNIQNRNNSS--IH------GSPGPARTKKIFVGGL--ASTV-TE-------SDFKKYFDQFGIITDVVVMYD--- 140 (484)
Q Consensus 82 ~~~~~~~~~~~~~~--~~------~~~~~~~~~~LfVgnL--p~~~-te-------edL~~~F~~~G~I~~v~i~~d--- 140 (484)
..........+... .. ......+++.|.+.|+ |.++ .+ |+|+..+.+|+.|..|.|.++
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 65443332222000 00 0112233444444443 1111 11 566677778999999999887
Q ss_pred CCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 141 HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 141 ~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
.+-.-..|..||+|.+.+++++|++.|. .+|.+|.|...+-.
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 2233457789999999999999999998 89999999887753
No 61
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.41 E-value=2.7e-13 Score=132.20 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=72.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
+..++|||+|||+++||++|++||+.||+|++|.|++++. .++||||+|+++++|++|| +++..|.++.|.|.++.
T Consensus 2 ~~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 2 MQVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 4578999999999999999999999999999999998863 5789999999999999999 99999999999999986
Q ss_pred CCC
Q 011518 82 PRD 84 (484)
Q Consensus 82 ~~~ 84 (484)
...
T Consensus 79 ~~~ 81 (260)
T PLN03120 79 DYQ 81 (260)
T ss_pred CCC
Confidence 543
No 62
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.39 E-value=2.6e-13 Score=106.84 Aligned_cols=68 Identities=32% Similarity=0.701 Sum_probs=61.3
Q ss_pred eEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceee
Q 011518 8 LFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVE 76 (484)
Q Consensus 8 LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~ 76 (484)
|||+|||+++|+++|+++|+.+|.|..+.+++++. ++.+++|||+|.++++|++|+ .+++.++++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999976 899999999999999999999 555889998874
No 63
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.38 E-value=3.4e-12 Score=128.75 Aligned_cols=170 Identities=16% Similarity=0.250 Sum_probs=130.4
Q ss_pred ccceEEeeeccC-CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 5 LGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 5 ~r~LfVgnLP~~-~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
...|.|.||-++ +|.+.|..+|.-||+|.+|+|+.++. --|+|++.|...|+-|+ ++++.|.+++|+|..++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 478889998875 79999999999999999999999763 36999999999999999 99999999999998876
Q ss_pred CCCcccccccCCC----------cccCCC---------CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCC
Q 011518 82 PRDDQNIQNRNNS----------SIHGSP---------GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHN 142 (484)
Q Consensus 82 ~~~~~~~~~~~~~----------~~~~~~---------~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~ 142 (484)
....+..++..++ ..+.-. --+++.+|++.|+|.+++||||+++|...|-+++......+
T Consensus 372 H~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~k- 450 (492)
T KOG1190|consen 372 HTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQK- 450 (492)
T ss_pred CccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCC-
Confidence 5543332221111 000000 11456799999999999999999999988876554443322
Q ss_pred CCCccceeeeeeccHHHHHHHHHHHh-hhhcCe-EEEEeecCC
Q 011518 143 TQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVEVKRAVP 183 (484)
Q Consensus 143 tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~I~V~~a~~ 183 (484)
.+-+|++.+++.|+|..|+..++ +.+... .|+|++.+.
T Consensus 451 ---d~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 451 ---DRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred ---CcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 23389999999999988888776 777654 899988753
No 64
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.38 E-value=4.6e-13 Score=124.28 Aligned_cols=83 Identities=22% Similarity=0.406 Sum_probs=78.1
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.......|.|.||.+.++.++|+.+|++||.|.+|.|+.|+.|.+++|||||.|.+..+|+.|++.|+ ..|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34566889999999999999999999999999999999999999999999999999999999999999 89999999998
Q ss_pred ecCC
Q 011518 180 RAVP 183 (484)
Q Consensus 180 ~a~~ 183 (484)
+|+=
T Consensus 89 ~ary 92 (256)
T KOG4207|consen 89 MARY 92 (256)
T ss_pred hhhc
Confidence 8754
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=1.2e-12 Score=127.54 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=70.6
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k 184 (484)
.++|||+|||+.+||+||+++|+.||+|++|.|+.|+. .++||||+|+++++|+.||.+.+..|.+++|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 57999999999999999999999999999999998864 578999999999999999975559999999999998644
Q ss_pred C
Q 011518 185 E 185 (484)
Q Consensus 185 ~ 185 (484)
+
T Consensus 81 ~ 81 (260)
T PLN03120 81 Q 81 (260)
T ss_pred C
Confidence 3
No 66
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.6e-12 Score=126.00 Aligned_cols=177 Identities=14% Similarity=0.305 Sum_probs=132.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
...+|||.-+..|.+|+||+..|+.||+|+.|.+.+++.....|||+||||.+.+.-..|+ ++...+.++.|+|-++.
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4578999999999999999999999999999999999988899999999999999999999 88888899999987764
Q ss_pred CCCcccccccC--------------------------------------------------------------CC----c
Q 011518 82 PRDDQNIQNRN--------------------------------------------------------------NS----S 95 (484)
Q Consensus 82 ~~~~~~~~~~~--------------------------------------------------------------~~----~ 95 (484)
.....-..... .. .
T Consensus 289 TPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~v 368 (544)
T KOG0124|consen 289 TPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGV 368 (544)
T ss_pred CCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCCCCCccccchhccCCceeccC
Confidence 43210000000 00 0
Q ss_pred cc-------------------C-------------------------------------------------CCCCCccce
Q 011518 96 IH-------------------G-------------------------------------------------SPGPARTKK 107 (484)
Q Consensus 96 ~~-------------------~-------------------------------------------------~~~~~~~~~ 107 (484)
.. . -..+.+.+.
T Consensus 369 tP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~V 448 (544)
T KOG0124|consen 369 TPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTV 448 (544)
T ss_pred CCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcE
Confidence 00 0 000122345
Q ss_pred EEeccc--ccccc---hhHHHHHhhhcCceeeEEEEeeCCCCCc----cceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 108 IFVGGL--ASTVT---ESDFKKYFDQFGIITDVVVMYDHNTQRP----RGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 108 LfVgnL--p~~~t---eedL~~~F~~~G~I~~v~i~~d~~tg~~----rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
|.++|. |.+++ |.+|++.+.+||.|.+|.|...+.+... -=--||+|....++.+|++.++ ..|.||++.
T Consensus 449 ivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~Vv 528 (544)
T KOG0124|consen 449 IVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVV 528 (544)
T ss_pred EEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceecCceee
Confidence 666776 44444 4688899999999999999877654421 1137999999999999999999 889999887
Q ss_pred Eee
Q 011518 178 VKR 180 (484)
Q Consensus 178 V~~ 180 (484)
.+.
T Consensus 529 AE~ 531 (544)
T KOG0124|consen 529 AEV 531 (544)
T ss_pred hhh
Confidence 654
No 67
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5.6e-12 Score=128.51 Aligned_cols=120 Identities=22% Similarity=0.374 Sum_probs=92.2
Q ss_pred eChhhHHHhhhhccccccceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceee
Q 011518 55 ADPAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITD 134 (484)
Q Consensus 55 ~~~e~A~~Al~~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~ 134 (484)
.+.|+|.++|+. -.+..|+|+....+..-.. .....+.+...+.|||+.||.++.|+||.-+|++.|+|-+
T Consensus 42 ~~~eaal~al~E---~tgy~l~ve~gqrk~ggPp------P~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~e 112 (506)
T KOG0117|consen 42 QSEEAALKALLE---RTGYTLVVENGQRKYGGPP------PGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYE 112 (506)
T ss_pred ccHHHHHHHHHH---hcCceEEEeccccccCCCC------CcccCCCCCCCceEEecCCCccccchhhHHHHHhccceee
Confidence 345667666633 2356676665443322111 1122334577899999999999999999999999999999
Q ss_pred EEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh-cCeEEEEeecCC
Q 011518 135 VVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL-NGKMVEVKRAVP 183 (484)
Q Consensus 135 v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l-~Gr~I~V~~a~~ 183 (484)
++||+|+.++.+||||||+|.+.++|++||+.++ ++| .||.|.|..+..
T Consensus 113 lRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 113 LRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred EEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 9999999999999999999999999999999988 766 578887766443
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.3e-12 Score=113.00 Aligned_cols=80 Identities=19% Similarity=0.373 Sum_probs=75.2
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+++++|||+||+.-++||+|-++|+++|+|..|.+=.|+.+.++=|||||+|.+.++|+.|| ++...++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999999999999999999999999999999999 8899999999999886
Q ss_pred CC
Q 011518 81 VP 82 (484)
Q Consensus 81 ~~ 82 (484)
.-
T Consensus 114 ~G 115 (153)
T KOG0121|consen 114 AG 115 (153)
T ss_pred cc
Confidence 43
No 69
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=9.8e-13 Score=119.41 Aligned_cols=75 Identities=23% Similarity=0.452 Sum_probs=69.1
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||+||+.++++.||+.+|..||+|..|+|.+.+ .|||||||+++.+|++|+ |+...|++..|.|+.+.-
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 6899999999999999999999999999999998864 689999999999999999 999999999999987765
Q ss_pred CC
Q 011518 83 RD 84 (484)
Q Consensus 83 ~~ 84 (484)
+.
T Consensus 85 ~~ 86 (195)
T KOG0107|consen 85 RP 86 (195)
T ss_pred Cc
Confidence 43
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.34 E-value=5e-13 Score=137.15 Aligned_cols=77 Identities=21% Similarity=0.357 Sum_probs=70.2
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeCh--hhHHHhh--hhccccccceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP--AVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~--e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
...+|||+||++++|++||+++|.+||.|.+|.|++ .++ ||||||+|.+. +++++|| +++..|+|+.|+|.+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 356899999999999999999999999999999994 466 89999999987 6789999 999999999999999
Q ss_pred cCCCC
Q 011518 80 AVPRD 84 (484)
Q Consensus 80 a~~~~ 84 (484)
|++.-
T Consensus 85 AKP~Y 89 (759)
T PLN03213 85 AKEHY 89 (759)
T ss_pred ccHHH
Confidence 98754
No 71
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=1.9e-12 Score=124.38 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecc
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~ 79 (484)
|..+-.+|||+||++++||++|++||+.||+|++|+|++|. +.++||||+|+++++|+.|| ++...|.++.|.|..
T Consensus 1 m~~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~ 77 (243)
T PLN03121 1 MYPGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITR 77 (243)
T ss_pred CCCCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEe
Confidence 66777899999999999999999999999999999999985 45579999999999999999 999999999999987
Q ss_pred cCCC
Q 011518 80 AVPR 83 (484)
Q Consensus 80 a~~~ 83 (484)
+...
T Consensus 78 ~~~y 81 (243)
T PLN03121 78 WGQY 81 (243)
T ss_pred Cccc
Confidence 6543
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=2.5e-12 Score=116.75 Aligned_cols=76 Identities=21% Similarity=0.502 Sum_probs=69.9
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+||+..+++.||+.+|.+||.|..|.|.+. +.|||||||+++.+|+.|+..|+ ++|+|..|.|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999999754 67899999999999999999999 99999999999876
Q ss_pred CC
Q 011518 183 PK 184 (484)
Q Consensus 183 ~k 184 (484)
-+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 73
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.32 E-value=4.8e-12 Score=122.22 Aligned_cols=79 Identities=35% Similarity=0.698 Sum_probs=76.0
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
.++|||+|||..+++++|+++|.+||.|..|.|+.|+.+++++|+|||+|.++++|+.|++.++ ..|.+++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999999999 899999999999653
No 74
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.5e-12 Score=121.86 Aligned_cols=89 Identities=31% Similarity=0.583 Sum_probs=83.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
.+.++|||++|..+|+|.-|...|-+||.|++|.|+.|.++++.|+|+||+|+..|+|.+||..|+ .+|.||.|+|.+|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 456899999999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCCCCCC
Q 011518 182 VPKELSPGPS 191 (484)
Q Consensus 182 ~~k~~~~~~~ 191 (484)
+|.+.+....
T Consensus 88 kP~kikegsq 97 (298)
T KOG0111|consen 88 KPEKIKEGSQ 97 (298)
T ss_pred CCccccCCCC
Confidence 9987765444
No 75
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=7.2e-12 Score=96.68 Aligned_cols=71 Identities=35% Similarity=0.662 Sum_probs=65.9
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
+|+|.|||..+++++|+++|++||.|.++.++.++ +.++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 6788999999999999999999988 88999999874
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.28 E-value=8.2e-12 Score=95.91 Aligned_cols=70 Identities=37% Similarity=0.698 Sum_probs=65.4
Q ss_pred ecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 110 VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 110 VgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
|.|||..+++++|+++|++||.|.++.|..++.+.+++++|||+|.+.++|++|++.++ ..+.+++|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788999999999999999999999988 78899999874
No 77
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=5.1e-12 Score=123.17 Aligned_cols=80 Identities=24% Similarity=0.498 Sum_probs=74.1
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
+.--+||||.-|+.+++|.+|++.|+.||+|+.|.|++|+.|+++||||||+|+++.+..+|. .+.++|+++.|.|..
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 344689999999999999999999999999999999999999999999999999999999998 778999999998876
Q ss_pred cC
Q 011518 80 AV 81 (484)
Q Consensus 80 a~ 81 (484)
-.
T Consensus 178 ER 179 (335)
T KOG0113|consen 178 ER 179 (335)
T ss_pred cc
Confidence 43
No 78
>smart00362 RRM_2 RNA recognition motif.
Probab=99.27 E-value=7e-12 Score=96.73 Aligned_cols=70 Identities=30% Similarity=0.657 Sum_probs=63.6
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
+|||.|||.++++++|+++|++||+|..+.++.++ +.++++|||+|.++++|++|+ ++...+.+++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 69999999999999999999999999999999876 678899999999999999999 66678888888763
No 79
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.26 E-value=1.4e-11 Score=123.34 Aligned_cols=178 Identities=19% Similarity=0.275 Sum_probs=130.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.++..|-.++|||..++++|..||.-.-.+.-...+.....++..+++.|.|.|+|.-+-|+ .+++.+..|.|+|-++.
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKAT 137 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccC
Confidence 45667788999999999999999987654444445554456777899999999999999898 88889999999999887
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCc----eeeEEEEeeCCCCCccceeeeeeccH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI----ITDVVVMYDHNTQRPRGFGFITYDSE 157 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~----I~~v~i~~d~~tg~~rG~aFV~F~s~ 157 (484)
..+-.....-.......-......-.|.+++||+++++.|+.++|-+.-. ++.|.+++. ..+++.|-|||.|..+
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACE 216 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCH
Confidence 76543332211111111111122345677899999999999999964322 344444443 3589999999999999
Q ss_pred HHHHHHHHHHhhhhcCeEEEEeec
Q 011518 158 EAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 158 e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
++|+.||.++...|.-|.|++.++
T Consensus 217 e~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 999999998877777777766543
No 80
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.26 E-value=6.3e-12 Score=126.84 Aligned_cols=170 Identities=14% Similarity=0.279 Sum_probs=121.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh----hhccccccceeee
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEA 77 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al----~~~~~i~Gr~I~V 77 (484)
...++.|.++||||+++|+||.+++.+||+|+.+.+++-+. -|||||+|+++|...+ .-...+.+++|.|
T Consensus 25 ~~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yi 98 (492)
T KOG1190|consen 25 AEPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYI 98 (492)
T ss_pred cCCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceee
Confidence 34678999999999999999999999999999999888653 6999999999998855 3344566777777
Q ss_pred cccCCCCccccccc---------------------CCC-cc--cCCCCCCccceEEecccccccchhHHHHHhhhcCcee
Q 011518 78 KKAVPRDDQNIQNR---------------------NNS-SI--HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIIT 133 (484)
Q Consensus 78 ~~a~~~~~~~~~~~---------------------~~~-~~--~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~ 133 (484)
.++..+........ ... .. -..+.+...-+++|.++-+.++-|-|.++|++||.|.
T Consensus 99 q~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~Vl 178 (492)
T KOG1190|consen 99 QYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVL 178 (492)
T ss_pred hhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeE
Confidence 66543221111000 000 00 0112333456788999999999999999999999998
Q ss_pred eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hh-hcC-eEEEEeec
Q 011518 134 DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE-LNG-KMVEVKRA 181 (484)
Q Consensus 134 ~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~-l~G-r~I~V~~a 181 (484)
+|.-....+ +- -|+|.|.+.+.|+.|...++ .. .+| +.|+|.+.
T Consensus 179 KIiTF~Knn-~F---QALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 179 KIITFTKNN-GF---QALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEEeccc-ch---hhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 876554322 11 39999999999999997776 43 333 34555444
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=9.9e-12 Score=127.74 Aligned_cols=78 Identities=21% Similarity=0.417 Sum_probs=71.5
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccH--HHHHHHHHHHh-hhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE--EAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~--e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
....+|||+||++.++++||+++|.+||.|.+|.|+ ++++ ||||||+|.+. +++++||+.++ .+|+|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 456799999999999999999999999999999999 4456 89999999987 78999999999 89999999999
Q ss_pred ecCCC
Q 011518 180 RAVPK 184 (484)
Q Consensus 180 ~a~~k 184 (484)
.|+|.
T Consensus 84 KAKP~ 88 (759)
T PLN03213 84 KAKEH 88 (759)
T ss_pred eccHH
Confidence 99885
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=2.7e-11 Score=123.03 Aligned_cols=81 Identities=25% Similarity=0.441 Sum_probs=74.2
Q ss_pred CccceEEecccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
.+.+.+||.|||+++.|+|||++| ++-|+|+.|.++.|. .+++||+|.|||+++|.+++|+|+++ ++++||+|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 455679999999999999999999 578999999999995 59999999999999999999999999 899999999998
Q ss_pred cCCC
Q 011518 181 AVPK 184 (484)
Q Consensus 181 a~~k 184 (484)
....
T Consensus 121 d~d~ 124 (608)
T KOG4212|consen 121 DHDE 124 (608)
T ss_pred cCch
Confidence 7553
No 83
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.25 E-value=1.5e-11 Score=112.50 Aligned_cols=80 Identities=26% Similarity=0.446 Sum_probs=76.9
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
....+|||+||+..++++.|.++|-+.|+|+++.|++|+.++..+|||||+|.++|+|+-|++.++ ..|-||+|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 456799999999999999999999999999999999999999999999999999999999999999 8999999999998
Q ss_pred C
Q 011518 182 V 182 (484)
Q Consensus 182 ~ 182 (484)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 84
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.24 E-value=7e-12 Score=116.53 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=75.2
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
....|.|-||..-++.++|+.+|++||.|-+|.|.+|+.|..++|||||.|.++.+|++|+ ++..+++++.|.|+.|.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 4678999999999999999999999999999999999999999999999999999999999 99999999999998875
Q ss_pred C
Q 011518 82 P 82 (484)
Q Consensus 82 ~ 82 (484)
-
T Consensus 92 y 92 (256)
T KOG4207|consen 92 Y 92 (256)
T ss_pred c
Confidence 4
No 85
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=130.51 Aligned_cols=182 Identities=22% Similarity=0.398 Sum_probs=143.2
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhh-----------h-hhhhheeecccccccccceeEEEEeChhhHHHhh-hhc
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAF-----------G-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQK 67 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~-----------G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~ 67 (484)
|..+.+.++|.+||..++|+.+..+|..- | +|+.+.| ...+.||||+|.+.++|..|+ ++.
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~~~~~ 244 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAMALDG 244 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhhcccc
Confidence 34678899999999999999999999863 1 1333333 234579999999999999999 888
Q ss_pred cccccceeeecccCCCCcccccccC-------CCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEee
Q 011518 68 HMIDGRTVEAKKAVPRDDQNIQNRN-------NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD 140 (484)
Q Consensus 68 ~~i~Gr~I~V~~a~~~~~~~~~~~~-------~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d 140 (484)
..+.++++.+............... ..............++||++||..+++.+++++.+.||.+....++.|
T Consensus 245 ~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d 324 (500)
T KOG0120|consen 245 IIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKD 324 (500)
T ss_pred hhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecc
Confidence 8889999888765443322211110 111112223456689999999999999999999999999999999999
Q ss_pred CCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCCCCCC
Q 011518 141 HNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPKELSP 188 (484)
Q Consensus 141 ~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k~~~~ 188 (484)
..++-+|+|||.+|.+....+.|++.++ ..+.+++|.|..|.+.....
T Consensus 325 ~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~ 373 (500)
T KOG0120|consen 325 SATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNA 373 (500)
T ss_pred cccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhc
Confidence 9999999999999999999999999999 89999999999987755433
No 86
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.23 E-value=2.4e-11 Score=116.95 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=70.2
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~ 183 (484)
...+|||+||++.+||+||+++|+.||+|++|+|++|. +.+++|||+|+++++|+.|+.+....|.+++|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 45789999999999999999999999999999999984 445799999999999999997777999999999988654
Q ss_pred C
Q 011518 184 K 184 (484)
Q Consensus 184 k 184 (484)
.
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 87
>smart00360 RRM RNA recognition motif.
Probab=99.23 E-value=1.1e-11 Score=95.11 Aligned_cols=69 Identities=30% Similarity=0.700 Sum_probs=63.0
Q ss_pred EeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 10 IGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 10 VgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
|.|||+++++++|+++|++||+|.++.|..++.+++++++|||+|.+.++|++|+ +++..+.++.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999998878899999999999999999999 66677888888763
No 88
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.23 E-value=8.1e-12 Score=123.13 Aligned_cols=80 Identities=29% Similarity=0.607 Sum_probs=73.5
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..++|+|.|||...-|.||+..|++||+|++|.|+.+. .-+|||+||+|+++++|++|- ++...+.||+|||..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 36899999999999999999999999999999999863 358999999999999999999 89999999999999998
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
.+..
T Consensus 173 arV~ 176 (376)
T KOG0125|consen 173 ARVH 176 (376)
T ss_pred hhhc
Confidence 7743
No 89
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.22 E-value=4.6e-11 Score=92.62 Aligned_cols=73 Identities=34% Similarity=0.686 Sum_probs=67.1
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
+|+|.+||..+++++|+++|+.++.|..+.+..++.+ +++++|||+|.+.++|+.|++.++ ..+++++|+|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988765 778999999999999999999998 669999999864
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=1.4e-12 Score=118.89 Aligned_cols=81 Identities=23% Similarity=0.552 Sum_probs=75.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.|+--|||++||.+.||.||.-.|++||+|++|.+++|+.||+++||||+.|++..+...|+ ++...|.+|.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 46778999999999999999999999999999999999999999999999999999999999 9999999999999865
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
...
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 443
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=2.6e-11 Score=105.81 Aligned_cols=84 Identities=24% Similarity=0.369 Sum_probs=78.4
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..-.|||.+++..+||+||.+.|..||+|+.|.+-.|+.|+-.||||+|+|++.++|++|++.+| .+|.+..|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 34679999999999999999999999999999999999999999999999999999999999999 99999999999986
Q ss_pred CCCCC
Q 011518 183 PKELS 187 (484)
Q Consensus 183 ~k~~~ 187 (484)
.+...
T Consensus 151 v~gp~ 155 (170)
T KOG0130|consen 151 VKGPE 155 (170)
T ss_pred ecCCc
Confidence 65543
No 92
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.8e-11 Score=110.80 Aligned_cols=78 Identities=17% Similarity=0.422 Sum_probs=69.7
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..++|||+|||.++.+.||+++|.+||.|++|.+... ..+..||||+|+++.+|+.||...+ ..+++.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4578999999999999999999999999999988644 3466799999999999999999887 89999999999985
Q ss_pred CC
Q 011518 183 PK 184 (484)
Q Consensus 183 ~k 184 (484)
.-
T Consensus 82 gg 83 (241)
T KOG0105|consen 82 GG 83 (241)
T ss_pred CC
Confidence 54
No 93
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-11 Score=116.02 Aligned_cols=86 Identities=28% Similarity=0.507 Sum_probs=80.9
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
|..+.|+|||++|..++||.-|...|-+||.|++|.|..|-.+.+.|+|+||+|...|+|.+|| ++..++.+|.|+|.
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred ccCCCCcc
Q 011518 79 KAVPRDDQ 86 (484)
Q Consensus 79 ~a~~~~~~ 86 (484)
.|+|.+..
T Consensus 86 ~AkP~kik 93 (298)
T KOG0111|consen 86 LAKPEKIK 93 (298)
T ss_pred ecCCcccc
Confidence 99886543
No 94
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.18 E-value=2.3e-11 Score=127.47 Aligned_cols=80 Identities=33% Similarity=0.652 Sum_probs=76.6
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
+.|||+|||.+++||+|.++|+..|.|..++++.|+.|++.|||+|++|.++++|++|+ ++..++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999 8899999999999998765
Q ss_pred Cc
Q 011518 84 DD 85 (484)
Q Consensus 84 ~~ 85 (484)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 54
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=9.9e-11 Score=97.85 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=72.7
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
++..++.|||+|||+.+|.|++.++|.+||.|.+|+|-.+++| +|.|||.|++..+|++|++.+. ..++++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 4456789999999999999999999999999999999877654 7899999999999999999998 89999999997
Q ss_pred ecCCC
Q 011518 180 RAVPK 184 (484)
Q Consensus 180 ~a~~k 184 (484)
.-.+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76554
No 96
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=5.8e-12 Score=114.99 Aligned_cols=79 Identities=25% Similarity=0.506 Sum_probs=74.0
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
...-|||++||+++||-||-.+|++||+|++|.+++|+.|++++||||+.|++..+...|+.-++ ..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 34579999999999999999999999999999999999999999999999999999999999888 89999999998753
No 97
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.15 E-value=7.2e-11 Score=91.51 Aligned_cols=71 Identities=32% Similarity=0.690 Sum_probs=64.1
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
+|+|.+||+++++++|+++|+.+|+|..+.+..++.+ +.+++|||+|.++++|+.|+ ++...+.++.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 5899999999999999999999999999999988654 77899999999999999999 66666888888775
No 98
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=3.2e-11 Score=105.20 Aligned_cols=79 Identities=19% Similarity=0.424 Sum_probs=75.1
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCCCC
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPRD 84 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~~ 84 (484)
.|||.++..++||++|.+.|..||+|+.|.+-.|+.|+..||||+|+|++.++|++|+ ++...|.+++|.|.|+..+.
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 5899999999999999999999999999999999999999999999999999999999 88899999999999987654
Q ss_pred c
Q 011518 85 D 85 (484)
Q Consensus 85 ~ 85 (484)
+
T Consensus 154 p 154 (170)
T KOG0130|consen 154 P 154 (170)
T ss_pred C
Confidence 4
No 99
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.12 E-value=3.7e-11 Score=121.06 Aligned_cols=89 Identities=47% Similarity=0.772 Sum_probs=82.9
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVP 183 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~ 183 (484)
..++|||++|+|+++||.|++.|.+||+|.+|.|++|+.++++|+|+||+|++++.+.++|....+.|+++.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 56899999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCCCCCC
Q 011518 184 KELSPGPSR 192 (484)
Q Consensus 184 k~~~~~~~r 192 (484)
++......+
T Consensus 85 r~~~~~~~~ 93 (311)
T KOG4205|consen 85 REDQTKVGR 93 (311)
T ss_pred ccccccccc
Confidence 886654443
No 100
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.2e-11 Score=134.63 Aligned_cols=152 Identities=19% Similarity=0.288 Sum_probs=127.8
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
++..++||.||+..+.+++|.+.|..++.++.+.|...+.+++.||.|+|+|.+++++.+|| .....+.+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g--------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG--------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh---------
Confidence 46778999999999999999999999888777776655567899999999999999999999 33222222
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
..+|+|.|+|+..|.++|+.+|.++|.++.+.++..+. ++++|.|+|.|.++.++.
T Consensus 736 -----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 736 -----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADAS 791 (881)
T ss_pred -----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhh
Confidence 25699999999999999999999999999998777654 899999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCCCCCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVPKELS 187 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~k~~~ 187 (484)
+++.... ..++-+.++|....|...+
T Consensus 792 ~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 792 RKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred hhcccchhhhhhhcCccccccCCcccc
Confidence 9998877 6777777888776664433
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.09 E-value=1.2e-10 Score=122.28 Aligned_cols=81 Identities=26% Similarity=0.541 Sum_probs=77.5
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
+.|||+|||++++||+|.++|+..|.|..++++.|++|+++|||+||+|.+++++++|++.++ .++.+|+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 889999999999999999999999999999999999999999999999999999999999999 9999999999998655
Q ss_pred CC
Q 011518 185 EL 186 (484)
Q Consensus 185 ~~ 186 (484)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 102
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.09 E-value=3.6e-10 Score=117.96 Aligned_cols=81 Identities=23% Similarity=0.404 Sum_probs=70.2
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKE 185 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k~ 185 (484)
.+|||+|||.++++++|+++|.+||.|++..|......++..+|+||+|++.++++.||+.....|.+++|.|+..++..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~~ 368 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPGF 368 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccccc
Confidence 45999999999999999999999999999888765422344489999999999999999998889999999999887654
Q ss_pred C
Q 011518 186 L 186 (484)
Q Consensus 186 ~ 186 (484)
.
T Consensus 369 ~ 369 (419)
T KOG0116|consen 369 R 369 (419)
T ss_pred c
Confidence 3
No 103
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.07 E-value=1.5e-10 Score=116.06 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=141.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhc-cccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQK-HMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~-~~i~Gr~I~V~~a~ 81 (484)
..+++|++++.+++.+.++..++...|.+..+.+........+++++.|.|+.++.+..|| +.. ..+..+.++.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4788999999999999999999999998888888777778889999999999999999999 444 35666666655544
Q ss_pred CCCcccccccCCCcccCCCCCCccceEE-ecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIF-VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~Lf-VgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.......... ... ......++| |.+|+..+++++|+.+|..++.|+.++++.++.+...++|++|+|.+.+..
T Consensus 167 ~~~~~~~n~~-----~~~-~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 167 RRGLRPKNKL-----SRL-SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cccccccchh-----ccc-ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 3331111110 001 112334455 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCeEEEEeecCCCCC
Q 011518 161 DKVLLKTFHELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 161 ~~Al~~~~~~l~Gr~I~V~~a~~k~~ 186 (484)
..++....+.+.++.+.|....+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 241 KLALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHHhhcccCcccCcccccccCCCCcc
Confidence 99998723788899999988876643
No 104
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.07 E-value=1.8e-11 Score=114.69 Aligned_cols=134 Identities=22% Similarity=0.287 Sum_probs=112.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
..+++|||.||...++||-|.|+|-+-|+|..|.|..++ ..+.| ||||+|+++-...-|+ ++...+.++++.++
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~-- 82 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT-- 82 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhcc--
Confidence 457899999999999999999999999999999999886 56677 9999999999999998 67776666666554
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecc----cccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGG----LASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgn----Lp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
++.++ |...+++|.+.+.|+.-+.|..+++..+.+ ++++.+.||.+..
T Consensus 83 ---------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr 134 (267)
T KOG4454|consen 83 ---------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQR 134 (267)
T ss_pred ---------------------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhh
Confidence 33333 667799999999999999999999998876 8889999999977
Q ss_pred HHHHHHHHHHHh
Q 011518 157 EEAVDKVLLKTF 168 (484)
Q Consensus 157 ~e~A~~Al~~~~ 168 (484)
..+.-.++....
T Consensus 135 ~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 135 LCAVPFALDLYQ 146 (267)
T ss_pred hhcCcHHhhhhc
Confidence 777666665443
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.06 E-value=6.7e-10 Score=111.18 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=123.9
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh----hhccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al----~~~~~i~Gr~I~V~~a 80 (484)
+-.|.|++|-..++|.+|.|.++.||+|..|.++..+ ..|.|||+|.+-|+.++ .+...+.++...+.++
T Consensus 31 spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 31 SPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 4578999999999999999999999999888877653 36999999999999998 4556777777777766
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEE--ecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIF--VGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEE 158 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Lf--VgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e 158 (484)
..+....... ......+.|. |-|--+.+|.+.|.+++..+|+|.+|.|++. ++. -|.|||++.+
T Consensus 105 tsq~i~R~g~---------es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~ 170 (494)
T KOG1456|consen 105 TSQCIERPGD---------ESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVE 170 (494)
T ss_pred hhhhhccCCC---------CCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhH
Confidence 5433222111 1112233443 4455567999999999999999999999865 233 4999999999
Q ss_pred HHHHHHHHHh-hh-hcC-eEEEEeecCCCCC
Q 011518 159 AVDKVLLKTF-HE-LNG-KMVEVKRAVPKEL 186 (484)
Q Consensus 159 ~A~~Al~~~~-~~-l~G-r~I~V~~a~~k~~ 186 (484)
.|++|.+.++ .+ .-| ..|+|++|+|.+.
T Consensus 171 ~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 171 VAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred HHHHHHhhcccccccccceeEEEEecCccee
Confidence 9999999888 43 344 5889999988654
No 106
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.4e-10 Score=97.03 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=70.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
..+.|||+|||.++|.||+-++|.+||+|.+|+|=.++. .+|-|||.|++..+|++|+ ++...++++.+.|-...
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 467899999999999999999999999999999988764 5799999999999999999 88899999999998776
Q ss_pred CCCc
Q 011518 82 PRDD 85 (484)
Q Consensus 82 ~~~~ 85 (484)
+.+.
T Consensus 94 ~~~~ 97 (124)
T KOG0114|consen 94 PEDA 97 (124)
T ss_pred HHHH
Confidence 5443
No 107
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.03 E-value=1.8e-10 Score=112.12 Aligned_cols=71 Identities=23% Similarity=0.542 Sum_probs=66.8
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
.+|||+|||..+++.+|+.+|++||+|++|+|+++ |+||+.++..+++.||..++ ..|+|..|.|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 57999999999999999999999999999999966 99999999999999999777 7999999999988776
No 108
>smart00361 RRM_1 RNA recognition motif.
Probab=99.02 E-value=6.1e-10 Score=88.28 Aligned_cols=61 Identities=21% Similarity=0.487 Sum_probs=54.7
Q ss_pred hhHHHHHhh----hcCceeeEE-EEeeCCC--CCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 119 ESDFKKYFD----QFGIITDVV-VMYDHNT--QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 119 eedL~~~F~----~~G~I~~v~-i~~d~~t--g~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
++||+++|+ +||.|.+|. |+.++.+ ++++|++||+|.++++|++|++.++ +.+.+++|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678888888 999999995 7777776 8899999999999999999999988 89999999873
No 109
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.95 E-value=1.8e-09 Score=81.53 Aligned_cols=55 Identities=27% Similarity=0.561 Sum_probs=49.1
Q ss_pred HHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 122 FKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 122 L~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
|+++|++||+|++|.+..++ +++|||+|.+.++|++|++.++ ..|.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 5799999999999999999998 8999999999875
No 110
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.2e-09 Score=108.69 Aligned_cols=83 Identities=20% Similarity=0.370 Sum_probs=77.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
..++.+.|||-.|.+-+|+|||+-+|+.||+|+.|.|++|..|+.+..||||+|++.+++++|.-+|+ ..|+.++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 34567899999999999999999999999999999999999999999999999999999999999988 79999999998
Q ss_pred ecCC
Q 011518 180 RAVP 183 (484)
Q Consensus 180 ~a~~ 183 (484)
++..
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8644
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.92 E-value=1.4e-08 Score=101.86 Aligned_cols=163 Identities=19% Similarity=0.236 Sum_probs=121.5
Q ss_pred cccceEEeeeccC-CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWD-TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~-~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
+.+.++|-+|... ++-+.|..+|..||.|+.|+.|+.+. +-|.||+.|..+.++|+ +++..+.+.+|+|..+
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-----gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-----GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-----ceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 4567899999975 68889999999999999999999762 67999999999999999 8888899999998766
Q ss_pred CCCCcccccc----------------cCC---Ccc--cCCCCCCccceEEecccccccchhHHHHHhhhcCc-eeeEEEE
Q 011518 81 VPRDDQNIQN----------------RNN---SSI--HGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGI-ITDVVVM 138 (484)
Q Consensus 81 ~~~~~~~~~~----------------~~~---~~~--~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~-I~~v~i~ 138 (484)
+......... ++. ... ....-..+++.|+.-|.|..+|||+|.++|..... -++|+|.
T Consensus 361 kQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvF 440 (494)
T KOG1456|consen 361 KQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVF 440 (494)
T ss_pred cccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEee
Confidence 4322111100 000 000 00112346788999999999999999999976654 3566776
Q ss_pred eeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcC
Q 011518 139 YDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNG 173 (484)
Q Consensus 139 ~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G 173 (484)
.-+. .+ .-.+.+||++.++|..||.+++ ..+++
T Consensus 441 p~ks-er-SssGllEfe~~s~Aveal~~~NH~pi~~ 474 (494)
T KOG1456|consen 441 PLKS-ER-SSSGLLEFENKSDAVEALMKLNHYPIEG 474 (494)
T ss_pred cccc-cc-cccceeeeehHHHHHHHHHHhccccccC
Confidence 5553 22 2368999999999999999988 45655
No 112
>smart00361 RRM_1 RNA recognition motif.
Probab=98.90 E-value=1.5e-09 Score=85.94 Aligned_cols=60 Identities=32% Similarity=0.494 Sum_probs=53.2
Q ss_pred chHHHHHHHH----hhhhhhhhe-eeccccc--ccccceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 18 NEDRLRDYFQ----AFGEVLEAV-IMKDRAT--GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 18 teeeL~e~Fs----~~G~V~~v~-I~~d~~t--g~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
.+++|+++|+ +||+|..|. |+.++.+ ++++||+||+|.++++|++|+ ++...+.++.|.+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 3688999998 999999996 7777656 889999999999999999999 8899999999876
No 113
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=2.1e-09 Score=103.00 Aligned_cols=166 Identities=16% Similarity=0.303 Sum_probs=124.6
Q ss_pred ceEEeeeccCCchHH-H--HHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 7 KLFIGGISWDTNEDR-L--RDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 7 ~LfVgnLP~~~teee-L--~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
.+++.++-.++..+- | ...|+.+-.+...++++++ .++.++++|+.|+..++-.++- .+++.+.-++|++....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 345555555655554 3 6677777777777788775 5677889999999887777776 44445544555444333
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVD 161 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~ 161 (484)
.-++....+ -+....+||++.|--+++++.|.+.|.+|-.....++++|+.|++++||+||.|.+.+++.
T Consensus 177 swedPsl~e----------w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~ 246 (290)
T KOG0226|consen 177 SWEDPSLAE----------WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYV 246 (290)
T ss_pred ccCCccccc----------CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHH
Confidence 322221111 2345678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-hhhcCeEEEEeecCC
Q 011518 162 KVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 162 ~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
+|+..|+ +.+..|.|+++...-
T Consensus 247 rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 247 RAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred HHHHhhcccccccchhHhhhhhH
Confidence 9999998 788888888765433
No 114
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.84 E-value=3.2e-09 Score=114.68 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=85.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
-+|||||+.|+++++|+||+++|++||+|++|+++.. ++||||++...++|++|| ++++.+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 3789999999999999999999999999999999875 589999999999999999 88999999999999998
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhh
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQ 128 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~ 128 (484)
-+-.+.. .. . --...|=|.-||+..-.+||+.+++.
T Consensus 494 g~G~kse-~k-~---------~wD~~lGVt~IP~~kLt~dl~~~~eg 529 (894)
T KOG0132|consen 494 GKGPKSE-YK-D---------YWDVELGVTYIPWEKLTDDLEAWCEG 529 (894)
T ss_pred cCCcchh-hh-h---------hhhcccCeeEeehHhcCHHHHHhhhh
Confidence 6544330 00 0 01122345567888655667777763
No 115
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.2e-09 Score=105.72 Aligned_cols=80 Identities=24% Similarity=0.437 Sum_probs=75.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...+.|||..|.+-+|+|+|.-+|+.||+|..|.|++|+.|+.+.-||||||.+++++++|. |++..|+.+.|.|..+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 45789999999999999999999999999999999999999999999999999999999999 9999999999999876
Q ss_pred CC
Q 011518 81 VP 82 (484)
Q Consensus 81 ~~ 82 (484)
..
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.81 E-value=2.9e-09 Score=116.69 Aligned_cols=161 Identities=22% Similarity=0.343 Sum_probs=124.4
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
..+++||++||+..+++.+|+..|..+|.|++|.|...+ -++-.-|+||.|.+.+.+-+|+ +....|..-.+.+..-
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 457899999999999999999999999999999998764 3444568999999999988887 3333333323322222
Q ss_pred CCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 81 VPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
.+ ....++.|+|+.|..++....|.++|..||.|..|.+-. +++ ||+|.|++...+
T Consensus 449 ~~------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----gq~--yayi~yes~~~a 504 (975)
T KOG0112|consen 449 QP------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----GQP--YAYIQYESPPAA 504 (975)
T ss_pred cc------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----CCc--ceeeecccCccc
Confidence 11 124568899999999999999999999999999987742 233 999999999999
Q ss_pred HHHHHHHh-hhhcC--eEEEEeecCCCCCCC
Q 011518 161 DKVLLKTF-HELNG--KMVEVKRAVPKELSP 188 (484)
Q Consensus 161 ~~Al~~~~-~~l~G--r~I~V~~a~~k~~~~ 188 (484)
++|++.+. .-|.+ +.|.|.++.+....+
T Consensus 505 q~a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 505 QAATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred hhhHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 99998776 44443 678888887765433
No 117
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=3.1e-09 Score=102.42 Aligned_cols=83 Identities=29% Similarity=0.508 Sum_probs=77.3
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.|-|+|||-.||.+..+.||.+.|-.||.|++.+|..|+.|+.+|.|+||.|.++.+|+.|| ++...|.-++|+|...
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 46799999999999999999999999999999999999999999999999999999999999 8998998899998877
Q ss_pred CCCCc
Q 011518 81 VPRDD 85 (484)
Q Consensus 81 ~~~~~ 85 (484)
+|++.
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 76654
No 118
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.77 E-value=1.8e-08 Score=109.12 Aligned_cols=79 Identities=29% Similarity=0.546 Sum_probs=71.7
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecC
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAV 182 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~ 182 (484)
..+||||+.|+..++|+||+.+|+.||+|..|.++. +++||||+....++|.+|+.+|. ..+..+.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 357999999999999999999999999999998864 46799999999999999999998 89999999999998
Q ss_pred CCCCCC
Q 011518 183 PKELSP 188 (484)
Q Consensus 183 ~k~~~~ 188 (484)
-+..+.
T Consensus 494 g~G~ks 499 (894)
T KOG0132|consen 494 GKGPKS 499 (894)
T ss_pred cCCcch
Confidence 775544
No 119
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.76 E-value=7.8e-09 Score=77.99 Aligned_cols=54 Identities=33% Similarity=0.624 Sum_probs=48.3
Q ss_pred HHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 22 LRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 22 L~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
|+++|++||+|+++.+.+++ +++|||+|.+.++|++|+ ++...+.+++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999998764 589999999999999999 8999999999999864
No 120
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=2.6e-08 Score=99.39 Aligned_cols=82 Identities=30% Similarity=0.590 Sum_probs=71.7
Q ss_pred CCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh--hhhcCeE
Q 011518 98 GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKM 175 (484)
Q Consensus 98 ~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~ 175 (484)
.++.+...++|||++|-..++|.||+++|.+||+|+.|.++.. +++|||+|.+.++|+.|.++.. ..|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 3445556789999999999999999999999999999999855 3489999999999999999866 6899999
Q ss_pred EEEeecCCCC
Q 011518 176 VEVKRAVPKE 185 (484)
Q Consensus 176 I~V~~a~~k~ 185 (484)
|+|.|..+++
T Consensus 295 l~i~Wg~~~~ 304 (377)
T KOG0153|consen 295 LKIKWGRPKQ 304 (377)
T ss_pred EEEEeCCCcc
Confidence 9999998843
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.68 E-value=3.1e-08 Score=105.97 Aligned_cols=180 Identities=10% Similarity=0.022 Sum_probs=128.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
.|.+.+-+...+.+.++.|+++||... .|..+.|.+++......|-++|+|...+++++|+ .+...+-.|.++|..+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 467788889999999999999999764 3556666666555555789999999999999999 56666667888887664
Q ss_pred CCCcccccccC-------CCccc----------------CCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEE
Q 011518 82 PRDDQNIQNRN-------NSSIH----------------GSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM 138 (484)
Q Consensus 82 ~~~~~~~~~~~-------~~~~~----------------~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~ 138 (484)
........... ....+ ...+.....+|||..||..+++.++.++|...-.|++...+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 43321111100 00000 00122345789999999999999999999998888884333
Q ss_pred eeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 139 YDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 139 ~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
....+.+-++.|||+|..++++.+|+.... +.+..|.|+|.-...
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 333457778899999999877777776554 666777888865433
No 122
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.66 E-value=7e-08 Score=90.34 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=73.7
Q ss_pred CccceEEecccccccchhHHHHHhhhc-CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQF-GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
.....++|..||.-+.+.+|..+|.++ |.|+++++-+++.|+.+||||||+|++++.|+.|.+.|| ..|.++.|.|..
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 445678999999999999999999888 788888988999999999999999999999999999998 788999999987
Q ss_pred cCCC
Q 011518 181 AVPK 184 (484)
Q Consensus 181 a~~k 184 (484)
-.|.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6554
No 123
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.66 E-value=3.3e-08 Score=98.69 Aligned_cols=74 Identities=28% Similarity=0.551 Sum_probs=68.5
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh---hhccccccceeeecc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDGRTVEAKK 79 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al---~~~~~i~Gr~I~V~~ 79 (484)
...++|||++|-..++|.+|+++|.+||+|+.|.|+..+ ++|||+|.+.++|++|. .++..|+++.|.|.|
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~------~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK------GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc------ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 456899999999999999999999999999999998864 59999999999999999 678899999999999
Q ss_pred cCC
Q 011518 80 AVP 82 (484)
Q Consensus 80 a~~ 82 (484)
..+
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 988
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.60 E-value=4.4e-08 Score=91.65 Aligned_cols=80 Identities=23% Similarity=0.459 Sum_probs=73.0
Q ss_pred cccceEEeeeccCCchHHHHHHHHhh-hhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAF-GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~-G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
....++|..||.-+.|.+|..+|.++ |.|..+++-+++.||.+|+||||||+++|.|+-|. ||+..+.++.|+|..-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 35678999999999999999999998 78888888899999999999999999999999998 9999999999999877
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 665
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.59 E-value=1.3e-07 Score=92.06 Aligned_cols=84 Identities=24% Similarity=0.432 Sum_probs=75.9
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
....+|+|.|||..|+++||+++|++|+.++.+.|..|+. +++.|.|-|.|+..++|++|+++++ ..|+|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 4457899999999999999999999999999999999965 8999999999999999999999998 8999999999887
Q ss_pred CCCCCC
Q 011518 182 VPKELS 187 (484)
Q Consensus 182 ~~k~~~ 187 (484)
.+....
T Consensus 160 ~~~~~~ 165 (243)
T KOG0533|consen 160 SSPSQS 165 (243)
T ss_pred cCcccc
Confidence 665544
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.57 E-value=1.1e-07 Score=99.68 Aligned_cols=79 Identities=27% Similarity=0.552 Sum_probs=73.2
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
.+.|||.+|...+...||+.+|++||.|+-.+|+.+..+.-.++|+||++.+.++|.+||+.++ ++|.|+.|.|..++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 3679999999999999999999999999999999987777789999999999999999999999 899999999988754
No 127
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.50 E-value=2.3e-07 Score=88.07 Aligned_cols=79 Identities=22% Similarity=0.438 Sum_probs=70.8
Q ss_pred ccceEEecccccccchhHHHH----HhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 104 RTKKIFVGGLASTVTESDFKK----YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~----~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
+..+|||.||++.+..++|++ +|++||+|.+|...+. .+.||-|||.|++.+.|-.|+..++ .-|-|++++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 345999999999999999998 9999999999988744 5689999999999999999999988 8899999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
.+|..+.
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9987664
No 128
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.48 E-value=1.7e-07 Score=98.08 Aligned_cols=79 Identities=23% Similarity=0.439 Sum_probs=67.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
+-..|||+|||.++++++|+++|..||+|++..|......++...|+||+|.+.++++.|| .+...|.+++|.|+...+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3456999999999999999999999999999998775433444589999999999999999 778888899999876543
No 129
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=2.4e-07 Score=90.28 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=76.3
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeec
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRA 181 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a 181 (484)
..+.+.+||+|+...+|.++++.+|+.|+.|..+.|+.|+.++.+|+|+||+|.+.+.++.++.+...+|.++.|+|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 45678999999999999999999999999999999999999989999999999999999999993338999999999887
Q ss_pred CCC
Q 011518 182 VPK 184 (484)
Q Consensus 182 ~~k 184 (484)
+.+
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 665
No 130
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.45 E-value=5.4e-07 Score=90.08 Aligned_cols=82 Identities=27% Similarity=0.412 Sum_probs=73.3
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCcee--------eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL 171 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l 171 (484)
.+.....|||.+||.++|.+++.++|++||.|. .|+|.++.+ ++.||-|+|.|--+++++.||+.++ ..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 445667899999999999999999999999874 378888865 8999999999999999999999999 899
Q ss_pred cCeEEEEeecCC
Q 011518 172 NGKMVEVKRAVP 183 (484)
Q Consensus 172 ~Gr~I~V~~a~~ 183 (484)
.|++|+|.+|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999998754
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.43 E-value=2.6e-07 Score=97.00 Aligned_cols=78 Identities=24% Similarity=0.514 Sum_probs=71.8
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.++|||.+|+..+-..+|+.||++||+|+-++|+.+..+--.+.|+||++.+.++|.+|| ++...|+++.|.|++++.
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578999999999999999999999999999999988666667899999999999999999 888999999999988754
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.43 E-value=1.8e-07 Score=94.58 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=117.7
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc---ccccceeEEEEeChhhHHHhh-hhccccccceeeecc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKK 79 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t---g~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~ 79 (484)
..+.|.|.||.+.+|.+++..+|..+|+|.++.|+....+ ....-.|||.|.|.+.+..|. |.+..+-++.|.|..
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p 85 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRP 85 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEe
Confidence 3468999999999999999999999999999999874322 345568999999999999887 777777777777655
Q ss_pred cCCCCc-cc-c---------ccc-------------------CCCcccCCCCC----------CccceEEecccccccch
Q 011518 80 AVPRDD-QN-I---------QNR-------------------NNSSIHGSPGP----------ARTKKIFVGGLASTVTE 119 (484)
Q Consensus 80 a~~~~~-~~-~---------~~~-------------------~~~~~~~~~~~----------~~~~~LfVgnLp~~~te 119 (484)
...... .. . ... ........|.. .-.++|+|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 422111 00 0 000 00000001110 11267999999999999
Q ss_pred hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhc
Q 011518 120 SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELN 172 (484)
Q Consensus 120 edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~ 172 (484)
.++-+.|+.+|.|....+..... .-+|-|+|....+.+.|+..++.++.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~----s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSR----SSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCC----CcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999998877654322 33678999999999999988775544
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.43 E-value=2.5e-07 Score=97.44 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=105.3
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKK 79 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~ 79 (484)
++.+++|+|-|||.+|++++|+++|+.||+|.+|..... .++.+||+|-|..+|++|+ ++...|.++.|+...
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~ 146 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPG 146 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCC
Confidence 356899999999999999999999999999999665544 3589999999999999999 888888888887222
Q ss_pred cCCCCccccccc-----CCCcccCC-CCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeee
Q 011518 80 AVPRDDQNIQNR-----NNSSIHGS-PGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFIT 153 (484)
Q Consensus 80 a~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~ 153 (484)
...+........ ........ +..-....+|+ .|++..+..-++..|..++.++. ....-.. ---|++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-----hq~~~~ 219 (549)
T KOG4660|consen 147 GARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLLN-----HQRFVE 219 (549)
T ss_pred cccccchhcccchhhhhccchhhcCCCCCCcCCccee-eeccchhhhhhhcchhccCcccc-ccccchh-----hhhhhh
Confidence 211111100000 00000111 11112233433 39999998888888888887765 2221111 135778
Q ss_pred eccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 154 YDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 154 F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
|.+..++..++..+...+.+....+.+..
T Consensus 220 ~~~~~s~a~~~~~~G~~~s~~~~v~t~S~ 248 (549)
T KOG4660|consen 220 FADNRSYAFSEPRGGFLISNSSGVITFSG 248 (549)
T ss_pred hccccchhhcccCCceecCCCCceEEecC
Confidence 87777764333322233444444444443
No 134
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.40 E-value=4.3e-07 Score=88.57 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=71.9
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
....+|+|.|||..|+++||+|+|++|++++.+.|..++ ++++.|.|-|.|...++|++|+ ++...++++.|++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 345789999999999999999999999999999999986 8999999999999999999999 7789999999988765
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
.+.
T Consensus 160 ~~~ 162 (243)
T KOG0533|consen 160 SSP 162 (243)
T ss_pred cCc
Confidence 543
No 135
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.38 E-value=1.3e-07 Score=89.15 Aligned_cols=78 Identities=17% Similarity=0.225 Sum_probs=69.4
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
++..++|||.||-..|+||-|.++|-+-|.|.+|.|..+++ ++.| ||||+|+++-.+.-|++.++ ..|.++.|.|++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34568999999999999999999999999999999998876 5566 99999999999999999998 788888887765
Q ss_pred c
Q 011518 181 A 181 (484)
Q Consensus 181 a 181 (484)
-
T Consensus 84 r 84 (267)
T KOG4454|consen 84 R 84 (267)
T ss_pred c
Confidence 3
No 136
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.37 E-value=8.3e-08 Score=97.71 Aligned_cols=149 Identities=19% Similarity=0.331 Sum_probs=118.3
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhh-hhhheeecccccccccceeEEEEeChhhHHHhh---hhccccccceeeecccC
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGE-VLEAVIMKDRATGRARGFGFIVFADPAVAERVV---MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~-V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al---~~~~~i~Gr~I~V~~a~ 81 (484)
.+|||+||.+.++..+|+.+|...-. +..-.+++ .+|+||.+.+...|.+|+ ..+..+.|+.++|....
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-------~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-------SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-------cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 58999999999999999999976411 11111222 379999999999999999 44678889999998777
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEE-eeCCCCCccceeeeeeccHHHH
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM-YDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~-~d~~tg~~rG~aFV~F~s~e~A 160 (484)
+++ .+.+++-|+|+|....||.|..++.+|+.|+.|..+ .|.++ -..-|+|.+.+.+
T Consensus 75 ~kk------------------qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~ 132 (584)
T KOG2193|consen 75 PKK------------------QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQH 132 (584)
T ss_pred hHH------------------HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHH
Confidence 654 334668899999999999999999999999998653 33332 2456899999999
Q ss_pred HHHHHHHh-hhhcCeEEEEeecCC
Q 011518 161 DKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 161 ~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
+.||.+++ +.|....++|.+...
T Consensus 133 ~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 133 RQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred HHHHHhhcchHhhhhhhhcccCch
Confidence 99999998 889998888877533
No 137
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.28 E-value=1.1e-06 Score=88.40 Aligned_cols=84 Identities=24% Similarity=0.404 Sum_probs=75.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCcee--------eEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIIT--------DVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~--------~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (484)
.....+|||-+||..+++++|.++|.+|+.|. .|.|-+|++|.++|+-|.|.|++..+|++||+-.. +.|+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34567899999999999999999999999884 36788899999999999999999999999999888 8999
Q ss_pred CeEEEEeecCCCC
Q 011518 173 GKMVEVKRAVPKE 185 (484)
Q Consensus 173 Gr~I~V~~a~~k~ 185 (484)
+..|+|.+|..+.
T Consensus 143 gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 143 GNTIKVSLAERRT 155 (351)
T ss_pred CCCchhhhhhhcc
Confidence 9999999887655
No 138
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.28 E-value=4.6e-07 Score=88.26 Aligned_cols=82 Identities=17% Similarity=0.405 Sum_probs=75.9
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeeccc
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a 80 (484)
+.+.+.|||+|+...+|.++|+..|+.||.|..+.|.+|+.++.+|+|+||+|.+.+.++.++ ++...|.++.++|.+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTLK 177 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeeee
Confidence 567899999999999999999999999999999999999989899999999999999999999 7999999999998765
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 443
No 139
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.26 E-value=1.6e-06 Score=73.02 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=52.7
Q ss_pred cceEEeeeccCCchHHHHHHHHhh--hhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAF--GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~--G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+||+|+|||...|.++|.+++... ++..-+.++.|..+..+.|||||-|.+++.|.+..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~ 62 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFY 62 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHH
Confidence 689999999999999999999873 55666778888888899999999999999999888
No 140
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.25 E-value=8.4e-07 Score=84.86 Aligned_cols=72 Identities=26% Similarity=0.552 Sum_probs=64.1
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
.+|||++||+.+.+.||+++|..|+.|.+|.+. .+|+||+|++..+|+.|+..++ ++|.+.++.|.+++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 469999999999999999999999999999875 3489999999999999998888 7888888888888765
Q ss_pred C
Q 011518 185 E 185 (484)
Q Consensus 185 ~ 185 (484)
.
T Consensus 74 ~ 74 (216)
T KOG0106|consen 74 R 74 (216)
T ss_pred c
Confidence 4
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.21 E-value=8.9e-07 Score=85.28 Aligned_cols=82 Identities=27% Similarity=0.554 Sum_probs=74.1
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.++-+||++.|..++++|.|-..|.+|-.....++++|+.|+++|||+||.|.+++++.+|+ ++...+..|.|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 46779999999999999999999999999999999999999999999999999999999999 7888888888887766
Q ss_pred CCCC
Q 011518 81 VPRD 84 (484)
Q Consensus 81 ~~~~ 84 (484)
..++
T Consensus 268 ~wke 271 (290)
T KOG0226|consen 268 EWKE 271 (290)
T ss_pred hHHh
Confidence 5443
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.19 E-value=1.5e-07 Score=103.22 Aligned_cols=163 Identities=17% Similarity=0.130 Sum_probs=121.7
Q ss_pred ccceEEeeeccCCchH-HHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNED-RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~tee-eL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~ 82 (484)
-+++.+.++-+...+. .++..|..++.|+.|++...+..-...-+.++++..+.+++.+. .....+..+.+.|..+.+
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~ad~ 650 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLADA 650 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCCCc
Confidence 4566777777776555 67888999999999999874322222238899999999999998 667777778777777666
Q ss_pred CCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHH
Q 011518 83 RDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDK 162 (484)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~ 162 (484)
++....... .+.......++||.||+..+.++||+..|..++.|..+.|....++++.||+|+|+|..++.+.+
T Consensus 651 ~~~~~~~kv------s~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 651 EEKEENFKV------SPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred hhhhhccCc------CchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 552211110 00111234689999999999999999999999988777766566678999999999999999999
Q ss_pred HHHHHhhhhcC
Q 011518 163 VLLKTFHELNG 173 (484)
Q Consensus 163 Al~~~~~~l~G 173 (484)
||+.....+-+
T Consensus 725 aV~f~d~~~~g 735 (881)
T KOG0128|consen 725 AVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhh
Confidence 99988743333
No 143
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=3.6e-05 Score=83.07 Aligned_cols=75 Identities=16% Similarity=0.130 Sum_probs=63.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhh-heeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLE-AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~-v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
...|||..||..+++.++.++|...-.|++ |.|.+.+ +++.++.|||+|..++++.+|+ .+++.+..|.|+|+..
T Consensus 434 g~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 434 GGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 357999999999999999999999888888 6666555 7788899999999999988888 6777777888888654
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=2.8e-06 Score=89.70 Aligned_cols=70 Identities=19% Similarity=0.364 Sum_probs=62.7
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
..+++|+|-|||.+|++++|+++|+.||+|+.|+.- ...++.+||+|-|..+|++|++.++ .++.++.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 456899999999999999999999999999996543 3457799999999999999999999 899999988
No 145
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.03 E-value=2e-05 Score=66.43 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=65.0
Q ss_pred ceEEecccccccchhHHHHHhhhc--CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc----CeEEEE
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQF--GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN----GKMVEV 178 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~--G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~----Gr~I~V 178 (484)
++|.|+|||...|.++|.+++... +...-+-++.|..+....|||||-|.++++|.+-.+..+ +.+. .|.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999999763 556667788898888999999999999999999887766 5554 467788
Q ss_pred eecCC
Q 011518 179 KRAVP 183 (484)
Q Consensus 179 ~~a~~ 183 (484)
.+|+-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 87754
No 146
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.98 E-value=2.5e-05 Score=74.16 Aligned_cols=88 Identities=16% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEE-eeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc---CeE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM-YDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN---GKM 175 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~-~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~---Gr~ 175 (484)
.+...++|||.+||.++...||..+|..|---+.+.|. .++..+..+-++||+|.+.++|++|+.+++ ..|+ +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 34567999999999999999999999998766655554 334434455699999999999999998888 5554 567
Q ss_pred EEEeecCCCCCCC
Q 011518 176 VEVKRAVPKELSP 188 (484)
Q Consensus 176 I~V~~a~~k~~~~ 188 (484)
|+|++|+....+.
T Consensus 110 LhiElAKSNtK~k 122 (284)
T KOG1457|consen 110 LHIELAKSNTKRK 122 (284)
T ss_pred eEeeehhcCcccc
Confidence 8888876654433
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.91 E-value=1.3e-05 Score=86.65 Aligned_cols=82 Identities=24% Similarity=0.357 Sum_probs=72.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc---ccccceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT---GRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t---g~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
...++|||+||+..++|+.|...|..||+|..|+||..+.. -+.+-|+||.|-+..+|++|+ ++.+.+....+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 35789999999999999999999999999999999986532 466789999999999999999 8889999999999
Q ss_pred cccCCCC
Q 011518 78 KKAVPRD 84 (484)
Q Consensus 78 ~~a~~~~ 84 (484)
.|.++-.
T Consensus 252 gWgk~V~ 258 (877)
T KOG0151|consen 252 GWGKAVP 258 (877)
T ss_pred ccccccc
Confidence 8875433
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.84 E-value=3.3e-05 Score=66.25 Aligned_cols=68 Identities=26% Similarity=0.405 Sum_probs=44.0
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhh------hcCeEEEEe
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHE------LNGKMVEVK 179 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~------l~Gr~I~V~ 179 (484)
..|+|.+++..++.++|+++|++|+.|..|.+.+... .|+|.|.++++|++|++++... +.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999876533 6999999999999999987633 455544443
No 149
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.81 E-value=3.9e-05 Score=76.86 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=67.2
Q ss_pred CccceEEecccccccchhHHHHHhhhcC--ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFG--IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G--~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
.+..++||+||-|++|++||.+.+...| .|.++++..++..+++||||+|...++.++++.++.+. ++|.|..-.|.
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3456899999999999999999998877 47788889999999999999999999999999999988 78998765553
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.81 E-value=1.8e-05 Score=79.95 Aligned_cols=82 Identities=22% Similarity=0.362 Sum_probs=73.3
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhh--------heeecccccccccceeEEEEeChhhHHHhh--hhccccccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLE--------AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR 73 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~--------v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr 73 (484)
+.-+|||-+||..+++++|.++|.+|+.|.. |+|.+|+.|.+.|+-|.|.|.|+..|++|+ .+...+++.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 4568999999999999999999999998753 778899999999999999999999999999 788889999
Q ss_pred eeeecccCCCCc
Q 011518 74 TVEAKKAVPRDD 85 (484)
Q Consensus 74 ~I~V~~a~~~~~ 85 (484)
+|+|..+..+..
T Consensus 145 ~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 145 TIKVSLAERRTG 156 (351)
T ss_pred CchhhhhhhccC
Confidence 999888765553
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.79 E-value=2.6e-05 Score=84.31 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=72.8
Q ss_pred CCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeC---CCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEE
Q 011518 102 PARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH---NTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVE 177 (484)
Q Consensus 102 ~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~---~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~ 177 (484)
.+.++.|||+||++.+++++|-..|..||+|..|+|+..+ +..+.+-++||.|-+..+|++|++.++ ..+....++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567889999999999999999999999999999998765 345677799999999999999999988 788889999
Q ss_pred EeecCCC
Q 011518 178 VKRAVPK 184 (484)
Q Consensus 178 V~~a~~k 184 (484)
+-|.++-
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9887443
No 152
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.58 E-value=0.00024 Score=57.79 Aligned_cols=68 Identities=15% Similarity=0.292 Sum_probs=45.8
Q ss_pred ceEEecccccccchh----HHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEe
Q 011518 106 KKIFVGGLASTVTES----DFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVK 179 (484)
Q Consensus 106 ~~LfVgnLp~~~tee----dL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~ 179 (484)
..|+|.|||.+.+.. .|+++++.|| .|..|. .+.|+|.|.+++.|++|++.|+ ..+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 468999999987764 5667777886 455541 2469999999999999999998 88999999999
Q ss_pred ecCC
Q 011518 180 RAVP 183 (484)
Q Consensus 180 ~a~~ 183 (484)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 153
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.57 E-value=0.00012 Score=75.40 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=56.9
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEee---CCCC--Cc--------cceeeeeeccHHHHHHHHHHHhh
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYD---HNTQ--RP--------RGFGFITYDSEEAVDKVLLKTFH 169 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d---~~tg--~~--------rG~aFV~F~s~e~A~~Al~~~~~ 169 (484)
.+.++|.+-|||.+-.-|.|.++|..+|.|+.|+|... ++.. .+ +=+|+|+|+..++|.+|.+.++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 46789999999999888999999999999999999876 3221 11 44799999999999999999863
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.41 E-value=0.00018 Score=61.73 Aligned_cols=53 Identities=23% Similarity=0.444 Sum_probs=35.8
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+.|+|.+++.+++.++|++.|++|++|..|.+.+... -|+|.|.+++.|++|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHH
Confidence 4689999999999999999999999999999888642 6999999999999999
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.34 E-value=0.00069 Score=55.20 Aligned_cols=68 Identities=16% Similarity=0.323 Sum_probs=43.6
Q ss_pred cceEEeeeccCCchHHHHH----HHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 6 GKLFIGGISWDTNEDRLRD----YFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e----~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
..|+|.|||.+.+...|+. ++..|| +|.+| . .+.|+|.|.+++.|++|+ +++....+++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999988776554 555565 34333 2 246999999999999999 88999999999998
Q ss_pred ccCCC
Q 011518 79 KAVPR 83 (484)
Q Consensus 79 ~a~~~ 83 (484)
.....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 77543
No 156
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.26 E-value=0.0003 Score=70.71 Aligned_cols=73 Identities=18% Similarity=0.460 Sum_probs=61.8
Q ss_pred cceEEeeeccCCchHHHHHHHHhhh--hhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeec
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFG--EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAK 78 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G--~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~ 78 (484)
-.+||+||-|.+|++||.+.+...| .+.++++..++.++.+||||+|...+..+.++.+ +-+++|+++.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3589999999999999999998765 5788889999999999999999999988888887 66677777655554
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.26 E-value=0.00011 Score=73.94 Aligned_cols=79 Identities=23% Similarity=0.516 Sum_probs=71.3
Q ss_pred ceE-EeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhh-hccccccceeeecccCCCC
Q 011518 7 KLF-IGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM-QKHMIDGRTVEAKKAVPRD 84 (484)
Q Consensus 7 ~Lf-VgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~-~~~~i~Gr~I~V~~a~~~~ 84 (484)
++| |.+|+.++++++|+++|..+++|..+++..++.++.+++|++|+|.+.+.+.+++. ..+.+.++++.+.+..++.
T Consensus 186 ~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 186 TIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred cceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCCCc
Confidence 445 99999999999999999999999999999999999999999999999999999995 6778888999998877664
Q ss_pred c
Q 011518 85 D 85 (484)
Q Consensus 85 ~ 85 (484)
.
T Consensus 266 ~ 266 (285)
T KOG4210|consen 266 K 266 (285)
T ss_pred c
Confidence 4
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.09 E-value=0.00086 Score=50.24 Aligned_cols=52 Identities=27% Similarity=0.467 Sum_probs=41.3
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHH
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVL 164 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al 164 (484)
+.|-|.+.+.+..++.| ++|..||+|+++.+... +-..+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 45778888887775555 58889999999887632 238999999999999985
No 159
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.98 E-value=0.00095 Score=49.99 Aligned_cols=52 Identities=17% Similarity=0.388 Sum_probs=42.2
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+.|-|.+.|.+..+ +|.++|..||+|+.+.+... +-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 57889999987664 55668899999999887733 238999999999999986
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.85 E-value=0.0025 Score=67.78 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=58.8
Q ss_pred CccceEEecccccccchhHHHHHhh--hcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEE
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFD--QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVE 177 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~--~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~ 177 (484)
.+.+.|.|+.||.++-+|+||.+|+ .|-+++.|.+..+.. =||+|+++.||+.|.+.+. ++|.||+|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-------WyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-------WYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-------eEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3456778899999999999999995 588899998875532 6999999999999998776 589999886
Q ss_pred Eee
Q 011518 178 VKR 180 (484)
Q Consensus 178 V~~ 180 (484)
.++
T Consensus 246 ARI 248 (684)
T KOG2591|consen 246 ARI 248 (684)
T ss_pred hhh
Confidence 544
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.79 E-value=0.0024 Score=64.19 Aligned_cols=81 Identities=21% Similarity=0.463 Sum_probs=62.4
Q ss_pred ccceEEecccccccchhH----H--HHHhhhcCceeeEEEEeeCCCCC-ccce--eeeeeccHHHHHHHHHHHh-hhhcC
Q 011518 104 RTKKIFVGGLASTVTESD----F--KKYFDQFGIITDVVVMYDHNTQR-PRGF--GFITYDSEEAVDKVLLKTF-HELNG 173 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teed----L--~~~F~~~G~I~~v~i~~d~~tg~-~rG~--aFV~F~s~e~A~~Al~~~~-~~l~G 173 (484)
...-+||-+||+.+..|+ | .++|.+||.|.+|.|-+...... -.+. .+|+|.+.|+|.+||...+ ..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 446789999999988877 2 47899999999988765431111 1112 4999999999999999988 89999
Q ss_pred eEEEEeecCCC
Q 011518 174 KMVEVKRAVPK 184 (484)
Q Consensus 174 r~I~V~~a~~k 184 (484)
|.|+...-..|
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999776554
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.79 E-value=0.0014 Score=69.15 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=56.9
Q ss_pred ccceEEeeeccCCchHHHHHHHHh-hhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~-~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
.+||||+.||.-++-+||-.+|++ ||.|+.|-|=.|++-+.+||-+=|.|.+.++-.+||
T Consensus 370 rrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 370 RRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred cceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHH
Confidence 689999999999999999999995 999999999999888999999999999999999998
No 163
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.77 E-value=0.00066 Score=70.06 Aligned_cols=63 Identities=13% Similarity=0.234 Sum_probs=54.4
Q ss_pred CccccceEEeeeccCCchHHHHHHHHhhhhhhhheeecc---cccc---c-------ccceeEEEEeChhhHHHhh
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKD---RATG---R-------ARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d---~~tg---~-------skG~aFVeF~~~e~A~~Al 64 (484)
|+..++|.+.|||.|-.-|.|.++|..+|.|+.|+|.+- +.+. . .+-+|||||.+.+.|.+|.
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 467899999999999999999999999999999999776 3222 1 2578999999999999998
No 164
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.68 E-value=0.00061 Score=66.10 Aligned_cols=71 Identities=23% Similarity=0.437 Sum_probs=57.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeeccccc--------cccc----ceeEEEEeChhhHHHhh--hhccc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRAT--------GRAR----GFGFIVFADPAVAERVV--MQKHM 69 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~t--------g~sk----G~aFVeF~~~e~A~~Al--~~~~~ 69 (484)
....|||.+||+.++-..|+++|+.||+|-.|.|.....+ +.++ --++|||.++..|.++. +++..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999998876544 2222 23789999999999988 67766
Q ss_pred cccce
Q 011518 70 IDGRT 74 (484)
Q Consensus 70 i~Gr~ 74 (484)
|.+++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 66654
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.0013 Score=70.01 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=51.8
Q ss_pred ccceEEeeeccC--CchH----HHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc
Q 011518 5 LGKLFIGGISWD--TNED----RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID 71 (484)
Q Consensus 5 ~r~LfVgnLP~~--~tee----eL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~ 71 (484)
+..|+|-|+|.- ...+ -|.++|+++|+|+.+.+..+..++ ++||.|++|++..+|++|+ ++++.|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceec
Confidence 567899999953 2223 355788999999999999886554 9999999999999999999 5555444
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.56 E-value=0.0036 Score=60.94 Aligned_cols=93 Identities=18% Similarity=0.327 Sum_probs=75.1
Q ss_pred hhccccccceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCC
Q 011518 65 MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQ 144 (484)
Q Consensus 65 ~~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg 144 (484)
++.....++.++|..+.. ..|+|.||..-++.|.|++.|+.|++|...+++.|. ..
T Consensus 14 Ld~~~~~~~~lr~rfa~~-----------------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~ 69 (275)
T KOG0115|consen 14 LDGRFPKGRSLRVRFAMH-----------------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RG 69 (275)
T ss_pred cCCCCCCCCceEEEeecc-----------------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cc
Confidence 577777888888887752 569999999999999999999999999988777774 47
Q ss_pred CccceeeeeeccHHHHHHHHHHHh-h----hhcCeEEEEeec
Q 011518 145 RPRGFGFITYDSEEAVDKVLLKTF-H----ELNGKMVEVKRA 181 (484)
Q Consensus 145 ~~rG~aFV~F~s~e~A~~Al~~~~-~----~l~Gr~I~V~~a 181 (484)
++.+-.+|+|...-.+.+|+..+. . ...++++.|...
T Consensus 70 k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 70 KPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred cccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 788899999999988888888775 2 444556666544
No 167
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.21 E-value=0.0098 Score=50.54 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=50.4
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEE-EEeeC------CCCCccceeeeeeccHHHHHHHHHHHhhhhcCe-EE
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVV-VMYDH------NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK-MV 176 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~-i~~d~------~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr-~I 176 (484)
.+-|.|-+.|.. ....|-++|++||+|++.. +.++. ..........|+|+++.+|++||.++...|.|. .|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456888899988 4466778999999998764 11100 001223489999999999999999998888875 55
Q ss_pred EEeecC
Q 011518 177 EVKRAV 182 (484)
Q Consensus 177 ~V~~a~ 182 (484)
-|++..
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 576663
No 168
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=96.18 E-value=0.05 Score=54.15 Aligned_cols=164 Identities=10% Similarity=0.157 Sum_probs=100.2
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccc-------cccccceeEEEEeChhhHHHhh--------hhcc
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRA-------TGRARGFGFIVFADPAVAERVV--------MQKH 68 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~-------tg~skG~aFVeF~~~e~A~~Al--------~~~~ 68 (484)
.+|.|.+.|+..+++-+++.+.|.+|++|+.|.++.+.. .-+..-...+-|-+++.+.... .-+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999998751 1133457899999999887665 2234
Q ss_pred ccccceeeecccCCCCccccc-ccCCCcc---------cCCCCCCccceEEecccccccchhH-HHHHhh---hcC----
Q 011518 69 MIDGRTVEAKKAVPRDDQNIQ-NRNNSSI---------HGSPGPARTKKIFVGGLASTVTESD-FKKYFD---QFG---- 130 (484)
Q Consensus 69 ~i~Gr~I~V~~a~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~LfVgnLp~~~teed-L~~~F~---~~G---- 130 (484)
.+.-..+.+....-+-..... +.+.... ........+|.|.|. +...+.++| |.+.+. .-.
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceE
Confidence 455555555433211110000 0000000 011234567888874 334443333 333321 111
Q ss_pred ceeeEEEEeeC--CCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 131 IITDVVVMYDH--NTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 131 ~I~~v~i~~d~--~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.|+.|.|+... ...-++-||.++|-+...|...++.+.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 36777777532 334578899999999888777776655
No 169
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.18 E-value=0.011 Score=50.34 Aligned_cols=77 Identities=16% Similarity=0.295 Sum_probs=51.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHhhhhhhhhe-eecccc------cccccceeEEEEeChhhHHHhh-hhccccccce
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAV-IMKDRA------TGRARGFGFIVFADPAVAERVV-MQKHMIDGRT 74 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~-I~~d~~------tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~ 74 (484)
.+++.|-|=+.|+. ....|.++|++||+|++.. +.++.. .-....+-.|+|.++.+|++|| .+...+.+..
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 46778889999988 6677899999999988775 222100 0123458899999999999999 8888888754
Q ss_pred e-eeccc
Q 011518 75 V-EAKKA 80 (484)
Q Consensus 75 I-~V~~a 80 (484)
| -|++.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 4 45554
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.16 E-value=0.016 Score=44.83 Aligned_cols=55 Identities=18% Similarity=0.379 Sum_probs=45.2
Q ss_pred ccceEEecccccccchhHHHHHhhhc---CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHH
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQF---GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~---G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~ 166 (484)
+..+|+|+++. +++.+||+.+|..| ....+|..+-|. .|-|.|.+++.|.+||..
T Consensus 4 rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~ 61 (62)
T PF10309_consen 4 RPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVA 61 (62)
T ss_pred eeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHc
Confidence 45789999985 48889999999998 235678888774 489999999999999965
No 171
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.09 E-value=0.0063 Score=61.20 Aligned_cols=77 Identities=18% Similarity=0.461 Sum_probs=59.6
Q ss_pred cceEEeeeccCCchHHH------HHHHHhhhhhhhheeeccc-cccccccee--EEEEeChhhHHHhh--hhccccccce
Q 011518 6 GKLFIGGISWDTNEDRL------RDYFQAFGEVLEAVIMKDR-ATGRARGFG--FIVFADPAVAERVV--MQKHMIDGRT 74 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL------~e~Fs~~G~V~~v~I~~d~-~tg~skG~a--FVeF~~~e~A~~Al--~~~~~i~Gr~ 74 (484)
.-|||-.||..+-.|++ .++|.+||+|..|.|-+.. ......+.+ +|.|.++|+|.+|| .+...++||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 45899999999877762 4799999999888876653 122223334 99999999999999 7889999999
Q ss_pred eeecccCC
Q 011518 75 VEAKKAVP 82 (484)
Q Consensus 75 I~V~~a~~ 82 (484)
|+..+-..
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 98876543
No 172
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.03 E-value=0.005 Score=63.09 Aligned_cols=77 Identities=12% Similarity=0.148 Sum_probs=64.4
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeC---CCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH---NTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~---~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
..|.|.||.+.+|.++++.||.-.|.|.++.|+... .-....-.|||.|.+.+.+..|..++++.|-++.|.|....
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 479999999999999999999999999999887632 11233458999999999999999999988888888886653
No 173
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.90 E-value=0.015 Score=56.65 Aligned_cols=58 Identities=24% Similarity=0.415 Sum_probs=53.1
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
..|+|.||+.-+..|.|.+.|+.||+|+..+++.|. .++..+-++|+|..+-.|.+|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~ 89 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAA 89 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHH
Confidence 679999999999999999999999999998888873 6778889999999999888888
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.81 E-value=0.015 Score=57.53 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=50.3
Q ss_pred hhHHHHHhhhcCceeeEEEEeeCCCCCcc-ceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 119 ESDFKKYFDQFGIITDVVVMYDHNTQRPR-GFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 119 eedL~~~F~~~G~I~~v~i~~d~~tg~~r-G~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
++++++.+++||+|.+|.|+.++..-... =-.||+|+..++|.+|+..++ ..|.||.+...+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46788999999999999998775322111 137999999999999999998 8999999887654
No 175
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.76 E-value=0.012 Score=57.37 Aligned_cols=72 Identities=11% Similarity=0.277 Sum_probs=57.6
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCC--------CCc----cceeeeeeccHHHHHHHHHHHh-hh
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNT--------QRP----RGFGFITYDSEEAVDKVLLKTF-HE 170 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~t--------g~~----rG~aFV~F~s~e~A~~Al~~~~-~~ 170 (484)
.+-.||+.+||+.+...-|+++|..||.|-+|-+.....+ +.. ---+.|+|.+...|+++.+.+| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567999999999999999999999999999988765433 111 1237899999999999998877 67
Q ss_pred hcCeE
Q 011518 171 LNGKM 175 (484)
Q Consensus 171 l~Gr~ 175 (484)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77654
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.70 E-value=0.028 Score=45.87 Aligned_cols=59 Identities=20% Similarity=0.316 Sum_probs=42.4
Q ss_pred CCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.+.+....||. +|.++...||.++|+.||.| .|..+.|. -|||...+.+.|+.|+....
T Consensus 5 ~P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 5 QPSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp --SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 34555667776 99999999999999999987 45555442 59999999999998886654
No 177
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.019 Score=61.37 Aligned_cols=75 Identities=19% Similarity=0.259 Sum_probs=57.7
Q ss_pred ccceEEeccccccc------chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhh-cCeE
Q 011518 104 RTKKIFVGGLASTV------TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HEL-NGKM 175 (484)
Q Consensus 104 ~~~~LfVgnLp~~~------teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l-~Gr~ 175 (484)
-...|+|.|+|.-- -..-|.++|+++|+|+.+.++.+.+.+ .+||.|++|.+..+|+.|++.++ +.| +.+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34678888888642 224567899999999999999887644 89999999999999999998777 443 3445
Q ss_pred EEEe
Q 011518 176 VEVK 179 (484)
Q Consensus 176 I~V~ 179 (484)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 178
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.59 E-value=0.0079 Score=49.80 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=45.7
Q ss_pred eEEEEeChhhHHHhh---hhccccccceeeecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHh
Q 011518 50 GFIVFADPAVAERVV---MQKHMIDGRTVEAKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYF 126 (484)
Q Consensus 50 aFVeF~~~e~A~~Al---~~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F 126 (484)
|+|.|.+++.|++.+ .+...+..+.+.|+...-......+.. .......++|.|.+||..+.+|+|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q-------v~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ-------VFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE-------EEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 689999999999999 334455566665543322111111100 0122456889999999999999998765
Q ss_pred h
Q 011518 127 D 127 (484)
Q Consensus 127 ~ 127 (484)
+
T Consensus 74 e 74 (88)
T PF07292_consen 74 E 74 (88)
T ss_pred E
Confidence 4
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.49 E-value=0.03 Score=50.55 Aligned_cols=56 Identities=18% Similarity=0.315 Sum_probs=44.9
Q ss_pred HHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCC
Q 011518 121 DFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (484)
Q Consensus 121 dL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k 184 (484)
+|-+.|..||+|+-|+++.+ .-.|+|.+-++|.+|+.+...+++|+.|+|+...|.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 66778888999888887754 479999999999999999889999999999987764
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.44 E-value=0.012 Score=57.53 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=47.8
Q ss_pred HHHHHHHH-hhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccC
Q 011518 20 DRLRDYFQ-AFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 20 eeL~e~Fs-~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~ 81 (484)
|||...|+ +||+|++++|-.+. --.-+|-++|+|..+|+|++|+ +++..+.+++|......
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444555 79999999776653 2245678999999999999999 89999999999887654
No 181
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.34 E-value=0.019 Score=61.76 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=60.8
Q ss_pred CCCccceEEecccccccchhHHHHHhh-hcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hh---hcCeE
Q 011518 101 GPARTKKIFVGGLASTVTESDFKKYFD-QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HE---LNGKM 175 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~teedL~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~---l~Gr~ 175 (484)
.....+.|||.||-.-+|.-+|++++. .++.|+++ ..|+. |-.|||.|.+.++|.+.++.|+ .. -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 334568899999999999999999998 56777777 33433 3479999999999999998887 43 35678
Q ss_pred EEEeecCCC
Q 011518 176 VEVKRAVPK 184 (484)
Q Consensus 176 I~V~~a~~k 184 (484)
|.|.++..-
T Consensus 514 L~adf~~~d 522 (718)
T KOG2416|consen 514 LIADFVRAD 522 (718)
T ss_pred eEeeecchh
Confidence 888776543
No 182
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.31 E-value=0.0083 Score=58.50 Aligned_cols=61 Identities=18% Similarity=0.280 Sum_probs=48.8
Q ss_pred hHHHHHhh-hcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 120 SDFKKYFD-QFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 120 edL~~~F~-~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
|||...|+ +||+|++++|-.+.. -.-+|-++|+|..+++|++|++.++ ..+.|++|...+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 45555555 899999987765432 3457789999999999999999998 8999999988775
No 183
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=94.99 E-value=0.019 Score=59.42 Aligned_cols=76 Identities=28% Similarity=0.453 Sum_probs=60.3
Q ss_pred ceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh--hhhcCeEEEEeecCC
Q 011518 106 KKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF--HELNGKMVEVKRAVP 183 (484)
Q Consensus 106 ~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~--~~l~Gr~I~V~~a~~ 183 (484)
.+||++||.+.++..||+.+|...-.-..-.++. ..+|+||.+.+...|.+|++.++ .++.|++++|....+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997642111111221 23599999999999999999988 599999999999888
Q ss_pred CCCC
Q 011518 184 KELS 187 (484)
Q Consensus 184 k~~~ 187 (484)
++.+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 7654
No 184
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.90 E-value=0.024 Score=59.53 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=56.5
Q ss_pred eEEeccccccc-chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCC
Q 011518 107 KIFVGGLASTV-TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPK 184 (484)
Q Consensus 107 ~LfVgnLp~~~-teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k 184 (484)
.|-+.-.|..+ +-++|..+|.+||+|..|.|-.... .|.|+|.+..+|-+|.......|++|.|+|.|..+-
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 34445555554 4589999999999999998865422 599999999998777766667899999999998773
No 185
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.85 E-value=0.017 Score=60.72 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCccccceEEeeeccCC-chHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeec
Q 011518 1 MEMELGKLFIGGISWDT-NEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAK 78 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~-teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~ 78 (484)
|+.|++.|-+.-+|..+ |-++|...|.+||+|+.|.|-.... .|.|+|++..+|-+|. .....|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 56788888888888886 6789999999999999999876532 5999999999995555 88899999999999
Q ss_pred ccCCCC
Q 011518 79 KAVPRD 84 (484)
Q Consensus 79 ~a~~~~ 84 (484)
|..+..
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987744
No 186
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.39 E-value=0.046 Score=54.30 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=49.3
Q ss_pred hHHHHHHHHhhhhhhhheeeccccccccc-ceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 19 EDRLRDYFQAFGEVLEAVIMKDRATGRAR-GFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 19 eeeL~e~Fs~~G~V~~v~I~~d~~tg~sk-G~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
|+++++.+++||.|..|.|..++..-... --.||+|...++|.+|+ ++...|.||.|....-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 46788999999999999988875322111 23799999999999999 8899999999876543
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.13 E-value=0.029 Score=52.68 Aligned_cols=69 Identities=12% Similarity=0.098 Sum_probs=38.7
Q ss_pred ccccceEEeeeccCCchHHHHHHHHh-hhhhh---hhee-ecccccc-cccceeEEEEeChhhHHHhh--hhccccc
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQA-FGEVL---EAVI-MKDRATG-RARGFGFIVFADPAVAERVV--MQKHMID 71 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~-~G~V~---~v~I-~~d~~tg-~skG~aFVeF~~~e~A~~Al--~~~~~i~ 71 (484)
.+..+|.|+.||+++||+++.+.++. +++.. .+.- ..+.... ..-.-|+|.|.+.+++...+ .+.+.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 45679999999999999999997665 44331 1110 1111111 11234999999999988777 4454443
No 188
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.75 E-value=0.11 Score=46.92 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=42.6
Q ss_pred HHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCCCC
Q 011518 21 RLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPRD 84 (484)
Q Consensus 21 eL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~~~ 84 (484)
+|.+.|..||+|.-+++..+ .-+|+|.+-+.|.+|+ ++...+.++.|.|+...+.-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccH
Confidence 56777788898776666655 4799999999999999 99999999999998765543
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.74 E-value=0.21 Score=44.92 Aligned_cols=76 Identities=16% Similarity=0.161 Sum_probs=58.7
Q ss_pred CCCccceEEecccccccc-hhHHHH---HhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEE
Q 011518 101 GPARTKKIFVGGLASTVT-ESDFKK---YFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~~t-eedL~~---~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I 176 (484)
..++..+|.|+=|..++. .|||+. .++.||+|..|.+.-. -.|.|.|++..+|-+|+...+...-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 446678898988777754 355554 4567999999887522 26999999999999999988888888999
Q ss_pred EEeecCC
Q 011518 177 EVKRAVP 183 (484)
Q Consensus 177 ~V~~a~~ 183 (484)
.+.|-.+
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9988543
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.69 E-value=0.063 Score=57.48 Aligned_cols=69 Identities=13% Similarity=0.212 Sum_probs=57.0
Q ss_pred ccccceEEeeeccCCchHHHHHHHHh--hhhhhhheeecccccccccceeEEEEeChhhHHHhh----hhccccccceee
Q 011518 3 MELGKLFIGGISWDTNEDRLRDYFQA--FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV----MQKHMIDGRTVE 76 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~teeeL~e~Fs~--~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al----~~~~~i~Gr~I~ 76 (484)
.+.|.|.|+.||..+-+|+||.||+. |-++.+|....+. -=||.|++.++|++|. ...++|.+++|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 35678899999999999999999976 7788888877653 2599999999999998 566788888886
Q ss_pred ec
Q 011518 77 AK 78 (484)
Q Consensus 77 V~ 78 (484)
.+
T Consensus 246 AR 247 (684)
T KOG2591|consen 246 AR 247 (684)
T ss_pred hh
Confidence 54
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=93.67 E-value=0.17 Score=39.20 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=43.1
Q ss_pred ccceEEeeeccCCchHHHHHHHHhh---hhhhhheeecccccccccceeEEEEeChhhHHHhhh
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAF---GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVM 65 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~---G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~ 65 (484)
..+|+|+++. +++.++|+.+|..| .....|..+.|. -|=|.|.+++.|.+||.
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHH
Confidence 4589999985 68889999999998 124567777774 48899999999999983
No 192
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.62 E-value=0.06 Score=58.79 Aligned_cols=114 Identities=17% Similarity=0.175 Sum_probs=74.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
.-+|||+||...+.++-++.++..||-|..++..+ |+|++|..+..+.+|+ +....++++.+.++....
T Consensus 40 ~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 40 RDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 45899999999999999999999999888877665 8999999999988888 677778787776654311
Q ss_pred CCcccccccC--CCcccCCCCCCccceEEecccccccchhHHHHHhh
Q 011518 83 RDDQNIQNRN--NSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFD 127 (484)
Q Consensus 83 ~~~~~~~~~~--~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~ 127 (484)
.-........ ....+.-.+....+.++|.++|....+...+..|.
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hhcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 0000000000 00001111112245667777777766665555554
No 193
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.46 E-value=0.032 Score=62.65 Aligned_cols=64 Identities=22% Similarity=0.423 Sum_probs=53.9
Q ss_pred ccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.+++||++||+..+++.+|+..|..+|.|.+|.|.+.+.... --|+||.|.+.+.+-.|+..+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~e-sa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTE-SAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcc-cchhhhhhhccccCcccchhhc
Confidence 457999999999999999999999999999999987754333 3489999999888888776554
No 194
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=92.45 E-value=0.1 Score=56.29 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=54.6
Q ss_pred ccceEEeeeccCCchHHHHHHHH-hhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccc---cceeeec
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQ-AFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMID---GRTVEAK 78 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs-~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~---Gr~I~V~ 78 (484)
++.|+|.||=.-+|+-+|++++. .++.|++++|-+-+ -.|||.|.+.++|.+.+ |++..|. .+.|.+.
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK------ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK------SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh------cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 67899999999999999999998 58889998765543 47999999999998887 6665553 3445444
Q ss_pred c
Q 011518 79 K 79 (484)
Q Consensus 79 ~ 79 (484)
+
T Consensus 518 f 518 (718)
T KOG2416|consen 518 F 518 (718)
T ss_pred e
Confidence 4
No 195
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.40 E-value=0.078 Score=49.73 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=45.4
Q ss_pred ccceEEecccccccchhHHHHHhhh-cCce---eeEEEEeeCCC-C-CccceeeeeeccHHHHHHHHHHHh-hhhcC---
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQ-FGII---TDVVVMYDHNT-Q-RPRGFGFITYDSEEAVDKVLLKTF-HELNG--- 173 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~-~G~I---~~v~i~~d~~t-g-~~rG~aFV~F~s~e~A~~Al~~~~-~~l~G--- 173 (484)
...+|.|++||+++||+++.+.+.. ++.. ..+.-..+... . ....-|+|.|.+.+++..-+...+ +.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999997776 5544 23331122111 1 122349999999999888776654 33322
Q ss_pred --eEEEEeecCC
Q 011518 174 --KMVEVKRAVP 183 (484)
Q Consensus 174 --r~I~V~~a~~ 183 (484)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 2445666543
No 196
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=91.86 E-value=0.92 Score=51.80 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=9.2
Q ss_pred eeeccHHHHHHHHHHHhhhh
Q 011518 152 ITYDSEEAVDKVLLKTFHEL 171 (484)
Q Consensus 152 V~F~s~e~A~~Al~~~~~~l 171 (484)
|+|.-..+|.+||..+...+
T Consensus 1086 IklqIshEaAAcItgLr~Am 1105 (1282)
T KOG0921|consen 1086 IKLQISHEAAACITGLRPAM 1105 (1282)
T ss_pred eeEeccHHHHHHHhhhHHHH
Confidence 34444444555555444333
No 197
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.43 E-value=0.33 Score=43.60 Aligned_cols=119 Identities=12% Similarity=0.004 Sum_probs=77.8
Q ss_pred cceEEeeec--cCCchHHHHHHHHh-hhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccC
Q 011518 6 GKLFIGGIS--WDTNEDRLRDYFQA-FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 6 r~LfVgnLP--~~~teeeL~e~Fs~-~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~ 81 (484)
+...|+.+. .+.+.+.|.+.+.+ +.....+.+..- ..++..++|.+++++++++ .....+.+..+.++...
T Consensus 16 ~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~ 90 (153)
T PF14111_consen 16 QLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWS 90 (153)
T ss_pred CeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhhc
Confidence 345566663 34567777777766 344334444442 2368999999999999999 55566777778777665
Q ss_pred CCCcccccccCCCcccCCCCCCccceEEecccccc-cchhHHHHHhhhcCceeeEEEEe
Q 011518 82 PRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLAST-VTESDFKKYFDQFGIITDVVVMY 139 (484)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~-~teedL~~~F~~~G~I~~v~i~~ 139 (484)
+........ .....-=|.|.+||.. .+++-|+++.+.+|++.+++...
T Consensus 91 ~~~~~~~~~----------~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t 139 (153)
T PF14111_consen 91 PDFNPSEVK----------FEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENT 139 (153)
T ss_pred ccccccccc----------eeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCC
Confidence 433211110 0011223567899998 67788999999999998887643
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.26 E-value=0.11 Score=52.84 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=61.6
Q ss_pred CccceEEecccccccchhHHH---HHhhhcCceeeEEEEeeCC--C-CCccceeeeeeccHHHHHHHHHHHh-hhhcCeE
Q 011518 103 ARTKKIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHN--T-QRPRGFGFITYDSEEAVDKVLLKTF-HELNGKM 175 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~---~~F~~~G~I~~v~i~~d~~--t-g~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~ 175 (484)
...+.+||-.|+..+.++++- +.|.+||.|.+|.+..+.. . --...-++|+|+.+|+|..||...+ ..++++.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 445678888999887666543 5788899999998888762 1 1122348999999999999999887 7888888
Q ss_pred EEEeecCCC
Q 011518 176 VEVKRAVPK 184 (484)
Q Consensus 176 I~V~~a~~k 184 (484)
|+..+..++
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777766655
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.00 E-value=1.2 Score=38.54 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=45.5
Q ss_pred cceEEecccccccchhHHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
...+.+...|..++.++|..+.+.+- .|..++|++|.. ..+-.++++|.+.++|++-.+..|
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fN 75 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFN 75 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhC
Confidence 34455556666677778877777664 467889988743 356679999999999999886665
No 200
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.85 E-value=0.75 Score=46.13 Aligned_cols=78 Identities=23% Similarity=0.275 Sum_probs=56.6
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCe-EEEEeecCCCC
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGK-MVEVKRAVPKE 185 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr-~I~V~~a~~k~ 185 (484)
=|-|-++|.... .-|-.+|++||+|++.+.... -.+-+|.|.+.-+|++||.+..+.|++. .|-|+.+..|.
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCCHH
Confidence 345556666543 456688999999987655422 2389999999999999999998878775 56788877776
Q ss_pred CCCCCC
Q 011518 186 LSPGPS 191 (484)
Q Consensus 186 ~~~~~~ 191 (484)
......
T Consensus 272 vi~~sn 277 (350)
T KOG4285|consen 272 VINGSN 277 (350)
T ss_pred Hhcccc
Confidence 655433
No 201
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=89.70 E-value=0.35 Score=39.60 Aligned_cols=50 Identities=16% Similarity=0.320 Sum_probs=36.5
Q ss_pred ceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
.||---+|+++...||.++|+.||.|. |..+.|. -|||...+++.|..|+
T Consensus 10 HVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~ 59 (87)
T PF08675_consen 10 HVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVM 59 (87)
T ss_dssp CEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHH
T ss_pred eEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHH
Confidence 344445999999999999999999864 4445542 5999999999999888
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=89.68 E-value=0.79 Score=41.29 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=51.0
Q ss_pred CccccceEEeeeccCCc-hHHH---HHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceee
Q 011518 2 EMELGKLFIGGISWDTN-EDRL---RDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVE 76 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~t-eeeL---~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~ 76 (484)
|.-..+|.|+=|.+++. .||| ...++.||+|..|.+.-.. -|.|.|+|..+|-+|+ .-.....+..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq-------savVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ-------SAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc-------eEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45567899988888873 3444 4556779999998876543 5999999999999999 333455566666
Q ss_pred ecc
Q 011518 77 AKK 79 (484)
Q Consensus 77 V~~ 79 (484)
+.|
T Consensus 156 CsW 158 (166)
T PF15023_consen 156 CSW 158 (166)
T ss_pred eec
Confidence 655
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=87.66 E-value=1.2 Score=46.98 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=51.9
Q ss_pred ccceEEeeeccCCchHHHHHHHHhh-hhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAF-GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMI 70 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~-G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i 70 (484)
.+.|+|--+|..+|-.||..|...+ -.|..++|++|... ++=..+|+|.+.++|.... .++..|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~F 140 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQF 140 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcC
Confidence 6789999999999999999999875 45888999997543 3445899999999999998 444444
No 204
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=87.64 E-value=0.96 Score=45.40 Aligned_cols=74 Identities=16% Similarity=0.227 Sum_probs=52.5
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccce-eeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRT-VEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~-I~V~~a~~ 82 (484)
+..|-|=++|.. .-.-|..+|++||+|++.+.... --|-.|.|.++.+|+||| .+...|++.. |-|+.+..
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhhcCeeeccceEEeeeecCC
Confidence 445666666665 33457889999999877665522 238899999999999999 7888887754 45666554
Q ss_pred CCc
Q 011518 83 RDD 85 (484)
Q Consensus 83 ~~~ 85 (484)
+..
T Consensus 270 ksv 272 (350)
T KOG4285|consen 270 KSV 272 (350)
T ss_pred HHH
Confidence 443
No 205
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=86.54 E-value=1.7 Score=37.67 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=39.0
Q ss_pred cceEEeeeccC-CchHHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 6 GKLFIGGISWD-TNEDRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 6 r~LfVgnLP~~-~teeeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
.+|.|--.|.. ++-++|..+.+.+- .|+.++|++|.. .++=.++|+|.+.++|++..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy 71 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFY 71 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHH
Confidence 34444455554 55566776666654 366777888743 35556999999999999988
No 206
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=84.50 E-value=0.65 Score=51.05 Aligned_cols=69 Identities=13% Similarity=0.170 Sum_probs=59.6
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEee
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKR 180 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~ 180 (484)
++..+|||+||-..+.++-++.+...||.|..++.+. |+|++|..+....+|+..+. ..++++.+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999998876542 89999999999999988877 688888877765
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=84.26 E-value=2.8 Score=33.32 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=33.6
Q ss_pred ccccchhHHHHHhhhcC-----ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeec
Q 011518 114 ASTVTESDFKKYFDQFG-----IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRA 181 (484)
Q Consensus 114 p~~~teedL~~~F~~~G-----~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a 181 (484)
-..++..+|..++.... .|-+|+|..+ |+||+-... .++.+++.++ ..++|++|.|+.|
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 34577888888886654 3556666543 789988554 6788888887 8999999999875
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=83.54 E-value=1.6 Score=41.31 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=43.5
Q ss_pred chhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh---hhhcCeEEEEeecCCCC
Q 011518 118 TESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF---HELNGKMVEVKRAVPKE 185 (484)
Q Consensus 118 teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~---~~l~Gr~I~V~~a~~k~ 185 (484)
..+.|+++|..+..+..+.+++.- +-..|.|.+.++|.+|...++ ..+.++.|+|.++.+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999888777442 248999999999999999876 47899999998885443
No 209
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=83.52 E-value=0.3 Score=54.98 Aligned_cols=28 Identities=14% Similarity=0.484 Sum_probs=24.0
Q ss_pred ccccceEEeeeccCC-chHHHHHHHHhhh
Q 011518 3 MELGKLFIGGISWDT-NEDRLRDYFQAFG 30 (484)
Q Consensus 3 ~d~r~LfVgnLP~~~-teeeL~e~Fs~~G 30 (484)
..+|+|+|..||.++ ++++|+++|.+..
T Consensus 206 ~ssRTvlis~LP~~~~~~e~L~~~~~kl~ 234 (827)
T COG5594 206 LSSRTVLISGLPSELRSDEELKELFDKLK 234 (827)
T ss_pred CCCceEEeecCChhhcCchhHHHHHhhcC
Confidence 368999999999986 7788999999864
No 210
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.94 E-value=2 Score=40.57 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=41.3
Q ss_pred CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hh--ccccccceeeecccCCC
Q 011518 17 TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQ--KHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 17 ~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~--~~~i~Gr~I~V~~a~~~ 83 (484)
-..++|+++|..+.++.++.+++.- +-..|.|.+.++|++|. ++ ...+.+..+++..+...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 3568899999999988887776642 23789999999999998 55 66888988988777433
No 211
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=82.74 E-value=0.97 Score=51.00 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=63.1
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-h--hhcCeEEEEeecCC
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-H--ELNGKMVEVKRAVP 183 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~--~l~Gr~I~V~~a~~ 183 (484)
+..+.|.+...+..-|..+|.+||.|..++.++|-+ .|.|+|.+.+.|..|++.++ + ...|-+.+|.+|++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 455677788888899999999999999999988865 79999999999999998776 4 45677788888887
Q ss_pred CCCCC
Q 011518 184 KELSP 188 (484)
Q Consensus 184 k~~~~ 188 (484)
-+...
T Consensus 374 ~~~~e 378 (1007)
T KOG4574|consen 374 LPMYE 378 (1007)
T ss_pred ccccc
Confidence 66544
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=82.67 E-value=0.41 Score=48.70 Aligned_cols=79 Identities=19% Similarity=0.417 Sum_probs=58.2
Q ss_pred cceEEeeeccCCchHHHH---HHHHhhhhhhhheeeccccc-cccc--ceeEEEEeChhhHHHhh--hhccccccceeee
Q 011518 6 GKLFIGGISWDTNEDRLR---DYFQAFGEVLEAVIMKDRAT-GRAR--GFGFIVFADPAVAERVV--MQKHMIDGRTVEA 77 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~---e~Fs~~G~V~~v~I~~d~~t-g~sk--G~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V 77 (484)
+.+||-.|+.++.++++. +.|.+||.|..|.+.+++.. ...- --++|.|..+|+|..|| .+...++++.+++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 567888899887555554 57888999998888887621 1111 12799999999999999 7788888888877
Q ss_pred cccCCCC
Q 011518 78 KKAVPRD 84 (484)
Q Consensus 78 ~~a~~~~ 84 (484)
.....+.
T Consensus 158 ~~gttky 164 (327)
T KOG2068|consen 158 SLGTTKY 164 (327)
T ss_pred hhCCCcc
Confidence 6665543
No 213
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.78 E-value=3 Score=45.39 Aligned_cols=126 Identities=18% Similarity=0.287 Sum_probs=72.2
Q ss_pred CccccceEEeeeccC-CchHHHHHHHHhh----hhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceee
Q 011518 2 EMELGKLFIGGISWD-TNEDRLRDYFQAF----GEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVE 76 (484)
Q Consensus 2 E~d~r~LfVgnLP~~-~teeeL~e~Fs~~----G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~ 76 (484)
+..+++|-|-||.|+ +.-++|.-+|+.| |.|..|.|.... |-... |....+.|.+++
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe------------FGkeR------M~eEeV~GP~~e 232 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE------------FGKER------MKEEEVHGPPKE 232 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh------------hhHHH------hhhhcccCChhh
Confidence 456899999999997 6888999999887 357777776642 22111 222334454444
Q ss_pred ecccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc
Q 011518 77 AKKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS 156 (484)
Q Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s 156 (484)
+.......... . ..+..-++-.++.+.+|. +.+++. -||.|+|++
T Consensus 233 l~~~~e~~~~s-------------------~-----sD~ee~~~~~~~kLR~Yq-~~rLkY----------YyAVvecDs 277 (650)
T KOG2318|consen 233 LFKPVEEYKES-------------------E-----SDDEEEEDVDREKLRQYQ-LNRLKY----------YYAVVECDS 277 (650)
T ss_pred hccccccCccc-------------------c-----cchhhhhhHHHHHHHHHH-hhhhee----------EEEEEEecC
Confidence 43222111100 0 011111112234444442 222222 289999999
Q ss_pred HHHHHHHHHHHh-hhhcC--eEEEEee
Q 011518 157 EEAVDKVLLKTF-HELNG--KMVEVKR 180 (484)
Q Consensus 157 ~e~A~~Al~~~~-~~l~G--r~I~V~~ 180 (484)
.+.|.+..+.|. .+|.. .+|.+++
T Consensus 278 i~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 278 IETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred chHHHHHHHhcCcceeccccceeeeee
Confidence 999999999988 66654 4455544
No 214
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=78.90 E-value=2.3 Score=33.52 Aligned_cols=63 Identities=14% Similarity=0.260 Sum_probs=47.6
Q ss_pred HHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCCC
Q 011518 20 DRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 20 eeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~~ 83 (484)
++|++.|...| +|.+|.-+..+.+.+..-.-||+++...+. +-+.+-..+.++.|+|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~-k~i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN-KEIYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc-cceeehHhhCCeEEEEecCCCC
Confidence 57888888877 577888777776777778889999877663 3345667788899999876544
No 215
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=77.24 E-value=2.8 Score=33.12 Aligned_cols=63 Identities=16% Similarity=0.262 Sum_probs=48.1
Q ss_pred HHHHHHHHhhh-hhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCCC
Q 011518 20 DRLRDYFQAFG-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 20 eeL~e~Fs~~G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~~ 83 (484)
++|++.|.+.| +|..|.-|..+.+..+.-.-||+.....+... +++-+.+.++.|.|++...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~-Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE-ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc-eEeehhhCCeeEEEecCccc
Confidence 57888888877 67888888877666677788999887655555 56778889999999876543
No 216
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.11 E-value=1.5 Score=45.61 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=45.7
Q ss_pred cceEEecccccccchhHHHHHhhhcCce-eeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~ 167 (484)
.+.|=|-++|.....|||-..|+.|+.- -+|+++.|. .||-.|++...|..||..-
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhcc
Confidence 4567889999999999999999999753 456666553 6999999999999999653
No 217
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=75.52 E-value=11 Score=42.53 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=46.1
Q ss_pred ceEEec-ccccccchhHHHHHhhhcCc-----eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEE
Q 011518 106 KKIFVG-GLASTVTESDFKKYFDQFGI-----ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEV 178 (484)
Q Consensus 106 ~~LfVg-nLp~~~teedL~~~F~~~G~-----I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V 178 (484)
.++||. +-...++..+|-.++..-+. |-.|+|..+ |.||+-... .++..++.+. ..+++++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPKG-MPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcChh-hHHHHHHHhccccccCCceEE
Confidence 345552 22344677777766654443 455666543 788988544 4677777776 7899999999
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
+.+....
T Consensus 558 ~~~~~~~ 564 (629)
T PRK11634 558 QLLGDAQ 564 (629)
T ss_pred EECCCCC
Confidence 9875443
No 218
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=73.47 E-value=3.6 Score=35.70 Aligned_cols=115 Identities=22% Similarity=0.319 Sum_probs=59.3
Q ss_pred eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh-hhccccccceeeecccCCCCccccccc
Q 011518 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV-MQKHMIDGRTVEAKKAVPRDDQNIQNR 91 (484)
Q Consensus 13 LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al-~~~~~i~Gr~I~V~~a~~~~~~~~~~~ 91 (484)
||+-++ +|.++|+.-|+|.+|..+.. +.| .+|.--+ --...++++ |++-..........+.
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq-------------ypd-ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~g- 72 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ-------------YPD-NDALLYVHGTLEQVDGN-IRIGSGQTPASVRIQG- 72 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec-------------cCC-chhhheeeeehhhccCc-EEEccCCCcccEEEec-
Confidence 666554 49999999999887654432 222 1221111 111234444 5554333221111111
Q ss_pred CCCcccCCCCCCccceEEecccccccchhHHHHHhhh---cCceeeEEEEeeCCCCCccceeeeeeccH
Q 011518 92 NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQ---FGIITDVVVMYDHNTQRPRGFGFITYDSE 157 (484)
Q Consensus 92 ~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~---~G~I~~v~i~~d~~tg~~rG~aFV~F~s~ 157 (484)
.+.....+| -|+++|-.+|+++|++ |--|++-.+.+|---.-+-..||..|...
T Consensus 73 ---------TPsgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 73 ---------TPSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred ---------CCCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 112223343 4889999999999975 54455555555421111223688888554
No 219
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.16 E-value=6.8 Score=30.84 Aligned_cols=62 Identities=19% Similarity=0.349 Sum_probs=45.2
Q ss_pred hHHHHHhhhcC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCCC
Q 011518 120 SDFKKYFDQFG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVPK 184 (484)
Q Consensus 120 edL~~~F~~~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~k 184 (484)
++|++.|...| .|..|.-+..+.+..+.-.-||+.+...+.+.+ .+ +.|.+.+|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 57888888877 467777777776677777888888776553333 34 6899999999876544
No 220
>TIGR02515 IV_pilus_PilQ type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure.
Probab=71.07 E-value=18 Score=38.56 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=72.2
Q ss_pred eccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC--hhhHHHhhhhcc----ccccceeeecccCCCCcc
Q 011518 13 ISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAERVVMQKH----MIDGRTVEAKKAVPRDDQ 86 (484)
Q Consensus 13 LP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~--~e~A~~Al~~~~----~i~Gr~I~V~~a~~~~~~ 86 (484)
+..++.+.+|+++|..+.....+.|+.++. -++-.-+.|.+ .++|-++|+... ..++..+.|....+....
T Consensus 4 vsl~~~~~~l~dvL~~la~~~g~NiVi~~~---V~g~Vtl~~~~v~~~~al~~Il~~~gl~~~~~gnvi~V~~~~~~~~~ 80 (418)
T TIGR02515 4 LSLNFQDIPVRTVLQVIAEFTNLNIVVSDS---VQGNITLRLKNVPWDQALDIILKSKGLDKRRDGNIIYIAPLDELAAQ 80 (418)
T ss_pred EEEEEeCCCHHHHHHHHHHHhCCeEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCCEEEECCEEEEecHHHHHHH
Confidence 445677889999999999888888887753 23445556653 456666663222 245667777644321111
Q ss_pred cccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhc----Cce--eeEEEEeeCCCCCccceeeeeeccHHHH
Q 011518 87 NIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF----GII--TDVVVMYDHNTQRPRGFGFITYDSEEAV 160 (484)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~----G~I--~~v~i~~d~~tg~~rG~aFV~F~s~e~A 160 (484)
...............+...+.+.+.. .+-+++.++.+.. ..+ ..-.|..|..++ .+|...+++..
T Consensus 81 ~~~~~~~~~~~~~~~~l~t~~f~l~y----~~a~~v~~~l~~~~~~~~~~l~~~~~v~~d~~~n-----~lvv~~~~~~~ 151 (418)
T TIGR02515 81 EKDELEAKKQIENLEPLQTELIQLNY----AKASDIAKVLTGDDGGKGSLLSPRGSVTVDPRTN-----TLIVTDIPENL 151 (418)
T ss_pred HHHHHHHHhhhhhccCcEEEEEEEeC----CcHHHHHHHHhhcccccccccCCCeeEEEECCcC-----eEEEEeCHHHH
Confidence 00000000000011112223333433 3556666666643 111 223455555433 67777777666
Q ss_pred HHHHHHH
Q 011518 161 DKVLLKT 167 (484)
Q Consensus 161 ~~Al~~~ 167 (484)
+++.+..
T Consensus 152 ~~i~~~i 158 (418)
T TIGR02515 152 ARIRKLI 158 (418)
T ss_pred HHHHHHH
Confidence 5554443
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=69.97 E-value=8.4 Score=30.54 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=30.5
Q ss_pred CCchHHHHHHHHhhhhhhh-----heeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeeccc
Q 011518 16 DTNEDRLRDYFQAFGEVLE-----AVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKA 80 (484)
Q Consensus 16 ~~teeeL~e~Fs~~G~V~~-----v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a 80 (484)
.++..+|..++.....|.. |.|..+ |+||+-... .|++++ +++..+.+++|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788899999988655554 334332 899987654 566666 7888999999998764
No 222
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=69.44 E-value=9.7 Score=40.43 Aligned_cols=66 Identities=15% Similarity=0.278 Sum_probs=52.8
Q ss_pred cceEEecccccccchhHHHHHhhhc-CceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhc
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQF-GIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELN 172 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~-G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~ 172 (484)
...|+|=-+|..+|..||-.|...+ -.|.+++|++|..- .+=.++|+|.+.++|+.-.+..| +.|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 6789999999999999999999765 45899999997542 33468999999999999886655 4443
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=69.24 E-value=15 Score=32.11 Aligned_cols=49 Identities=10% Similarity=0.304 Sum_probs=29.6
Q ss_pred cchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeecc-HHHHHHHHHHHh
Q 011518 117 VTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDS-EEAVDKVLLKTF 168 (484)
Q Consensus 117 ~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s-~e~A~~Al~~~~ 168 (484)
++-++|++.|..|..++ ++.+.++. -.+++++|+|.. -.-.+.|+...+
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHHHHH
Confidence 35588999999998774 66666653 568899999955 455566665444
No 224
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.94 E-value=11 Score=29.51 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=37.3
Q ss_pred CCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcccccccee
Q 011518 16 DTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTV 75 (484)
Q Consensus 16 ~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I 75 (484)
.++-+||+..+..|. -.+|+.|+ | | =||.|.+.++|++|. .+...+....|
T Consensus 11 ~~~v~d~K~~Lr~y~---~~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR---WDRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCC---cceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 578899999999985 35566665 3 3 389999999999999 45554444444
No 225
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=68.27 E-value=6.4 Score=40.06 Aligned_cols=32 Identities=13% Similarity=0.081 Sum_probs=22.8
Q ss_pred eEEEEeChhhHHHhhhhccccccceeeecccC
Q 011518 50 GFIVFADPAVAERVVMQKHMIDGRTVEAKKAV 81 (484)
Q Consensus 50 aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~ 81 (484)
|||.|+++++|+.|++..+..+.+.++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCCCCceEeeCC
Confidence 79999999999999954444444555555554
No 226
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=68.14 E-value=17 Score=36.44 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=35.9
Q ss_pred cceEEecccccccchhHHHHHhhhcCce-eeEEEEeeCCCCCccceeeeeeccHH
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGII-TDVVVMYDHNTQRPRGFGFITYDSEE 158 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I-~~v~i~~d~~tg~~rG~aFV~F~s~e 158 (484)
..-|+|.||+.++.-.||+..+.+.+.+ ..+.. .-+++-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 3569999999999999999999887654 23333 124567999996643
No 227
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=67.74 E-value=7.7 Score=30.65 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=45.6
Q ss_pred hHHHHHhhhcCc-eeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEEEEeecCC
Q 011518 120 SDFKKYFDQFGI-ITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMVEVKRAVP 183 (484)
Q Consensus 120 edL~~~F~~~G~-I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I~V~~a~~ 183 (484)
++|++.|+++|. +..|.-+..+.+..+-..-+|+.....+... .++ +.|++++|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 578888998884 7778777777777788888888877654444 234 689999999987643
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=66.30 E-value=15 Score=28.81 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=36.8
Q ss_pred ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCeEE
Q 011518 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGKMV 176 (484)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr~I 176 (484)
.++-+|||..+.+|.- .+|+.|+ + | =||.|.+.++|++|....+ +.+-.-+|
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 4778999999999963 2344443 2 3 5899999999999997766 44444433
No 229
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.32 E-value=8.3 Score=40.32 Aligned_cols=58 Identities=19% Similarity=0.118 Sum_probs=44.4
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhcc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKH 68 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~ 68 (484)
.+.|-|-++|.....+||...|+.|.. ..++|+.-..| .+|-.|.+...|..||.-+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvDdt-----halaVFss~~~AaeaLt~kh 448 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVDDT-----HALAVFSSVNRAAEALTLKH 448 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhc-CCceeEEeecc-----eeEEeecchHHHHHHhhccC
Confidence 457889999999999999999999975 34444432212 79999999999999993344
No 230
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=59.01 E-value=6.2 Score=44.86 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=55.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhcc--ccccceeeeccc
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKH--MIDGRTVEAKKA 80 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~--~i~Gr~I~V~~a 80 (484)
..+.++.|.+...+-.-|..+|++||.|.+++.+++-. .|.|+|.+.|.|..|+ +.++ ..-+-+.+|..+
T Consensus 298 qp~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~a 371 (1007)
T KOG4574|consen 298 QPKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFA 371 (1007)
T ss_pred cchhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEec
Confidence 34667778888899999999999999999999998853 6999999999999888 3332 223445555555
Q ss_pred CCC
Q 011518 81 VPR 83 (484)
Q Consensus 81 ~~~ 83 (484)
+..
T Consensus 372 k~~ 374 (1007)
T KOG4574|consen 372 KTL 374 (1007)
T ss_pred ccc
Confidence 443
No 231
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.86 E-value=25 Score=35.47 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=60.3
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeC-------CCCCccceeeeeeccHHHHHH----HHHHH---h
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDH-------NTQRPRGFGFITYDSEEAVDK----VLLKT---F 168 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~-------~tg~~rG~aFV~F~s~e~A~~----Al~~~---~ 168 (484)
-++|.|...||..+++-..+-+.|.+|++|+.|.++.+. +..+.+....+.|-+.+.+.. .++.+ .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999998775 112334568889988776543 22222 2
Q ss_pred hhhcCeEEEEeecCC
Q 011518 169 HELNGKMVEVKRAVP 183 (484)
Q Consensus 169 ~~l~Gr~I~V~~a~~ 183 (484)
+.|+-..|.|.+..-
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 578888888887653
No 232
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=57.75 E-value=5.6 Score=37.24 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=34.8
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccc--cccceeEEEEeChhhHHHhh
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATG--RARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg--~skG~aFVeF~~~e~A~~Al 64 (484)
.|++|.. |.+...++|.++.+ ++++.|.+.+.. .+ ..+|-.||+|.+.++|.+++
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~ 167 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFAND 167 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhh
Confidence 3455555 33333344444444 566666655432 33 57789999999999999987
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=56.76 E-value=12 Score=32.74 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=30.4
Q ss_pred ceEEeeeccC---------CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeCh-hhHHHhh
Q 011518 7 KLFIGGISWD---------TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADP-AVAERVV 64 (484)
Q Consensus 7 ~LfVgnLP~~---------~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~-e~A~~Al 64 (484)
.+.|-|+|.+ ++.++|++.|+.|.+++ ++.+.++. -.+++++|+|... .--..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHH
Confidence 3567788654 35678999999998864 66666542 5678999999764 3345555
No 234
>PHA00019 IV phage assembly protein
Probab=53.21 E-value=1.3e+02 Score=32.15 Aligned_cols=31 Identities=6% Similarity=0.244 Sum_probs=26.2
Q ss_pred eeccCCchHHHHHHHHhhhhhhhheeecccc
Q 011518 12 GISWDTNEDRLRDYFQAFGEVLEAVIMKDRA 42 (484)
Q Consensus 12 nLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~ 42 (484)
-+|.++.+.+|+++|.-++++..+.++.++.
T Consensus 23 ~~~l~f~~~dI~~vl~~la~~~g~NiVidp~ 53 (428)
T PHA00019 23 ALPVELNNSPIREFVSWYSQQTGKSVVLGPD 53 (428)
T ss_pred eeEEEecCCCHHHHHHHHHHhcCceEEECCC
Confidence 3566788999999999999999999888753
No 235
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=49.18 E-value=9.9 Score=35.64 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=41.6
Q ss_pred cceEEecccccccchhHHHHHhhh-cCceeeEEEEeeCCC-CCccceeeeeeccHHHHHHHHHHHhhhhcCeEE
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQ-FGIITDVVVMYDHNT-QRPRGFGFITYDSEEAVDKVLLKTFHELNGKMV 176 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~-~G~I~~v~i~~d~~t-g~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I 176 (484)
.+++|.. .|+++|.++.+= -+.+..|.+-+..+. ...+|-.||+|.+.+.|.++++.......-..|
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el 179 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETEL 179 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHH
Confidence 4566665 455555444431 167777766543221 256889999999999999988776543333333
No 236
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=48.20 E-value=17 Score=36.23 Aligned_cols=38 Identities=26% Similarity=0.484 Sum_probs=29.2
Q ss_pred CCCccceEEecccccc------------cchhHHHHHhhhcCceeeEEEE
Q 011518 101 GPARTKKIFVGGLAST------------VTESDFKKYFDQFGIITDVVVM 138 (484)
Q Consensus 101 ~~~~~~~LfVgnLp~~------------~teedL~~~F~~~G~I~~v~i~ 138 (484)
+..+..+||+..||-. .+++.|+..|+.||.|..|.|+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3345678888888843 3567899999999999888775
No 237
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.35 E-value=10 Score=39.70 Aligned_cols=63 Identities=11% Similarity=0.172 Sum_probs=51.4
Q ss_pred CccceEEecccccccchh--------HHHHHhhh--cCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHH
Q 011518 103 ARTKKIFVGGLASTVTES--------DFKKYFDQ--FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLL 165 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~tee--------dL~~~F~~--~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~ 165 (484)
...+.+|+.++....+.+ +++.+|.. ++++..+...+|......+|..|++|...+.+++.+.
T Consensus 172 ~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 172 QMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 344678888887776555 99999998 6778888888887667789999999999999999983
No 238
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=46.50 E-value=20 Score=36.36 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=26.9
Q ss_pred eeeeeccHHHHHHHHHHHhhhhcCeEEEEeecCCCCC
Q 011518 150 GFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKEL 186 (484)
Q Consensus 150 aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~~a~~k~~ 186 (484)
|||+|+++++|+.|++... ..+.+.++|+.|.++++
T Consensus 1 aFVtF~~~~~a~~~~q~~~-~~~~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLL-SKRPNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHh-cCCCCCceEeeCCCccc
Confidence 7999999999999998554 33346668887755543
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=46.30 E-value=19 Score=35.18 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=29.5
Q ss_pred CCccccceEEeeeccCCchHHHHHHHHhhhhhhhh
Q 011518 1 MEMELGKLFIGGISWDTNEDRLRDYFQAFGEVLEA 35 (484)
Q Consensus 1 mE~d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v 35 (484)
|..+.+.||+-|||..+|++.|+++.+.+|.|..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34567899999999999999999999999855443
No 240
>PRK10560 hofQ outer membrane porin HofQ; Provisional
Probab=45.91 E-value=1e+02 Score=32.36 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=36.4
Q ss_pred CchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeC--hhhHHHhhhhcc----ccccceeeeccc
Q 011518 17 TNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFAD--PAVAERVVMQKH----MIDGRTVEAKKA 80 (484)
Q Consensus 17 ~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~--~e~A~~Al~~~~----~i~Gr~I~V~~a 80 (484)
+.+.+|+++|..+.++....++.|+. -+|-.=+.+.+ .++|-.+++..+ ...+..+.|...
T Consensus 2 ~~~adI~~vl~~la~~~g~NiVidp~---V~G~VTl~~~~V~~~qal~~iL~~~gl~~~~~g~i~~I~p~ 68 (386)
T PRK10560 2 VDDVPVAQVLQALAEQEKLNLVVSPD---VSGTVSLHLTDVPWKQALQTVVKSAGLILRQEGNILSVHSQ 68 (386)
T ss_pred ccCCCHHHHHHHHHHhcCceEEECCC---CcceEEEEEeCCCHHHHHHHHHHhCCCcEEEeCCEEEEEch
Confidence 46778999999999999999888863 23444455543 334444442221 223555555543
No 241
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=42.41 E-value=19 Score=33.84 Aligned_cols=74 Identities=19% Similarity=0.197 Sum_probs=48.4
Q ss_pred ceEEecccccccch-----hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe-EEEE
Q 011518 106 KKIFVGGLASTVTE-----SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK-MVEV 178 (484)
Q Consensus 106 ~~LfVgnLp~~~te-----edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr-~I~V 178 (484)
..+.+..|+..+-. .+.+.+|.++-+.....+++ +.+...|-|.+++.|.+|..+++ ..|.++ .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 34555566655432 33445555554444333332 34467789999999999999888 799998 8888
Q ss_pred eecCCCC
Q 011518 179 KRAVPKE 185 (484)
Q Consensus 179 ~~a~~k~ 185 (484)
-++.+..
T Consensus 85 yfaQ~~~ 91 (193)
T KOG4019|consen 85 YFAQPGH 91 (193)
T ss_pred EEccCCC
Confidence 7776643
No 242
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=42.08 E-value=1.3e+02 Score=24.17 Aligned_cols=58 Identities=12% Similarity=0.107 Sum_probs=37.7
Q ss_pred EEecccccccchhHHHHHhhh-------cCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHH
Q 011518 108 IFVGGLASTVTESDFKKYFDQ-------FGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKT 167 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~~-------~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~ 167 (484)
|-.++||..+|.+||.+...+ +..|.-++...+.+. .|-||+.+=.++|++.++.++.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~--~k~~Cly~Ap~~eaV~~~~~~a 67 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDD--GKIFCLYEAPDEEAVREHARRA 67 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCC--CeEEEEEECCCHHHHHHHHHHc
Confidence 446788988999998887654 333444444444332 2457777778888888777554
No 243
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=41.17 E-value=8.4 Score=40.31 Aligned_cols=61 Identities=16% Similarity=0.139 Sum_probs=51.5
Q ss_pred cccceEEeeeccCCchH--------HHHHHHHh--hhhhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNED--------RLRDYFQA--FGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~tee--------eL~e~Fs~--~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
..|.+|+.++..+.+.+ +|...|.. .+++..+...++..+..++|-.|++|+..+.|++++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 35678888888776555 89999998 678888888888777888999999999999999988
No 244
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=40.23 E-value=7.2 Score=42.35 Aligned_cols=72 Identities=4% Similarity=0.059 Sum_probs=54.0
Q ss_pred CccceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh-hhhcCe
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF-HELNGK 174 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~-~~l~Gr 174 (484)
..+++|||.|++++++-++|+.+++.+--+.++.+-.+....+...+..|+|+.--.++.|+..++ +.+.-.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 456789999999999999999999998777777665554444455678999987777777776665 444433
No 245
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.87 E-value=60 Score=30.62 Aligned_cols=71 Identities=14% Similarity=0.203 Sum_probs=47.4
Q ss_pred ceEEeeeccCC-c----hHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccc-eeeec
Q 011518 7 KLFIGGISWDT-N----EDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGR-TVEAK 78 (484)
Q Consensus 7 ~LfVgnLP~~~-t----eeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr-~I~V~ 78 (484)
.|.+.+|+.++ + ....+.+|.+|-+..-..+++. .+..-|.|.+++.|.+|. ++...+.++ .++..
T Consensus 12 ~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 12 AIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred eeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 47777887664 2 2334566676766666555553 345678999999999998 677777777 66665
Q ss_pred ccCCC
Q 011518 79 KAVPR 83 (484)
Q Consensus 79 ~a~~~ 83 (484)
.+.+.
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 55443
No 246
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=36.44 E-value=7.6 Score=29.34 Aligned_cols=37 Identities=27% Similarity=0.394 Sum_probs=24.1
Q ss_pred ccceeeeeecc-HHHHHHHHHHHhhhhcCeEEEEeecC
Q 011518 146 PRGFGFITYDS-EEAVDKVLLKTFHELNGKMVEVKRAV 182 (484)
Q Consensus 146 ~rG~aFV~F~s-~e~A~~Al~~~~~~l~Gr~I~V~~a~ 182 (484)
++||+||..++ .++.--.-+.++..++|-++.|+...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999987 44444444556678899999998876
No 247
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=35.46 E-value=12 Score=31.16 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.8
Q ss_pred CccccceEEeeeccCCchHHHHHHHH
Q 011518 2 EMELGKLFIGGISWDTNEDRLRDYFQ 27 (484)
Q Consensus 2 E~d~r~LfVgnLP~~~teeeL~e~Fs 27 (484)
+...++|-|.+||..++||+|++.++
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 34578999999999999999998643
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=35.16 E-value=81 Score=25.49 Aligned_cols=55 Identities=7% Similarity=0.115 Sum_probs=39.2
Q ss_pred ceEEeeeccCCchHHHHHHHHhh-h-hhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAF-G-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~-G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
+-|+=.++.+++..||++.++.+ + +|..|..+..+. ..-=|||.+...+.|.++-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHH
Confidence 45666789999999999999984 3 355555554431 1124999999888887764
No 249
>PRK11901 hypothetical protein; Reviewed
Probab=33.77 E-value=58 Score=33.47 Aligned_cols=55 Identities=11% Similarity=0.251 Sum_probs=37.8
Q ss_pred ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeee--eeccHHHHHHHHHHHhhhhc
Q 011518 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVLLKTFHELN 172 (484)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV--~F~s~e~A~~Al~~~~~~l~ 172 (484)
...+++|++|.+++. +..+.|.+....+++. |..| .|.+.++|++|++.+...|.
T Consensus 253 as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~lq 309 (327)
T PRK11901 253 ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAEVQ 309 (327)
T ss_pred CCCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHHHH
Confidence 345778888888875 4556666554444433 4444 68999999999998875554
No 250
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.15 E-value=14 Score=39.24 Aligned_cols=77 Identities=6% Similarity=-0.177 Sum_probs=57.9
Q ss_pred ccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhh--hhccccccceeeecccCC
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVP 82 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~ 82 (484)
+.+.|+..||...++++|.-+|..++.|.-+.+.+....+..+-.+||.-.+ +.|..+| +.-+.+.+.++++..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 4567889999999999999999999999888887765555666677877654 4556666 556667777777666544
No 251
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=32.51 E-value=2.5e+02 Score=22.72 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=42.5
Q ss_pred ccccccchhHHHHHh-hhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEe
Q 011518 112 GLASTVTESDFKKYF-DQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (484)
Q Consensus 112 nLp~~~teedL~~~F-~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (484)
-+|..+.-+||++.. ..||.-.++....+ .-.|-..+.++.++|++.++..-.-+.|+|-
T Consensus 15 ~f~RPvkf~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~s~~~ksLRil 75 (79)
T cd06405 15 QFPRPVKFKDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDRSPHMKSLRIL 75 (79)
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHccCccccceeEe
Confidence 457777777777665 57998777766533 2577888999999999988754444555543
No 252
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=30.95 E-value=81 Score=35.13 Aligned_cols=57 Identities=14% Similarity=0.309 Sum_probs=38.5
Q ss_pred eEEecccccccch-hHHHHHhhhcCceeeEEEEeeCCCCCccceeeeee-----ccHHHHHHHHHHHhh
Q 011518 107 KIFVGGLASTVTE-SDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITY-----DSEEAVDKVLLKTFH 169 (484)
Q Consensus 107 ~LfVgnLp~~~te-edL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F-----~s~e~A~~Al~~~~~ 169 (484)
+|.--++++-+++ -.+...+...|+++.++|+.+-. .+|+.| +..+.++.||+.+..
T Consensus 791 ~i~ac~mDP~LDD~vmfA~kLr~lG~~v~l~vle~lP------HGFLnft~ls~E~~~~~~~CI~rl~~ 853 (880)
T KOG4388|consen 791 HIVACAMDPMLDDSVMFARKLRNLGQPVTLRVLEDLP------HGFLNFTALSRETRQAAELCIERLRL 853 (880)
T ss_pred eEEEeccCcchhHHHHHHHHHHhcCCceeehhhhcCC------ccceeHHhhCHHHHHHHHHHHHHHHH
Confidence 3333355544444 34566777889999999988754 467777 567788888877764
No 253
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=30.80 E-value=83 Score=25.41 Aligned_cols=87 Identities=17% Similarity=0.276 Sum_probs=38.9
Q ss_pred eeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHHHhhhhccccccceeeecccCCCCccccccc
Q 011518 12 GISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNR 91 (484)
Q Consensus 12 nLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~~~~~~~~~~ 91 (484)
..+..++.+.|.+++.. ..-.|++-| +||.+.+... ..+.+ .-+..+.+..........
T Consensus 7 ~~~~p~~~~~l~~~l~~----~~~~vlR~K--------G~v~~~~~~~--~~~~q---~v~~~~~~~~~~~~~~~~---- 65 (94)
T PF07683_consen 7 EFDRPFDPERLEAWLQE----LPGDVLRAK--------GIVWVADGPR--RLVFQ---GVGGRYDIEPAGRWWPPM---- 65 (94)
T ss_dssp EESS-B-HHHHHHHHHH----TTTTEEEEE--------EEE-BTT-SE--EEEEE---EETTEEEEE-EEEE-TT-----
T ss_pred EeCCCCCHHHHHHHHHh----CCCCEEEEE--------EEEEeCCcCe--EEEEE---eeCCEEEecccccccccc----
Confidence 45667889999999998 233454443 5665554322 11111 112223332111000000
Q ss_pred CCCcccCCCCCCccceEEecccccccchhHHHHHhhhc
Q 011518 92 NNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (484)
Q Consensus 92 ~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~ 129 (484)
......++-|+|+. ++.+++|++.|+.|
T Consensus 66 -------~~~~~~~~lV~IG~---~ld~~~l~~~l~~c 93 (94)
T PF07683_consen 66 -------LGEDRDSRLVFIGK---NLDKEALREALDAC 93 (94)
T ss_dssp ---------S---EEEEEEEE---S--HHHHHHHHHT-
T ss_pred -------cCCCCCeEEEEEEC---CCCHHHHHHHHHcc
Confidence 01234567788864 67789999999875
No 254
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.02 E-value=2.1e+02 Score=22.86 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=36.6
Q ss_pred eEEeeeccCCchHHHHHHHHhhhhhh----hheeecc-cccccccceeEEEEeChhhHHHhh
Q 011518 8 LFIGGISWDTNEDRLRDYFQAFGEVL----EAVIMKD-RATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 8 LfVgnLP~~~teeeL~e~Fs~~G~V~----~v~I~~d-~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
|-.++||..+|.++|.+.-.+.-.+. .|..++. -.....|-||+.+=.++|..+++.
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~ 64 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHA 64 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHH
Confidence 56788999999999998877643332 2222221 111234567888778888777766
No 255
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=29.48 E-value=85 Score=28.06 Aligned_cols=121 Identities=14% Similarity=0.074 Sum_probs=48.9
Q ss_pred cceEEeeec----cCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhh---HHHhh-hhccccccceeee
Q 011518 6 GKLFIGGIS----WDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV---AERVV-MQKHMIDGRTVEA 77 (484)
Q Consensus 6 r~LfVgnLP----~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~---A~~Al-~~~~~i~Gr~I~V 77 (484)
-.+++++|. ..+.-+||+++|+..| ..+|+-... + |- |.|.+.++ .+..| .......+..+.|
T Consensus 4 yiaLLRGINVGG~nki~MaeLr~~l~~~G-f~~V~Tyi~--S----GN--vvf~~~~~~~~l~~~ie~~l~~~fG~~v~v 74 (137)
T PF08002_consen 4 YIALLRGINVGGKNKIKMAELREALEDLG-FTNVRTYIQ--S----GN--VVFESDRDPAELAAKIEKALEERFGFDVPV 74 (137)
T ss_dssp EEEEESS-SBTTBS---HHHHHHHHHHCT--EEEEEETT--T----TE--EEEEESS-HHHHHHHHHHHHHHH-TT---E
T ss_pred EEEEEcceecCCCCcccHHHHHHHHHHcC-CCCceEEEe--e----CC--EEEecCCChHHHHHHHHHHHHHhcCCCeEE
Confidence 356777774 3478999999999987 455543332 2 22 34442222 22222 1112223333333
Q ss_pred cccCCCCcccccccCCCcccCCCCCCccceEEecccccccchhHHHHHhhhcCceeeEEEE
Q 011518 78 KKAVPRDDQNIQNRNNSSIHGSPGPARTKKIFVGGLASTVTESDFKKYFDQFGIITDVVVM 138 (484)
Q Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~ 138 (484)
-.-...+.......++.... .....++++|-=|....+.+.+.++-..-...+++.+.
T Consensus 75 ~vrs~~el~~i~~~nPf~~~---~~~~~~~~~v~fl~~~~~~~~~~~l~~~~~~~E~~~~~ 132 (137)
T PF08002_consen 75 IVRSAEELRAIIAANPFPWE---AEADPKRLYVTFLSGPPDAEALEELAAYDTGPERFRVG 132 (137)
T ss_dssp EEEEHHHHHHHHTT--GGGG---S----SEEEEEEE-TT--HHHHHHHHTS---SEEEEE-
T ss_pred EEeeHHHHHHHHHHCCCccc---ccCCcceEEEEEeCCCCCHHHHHHHhccCCCCcEEEEe
Confidence 22111111111111111110 11345677777788888888887777655555555553
No 256
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.37 E-value=1.1e+02 Score=25.09 Aligned_cols=55 Identities=7% Similarity=0.091 Sum_probs=39.5
Q ss_pred ceEEeeeccCCchHHHHHHHHhh-h-hhhhheeecccccccccceeEEEEeChhhHHHhh
Q 011518 7 KLFIGGISWDTNEDRLRDYFQAF-G-EVLEAVIMKDRATGRARGFGFIVFADPAVAERVV 64 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~~-G-~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~~Al 64 (484)
.-|+=-.+.+++..+|++.++.+ + +|..|..+..+. ..-=|||.+...+.|.++.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHH
Confidence 44555688999999999999984 3 355666555431 1124999999998888775
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=28.87 E-value=9.8 Score=41.37 Aligned_cols=58 Identities=9% Similarity=0.056 Sum_probs=41.8
Q ss_pred cccceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhhHH
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAVAE 61 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~A~ 61 (484)
.++.|||+||+++++-++|..+++.+--+..+-+..+....+...+.+|.|+---...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~ 287 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIK 287 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchH
Confidence 4678999999999999999999998765555554444333445567888886543333
No 258
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=28.84 E-value=52 Score=33.14 Aligned_cols=49 Identities=14% Similarity=0.091 Sum_probs=34.6
Q ss_pred cceEEeeeccCCchHHHHHHHHhhhhhhhheeecccccccccceeEEEEeChhh
Q 011518 6 GKLFIGGISWDTNEDRLRDYFQAFGEVLEAVIMKDRATGRARGFGFIVFADPAV 59 (484)
Q Consensus 6 r~LfVgnLP~~~teeeL~e~Fs~~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~ 59 (484)
.-|+|+|||.|+--.||+..+.+.+- +-..|... -..+-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~-~pm~iswk----g~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKREC-TPMSISWK----GHFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCC-CceeEeee----cCCcceeEecCCccC
Confidence 45999999999999999999987642 12222221 245679999987543
No 259
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=28.41 E-value=81 Score=26.15 Aligned_cols=33 Identities=9% Similarity=0.252 Sum_probs=23.7
Q ss_pred ceEEeeeccCCchHHHHHHHHh-hh-hhhhheeec
Q 011518 7 KLFIGGISWDTNEDRLRDYFQA-FG-EVLEAVIMK 39 (484)
Q Consensus 7 ~LfVgnLP~~~teeeL~e~Fs~-~G-~V~~v~I~~ 39 (484)
..|+=.++.++|..||++.++. |+ +|+.|..+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~ 55 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMN 55 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeE
Confidence 4556678999999999999998 44 244555433
No 260
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.34 E-value=1.5e+02 Score=24.38 Aligned_cols=55 Identities=11% Similarity=0.206 Sum_probs=38.9
Q ss_pred EecccccccchhHHHHHhhh-cC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHH
Q 011518 109 FVGGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166 (484)
Q Consensus 109 fVgnLp~~~teedL~~~F~~-~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~ 166 (484)
|+-.++..++..||++.+++ |+ .|..|..+.-+.. .--|+|++...++|.....+
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~---~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKG---EKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---cEEEEEEeCCCCcHHHHHHh
Confidence 34456888999999999987 55 4677766654421 22599999988888776644
No 261
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=28.15 E-value=43 Score=32.97 Aligned_cols=24 Identities=17% Similarity=0.315 Sum_probs=16.3
Q ss_pred chHHHHHHHHhhhhhhhheeeccc
Q 011518 18 NEDRLRDYFQAFGEVLEAVIMKDR 41 (484)
Q Consensus 18 teeeL~e~Fs~~G~V~~v~I~~d~ 41 (484)
.-++++++.++|.+|.+..++.-+
T Consensus 120 ~l~~f~~l~~~f~d~adFl~VYI~ 143 (237)
T PF00837_consen 120 KLDAFKRLVEDFSDVADFLIVYIE 143 (237)
T ss_pred HHHHHHHHHHHhhhhhheehhhHh
Confidence 456777888888887766655543
No 262
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=27.94 E-value=1.6e+02 Score=23.74 Aligned_cols=56 Identities=13% Similarity=0.204 Sum_probs=38.5
Q ss_pred EEecccccccchhHHHHHhhh-cC-ceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHH
Q 011518 108 IFVGGLASTVTESDFKKYFDQ-FG-IITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLK 166 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~~-~G-~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~ 166 (484)
-|+-.++..++..||++.+++ |+ .|..|..+.-+.. .--|||++..-+.|...-.+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~---~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRG---EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCC---ceEEEEEECCCCcHHHHHHh
Confidence 445567889999999999987 55 4666665544321 12599999887777665543
No 263
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.55 E-value=1.4e+02 Score=27.14 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=38.6
Q ss_pred ccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHh
Q 011518 112 GLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTF 168 (484)
Q Consensus 112 nLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~ 168 (484)
.|+..+.+|.|+++.+-+|.|.+.. -.| -.+.|-+.+.+++||+...
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 4788899999999999999987765 333 3577899999999997664
No 264
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=27.20 E-value=1.3e+02 Score=33.37 Aligned_cols=92 Identities=11% Similarity=0.236 Sum_probs=53.1
Q ss_pred eeEEEEeChhhHHHhh--hhccccccceee---ecccCCCCcccccc--cCCCcccCCCCCCccceEEecccccccchhH
Q 011518 49 FGFIVFADPAVAERVV--MQKHMIDGRTVE---AKKAVPRDDQNIQN--RNNSSIHGSPGPARTKKIFVGGLASTVTESD 121 (484)
Q Consensus 49 ~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~---V~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~LfVgnLp~~~teed 121 (484)
-|||.+.+++..+-.. ++...+..-.|+ -.++.+.+++-.+. ++.....-.|+...+..||+.+|..++.++-
T Consensus 238 ~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~HqIFlEPEGl~~~evY~nGlSTSlP~dV 317 (621)
T COG0445 238 PCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKERHQIFLEPEGLDTDEVYPNGLSTSLPEDV 317 (621)
T ss_pred ceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCccceEEecCCCCCCceEecCcccccCCHHH
Confidence 5888888776655433 333333332232 22333333322222 2222333445556788999999988888877
Q ss_pred HHHHhhhcCceeeEEEEee
Q 011518 122 FKKYFDQFGIITDVVVMYD 140 (484)
Q Consensus 122 L~~~F~~~G~I~~v~i~~d 140 (484)
-.++....--+++++|++.
T Consensus 318 Q~~~irsipGlEna~i~rp 336 (621)
T COG0445 318 QEQIIRSIPGLENAEILRP 336 (621)
T ss_pred HHHHHHhCcccccceeecc
Confidence 7777777666777777653
No 265
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.78 E-value=2.6e+02 Score=31.36 Aligned_cols=67 Identities=16% Similarity=0.132 Sum_probs=36.4
Q ss_pred cccchhHHHHHhhhcCceeeEEEEeeCC-----------------CCCccceeeeeecc------HHHHHHHHHHHhhhh
Q 011518 115 STVTESDFKKYFDQFGIITDVVVMYDHN-----------------TQRPRGFGFITYDS------EEAVDKVLLKTFHEL 171 (484)
Q Consensus 115 ~~~teedL~~~F~~~G~I~~v~i~~d~~-----------------tg~~rG~aFV~F~s------~e~A~~Al~~~~~~l 171 (484)
...|+|-|+++++.-|--+..+++..++ ....-|+||+.|+| ++..-.+|+.+-..|
T Consensus 231 t~~t~ellk~HL~~TGGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WL 310 (764)
T KOG1148|consen 231 TQHTEELLKEHLERTGGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWL 310 (764)
T ss_pred ccchHHHHHHHHHhhCCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCCCcchhhHHHHHHHHHHHHHh
Confidence 4467889999998766432323222211 12356899999977 223334554443444
Q ss_pred cCeEEEEeec
Q 011518 172 NGKMVEVKRA 181 (484)
Q Consensus 172 ~Gr~I~V~~a 181 (484)
.=.+.+|..+
T Consensus 311 G~~P~kvTys 320 (764)
T KOG1148|consen 311 GFEPYKVTYS 320 (764)
T ss_pred CCCceeeecc
Confidence 4445454443
No 266
>PF14893 PNMA: PNMA
Probab=26.46 E-value=63 Score=33.47 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.6
Q ss_pred ccceEEeeeccCCchHHHHHHHHh
Q 011518 5 LGKLFIGGISWDTNEDRLRDYFQA 28 (484)
Q Consensus 5 ~r~LfVgnLP~~~teeeL~e~Fs~ 28 (484)
.|-|.|.+||.+++++||++.+..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHH
Confidence 577999999999999999998865
No 267
>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=26.39 E-value=83 Score=35.45 Aligned_cols=91 Identities=12% Similarity=0.181 Sum_probs=56.4
Q ss_pred CchHHHHHHHHhhhhhhhheeecccc-cccccceeEEEEeChhhHHHhhhhccccccceeeecccCCCCcccccccCCCc
Q 011518 17 TNEDRLRDYFQAFGEVLEAVIMKDRA-TGRARGFGFIVFADPAVAERVVMQKHMIDGRTVEAKKAVPRDDQNIQNRNNSS 95 (484)
Q Consensus 17 ~teeeL~e~Fs~~G~V~~v~I~~d~~-tg~skG~aFVeF~~~e~A~~Al~~~~~i~Gr~I~V~~a~~~~~~~~~~~~~~~ 95 (484)
+.-.||+..+..+..|.++-++-.+. ..-..-+|||.+++.......|..... +.|+-+
T Consensus 508 igtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g~~~~~~L~kel~---~~VR~~----------------- 567 (626)
T KOG1175|consen 508 IGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSGSHDPEQLTKELV---KHVRSV----------------- 567 (626)
T ss_pred ecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCCCCChHHHHHHHH---HHHHhh-----------------
Confidence 56688999999999999877654321 122334789999887554444411110 000000
Q ss_pred ccCCCCCCccceEEecccccccchhHHHHHhhhc
Q 011518 96 IHGSPGPARTKKIFVGGLASTVTESDFKKYFDQF 129 (484)
Q Consensus 96 ~~~~~~~~~~~~LfVgnLp~~~teedL~~~F~~~ 129 (484)
-.+-..+.+.++|.+||++.+-..+|..+.+.
T Consensus 568 --igp~a~P~~I~~v~~LPkTrSGKimRr~lrki 599 (626)
T KOG1175|consen 568 --IGPYAVPRLIVFVPGLPKTRSGKIMRRALRKI 599 (626)
T ss_pred --cCcccccceeEecCCCCccccchhHHHHHHHH
Confidence 01112345778999999999988888888764
No 268
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.37 E-value=1e+02 Score=23.92 Aligned_cols=19 Identities=26% Similarity=0.630 Sum_probs=15.1
Q ss_pred hhHHHHHhhhcCceeeEEE
Q 011518 119 ESDFKKYFDQFGIITDVVV 137 (484)
Q Consensus 119 eedL~~~F~~~G~I~~v~i 137 (484)
-++||++|+..|+|.-+-|
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999865543
No 269
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=26.13 E-value=2.5e+02 Score=20.57 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=38.8
Q ss_pred eEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccH----HHHHHHHHHH
Q 011518 107 KIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSE----EAVDKVLLKT 167 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~----e~A~~Al~~~ 167 (484)
+|.|.++.-.--...|++.+.+.--|..+.+-... ..+-|+|... +++.++|++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46677777777778899999998888888774432 3588888653 5666666543
No 270
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=26.10 E-value=93 Score=27.30 Aligned_cols=48 Identities=19% Similarity=0.405 Sum_probs=31.2
Q ss_pred cCCchHHHHHHHHhhhh-hhhheeecc-c---ccccccceeEEEEeChhhHHHh
Q 011518 15 WDTNEDRLRDYFQAFGE-VLEAVIMKD-R---ATGRARGFGFIVFADPAVAERV 63 (484)
Q Consensus 15 ~~~teeeL~e~Fs~~G~-V~~v~I~~d-~---~tg~skG~aFVeF~~~e~A~~A 63 (484)
.++.++||+|-+.+.=+ -.++.++.+ + -.+++.|||.| |.+.|.|.+.
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akkf 85 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKKF 85 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHhc
Confidence 35789999998887323 233333333 2 24688899988 7777777654
No 271
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=25.83 E-value=41 Score=23.19 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=10.4
Q ss_pred cCCchHHHHHHHHhhh
Q 011518 15 WDTNEDRLRDYFQAFG 30 (484)
Q Consensus 15 ~~~teeeL~e~Fs~~G 30 (484)
.++++++|++.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998754
No 272
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=1.3e+02 Score=31.83 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=28.5
Q ss_pred cccceEEeeeccC-CchHHHHHHHHhh----hhhhhheeecc
Q 011518 4 ELGKLFIGGISWD-TNEDRLRDYFQAF----GEVLEAVIMKD 40 (484)
Q Consensus 4 d~r~LfVgnLP~~-~teeeL~e~Fs~~----G~V~~v~I~~d 40 (484)
.+++|-|=||.|+ +..++|...|+.| |+|..|.|...
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 3578889999997 6888999999886 45666777654
No 273
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=23.94 E-value=3e+02 Score=21.55 Aligned_cols=62 Identities=19% Similarity=0.392 Sum_probs=40.0
Q ss_pred ccccccchhHHHHHhh-hcCce-eeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhhhhcCeEEEEe
Q 011518 112 GLASTVTESDFKKYFD-QFGII-TDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVK 179 (484)
Q Consensus 112 nLp~~~teedL~~~F~-~~G~I-~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~~l~Gr~I~V~ 179 (484)
.++..++.++|++..+ +|+.. ..+.|....+.+ -.|...+.++.+.|++..... ..+.|++.
T Consensus 17 ~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~dg-----D~V~i~sd~Dl~~a~~~~~~~-~~~~lrl~ 80 (84)
T PF00564_consen 17 SLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDEDG-----DLVTISSDEDLQEAIEQAKES-GSKTLRLF 80 (84)
T ss_dssp EECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETTS-----SEEEESSHHHHHHHHHHHHHC-TTSCEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCCC-----CEEEeCCHHHHHHHHHHHHhc-CCCcEEEE
Confidence 4677778888887774 46653 444444322222 579999999999999887632 44455443
No 274
>smart00833 CobW_C Cobalamin synthesis protein cobW C-terminal domain. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis PUBMED:12869542. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression PUBMED:7765511.
Probab=23.54 E-value=2.6e+02 Score=22.15 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=16.7
Q ss_pred ccceEEecccccccchhHHHHHhhhc
Q 011518 104 RTKKIFVGGLASTVTESDFKKYFDQF 129 (484)
Q Consensus 104 ~~~~LfVgnLp~~~teedL~~~F~~~ 129 (484)
..+-|+|+. ++.++.|++.|..|
T Consensus 69 ~~~lV~IG~---~l~~~~l~~~l~~~ 91 (92)
T smart00833 69 RTRLVFIGR---DLDEEAIRAALDAC 91 (92)
T ss_pred ceEEEEEeC---CCCHHHHHHHHHHh
Confidence 356778874 57788888888754
No 275
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=23.42 E-value=78 Score=27.69 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=30.8
Q ss_pred ccCCchHHHHHHHHh---hhhhhhheeecccccccccceeEEEEeChhh
Q 011518 14 SWDTNEDRLRDYFQA---FGEVLEAVIMKDRATGRARGFGFIVFADPAV 59 (484)
Q Consensus 14 P~~~teeeL~e~Fs~---~G~V~~v~I~~d~~tg~skG~aFVeF~~~e~ 59 (484)
|..+|..||+++|++ |--|+.-.|.+|-..--+-..||..|.....
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQF 131 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccchh
Confidence 456899999999987 4345555566653333344579999876543
No 276
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=22.59 E-value=72 Score=34.90 Aligned_cols=36 Identities=11% Similarity=0.378 Sum_probs=27.4
Q ss_pred ceeEEEEeChhhHHHhh--hhccccccceeeecccCCC
Q 011518 48 GFGFIVFADPAVAERVV--MQKHMIDGRTVEAKKAVPR 83 (484)
Q Consensus 48 G~aFVeF~~~e~A~~Al--~~~~~i~Gr~I~V~~a~~~ 83 (484)
.++++.|++++.+.+|+ .++..+....+.+..+...
T Consensus 64 ~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 64 KYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 58999999999999998 6666666666666655443
No 277
>PF14893 PNMA: PNMA
Probab=22.15 E-value=50 Score=34.17 Aligned_cols=26 Identities=12% Similarity=0.335 Sum_probs=22.4
Q ss_pred CccceEEecccccccchhHHHHHhhh
Q 011518 103 ARTKKIFVGGLASTVTESDFKKYFDQ 128 (484)
Q Consensus 103 ~~~~~LfVgnLp~~~teedL~~~F~~ 128 (484)
+..+.|.|.+||.+|++++|++.++.
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 44578999999999999999998864
No 278
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=21.86 E-value=3.1e+02 Score=31.04 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=35.4
Q ss_pred cccceEEeeeccCCchHHHHHHHHhh---hhhhhheeecccccccccceeEE-EEeChhhHHHhh
Q 011518 4 ELGKLFIGGISWDTNEDRLRDYFQAF---GEVLEAVIMKDRATGRARGFGFI-VFADPAVAERVV 64 (484)
Q Consensus 4 d~r~LfVgnLP~~~teeeL~e~Fs~~---G~V~~v~I~~d~~tg~skG~aFV-eF~~~e~A~~Al 64 (484)
+.++|.|..||..++.+.|.+...+. ++++ |.-++|. +. +...|| +++....++..+
T Consensus 219 ~~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~-s~--~~v~i~i~l~~~~~~~~~~ 279 (635)
T PRK09631 219 DEKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDY-TA--ENVEIEIKLPRGVYASEVI 279 (635)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeC-CC--CcEEEEEEECCCCCHHHHH
Confidence 34789999999999999998876654 2343 4445553 22 245554 444444455444
No 279
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=21.50 E-value=3.8e+02 Score=24.96 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=42.0
Q ss_pred cceEEecccccccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeeeeeccHHHHHHHHHHHhh
Q 011518 105 TKKIFVGGLASTVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFH 169 (484)
Q Consensus 105 ~~~LfVgnLp~~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F~s~e~A~~Al~~~~~ 169 (484)
...+.| +|+..+.+|.|.++.+-+|.|.+. .+. .-.+.|-+.+.+++||+.+-.
T Consensus 112 ~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s~ 165 (169)
T PF09869_consen 112 FETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFSS 165 (169)
T ss_pred ceeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHHH
Confidence 344555 799999999999999999988775 221 247888999999999987653
No 280
>PRK10905 cell division protein DamX; Validated
Probab=21.38 E-value=1.5e+02 Score=30.42 Aligned_cols=56 Identities=11% Similarity=0.253 Sum_probs=36.0
Q ss_pred ccchhHHHHHhhhcCceeeEEEEeeCCCCCccceeee--eeccHHHHHHHHHHHhhhhcC
Q 011518 116 TVTESDFKKYFDQFGIITDVVVMYDHNTQRPRGFGFI--TYDSEEAVDKVLLKTFHELNG 173 (484)
Q Consensus 116 ~~teedL~~~F~~~G~I~~v~i~~d~~tg~~rG~aFV--~F~s~e~A~~Al~~~~~~l~G 173 (484)
..+++.|+++..+++ +....+......+++. |..+ .|.+.++|++|++++..+|..
T Consensus 255 ~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLPa~vQa 312 (328)
T PRK10905 255 SSNYDNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLPADVQA 312 (328)
T ss_pred cCCHHHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCCHHHHh
Confidence 345688888888885 3444444443334322 3332 589999999999998865543
No 281
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=21.14 E-value=1.6e+02 Score=25.02 Aligned_cols=47 Identities=19% Similarity=0.441 Sum_probs=28.1
Q ss_pred CCchHHHHHHHHh-hhhhhhheeeccccc----ccccceeEEEEeChhhHHHh
Q 011518 16 DTNEDRLRDYFQA-FGEVLEAVIMKDRAT----GRARGFGFIVFADPAVAERV 63 (484)
Q Consensus 16 ~~teeeL~e~Fs~-~G~V~~v~I~~d~~t----g~skG~aFVeF~~~e~A~~A 63 (484)
+.+..||++-+.. ++.=.++.|+..-.| ++++|||.| |.+.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4678889887776 553334444433223 466777776 6666666544
No 282
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=20.90 E-value=4.4e+02 Score=21.04 Aligned_cols=58 Identities=21% Similarity=0.297 Sum_probs=35.3
Q ss_pred EEecccccccchhHHHHHhh-------hcCceeeEEEEeeCCCCC-ccce---eeeeeccHHHHHHHHH
Q 011518 108 IFVGGLASTVTESDFKKYFD-------QFGIITDVVVMYDHNTQR-PRGF---GFITYDSEEAVDKVLL 165 (484)
Q Consensus 108 LfVgnLp~~~teedL~~~F~-------~~G~I~~v~i~~d~~tg~-~rG~---aFV~F~s~e~A~~Al~ 165 (484)
|.+-.|...+++++++++++ +...|+.+.+-++..... .++| -+++|++.++.++-..
T Consensus 4 ivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~ 72 (97)
T PF07876_consen 4 IVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQT 72 (97)
T ss_dssp EEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHc
Confidence 33345777888877755443 345677777776643332 2344 3468899888776654
No 283
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=20.73 E-value=4.1e+02 Score=27.45 Aligned_cols=47 Identities=11% Similarity=0.171 Sum_probs=29.3
Q ss_pred eEEecccccccchhHHH---HHhhhcCceeeEEEEeeCCCCCccceeeeee
Q 011518 107 KIFVGGLASTVTESDFK---KYFDQFGIITDVVVMYDHNTQRPRGFGFITY 154 (484)
Q Consensus 107 ~LfVgnLp~~~teedL~---~~F~~~G~I~~v~i~~d~~tg~~rG~aFV~F 154 (484)
..++.+||..+.+.+++ +++++. .+.++.|..|...+.+.|++.+.+
T Consensus 188 ~~~~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 188 ISHAANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EEEEccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 45778899888876655 444442 234566666655566777766544
Done!